Query 045525
Match_columns 295
No_of_seqs 77 out of 79
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 04:37:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045525.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045525hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1whw_A Hypothetical protein ri 99.0 1.7E-09 5.9E-14 82.4 10.6 90 197-294 5-99 (99)
2 2dh8_A DAZ-associated protein 98.9 2.1E-09 7.1E-14 83.0 7.1 88 196-291 12-103 (105)
3 2rs2_A Musashi-1, RNA-binding 98.9 6.2E-09 2.1E-13 82.0 9.7 84 195-287 20-108 (109)
4 2dgs_A DAZ-associated protein 98.9 7.2E-09 2.4E-13 79.1 9.1 88 196-291 6-97 (99)
5 1x4h_A RNA-binding protein 28; 98.9 8.7E-09 3E-13 79.8 9.1 90 196-291 11-109 (111)
6 2cqb_A Peptidyl-prolyl CIS-tra 98.9 9.3E-09 3.2E-13 78.7 9.1 89 195-291 7-100 (102)
7 1wf0_A TDP-43, TAR DNA-binding 98.9 8.3E-09 2.8E-13 77.3 8.5 83 197-291 2-86 (88)
8 2cqg_A TDP-43, TAR DNA-binding 98.8 2.6E-08 9.1E-13 76.5 10.4 83 196-288 11-98 (103)
9 2dnz_A Probable RNA-binding pr 98.8 1.5E-08 5.1E-13 76.4 8.7 87 197-291 2-93 (95)
10 1x5t_A Splicing factor 3B subu 98.8 2.6E-08 9E-13 75.2 10.1 87 197-290 2-93 (96)
11 2cpz_A CUG triplet repeat RNA- 98.8 1.2E-08 4.2E-13 80.0 8.3 88 196-291 21-113 (115)
12 1x5s_A Cold-inducible RNA-bind 98.8 2.1E-08 7.2E-13 76.7 9.0 88 195-290 7-99 (102)
13 2lxi_A RNA-binding protein 10; 98.8 1.9E-08 6.5E-13 76.9 8.6 80 201-286 2-86 (91)
14 2dnm_A SRP46 splicing factor; 98.8 2E-08 6.8E-13 77.2 8.7 88 196-291 9-101 (103)
15 2cq3_A RNA-binding protein 9; 98.8 3.7E-08 1.3E-12 75.6 10.1 89 195-291 10-101 (103)
16 2cpf_A RNA binding motif prote 98.8 1.8E-08 6.3E-13 76.5 8.2 86 197-290 2-95 (98)
17 1x4a_A Splicing factor, argini 98.8 2.8E-08 9.5E-13 77.2 9.4 88 196-291 18-107 (109)
18 2dgo_A Cytotoxic granule-assoc 98.8 2.7E-08 9.2E-13 77.8 9.3 84 196-287 11-99 (115)
19 2fc9_A NCL protein; structure 98.8 1.6E-08 5.3E-13 77.5 7.4 88 196-292 11-100 (101)
20 2cpy_A RNA-binding protein 12; 98.8 2E-08 6.9E-13 79.3 8.1 83 194-284 9-95 (114)
21 2cq0_A Eukaryotic translation 98.8 1.3E-08 4.4E-13 78.2 6.8 86 197-290 12-102 (103)
22 1x4b_A Heterogeneous nuclear r 98.8 4.7E-08 1.6E-12 76.7 10.1 86 197-290 24-113 (116)
23 1wi8_A EIF-4B, eukaryotic tran 98.8 4.8E-08 1.6E-12 75.3 9.9 85 197-291 12-102 (104)
24 2cqd_A RNA-binding region cont 98.8 1.1E-07 3.9E-12 74.5 12.1 81 196-285 13-98 (116)
25 2dis_A Unnamed protein product 98.7 5.7E-08 2E-12 75.1 10.1 85 197-286 5-95 (109)
26 2cqi_A Nucleolysin TIAR; RNA r 98.7 9E-08 3.1E-12 73.5 11.0 85 196-288 11-98 (103)
27 1u6f_A Tcubp1, RNA-binding pro 98.7 7.9E-08 2.7E-12 77.5 11.0 89 195-291 37-130 (139)
28 1x5u_A Splicing factor 3B subu 98.7 7.7E-08 2.6E-12 73.9 10.3 86 195-288 10-100 (105)
29 2cqh_A IGF-II mRNA-binding pro 98.7 2E-08 6.8E-13 75.8 6.7 85 196-290 4-90 (93)
30 2dgp_A Bruno-like 4, RNA bindi 98.7 3.2E-08 1.1E-12 76.2 8.0 89 195-291 8-104 (106)
31 3d2w_A TAR DNA-binding protein 98.7 5.5E-08 1.9E-12 74.2 9.2 78 197-286 8-87 (89)
32 2d9p_A Polyadenylate-binding p 98.7 3.1E-08 1.1E-12 76.1 7.6 89 195-291 10-101 (103)
33 2cph_A RNA binding motif prote 98.7 5.9E-08 2E-12 74.6 9.1 87 196-290 11-104 (107)
34 2cpe_A RNA-binding protein EWS 98.7 3.8E-08 1.3E-12 76.8 8.0 87 197-290 12-110 (113)
35 2dng_A Eukaryotic translation 98.7 7.4E-08 2.5E-12 74.1 9.4 87 195-291 10-101 (103)
36 2e5g_A U6 snRNA-specific termi 98.7 8.3E-08 2.9E-12 72.8 9.2 83 197-291 5-90 (94)
37 2kn4_A Immunoglobulin G-bindin 98.7 9.3E-08 3.2E-12 78.5 10.1 87 196-290 66-157 (158)
38 2cpx_A Hypothetical protein FL 98.7 6.8E-08 2.3E-12 75.4 8.7 89 196-291 21-113 (115)
39 2do4_A Squamous cell carcinoma 98.7 5.9E-08 2E-12 74.1 8.1 82 197-286 14-99 (100)
40 3ucg_A Polyadenylate-binding p 98.7 6.8E-08 2.3E-12 71.8 8.0 78 199-285 5-87 (89)
41 3bs9_A Nucleolysin TIA-1 isofo 98.7 4.7E-08 1.6E-12 72.4 7.0 79 197-283 3-86 (87)
42 1x5p_A Negative elongation fac 98.7 1.6E-07 5.5E-12 71.6 10.2 86 195-291 10-95 (97)
43 2dnq_A RNA-binding protein 4B; 98.7 9.7E-08 3.3E-12 71.7 8.7 83 196-291 4-88 (90)
44 2dnl_A Cytoplasmic polyadenyla 98.7 3.8E-08 1.3E-12 77.7 6.7 85 197-287 5-105 (114)
45 2fy1_A RNA-binding motif prote 98.7 1.4E-07 4.7E-12 75.1 9.9 83 197-287 4-90 (116)
46 2dnp_A RNA-binding protein 14; 98.6 1.3E-07 4.6E-12 70.9 9.2 80 196-288 5-86 (90)
47 1p27_B RNA-binding protein 8A; 98.6 5.6E-08 1.9E-12 74.8 7.1 82 197-286 20-106 (106)
48 2dgv_A HnRNP M, heterogeneous 98.6 6.9E-08 2.3E-12 72.3 7.3 83 197-287 5-90 (92)
49 1fj7_A Nucleolin RBD1, protein 98.6 5.3E-08 1.8E-12 74.5 6.4 83 196-287 13-99 (101)
50 2dhg_A TRNA selenocysteine ass 98.6 7E-08 2.4E-12 74.0 7.1 84 197-287 6-94 (104)
51 2dnh_A Bruno-like 5, RNA bindi 98.6 7.9E-08 2.7E-12 73.8 7.4 83 197-290 12-104 (105)
52 4f25_A Polyadenylate-binding p 98.6 6.5E-08 2.2E-12 76.6 7.1 82 198-287 3-87 (115)
53 2xs2_A Deleted in azoospermia- 98.6 5.7E-08 1.9E-12 74.5 6.3 81 197-287 6-90 (102)
54 2div_A TRNA selenocysteine ass 98.6 2.1E-07 7.3E-12 70.7 9.3 82 196-284 5-95 (99)
55 3s7r_A Heterogeneous nuclear r 98.6 1.6E-07 5.4E-12 69.8 8.3 75 196-279 7-86 (87)
56 1oo0_B CG8781-PA, drosophila Y 98.6 1.5E-07 5E-12 73.1 8.5 83 196-286 22-109 (110)
57 4a8x_A RNA-binding protein wit 98.6 1.1E-07 3.8E-12 70.3 7.4 80 198-285 2-87 (88)
58 2ki2_A SS-DNA binding protein 98.6 3.8E-08 1.3E-12 73.7 4.7 81 201-290 2-87 (90)
59 1s79_A Lupus LA protein; RRM, 98.6 1.1E-07 3.8E-12 74.8 7.5 74 197-279 8-85 (103)
60 2cq4_A RNA binding motif prote 98.6 4.4E-08 1.5E-12 76.7 5.1 83 197-288 22-109 (114)
61 2kxn_B Transformer-2 protein h 98.6 5.5E-08 1.9E-12 79.2 5.7 84 195-286 41-129 (129)
62 2m2b_A RNA-binding protein 10; 98.6 3.9E-08 1.3E-12 79.4 4.8 87 197-290 20-115 (131)
63 2do0_A HnRNP M, heterogeneous 98.6 2.5E-07 8.6E-12 72.0 9.0 79 197-283 12-94 (114)
64 1wg5_A Heterogeneous nuclear r 98.6 2.2E-07 7.6E-12 72.1 8.6 85 196-288 11-99 (104)
65 2lea_A Serine/arginine-rich sp 98.6 1.6E-07 5.3E-12 76.9 8.1 86 195-288 42-132 (135)
66 2kt5_A RNA and export factor-b 98.6 5.5E-07 1.9E-11 71.5 10.9 87 195-289 30-120 (124)
67 2cq1_A PTB-like protein L; RRM 98.6 1.1E-07 3.7E-12 75.1 6.7 85 198-291 13-99 (101)
68 3p5t_L Cleavage and polyadenyl 98.6 4.2E-08 1.4E-12 74.1 3.9 82 201-288 2-88 (90)
69 2dgt_A RNA-binding protein 30; 98.5 5.9E-07 2E-11 67.6 10.2 81 196-289 6-88 (92)
70 1wel_A RNA-binding protein 12; 98.5 1.9E-08 6.5E-13 80.4 2.0 82 195-284 20-105 (124)
71 1sjq_A Polypyrimidine tract-bi 98.5 2E-07 6.8E-12 75.0 7.8 87 196-291 12-100 (105)
72 4fxv_A ELAV-like protein 1; RN 98.5 2E-07 6.9E-12 72.5 7.6 78 197-282 16-98 (99)
73 3ex7_B RNA-binding protein 8A; 98.5 2.1E-07 7.1E-12 73.9 7.8 85 196-288 18-107 (126)
74 2cpj_A Non-POU domain-containi 98.5 1.9E-07 6.4E-12 71.3 7.2 85 195-290 10-96 (99)
75 1l3k_A Heterogeneous nuclear r 98.5 2.1E-07 7E-12 77.4 7.9 83 196-286 9-95 (196)
76 2x1f_A MRNA 3'-END-processing 98.5 2.9E-07 9.9E-12 69.9 8.1 79 200-286 2-85 (96)
77 1x4g_A Nucleolysin TIAR; struc 98.5 5.2E-07 1.8E-11 70.1 9.7 84 197-291 22-107 (109)
78 2jwn_A Embryonic polyadenylate 98.5 4.4E-07 1.5E-11 71.8 9.4 80 198-286 34-118 (124)
79 3md1_A Nuclear and cytoplasmic 98.5 2.3E-07 8E-12 68.0 7.1 77 201-284 2-82 (83)
80 2err_A Ataxin-2-binding protei 98.5 2.3E-07 7.9E-12 72.7 7.4 81 195-283 24-107 (109)
81 2e5j_A Methenyltetrahydrofolat 98.5 3.5E-07 1.2E-11 69.7 8.0 78 195-285 14-96 (97)
82 2cpd_A Apobec-1 stimulating pr 98.5 1.4E-06 4.6E-11 66.5 11.2 85 195-290 10-96 (99)
83 3s8s_A Histone-lysine N-methyl 98.5 2.3E-07 7.7E-12 73.7 6.8 77 197-283 3-86 (110)
84 1uaw_A Mouse-musashi-1; RNP-ty 98.5 1.5E-07 5.3E-12 68.0 5.4 71 201-280 1-76 (77)
85 2cjk_A Nuclear polyadenylated 98.5 2E-07 6.9E-12 75.5 6.6 76 198-283 1-81 (167)
86 2fc8_A NCL protein; structure 98.5 2.8E-07 9.7E-12 70.3 6.8 86 195-290 10-99 (102)
87 2jrs_A RNA-binding protein 39; 98.5 1.6E-07 5.4E-12 73.9 5.5 81 196-284 22-107 (108)
88 2cqc_A Arginine/serine-rich sp 98.5 4.9E-07 1.7E-11 67.8 7.6 77 195-279 10-91 (95)
89 3mdf_A Peptidyl-prolyl CIS-tra 98.5 3.9E-07 1.3E-11 67.0 6.9 75 197-279 4-83 (85)
90 3lqv_A PRE-mRNA branch site pr 98.4 2.9E-07 9.8E-12 71.9 6.5 83 196-286 4-88 (115)
91 1p1t_A Cleavage stimulation fa 98.4 3E-07 1E-11 70.3 6.3 82 197-286 5-91 (104)
92 2j76_E EIF-4B, EIF4B, eukaryot 98.4 2E-07 6.8E-12 71.8 5.3 80 195-284 14-99 (100)
93 2dgu_A Heterogeneous nuclear r 98.4 2.2E-06 7.4E-11 65.9 11.1 78 197-287 8-87 (103)
94 2cpi_A CCR4-NOT transcription 98.4 3.7E-07 1.3E-11 71.6 6.7 86 198-290 13-108 (111)
95 3md3_A Nuclear and cytoplasmic 98.4 6E-07 2.1E-11 72.0 8.0 81 201-289 1-85 (166)
96 1wex_A Hypothetical protein (r 98.4 4.3E-07 1.5E-11 71.9 7.0 81 198-287 13-95 (104)
97 2dgw_A Probable RNA-binding pr 98.4 1.2E-06 4E-11 65.7 9.1 80 196-284 6-88 (91)
98 3n9u_C Cleavage and polyadenyl 98.4 3.7E-07 1.3E-11 76.9 7.0 81 197-283 52-137 (156)
99 2dgx_A KIAA0430 protein; RRM d 98.4 2.4E-06 8.1E-11 65.2 10.4 81 197-286 6-93 (96)
100 1iqt_A AUF1, heterogeneous nuc 98.4 6.6E-07 2.3E-11 64.5 7.0 69 202-279 1-74 (75)
101 2e5h_A Zinc finger CCHC-type a 98.4 1E-06 3.5E-11 66.1 8.3 76 195-278 11-91 (94)
102 2cqp_A RNA-binding protein 12; 98.4 4.5E-07 1.5E-11 68.7 6.2 80 196-282 11-94 (98)
103 1h2v_Z 20 kDa nuclear CAP bind 98.4 1.1E-06 3.9E-11 72.3 9.0 85 195-287 34-123 (156)
104 2khc_A Testis-specific RNP-typ 98.4 4.6E-07 1.6E-11 71.0 6.2 75 196-278 36-115 (118)
105 2qfj_A FBP-interacting repress 98.4 7.2E-07 2.5E-11 75.2 7.5 87 198-292 123-214 (216)
106 1nu4_A U1A RNA binding domain; 98.4 4E-07 1.4E-11 68.7 5.3 81 197-285 5-91 (97)
107 1x4c_A Splicing factor, argini 98.4 2.9E-06 1E-10 66.0 10.3 79 197-287 12-97 (108)
108 2ywk_A Putative RNA-binding pr 98.4 7.1E-07 2.4E-11 67.1 6.5 76 196-279 12-91 (95)
109 2ad9_A Polypyrimidine tract-bi 98.4 6.5E-07 2.2E-11 73.3 6.8 86 197-291 28-115 (119)
110 1why_A Hypothetical protein ri 98.4 9.4E-07 3.2E-11 67.1 7.2 78 197-285 14-95 (97)
111 1l3k_A Heterogeneous nuclear r 98.4 1E-06 3.4E-11 73.2 7.9 83 197-288 101-188 (196)
112 2bz2_A Negative elongation fac 98.4 5E-07 1.7E-11 72.9 5.8 85 195-290 34-118 (121)
113 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.4 2E-06 6.7E-11 68.7 9.3 77 195-279 58-139 (140)
114 2dha_A FLJ20171 protein; RRM d 98.3 5.6E-07 1.9E-11 73.5 6.1 79 197-283 20-105 (123)
115 1fjc_A Nucleolin RBD2, protein 98.3 5.9E-07 2E-11 67.9 5.7 81 196-286 12-94 (96)
116 2cjk_A Nuclear polyadenylated 98.3 9.3E-07 3.2E-11 71.6 7.1 77 199-284 86-167 (167)
117 2la6_A RNA-binding protein FUS 98.3 1.2E-06 4.2E-11 66.7 7.2 78 195-279 8-97 (99)
118 2db1_A Heterogeneous nuclear r 98.3 1.1E-06 3.7E-11 70.1 7.1 80 196-283 13-98 (118)
119 1wez_A HnRNP H', FTP-3, hetero 98.3 7.1E-07 2.4E-11 69.7 5.9 84 195-287 10-96 (102)
120 1b7f_A Protein (SXL-lethal pro 98.3 1.4E-06 4.6E-11 70.5 7.8 80 199-286 2-86 (168)
121 1rk8_A CG8781-PA, CG8781-PA pr 98.3 1.1E-06 3.9E-11 73.4 7.5 84 197-288 69-157 (165)
122 2lkz_A RNA-binding protein 5; 98.3 5.2E-07 1.8E-11 70.3 5.0 78 197-279 6-91 (95)
123 2jvo_A Nucleolar protein 3; nu 98.3 1.2E-06 4.1E-11 68.9 7.1 80 195-287 26-107 (108)
124 2mss_A Protein (musashi1); RNA 98.3 1E-06 3.5E-11 63.6 6.2 69 202-279 1-74 (75)
125 1x4d_A Matrin 3; structural ge 98.3 8.7E-07 3E-11 70.4 6.2 80 197-285 12-94 (102)
126 2la4_A Nuclear and cytoplasmic 98.3 8.4E-07 2.9E-11 67.7 5.7 76 197-283 24-101 (101)
127 2nlw_A Eukaryotic translation 98.3 2.6E-06 9E-11 66.1 8.6 80 198-285 13-102 (105)
128 1fje_B Nucleolin RBD12, protei 98.3 7.9E-07 2.7E-11 72.9 5.9 83 196-287 9-95 (175)
129 2krb_A Eukaryotic translation 98.3 1.3E-06 4.6E-11 64.3 6.2 66 200-273 1-75 (81)
130 3ns6_A Eukaryotic translation 98.3 4.8E-07 1.6E-11 69.9 3.9 76 199-285 5-95 (100)
131 1wf1_A RNA-binding protein RAL 98.3 2.8E-06 9.6E-11 66.0 8.3 77 197-286 24-103 (110)
132 2lcw_A RNA-binding protein FUS 97.6 1E-07 3.5E-12 75.0 0.0 85 197-288 4-100 (116)
133 2lmi_A GRSF-1, G-rich sequence 98.3 6.7E-07 2.3E-11 69.7 4.7 81 196-284 7-93 (107)
134 2ek1_A RNA-binding protein 12; 98.3 5.7E-07 2E-11 67.6 4.1 76 197-279 12-91 (95)
135 3r27_A HnRNP L, heterogeneous 98.3 2.3E-06 8E-11 68.2 7.9 78 197-283 18-97 (100)
136 4f02_A Polyadenylate-binding p 98.3 1.7E-06 5.8E-11 74.6 7.5 80 197-283 12-95 (213)
137 2hgl_A HNRPF protein, heteroge 98.3 9.7E-07 3.3E-11 73.3 5.8 80 196-283 40-125 (136)
138 3ulh_A THO complex subunit 4; 98.3 2.3E-06 7.8E-11 65.8 7.4 76 196-279 25-104 (107)
139 1fxl_A Paraneoplastic encephal 98.3 2.1E-06 7.2E-11 68.9 7.4 78 200-285 2-84 (167)
140 3egn_A RNA-binding protein 40; 98.2 1.9E-06 6.5E-11 70.0 6.7 85 197-288 42-135 (143)
141 2yh0_A Splicing factor U2AF 65 98.2 3.3E-06 1.1E-10 70.2 8.2 83 196-286 110-197 (198)
142 2jvr_A Nucleolar protein 3; RN 98.2 4.7E-06 1.6E-10 66.9 8.8 79 197-283 25-105 (111)
143 2voo_A Lupus LA protein; RNA-b 98.2 1.3E-06 4.6E-11 75.6 5.9 71 199-278 108-182 (193)
144 2hzc_A Splicing factor U2AF 65 98.2 6.5E-06 2.2E-10 60.7 8.7 73 197-279 3-86 (87)
145 2i2y_A Fusion protein consists 98.2 4E-06 1.4E-10 68.6 8.1 79 196-284 69-149 (150)
146 2hgm_A HNRPF protein, heteroge 98.2 1.5E-06 5E-11 71.6 5.4 80 195-283 37-121 (126)
147 1x4e_A RNA binding motif, sing 98.2 1.1E-06 3.9E-11 64.8 4.2 60 197-262 2-66 (85)
148 2hvz_A Splicing factor, argini 98.2 4.7E-06 1.6E-10 63.5 7.7 76 202-287 2-79 (101)
149 2yh0_A Splicing factor U2AF 65 98.2 4E-06 1.4E-10 69.6 7.9 78 198-285 2-90 (198)
150 4f02_A Polyadenylate-binding p 98.2 2E-06 6.9E-11 74.1 5.7 79 199-284 102-182 (213)
151 2ytc_A PRE-mRNA-splicing facto 98.2 5.8E-06 2E-10 60.8 7.4 72 197-278 9-82 (85)
152 3nmr_A Cugbp ELAV-like family 98.2 1.8E-06 6E-11 70.1 4.9 81 199-285 2-90 (175)
153 2xnq_A Nuclear polyadenylated 98.1 8.8E-06 3E-10 62.5 8.2 77 195-284 17-96 (97)
154 2g4b_A Splicing factor U2AF 65 98.1 1.2E-05 4E-10 65.3 9.4 77 198-284 2-89 (172)
155 2e44_A Insulin-like growth fac 98.1 6.6E-06 2.2E-10 62.0 6.9 78 197-284 12-93 (96)
156 2qfj_A FBP-interacting repress 98.1 5.2E-06 1.8E-10 69.8 6.5 79 197-283 25-108 (216)
157 2hgn_A Heterogeneous nuclear r 98.1 2.1E-06 7.2E-11 71.6 4.0 82 195-286 41-126 (139)
158 1x5o_A RNA binding motif, sing 98.1 4E-06 1.4E-10 65.2 5.2 59 197-261 22-84 (114)
159 2dnn_A RNA-binding protein 12; 98.1 4.8E-06 1.7E-10 66.4 5.7 78 196-283 12-93 (109)
160 2kvi_A Nuclear polyadenylated 98.1 4.6E-06 1.6E-10 63.5 5.3 79 197-288 7-88 (96)
161 3pgw_S U1-70K; protein-RNA com 98.0 2.4E-05 8.1E-10 76.1 11.4 84 197-287 99-186 (437)
162 2a3j_A U1 small nuclear ribonu 98.0 1.6E-05 5.4E-10 65.1 8.5 79 198-284 27-111 (127)
163 2f3j_A RNA and export factor b 98.0 9E-06 3.1E-10 69.6 7.1 84 196-287 84-171 (177)
164 1x4f_A Matrin 3; structural ge 98.0 3.2E-06 1.1E-10 68.5 3.9 85 197-290 22-109 (112)
165 3q2s_C Cleavage and polyadenyl 98.0 7.5E-06 2.6E-10 72.8 6.4 78 199-282 67-149 (229)
166 2d9o_A DNAJ (HSP40) homolog, s 98.0 6.1E-05 2.1E-09 59.5 10.8 81 200-289 10-96 (100)
167 3pgw_A U1-A; protein-RNA compl 98.0 1.9E-05 6.5E-10 69.9 8.7 80 197-284 6-91 (282)
168 1whx_A Hypothetical protein ri 98.0 1.4E-05 4.7E-10 62.9 7.0 66 198-277 8-78 (111)
169 3smz_A Protein raver-1, ribonu 98.0 1.9E-05 6.7E-10 69.9 8.5 84 197-288 92-180 (284)
170 3md3_A Nuclear and cytoplasmic 98.0 2.3E-05 7.7E-10 62.8 7.8 76 196-279 83-163 (166)
171 2dit_A HIV TAT specific factor 97.9 3.1E-05 1.1E-09 60.7 8.3 85 196-289 11-108 (112)
172 1fje_B Nucleolin RBD12, protei 97.9 1.5E-05 5.1E-10 65.2 6.5 79 196-284 95-175 (175)
173 2g4b_A Splicing factor U2AF 65 97.9 3.2E-05 1.1E-09 62.7 7.9 75 197-279 91-170 (172)
174 2ghp_A U4/U6 snRNA-associated 97.8 3.9E-05 1.3E-09 68.2 8.2 76 196-280 37-115 (292)
175 1wg1_A KIAA1579 protein, homol 97.8 3.1E-05 1.1E-09 57.9 6.3 73 198-282 3-77 (88)
176 3beg_B Splicing factor, argini 97.8 2.3E-05 7.7E-10 62.0 5.7 76 198-285 14-96 (115)
177 2ghp_A U4/U6 snRNA-associated 97.8 7.9E-05 2.7E-09 66.2 9.3 80 196-284 206-292 (292)
178 2adc_A Polypyrimidine tract-bi 97.8 0.00011 3.7E-09 63.9 9.4 79 195-283 29-110 (229)
179 3smz_A Protein raver-1, ribonu 97.7 3.1E-05 1.1E-09 68.5 5.7 83 197-286 181-267 (284)
180 3nmr_A Cugbp ELAV-like family 97.7 2.6E-05 9E-10 63.1 4.7 59 197-261 92-154 (175)
181 3pgw_A U1-A; protein-RNA compl 97.7 9E-05 3.1E-09 65.5 8.4 71 197-277 204-277 (282)
182 1b7f_A Protein (SXL-lethal pro 97.7 3.6E-05 1.2E-09 62.0 5.1 74 197-278 86-166 (168)
183 3sde_A Paraspeckle component 1 97.7 4.1E-05 1.4E-09 68.0 5.6 84 198-286 94-182 (261)
184 3sde_A Paraspeckle component 1 97.7 7.2E-05 2.4E-09 66.4 6.9 76 196-282 18-95 (261)
185 1qm9_A Polypyrimidine tract-bi 97.6 0.00015 5.1E-09 60.7 7.3 75 199-283 2-79 (198)
186 2cq2_A Hypothetical protein LO 97.5 0.00061 2.1E-08 55.4 9.7 74 199-279 24-102 (114)
187 1fxl_A Paraneoplastic encephal 97.5 9.2E-05 3.2E-09 59.2 4.8 70 197-274 85-159 (167)
188 3tyt_A Heterogeneous nuclear r 97.4 0.00045 1.5E-08 60.0 8.8 70 198-280 2-77 (205)
189 3u1l_A PRE-mRNA-splicing facto 97.4 0.00013 4.6E-09 66.3 4.9 79 197-284 131-230 (240)
190 2pe8_A Splicing factor 45; RRM 97.3 0.00059 2E-08 53.8 6.9 61 214-282 26-93 (105)
191 1qm9_A Polypyrimidine tract-bi 97.3 0.00067 2.3E-08 56.6 7.6 77 197-282 117-196 (198)
192 1sjr_A Polypyrimidine tract-bi 97.2 0.0014 4.8E-08 56.5 9.5 61 197-261 41-102 (164)
193 2j8a_A Histone-lysine N-methyl 97.2 0.00072 2.5E-08 57.2 6.8 72 201-278 3-91 (136)
194 2adc_A Polypyrimidine tract-bi 97.1 0.0011 3.8E-08 57.4 7.9 77 197-282 148-227 (229)
195 3tyt_A Heterogeneous nuclear r 97.0 0.001 3.4E-08 57.8 6.5 59 198-261 121-183 (205)
196 1jmt_A Splicing factor U2AF 35 96.9 0.0015 5.2E-08 51.1 5.7 63 209-278 21-101 (104)
197 3zzy_A Polypyrimidine tract-bi 96.8 0.0034 1.2E-07 52.1 7.3 75 197-281 23-102 (130)
198 2wbr_A GW182, gawky, LD47780P; 96.6 0.007 2.4E-07 47.6 7.6 65 202-280 9-78 (89)
199 2diu_A KIAA0430 protein; struc 96.5 0.0098 3.4E-07 47.5 8.2 73 199-288 7-89 (96)
200 2e5i_A Heterogeneous nuclear r 96.5 0.0083 2.8E-07 49.0 7.7 75 198-283 21-102 (124)
201 3tht_A Alkylated DNA repair pr 96.3 0.013 4.3E-07 55.9 9.1 63 196-264 14-80 (345)
202 3v4m_A Splicing factor U2AF 65 96.3 0.0048 1.7E-07 48.4 5.1 62 214-283 28-97 (105)
203 3s6e_A RNA-binding protein 39; 95.5 0.015 5.1E-07 46.7 4.9 60 214-282 30-92 (114)
204 3ue2_A Poly(U)-binding-splicin 95.0 0.025 8.5E-07 45.5 4.7 60 215-282 39-108 (118)
205 2dhx_A Poly (ADP-ribose) polym 92.1 1.3 4.6E-05 35.7 9.9 75 200-286 8-87 (104)
206 3dxb_A Thioredoxin N-terminall 92.0 0.27 9.4E-06 42.0 6.2 60 214-281 142-211 (222)
207 1owx_A Lupus LA protein, SS-B, 89.1 0.39 1.3E-05 39.3 4.3 58 212-275 30-88 (121)
208 3pq1_A Poly(A) RNA polymerase; 87.9 0.38 1.3E-05 47.7 4.1 57 199-262 52-108 (464)
209 2dnr_A Synaptojanin-1; RRM dom 81.9 4.5 0.00015 31.7 7.0 73 200-283 7-86 (91)
210 2hl7_A Cytochrome C-type bioge 72.3 1.9 6.5E-05 33.4 2.3 18 213-231 60-77 (84)
211 2kw0_A CCMH protein; oxidoredu 71.4 2 6.9E-05 33.8 2.3 18 213-231 57-74 (90)
212 3p3d_A Nucleoporin 53; structu 69.2 7.1 0.00024 32.6 5.3 68 209-281 13-97 (132)
213 1ufw_A Synaptojanin 2; RNP dom 68.0 12 0.00041 29.5 6.1 53 216-279 39-91 (95)
214 2l9w_A U4/U6 snRNA-associated- 49.9 84 0.0029 25.7 8.2 66 197-276 18-93 (117)
215 2dzr_A General transcription f 45.5 14 0.00048 29.5 2.9 59 208-272 2-82 (99)
216 1wwh_A Nucleoporin 35, nucleop 41.2 73 0.0025 25.9 6.7 56 198-262 22-78 (119)
217 1whv_A Poly(A)-specific ribonu 32.5 21 0.0007 28.6 2.0 55 197-261 13-67 (100)
218 3ctr_A Poly(A)-specific ribonu 31.9 19 0.00066 28.8 1.7 44 210-261 12-57 (101)
219 2v94_A RPS24, 30S ribosomal pr 30.5 1E+02 0.0035 24.6 5.8 52 205-257 31-87 (107)
220 2dn5_A General transcription f 28.9 16 0.00056 28.6 0.8 61 210-271 4-81 (89)
221 2ed2_A General transcription f 28.9 17 0.00059 29.0 1.0 55 215-275 9-85 (99)
222 2d9b_A Gtfii-I, general transc 27.5 53 0.0018 26.6 3.6 68 215-293 19-108 (109)
223 1i27_A Transcription factor II 26.9 36 0.0012 25.8 2.3 16 209-224 6-21 (73)
224 1xn9_A 30S ribosomal protein S 23.8 1.1E+02 0.0037 24.1 4.8 53 205-259 23-80 (101)
225 1ywx_A 30S ribosomal protein S 21.1 1.3E+02 0.0045 23.8 4.8 50 205-256 23-77 (102)
226 1nha_A TFIIF-alpha, transcript 21.1 48 0.0016 25.6 2.1 16 209-224 15-30 (82)
227 2dn4_A General transcription f 20.5 35 0.0012 27.2 1.3 55 215-275 9-85 (99)
No 1
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.03 E-value=1.7e-09 Score=82.40 Aligned_cols=90 Identities=19% Similarity=0.227 Sum_probs=73.9
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
+.+.+++|| +|.| ++++||+++|. +|| -|+.+.+.. +++..+||+|.|.+.+....++..-+ ...|+
T Consensus 5 ~~~~~~l~V---~nlp~~~t~~~l~~~F~-~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--g~~~~ 76 (99)
T 1whw_A 5 SSGSGRLFV---RNLSYTSSEEDLEKLFS-AYG--PLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVD--GQVFQ 76 (99)
T ss_dssp CCSCEEEEE---ECCCTTCCHHHHHHHHH-TTS--CEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTT--TEESS
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHH-hcC--CEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhC--CCEEC
Confidence 567899999 8998 99999999999 599 456666544 68889999999999999888875322 24789
Q ss_pred CceeEEEecccCCCCCCCCCCCC
Q 045525 272 GKDIRVRRFVPKPAPVASPSTSG 294 (295)
Q Consensus 272 gk~vWarky~pk~~~~~~~~~s~ 294 (295)
|+.+-++...|++.+..+.+.||
T Consensus 77 g~~l~V~~a~~~~~~~~~~~~sG 99 (99)
T 1whw_A 77 GRMLHVLPSTIKKEASQSGPSSG 99 (99)
T ss_dssp SCEEEEEECCCCSTTCCCCCCCC
T ss_pred CcEEEEEEcCCCcccccCCCCCC
Confidence 99999999999998877776665
No 2
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.92 E-value=2.1e-09 Score=82.97 Aligned_cols=88 Identities=22% Similarity=0.403 Sum_probs=71.6
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
.+++.++||| +|.| ++++||+++|.+ || ++.+-.++.+ +++..+||+|.|.+++..+.+|.. + ...|+
T Consensus 12 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~--~~~~~ 83 (105)
T 2dh8_A 12 GADEIGKLFV---GGLDWSTTQETLRSYFSQ-YG-EVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-R--PHTLD 83 (105)
T ss_dssp CSSSSSEECC---BSCCTTCCHHHHHHHHHT-TS-CEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-C--SEEET
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cC-CeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-C--CCeEC
Confidence 4677899998 8988 999999999995 99 5544444444 678889999999999999998876 2 36899
Q ss_pred CceeEEEecccCCCCCCCCC
Q 045525 272 GKDIRVRRFVPKPAPVASPS 291 (295)
Q Consensus 272 gk~vWarky~pk~~~~~~~~ 291 (295)
|+.+-++...||+..+..++
T Consensus 84 g~~l~V~~a~~~~~~~~~~~ 103 (105)
T 2dh8_A 84 GRNIDPKPCTPRGMQPSGPS 103 (105)
T ss_dssp TEEEBCCCSCCSSCCTTCSC
T ss_pred CEEEEEEEccCCCCCCCCCC
Confidence 99999999999887765443
No 3
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.91 E-value=6.2e-09 Score=81.98 Aligned_cols=84 Identities=17% Similarity=0.288 Sum_probs=66.9
Q ss_pred CCCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCCCCcccEE
Q 045525 195 NDADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGENELKQFD 269 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g~~~~kf~ 269 (295)
..+++.+++|| +|.| ++++||+++|. +|| . |+.+.|-. +++..+||+|.|.+++....++.... ..
T Consensus 20 ~~~~~~~~lfV---~nLp~~~te~~L~~~F~-~~G-~-i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~---~~ 90 (109)
T 2rs2_A 20 HMGSSGCKMFI---GGLSWQTTQEGLREYFG-QFG-E-VKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR---HE 90 (109)
T ss_dssp ------CCEEE---ESCCTTCCHHHHHHHHT-TTS-C-EEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC---EE
T ss_pred ccCCCCCEEEE---eCCCCCCCHHHHHHHHH-ccC-C-eEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC---Cc
Confidence 45778899999 8888 99999999999 599 4 55555544 68899999999999999999998643 78
Q ss_pred ECCceeEEEecccCCCCC
Q 045525 270 IHGKDIRVRRFVPKPAPV 287 (295)
Q Consensus 270 Ingk~vWarky~pk~~~~ 287 (295)
++|+.+-++...||+..+
T Consensus 91 l~g~~l~V~~a~~~~~~~ 108 (109)
T 2rs2_A 91 LDSKTIDPKVAFPRRAQP 108 (109)
T ss_dssp ETTEEEEEEECCCCCCCC
T ss_pred CCCEEEEEEEccCCCCCC
Confidence 999999999999887654
No 4
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.89 E-value=7.2e-09 Score=79.13 Aligned_cols=88 Identities=20% Similarity=0.358 Sum_probs=69.6
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
.+.+.+++|| +|.| ++++||+++|.+ || .+.+-.++.+ +++..+||+|.|.+++....++. .+ ...|+
T Consensus 6 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~--~~~~~ 77 (99)
T 2dgs_A 6 SGSKSNKIFV---GGIPHNCGETELREYFKK-FG-VVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MH--FHDIM 77 (99)
T ss_dssp CCSSCCEEEE---ESCCSSCCHHHHHHHHSS-SS-CEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HC--CCBSS
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cC-CeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hC--CCEEC
Confidence 3567799999 8988 999999999995 99 5444444444 68889999999999999888875 22 23689
Q ss_pred CceeEEEecccCCCCCCCCC
Q 045525 272 GKDIRVRRFVPKPAPVASPS 291 (295)
Q Consensus 272 gk~vWarky~pk~~~~~~~~ 291 (295)
|+.+-++...|++.++..|+
T Consensus 78 g~~l~V~~a~~~~~~~~~~~ 97 (99)
T 2dgs_A 78 GKKVEVKRAEPRDSKSSGPS 97 (99)
T ss_dssp SCBCEEEECCCCCCCCCCSS
T ss_pred CeEEEEEECCCCcccCCCCC
Confidence 99999999999887765544
No 5
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.87 E-value=8.7e-09 Score=79.83 Aligned_cols=90 Identities=17% Similarity=0.276 Sum_probs=71.9
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCCCCcc----
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGENELK---- 266 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g~~~~---- 266 (295)
.+.+.++||| +|.| ++++||+++|. +|| . |+.|.+.. +++..+||+|.|.+.+....++...+..
T Consensus 11 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~-~~G-~-i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~ 84 (111)
T 1x4h_A 11 DVTEGKTVFI---RNLSFDSEEEALGEVLQ-QFG-D-LKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGG 84 (111)
T ss_dssp CCCCCCCEEE---ESCCTTCCHHHHHHHHH-TTS-C-EEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTC
T ss_pred cCCCCCEEEE---ECCCCCCCHHHHHHHHH-hcC-C-eEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccC
Confidence 3567899999 8988 99999999998 599 4 56666553 6788999999999999988888743211
Q ss_pred cEEECCceeEEEecccCCCCCCCCC
Q 045525 267 QFDIHGKDIRVRRFVPKPAPVASPS 291 (295)
Q Consensus 267 kf~Ingk~vWarky~pk~~~~~~~~ 291 (295)
...|+|+.+-++...||+.....++
T Consensus 85 ~~~~~g~~l~v~~a~~~~~~~~~~~ 109 (111)
T 1x4h_A 85 GLKLDGRQLKVDLAVTRDEAASGPS 109 (111)
T ss_dssp CEESSSCEEEEECCCCCCCCCCCCC
T ss_pred CcEEcCEEEEEEECCCCccCCCCCC
Confidence 4688999999999999877665443
No 6
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=9.3e-09 Score=78.72 Aligned_cols=89 Identities=24% Similarity=0.335 Sum_probs=71.2
Q ss_pred CCCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEe-ec--cCCCCceEEEEecCHHHHHHHhCCCCcccEE
Q 045525 195 NDADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKM-GC--CRDQSLYARVIVRSPAYITLILGENELKQFD 269 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M-~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~ 269 (295)
..+++.+++|| +|.| ++++||+++|.+ || . |+.|.+ .+ +++..+||+|.|.+++....++..- ....
T Consensus 7 ~~~~~~~~l~V---~nLp~~~t~~~l~~~f~~-~G-~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~ 78 (102)
T 2cqb_A 7 GMATTKRVLYV---GGLAEEVDDKVLHAAFIP-FG-D-ITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM--NESE 78 (102)
T ss_dssp CSCCCCSCEEE---ESCCSSCCHHHHHHHHTT-TS-C-CCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHH--TTEE
T ss_pred CcCCCCCEEEE---eCCCCCCCHHHHHHHhhc-cC-C-EEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHh--CCCE
Confidence 34678899999 8888 999999999995 99 5 444554 43 6888999999999999988877531 1247
Q ss_pred ECCceeEEEecccCCCCCCCCC
Q 045525 270 IHGKDIRVRRFVPKPAPVASPS 291 (295)
Q Consensus 270 Ingk~vWarky~pk~~~~~~~~ 291 (295)
|+|+.+-++...|++.+...|+
T Consensus 79 ~~g~~l~V~~a~~~~~~~~~~~ 100 (102)
T 2cqb_A 79 LFGRTIRVNLAKPMRIKESGPS 100 (102)
T ss_dssp ETTEEEEEEECCCCCCCCCCCC
T ss_pred ECCcEEEEEeCCCCCCCCCCCC
Confidence 8999999999999888776554
No 7
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=8.3e-09 Score=77.34 Aligned_cols=83 Identities=23% Similarity=0.358 Sum_probs=67.8
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCce
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGKD 274 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~ 274 (295)
+...|++|| +|.| ++++||+++|. +|| . |+.+.|- ..+.+||+|.|.+++..+.+ +|. .+.++|+.
T Consensus 2 ~~~~~~l~V---~nLp~~~te~~l~~~F~-~~G-~-i~~v~i~--~~~~g~afV~f~~~~~a~~~-~~~---~~~~~g~~ 69 (88)
T 1wf0_A 2 SSGSSGVFV---GRCTGDMTEDELREFFS-QYG-D-VMDVFIP--KPFRAFAFVTFADDQIAQSL-CGE---DLIIKGIS 69 (88)
T ss_dssp CSCCCEEEE---ESCCSSSCHHHHHHHST-TTS-C-CCEEECC--SSCCSCCEEECSCHHHHHHT-TTC---EEEETTEE
T ss_pred CCCCcEEEE---eCCCCCCCHHHHHHHHH-HcC-C-eeEEEEe--cCCCCEEEEEECCHHHHHHH-hcC---CceeCCEE
Confidence 346799999 8988 99999999998 599 4 6667763 34789999999999998764 553 68999999
Q ss_pred eEEEecccCCCCCCCCC
Q 045525 275 IRVRRFVPKPAPVASPS 291 (295)
Q Consensus 275 vWarky~pk~~~~~~~~ 291 (295)
+.+....||+.....|+
T Consensus 70 l~v~~a~~~~~~~~~~~ 86 (88)
T 1wf0_A 70 VHISNAEPKHNSNSGPS 86 (88)
T ss_dssp EEEECCCCCCCCCSCSS
T ss_pred EEEEecCCCCCCCCCCC
Confidence 99999999887765544
No 8
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.83 E-value=2.6e-08 Score=76.45 Aligned_cols=83 Identities=14% Similarity=0.194 Sum_probs=68.7
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEe-ec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEE
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKM-GC--CRDQSLYARVIVRSPAYITLILGENELKQFDI 270 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M-~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~I 270 (295)
..++.+++|| +|.| ++++||+++|. +|| + |+.+.| .+ +++..+||+|.|.+.+....+|.. ...|
T Consensus 11 ~~~~~~~l~v---~nlp~~~t~~~l~~~F~-~~G-~-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~----~~~~ 80 (103)
T 2cqg_A 11 AVQKTSDLIV---LGLPWKTTEQDLKEYFS-TFG-E-VLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ----RHMI 80 (103)
T ss_dssp CCCCCCCEEE---ESCCSSCCHHHHHHHHG-GGS-C-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS----CEEE
T ss_pred ccCCCCEEEE---EcCCCcCCHHHHHHHHH-hcC-C-eEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc----CCee
Confidence 4567799999 8888 99999999998 599 5 555554 43 688899999999999999999984 3489
Q ss_pred CCceeEEEecccCCCCCC
Q 045525 271 HGKDIRVRRFVPKPAPVA 288 (295)
Q Consensus 271 ngk~vWarky~pk~~~~~ 288 (295)
+|+.+-++...||.....
T Consensus 81 ~g~~l~v~~a~~~~~~~~ 98 (103)
T 2cqg_A 81 DGRWCDCKLPNSKQSQDS 98 (103)
T ss_dssp TTEEEEEECCCTTCCCCC
T ss_pred CCeEEEEEecCCCCcCCC
Confidence 999999999999877654
No 9
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=1.5e-08 Score=76.43 Aligned_cols=87 Identities=16% Similarity=0.259 Sum_probs=68.1
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEe-ec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKM-GC--CRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M-~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
+++.+++|| +|.| ++++||+++|. +|| + |+.+.+ .+ +++..+||+|.|.+++....++...+. ..|+
T Consensus 2 ~~~~~~l~v---~nlp~~~t~~~l~~~f~-~~G-~-v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~ 73 (95)
T 2dnz_A 2 SSGSSGLYV---GSLHFNITEDMLRGIFE-PFG-K-IDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNG--FELA 73 (95)
T ss_dssp CSCCCEEEE---ESCCTTCCHHHHHHHHT-TTS-C-EEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTT--CCSS
T ss_pred CCCCcEEEE---eCCCCCCCHHHHHHHHH-hcC-C-EeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCC--CeeC
Confidence 567799999 7888 99999999998 599 5 455544 43 688899999999999998877653111 3579
Q ss_pred CceeEEEecccCCCCCCCCC
Q 045525 272 GKDIRVRRFVPKPAPVASPS 291 (295)
Q Consensus 272 gk~vWarky~pk~~~~~~~~ 291 (295)
|+.+-++...||......|+
T Consensus 74 g~~l~V~~a~~~~~~~~~~~ 93 (95)
T 2dnz_A 74 GRPMRVGHVTERLDGGSGPS 93 (95)
T ss_dssp SSCCEEEESSCCCCCCCCCC
T ss_pred CcEEEEEEcccccCCCCCCC
Confidence 99999999998877665443
No 10
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=2.6e-08 Score=75.19 Aligned_cols=87 Identities=15% Similarity=0.117 Sum_probs=68.5
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeE-EEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVED-IKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~-v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
+.+.+++|| +|.| ++++||+++|.+ || .+..- -.+.+ +++..+||+|.|.+++..+.++...+. ..|+
T Consensus 2 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G-~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g--~~~~ 74 (96)
T 1x5t_A 2 SSGSSGIFI---GNLDPEIDEKLLYDTFSA-FG-VILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG--QYLC 74 (96)
T ss_dssp CSCCCEEEE---ECCCTTCCHHHHHHHHHT-TS-CBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTT--CEET
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cC-CeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCC--CEEC
Confidence 456789999 8998 999999999995 99 54333 23333 788899999999999999988875333 3489
Q ss_pred CceeEEEecccCCCCCCCC
Q 045525 272 GKDIRVRRFVPKPAPVASP 290 (295)
Q Consensus 272 gk~vWarky~pk~~~~~~~ 290 (295)
|+.+-++...|++.+...+
T Consensus 75 g~~l~v~~a~~~~~~~~~~ 93 (96)
T 1x5t_A 75 NRPITVSYAFKKDSKGSGP 93 (96)
T ss_dssp TEECEEEESCCCCCCCCCC
T ss_pred CEEEEEEEecccCCCCCCC
Confidence 9999999998887766443
No 11
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.81 E-value=1.2e-08 Score=79.97 Aligned_cols=88 Identities=19% Similarity=0.284 Sum_probs=68.9
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEe-ec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEE
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKM-GC--CRDQSLYARVIVRSPAYITLILGENELKQFDI 270 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M-~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~I 270 (295)
..++.++||| +|.| ++++||+++|. +|| . |+.+.| .+ +++..+||+|.|.+.+....++..-+ ...|
T Consensus 21 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~-~~G-~-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~--g~~~ 92 (115)
T 2cpz_A 21 EGPEGANLFI---YHLPQEFGDQDLLQMFM-PFG-N-VVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMN--GFQI 92 (115)
T ss_dssp CCSTTCCEEE---ESCCSSCCHHHHHHHHG-GGS-C-CSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHT--TCEE
T ss_pred CCCCCcEEEE---eCCCCCCCHHHHHHHHH-hcC-C-eEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcC--CCEE
Confidence 3456799999 8998 99999999999 599 5 455544 33 67888999999999999888774311 1368
Q ss_pred CCceeEEEecccCCCCCCCCC
Q 045525 271 HGKDIRVRRFVPKPAPVASPS 291 (295)
Q Consensus 271 ngk~vWarky~pk~~~~~~~~ 291 (295)
+|+.+-++...|++.....|+
T Consensus 93 ~g~~l~V~~a~~~~~~~~~~~ 113 (115)
T 2cpz_A 93 GMKRLKVQLKRSKNDSKSGPS 113 (115)
T ss_dssp TTEECEEECCCCSCCCCCCCC
T ss_pred CCEEEEEEEcCCCCcCCCCCC
Confidence 999999999988877665443
No 12
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.80 E-value=2.1e-08 Score=76.70 Aligned_cols=88 Identities=16% Similarity=0.212 Sum_probs=68.0
Q ss_pred CCCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCCCCcccEE
Q 045525 195 NDADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGENELKQFD 269 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g~~~~kf~ 269 (295)
..+++.+++|| +|.| ++++||+++|.+ || . |+.+.+.. +++..+||+|.|.+++....++..-+. ..
T Consensus 7 ~~~~~~~~l~v---~nLp~~~t~~~l~~~f~~-~G-~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~ 78 (102)
T 1x5s_A 7 GMASDEGKLFV---GGLSFDTNEQSLEQVFSK-YG-Q-ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNG--KS 78 (102)
T ss_dssp CCCCCCSEEEE---ESCCTTCCHHHHHHHHHH-HS-C-CCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTT--CC
T ss_pred CCCCCCCEEEE---ECCCCCCCHHHHHHHHHh-cC-C-eEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCC--CE
Confidence 45678899999 8888 999999999994 99 5 55555544 677889999999999998777742111 14
Q ss_pred ECCceeEEEecccCCCCCCCC
Q 045525 270 IHGKDIRVRRFVPKPAPVASP 290 (295)
Q Consensus 270 Ingk~vWarky~pk~~~~~~~ 290 (295)
|+|+.+-++...|++.....|
T Consensus 79 ~~g~~l~v~~a~~~~~~~~~~ 99 (102)
T 1x5s_A 79 VDGRQIRVDQAGKSSDNRSGP 99 (102)
T ss_dssp TTSCCCEEEEEECCCCCCCCC
T ss_pred ECCeEEEEEECCCCCCCCCCC
Confidence 799999999888877665443
No 13
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.80 E-value=1.9e-08 Score=76.92 Aligned_cols=80 Identities=14% Similarity=0.169 Sum_probs=65.6
Q ss_pred ceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEe-ec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCcee
Q 045525 201 RTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKM-GC--CRDQSLYARVIVRSPAYITLILGENELKQFDIHGKDI 275 (295)
Q Consensus 201 Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M-~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~v 275 (295)
+++|| +|.| +||+||+++|.+ || .-|++|.+ .+ ++++.+||+|.|.+++.....|... .-.+.|+|+.+
T Consensus 2 ~~i~v---~nLp~~~te~~l~~~F~~-~G-~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~-~~~~~~~gr~i 75 (91)
T 2lxi_A 2 NIVML---RMLPQAATEDDIRGQLQS-HG-VQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEAN-QHSLNILGQKV 75 (91)
T ss_dssp CEEEE---ETCCSSCCHHHHHHHHHH-HT-CCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTT-TTEEEETTEEE
T ss_pred CEEEE---eCCCCCCCHHHHHHHHHH-hC-CEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhc-CCCeEECCEEE
Confidence 57888 9999 999999999995 99 55666654 33 7899999999999999999888642 12467999999
Q ss_pred EEEecccCCCC
Q 045525 276 RVRRFVPKPAP 286 (295)
Q Consensus 276 Warky~pk~~~ 286 (295)
-++...||++.
T Consensus 76 ~V~~a~~~~~~ 86 (91)
T 2lxi_A 76 SMHYSDPKPKI 86 (91)
T ss_dssp EEECCCSCCCC
T ss_pred EEEEcCCCCCC
Confidence 99988888654
No 14
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.79 E-value=2e-08 Score=77.17 Aligned_cols=88 Identities=20% Similarity=0.196 Sum_probs=69.4
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCCCCcccEEE
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGENELKQFDI 270 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g~~~~kf~I 270 (295)
-.++.+++|| +|.| ++++||+++|. +|| . |+.+.+.. +++..+||+|.|.+++..+.++..-+. ..+
T Consensus 9 ~~~~~~~l~V---~nLp~~~t~~~l~~~f~-~~G-~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~ 80 (103)
T 2dnm_A 9 DVDGMITLKV---DNLTYRTSPDSLRRVFE-KYG-R-VGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDG--AEL 80 (103)
T ss_dssp CCSCCCEEEE---ESCCTTCCHHHHHHHHT-TTS-C-EEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSS--CCB
T ss_pred CCCCCeEEEE---eCCCCCCCHHHHHHHHH-hcC-C-EEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCC--CEE
Confidence 3566799999 8988 99999999999 599 4 66666654 588899999999999988777653111 248
Q ss_pred CCceeEEEecccCCCCCCCCC
Q 045525 271 HGKDIRVRRFVPKPAPVASPS 291 (295)
Q Consensus 271 ngk~vWarky~pk~~~~~~~~ 291 (295)
+|+.+-++...++++....|+
T Consensus 81 ~g~~l~V~~a~~~~~~~~~~~ 101 (103)
T 2dnm_A 81 DGRELRVQVARYGRRDLSGPS 101 (103)
T ss_dssp TTBCCEEEECSSCCSCCCCCS
T ss_pred CCcEEEEEECCcCCCCCCCCC
Confidence 999999999988877766554
No 15
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.79 E-value=3.7e-08 Score=75.63 Aligned_cols=89 Identities=17% Similarity=0.245 Sum_probs=69.7
Q ss_pred CCCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec-cCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 195 NDADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC-CRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~-~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
..+.+.+++|| +|.| ++++||+++|.+ || . |+.|.|.. .+....||+|.|.+.+..+.++..-+ ...|+
T Consensus 10 ~~~~~~~~l~V---~nlp~~~t~~~l~~~f~~-~G-~-v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~--g~~~~ 81 (103)
T 2cq3_A 10 ESKSTPKRLHV---SNIPFRFRDPDLRQMFGQ-FG-K-ILDVEIIFNERGSKGFGFVTFENSADADRAREKLH--GTVVE 81 (103)
T ss_dssp CCSCCCCEEEE---ESCCTTCCHHHHHHHGGG-TS-C-EEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHT--TCEET
T ss_pred CCCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cC-C-eEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhC--CCEEC
Confidence 44667899999 8988 999999999995 99 4 55665544 55578999999999999888775311 12589
Q ss_pred CceeEEEecccCCCCCCCCC
Q 045525 272 GKDIRVRRFVPKPAPVASPS 291 (295)
Q Consensus 272 gk~vWarky~pk~~~~~~~~ 291 (295)
|+.+-++...|++.+...|+
T Consensus 82 g~~l~v~~a~~~~~~~~~~~ 101 (103)
T 2cq3_A 82 GRKIEVNNATARVMTNSGPS 101 (103)
T ss_dssp TEECEEEECCSSCCCCCSSC
T ss_pred CEEEEEEEcccCCCCCCCCC
Confidence 99999999999887765543
No 16
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.79 E-value=1.8e-08 Score=76.51 Aligned_cols=86 Identities=16% Similarity=0.203 Sum_probs=67.6
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec-c---C--CCCceEEEEecCHHHHHHHhCCCCcccE
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC-C---R--DQSLYARVIVRSPAYITLILGENELKQF 268 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~-~---~--~qplfarivf~s~~~v~~vL~g~~~~kf 268 (295)
+.+.+++|| +|.| ++++||+++|. +|| + |+.+.+.. . + +..+||+|.|.+++....++..-+. .
T Consensus 2 s~~~~~l~V---~nLp~~~t~~~l~~~F~-~~G-~-i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g--~ 73 (98)
T 2cpf_A 2 SSGSSGLFI---KNLNFSTTEETLKGVFS-KVG-A-IKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQG--H 73 (98)
T ss_dssp CCCCCCEEE---ESCCTTCCHHHHHHHHH-TTS-C-EEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTT--C
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHH-hcC-C-eEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCC--C
Confidence 457799999 8988 99999999999 599 4 56666554 2 2 6789999999999998888764222 2
Q ss_pred EECCceeEEEecccCCCCCCCC
Q 045525 269 DIHGKDIRVRRFVPKPAPVASP 290 (295)
Q Consensus 269 ~Ingk~vWarky~pk~~~~~~~ 290 (295)
.|+|+.+-++...|++++...|
T Consensus 74 ~~~g~~l~V~~a~~~~~~~~~~ 95 (98)
T 2cpf_A 74 TVDGHKLEVRISERATKPASGP 95 (98)
T ss_dssp EETTEECEEECSSCSSCCCCCC
T ss_pred eeCCeEEEEEEccCCCCCCCCC
Confidence 6899999999998887665544
No 17
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.78 E-value=2.8e-08 Score=77.24 Aligned_cols=88 Identities=20% Similarity=0.324 Sum_probs=70.4
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCc
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGK 273 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk 273 (295)
.+.+.++||| +|.| ++++||+++|.+ || -|+.+.+...++...||+|.|.+++..+.++...+. ..|+|+
T Consensus 18 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G--~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~ 89 (109)
T 1x4a_A 18 AGNNDCRIYV---GNLPPDIRTKDIEDVFYK-YG--AIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG--YDYDGY 89 (109)
T ss_dssp CCCCSSEEEE---ESCCTTCCHHHHHHHHGG-GS--CEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTT--CEETTE
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cC--CeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCC--CEECCe
Confidence 4567899999 8888 999999999995 99 567777766667889999999999998887743111 368999
Q ss_pred eeEEEecccCCCCCCCCC
Q 045525 274 DIRVRRFVPKPAPVASPS 291 (295)
Q Consensus 274 ~vWarky~pk~~~~~~~~ 291 (295)
.+-++...|+++....++
T Consensus 90 ~l~V~~a~~~~~~~~~~~ 107 (109)
T 1x4a_A 90 RLRVEFPRSGRGTGSGPS 107 (109)
T ss_dssp ECEEECCCCCCCCCCCSC
T ss_pred EEEEEEcccCCCCCCCCC
Confidence 999999988877665443
No 18
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.78 E-value=2.7e-08 Score=77.84 Aligned_cols=84 Identities=15% Similarity=0.154 Sum_probs=67.7
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCCCCcccEEE
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGENELKQFDI 270 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g~~~~kf~I 270 (295)
.+.+.++||| +|.| ++++||+++|. +|| . |+.|.+.. +++..+||+|.|.+++....++...+. ..|
T Consensus 11 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~-~~G-~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~ 82 (115)
T 2dgo_A 11 DTSNHFHVFV---GDLSPEITTEDIKAAFA-PFG-R-ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG--QWL 82 (115)
T ss_dssp CSTTCEEEEE---ESCCTTCCHHHHHHHHG-GGS-C-EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTT--CEE
T ss_pred CCCCCcEEEE---eCCCCCCCHHHHHHHHH-hcC-C-eEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCC--CEE
Confidence 4667899999 8998 99999999999 599 4 56665544 678889999999999998888753222 368
Q ss_pred CCceeEEEecccCCCCC
Q 045525 271 HGKDIRVRRFVPKPAPV 287 (295)
Q Consensus 271 ngk~vWarky~pk~~~~ 287 (295)
+|+.+-++...|+++++
T Consensus 83 ~g~~l~V~~a~~~~~~~ 99 (115)
T 2dgo_A 83 GGRQIRTNWATRKPPAP 99 (115)
T ss_dssp TTEECEEEESSCCCCCS
T ss_pred CCEEEEEEEccCCCCCC
Confidence 99999999888776654
No 19
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.77 E-value=1.6e-08 Score=77.50 Aligned_cols=88 Identities=19% Similarity=0.185 Sum_probs=69.7
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCc
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGK 273 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk 273 (295)
.+.+.+++|| +|.| ++++||+++|.+ || ++ .+.....++..+||+|.|.+++....++...+ ...|+|+
T Consensus 11 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~g-~v--~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~--g~~~~g~ 81 (101)
T 2fc9_A 11 WSGESKTLVL---SNLSYSATEETLQEVFEK-AT-FI--KVPQNQNGKSKGYAFIEFASFEDAKEALNSCN--KREIEGR 81 (101)
T ss_dssp CSCCCSEEEE---ESCCTTCCHHHHHHHCSS-CS-EE--ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTS--SEEETTE
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-CC-EE--EEEECCCCCEeeEEEEEECCHHHHHHHHHHhC--CCEeCCe
Confidence 4667899999 8988 999999999995 99 44 22222278889999999999999888876422 2578999
Q ss_pred eeEEEecccCCCCCCCCCC
Q 045525 274 DIRVRRFVPKPAPVASPST 292 (295)
Q Consensus 274 ~vWarky~pk~~~~~~~~~ 292 (295)
.+-++...|++++...|++
T Consensus 82 ~l~v~~a~~~~~~~~~~~~ 100 (101)
T 2fc9_A 82 AIRLELQGPRGSPNSGPSS 100 (101)
T ss_dssp EEEEEECSSCCCCCCCSSC
T ss_pred EEEEEEcCCCCCCCCCCCC
Confidence 9999999998777665554
No 20
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.76 E-value=2e-08 Score=79.27 Aligned_cols=83 Identities=8% Similarity=0.015 Sum_probs=67.5
Q ss_pred CCCCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEe-ec-cCCCCceEEEEecCHHHHHHHhCCCCcccEE
Q 045525 194 ANDADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKM-GC-CRDQSLYARVIVRSPAYITLILGENELKQFD 269 (295)
Q Consensus 194 ~~v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M-~~-~~~qplfarivf~s~~~v~~vL~g~~~~kf~ 269 (295)
...+.+.+|+|| +|.| ++++||++||.. || .+-+.|.| .+ +++..+||+|.|.+++....+|.. + ...
T Consensus 9 ~~~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~g-~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~--~~~ 80 (114)
T 2cpy_A 9 GDVNSAKVCAHI---TNIPFSITKMDVLQFLEG-IP-VDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-H--RKK 80 (114)
T ss_dssp CSCCSCCCEEEE---ESCCTTSCHHHHHHHTTT-SC-CCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-C--SEE
T ss_pred CCCCCCccEEEE---eCcCCcCCHHHHHHHHHh-CC-CcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-C--CCc
Confidence 356788899999 8999 999999999995 99 43144444 33 788999999999999999999875 2 368
Q ss_pred ECCceeEEEecccCC
Q 045525 270 IHGKDIRVRRFVPKP 284 (295)
Q Consensus 270 Ingk~vWarky~pk~ 284 (295)
|+|+.+.++...|+.
T Consensus 81 ~~gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 81 LNGREAFVHVVTLED 95 (114)
T ss_dssp ETTEEEEEEEECHHH
T ss_pred cCCeEEEEEECCHHH
Confidence 999999998887765
No 21
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.76 E-value=1.3e-08 Score=78.22 Aligned_cols=86 Identities=15% Similarity=0.157 Sum_probs=69.0
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
.++.+++|| +|.| ++++||+++|. +|| . |+.|.+.. +++..+||+|.|.+++....++...+. ..|+
T Consensus 12 ~~~~~~l~V---~nlp~~~t~~~l~~~f~-~~G-~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~ 83 (103)
T 2cq0_A 12 ADDNATIRV---TNLSEDTRETDLQELFR-PFG-S-ISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG--FGYD 83 (103)
T ss_dssp CSSSEEEEE---ESCCTTCCHHHHHTTST-TTC-C-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTT--CEET
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHH-hCC-C-eEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCC--CeeC
Confidence 567899999 8998 99999999999 599 4 55555543 678889999999999998888764222 3589
Q ss_pred CceeEEEecccCCCCCCCC
Q 045525 272 GKDIRVRRFVPKPAPVASP 290 (295)
Q Consensus 272 gk~vWarky~pk~~~~~~~ 290 (295)
|+.+-++...|++.+..+|
T Consensus 84 g~~l~v~~a~~~~~~~~~~ 102 (103)
T 2cq0_A 84 HLILNVEWAKPSTNSGPSS 102 (103)
T ss_dssp TEECEEEESSCCCCSCCCC
T ss_pred CcEEEEEECCCCCCCCCCC
Confidence 9999999998887766544
No 22
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.76 E-value=4.7e-08 Score=76.72 Aligned_cols=86 Identities=17% Similarity=0.300 Sum_probs=70.0
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEECC
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIHG 272 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ing 272 (295)
+++.++||| +|.| ++++||+++|. +|| .+..-.++.+ +++..+||+|.|.+++....+|.. + ...|+|
T Consensus 24 ~~~~~~l~V---~nLp~~~te~~l~~~F~-~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~--~~~~~g 95 (116)
T 1x4b_A 24 KEQFRKLFI---GGLSFETTEESLRNYYE-QWG-KLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-R--PHSIDG 95 (116)
T ss_dssp HHHHTEEEE---ECCTTCCCHHHHHHHHT-SSC-CCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-C--SEEETT
T ss_pred cCCCCEEEE---eCCCCCCCHHHHHHHHH-hcC-CEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-C--CcEECC
Confidence 456699999 8988 99999999998 599 5544444444 688899999999999999999987 3 357899
Q ss_pred ceeEEEecccCCCCCCCC
Q 045525 273 KDIRVRRFVPKPAPVASP 290 (295)
Q Consensus 273 k~vWarky~pk~~~~~~~ 290 (295)
+.+-++...||......+
T Consensus 96 ~~l~V~~a~~~~~~~~~~ 113 (116)
T 1x4b_A 96 RVVEPKRAVAREESGSGP 113 (116)
T ss_dssp EEEEEECCSSCCCCCCSC
T ss_pred EEEEEEECCCCccCCCCC
Confidence 999999999987765433
No 23
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.76 E-value=4.8e-08 Score=75.30 Aligned_cols=85 Identities=16% Similarity=0.194 Sum_probs=70.1
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---c-CCCCceEEEEecCHHHHHHHhCCCCcccEEE
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---C-RDQSLYARVIVRSPAYITLILGENELKQFDI 270 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~-~~qplfarivf~s~~~v~~vL~g~~~~kf~I 270 (295)
.+..+++|| +|.| ++++||+++|.. || |+.|.|-. + ++..+||+|.|.+++....+| . .....|
T Consensus 12 ~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G---i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~--l~g~~~ 81 (104)
T 1wi8_A 12 KSPPYTAFL---GNLPYDVTEESIKEFFRG-LN---ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-S--LNEESL 81 (104)
T ss_dssp SSSCEEEEE---ESCCSSCCHHHHHHHTTT-SC---EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-G--GGTCEE
T ss_pred CCCCCEEEE---eCCCCcCCHHHHHHHHHH-CC---ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-h--cCCCEe
Confidence 456689999 8888 999999999995 88 66666654 3 788999999999999998888 4 233468
Q ss_pred CCceeEEEecccCCCCCCCCC
Q 045525 271 HGKDIRVRRFVPKPAPVASPS 291 (295)
Q Consensus 271 ngk~vWarky~pk~~~~~~~~ 291 (295)
+|+.+.++...||+.+...++
T Consensus 82 ~g~~l~V~~a~~~~~~~~~~~ 102 (104)
T 1wi8_A 82 GNKRIRVDVADQAQDKDSGPS 102 (104)
T ss_dssp TTEECEEEECCCCCCCCCCCC
T ss_pred CCcEEEEEEccCCCCCCCCCC
Confidence 999999999999988776554
No 24
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=1.1e-07 Score=74.54 Aligned_cols=81 Identities=20% Similarity=0.226 Sum_probs=67.4
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCCCCcccEEE
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGENELKQFDI 270 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g~~~~kf~I 270 (295)
...+.++||| +|.| ++++||+++|. +|| . |+.+.+-. +++...||+|.|.+++....++...+. .|
T Consensus 13 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~-~~G-~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~---~~ 83 (116)
T 2cqd_A 13 KDTTFTKIFV---GGLPYHTTDASLRKYFE-GFG-D-IEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP---II 83 (116)
T ss_dssp CSCSSSEEEE---ECCCSSCCHHHHHHHHH-TTS-C-EEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC---EE
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHH-hCC-C-eeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC---cC
Confidence 3567899999 8888 99999999999 599 4 66665544 688899999999999999999997653 69
Q ss_pred CCceeEEEecccCCC
Q 045525 271 HGKDIRVRRFVPKPA 285 (295)
Q Consensus 271 ngk~vWarky~pk~~ 285 (295)
+|+.+-++...++..
T Consensus 84 ~g~~l~V~~a~~~~~ 98 (116)
T 2cqd_A 84 DGRKANVNLAYLGAK 98 (116)
T ss_dssp TTEECEEEESTTTCC
T ss_pred CCEEEEEEEcccCCC
Confidence 999999998866543
No 25
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=5.7e-08 Score=75.11 Aligned_cols=85 Identities=19% Similarity=0.168 Sum_probs=69.6
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEee--c--cCCCCceEEEEecCHHHHHHHhCCCCcccEEE
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMG--C--CRDQSLYARVIVRSPAYITLILGENELKQFDI 270 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~--~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~I 270 (295)
+.+.+++|| +|.| ++++||+++|.+ || ..|+.+.+- + +++..+||+|.|.+.+....++..-+.-.+.+
T Consensus 5 s~~~~~l~V---~nLp~~~t~~~l~~~f~~-~G-~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~ 79 (109)
T 2dis_A 5 SSGNCRLFI---GGIPKMKKREEILEEIAK-VT-EGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL 79 (109)
T ss_dssp CCCSEEEEE---ECCCTTSCHHHHHHHHHH-HS-TTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB
T ss_pred ccCCCEEEE---eCCCCcCCHHHHHHHHHH-hc-CCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCcee
Confidence 557899999 8998 999999999995 99 657777775 2 57899999999999999999887532113578
Q ss_pred CCceeEEEecccCCCC
Q 045525 271 HGKDIRVRRFVPKPAP 286 (295)
Q Consensus 271 ngk~vWarky~pk~~~ 286 (295)
+|+.+-++...|++.+
T Consensus 80 ~g~~l~V~~a~~~~~~ 95 (109)
T 2dis_A 80 WGHQIAVDWAEPEIDV 95 (109)
T ss_dssp TTBCCEEEESCSSCST
T ss_pred cCCeEEEEEcCCCCCc
Confidence 9999999988888764
No 26
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=9e-08 Score=73.46 Aligned_cols=85 Identities=18% Similarity=0.234 Sum_probs=66.0
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec-cCCCCceEEEEecCHHHHHHHhCCCCcccEEECC
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC-CRDQSLYARVIVRSPAYITLILGENELKQFDIHG 272 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~-~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ing 272 (295)
...+.++||| +|.| ++++||+++|. +|| . |+.|.|.. .+...+||+|.|.+++....++..-+ ...|+|
T Consensus 11 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~-~~G-~-i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~--g~~~~g 82 (103)
T 2cqi_A 11 DDGQPRTLYV---GNLSRDVTEVLILQLFS-QIG-P-CKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMN--GRKILG 82 (103)
T ss_dssp CSCCCCEEEE---ESCCTTCCHHHHHHHHH-HHS-C-EEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHT--TEEETT
T ss_pred CCCCCCEEEE---eCCCccCCHHHHHHHHH-hcC-C-EeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhC--CCCcCC
Confidence 3567799999 8988 99999999998 599 4 56666554 55568899999999999888776322 236899
Q ss_pred ceeEEEecccCCCCCC
Q 045525 273 KDIRVRRFVPKPAPVA 288 (295)
Q Consensus 273 k~vWarky~pk~~~~~ 288 (295)
+.+-++...|++.+..
T Consensus 83 ~~l~V~~a~~~~~~~~ 98 (103)
T 2cqi_A 83 KEVKVNWATTPSSQKS 98 (103)
T ss_dssp EEEEEEECCCTTCCCC
T ss_pred CeEEEEECCCCccccc
Confidence 9999998887765543
No 27
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.74 E-value=7.9e-08 Score=77.54 Aligned_cols=89 Identities=22% Similarity=0.342 Sum_probs=70.8
Q ss_pred CCCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCCCCcccEE
Q 045525 195 NDADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGENELKQFD 269 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g~~~~kf~ 269 (295)
..+++.|++|| +|.| ++++||+++|.+ || . |+.|.+-. +++..+||+|.|.+.+....++..-+ ...
T Consensus 37 ~~~~~~~~l~V---~nLp~~~~~~~l~~~F~~-~G-~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--g~~ 108 (139)
T 1u6f_A 37 PEPDVLRNLMV---NYIPTTVDEVQLRQLFER-YG-P-IESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLN--GFN 108 (139)
T ss_dssp CCTTTTSEEEE---ESCSTTCCHHHHHHHHHH-HS-C-EEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTT--TEE
T ss_pred CCCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cC-C-eEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhC--CCE
Confidence 34667899999 8988 999999999995 99 4 56665543 67789999999999999888876422 246
Q ss_pred ECCceeEEEecccCCCCCCCCC
Q 045525 270 IHGKDIRVRRFVPKPAPVASPS 291 (295)
Q Consensus 270 Ingk~vWarky~pk~~~~~~~~ 291 (295)
|+|+.+-++...+++.++..++
T Consensus 109 ~~g~~l~v~~a~~~~~~~~~~~ 130 (139)
T 1u6f_A 109 ILNKRLKVALAASGHQRPGIAG 130 (139)
T ss_dssp CSSCEEEEEESSCCCCCCCSSC
T ss_pred ECCeEEEEEECCCCCCCCCCCC
Confidence 8999999999988877765443
No 28
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.73 E-value=7.7e-08 Score=73.89 Aligned_cols=86 Identities=21% Similarity=0.315 Sum_probs=68.9
Q ss_pred CCCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCCCCcccEE
Q 045525 195 NDADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGENELKQFD 269 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g~~~~kf~ 269 (295)
.-+...+++|| +|.| +++++|+++|.+ || . |+.|.+.. +++..+||+|.|.+++....++..-+. ..
T Consensus 10 ~~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G-~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~ 81 (105)
T 1x5u_A 10 SERNQDATVYV---GGLDEKVSEPLLWELFLQ-AG-P-VVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDM--IK 81 (105)
T ss_dssp CCCCTTTEEEE---ECCCTTCCHHHHHHHHHT-TS-C-EEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSS--CB
T ss_pred ccCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cC-C-eEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCC--Ce
Confidence 34567899999 8988 999999999995 99 4 55555544 678889999999999998888764222 35
Q ss_pred ECCceeEEEecccCCCCCC
Q 045525 270 IHGKDIRVRRFVPKPAPVA 288 (295)
Q Consensus 270 Ingk~vWarky~pk~~~~~ 288 (295)
|+|+.+-++...|++....
T Consensus 82 ~~g~~l~v~~a~~~~~~~~ 100 (105)
T 1x5u_A 82 LYGKPIRVNKASAHNKNLS 100 (105)
T ss_dssp CSSCBCEEEETTTTSCCCC
T ss_pred ECCeEEEEEECCCCCcCCC
Confidence 8999999999988876553
No 29
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.73 E-value=2e-08 Score=75.79 Aligned_cols=85 Identities=16% Similarity=0.140 Sum_probs=67.4
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCc
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGK 273 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk 273 (295)
.+++.+++|| +|.| ++++||+++|.+ || +.|+.+.+. ..+||+|.|.+++..+.++...+. +..++|+
T Consensus 4 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G-~vv~~~~~~----~~g~afV~f~~~~~A~~A~~~l~g-~~~~~g~ 73 (93)
T 2cqh_A 4 GSSGMNKLYI---GNLSPAVTADDLRQLFGD-RK-LPLAGQVLL----KSGYAFVDYPDQNWAIRAIETLSG-KVELHGK 73 (93)
T ss_dssp CCCCCCCEEE---ECCCTTCCHHHHHHHHHH-TT-CCCSSCEEE----ETTEEEECCSCHHHHHHHHHHHTT-TCEETTE
T ss_pred CCCCCcEEEE---eCCCCCCCHHHHHHHHHH-cC-CceEEEEEc----CCCEEEEEECCHHHHHHHHHHccC-CeeECCE
Confidence 3567899999 8888 999999999995 99 767777663 367999999999987777653222 3578999
Q ss_pred eeEEEecccCCCCCCCC
Q 045525 274 DIRVRRFVPKPAPVASP 290 (295)
Q Consensus 274 ~vWarky~pk~~~~~~~ 290 (295)
.+-++...|++.++..+
T Consensus 74 ~l~v~~a~~~~~~~~~~ 90 (93)
T 2cqh_A 74 IMEVDYSVSKKLRSSGP 90 (93)
T ss_dssp ECEEEECCCCCCCCCSC
T ss_pred EEEEEEccCccccCCCC
Confidence 99999999887776544
No 30
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.73 E-value=3.2e-08 Score=76.19 Aligned_cols=89 Identities=13% Similarity=0.121 Sum_probs=68.1
Q ss_pred CCCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhC---CCCcc
Q 045525 195 NDADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILG---ENELK 266 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~---g~~~~ 266 (295)
..+.+.+++|| +|.| ++++||+++|.+ || + |+.|.|-. +++..+||+|.|.+.+....++. |..
T Consensus 8 ~~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G-~-i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~-- 79 (106)
T 2dgp_A 8 MKDHDAIKLFI---GQIPRNLDEKDLKPLFEE-FG-K-IYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQK-- 79 (106)
T ss_dssp CCCTTCEEEEE---ESCCTTCCHHHHHHHHHH-HS-C-CCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTC--
T ss_pred CCCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cC-C-eeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCc--
Confidence 34667899999 8998 999999999995 99 5 55555544 68889999999999998777764 432
Q ss_pred cEEECCceeEEEecccCCCCCCCCC
Q 045525 267 QFDIHGKDIRVRRFVPKPAPVASPS 291 (295)
Q Consensus 267 kf~Ingk~vWarky~pk~~~~~~~~ 291 (295)
.+..+|+.+-++...|++.....|+
T Consensus 80 ~~~~~g~~l~v~~a~~~~~~~~~~~ 104 (106)
T 2dgp_A 80 TLPGMNRPIQVKPADSESRGGSGPS 104 (106)
T ss_dssp CCTTCSSCCEEEECCCCSCCCCCCC
T ss_pred ccCCCCceEEEEECCcccccCCCCC
Confidence 1112789999999988887665543
No 31
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.73 E-value=5.5e-08 Score=74.15 Aligned_cols=78 Identities=21% Similarity=0.294 Sum_probs=59.8
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCce
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGKD 274 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~ 274 (295)
+....|+|| +|.| +||++++++|. +|| -|+.+.| ..++++||+|.|.+++..+. |+|. .+.++|+.
T Consensus 8 ~~~~~~l~V---~~Lp~~~te~~L~~~F~-~~G--~i~~v~i--~~~srGfaFV~F~~~~~A~~-~~~~---~~~~~g~~ 75 (89)
T 3d2w_A 8 HHHGSKVFV---GRCTEDMTAEELQQFFC-QYG--EVVDVFI--PKPFRAFAFVTFADDKVAQS-LCGE---DLIIKGIS 75 (89)
T ss_dssp ---CCEEEE---ESCCTTCCHHHHHHHHT-TTS--CEEEEEC--CSSCCSEEEEEESCHHHHHH-HTTC---EEEETTEE
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHh-ccC--CEEEEEE--eeCCCCEEEEEECCHHHHHH-HcCC---CcccCCEE
Confidence 445679999 9999 99999999999 599 4666666 34588999999999999885 5664 78899999
Q ss_pred eEEEecccCCCC
Q 045525 275 IRVRRFVPKPAP 286 (295)
Q Consensus 275 vWarky~pk~~~ 286 (295)
+.+++..||+.+
T Consensus 76 v~v~~a~~k~~~ 87 (89)
T 3d2w_A 76 VHISNAEPKHNK 87 (89)
T ss_dssp EEEEECC-----
T ss_pred EEEEEcCCCCcC
Confidence 999999998654
No 32
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.72 E-value=3.1e-08 Score=76.06 Aligned_cols=89 Identities=19% Similarity=0.114 Sum_probs=70.3
Q ss_pred CCCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec-cCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 195 NDADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC-CRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~-~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
..+.+.+++|| +|.| ++++||+++|. +|| + |+.+.|.. +++...||+|.|.+.+....++..-+. ..|+
T Consensus 10 ~~~~~~~~l~V---~nlp~~~t~~~l~~~F~-~~G-~-i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g--~~~~ 81 (103)
T 2d9p_A 10 ITRYQVVNLYV---KNLDDGIDDERLRKAFS-PFG-T-ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG--RIVA 81 (103)
T ss_dssp CCCSSCCCEEE---ECCCTTCCHHHHHHTTT-TTS-C-EEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTT--CBSS
T ss_pred cCCCCCCEEEE---eCCCCCCCHHHHHHHHH-hcC-C-EEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCC--CEeC
Confidence 34668899999 8988 99999999999 599 4 66666655 678899999999999998877653111 2479
Q ss_pred CceeEEEecccCCCCCCCCC
Q 045525 272 GKDIRVRRFVPKPAPVASPS 291 (295)
Q Consensus 272 gk~vWarky~pk~~~~~~~~ 291 (295)
|+.+-++...|++.+...|+
T Consensus 82 g~~l~V~~a~~~~~~~~~~~ 101 (103)
T 2d9p_A 82 TKPLYVALAQRKEERQSGPS 101 (103)
T ss_dssp SSBCEEEECSSCCCCCCCCC
T ss_pred CcEEEEEEecccccCCCCCC
Confidence 99999999998887765543
No 33
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.71 E-value=5.9e-08 Score=74.62 Aligned_cols=87 Identities=10% Similarity=0.180 Sum_probs=68.4
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec----cCCCCceEEEEecCHHHHHHHhCCC-CcccE
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC----CRDQSLYARVIVRSPAYITLILGEN-ELKQF 268 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~----~~~qplfarivf~s~~~v~~vL~g~-~~~kf 268 (295)
...+.++||| +|.| ++++||+++|.+ || -|+.|.|.. +++..+||+|.|.+++..+.++..- + ..
T Consensus 11 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G--~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~--~~ 82 (107)
T 2cph_A 11 KKQTTSKILV---RNIPFQANQREIRELFST-FG--ELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCH--ST 82 (107)
T ss_dssp CSSCCCCEEE---ESCCTTCCHHHHHHHHHT-TS--CEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHT--CC
T ss_pred cCCCCCEEEE---eCCCCcCCHHHHHHHHHc-cC--CeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhcc--CC
Confidence 3567799999 8988 999999999995 99 466666632 6788999999999999988877531 1 23
Q ss_pred EECCceeEEEecccCCCCCCCC
Q 045525 269 DIHGKDIRVRRFVPKPAPVASP 290 (295)
Q Consensus 269 ~Ingk~vWarky~pk~~~~~~~ 290 (295)
.|+|+.+-++...|++.....|
T Consensus 83 ~~~g~~l~v~~a~~~~~~~~~~ 104 (107)
T 2cph_A 83 HLYGRRLVLEWADSEVTVQSGP 104 (107)
T ss_dssp BSSSCBCEEEECCCCCCCCCSC
T ss_pred eECCCEEEEEeCCCCCCCCCCC
Confidence 6889999999998887765444
No 34
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.71 E-value=3.8e-08 Score=76.76 Aligned_cols=87 Identities=17% Similarity=0.239 Sum_probs=67.2
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCce---------eEEEeec-cCCCCceEEEEecCHHHHHHHhCCCC
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCV---------EDIKMGC-CRDQSLYARVIVRSPAYITLILGENE 264 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cv---------e~v~M~~-~~~qplfarivf~s~~~v~~vL~g~~ 264 (295)
..+.+++|| +|.| ++++||+++|.+ || .+. .++.+.. +++..+||+|.|.+++....++..-+
T Consensus 12 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G-~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 86 (113)
T 2cpe_A 12 DSDNSAIYV---QGLNDSVTLDDLADFFKQ-CG-VVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFD 86 (113)
T ss_dssp CCCCCEEEE---ECCCTTCCHHHHHHHHTT-TS-CBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCEEEE---cCCCCCCCHHHHHHHHHh-cC-CEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcC
Confidence 457799999 8988 999999999995 99 554 2333332 78889999999999999888775311
Q ss_pred cccEEECCceeEEEecccCCCCCCCC
Q 045525 265 LKQFDIHGKDIRVRRFVPKPAPVASP 290 (295)
Q Consensus 265 ~~kf~Ingk~vWarky~pk~~~~~~~ 290 (295)
...|+|+.+-++...|++.....+
T Consensus 87 --g~~~~g~~l~V~~a~~~~~~~~~~ 110 (113)
T 2cpe_A 87 --GKDFQGSKLKVSLARKKPPMNSGP 110 (113)
T ss_dssp --TCEETTEECEEECSSCCCCSTTCC
T ss_pred --CCccCCCEEEEEECCCCCCCCCCC
Confidence 126899999999998887766544
No 35
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.70 E-value=7.4e-08 Score=74.11 Aligned_cols=87 Identities=10% Similarity=0.120 Sum_probs=69.6
Q ss_pred CCCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCCCCcccEE
Q 045525 195 NDADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGENELKQFD 269 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g~~~~kf~ 269 (295)
..++..+++|| +|.| ++++||+++|.+ || |+.|.|-. +++..+||+|.|.+++....+| . .....
T Consensus 10 ~~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~g---i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~--l~g~~ 79 (103)
T 2dng_A 10 LPTEPPYTAYV---GNLPFNTVQGDIDAIFKD-LS---IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-T--YDGAL 79 (103)
T ss_dssp CCSSSCEEEEE---ESCCTTCCHHHHHHHTTT-SC---EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-G--GTTCE
T ss_pred CCCCCCeEEEE---eCCCCCCCHHHHHHHHHh-CC---ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-h--hCCCe
Confidence 34567799999 8988 999999999995 76 55555543 6888999999999999999988 4 33467
Q ss_pred ECCceeEEEecccCCCCCCCCC
Q 045525 270 IHGKDIRVRRFVPKPAPVASPS 291 (295)
Q Consensus 270 Ingk~vWarky~pk~~~~~~~~ 291 (295)
|+|+.+-++...|++.....|+
T Consensus 80 ~~g~~l~V~~a~~~~~~~~~~~ 101 (103)
T 2dng_A 80 LGDRSLRVDIAEGRKQDKSGPS 101 (103)
T ss_dssp ETTEECEEEECCCCCCCCSSCC
T ss_pred ECCeEEEEEEecCCCCCCCCCC
Confidence 8999999999988877665443
No 36
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=8.3e-08 Score=72.80 Aligned_cols=83 Identities=24% Similarity=0.377 Sum_probs=65.3
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec-cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCc
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC-CRDQSLYARVIVRSPAYITLILGENELKQFDIHGK 273 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~-~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk 273 (295)
+...|++|| +|.| ++++||+++|. +|| + |+.|.+.. +++ ||+|.|.+++..+.++. .+ ...|+|+
T Consensus 5 ~~~~~~l~V---~nl~~~~t~~~l~~~F~-~~G-~-v~~v~~~~~~g~---~afV~f~~~~~a~~ai~-l~--g~~~~g~ 72 (94)
T 2e5g_A 5 SSGLRSVFV---SGFPRGVDSAQLSEYFL-AFG-P-VASVVMDKDKGV---FAIVEMGDVGAREAVLS-QS--QHSLGGH 72 (94)
T ss_dssp CTTCCEEEE---ECCCTTCCHHHHHHHGG-GTS-C-EEEEEECSSSCC---EEEEEESSHHHHHHHHT-CS--CCEETTE
T ss_pred cCCCCEEEE---ECCCCCCCHHHHHHHHH-hcC-C-eEEEEEcCCCCc---EEEEEECCHHHHHHHHh-cC--CeEECCE
Confidence 456789999 8988 99999999999 599 4 55674433 444 99999999999888888 43 3478999
Q ss_pred eeEEEecccCCCCCCCCC
Q 045525 274 DIRVRRFVPKPAPVASPS 291 (295)
Q Consensus 274 ~vWarky~pk~~~~~~~~ 291 (295)
.+.++...+|+.++..++
T Consensus 73 ~l~V~~a~~~~~~~~~~~ 90 (94)
T 2e5g_A 73 RLRVRPREQKEFQSPASK 90 (94)
T ss_dssp ECCCBCSCCSCCCCCCCC
T ss_pred EEEEEECCcCCCCCCCCC
Confidence 999998887776665443
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.69 E-value=9.3e-08 Score=78.53 Aligned_cols=87 Identities=17% Similarity=0.181 Sum_probs=69.5
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCCCCcccEEE
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGENELKQFDI 270 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g~~~~kf~I 270 (295)
.....+++|| +|.| ++++||+++|. .|| . |+.+.+.. ++++.+||+|.|.+.+.....|..-+. ..|
T Consensus 66 ~~~~~~~l~v---~nl~~~~~~~~l~~~F~-~~G-~-v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~ 137 (158)
T 2kn4_A 66 DVEGMTSLKV---DNLTYRTSPDTLRRVFE-KYG-R-VGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG--AVL 137 (158)
T ss_dssp CCCBCCEEEE---ESCCTTCCHHHHHHHHH-HHS-C-EEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTT--EES
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHH-hcC-C-eEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC--CEE
Confidence 3456789999 8888 99999999997 599 4 55555543 788999999999999998888864222 368
Q ss_pred CCceeEEEecccCCCCCCCC
Q 045525 271 HGKDIRVRRFVPKPAPVASP 290 (295)
Q Consensus 271 ngk~vWarky~pk~~~~~~~ 290 (295)
+|+.+.++...|+++++..+
T Consensus 138 ~g~~l~v~~a~~~~~~~~~~ 157 (158)
T 2kn4_A 138 DGRELRVQMARYGRPPDSHH 157 (158)
T ss_dssp SSSEEEEEEECCSSCCCCCC
T ss_pred CCeEEEEEECCCCCCCCCCC
Confidence 99999999999887776543
No 38
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.68 E-value=6.8e-08 Score=75.38 Aligned_cols=89 Identities=15% Similarity=0.156 Sum_probs=68.4
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhC--CCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYG--EDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG--~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
.++..+++|| +|.| ++++||+++|.+ || ++|+..+.+. +++..+||+|.|.+.+....++..-+. ..|+
T Consensus 21 ~~~~~~~l~V---~nLp~~~t~~~l~~~f~~-~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g--~~~~ 93 (115)
T 2cpx_A 21 PGEPNKVLYL---KNLSPRVTERDLVSLFAR-FQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNG--YKLY 93 (115)
T ss_dssp CCSCCSEEEE---ECCCTTCCHHHHHHHTHH-HHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTT--CBCS
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHH-hCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCC--CEeC
Confidence 3456799999 8988 999999999995 99 2222333333 688899999999999998887754222 2469
Q ss_pred CceeEEEecccCCCCCCCCC
Q 045525 272 GKDIRVRRFVPKPAPVASPS 291 (295)
Q Consensus 272 gk~vWarky~pk~~~~~~~~ 291 (295)
|+.+.++...|++.+...|+
T Consensus 94 g~~l~v~~a~~~~~~~~~~~ 113 (115)
T 2cpx_A 94 GKILVIEFGKNKKQRSSGPS 113 (115)
T ss_dssp SCBCEEEECCCCSCCCCCCC
T ss_pred CcEEEEEEccCCCCCCCCCC
Confidence 99999999999887776544
No 39
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=5.9e-08 Score=74.11 Aligned_cols=82 Identities=20% Similarity=0.217 Sum_probs=66.0
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEECC
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIHG 272 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ing 272 (295)
+.+.+++|| +|.| ++++||+++|.+ || . |+.+.+.. +++..+||+|.|.+++....++..-+ ...++|
T Consensus 14 ~~~~~~l~v---~nlp~~~t~~~l~~~F~~-~G-~-i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~--g~~~~g 85 (100)
T 2do4_A 14 SLEKHKLFI---SGLPFSCTKEELEEICKA-HG-T-VKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMD--GMTIKE 85 (100)
T ss_dssp CCCCSCEEE---ESCCTTCCHHHHHHHHTT-TS-C-EEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT--TEESSS
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-CC-C-eEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhC--CCEECC
Confidence 567799999 8998 999999999995 99 4 55565544 67888999999999999888775311 247899
Q ss_pred ceeEEEecccCCCC
Q 045525 273 KDIRVRRFVPKPAP 286 (295)
Q Consensus 273 k~vWarky~pk~~~ 286 (295)
+.+-++...|++.+
T Consensus 86 ~~l~v~~a~~~~~~ 99 (100)
T 2do4_A 86 NIIKVAISNSGPSS 99 (100)
T ss_dssp CEEEEEECCCCSCC
T ss_pred EEEEEEECCCCCCC
Confidence 99999998887653
No 40
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.67 E-value=6.8e-08 Score=71.76 Aligned_cols=78 Identities=14% Similarity=0.163 Sum_probs=62.5
Q ss_pred CCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEee-c--cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCc
Q 045525 199 TDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMG-C--CRDQSLYARVIVRSPAYITLILGENELKQFDIHGK 273 (295)
Q Consensus 199 d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~-~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk 273 (295)
+.||+|| +|.| ++++||+++|. +|| . |+.+.+. + ++++.+||+|.|.+++....++ ..+ ...++|+
T Consensus 5 ~~~~l~V---~nlp~~~t~~~l~~~F~-~~G-~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~--g~~~~g~ 75 (89)
T 3ucg_A 5 DARSIYV---GNVDYGATAEELEAHFH-GCG-S-VNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALD--ESLFRGR 75 (89)
T ss_dssp HHTEEEE---ESCCTTCCHHHHHHHHG-GGC-C-EEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGT--TCEETTE
T ss_pred cCCEEEE---eCCCCCCCHHHHHHHHH-hCC-C-EEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcC--CCEECCc
Confidence 5689999 8998 99999999999 599 4 5555554 3 7888999999999999988888 322 2358999
Q ss_pred eeEEEecccCCC
Q 045525 274 DIRVRRFVPKPA 285 (295)
Q Consensus 274 ~vWarky~pk~~ 285 (295)
.+-++...|+.+
T Consensus 76 ~l~V~~a~~~~p 87 (89)
T 3ucg_A 76 QIKVIPKRTNRP 87 (89)
T ss_dssp ECEEEETTTTSC
T ss_pred EEEEEEccCCCC
Confidence 999988766543
No 41
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.67 E-value=4.7e-08 Score=72.38 Aligned_cols=79 Identities=15% Similarity=0.115 Sum_probs=60.3
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
..+.+++|| +|.| ++++||+++|. +|| . |+++.+-. +++..+||+|.|.+.+....++..-+. ..++
T Consensus 3 ~~~~~~l~v---~nlp~~~t~~~l~~~F~-~~G-~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~ 74 (87)
T 3bs9_A 3 LGSHFHVFV---GDLSPEITTAAIAAAFA-PFG-R-ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG--QWLG 74 (87)
T ss_dssp ---CEEEEE---ESCCTTCCHHHHHHHHG-GGS-C-EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT--CEET
T ss_pred CCCceEEEE---eCCCCCCCHHHHHHHHH-hcC-C-EeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC--CEEC
Confidence 356789999 8888 99999999999 599 5 55555543 678889999999999998887763221 3689
Q ss_pred CceeEEEecccC
Q 045525 272 GKDIRVRRFVPK 283 (295)
Q Consensus 272 gk~vWarky~pk 283 (295)
|+.+-++...||
T Consensus 75 g~~l~v~~a~~k 86 (87)
T 3bs9_A 75 GRQIRTNWATRK 86 (87)
T ss_dssp TEECEEEEEC--
T ss_pred CeEEEEEecCCC
Confidence 999998888776
No 42
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.67 E-value=1.6e-07 Score=71.61 Aligned_cols=86 Identities=17% Similarity=0.188 Sum_probs=68.8
Q ss_pred CCCCCCceEEEEccCCcccCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCce
Q 045525 195 NDADTDRTLFATFSKGHPISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGKD 274 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~Pvse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~ 274 (295)
..+.+.+++|| +|+.++++||+++|. +|| -|+.+.| ++..+||+|.|.+.+..+..+..-+. ..|+|+.
T Consensus 10 ~~~~~~~~l~V---~n~~~t~~~l~~~F~-~~G--~i~~v~i---~~~~g~afV~f~~~~~a~~Ai~~l~g--~~~~g~~ 78 (97)
T 1x5p_A 10 RAPRKGNTLYV---YGEDMTPTLLRGAFS-PFG--NIIDLSM---DPPRNCAFVTYEKMESADQAVAELNG--TQVESVQ 78 (97)
T ss_dssp CCCCCCSEEEE---ECSSCCHHHHHHHHT-TTS--CEEEEEE---ETTTTEEEEEESSHHHHHHHHHHTTT--EEETTEE
T ss_pred CCCCCCCEEEE---cCCCCCHHHHHHHHh-hCC--CEEEEEe---cCCCCEEEEEECCHHHHHHHHHHhCC--CeECCeE
Confidence 34567799999 678999999999999 599 5777887 46778999999999998888854222 3679999
Q ss_pred eEEEecccCCCCCCCCC
Q 045525 275 IRVRRFVPKPAPVASPS 291 (295)
Q Consensus 275 vWarky~pk~~~~~~~~ 291 (295)
+-++...|++.....|+
T Consensus 79 l~v~~a~~~~~~~~~~~ 95 (97)
T 1x5p_A 79 LKVNIARKQPMLDSGPS 95 (97)
T ss_dssp EEEECCSSCCCCCSSCS
T ss_pred EEEEECCCCCCCCCCCC
Confidence 99998888877665543
No 43
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.66 E-value=9.7e-08 Score=71.74 Aligned_cols=83 Identities=20% Similarity=0.297 Sum_probs=66.5
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCc
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGK 273 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk 273 (295)
.+++.+++|| +|.| ++++||+++|. +|| -|+.+.|. ..||+|.|.+.+..+.++..-+ ...++|+
T Consensus 4 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~-~~G--~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~--g~~~~g~ 70 (90)
T 2dnq_A 4 GSSGMVKLFI---GNLPREATEQEIRSLFE-QYG--KVLECDII-----KNYGFVHIEDKTAAEDAIRNLH--HYKLHGV 70 (90)
T ss_dssp CSSCCEEEEE---ESCCSSCCHHHHHHHHH-TSS--CEEEEEEE-----TTEEEEEESSHHHHHHHHHHHT--TCBCSSC
T ss_pred CCCCCeEEEE---eCCCCCCCHHHHHHHHH-hCC--CEEEEEEE-----CCEEEEEECCHHHHHHHHHHhc--CCccCCc
Confidence 3677899999 8988 99999999999 499 46777774 5799999999999887765311 1358999
Q ss_pred eeEEEecccCCCCCCCCC
Q 045525 274 DIRVRRFVPKPAPVASPS 291 (295)
Q Consensus 274 ~vWarky~pk~~~~~~~~ 291 (295)
.+-++...|+++.+..|+
T Consensus 71 ~l~v~~a~~~~~~~~~~~ 88 (90)
T 2dnq_A 71 NINVEASKNKSKASSGPS 88 (90)
T ss_dssp BCEEECSSCCCCCCSSCC
T ss_pred EEEEEECCCCCCCCCCCC
Confidence 999999998887765543
No 44
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=3.8e-08 Score=77.67 Aligned_cols=85 Identities=19% Similarity=0.275 Sum_probs=65.6
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--c---CCCCceEEEEecCHHHHHHHhCCC---Ccc
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--C---RDQSLYARVIVRSPAYITLILGEN---ELK 266 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~---~~qplfarivf~s~~~v~~vL~g~---~~~ 266 (295)
..+.|++|| +|.| ++++||+++|. +|| .+. ...+.+ + ++..+||+|.|.+++..+.++... +..
T Consensus 5 ~~~~~~lfV---gnLp~~~te~~L~~~F~-~~G-~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~ 78 (114)
T 2dnl_A 5 SSGSRKVFV---GGLPPDIDEDEITASFR-RFG-PLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGK 78 (114)
T ss_dssp SSCCCCEEE---ECCCTTCCHHHHHHHTT-TTC-CCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTE
T ss_pred CCCCCEEEE---cCCCCCCCHHHHHHHHH-hcC-CEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCc
Confidence 457799999 8988 99999999999 599 665 444444 3 688999999999999988877422 222
Q ss_pred cE------EECCceeEEEecccCCCCC
Q 045525 267 QF------DIHGKDIRVRRFVPKPAPV 287 (295)
Q Consensus 267 kf------~Ingk~vWarky~pk~~~~ 287 (295)
.+ .+.+|.+++|.+.+.+..-
T Consensus 79 ~~~~~~~~~~~~~~~~v~p~~~~d~~~ 105 (114)
T 2dnl_A 79 LYLCVSSPTIKDKPVQIRPWNLSDSDF 105 (114)
T ss_dssp EEEEECCSSSCSEEEEEECCCCCCCCC
T ss_pred EEEeccCCCcCCCeeeccCCcccCCce
Confidence 33 4678889999988877653
No 45
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.66 E-value=1.4e-07 Score=75.13 Aligned_cols=83 Identities=19% Similarity=0.198 Sum_probs=65.6
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEECC
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIHG 272 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ing 272 (295)
+++.+++|| +|.| ++++||+++|. +|| . |+.|.+-. +++..+||+|.|.+.+..+.++..-+. ..|+|
T Consensus 4 ~~~~~~l~V---~nLp~~~t~~~l~~~F~-~~G-~-i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g--~~~~g 75 (116)
T 2fy1_A 4 ADHPGKLFI---GGLNRETNEKMLKAVFG-KHG-P-ISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNG--KSLHG 75 (116)
T ss_dssp TCSCCEEEE---ECCTTTCCHHHHHHHHH-TSS-C-CSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSS--CBCSS
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHH-hcC-C-EEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCC--CEECC
Confidence 456799999 8998 99999999999 599 5 55565554 788899999999999998887753222 24799
Q ss_pred ceeEEEecccCCCCC
Q 045525 273 KDIRVRRFVPKPAPV 287 (295)
Q Consensus 273 k~vWarky~pk~~~~ 287 (295)
+.+-++...|+....
T Consensus 76 ~~l~V~~a~~~~~~~ 90 (116)
T 2fy1_A 76 KAIKVEQAKKPSFQS 90 (116)
T ss_dssp SBCEEEECCCSSCSS
T ss_pred EEEEEEECCCCCCCC
Confidence 999888887766543
No 46
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.65 E-value=1.3e-07 Score=70.94 Aligned_cols=80 Identities=19% Similarity=0.184 Sum_probs=63.7
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCc
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGK 273 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk 273 (295)
-+.+.+++|| +|.| ++++||+++|.+ || + |+.+.|-+ .||+|.|.+++..+.++...+ ...++|+
T Consensus 5 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G-~-v~~~~~~~-----~~afV~f~~~~~a~~A~~~l~--g~~~~g~ 71 (90)
T 2dnp_A 5 SSGNTWKIFV---GNVSAACTSQELRSLFER-RG-R-VIECDVVK-----DYAFVHMEKEADAKAAIAQLN--GKEVKGK 71 (90)
T ss_dssp SSCCSCCEEE---ESCCTTCCHHHHHHHHHH-HS-C-EEEEEECS-----SCEEEEESCHHHHHHHHHHHT--TCEETTE
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHc-CC-C-EEEEEEEC-----CEEEEEECCHHHHHHHHHHhC--CCEECCc
Confidence 3667899999 8888 999999999995 99 4 77777743 399999999999887765311 1368999
Q ss_pred eeEEEecccCCCCCC
Q 045525 274 DIRVRRFVPKPAPVA 288 (295)
Q Consensus 274 ~vWarky~pk~~~~~ 288 (295)
.+-++...|+++++.
T Consensus 72 ~l~v~~a~~~~~~~~ 86 (90)
T 2dnp_A 72 RINVELSTKGQKKSG 86 (90)
T ss_dssp ECEEEESCCCCCCCS
T ss_pred EEEEEECCCCCCCCC
Confidence 999999988865553
No 47
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.65 E-value=5.6e-08 Score=74.83 Aligned_cols=82 Identities=17% Similarity=0.216 Sum_probs=64.7
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEe-ec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKM-GC--CRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M-~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
..+.+++|| +|.| ++++||+++|. +|| . |+.+.+ .+ +++..+||+|.|.+++..+.++..-+. ..|+
T Consensus 20 ~~~~~~l~V---~nlp~~~t~~~l~~~f~-~~G-~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~ 91 (106)
T 1p27_B 20 SVEGWILFV---TGVHEEATEEDIHDKFA-EYG-E-IKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNG--QDLM 91 (106)
T ss_dssp BTTBEEEEE---ECCCTTCCHHHHHHHHG-GGS-C-EEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTT--CBSS
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHh-ccC-C-eEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcC--CEEC
Confidence 456789999 8999 99999999998 599 4 555555 33 688899999999999998877653111 2688
Q ss_pred CceeEEEecccCCCC
Q 045525 272 GKDIRVRRFVPKPAP 286 (295)
Q Consensus 272 gk~vWarky~pk~~~ 286 (295)
|+.+-++...||+++
T Consensus 92 g~~l~V~~a~~~~~~ 106 (106)
T 1p27_B 92 GQPISVDWCFVRGPP 106 (106)
T ss_dssp SSBCEEEESEESSCC
T ss_pred CcEEEEEeecCCCCC
Confidence 999999998888653
No 48
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.64 E-value=6.9e-08 Score=72.34 Aligned_cols=83 Identities=17% Similarity=0.155 Sum_probs=64.6
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec-cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCc
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC-CRDQSLYARVIVRSPAYITLILGENELKQFDIHGK 273 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~-~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk 273 (295)
+.+.+++|| +|.| ++++||+++|.+ || + |+.+.+.. +++..+||+|.|.+.+..+.++..-+. ..++|+
T Consensus 5 ~~~~~~l~V---~nlp~~~t~~~l~~~f~~-~G-~-v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g--~~~~g~ 76 (92)
T 2dgv_A 5 SSGACQIFV---RNLPFDFTWKMLKDKFNE-CG-H-VLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG--MKLSGR 76 (92)
T ss_dssp SSSCCEEEE---CSCCTTCCHHHHHHHHHT-TS-C-EEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTT--CCBTTB
T ss_pred CCCCcEEEE---eCCCCCCCHHHHHHHHHh-cC-C-EEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCC--CEECCc
Confidence 567799999 8999 999999999995 99 4 55555544 788899999999999998877652111 248999
Q ss_pred eeEEEecccCCCCC
Q 045525 274 DIRVRRFVPKPAPV 287 (295)
Q Consensus 274 ~vWarky~pk~~~~ 287 (295)
.+-++...|++.++
T Consensus 77 ~l~v~~a~~~~~~~ 90 (92)
T 2dgv_A 77 EIDVRIDRNASGPS 90 (92)
T ss_dssp CCCCEECSCCSSCC
T ss_pred EEEEEEcCCCCCCC
Confidence 99888877765543
No 49
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.63 E-value=5.3e-08 Score=74.51 Aligned_cols=83 Identities=14% Similarity=0.082 Sum_probs=66.6
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
.+.+.+++|| +|.| +|++||+++|.+ || .+.. ..|.+ ++++.+||+|.|.+.+..+..|. . ....|+
T Consensus 13 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G-~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l--~g~~~~ 83 (101)
T 1fj7_A 13 ESTTPFNLFI---GNLNPNKSVAELKVAISE-LF-AKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-L--TGLKVF 83 (101)
T ss_dssp TCSCSEEEEE---ECCCTTSCHHHHHHHHHH-HH-HHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-G--GGCCBT
T ss_pred cCCCCCEEEE---eCCCCCCCHHHHHHHHHH-hC-Ccce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-c--CCcEEC
Confidence 4557899999 8988 999999999995 99 5555 44444 78999999999999998887775 2 234678
Q ss_pred CceeEEEecccCCCCC
Q 045525 272 GKDIRVRRFVPKPAPV 287 (295)
Q Consensus 272 gk~vWarky~pk~~~~ 287 (295)
|+.+-++...||+..+
T Consensus 84 g~~l~V~~a~~~~~~~ 99 (101)
T 1fj7_A 84 GNEIKLEKPKGRDGTR 99 (101)
T ss_dssp TBCCEEECCSCCCCSS
T ss_pred CcEEEEEEcCCCCCCC
Confidence 9999999988876553
No 50
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=7e-08 Score=74.01 Aligned_cols=84 Identities=21% Similarity=0.275 Sum_probs=65.2
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEe-ec-cCCCCceEEEEecCHHHHHHHhCCCCcccEE-EC
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKM-GC-CRDQSLYARVIVRSPAYITLILGENELKQFD-IH 271 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M-~~-~~~qplfarivf~s~~~v~~vL~g~~~~kf~-In 271 (295)
+...+++|| +|.| ++++||+++|.+.|| .+ +.+.+ .+ +++..+||+|.|.+.+....++...+. .. |+
T Consensus 6 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~~~G-~v-~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~~ 78 (104)
T 2dhg_A 6 SGPEYSLFV---GDLTPDVDDGMLYEFFVKVYP-SC-RGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQG--AVGLG 78 (104)
T ss_dssp SSCCCCEEE---ECCCTTCCHHHHHHHHHHHCT-TE-EEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTT--CCSSS
T ss_pred CCCCcEEEE---eCCCCCCCHHHHHHHHHHhCC-Ce-EEEEEEECCCCCccceEEEEECCHHHHHHHHHHccC--CcccC
Confidence 456789999 8988 999999999996699 54 55554 44 788899999999999998888763221 23 89
Q ss_pred CceeEEEecccCCCCC
Q 045525 272 GKDIRVRRFVPKPAPV 287 (295)
Q Consensus 272 gk~vWarky~pk~~~~ 287 (295)
|+.+-++...|++.+.
T Consensus 79 g~~l~v~~a~~~~~~~ 94 (104)
T 2dhg_A 79 SKPVRLSVAIPKASRV 94 (104)
T ss_dssp SSCCCCCBCCCCCSCC
T ss_pred CEeEEEEEccCCCcCC
Confidence 9999888877766554
No 51
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.62 E-value=7.9e-08 Score=73.83 Aligned_cols=83 Identities=14% Similarity=0.103 Sum_probs=66.4
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhC---CCCcccEE
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILG---ENELKQFD 269 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~---g~~~~kf~ 269 (295)
+++.++||| +|.| ++++||+++|. +|| . |+.+.|.. .++..+||+|.|.+.+....++. |. .
T Consensus 12 ~~~~~~l~v---~nLp~~~t~~~l~~~F~-~~G-~-i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-----~ 80 (105)
T 2dnh_A 12 GGRDRKLFV---GMLNKQQSEEDVLRLFQ-PFG-V-IDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGS-----Q 80 (105)
T ss_dssp CCCCCEEEE---ESCCTTCCHHHHHHHHT-TTS-C-EEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSC-----C
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHH-hcC-C-eEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCC-----c
Confidence 456799999 8888 99999999999 599 4 66666655 67778999999999999877764 53 3
Q ss_pred ECC---ceeEEEecccCCCCCCCC
Q 045525 270 IHG---KDIRVRRFVPKPAPVASP 290 (295)
Q Consensus 270 Ing---k~vWarky~pk~~~~~~~ 290 (295)
++| +.+-++...|++.+...|
T Consensus 81 ~~gg~~~~l~V~~a~~~~~~~~~~ 104 (105)
T 2dnh_A 81 TMPGASSSLVVKFADTDKESGPSS 104 (105)
T ss_dssp CCTTCSSCCEEEESCSSCCCSCSC
T ss_pred cCCCCCccEEEEECccCcccCCCC
Confidence 666 999999888887766443
No 52
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.62 E-value=6.5e-08 Score=76.58 Aligned_cols=82 Identities=15% Similarity=0.199 Sum_probs=61.8
Q ss_pred CCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEee-ccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCce
Q 045525 198 DTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMG-CCRDQSLYARVIVRSPAYITLILGENELKQFDIHGKD 274 (295)
Q Consensus 198 ~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~-~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~ 274 (295)
....+||| +|.| ++++||+++|. +|| . |+.+.+- +.+.+.+||+|.|.+++..+..+...+ ...|+|+.
T Consensus 3 ~~~~~lfV---~nLp~~~te~~L~~~F~-~~G-~-v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~--~~~~~g~~ 74 (115)
T 4f25_A 3 LGSGNIFI---KNLDKSIDNKALYDTFS-AFG-N-ILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN--GMLLNDRK 74 (115)
T ss_dssp --CCEEEE---ESCCTTCCHHHHHHHHG-GGS-C-EEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHT--TCEETTEE
T ss_pred CCCCEEEE---CCCCCCCCHHHHHHHHh-ccC-C-EEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcC--CCEECCEE
Confidence 34568999 9999 99999999998 599 4 5555544 356678999999999999887765311 13789999
Q ss_pred eEEEecccCCCCC
Q 045525 275 IRVRRFVPKPAPV 287 (295)
Q Consensus 275 vWarky~pk~~~~ 287 (295)
+-+..+.||+.+.
T Consensus 75 i~V~~a~~~~~~~ 87 (115)
T 4f25_A 75 VFVGRFKSRKERE 87 (115)
T ss_dssp CEEEESSCCCC--
T ss_pred EEEEECCCccccc
Confidence 9999998876543
No 53
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.61 E-value=5.7e-08 Score=74.46 Aligned_cols=81 Identities=23% Similarity=0.364 Sum_probs=64.9
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEECC
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIHG 272 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ing 272 (295)
..+.+++|| +|.| ++++||+++|. .|| + |+.+.|-. +++..+||+|.|.+.+..+.++. ....++|
T Consensus 6 ~~~~~~l~V---~nLp~~~t~~~l~~~F~-~~G-~-i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~----~~~~~~g 75 (102)
T 2xs2_A 6 KIMPNTVFV---GGIDVRMDETEIRSFFA-RYG-S-VKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE----SQINFHG 75 (102)
T ss_dssp EEEEEEEEE---ECCCTTCCHHHHHHHHG-GGS-C-EEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT----CCCEETT
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHH-hCC-C-eEEEEEEECCCCCccceEEEEECCHHHHHHHHh----CCCeECC
Confidence 345689999 8988 99999999998 599 5 45555544 77889999999999999999998 2358999
Q ss_pred ceeEEEecccCCCCC
Q 045525 273 KDIRVRRFVPKPAPV 287 (295)
Q Consensus 273 k~vWarky~pk~~~~ 287 (295)
+.+.+.+..||....
T Consensus 76 ~~l~v~~a~~~~~~~ 90 (102)
T 2xs2_A 76 KKLKLGPAIRKQNLS 90 (102)
T ss_dssp EECEEEEEEECC---
T ss_pred EEEEEEECCcCcchh
Confidence 999999998876553
No 54
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.61 E-value=2.1e-07 Score=70.69 Aligned_cols=82 Identities=12% Similarity=0.062 Sum_probs=62.9
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEe-ec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEE
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKM-GC--CRDQSLYARVIVRSPAYITLILGENELKQFDI 270 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M-~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~I 270 (295)
.+...+++|| +|.| ++++||+++|.+ || +++..+.+ .+ ++++.+||+|.|.+++..+.++..-+. ..+
T Consensus 5 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G-~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~ 77 (99)
T 2div_A 5 SSGMAASLWM---GDLEPYMDENFISRAFAT-MG-ETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKING--KPL 77 (99)
T ss_dssp CCSSSSEEEE---CSCCTTCCHHHHHHHHHH-TT-CCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTT--SEE
T ss_pred CCCCccEEEE---eCCCCCCCHHHHHHHHHH-hC-CcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcC--Ccc
Confidence 4567799999 9998 999999999995 99 65524444 33 688899999999999998888875332 468
Q ss_pred CCce----eEEEecccCC
Q 045525 271 HGKD----IRVRRFVPKP 284 (295)
Q Consensus 271 ngk~----vWarky~pk~ 284 (295)
+|+. +-+....|.+
T Consensus 78 ~g~~~~~~l~v~~a~~~~ 95 (99)
T 2div_A 78 PGATPAKRFKLNYATYSG 95 (99)
T ss_dssp SSCSSCEECCEEETTCCS
T ss_pred CCCCcceeEEEeecCCCC
Confidence 9999 6666555543
No 55
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.60 E-value=1.6e-07 Score=69.82 Aligned_cols=75 Identities=17% Similarity=0.419 Sum_probs=61.0
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEe-ec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEE
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKM-GC--CRDQSLYARVIVRSPAYITLILGENELKQFDI 270 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M-~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~I 270 (295)
.+++.+++|| +|.| +++++|+++|. +|| . |+.+.+ .+ +++..+||+|.|.+++..+.++.... ..+
T Consensus 7 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~-~~G-~-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~---~~~ 77 (87)
T 3s7r_A 7 NEEDAGKMFV---GGLSWDTSKKDLKDYFT-KFG-E-VVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKE---HRL 77 (87)
T ss_dssp CCSCTTEEEE---ECCCTTCCHHHHHHHHT-TTS-C-EEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSC---EEE
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHH-hCC-C-EEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCC---CEE
Confidence 3567899999 8988 99999999997 599 4 455554 43 68889999999999999999997533 359
Q ss_pred CCceeEEEe
Q 045525 271 HGKDIRVRR 279 (295)
Q Consensus 271 ngk~vWark 279 (295)
+|+.+-+++
T Consensus 78 ~g~~i~v~~ 86 (87)
T 3s7r_A 78 DGRVIDPKK 86 (87)
T ss_dssp TTEEEEEEE
T ss_pred CCEEEEEEe
Confidence 999998775
No 56
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.60 E-value=1.5e-07 Score=73.07 Aligned_cols=83 Identities=19% Similarity=0.151 Sum_probs=66.0
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCCCCcccEEE
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGENELKQFDI 270 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g~~~~kf~I 270 (295)
...+.+++|| +|.| ++++||+++|. +|| -|+.+.|-. +++..+||+|.|.+.+....++..-+. ..|
T Consensus 22 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~-~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g--~~~ 93 (110)
T 1oo0_B 22 RSVEGWILFV---TSIHEEAQEDEIQEKFC-DYG--EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG--AEI 93 (110)
T ss_dssp CBTTBEEEEE---ESCCTTCCHHHHHHHHG-GGS--CEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTT--CEE
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHH-hcC--CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCC--CEE
Confidence 3567799999 8998 99999999998 599 466666643 678899999999999998877653111 268
Q ss_pred CCceeEEEecccCCCC
Q 045525 271 HGKDIRVRRFVPKPAP 286 (295)
Q Consensus 271 ngk~vWarky~pk~~~ 286 (295)
+|+.+-++...|++++
T Consensus 94 ~g~~l~V~~a~~~~~~ 109 (110)
T 1oo0_B 94 MGQTIQVDWCFVKGPK 109 (110)
T ss_dssp TTEECEEEESEESSCC
T ss_pred CCcEEEEEEcccCCCC
Confidence 9999999888887654
No 57
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.60 E-value=1.1e-07 Score=70.26 Aligned_cols=80 Identities=18% Similarity=0.214 Sum_probs=62.0
Q ss_pred CCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---c-CCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 198 DTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---C-RDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 198 ~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~-~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
...+++|| +|.| ++++||+++|.+ || -|+.+.+.. + ++..+||+|.|.+++....++..-+ ...++
T Consensus 2 ~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G--~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--g~~~~ 73 (88)
T 4a8x_A 2 MKPTKVHI---GRLTRNVTKDHIMEIFST-YG--KIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMD--GGQID 73 (88)
T ss_dssp CCCCEEEE---ECCCTTCCHHHHHHHHHT-TS--CEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHT--TCEET
T ss_pred CCCCEEEE---eCCCCCCCHHHHHHHHHh-CC--CEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcC--CCeEC
Confidence 35689999 8988 999999999984 99 455565544 2 3388999999999999887765311 13689
Q ss_pred CceeEEEecccCCC
Q 045525 272 GKDIRVRRFVPKPA 285 (295)
Q Consensus 272 gk~vWarky~pk~~ 285 (295)
|+.+-+..+.|+++
T Consensus 74 g~~l~v~~a~~~~~ 87 (88)
T 4a8x_A 74 GQEITATAVLAPWP 87 (88)
T ss_dssp TEECEEEEECCCCC
T ss_pred CeEEEEEECCCCCC
Confidence 99999999887765
No 58
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.59 E-value=3.8e-08 Score=73.66 Aligned_cols=81 Identities=17% Similarity=0.305 Sum_probs=56.8
Q ss_pred ceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCcee
Q 045525 201 RTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGENELKQFDIHGKDI 275 (295)
Q Consensus 201 Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~v 275 (295)
|++|| +|.| ++++||+++|.+ || . |+.+.+.. ++++.+||+|.|.+.+ ....+..-+.. .++|+.+
T Consensus 2 ~~l~V---~nLp~~~t~~~l~~~F~~-~G-~-i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~--~~~g~~l 72 (90)
T 2ki2_A 2 RNIYV---GNLVYSATSEQVKELFSQ-FG-K-VFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNT--DFMGRTI 72 (90)
T ss_dssp EEEEE---EEECTTSSHHHHTTTHHH-HT-C-CSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSS--CCSSSSC
T ss_pred cEEEE---CCCCCCCCHHHHHHHHHh-cC-C-EEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCC--EECCeEE
Confidence 78888 8888 999999999995 99 4 55555543 6888999999999999 77666543322 4899999
Q ss_pred EEEecccCCCCCCCC
Q 045525 276 RVRRFVPKPAPVASP 290 (295)
Q Consensus 276 Warky~pk~~~~~~~ 290 (295)
-++...|+..++..+
T Consensus 73 ~V~~a~~~~~~~~~~ 87 (90)
T 2ki2_A 73 RVTEANPKKSLEHHH 87 (90)
T ss_dssp SEEEC----------
T ss_pred EEEEcCCCCCCCCCC
Confidence 999988887666543
No 59
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.59 E-value=1.1e-07 Score=74.81 Aligned_cols=74 Identities=16% Similarity=0.185 Sum_probs=60.0
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEECC
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIHG 272 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ing 272 (295)
..+.||+|| +|.| +|+++|+++|.+ || + |++|.|-. .+++.+||+|.|.+++..+.+|. .+ ...++|
T Consensus 8 ~~~~~~lfV---~~Lp~~~te~~L~~~F~~-~G-~-v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~--~~~~~g 78 (103)
T 1s79_A 8 DVKNRSVYI---KGFPTDATLDDIKEWLED-KG-Q-VLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TP--GQKYKE 78 (103)
T ss_dssp CSGGGCEEE---ECCCTTCCHHHHHHHHHT-SS-C-EEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SS--CCCCTT
T ss_pred cCCCCEEEE---ECCCCCCCHHHHHHHHhh-cC-C-EEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cC--CCEECC
Confidence 456799999 9999 999999999995 99 5 55565544 68889999999999999999998 32 246899
Q ss_pred ceeEEEe
Q 045525 273 KDIRVRR 279 (295)
Q Consensus 273 k~vWark 279 (295)
+.+-++.
T Consensus 79 r~l~V~~ 85 (103)
T 1s79_A 79 TDLLILF 85 (103)
T ss_dssp TTCEEEE
T ss_pred EEEEEEE
Confidence 9986653
No 60
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.59 E-value=4.4e-08 Score=76.65 Aligned_cols=83 Identities=22% Similarity=0.237 Sum_probs=66.1
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEee-c--cCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMG-C--CRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~-~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
..+.|+||| +|.| ++++||+++|. +|| . |+.|.+- + +++..+||+|.|.+.+..+.+| . .....|+
T Consensus 22 ~~~~~~l~V---~nlp~~~t~~~l~~~F~-~~G-~-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~--l~g~~~~ 92 (114)
T 2cq4_A 22 ERDARTVFC---MQLAARIRPRDLEDFFS-AVG-K-VRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-G--LTGQRLL 92 (114)
T ss_dssp HHHHTEEEE---ESCCTTCCHHHHHHHHT-TTS-C-EEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-H--HTTEEET
T ss_pred cCCCCEEEE---eCCCCCCCHHHHHHHHH-hCC-C-EeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-H--cCCCEeC
Confidence 345689999 8988 99999999998 599 4 5555553 4 5888999999999999988888 4 2335789
Q ss_pred CceeEEEecccCCCCCC
Q 045525 272 GKDIRVRRFVPKPAPVA 288 (295)
Q Consensus 272 gk~vWarky~pk~~~~~ 288 (295)
|+.+-++...|++.+.+
T Consensus 93 g~~l~V~~a~~~~~~~~ 109 (114)
T 2cq4_A 93 GVPIIVQASQAEKNRLS 109 (114)
T ss_dssp TEEEEEEEHHHHHHHHS
T ss_pred CeEEEEEecCCCccCCC
Confidence 99999999888766543
No 61
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.58 E-value=5.5e-08 Score=79.22 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=66.8
Q ss_pred CCCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEee-c--cCCCCceEEEEecCHHHHHHHhCCCCcccEE
Q 045525 195 NDADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMG-C--CRDQSLYARVIVRSPAYITLILGENELKQFD 269 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~-~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~ 269 (295)
.-+++.+++|| +|.| ++++||+++|. +|| + |+.|.+- + +++..+||+|.|.+++....++..-+. ..
T Consensus 41 ~~~~~~~~l~V---~nLp~~~te~~L~~~F~-~~G-~-I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng--~~ 112 (129)
T 2kxn_B 41 ANPDPNCCLGV---FGLSLYTTERDLREVFS-KYG-P-IADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG--ME 112 (129)
T ss_dssp SCCCCSSCBCE---ETCTTSCCHHHHHHHHT-TTS-C-EEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTT--CC
T ss_pred CCCCCCCEEEE---eCCCCCCCHHHHHHHHH-hcC-C-eEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC--CE
Confidence 34677899999 8998 99999999998 599 5 5555554 3 678899999999999998887763211 35
Q ss_pred ECCceeEEEecccCCCC
Q 045525 270 IHGKDIRVRRFVPKPAP 286 (295)
Q Consensus 270 Ingk~vWarky~pk~~~ 286 (295)
|+|+.+-++...||++.
T Consensus 113 i~g~~l~V~~a~~~~p~ 129 (129)
T 2kxn_B 113 LDGRRIRVDFSITKRPH 129 (129)
T ss_dssp SSSSCCEESCCSSSSCC
T ss_pred ECCEEEEEEEecCCCCC
Confidence 89999999998888763
No 62
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.58 E-value=3.9e-08 Score=79.39 Aligned_cols=87 Identities=13% Similarity=0.092 Sum_probs=66.2
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCcee---EEEeec-cCCCCceEEEEecCHHHHHHH---hCCCCccc
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVE---DIKMGC-CRDQSLYARVIVRSPAYITLI---LGENELKQ 267 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve---~v~M~~-~~~qplfarivf~s~~~v~~v---L~g~~~~k 267 (295)
....++||| +|.| ++|+||+++|. +|| .+.+ ++.+.+ ++++.+||+|.|.+. ..... |+|. ...
T Consensus 20 ~~~~~~lfV---~nL~~~~te~~L~~~F~-~~G-~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~-~~~ 92 (131)
T 2m2b_A 20 ENANDTIIL---RNLNPHSTMDSILGALA-PYA-VLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQAL-HPP 92 (131)
T ss_dssp SCCCCEEEE---CSCCTTCCSHHHHHHHG-GGC-CCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTC-CCS
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHH-HhC-CcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCC-CCC
Confidence 456789999 9999 99999999999 599 5533 344444 899999999999999 54444 4453 235
Q ss_pred EEECCceeEEEecccCCCCCCCC
Q 045525 268 FDIHGKDIRVRRFVPKPAPVASP 290 (295)
Q Consensus 268 f~Ingk~vWarky~pk~~~~~~~ 290 (295)
+.|+|+.+-++...|+++....+
T Consensus 93 ~~~~gr~l~V~~a~~~~~~~~~~ 115 (131)
T 2m2b_A 93 LTIDGKTINVEFAKGSKRDMASN 115 (131)
T ss_dssp CCGGGCCCCCEECCCSCCCCCCC
T ss_pred ccCCCEEEEEEECCCCCCCCCCC
Confidence 67899999999888887665433
No 63
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=2.5e-07 Score=71.98 Aligned_cols=79 Identities=11% Similarity=0.003 Sum_probs=59.8
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEee-c-cCCCCceEEEEecCHHHHHHHhCCCCcccEEECC
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMG-C-CRDQSLYARVIVRSPAYITLILGENELKQFDIHG 272 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~-~-~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ing 272 (295)
.+..++||| +|.| ++++||+++|. +|| . |+.+.+- + .++...||+|.|.+++..+.++..-+ ...|+|
T Consensus 12 ~~~~~~l~V---~nlp~~~~~~~l~~~f~-~~G-~-i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~--g~~~~g 83 (114)
T 2do0_A 12 GRLGSTVFV---ANLDYKVGWKKLKEVFS-MAG-V-VVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN--GQLLFD 83 (114)
T ss_dssp CCCCSCEEE---ESCCTTCCHHHHHHHHT-TTS-C-EEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHT--TCEETT
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHH-hcC-C-eEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhC--CCEeCC
Confidence 456789999 8988 99999999999 599 5 4445443 3 67778999999999998877765211 126899
Q ss_pred ceeEEEecccC
Q 045525 273 KDIRVRRFVPK 283 (295)
Q Consensus 273 k~vWarky~pk 283 (295)
+.+-++...++
T Consensus 84 ~~l~v~~a~~~ 94 (114)
T 2do0_A 84 RPMHVKMDERA 94 (114)
T ss_dssp EECEEEECSCC
T ss_pred CEEEEEEcccC
Confidence 99987765533
No 64
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.57 E-value=2.2e-07 Score=72.11 Aligned_cols=85 Identities=16% Similarity=0.136 Sum_probs=67.2
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
.+++.+++|| +|.| +|++||++||.. || .+.+.|.|-. +++..+||+|.|.+++.....|.. + .-.|+
T Consensus 11 ~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G-~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~--~~~~~ 82 (104)
T 1wg5_A 11 DTANDGFVRL---RGLPFGCSKEEIVQFFSG-LE-IVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-H--KERIG 82 (104)
T ss_dssp SCSCCCEEEE---ESCCTTCCHHHHHHHTTT-CC-EEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-T--TCCSS
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cC-CcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-C--cchhC
Confidence 4567789998 8999 999999999995 99 5544465543 788999999999999999999986 3 24689
Q ss_pred CceeEEEecccCCCCCC
Q 045525 272 GKDIRVRRFVPKPAPVA 288 (295)
Q Consensus 272 gk~vWarky~pk~~~~~ 288 (295)
|+.|.+.+..++.-...
T Consensus 83 gr~i~v~~~~~~~~~~~ 99 (104)
T 1wg5_A 83 HRYIEIFKSSRAEVRTS 99 (104)
T ss_dssp SSCCEEEEECTTTSCCS
T ss_pred CcEEEEEECCHHHHHHh
Confidence 99998887766654433
No 65
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.57 E-value=1.6e-07 Score=76.94 Aligned_cols=86 Identities=17% Similarity=0.188 Sum_probs=68.4
Q ss_pred CCCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEee-c--cCCCCceEEEEecCHHHHHHHhCCCCcccEE
Q 045525 195 NDADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMG-C--CRDQSLYARVIVRSPAYITLILGENELKQFD 269 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~-~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~ 269 (295)
..+++.+|||| +|.| ++++||+++|.+ || + |+.|.+- + +++..+||+|.|.+.+..+.++..-+.. .
T Consensus 42 ~~~~~~~~l~V---~nLp~~~te~~L~~~F~~-~G-~-i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~--~ 113 (135)
T 2lea_A 42 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEK-YG-R-VGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA--V 113 (135)
T ss_dssp SSGGGCCCEEE---ECCCSSCHHHHHHHHHGG-GS-C-CSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTC--C
T ss_pred CCCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cC-C-EEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC--E
Confidence 33556789999 8988 999999999985 99 5 4555553 3 7888999999999999999988753332 4
Q ss_pred ECCceeEEEecccCCCCCC
Q 045525 270 IHGKDIRVRRFVPKPAPVA 288 (295)
Q Consensus 270 Ingk~vWarky~pk~~~~~ 288 (295)
|+|+.+-++...|+++++.
T Consensus 114 i~g~~l~V~~a~~~~~~~~ 132 (135)
T 2lea_A 114 LDGRELRVQMARYGRPPDS 132 (135)
T ss_dssp SSSSCCEEEECCCCCCCTT
T ss_pred ECCEEEEEEECCCCCCCcc
Confidence 8999999998888766653
No 66
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.56 E-value=5.5e-07 Score=71.54 Aligned_cols=87 Identities=13% Similarity=0.184 Sum_probs=68.4
Q ss_pred CCCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEE
Q 045525 195 NDADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDI 270 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~I 270 (295)
..++..+++|| +|.| ++++||+++|.+ || + |+.+.+.. +++..+||+|.|.+.+....++..-+ ...|
T Consensus 30 ~~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G-~-v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~--g~~~ 101 (124)
T 2kt5_A 30 EGVETGAKLLV---SNLDFGVSDADIQELFAE-FG-T-LKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYK--GVPL 101 (124)
T ss_dssp CCCSSCEEEEE---ESCCSSCCHHHHHHHHHT-TS-C-CSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHT--TEES
T ss_pred CCCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cC-C-eeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcC--CCEE
Confidence 34567789999 8988 999999999995 99 4 55565544 67889999999999999888766322 2378
Q ss_pred CCceeEEEecccCCCCCCC
Q 045525 271 HGKDIRVRRFVPKPAPVAS 289 (295)
Q Consensus 271 ngk~vWarky~pk~~~~~~ 289 (295)
+|+.+-++...|+..++..
T Consensus 102 ~g~~l~V~~a~~~~~~~~~ 120 (124)
T 2kt5_A 102 DGRPMDIQLVASQIDLEHH 120 (124)
T ss_dssp SSCEEEEEEECCTTCCCCC
T ss_pred CCcEEEEEEeCCCCCCCCC
Confidence 9999999888887666543
No 67
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.56 E-value=1.1e-07 Score=75.11 Aligned_cols=85 Identities=15% Similarity=0.171 Sum_probs=66.8
Q ss_pred CCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCcee
Q 045525 198 DTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGKDI 275 (295)
Q Consensus 198 ~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~v 275 (295)
+..++||| ++.| ++|+|++++|.+ || . |+.|.|-. ..+||+|.|.+++.....+...+.....|+||.+
T Consensus 13 ~p~~~l~V---~nLp~~~te~~L~~~F~~-fG-~-v~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 13 APSRVLHI---RKLPGEVTETEVIALGLP-FG-K-VTNILMLK---GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp SCCSEEEE---ESCCTTCCHHHHHHTTTT-TS-C-EEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCEEEE---eCCCCCCCHHHHHHHHHh-cC-C-EEEEEEEC---CCCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 45689999 8988 999999999995 99 4 55566533 3799999999999887777643233568999999
Q ss_pred EEEecccCCCCCCCCC
Q 045525 276 RVRRFVPKPAPVASPS 291 (295)
Q Consensus 276 Warky~pk~~~~~~~~ 291 (295)
.+....+++.+...++
T Consensus 84 ~V~~a~~~~~~~~~~~ 99 (101)
T 2cq1_A 84 YIQYSNHKELKTSGPS 99 (101)
T ss_dssp EEEECSCSSCCCCCCS
T ss_pred EEEEcCcccCcCCCCC
Confidence 9999888887775544
No 68
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.55 E-value=4.2e-08 Score=74.08 Aligned_cols=82 Identities=17% Similarity=0.086 Sum_probs=55.1
Q ss_pred ceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEE-eec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCcee
Q 045525 201 RTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIK-MGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIHGKDI 275 (295)
Q Consensus 201 Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~-M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~v 275 (295)
.|+|| +|.| +|++||+++|. .||..-|+.+. +.+ ++++.+||+|.|.+.+..+..+..-+. ..++|+.+
T Consensus 2 ~~l~V---~nL~~~~t~~~l~~~F~-~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g--~~~~gr~i 75 (90)
T 3p5t_L 2 IALYI---GNLTWWTTDEDLTEAVH-SLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPK--RELHGQNP 75 (90)
T ss_dssp --CEE---ESCCTTCCHHHHHHHHH-TTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGG--SCSSSCCC
T ss_pred eEEEE---eCCCCCCCHHHHHHHHH-HhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCC--CeeCCEEE
Confidence 46777 8888 99999999998 59931344444 444 788999999999999998877643221 25899999
Q ss_pred EEEecccCCCCCC
Q 045525 276 RVRRFVPKPAPVA 288 (295)
Q Consensus 276 Warky~pk~~~~~ 288 (295)
-++...|+++++.
T Consensus 76 ~V~~~~~~~~~~~ 88 (90)
T 3p5t_L 76 VVTPSNKLEHHHH 88 (90)
T ss_dssp EECCC--------
T ss_pred EEEECCCCccccC
Confidence 9999998866654
No 69
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.54 E-value=5.9e-07 Score=67.63 Aligned_cols=81 Identities=16% Similarity=0.161 Sum_probs=63.7
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCc
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGK 273 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk 273 (295)
.+.+.+++|| +|.| ++++||+++|.+ || + |+.+.+-+ .||+|.|.+.+....++..- ....|+|+
T Consensus 6 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G-~-v~~v~~~~-----~~afV~f~~~~~a~~A~~~l--~g~~~~g~ 72 (92)
T 2dgt_A 6 SGKASTKLHV---GNISPTCTNQELRAKFEE-YG-P-VIECDIVK-----DYAFVHMERAEDAVEAIRGL--DNTEFQGK 72 (92)
T ss_dssp CCCSSEEEEE---ESCCSSCCHHHHHHHHHT-TS-C-CCEEEECS-----SEEEEEESCHHHHHHHHHHH--TTEEETTE
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cC-C-eEEEEEEC-----CEEEEEECCHHHHHHHHHHh--CCCeeCCc
Confidence 4667899999 8988 999999999995 99 4 66666643 29999999998887777531 12368999
Q ss_pred eeEEEecccCCCCCCC
Q 045525 274 DIRVRRFVPKPAPVAS 289 (295)
Q Consensus 274 ~vWarky~pk~~~~~~ 289 (295)
.+-++...|++.....
T Consensus 73 ~l~V~~a~~~~~~~~~ 88 (92)
T 2dgt_A 73 RMHVQLSTSRLRTASG 88 (92)
T ss_dssp EEEEEESSCCCSCCCC
T ss_pred EEEEEEccCCCCCCCC
Confidence 9999999888766543
No 70
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.54 E-value=1.9e-08 Score=80.39 Aligned_cols=82 Identities=16% Similarity=0.178 Sum_probs=65.4
Q ss_pred CCCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEE
Q 045525 195 NDADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDI 270 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~I 270 (295)
..+.+.+++|| +|.| ++++||++||. .|| .+.+.+.|.+ +++..+||+|.|.+++..+..|. .+ ...|
T Consensus 20 ~~~~~~~~l~V---~nLp~~~te~~l~~~F~-~~G-~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~--g~~~ 91 (124)
T 1wel_A 20 SPHEAGFCVYL---KGLPFEAENKHVIDFFK-KLD-IVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RH--KQYM 91 (124)
T ss_dssp SCCCCCCEEEE---ECCCTTCCHHHHHHHSC-SSC-BCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SC--SBCS
T ss_pred CCCCCCcEEEE---eCCCCCCCHHHHHHHHH-hcC-CccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hC--CCeE
Confidence 34567789999 8998 99999999998 599 5555344443 78899999999999999998887 33 3468
Q ss_pred CCceeEEEecccCC
Q 045525 271 HGKDIRVRRFVPKP 284 (295)
Q Consensus 271 ngk~vWarky~pk~ 284 (295)
+|+.|.+....++.
T Consensus 92 ~gr~i~V~~a~~~~ 105 (124)
T 1wel_A 92 GNRFIQVHPITKKG 105 (124)
T ss_dssp TTSCBEEEEECHHH
T ss_pred CCcEEEEEECCHHH
Confidence 99999988776654
No 71
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.54 E-value=2e-07 Score=75.02 Aligned_cols=87 Identities=13% Similarity=0.132 Sum_probs=65.4
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCc
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGK 273 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk 273 (295)
-+++.++||| +|.| +||+||+++|.+ || . |..|.|-. ..+||+|.|.+++.....+.........|+||
T Consensus 12 ~~~~~~~LfV---~nLp~~vte~dL~~lF~~-fG-~-V~~v~i~~---~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr 82 (105)
T 1sjq_A 12 SGVPSRVIHI---RKLPIDVTEGEVISLGLP-FG-K-VTNLLMLK---GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ 82 (105)
T ss_dssp CCCCCCEEEE---CSCCTTSCHHHHHHHHHH-HC-C-EEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTSCCEETTE
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cC-C-EEEEEEEc---CCCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 3667899999 9999 999999999995 99 5 55555532 37999999999887666665221223479999
Q ss_pred eeEEEecccCCCCCCCCC
Q 045525 274 DIRVRRFVPKPAPVASPS 291 (295)
Q Consensus 274 ~vWarky~pk~~~~~~~~ 291 (295)
.+.+....+|+..+.+..
T Consensus 83 ~l~V~~A~~~~~~~~~~~ 100 (105)
T 1sjq_A 83 PIYIQFSNHKELKTDSSP 100 (105)
T ss_dssp ECCBCCCSSSSCCCTTC-
T ss_pred EEEEEEcCCCCCCccccc
Confidence 999888888877765443
No 72
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.54 E-value=2e-07 Score=72.45 Aligned_cols=78 Identities=19% Similarity=0.202 Sum_probs=59.4
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEe-ec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKM-GC--CRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M-~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
--+..+||| ++.| +|++||+++|. +|| + |+.+.+ .+ ++++.+||+|.|.+++....++..-+ ...|+
T Consensus 16 ~~~gt~lfV---~nLp~~~te~~L~~~F~-~~G-~-I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ln--g~~~~ 87 (99)
T 4fxv_A 16 YFQGTNLIV---NYLPQNMTQDELRSLFS-SIG-E-VESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLN--GLRLQ 87 (99)
T ss_dssp CCCCSEEEE---ESCCTTCCHHHHHHHHH-TTS-C-EEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHT--TCEET
T ss_pred cCCCCEEEE---eCCCCCCCHHHHHHHHH-hcC-C-EEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhC--CCEEC
Confidence 344568999 9999 99999999998 599 5 455544 33 78889999999999998777654211 12689
Q ss_pred CceeEEEeccc
Q 045525 272 GKDIRVRRFVP 282 (295)
Q Consensus 272 gk~vWarky~p 282 (295)
|+.+-++...|
T Consensus 88 gr~l~V~~AkP 98 (99)
T 4fxv_A 88 SKTIKVSYARP 98 (99)
T ss_dssp TEECEEEECCB
T ss_pred CEEEEEEEeeC
Confidence 99998877655
No 73
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.54 E-value=2.1e-07 Score=73.85 Aligned_cols=85 Identities=16% Similarity=0.202 Sum_probs=65.7
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEe-ec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEE
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKM-GC--CRDQSLYARVIVRSPAYITLILGENELKQFDI 270 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M-~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~I 270 (295)
...+.++||| +|.| +|++||+++|. +|| . |+.|.| .+ ++...+||+|.|.+++....++..-+. ..|
T Consensus 18 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~-~~G-~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~ 89 (126)
T 3ex7_B 18 RSVEGWILFV---TGVHEEATEEDIHDKFA-EYG-E-IKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNG--QDL 89 (126)
T ss_dssp CCSSSEEEEE---ESCCTTCCHHHHHHHHH-TTS-C-EEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTT--CBS
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHH-hcC-C-eEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC--Cee
Confidence 4556789999 8988 99999999999 599 4 555555 44 778899999999999998877642111 247
Q ss_pred CCceeEEEecccCCCCCC
Q 045525 271 HGKDIRVRRFVPKPAPVA 288 (295)
Q Consensus 271 ngk~vWarky~pk~~~~~ 288 (295)
+|+.+-+....|++++..
T Consensus 90 ~g~~l~v~~a~~~~~~~~ 107 (126)
T 3ex7_B 90 MGQPISVDWCFVRGPPKG 107 (126)
T ss_dssp SSSBCEEEESEESSSCCC
T ss_pred CCeEEEEEEecCCCCCCC
Confidence 999999988887766543
No 74
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.53 E-value=1.9e-07 Score=71.34 Aligned_cols=85 Identities=18% Similarity=0.314 Sum_probs=66.0
Q ss_pred CCCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECC
Q 045525 195 NDADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHG 272 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ing 272 (295)
....+.+++|| +|.| ++++||+++|. +|| -|+.+.|. +...||+|.|.+.+....++..-+. ..|+|
T Consensus 10 ~~~~~~~~l~V---~nlp~~~t~~~l~~~F~-~~G--~i~~v~~~---~~kg~afV~f~~~~~a~~a~~~l~g--~~~~g 78 (99)
T 2cpj_A 10 KTFTQRSRLFV---GNLPPDITEEEMRKLFE-KYG--KAGEVFIH---KDKGFGFIRLETRTLAEIAKVELDN--MPLRG 78 (99)
T ss_dssp CCCCCTTEEEE---ESCCTTCCHHHHHHHTS-TTC--CCSEEEEE---TTTTEEEEECSSSHHHHHHHHHHTT--CCBTT
T ss_pred CcCCCCCEEEE---eCCCCCCCHHHHHHHHh-hcC--CeEEEEEe---cCCCEEEEEECCHHHHHHHHHHhCC--CEeCC
Confidence 34567899999 8888 99999999999 499 46677773 3478999999999988777642111 14899
Q ss_pred ceeEEEecccCCCCCCCC
Q 045525 273 KDIRVRRFVPKPAPVASP 290 (295)
Q Consensus 273 k~vWarky~pk~~~~~~~ 290 (295)
+.+-++...|++.....+
T Consensus 79 ~~l~v~~a~~~~~~~~g~ 96 (99)
T 2cpj_A 79 KQLRVRFACHSASLTSGP 96 (99)
T ss_dssp BCCEEEESSCCSCCCCCC
T ss_pred ceEEEEEcCCCCCCCCCC
Confidence 999999988887766554
No 75
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.53 E-value=2.1e-07 Score=77.37 Aligned_cols=83 Identities=14% Similarity=0.259 Sum_probs=65.4
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
-+++.|+||| +|.| +|++||+++|. .|| ++.+-..+.+ ++++.+||+|.|.+++.....|... ...++
T Consensus 9 ~~~~~~~l~V---~nLp~~~te~~l~~~F~-~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~---~~~~~ 80 (196)
T 1l3k_A 9 EPEQLRKLFI---GGLSFETTDESLRSHFE-QWG-TLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR---PHKVD 80 (196)
T ss_dssp CCGGGGEEEE---ESCCTTCCHHHHHHHHG-GGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTC---SCEET
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHH-hCC-CEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcC---CCEEC
Confidence 4678899999 8999 99999999999 499 6544444444 6788999999999999999999762 34789
Q ss_pred CceeEEEecccCCCC
Q 045525 272 GKDIRVRRFVPKPAP 286 (295)
Q Consensus 272 gk~vWarky~pk~~~ 286 (295)
|+.+.++...++...
T Consensus 81 g~~l~v~~~~~~~~~ 95 (196)
T 1l3k_A 81 GRVVEPKRAVSREDS 95 (196)
T ss_dssp TEECEEEECCC----
T ss_pred CEEeeeecccCcccc
Confidence 999999888776543
No 76
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.53 E-value=2.9e-07 Score=69.89 Aligned_cols=79 Identities=11% Similarity=0.164 Sum_probs=63.4
Q ss_pred CceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCce
Q 045525 200 DRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGENELKQFDIHGKD 274 (295)
Q Consensus 200 ~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~ 274 (295)
.|++|| +|.| ++++||+++|. +|| . |+.+.+-. +++..+||+|.|.+.+....++..-+ ...|+|+.
T Consensus 2 ~~~l~V---~nLp~~~t~~~l~~~F~-~~G-~-i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~--g~~~~g~~ 73 (96)
T 2x1f_A 2 SRVVYL---GSIPYDQTEEQILDLCS-NVG-P-VINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLN--GYQLGSRF 73 (96)
T ss_dssp CSEEEE---ESCCTTCCHHHHHHHHH-TTS-C-EEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHT--TCEETTEE
T ss_pred CcEEEE---ECCCCCCCHHHHHHHHH-hcC-C-EEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhC--CCeECCeE
Confidence 589999 7888 99999999999 599 4 66666644 68889999999999999887764211 13789999
Q ss_pred eEEEecccCCCC
Q 045525 275 IRVRRFVPKPAP 286 (295)
Q Consensus 275 vWarky~pk~~~ 286 (295)
+-++...|++..
T Consensus 74 l~V~~a~~~~~~ 85 (96)
T 2x1f_A 74 LKCGYSSNSDIS 85 (96)
T ss_dssp CEEEECSCSSGG
T ss_pred EEEEEcCCCCCC
Confidence 999988887654
No 77
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=5.2e-07 Score=70.12 Aligned_cols=84 Identities=14% Similarity=0.172 Sum_probs=65.3
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCce
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGKD 274 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~ 274 (295)
+...+++|| +|.| ++++||+++|. +|| -|+.|.|-. ..+||+|.|.+.+....++..-+. ..|+|+.
T Consensus 22 ~~~~~~l~V---~nl~~~~t~~~l~~~F~-~~G--~i~~v~i~~---~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~ 90 (109)
T 1x4g_A 22 SPKNCTVYC---GGIASGLTDQLMRQTFS-PFG--QIMEIRVFP---EKGYSFVRFSTHESAAHAIVSVNG--TTIEGHV 90 (109)
T ss_dssp CSSCCEEEE---ECCSSCCCHHHHHHHHH-HHS--CEEEEEEET---TTTEEEEEESSHHHHHHHHHHHTT--CEETTEE
T ss_pred CCCCcEEEE---eCCCCCCCHHHHHHHHH-hcC--CeEEEEEeC---CCCEEEEEECCHHHHHHHHHHcCC--CEECCcE
Confidence 456789999 8998 99999999999 499 466776643 278999999999998877742111 3789999
Q ss_pred eEEEecccCCCCCCCCC
Q 045525 275 IRVRRFVPKPAPVASPS 291 (295)
Q Consensus 275 vWarky~pk~~~~~~~~ 291 (295)
+-++...|++....+++
T Consensus 91 l~v~~a~~~~~~~~~~~ 107 (109)
T 1x4g_A 91 VKCYWGKESPDMTSGPS 107 (109)
T ss_dssp CEEECCCCCCSSCCCCC
T ss_pred EEEEecCCCCCCCCCCC
Confidence 99998888776655443
No 78
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.52 E-value=4.4e-07 Score=71.77 Aligned_cols=80 Identities=13% Similarity=0.148 Sum_probs=62.8
Q ss_pred CCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEe-ec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEECC
Q 045525 198 DTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKM-GC--CRDQSLYARVIVRSPAYITLILGENELKQFDIHG 272 (295)
Q Consensus 198 ~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M-~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ing 272 (295)
.+.|++|| +|.| ++++||+++|. +|| + |+.|.| .+ ++++.+||+|.|.+++.....+ ..+ ...|+|
T Consensus 34 ~~~~~l~V---~nlp~~~t~~~l~~~F~-~~G-~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~--g~~~~g 104 (124)
T 2jwn_A 34 IDKRSVYV---GNVDYGSTAQDLEAHFS-SCG-S-INRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMD--ETVFRG 104 (124)
T ss_dssp HHHTEEEE---EEECTTCCHHHHHHHHH-TTS-C-EEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTT--TCEETT
T ss_pred CCCCEEEE---eCCCCCCCHHHHHHHHH-hcC-C-EEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcC--CCeECC
Confidence 45789999 8888 99999999999 599 5 445544 33 7888999999999999999888 322 346899
Q ss_pred ceeEEEecccCCCC
Q 045525 273 KDIRVRRFVPKPAP 286 (295)
Q Consensus 273 k~vWarky~pk~~~ 286 (295)
+.+-++...+.++.
T Consensus 105 ~~l~V~~a~~~~~~ 118 (124)
T 2jwn_A 105 RTIKVLPKRTNMPG 118 (124)
T ss_dssp EECEEEESSCCCSS
T ss_pred eEEEEEECCCCCCC
Confidence 99988876655443
No 79
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.51 E-value=2.3e-07 Score=67.97 Aligned_cols=77 Identities=14% Similarity=0.101 Sum_probs=59.5
Q ss_pred ceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCceeE
Q 045525 201 RTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIHGKDIR 276 (295)
Q Consensus 201 Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~vW 276 (295)
.|+|| +|.| ++++||+++|. +|| ++..-..+.+ ++++.+||+|.|.+++....++..-+. ..++|+.+-
T Consensus 2 ~~l~V---~nlp~~~t~~~l~~~f~-~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g--~~~~g~~l~ 74 (83)
T 3md1_A 2 FNLFV---GDLNVNVDDETLRNAFK-DFP-SYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQG--QDLNGRPLR 74 (83)
T ss_dssp EEEEE---ECCCTTCCHHHHHHHHT-TST-TEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTT--CEETTEECE
T ss_pred eEEEE---eCCCCCCCHHHHHHHHH-hcC-CeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcC--CeeCCcEEE
Confidence 36777 8998 99999999998 599 5444434444 688899999999999998887653111 258999999
Q ss_pred EEecccCC
Q 045525 277 VRRFVPKP 284 (295)
Q Consensus 277 arky~pk~ 284 (295)
++...||+
T Consensus 75 v~~a~~~~ 82 (83)
T 3md1_A 75 INWAAKLE 82 (83)
T ss_dssp EEECCCCC
T ss_pred EEecCcCC
Confidence 99888875
No 80
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.51 E-value=2.3e-07 Score=72.74 Aligned_cols=81 Identities=15% Similarity=0.232 Sum_probs=63.4
Q ss_pred CCCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEe-eccCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 195 NDADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKM-GCCRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M-~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
.-..+.+++|| +|.| ++++||+++|. +|| . |+.+.+ .+.+...+||+|.|.+.+..+.++..-+ ...|+
T Consensus 24 ~~~~~~~~l~V---~nLp~~~te~~l~~~F~-~~G-~-i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~--g~~~~ 95 (109)
T 2err_A 24 ENKSQPKRLHV---SNIPFRFRDPDLRQMFG-QFG-K-ILDVEIIFNERGSKGFGFVTFENSADADRAREKLH--GTVVE 95 (109)
T ss_dssp SCTTCCCEEEE---ESCCTTCCHHHHHHHGG-GTC-C-CSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHT--TCEET
T ss_pred cCCCCCCEEEE---ECCCCcCCHHHHHHHHH-hcC-C-EEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcC--CCEEC
Confidence 44667899999 8988 99999999999 599 5 444555 4455688999999999998887765311 12589
Q ss_pred CceeEEEecccC
Q 045525 272 GKDIRVRRFVPK 283 (295)
Q Consensus 272 gk~vWarky~pk 283 (295)
|+.+-++...||
T Consensus 96 g~~l~V~~a~~~ 107 (109)
T 2err_A 96 GRKIEVNNATAR 107 (109)
T ss_dssp TEECEEEECCCS
T ss_pred CEEEEEEECCCC
Confidence 999999988776
No 81
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=3.5e-07 Score=69.71 Aligned_cols=78 Identities=10% Similarity=0.043 Sum_probs=62.5
Q ss_pred CCCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHh---CCCCcccEE
Q 045525 195 NDADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLIL---GENELKQFD 269 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL---~g~~~~kf~ 269 (295)
.-++..+++|| +|.| ++++||+++|.+ || .+...+. .++..+||+|.|.+.+....++ +|. .
T Consensus 14 ~~~~~~~~l~V---~nL~~~~t~~~l~~~F~~-~G-~v~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~-----~ 80 (97)
T 2e5j_A 14 EGAPLAADVYV---GNLPRDARVSDLKRALRE-LG-SVPLRLT---WQGPRRRAFLHYPDSAAAQQAVSCLQGL-----R 80 (97)
T ss_dssp SSSCCCCEEEE---ECCCTTCCHHHHHHHHHH-TT-CCCSEEE---EETTTTEEEEECSSHHHHHHHHHHHTTC-----C
T ss_pred CCCCCCCEEEE---eCCCCcCcHHHHHHHHHh-cC-CEEEEEE---cCCCCcEEEEEECCHHHHHHHHHHhCCC-----E
Confidence 34566789999 8888 999999999994 99 5533333 3578899999999999877766 453 5
Q ss_pred ECCceeEEEecccCCC
Q 045525 270 IHGKDIRVRRFVPKPA 285 (295)
Q Consensus 270 Ingk~vWarky~pk~~ 285 (295)
|+|+.+.++...|+++
T Consensus 81 ~~g~~l~V~~a~~~~~ 96 (97)
T 2e5j_A 81 LGTDTLRVALARQQRD 96 (97)
T ss_dssp SSSSCCEEEECCCCCC
T ss_pred ECCcEEEEEEcCCCCC
Confidence 8999999999888865
No 82
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.50 E-value=1.4e-06 Score=66.48 Aligned_cols=85 Identities=16% Similarity=0.115 Sum_probs=65.0
Q ss_pred CCCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECC
Q 045525 195 NDADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHG 272 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ing 272 (295)
......+++|| +|.| ++++||+++|.+ ||+.-|+++.+- ..||+|.|.+.+....++..-+ ...|+|
T Consensus 10 ~~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~g~g~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~--g~~~~g 78 (99)
T 2cpd_A 10 DTMSSVKILYV---RNLMLSTSEEMIEKEFNN-IKPGAVERVKKI-----RDYAFVHFSNREDAVEAMKALN--GKVLDG 78 (99)
T ss_dssp SCSSCCCEEEE---ESCCTTCCHHHHHHHHHT-TSTTCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHS--SEEETT
T ss_pred cccCCcCEEEE---eCCCCCCCHHHHHHHHHh-cCCcceEEEEEe-----CCeEEEEeCCHHHHHHHHHHhC--CCEeCC
Confidence 34567799999 8888 999999999995 942256666663 4599999999999887766322 236899
Q ss_pred ceeEEEecccCCCCCCCC
Q 045525 273 KDIRVRRFVPKPAPVASP 290 (295)
Q Consensus 273 k~vWarky~pk~~~~~~~ 290 (295)
+.+-++...|+++....|
T Consensus 79 ~~l~v~~a~~~~~~~~~~ 96 (99)
T 2cpd_A 79 SPIEVTLAKPVDKDSSGP 96 (99)
T ss_dssp EEEEEECCCCCCCCCCCC
T ss_pred cEEEEEECCCCCCCCCCC
Confidence 999999998887655443
No 83
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.49 E-value=2.3e-07 Score=73.73 Aligned_cols=77 Identities=14% Similarity=0.053 Sum_probs=61.1
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHh---CCCCcccEE
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLIL---GENELKQFD 269 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL---~g~~~~kf~ 269 (295)
+...|++|| ++.| +++++++++|. +|| .+.+...+.+ ++++.+||+|.|.+.+..+..+ +|. .
T Consensus 3 ~~p~~~lfV---~nL~~~~te~~L~~~F~-~~G-~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~-----~ 72 (110)
T 3s8s_A 3 QIPLKEVTF---ARLNDNVRETFLKDMCR-KYG-EVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLT-----S 72 (110)
T ss_dssp CSCCCEEEE---ESCCTTCCHHHHHHHHT-TTS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-----E
T ss_pred CCCCcEEEE---ECCCCCCCHHHHHHHHH-hcC-CeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCC-----E
Confidence 345689999 8888 99999999998 599 5544444555 6899999999999999987775 453 6
Q ss_pred ECCceeEEEecccC
Q 045525 270 IHGKDIRVRRFVPK 283 (295)
Q Consensus 270 Ingk~vWarky~pk 283 (295)
++|+.+-+....++
T Consensus 73 ~~gr~i~V~~a~~~ 86 (110)
T 3s8s_A 73 VMGNIIHAQLDIKG 86 (110)
T ss_dssp ETTEECEEEECSTT
T ss_pred ECCeEEEEEECCCC
Confidence 89999988776544
No 84
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.49 E-value=1.5e-07 Score=68.03 Aligned_cols=71 Identities=17% Similarity=0.290 Sum_probs=58.2
Q ss_pred ceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCcee
Q 045525 201 RTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGENELKQFDIHGKDI 275 (295)
Q Consensus 201 Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~v 275 (295)
+|+|| +|.| ++++|++++|. +|| + |+.+.+.. ++++.+||+|.|.+++..+.++...+ ..++|+.+
T Consensus 1 ~~l~v---~nlp~~~t~~~l~~~F~-~~G-~-v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~---~~~~g~~l 71 (77)
T 1uaw_A 1 CKMFI---GGLSWQTTQEGLREYFG-QFG-E-VKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR---HELDSKTI 71 (77)
T ss_dssp CCEEE---ESCCSSCCSHHHHHHHT-TTS-C-CCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT---CCCSSCCC
T ss_pred CEEEE---eCCCCCCCHHHHHHHHH-hcC-C-EEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC---CccCCEEE
Confidence 47888 8888 99999999999 499 5 45555543 68889999999999999999998754 67899998
Q ss_pred EEEec
Q 045525 276 RVRRF 280 (295)
Q Consensus 276 Warky 280 (295)
-++..
T Consensus 72 ~v~~a 76 (77)
T 1uaw_A 72 DPKVA 76 (77)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 77653
No 85
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.48 E-value=2e-07 Score=75.52 Aligned_cols=76 Identities=21% Similarity=0.390 Sum_probs=62.6
Q ss_pred CCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEe-ec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEECC
Q 045525 198 DTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKM-GC--CRDQSLYARVIVRSPAYITLILGENELKQFDIHG 272 (295)
Q Consensus 198 ~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M-~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ing 272 (295)
++.|++|| +|.| +|++||+++|.+ || + |+.+.+ .+ ++++.+||+|.|.+++..+..+... ..++|
T Consensus 1 k~~~~l~v---~nLp~~~t~~~l~~~F~~-~G-~-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~----~~~~g 70 (167)
T 2cjk_A 1 KESCKMFI---GGLNWDTTEDNLREYFGK-YG-T-VTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQ----HILDG 70 (167)
T ss_dssp CGGGEEEE---CSCCTTCCHHHHHHHHTT-TC-C-EEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSC----CEETT
T ss_pred CCCcEEEE---eCCCCCCCHHHHHHHHHh-CC-C-EEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcc----cccCC
Confidence 36789999 9999 999999999995 99 5 555554 44 6889999999999999999998853 38999
Q ss_pred ceeEEEecccC
Q 045525 273 KDIRVRRFVPK 283 (295)
Q Consensus 273 k~vWarky~pk 283 (295)
+.+.++...|+
T Consensus 71 ~~i~v~~~~~~ 81 (167)
T 2cjk_A 71 KVIDPKRAIPR 81 (167)
T ss_dssp EECCCEECCCH
T ss_pred eEcccccccch
Confidence 99988776554
No 86
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.47 E-value=2.8e-07 Score=70.35 Aligned_cols=86 Identities=19% Similarity=0.113 Sum_probs=66.0
Q ss_pred CCCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEE
Q 045525 195 NDADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDI 270 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~I 270 (295)
..+++.+++|| +|.| ++++||+++|. .|+ + -..+.+ ++++.+||+|.|.+++..+.++..-+. ..|
T Consensus 10 ~~~~~~~~l~V---~nLp~~~t~~~l~~~F~-~~~-~---~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~ 79 (102)
T 2fc8_A 10 ARSQPSKTLFV---KGLSEDTTEETLKESFD-GSV-R---ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED--GEI 79 (102)
T ss_dssp SSSCCCSSEEE---ECCCTTCCHHHHHHTST-TCS-E---EEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTT--CEE
T ss_pred CCCCCCCEEEE---eCCCCccCHHHHHHHhc-CCe-E---EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC--CeE
Confidence 34667899999 8998 99999999999 465 2 223333 788889999999999998877653111 368
Q ss_pred CCceeEEEecccCCCCCCCC
Q 045525 271 HGKDIRVRRFVPKPAPVASP 290 (295)
Q Consensus 271 ngk~vWarky~pk~~~~~~~ 290 (295)
+|+.+.++...||+.....+
T Consensus 80 ~g~~l~V~~a~~~~~~~~~~ 99 (102)
T 2fc8_A 80 DGNKVTLDWAKPKGEGGSGP 99 (102)
T ss_dssp TTEECEEEECCCCCSSSCSC
T ss_pred CCeEEEEEEecCCCCCCCCC
Confidence 99999999999987765544
No 87
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.47 E-value=1.6e-07 Score=73.86 Aligned_cols=81 Identities=15% Similarity=0.243 Sum_probs=63.7
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEee-c--cCCCCceEEEEecCHHHHHHHhCCCCcccEEE
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMG-C--CRDQSLYARVIVRSPAYITLILGENELKQFDI 270 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~-~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~I 270 (295)
.+++.+++|| +|.| ++++||+++|. +|| + |+.+.+- + ++++.+||+|.|.+++....++..-+. ..|
T Consensus 22 ~~~~~~~l~V---~nLp~~~te~~l~~~F~-~~G-~-i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g--~~i 93 (108)
T 2jrs_A 22 GSAGPMRLYV---GSLHFNITEDMLRGIFE-PFG-R-IESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG--FEL 93 (108)
T ss_dssp SCSSCEEEEE---ECCCSSCCHHHHHHHHT-TTS-C-EEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTT--CCS
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHH-hcC-C-eEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCC--CEE
Confidence 3667799999 8888 99999999998 599 5 5555554 3 678889999999999998877642111 358
Q ss_pred CCceeEEEecccCC
Q 045525 271 HGKDIRVRRFVPKP 284 (295)
Q Consensus 271 ngk~vWarky~pk~ 284 (295)
+|+.+-++...||.
T Consensus 94 ~g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 94 AGRPMKVGHVTERT 107 (108)
T ss_dssp SSSCCEEECSCSSC
T ss_pred CCEEEEEEEcccCC
Confidence 99999998887774
No 88
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.45 E-value=4.9e-07 Score=67.83 Aligned_cols=77 Identities=21% Similarity=0.305 Sum_probs=60.6
Q ss_pred CCCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCCCCcccEE
Q 045525 195 NDADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGENELKQFD 269 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g~~~~kf~ 269 (295)
.-++..+++|| +|.| ++++||+++|.+ || . |+.+.+.. +++..+||+|.|.+++....++..-+ ...
T Consensus 10 ~~~~~~~~l~v---~nlp~~~t~~~l~~~f~~-~G-~-v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~ 81 (95)
T 2cqc_A 10 ANPDPNCCLGV---FGLSLYTTERDLREVFSK-YG-P-IADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN--GME 81 (95)
T ss_dssp CSCCGGGCEEE---ESCCSSCCHHHHHHHHHT-TS-C-EEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHT--TEE
T ss_pred CCCCCCCEEEE---ECCCCCCCHHHHHHHHHh-cC-C-eeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhC--CCE
Confidence 34677899999 7888 999999999995 99 4 55665543 57888999999999999888776321 257
Q ss_pred ECCceeEEEe
Q 045525 270 IHGKDIRVRR 279 (295)
Q Consensus 270 Ingk~vWark 279 (295)
|+|+.+-++.
T Consensus 82 ~~g~~l~v~~ 91 (95)
T 2cqc_A 82 LDGRRIRVSG 91 (95)
T ss_dssp ETTEEEEEEC
T ss_pred ECCEEEEEEe
Confidence 8999887764
No 89
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.45 E-value=3.9e-07 Score=67.03 Aligned_cols=75 Identities=23% Similarity=0.332 Sum_probs=58.0
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEe-ec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKM-GC--CRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M-~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
+.+.+++|| +|.| ++++||+++|.+ || -|+.+.+ .+ +++..+||+|.|.+++....++..-+ ...++
T Consensus 4 ~~~~~~l~V---~nl~~~~~~~~l~~~f~~-~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--g~~~~ 75 (85)
T 3mdf_A 4 ATTKRVLYV---GGLAEEVDDKVLHAAFIP-FG--DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN--ESELF 75 (85)
T ss_dssp CCCSSEEEE---ECCCTTCCHHHHHHHHGG-GS--CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT--TCEET
T ss_pred CCCCCEEEE---ECCCCCCCHHHHHHHHhc-cC--CEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhC--CCEEC
Confidence 567899999 8998 999999999985 99 4556655 33 67889999999999999887763211 12579
Q ss_pred CceeEEEe
Q 045525 272 GKDIRVRR 279 (295)
Q Consensus 272 gk~vWark 279 (295)
|+.+-++.
T Consensus 76 g~~l~v~~ 83 (85)
T 3mdf_A 76 GRTIRVNL 83 (85)
T ss_dssp TEECEEEE
T ss_pred CcEEEEEE
Confidence 99887653
No 90
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.45 E-value=2.9e-07 Score=71.93 Aligned_cols=83 Identities=18% Similarity=0.317 Sum_probs=64.9
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCc
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGK 273 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk 273 (295)
.++..+++|| +|.| ++++||+++|. .|| .|+.+.+-..++..+||+|.|.+.+.....+..-+. ..++|+
T Consensus 4 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~-~~G--~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~ 75 (115)
T 3lqv_A 4 PPEVNRILYI---RNLPYKITAEEMYDIFG-KYG--PIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSG--FNVSNR 75 (115)
T ss_dssp CTTCCSEEEE---ESCCTTCCHHHHHHHHH-TTS--CEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTT--CBSSSC
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHH-hcC--CeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCC--CEECCe
Confidence 3667799999 8998 99999999999 599 566776655566789999999999987777552111 247999
Q ss_pred eeEEEecccCCCC
Q 045525 274 DIRVRRFVPKPAP 286 (295)
Q Consensus 274 ~vWarky~pk~~~ 286 (295)
.+-+..+.|++..
T Consensus 76 ~l~v~~a~~~~~~ 88 (115)
T 3lqv_A 76 YLVVLYYNANRAF 88 (115)
T ss_dssp BCEEEECCHHHHT
T ss_pred EEEEEEecCChhh
Confidence 9999988876544
No 91
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.45 E-value=3e-07 Score=70.32 Aligned_cols=82 Identities=13% Similarity=0.194 Sum_probs=64.2
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEee-c--cCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMG-C--CRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~-~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
.++.||+|| +|.| ++++||+++|. +|| . |+.+.+. + +++..+||+|.|.+.+....++..-+.. .++
T Consensus 5 ~~~~~~l~V---~nlp~~~~~~~l~~~f~-~~G-~-i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~--~~~ 76 (104)
T 1p1t_A 5 DRSLRSVFV---GNIPYEATEEQLKDIFS-EVG-P-VVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR--EFS 76 (104)
T ss_dssp HHHHSCEEE---ESCCTTSCHHHHHHHHH-TTS-C-CSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSB--SCS
T ss_pred CCCccEEEE---eCCCCcCCHHHHHHHHH-hcC-C-eeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC--eeC
Confidence 345689999 8998 99999999999 499 5 4444443 3 6788999999999999988877543322 469
Q ss_pred CceeEEEecccCCCC
Q 045525 272 GKDIRVRRFVPKPAP 286 (295)
Q Consensus 272 gk~vWarky~pk~~~ 286 (295)
|+.+-++...|++.+
T Consensus 77 g~~l~v~~a~~~~~~ 91 (104)
T 1p1t_A 77 GRALRVDNAASEKNK 91 (104)
T ss_dssp SSCBEEEETTCTTHH
T ss_pred CcEEEEEeCCCccch
Confidence 999999988877654
No 92
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.44 E-value=2e-07 Score=71.77 Aligned_cols=80 Identities=13% Similarity=0.104 Sum_probs=61.0
Q ss_pred CCCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec----cCCCCceEEEEecCHHHHHHHhCCCCcccE
Q 045525 195 NDADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC----CRDQSLYARVIVRSPAYITLILGENELKQF 268 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~----~~~qplfarivf~s~~~v~~vL~g~~~~kf 268 (295)
..+...||+|| +|.| ++++||+++|.+ || |+.+.|-. +++..+||+|.|.+.+....++ ..+. .
T Consensus 14 ~~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G---i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g--~ 83 (100)
T 2j76_E 14 LPKSPPYTAFL---GNLPYDVTEESIKEFFRG-LN---ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNE--E 83 (100)
T ss_dssp ------CEEEE---SCCSSCCSSSHHHHHSCS-SC---EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTT--C
T ss_pred CCCCCCcEEEE---eCCCCCCCHHHHHHHHHh-cC---CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCC--C
Confidence 45677899999 9998 999999999994 98 66666643 5778999999999999988888 4332 3
Q ss_pred EECCceeEEEecccCC
Q 045525 269 DIHGKDIRVRRFVPKP 284 (295)
Q Consensus 269 ~Ingk~vWarky~pk~ 284 (295)
.|+|+.+-++...|++
T Consensus 84 ~~~g~~l~V~~a~~~~ 99 (100)
T 2j76_E 84 SLGNRRIRVDVADQAQ 99 (100)
T ss_dssp CBTTBCCCCEECCCSC
T ss_pred EECCeEEEEEeccCCC
Confidence 5899999888877764
No 93
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.44 E-value=2.2e-06 Score=65.94 Aligned_cols=78 Identities=18% Similarity=0.210 Sum_probs=61.7
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCce
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGKD 274 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~ 274 (295)
....+++|| +|.| ++++||+++|.+ || -|+.+.+- ..||+|.|.+++....++..-+ ...|+|+.
T Consensus 8 ~~~~~~l~V---~nl~~~~t~~~l~~~F~~-~G--~i~~v~~~-----~~~afV~f~~~~~a~~A~~~l~--g~~~~g~~ 74 (103)
T 2dgu_A 8 MAKVKVLFV---RNLANTVTEEILEKAFSQ-FG--KLERVKKL-----KDYAFIHFDERDGAVKAMEEMN--GKDLEGEN 74 (103)
T ss_dssp CCCCCCEEE---ECCCTTCCHHHHHHHHHH-HS--CEEEEEEC-----SSCEEEEESSHHHHHHHHHHHT--TEEETTEE
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cC--CEEEEEEE-----CCEEEEEeCCHHHHHHHHHHHC--CCccCCCE
Confidence 456799999 8888 999999999995 99 46667663 3499999999999887775311 23689999
Q ss_pred eEEEecccCCCCC
Q 045525 275 IRVRRFVPKPAPV 287 (295)
Q Consensus 275 vWarky~pk~~~~ 287 (295)
+.++...|++.+.
T Consensus 75 l~v~~a~~~~~~~ 87 (103)
T 2dgu_A 75 IEIVFAKPPDQKR 87 (103)
T ss_dssp EEEEECCCCCCCC
T ss_pred EEEEEcCCCcccc
Confidence 9999888776654
No 94
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.43 E-value=3.7e-07 Score=71.63 Aligned_cols=86 Identities=14% Similarity=0.189 Sum_probs=64.4
Q ss_pred CCCceEEEEccCCcc--cCHHHHH---HHHHHhhCCCceeEEEeec--c---CCCCceEEEEecCHHHHHHHhCCCCccc
Q 045525 198 DTDRTLFATFSKGHP--ISRAELF---EFFIRRYGEDCVEDIKMGC--C---RDQSLYARVIVRSPAYITLILGENELKQ 267 (295)
Q Consensus 198 ~d~Rt~FvTFS~G~P--vse~Ei~---efF~~~yG~~cve~v~M~~--~---~~qplfarivf~s~~~v~~vL~g~~~~k 267 (295)
...+++|| +|.| ++++||+ ++|. +|| ++.+-.++.+ + ++..+||+|.|.+++..+..+..-+ .
T Consensus 13 ~~~~~l~V---~nLp~~~~~~~l~~~~~~F~-~~G-~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~ln--g 85 (111)
T 2cpi_A 13 VQKNLVFV---VGLSQRLADPEVLKRPEYFG-KFG-KIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVN--N 85 (111)
T ss_dssp CCSSCEEE---EEECTTTCCHHHHHSTTTTT-TTS-CEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHT--T
T ss_pred cCCCEEEE---ECCCCCCCHHHHHHHHHHhh-ccC-CEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhC--C
Confidence 34689999 8988 9999999 9999 599 5444444433 2 2556899999999999888776422 2
Q ss_pred EEECCceeEEEecccCCCCCCCC
Q 045525 268 FDIHGKDIRVRRFVPKPAPVASP 290 (295)
Q Consensus 268 f~Ingk~vWarky~pk~~~~~~~ 290 (295)
..|+|+.+-+....||......|
T Consensus 86 ~~~~gr~l~V~~a~~k~~~~~~~ 108 (111)
T 2cpi_A 86 VVVDGRTLKASLGTTKYCSYSGP 108 (111)
T ss_dssp EEETTEEEEEESCCCCSCSSTTT
T ss_pred CEECCEEEEEEecccccccccCC
Confidence 36899999999999987554433
No 95
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.43 E-value=6e-07 Score=72.04 Aligned_cols=81 Identities=16% Similarity=0.171 Sum_probs=62.0
Q ss_pred ceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEee-c-cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCceeE
Q 045525 201 RTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMG-C-CRDQSLYARVIVRSPAYITLILGENELKQFDIHGKDIR 276 (295)
Q Consensus 201 Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~-~-~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~vW 276 (295)
||+|| +|.| +|++||+++|. +|| + |+.+.+- + .+++.+||+|.|.+++....++...+ ...++|+.+-
T Consensus 1 R~l~V---~nlp~~~t~~~l~~~f~-~~G-~-i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--~~~~~g~~i~ 72 (166)
T 3md3_A 1 RVLYV---GNLDKAITEDILKQYFQ-VGG-P-IANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLN--GKQIENNIVK 72 (166)
T ss_dssp CEEEE---EEEETTCCHHHHHHHHG-GGS-C-EEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHT--TCEETTEECE
T ss_pred CEEEE---CCCCCcCCHHHHHHHHH-hcC-C-eEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcC--CCccCCCeeE
Confidence 78999 8999 99999999999 599 5 5555554 3 57788999999999999888774211 1267999999
Q ss_pred EEecccCCCCCCC
Q 045525 277 VRRFVPKPAPVAS 289 (295)
Q Consensus 277 arky~pk~~~~~~ 289 (295)
++...++......
T Consensus 73 v~~~~~~~~~~~~ 85 (166)
T 3md3_A 73 INWAFQSQQSSSD 85 (166)
T ss_dssp EEECCCCCCCCCT
T ss_pred EEEcCCCCCCCCC
Confidence 9888777654443
No 96
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.43 E-value=4.3e-07 Score=71.91 Aligned_cols=81 Identities=14% Similarity=0.033 Sum_probs=62.9
Q ss_pred CCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCcee
Q 045525 198 DTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGKDI 275 (295)
Q Consensus 198 ~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~v 275 (295)
+..++||| +|.| ++|+||+++|. +|| -|+.|.|-. ..+||+|.|.+++.....+...+.....|+|+.+
T Consensus 13 ~p~~~l~V---~nLp~~~te~~L~~~F~-~fG--~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 13 SVSPVVHV---RGLCESVVEADLVEALE-KFG--TICYVMMMP---FKRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp CCCSEEEE---ESCCSSCCHHHHHHHHT-TTS--CEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred CCCCEEEE---eCCCCCCCHHHHHHHHH-hCC--CEEEEEEEC---CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 34689999 8988 99999999999 499 455566633 3789999999999877777643333567999999
Q ss_pred EEEecccCCCCC
Q 045525 276 RVRRFVPKPAPV 287 (295)
Q Consensus 276 Warky~pk~~~~ 287 (295)
.+....+|+.+.
T Consensus 84 ~V~~a~~~~~~~ 95 (104)
T 1wex_A 84 FFNYSTSKRITR 95 (104)
T ss_dssp EEEECSSSSCCC
T ss_pred EEEEccCccccC
Confidence 988887766543
No 97
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.43 E-value=1.2e-06 Score=65.73 Aligned_cols=80 Identities=19% Similarity=0.175 Sum_probs=63.8
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec-cCCCCceEEEEecCHHHHHHHhCCCCcccEEECC
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC-CRDQSLYARVIVRSPAYITLILGENELKQFDIHG 272 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~-~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ing 272 (295)
.+.+.+++|| +|.| ++++||+++|.+ |+ +++-..+.+ .++..+||+|.|.+++....+|. .+ ...|+|
T Consensus 6 ~~~~~~~l~v---~nLp~~~t~~~l~~~F~~-~~--i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~--g~~~~g 76 (91)
T 2dgw_A 6 SGTTCHTVKL---RGAPFNVTEKNVMEFLAP-LK--PVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CN--REYMGG 76 (91)
T ss_dssp CCCCCCEEEE---ECCCSSCCHHHHHHHHTT-SC--CSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SC--SEEETT
T ss_pred CCCCccEEEE---ECCCCCCCHHHHHHHHhh-CC--ceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hC--CceeCC
Confidence 3567899999 8998 999999999996 54 443334444 78889999999999999888887 43 346899
Q ss_pred ceeEEEecccCC
Q 045525 273 KDIRVRRFVPKP 284 (295)
Q Consensus 273 k~vWarky~pk~ 284 (295)
+.+-++...|++
T Consensus 77 r~i~v~~a~~~~ 88 (91)
T 2dgw_A 77 RYIEVFREKSGP 88 (91)
T ss_dssp EEEEEEEESSCC
T ss_pred cEEEEEECCcCC
Confidence 999998887773
No 98
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.43 E-value=3.7e-07 Score=76.87 Aligned_cols=81 Identities=16% Similarity=0.205 Sum_probs=61.9
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEe-ec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKM-GC--CRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M-~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
.++.++||| +|.| ++++||+++|. .||+.-|+.|.+ .+ ++++.+||+|.|.+.+..+.++..-+ ...|+
T Consensus 52 ~~~~~~lfV---gnLp~~~te~~L~~~F~-~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~ln--g~~~~ 125 (156)
T 3n9u_C 52 RNRRAAVYV---GSFSWWTTDQQLIQVIR-SIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLP--GKVLN 125 (156)
T ss_dssp ----CEEEE---ECCCTTCCHHHHHHHHH-HTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHST--TCEET
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHH-HHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC--CCEEC
Confidence 457799999 8999 99999999998 599314555554 44 78999999999999999888876422 13789
Q ss_pred CceeEEEecccC
Q 045525 272 GKDIRVRRFVPK 283 (295)
Q Consensus 272 gk~vWarky~pk 283 (295)
|+.+-++...|+
T Consensus 126 Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 126 GEKVDVRPATRQ 137 (156)
T ss_dssp TEECEEEECCHH
T ss_pred CeEeEEEEcCCC
Confidence 999999987765
No 99
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.40 E-value=2.4e-06 Score=65.21 Aligned_cols=81 Identities=21% Similarity=0.212 Sum_probs=61.8
Q ss_pred CCCCceEEEEccCCcc--cCHHHHH----HHHHHhhCCCceeEEEeec-cCCCCceEEEEecCHHHHHHHhCCCCcccEE
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELF----EFFIRRYGEDCVEDIKMGC-CRDQSLYARVIVRSPAYITLILGENELKQFD 269 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~----efF~~~yG~~cve~v~M~~-~~~qplfarivf~s~~~v~~vL~g~~~~kf~ 269 (295)
..+..++|| +|.| ++++|++ ++|. +|| + |+.|.|-. ... ..||+|.|.+++.....+..-+ ...
T Consensus 6 ~~~~~~l~V---~nL~~~~~~~~l~~~l~~~F~-~~G-~-v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~--g~~ 76 (96)
T 2dgx_A 6 SGNGADVQV---SNIDYRLSRKELQQLLQEAFA-RHG-K-VKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLH--RYK 76 (96)
T ss_dssp CSSCEEEEE---ESCCTTSCHHHHHHHHHHHHH-HHS-C-EEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHT--TEE
T ss_pred CCCCCEEEE---ECCCCCCCHHHHHHHHHHhcc-ccC-c-EEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhC--CCE
Confidence 456789999 8988 9999999 9999 599 4 56666643 222 7799999999998877765322 236
Q ss_pred ECCceeEEEecccCCCC
Q 045525 270 IHGKDIRVRRFVPKPAP 286 (295)
Q Consensus 270 Ingk~vWarky~pk~~~ 286 (295)
++|+.+-++...|+..+
T Consensus 77 ~~gr~l~V~~a~~~~~~ 93 (96)
T 2dgx_A 77 IGSKKILVSLATGASGP 93 (96)
T ss_dssp ETTEEEEEEECCCSSCC
T ss_pred ECCeEEEEEEcCCCCCC
Confidence 89999999988776544
No 100
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.40 E-value=6.6e-07 Score=64.47 Aligned_cols=69 Identities=13% Similarity=0.314 Sum_probs=55.8
Q ss_pred eEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCceeE
Q 045525 202 TLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGENELKQFDIHGKDIR 276 (295)
Q Consensus 202 t~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~vW 276 (295)
|+|| +|.| ++++||+++|.+ || + |+.+.|-. ++++.+||+|.|.+++..+.++... ...|+|+.+-
T Consensus 1 ~l~v---~nLp~~~t~~~l~~~F~~-~G-~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~---~~~~~g~~l~ 71 (75)
T 1iqt_A 1 KIFV---GGLSPDTPEEKIREYFGG-FG-E-VESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK---YHNVGLSKCE 71 (75)
T ss_dssp CEEE---SCCCSSCCHHHHHHHHHH-HS-C-CSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTS---SCCBTTBCCC
T ss_pred CEEE---eCCCCCCCHHHHHHHHHh-cC-C-eEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhC---CCeECCEEEE
Confidence 4677 8988 999999999995 99 4 56666543 6888999999999999999999842 2358999887
Q ss_pred EEe
Q 045525 277 VRR 279 (295)
Q Consensus 277 ark 279 (295)
++.
T Consensus 72 v~~ 74 (75)
T 1iqt_A 72 IKV 74 (75)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 101
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=1e-06 Score=66.08 Aligned_cols=76 Identities=16% Similarity=0.275 Sum_probs=60.3
Q ss_pred CCCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCCCCcccEE
Q 045525 195 NDADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGENELKQFD 269 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g~~~~kf~ 269 (295)
..+++.+++|| +|.| ++++||+++|. +|| . |+.+.+.. +++..+||+|.|.+++....++..-+ ...
T Consensus 11 ~~~~~~~~l~V---~nlp~~~t~~~l~~~f~-~~G-~-v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~ 82 (94)
T 2e5h_A 11 GLAPSKSTVYV---SNLPFSLTNNDLYRIFS-KYG-K-VVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAIN--NKQ 82 (94)
T ss_dssp SCCCCTTSEEE---ESCCTTSCHHHHHHHTT-TTS-C-EEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTT--TEE
T ss_pred CCCCCCCEEEE---ECCCCCCCHHHHHHHHH-hcC-C-eEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcC--CCe
Confidence 34677899999 8988 99999999998 599 4 66666654 57889999999999999888775322 246
Q ss_pred ECCceeEEE
Q 045525 270 IHGKDIRVR 278 (295)
Q Consensus 270 Ingk~vWar 278 (295)
|+|+.+-++
T Consensus 83 ~~g~~l~v~ 91 (94)
T 2e5h_A 83 LFGRVIKAS 91 (94)
T ss_dssp ETTEEEEEE
T ss_pred eCCcEEEEE
Confidence 889988665
No 102
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.39 E-value=4.5e-07 Score=68.73 Aligned_cols=80 Identities=14% Similarity=0.058 Sum_probs=62.1
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
.++..+++|| +|.| ++++||+++|. +|| .+.+...+.+ +++..+||+|.|.+++..+.++...+. ..|+
T Consensus 11 ~~~~~~~l~v---~nLp~~~t~~~l~~~F~-~~G-~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g--~~~~ 83 (98)
T 2cqp_A 11 GKPGPTIIKV---QNMPFTVSIDEILDFFY-GYQ-VIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLND--RPIG 83 (98)
T ss_dssp CCCSSEEEEE---ESCCTTCCHHHHHHHTT-TSC-CCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTT--CEET
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHH-HcC-CccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCC--CeeC
Confidence 3556789999 8998 99999999999 599 5544444444 788899999999999998888854222 2789
Q ss_pred CceeEEEeccc
Q 045525 272 GKDIRVRRFVP 282 (295)
Q Consensus 272 gk~vWarky~p 282 (295)
|+.+-++...+
T Consensus 84 g~~l~V~~a~~ 94 (98)
T 2cqp_A 84 SRKVKLVLGSG 94 (98)
T ss_dssp TEECEEEESSC
T ss_pred CeEEEEEEcCC
Confidence 99998887543
No 103
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.39 E-value=1.1e-06 Score=72.29 Aligned_cols=85 Identities=16% Similarity=0.139 Sum_probs=66.0
Q ss_pred CCCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCCCCcccEE
Q 045525 195 NDADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGENELKQFD 269 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g~~~~kf~ 269 (295)
...++.++||| +|.| +|++||+++|. +|| . |+.|.|-. +++...||+|.|.+++....++..-+ ...
T Consensus 34 ~~~~~~~~l~V---~nlp~~~t~~~l~~~F~-~~G-~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~--g~~ 105 (156)
T 1h2v_Z 34 KLLKKSCTLYV---GNLSFYTTEEQIYELFS-KSG-D-IKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYIN--GTR 105 (156)
T ss_dssp TTTTTCCEEEE---ESCCTTCCHHHHHHHHG-GGS-C-EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT--TSE
T ss_pred ccCCCCCEEEE---eCCCCCCCHHHHHHHHH-hcC-C-eEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC--CCE
Confidence 34567799999 8988 99999999998 599 4 66666644 57788999999999999888876422 236
Q ss_pred ECCceeEEEecccCCCCC
Q 045525 270 IHGKDIRVRRFVPKPAPV 287 (295)
Q Consensus 270 Ingk~vWarky~pk~~~~ 287 (295)
|+|+.+-++...|+++..
T Consensus 106 ~~g~~l~V~~a~~~~~~~ 123 (156)
T 1h2v_Z 106 LDDRIIRTDWDAGFKEGR 123 (156)
T ss_dssp ETTEECEEEEESCCCTTC
T ss_pred ECCeEEEEEECCCCCCcC
Confidence 799999777776665543
No 104
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.39 E-value=4.6e-07 Score=71.05 Aligned_cols=75 Identities=17% Similarity=0.261 Sum_probs=59.6
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCCCCcccEEE
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGENELKQFDI 270 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g~~~~kf~I 270 (295)
..++.+++|| +|.| ++++||+++|. +|| -|+.+.|.. +++..+||+|.|.+.+.....+..-+. ..|
T Consensus 36 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~-~~G--~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g--~~~ 107 (118)
T 2khc_A 36 EGPEGCNLFI---YHLPQEFTDTDLASTFL-PFG--NVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNG--FQV 107 (118)
T ss_dssp CCCCSEEEEE---ECSCTTCCHHHHHHHTT-TSC--EEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCC--CEE
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHH-hcC--CEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCC--CEE
Confidence 4567899999 8988 99999999999 599 466666643 688899999999999998888764222 368
Q ss_pred CCceeEEE
Q 045525 271 HGKDIRVR 278 (295)
Q Consensus 271 ngk~vWar 278 (295)
+|+.+-++
T Consensus 108 ~g~~l~V~ 115 (118)
T 2khc_A 108 GTKRLKVQ 115 (118)
T ss_dssp TTEECCEE
T ss_pred CCEEEEEE
Confidence 89888654
No 105
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.37 E-value=7.2e-07 Score=75.17 Aligned_cols=87 Identities=17% Similarity=0.330 Sum_probs=66.9
Q ss_pred CCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCCCCcccEEECC
Q 045525 198 DTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGENELKQFDIHG 272 (295)
Q Consensus 198 ~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ing 272 (295)
...+++|| +|.| ++++||+++|. +|| . |+.+.+.. +++..+||+|.|.+.+....++..-+. ..|+|
T Consensus 123 ~~~~~l~v---~nlp~~~t~~~l~~~f~-~~G-~-v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g--~~~~g 194 (216)
T 2qfj_A 123 RAFNRIYV---ASVHQDLSDDDIKSVFE-AFG-K-IKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNL--FDLGG 194 (216)
T ss_dssp TTSCEEEE---ECCCTTCCHHHHHHHHT-TSS-C-EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT--CBCSS
T ss_pred CCCcEEEE---eCCCCcCCHHHHHHHHh-ccC-C-eeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccC--CEeCC
Confidence 45689999 8888 99999999998 599 4 55555543 678899999999999987777653222 24899
Q ss_pred ceeEEEecccCCCCCCCCCC
Q 045525 273 KDIRVRRFVPKPAPVASPST 292 (295)
Q Consensus 273 k~vWarky~pk~~~~~~~~~ 292 (295)
+.+-++...|++.+...|..
T Consensus 195 ~~i~V~~a~~~~~~~~~p~~ 214 (216)
T 2qfj_A 195 QYLRVGKAVTPPMPLLTPAT 214 (216)
T ss_dssp SBCEEEECSSCSSTTSCC--
T ss_pred cEEEEEEecCCCCCCCCCCC
Confidence 99999999998777766654
No 106
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.37 E-value=4e-07 Score=68.72 Aligned_cols=81 Identities=21% Similarity=0.239 Sum_probs=63.2
Q ss_pred CCCCceEEEEccCCcc--cCHHHHH----HHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEE
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELF----EFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDI 270 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~----efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~I 270 (295)
++..+++|| +|.| ++++||+ ++|. +|| -|+.+.+-++++..+||+|.|.+.+.....+..-+. ..+
T Consensus 5 ~~~~~~l~V---~nLp~~~~~~~l~~~l~~~f~-~~G--~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~ 76 (97)
T 1nu4_A 5 TRPNHTIYI---NNLNEKIKKDELKKSLHAIFS-RFG--QILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQG--FPF 76 (97)
T ss_dssp -CCCSEEEE---ESCCTTSCHHHHHHHHHHHHG-GGS--CEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTT--CEE
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHHHHH-hCC--CEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCC--CEE
Confidence 456789999 8888 9999999 9998 599 566777755567789999999999987777642111 357
Q ss_pred CCceeEEEecccCCC
Q 045525 271 HGKDIRVRRFVPKPA 285 (295)
Q Consensus 271 ngk~vWarky~pk~~ 285 (295)
+|+.+-++...|++.
T Consensus 77 ~g~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 77 YDKPMRIQYAKTDSD 91 (97)
T ss_dssp TTEECEEEECSSCCT
T ss_pred CCcEEEEEEccCCCc
Confidence 999999988877654
No 107
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.37 E-value=2.9e-06 Score=66.02 Aligned_cols=79 Identities=16% Similarity=0.105 Sum_probs=62.1
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECC--
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHG-- 272 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ing-- 272 (295)
+...+++|| +|.| ++++||+++|. +|| + |+.+.+... .||+|.|.+++.....+..-+ ...|+|
T Consensus 12 ~~~~~~l~V---~nLp~~~t~~~l~~~F~-~~G-~-i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~--g~~~~g~~ 79 (108)
T 1x4c_A 12 RRSENRVVV---SGLPPSGSWQDLKDHMR-EAG-D-VCYADVYRD----GTGVVEFVRKEDMTYAVRKLD--NTKFRSHE 79 (108)
T ss_dssp CSCCCEEEE---ESCCSSCCHHHHHHHHG-GGS-C-EEEEEEETT----TEEEEEESSHHHHHHHHHHSS--SEEEECTT
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHH-hcC-C-EeEEEEecC----CEEEEEECCHHHHHHHHHHHC--cCCccCCc
Confidence 456789999 8988 99999999999 599 5 556666332 899999999998887776422 236788
Q ss_pred ---ceeEEEecccCCCCC
Q 045525 273 ---KDIRVRRFVPKPAPV 287 (295)
Q Consensus 273 ---k~vWarky~pk~~~~ 287 (295)
+.+-++...||++..
T Consensus 80 ~~~~~i~V~~a~~~~~~~ 97 (108)
T 1x4c_A 80 GETAYIRVKVDGPRSPSY 97 (108)
T ss_dssp SCEEEEEEEESSCCSCCC
T ss_pred CcceEEEEEeCCCCCCCC
Confidence 999999998877654
No 108
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.36 E-value=7.1e-07 Score=67.11 Aligned_cols=76 Identities=17% Similarity=0.343 Sum_probs=58.9
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
.+++.+++|| +|.| ++++||+++|.+ || -|+.|.|.. .++..+||+|.|.+++....++..-+ ...++
T Consensus 12 ~~~~~~~l~v---~nlp~~~~~~~l~~~F~~-~G--~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~--g~~~~ 83 (95)
T 2ywk_A 12 QEEADRTVFV---GNLEARVREEILYELFLQ-AG--PLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN--GIRLY 83 (95)
T ss_dssp CTTGGGEEEE---ECCCTTCCHHHHHHHHGG-GS--CEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHT--TCEET
T ss_pred CCCCCCEEEE---ECCCCCCCHHHHHHHHHh-cC--CEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhC--CCEEC
Confidence 3567799999 8988 999999999985 99 456666654 56778999999999999888765311 12588
Q ss_pred CceeEEEe
Q 045525 272 GKDIRVRR 279 (295)
Q Consensus 272 gk~vWark 279 (295)
|+.+-++.
T Consensus 84 g~~l~V~~ 91 (95)
T 2ywk_A 84 GRPINVSG 91 (95)
T ss_dssp TEECEEEC
T ss_pred CCEEEEEE
Confidence 98886654
No 109
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.36 E-value=6.5e-07 Score=73.32 Aligned_cols=86 Identities=13% Similarity=0.132 Sum_probs=66.4
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCce
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGKD 274 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~ 274 (295)
.+..++||| ++.| ++|+||+++|.+ || . |+.|.|-. ..+||+|.|.+++....++...+.....|+|+.
T Consensus 28 ~~ps~~LfV---gNLp~~vte~dL~~lF~~-fG-~-V~~v~i~~---~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~ 98 (119)
T 2ad9_A 28 GVPSRVIHI---RKLPIDVTEGEVISLGLP-FG-K-VTNLLMLK---GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 98 (119)
T ss_dssp SSCCSEEEE---ESCCTTCCHHHHHHHHTT-TS-C-CCEEEEEG---GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBC
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cC-C-EEEEEEeC---CCCEEEEEECCHHHHHHHHHHhccCCceECCeE
Confidence 445789999 8988 999999999994 99 5 45555532 268999999999988777764222345799999
Q ss_pred eEEEecccCCCCCCCCC
Q 045525 275 IRVRRFVPKPAPVASPS 291 (295)
Q Consensus 275 vWarky~pk~~~~~~~~ 291 (295)
+.+....+|+.++.+..
T Consensus 99 l~V~~a~~k~~~~~~~~ 115 (119)
T 2ad9_A 99 IYIQFSNHKELKTDSSP 115 (119)
T ss_dssp CEEEECSSSSCCCCCCT
T ss_pred EEEEEccCCCCCccccc
Confidence 99999988887775543
No 110
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.36 E-value=9.4e-07 Score=67.14 Aligned_cols=78 Identities=21% Similarity=0.207 Sum_probs=61.2
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEEC--C
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIH--G 272 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~In--g 272 (295)
+...+++|| +|.| ++++||+++|. +|| .|+.+.|.. ...||+|.|.+++....++..-+. ..|+ |
T Consensus 14 ~~~~~~l~V---~nlp~~~t~~~l~~~F~-~~G--~v~~v~~~~---~~g~afV~f~~~~~A~~A~~~l~g--~~~~~~g 82 (97)
T 1why_A 14 ANPTTRLWV---GGLGPNTSLAALAREFD-RFG--SIRTIDHVK---GDSFAYIQYESLDAAQAACAKMRG--FPLGGPD 82 (97)
T ss_dssp CCCCSCEEE---ECCCSSCCHHHHHHHHH-TTS--CEEEEEECS---SSCCEEEEESSHHHHHHHHHHHTT--CBCSSSS
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHH-hcC--CeeEEEEeC---CCCEEEEEECCHHHHHHHHHHHCC--CEeCCCC
Confidence 455689999 7888 99999999999 599 577777743 267999999999988777653222 2467 9
Q ss_pred ceeEEEecccCCC
Q 045525 273 KDIRVRRFVPKPA 285 (295)
Q Consensus 273 k~vWarky~pk~~ 285 (295)
+.+.++...|++.
T Consensus 83 ~~l~V~~a~~~~~ 95 (97)
T 1why_A 83 RRLRVDFAKSGPS 95 (97)
T ss_dssp CBCEEEECCCCCC
T ss_pred cEEEEEECCCCCC
Confidence 9999998888754
No 111
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.36 E-value=1e-06 Score=73.20 Aligned_cols=83 Identities=19% Similarity=0.295 Sum_probs=62.3
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEee-c--cCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMG-C--CRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~-~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
....+++|| +|.| ++++||+++|. .|| . |+.+.+. + +++..+||+|.|.+.+....+|... ...++
T Consensus 101 ~~~~~~l~V---~nLp~~~t~~~l~~~F~-~~G-~-i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~---~~~~~ 171 (196)
T 1l3k_A 101 HLTVKKIFV---GGIKEDTEEHHLRDYFE-QYG-K-IEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQK---YHTVN 171 (196)
T ss_dssp --CCSEEEE---ECCTTTCCHHHHHHHHT-TTS-C-EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCS---CCEET
T ss_pred CCCcceEEE---eCCCCCCCHHHHHHHHh-cCC-C-eEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhC---CcEEC
Confidence 345689999 8988 99999999998 599 4 5555544 3 6788999999999999999888742 34899
Q ss_pred CceeEEEecccCCCCCC
Q 045525 272 GKDIRVRRFVPKPAPVA 288 (295)
Q Consensus 272 gk~vWarky~pk~~~~~ 288 (295)
|+.+.++...||.....
T Consensus 172 G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 172 GHNCEVRKALSKQEMAS 188 (196)
T ss_dssp TEECEEEECC-------
T ss_pred CEEEEEEecCChhHhcc
Confidence 99999999999977654
No 112
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.35 E-value=5e-07 Score=72.87 Aligned_cols=85 Identities=16% Similarity=0.176 Sum_probs=62.5
Q ss_pred CCCCCCceEEEEccCCcccCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCce
Q 045525 195 NDADTDRTLFATFSKGHPISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGKD 274 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~Pvse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~ 274 (295)
..+.+.+++|| +|+.++++||+++|. +|| + |+.|.| .+..+||+|.|.+.+.....+..-+. ..|+|+.
T Consensus 34 ~~~~~~~~lfV---gnl~~te~~L~~~F~-~~G-~-I~~v~i---~~~kg~aFV~f~~~~~A~~Ai~~lng--~~~~g~~ 102 (121)
T 2bz2_A 34 RAPRKGNTLYV---YGEDMTPTLLRGAFS-PFG-N-IIDLSM---DPPRNCAFVTYEKMESADQAVAELNG--TQVESVQ 102 (121)
T ss_dssp -CCCCCCEEEE---ECSSCCHHHHHHHHS-TTC-C-CSCEEE---ETTTTEEEEECSSHHHHHHHHHHHTT--CBCSSCB
T ss_pred CCCCCCCEEEE---cCCCCCHHHHHHHHH-ccC-C-EEEEEE---eCCCCEEEEEECCHHHHHHHHHHhCC--CEECCeE
Confidence 34567899999 678999999999999 599 4 566666 36778999999999988777643111 2469999
Q ss_pred eEEEecccCCCCCCCC
Q 045525 275 IRVRRFVPKPAPVASP 290 (295)
Q Consensus 275 vWarky~pk~~~~~~~ 290 (295)
+-+....|++.....+
T Consensus 103 l~V~~a~~~~~~~~~~ 118 (121)
T 2bz2_A 103 LKVNIARKQPMLDAAT 118 (121)
T ss_dssp CEEEECCSSCC-----
T ss_pred EEEEEeCCCCCCCCCC
Confidence 9999888876655433
No 113
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.35 E-value=2e-06 Score=68.73 Aligned_cols=77 Identities=23% Similarity=0.381 Sum_probs=61.5
Q ss_pred CCCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCCCCcccEE
Q 045525 195 NDADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGENELKQFD 269 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g~~~~kf~ 269 (295)
..+.+.+++|| +|.| ++++||+++|. +|| . |+.|.+-. +++..+||+|.|.+++....++..-+ ...
T Consensus 58 ~~~~~~~~l~v---~nlp~~~~~~~l~~~f~-~~G-~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--g~~ 129 (140)
T 2ku7_A 58 GSATTKRVLYV---GGLAEEVDDKVLHAAFI-PFG-D-ITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN--ESE 129 (140)
T ss_dssp SSCSSCCEEEE---ECCCTTCCHHHHHHHHG-GGS-C-EEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHST--EEE
T ss_pred CCCCCCcEEEE---EeCCCCCCHHHHHHHHH-hcC-C-EEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhC--CCE
Confidence 44667899999 8998 99999999998 599 4 55666543 68889999999999999988886432 246
Q ss_pred ECCceeEEEe
Q 045525 270 IHGKDIRVRR 279 (295)
Q Consensus 270 Ingk~vWark 279 (295)
|+|+.+-++.
T Consensus 130 ~~g~~l~v~~ 139 (140)
T 2ku7_A 130 LFGRTIRVNL 139 (140)
T ss_dssp ETTEEEEEEC
T ss_pred ECCEEEEEEe
Confidence 8899987653
No 114
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.35 E-value=5.6e-07 Score=73.54 Aligned_cols=79 Identities=16% Similarity=0.113 Sum_probs=63.5
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCc---eeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEE
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDC---VEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFD 269 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~c---ve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~ 269 (295)
.++.+++|| +|.| +|++||++||.. || .+ |+.|.|-. ++++.+||+|.|.+++..+..|.. + .-.
T Consensus 20 ~~~~~~v~V---~nLp~~~te~dl~~~F~~-~g-~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~--~~~ 91 (123)
T 2dha_A 20 KENQVIVRM---RGLPFTATAEEVVAFFGQ-HC-PITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-H--KDL 91 (123)
T ss_dssp CCSCCEEEE---CSCCTTCCHHHHHHHHHT-TS-CCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-T--TEE
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-hC-CccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-C--CCe
Confidence 456789999 9999 999999999995 99 54 45665543 788999999999999999999975 2 247
Q ss_pred ECCceeEEEecccC
Q 045525 270 IHGKDIRVRRFVPK 283 (295)
Q Consensus 270 Ingk~vWarky~pk 283 (295)
|+|+.|.+.+..|+
T Consensus 92 l~gR~i~V~~a~~~ 105 (123)
T 2dha_A 92 LGKRYIELFRSTAA 105 (123)
T ss_dssp SSSCEECCEEECHH
T ss_pred eCCeEEEEEECCHH
Confidence 89998877766544
No 115
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.34 E-value=5.9e-07 Score=67.85 Aligned_cols=81 Identities=22% Similarity=0.167 Sum_probs=65.3
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCc
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGK 273 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk 273 (295)
..++.+++|| +|.| ++++||+++|.+ || + |..+ ..+++..+||+|.|.+++.....+..-+. ..|+|+
T Consensus 12 ~~~~~~~l~V---~nL~~~~t~~~l~~~F~~-~g-~-v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~ 81 (96)
T 1fjc_A 12 KVRAARTLLA---KNLSFNITEDELKEVFED-AL-E-IRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQG--AEIDGR 81 (96)
T ss_dssp TTTGGGEEEE---ESCCSSCCHHHHHHHHCS-EE-E-ECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTE--EEETTE
T ss_pred cCCCCCEEEE---eCCCCCCCHHHHHHHHhh-CC-c-EEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCC--CEECCe
Confidence 3456799999 8988 999999999995 99 4 3444 33788899999999999999888875332 578999
Q ss_pred eeEEEecccCCCC
Q 045525 274 DIRVRRFVPKPAP 286 (295)
Q Consensus 274 ~vWarky~pk~~~ 286 (295)
.+-++...||+..
T Consensus 82 ~l~v~~a~~~~~~ 94 (96)
T 1fjc_A 82 SVSLYYTGEKGGT 94 (96)
T ss_dssp EEEEEECSSSCCC
T ss_pred EEEEEEcCCCCCC
Confidence 9999988887653
No 116
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.33 E-value=9.3e-07 Score=71.56 Aligned_cols=77 Identities=19% Similarity=0.332 Sum_probs=63.8
Q ss_pred CCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEee-c--cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCc
Q 045525 199 TDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMG-C--CRDQSLYARVIVRSPAYITLILGENELKQFDIHGK 273 (295)
Q Consensus 199 d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~-~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk 273 (295)
..+++|| +|.| ++++||+++|. +|| + |+.+.+. + ++++.+||+|.|.+++....++.- ....++|+
T Consensus 86 ~~~~l~V---~nlp~~~t~~~l~~~F~-~~G-~-i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~---~~~~~~g~ 156 (167)
T 2cjk_A 86 KTGKIFV---GGIGPDVRPKEFEEFFS-QWG-T-IIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQN---KFIDFKDR 156 (167)
T ss_dssp HCEEEEE---EEECTTCCHHHHHHHHH-TTS-C-CSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHC---SEECSSSS
T ss_pred CCCeEEE---CCCCCCCCHHHHHHHHH-hCc-c-EEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhC---CCEEeCCe
Confidence 4578999 8888 99999999999 599 4 5555544 3 688899999999999999999872 35678999
Q ss_pred eeEEEecccCC
Q 045525 274 DIRVRRFVPKP 284 (295)
Q Consensus 274 ~vWarky~pk~ 284 (295)
.+.++...||.
T Consensus 157 ~i~V~~a~pk~ 167 (167)
T 2cjk_A 157 KIEIKRAEPRH 167 (167)
T ss_dssp CEEEEECCCCC
T ss_pred EEEEeecCCCC
Confidence 99999998873
No 117
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.33 E-value=1.2e-06 Score=66.72 Aligned_cols=78 Identities=15% Similarity=0.202 Sum_probs=58.2
Q ss_pred CCCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeE-------EEe-ec--cCCCCceEEEEecCHHHHHHHhCC
Q 045525 195 NDADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVED-------IKM-GC--CRDQSLYARVIVRSPAYITLILGE 262 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~-------v~M-~~--~~~qplfarivf~s~~~v~~vL~g 262 (295)
..+...+++|| +|.| ++++||+++|. +|| .+.+. +.+ .+ +++..+||+|.|.+.+.....+..
T Consensus 8 ~~~~~~~~l~V---~nLp~~~t~~~l~~~F~-~~G-~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~ 82 (99)
T 2la6_A 8 HSHSDNNTIFV---QGLGENVTIESVADYFK-QIG-IIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDW 82 (99)
T ss_dssp CSCCCCSEEEE---ECCCSSCCHHHHHHHHT-TTS-CBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHH
T ss_pred CCCCCCCEEEE---eCCCCCCCHHHHHHHHH-HhC-CEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 34667789999 8999 99999999999 599 55430 333 22 688899999999999988777642
Q ss_pred CCcccEEECCceeEEEe
Q 045525 263 NELKQFDIHGKDIRVRR 279 (295)
Q Consensus 263 ~~~~kf~Ingk~vWark 279 (295)
-+. ..++|+.+-++.
T Consensus 83 l~g--~~~~g~~l~V~~ 97 (99)
T 2la6_A 83 FDG--KEFSGNPIKVSF 97 (99)
T ss_dssp HTT--CBSSSSBCEEEE
T ss_pred hCC--CEeCCcEEEEEe
Confidence 111 157899887664
No 118
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.32 E-value=1.1e-06 Score=70.10 Aligned_cols=80 Identities=18% Similarity=0.106 Sum_probs=63.3
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCC--ceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEE
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGED--CVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFD 269 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~--cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~ 269 (295)
.+.+.+|+|| +|.| +|++||++||.. || . .|+.|.|-. .+++.+||+|.|.+++..+.+|. .+ ...
T Consensus 13 ~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G-~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~--g~~ 84 (118)
T 2db1_A 13 EGGEGYVVKL---RGLPWSCSIEDVQNFLSD-CT-IHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KD--RES 84 (118)
T ss_dssp CBCCCCEEEE---ESCCTTCCHHHHHHHTTT-SC-BTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GT--TEE
T ss_pred CCCCCcEEEE---eCCCCCCCHHHHHHHHHH-cC-CccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cC--CCe
Confidence 3567789999 8999 999999999995 99 4 255555543 67889999999999999999988 33 357
Q ss_pred ECCceeEEEecccC
Q 045525 270 IHGKDIRVRRFVPK 283 (295)
Q Consensus 270 Ingk~vWarky~pk 283 (295)
|+|+.|-+....++
T Consensus 85 ~~gr~i~V~~a~~~ 98 (118)
T 2db1_A 85 MGHRYIEVFKSHRT 98 (118)
T ss_dssp ETTEEEEEEEECHH
T ss_pred ECCeEEEEEECCHH
Confidence 89999887765433
No 119
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.32 E-value=7.1e-07 Score=69.69 Aligned_cols=84 Identities=8% Similarity=0.042 Sum_probs=65.2
Q ss_pred CCCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec-cCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 195 NDADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC-CRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~-~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
..+.+.+++|| +|.| +||+||++||.. || .. +-.++.+ ++++.+||+|.|.+++..+..|. . ....|+
T Consensus 10 ~~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G-~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~--~~~~~~ 80 (102)
T 1wez_A 10 FQSTTGHCVHM---RGLPYRATENDIYNFFSP-LN-PM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-K--DKANMQ 80 (102)
T ss_dssp CCCSSSCEEEE---ESCCTTCCHHHHHHSSCS-CC-CS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-T--SSCCSS
T ss_pred CCCCCCCEEEE---eCCCCCCCHHHHHHHHHH-cC-ce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-h--CCCeEC
Confidence 34677899999 8999 999999999995 99 43 3333333 78889999999999999999884 2 234789
Q ss_pred CceeEEEecccCCCCC
Q 045525 272 GKDIRVRRFVPKPAPV 287 (295)
Q Consensus 272 gk~vWarky~pk~~~~ 287 (295)
|+.|-+....++....
T Consensus 81 gr~i~V~~~~~~~~~~ 96 (102)
T 1wez_A 81 HRYVELFLNSTAGTSG 96 (102)
T ss_dssp SSCCEEEEECCCCCCC
T ss_pred CcEEEEEECCCCCCCC
Confidence 9999888776665443
No 120
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.32 E-value=1.4e-06 Score=70.47 Aligned_cols=80 Identities=16% Similarity=0.177 Sum_probs=62.3
Q ss_pred CCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEee-c--cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCc
Q 045525 199 TDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMG-C--CRDQSLYARVIVRSPAYITLILGENELKQFDIHGK 273 (295)
Q Consensus 199 d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~-~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk 273 (295)
..+|+|| +|.| ++++||+++|.+ || + |+.+.+- + ++++.+||+|.|.+++....++..-+ ...++|+
T Consensus 2 ~~~~l~v---~nlp~~~~~~~l~~~f~~-~G-~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~--~~~~~g~ 73 (168)
T 1b7f_A 2 SNTNLIV---NYLPQDMTDRELYALFRA-IG-P-INTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLN--GITVRNK 73 (168)
T ss_dssp CCSEEEE---ECCCTTCCHHHHHHHHHT-TS-C-EEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT--TCEETTE
T ss_pred CccEEEE---eCCCCCCCHHHHHHHHHh-cC-C-eeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcC--CCEeCCc
Confidence 3589999 8999 999999999995 99 5 5555543 3 67888999999999999888775211 1267999
Q ss_pred eeEEEecccCCCC
Q 045525 274 DIRVRRFVPKPAP 286 (295)
Q Consensus 274 ~vWarky~pk~~~ 286 (295)
.+-++...|+...
T Consensus 74 ~l~v~~~~~~~~~ 86 (168)
T 1b7f_A 74 RLKVSYARPGGES 86 (168)
T ss_dssp ECEEEECCCCSST
T ss_pred EEEEEecCCCccc
Confidence 9988877776543
No 121
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.32 E-value=1.1e-06 Score=73.38 Aligned_cols=84 Identities=19% Similarity=0.159 Sum_probs=62.0
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEee-c--cCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMG-C--CRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~-~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
..+.++||| +|.| +++++|+++|. +|| . |+.|.|. + ++...+||+|.|.+.+....++..-+. ..|+
T Consensus 69 ~~~~~~l~V---~nLp~~~t~~~L~~~F~-~~G-~-i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~ 140 (165)
T 1rk8_A 69 SVEGWILFV---TSIHEEAQEDEIQEKFC-DYG-E-IKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG--AEIM 140 (165)
T ss_dssp CC-CEEEEE---ESCCTTCCHHHHHHHHG-GGS-C-EEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTT--CEET
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHhh-cCC-C-EEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCC--CEEC
Confidence 445689999 8988 99999999998 599 5 4555554 3 788899999999999987777653111 3689
Q ss_pred CceeEEEecccCCCCCC
Q 045525 272 GKDIRVRRFVPKPAPVA 288 (295)
Q Consensus 272 gk~vWarky~pk~~~~~ 288 (295)
|+.+-+....|+.++..
T Consensus 141 g~~l~V~~a~~~~~~~~ 157 (165)
T 1rk8_A 141 GQTIQVDWCFVKGPKRV 157 (165)
T ss_dssp TEECEEEESEECC----
T ss_pred CEEEEEEEecCCCCCCC
Confidence 99998888877766543
No 122
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.32 E-value=5.2e-07 Score=70.32 Aligned_cols=78 Identities=17% Similarity=0.173 Sum_probs=60.2
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEe-ec--cCCCCceEEEEecCHHHHHHHhC---CCCcccE
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKM-GC--CRDQSLYARVIVRSPAYITLILG---ENELKQF 268 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M-~~--~~~qplfarivf~s~~~v~~vL~---g~~~~kf 268 (295)
.++-.|||| +|.| +|+++|+++|. +||.--+..|.+ .+ ++++.+||+|.|.+++....++. |. ...+
T Consensus 6 ~~~m~tlfV---~nL~~~~tee~L~~~F~-~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~-~~~~ 80 (95)
T 2lkz_A 6 HHHMDTIIL---RNIAPHTVVDSIMTALS-PYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSL-HPPL 80 (95)
T ss_dssp SCCCCEEEE---ESCCTTCCHHHHHHHST-TTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSS-SSCE
T ss_pred CCccCEEEE---eCCCCcCCHHHHHHHHH-hhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCC-CCCc
Confidence 345569999 9999 99999999999 599213555554 33 78999999999999988777765 43 3568
Q ss_pred EECCceeEEEe
Q 045525 269 DIHGKDIRVRR 279 (295)
Q Consensus 269 ~Ingk~vWark 279 (295)
.|+||.+-+..
T Consensus 81 ~i~Gr~i~V~~ 91 (95)
T 2lkz_A 81 KIDGKTIGVDF 91 (95)
T ss_dssp EETTEEEEEEE
T ss_pred eECCEEEEEEE
Confidence 99999996654
No 123
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.32 E-value=1.2e-06 Score=68.94 Aligned_cols=80 Identities=16% Similarity=0.180 Sum_probs=60.9
Q ss_pred CCCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECC
Q 045525 195 NDADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHG 272 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ing 272 (295)
..+.+.+++|| +|.| ++++||+++|. +|| -|+.+.|. .+||+|.|.+.+....++..-+. ..++|
T Consensus 26 ~~~~~~~~l~V---~nLp~~~t~~~L~~~F~-~~G--~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g--~~~~g 92 (108)
T 2jvo_A 26 EGELSNTRLFV---RPFPLDVQESELNEIFG-PFG--PMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHG--KSFAN 92 (108)
T ss_dssp --CCSCSEEEE---CSSCTTCCHHHHHHHHT-TTS--CCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTT--CEETT
T ss_pred CCCCCCCEEEE---ECCCCCCCHHHHHHHHH-hcC--CEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCC--CEECC
Confidence 34567799999 8998 99999999998 499 56777774 68999999999998777653111 25799
Q ss_pred ceeEEEecccCCCCC
Q 045525 273 KDIRVRRFVPKPAPV 287 (295)
Q Consensus 273 k~vWarky~pk~~~~ 287 (295)
+.+-++...|++++.
T Consensus 93 ~~l~V~~a~~~~~r~ 107 (108)
T 2jvo_A 93 QPLEVVYSKLPAKRY 107 (108)
T ss_dssp EECEEESCSCCC---
T ss_pred eEEEEEEecCCCCCC
Confidence 999998888776653
No 124
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.32 E-value=1e-06 Score=63.65 Aligned_cols=69 Identities=14% Similarity=0.297 Sum_probs=54.4
Q ss_pred eEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCceeE
Q 045525 202 TLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGENELKQFDIHGKDIR 276 (295)
Q Consensus 202 t~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~vW 276 (295)
++|| +|.| ++++|++++|.+ || . |+.+.+.. ++++.+||+|.|.+++..+.++. .+ ...|+|+.+-
T Consensus 1 ~l~v---~nlp~~~t~~~l~~~F~~-~G-~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~--~~~~~g~~l~ 71 (75)
T 2mss_A 1 KIFV---GGLSVNTTVEDVKHYFEQ-FG-K-VDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IH--FHEINNKMVE 71 (75)
T ss_dssp CEEE---ECCCSSCCHHHHHHHHHT-TS-C-CSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SS--CCCSSSCCCE
T ss_pred CEEE---ecCCCCCCHHHHHHHHHh-cC-C-EEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CC--CCEECCEEEE
Confidence 3566 8888 999999999995 99 4 55555543 68889999999999999999987 22 2357899887
Q ss_pred EEe
Q 045525 277 VRR 279 (295)
Q Consensus 277 ark 279 (295)
++.
T Consensus 72 v~~ 74 (75)
T 2mss_A 72 CKK 74 (75)
T ss_dssp EEC
T ss_pred EEe
Confidence 764
No 125
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.31 E-value=8.7e-07 Score=70.39 Aligned_cols=80 Identities=13% Similarity=0.083 Sum_probs=60.3
Q ss_pred CCCCceEEEEccCCccc---CHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCc
Q 045525 197 ADTDRTLFATFSKGHPI---SRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGK 273 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~Pv---se~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk 273 (295)
++..++||| ++.|- +|+||+++|. .|| . |..|.|- ..+.||+|.|.+++....++..-+.....|+||
T Consensus 12 ~~p~~~l~V---~nLp~~~~te~dL~~lF~-~fG-~-V~~v~i~---~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr 82 (102)
T 1x4d_A 12 VETRRVVHI---MDFQRGKNLRYQLLQLVE-PFG-V-ISNHLIL---NKINEAFIEMATTEDAQAAVDYYTTTPALVFGK 82 (102)
T ss_dssp CCCCCEEEE---ESCCCSSSHHHHHHTTTG-GGS-C-EEEEEEC---SSSSCEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred CCCCCEEEE---eCCCCCcCCHHHHHHHHH-hcC-C-EEEEEEE---cCCCEEEEEECCHHHHHHHHHHHcCCCceECCc
Confidence 456799999 88885 9999999999 599 4 5555552 235799999999988777776433334579999
Q ss_pred eeEEEecccCCC
Q 045525 274 DIRVRRFVPKPA 285 (295)
Q Consensus 274 ~vWarky~pk~~ 285 (295)
.+.+....+++.
T Consensus 83 ~l~V~~a~~~~~ 94 (102)
T 1x4d_A 83 PVRVHLSQKYKR 94 (102)
T ss_dssp ECEEEEECCCTT
T ss_pred EEEEEECCCCCC
Confidence 998776665443
No 126
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.30 E-value=8.4e-07 Score=67.75 Aligned_cols=76 Identities=14% Similarity=0.218 Sum_probs=58.3
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCce
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGKD 274 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~ 274 (295)
+.+.+++|| +|.| ++++||+++|.+ || -|+.+.|. +..+||+|.|.+.+....++..-+ ...++|+.
T Consensus 24 ~~~~~~l~V---~nlp~~~~~~~l~~~f~~-~G--~i~~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~--g~~~~g~~ 92 (101)
T 2la4_A 24 PPRVTTAYI---GNIPHFATEADLIPLFQN-FG--FILDFKHY---PEKGCCFIKYDTHEQAAVCIVALA--NFPFQGRN 92 (101)
T ss_dssp CSSCCEEEE---ESCCTTCCHHHHHHHHHT-TS--CCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHT--TCEETTEE
T ss_pred CCCCCEEEE---cCCCcccCHHHHHHHHHh-CC--CEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhC--CCeECCeE
Confidence 456789999 8988 999999999994 99 56777773 567999999999998777664211 23688998
Q ss_pred eEEEecccC
Q 045525 275 IRVRRFVPK 283 (295)
Q Consensus 275 vWarky~pk 283 (295)
+-++...||
T Consensus 93 l~V~~a~~~ 101 (101)
T 2la4_A 93 LRTGWGKER 101 (101)
T ss_dssp CCCCBCCCC
T ss_pred EEEEeccCC
Confidence 866655443
No 127
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.30 E-value=2.6e-06 Score=66.09 Aligned_cols=80 Identities=14% Similarity=0.174 Sum_probs=61.5
Q ss_pred CCCceEEEEccCCcc--c------CHHHHHHHHHHhhCCCceeEEEeec-cCCCCceEEEEecCHHHHHHHhCCCCcccE
Q 045525 198 DTDRTLFATFSKGHP--I------SRAELFEFFIRRYGEDCVEDIKMGC-CRDQSLYARVIVRSPAYITLILGENELKQF 268 (295)
Q Consensus 198 ~d~Rt~FvTFS~G~P--v------se~Ei~efF~~~yG~~cve~v~M~~-~~~qplfarivf~s~~~v~~vL~g~~~~kf 268 (295)
...+++|| +|.| + ++++|+++|. +|| . |+.+.|-+ ++++.+||+|.|.+++.....+..-+. .
T Consensus 13 ~~~~~l~V---~nLp~~~~~~~~~t~~~l~~~F~-~~G-~-v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g--~ 84 (105)
T 2nlw_A 13 GIDSVIVV---DNVPQVGPDRLEKLKNVIHKIFS-KFG-K-ITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADG--Y 84 (105)
T ss_dssp SCCSEEEE---ESCCCCCTTTTTHHHHHHHHHHG-GGS-C-EEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSS--E
T ss_pred CCCCEEEE---eCCCcchhhhhHHHHHHHHHHHh-cCC-C-EEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCC--c
Confidence 34689999 8998 5 5799999998 599 4 66666655 788999999999999988877664222 4
Q ss_pred EECCc-eeEEEecccCCC
Q 045525 269 DIHGK-DIRVRRFVPKPA 285 (295)
Q Consensus 269 ~Ingk-~vWarky~pk~~ 285 (295)
.++|+ .+-+..+.+..+
T Consensus 85 ~~~g~~~l~V~~a~~~~k 102 (105)
T 2nlw_A 85 KLDKQHTFRVNLFTDFDK 102 (105)
T ss_dssp ECSTTCEEEEECSCCCCC
T ss_pred ccCCCceEEEEEcchHhh
Confidence 68999 788877765544
No 128
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.30 E-value=7.9e-07 Score=72.89 Aligned_cols=83 Identities=16% Similarity=0.111 Sum_probs=67.2
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
-+.+.+++|| +|.| ++++||+++|.+ || .... +.+.+ ++++.+||+|.|.+++..+..|. .....|+
T Consensus 9 ~~~~~~~l~V---~nLp~~~t~~~l~~~f~~-~g-~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~---l~g~~~~ 79 (175)
T 1fje_B 9 ESTTPFNLFI---GNLNPNKSVAELKVAISE-LF-AKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE---LTGLKVF 79 (175)
T ss_dssp SCSSSEEEEE---ECCCTTSCHHHHHHHHHH-HH-HHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH---GGGEEET
T ss_pred CCCCCcEEEE---eCCCCCCCHHHHHHHHHH-hC-Ccce-EEEEECCCCccccEEEEEECCHHHHHHHHh---cCCCEeC
Confidence 4678899999 8999 899999999995 88 4333 33333 78899999999999999888883 4456889
Q ss_pred CceeEEEecccCCCCC
Q 045525 272 GKDIRVRRFVPKPAPV 287 (295)
Q Consensus 272 gk~vWarky~pk~~~~ 287 (295)
|+.+.++...+++...
T Consensus 80 g~~l~v~~~~~~~~~~ 95 (175)
T 1fje_B 80 GNEIKLEKPKGRDSKK 95 (175)
T ss_dssp TEEEEEECCCCSSCST
T ss_pred CeEEEEecCCCccccc
Confidence 9999999888776543
No 129
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.28 E-value=1.3e-06 Score=64.33 Aligned_cols=66 Identities=12% Similarity=0.130 Sum_probs=52.0
Q ss_pred CceEEEEccCCcc--c------CHHHHHHHHHHhhCCCceeEEEeec-cCCCCceEEEEecCHHHHHHHhCCCCcccEEE
Q 045525 200 DRTLFATFSKGHP--I------SRAELFEFFIRRYGEDCVEDIKMGC-CRDQSLYARVIVRSPAYITLILGENELKQFDI 270 (295)
Q Consensus 200 ~Rt~FvTFS~G~P--v------se~Ei~efF~~~yG~~cve~v~M~~-~~~qplfarivf~s~~~v~~vL~g~~~~kf~I 270 (295)
++|+|| +|.| + ++++++++|. +|| + |+.+.|-+ ++++.+||+|.|.+++.....+..-+.. .+
T Consensus 1 ~~~l~V---~nLp~~~~~~~~~t~~~l~~~F~-~~G-~-i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~--~~ 72 (81)
T 2krb_A 1 DSVIVV---DNVPQVGPDRLEKLKNVIHKIFS-KFG-K-ITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGY--KL 72 (81)
T ss_dssp CCEEEE---ESCCCCCTTTHHHHHHHHHHHHH-TTC-C-EEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSC--CC
T ss_pred CCEEEE---eCCCCCcHHHHHHHHHHHHHHHh-hcC-C-eEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCc--cc
Confidence 478988 8888 5 5699999998 599 4 66666655 7889999999999999988888753322 46
Q ss_pred CCc
Q 045525 271 HGK 273 (295)
Q Consensus 271 ngk 273 (295)
+|+
T Consensus 73 ~g~ 75 (81)
T 2krb_A 73 DKQ 75 (81)
T ss_dssp SSS
T ss_pred CCc
Confidence 777
No 130
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.28 E-value=4.8e-07 Score=69.90 Aligned_cols=76 Identities=13% Similarity=0.147 Sum_probs=60.3
Q ss_pred CCceEEEEccCCccc--------CHHHHHHHHHHhhCCCceeEEEee-c--cCCCCceEEEEecCHHHHHHHh---CCCC
Q 045525 199 TDRTLFATFSKGHPI--------SRAELFEFFIRRYGEDCVEDIKMG-C--CRDQSLYARVIVRSPAYITLIL---GENE 264 (295)
Q Consensus 199 d~Rt~FvTFS~G~Pv--------se~Ei~efF~~~yG~~cve~v~M~-~--~~~qplfarivf~s~~~v~~vL---~g~~ 264 (295)
.++|+|| +|.|. ++++|+++|. +|| -|+.+.|- + ++++.+||+|.|.+++.....+ +|.
T Consensus 5 ~~~~vfV---~nLp~v~~~~~~~~~~~L~~~F~-~~G--~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~- 77 (100)
T 3ns6_A 5 SDQYIVV---NGAPVIPSAKVPVLKKALTSLFS-KAG--KVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGK- 77 (100)
T ss_dssp GGGEEEE---ESCCCCBGGGHHHHHHHHHHHHH-TTS--CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC-
T ss_pred cCcEEEE---eCCCcCChHHHHHHHHHHHHHHH-hcC--CEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCc-
Confidence 3689999 88886 7899999999 599 45555554 3 6889999999999988877665 553
Q ss_pred cccEEECC-ceeEEEecccCCC
Q 045525 265 LKQFDIHG-KDIRVRRFVPKPA 285 (295)
Q Consensus 265 ~~kf~Ing-k~vWarky~pk~~ 285 (295)
.++| +.+-++.+.|+.+
T Consensus 78 ----~~~g~r~l~V~~a~~~~~ 95 (100)
T 3ns6_A 78 ----RLDLKHRLFLYTMKDVER 95 (100)
T ss_dssp ----BSSSSCBCEEEESHHHHH
T ss_pred ----ccCCCeEEEEEECchhhh
Confidence 5888 9999999888643
No 131
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.28 E-value=2.8e-06 Score=66.04 Aligned_cols=77 Identities=12% Similarity=0.154 Sum_probs=59.7
Q ss_pred CCCCceEEEEccCCcc---cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCc
Q 045525 197 ADTDRTLFATFSKGHP---ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGK 273 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P---vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk 273 (295)
....+++|| +|.| ++++||+++|. +|| -|+.+.| ...||+|.|.+++..+.++..-+ ...|+|+
T Consensus 24 ~~~~~~l~V---~nl~~~~~t~~~l~~~F~-~~G--~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~--g~~~~g~ 90 (110)
T 1wf1_A 24 KSINSRVFI---GNLNTALVKKSDVETIFS-KYG--RVAGCSV-----HKGYAFVQYSNERHARAAVLGEN--GRVLAGQ 90 (110)
T ss_dssp TTCSSEEEE---CSCCCSSCCHHHHHHHHG-GGS--CCSEEEE-----ETTEEEEECSSSHHHHHHHHHHT--TCEETTE
T ss_pred CCCCcEEEE---eCCCcccCCHHHHHHHHH-hCC--CeEEEEE-----eCCEEEEEECCHHHHHHHHHHcC--CCEECCe
Confidence 445689999 8888 79999999999 599 5667777 46899999999998887774211 1368999
Q ss_pred eeEEEecccCCCC
Q 045525 274 DIRVRRFVPKPAP 286 (295)
Q Consensus 274 ~vWarky~pk~~~ 286 (295)
.+-++...++++.
T Consensus 91 ~l~V~~a~~~~~~ 103 (110)
T 1wf1_A 91 TLDINMAGEPKPD 103 (110)
T ss_dssp ECCEEESCCCCSC
T ss_pred EEEEEECCCCCCC
Confidence 9988887754443
No 132
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=97.60 E-value=1e-07 Score=74.97 Aligned_cols=85 Identities=14% Similarity=0.142 Sum_probs=65.8
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeE-------EEee-c--cCCCCceEEEEecCHHHHHHHhCCCC
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVED-------IKMG-C--CRDQSLYARVIVRSPAYITLILGENE 264 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~-------v~M~-~--~~~qplfarivf~s~~~v~~vL~g~~ 264 (295)
..+.+++|| +|.| ++++||+++|.+ || .+.+. +.+. + +++..+||+|.|.+.+....++..-+
T Consensus 4 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G-~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 78 (116)
T 2lcw_A 4 NSDNNTIFV---QGLGENVTIESVADYFKQ-IG-IIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 78 (116)
Confidence 356789999 8998 999999999995 99 55430 3332 2 68889999999999999888876433
Q ss_pred cccEEECCceeEEEecccCCCCCC
Q 045525 265 LKQFDIHGKDIRVRRFVPKPAPVA 288 (295)
Q Consensus 265 ~~kf~Ingk~vWarky~pk~~~~~ 288 (295)
. ..++|+.+-++...||+....
T Consensus 79 g--~~~~g~~l~V~~a~~~~~~~~ 100 (116)
T 2lcw_A 79 G--KEFSGNPIKVSFATRRADFNR 100 (116)
Confidence 2 467899999988888876643
No 133
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.27 E-value=6.7e-07 Score=69.74 Aligned_cols=81 Identities=14% Similarity=0.095 Sum_probs=64.6
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCc--eeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEE
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDC--VEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFD 269 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~c--ve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~ 269 (295)
.+.+.+++|| +|.| +|++||++||. .|| .. |+.|.+-. .++..+||+|.|.+++.....|. .+. ..
T Consensus 7 ~~~~~~~l~V---~nLp~~~te~~l~~~F~-~~g-~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~--~~ 78 (107)
T 2lmi_A 7 EVDDVFLIRA---QGLPWSCTMEDVLNFFS-DCR-IRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHR--MY 78 (107)
T ss_dssp CCSSCCEEEE---ECCCSSCCSHHHHHHTT-TSC-BTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTT--CC
T ss_pred CCCCccEEEE---eCCCCCCCHHHHHHHHH-hcC-CcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCc--ce
Confidence 3567788998 8999 99999999999 488 32 56665544 68889999999999999999988 333 35
Q ss_pred ECCceeEEEecccCC
Q 045525 270 IHGKDIRVRRFVPKP 284 (295)
Q Consensus 270 Ingk~vWarky~pk~ 284 (295)
|+|+.+.+....|+.
T Consensus 79 ~~gr~i~V~~a~~~~ 93 (107)
T 2lmi_A 79 MGQRYVEVYEINNED 93 (107)
T ss_dssp SSSSCCCCEECCHHH
T ss_pred eCCeEEEEEECCHHH
Confidence 899999888777654
No 134
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.27 E-value=5.7e-07 Score=67.64 Aligned_cols=76 Identities=14% Similarity=0.131 Sum_probs=56.6
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEECC
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIHG 272 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ing 272 (295)
++..+++|| +|.| ++++||+++|.+ || .+.+...+.+ +++..+||+|.|.+++.....+... ....|+|
T Consensus 12 ~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G-~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l--~g~~~~g 84 (95)
T 2ek1_A 12 KPGPTVIKV---QNMPFTVSIDEILDFFYG-YQ-VIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL--NDRPIGS 84 (95)
T ss_dssp ---CEEEEE---ECCCTTCCHHHHHHHTTT-SC-BCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHH--TTCEETT
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cC-CccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHh--CCCeECC
Confidence 345689999 8999 999999999994 99 5543444444 6788999999999999888776531 1236899
Q ss_pred ceeEEEe
Q 045525 273 KDIRVRR 279 (295)
Q Consensus 273 k~vWark 279 (295)
+.+-+..
T Consensus 85 r~l~v~~ 91 (95)
T 2ek1_A 85 RKVKLSG 91 (95)
T ss_dssp EECEEEC
T ss_pred cEEEEEe
Confidence 9887764
No 135
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.27 E-value=2.3e-06 Score=68.24 Aligned_cols=78 Identities=14% Similarity=0.080 Sum_probs=62.5
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCce
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGKD 274 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~ 274 (295)
.+..|++|| ++.| +||+|+++.|.+ || -|..|.|- +..+||+|.|.+++.....+..-+...+.|+||.
T Consensus 18 ~~ps~~l~V---~NLp~~~te~~L~~lF~~-fG--~V~~v~i~---~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~ 88 (100)
T 3r27_A 18 TPASPVVHI---RGLIDGVVEADLVEALQE-FG--PISYVVVM---PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHP 88 (100)
T ss_dssp CCCCSEEEE---ESCCTTCCHHHHHHHHGG-GS--CEEEEEEE---TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEE
T ss_pred CCCCcEEEE---eCCCCCCCHHHHHHHHhc-cC--CEEEEEEE---cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcE
Confidence 345689999 9988 999999999995 99 46667663 3568999999999988888775555668899999
Q ss_pred eEEEecccC
Q 045525 275 IRVRRFVPK 283 (295)
Q Consensus 275 vWarky~pk 283 (295)
+.+.-..+|
T Consensus 89 i~V~~S~~k 97 (100)
T 3r27_A 89 AFVNYSTSQ 97 (100)
T ss_dssp EEEEECSCS
T ss_pred EEEEecccc
Confidence 988766554
No 136
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.27 E-value=1.7e-06 Score=74.58 Aligned_cols=80 Identities=21% Similarity=0.140 Sum_probs=59.9
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEECC
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIHG 272 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ing 272 (295)
+...+|||| +|.| +||+||+++|. +|| +++.-.+|.+ ++++.+||+|.|.+++..+..|...+ ...++|
T Consensus 12 ~~p~~tlfV---gnLp~~~te~~L~~~F~-~~G-~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~--~~~~~g 84 (213)
T 4f02_A 12 SYPMASLYV---GDLHPDVTEAMLYEKFS-PAG-PILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN--FDVIKG 84 (213)
T ss_dssp ---CCEEEE---ESCCTTCCHHHHHHHHG-GGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT--TCEETT
T ss_pred CCCCcEEEE---eCCCCCCCHHHHHHHHH-hhC-CEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhh--hhhcCC
Confidence 445689999 9999 99999999998 599 5544444544 78999999999999999888775311 126889
Q ss_pred ceeEEEecccC
Q 045525 273 KDIRVRRFVPK 283 (295)
Q Consensus 273 k~vWarky~pk 283 (295)
|.+.+....++
T Consensus 85 ~~i~~~~~~~~ 95 (213)
T 4f02_A 85 KPVRIMWSQRD 95 (213)
T ss_dssp EECEEEECCCC
T ss_pred ccccccccccc
Confidence 98877765544
No 137
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.26 E-value=9.7e-07 Score=73.29 Aligned_cols=80 Identities=15% Similarity=0.081 Sum_probs=64.0
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCc--eeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEE
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDC--VEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFD 269 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~c--ve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~ 269 (295)
.+++.+++|| +|.| +|++||++||.+ || .. |+.|.+-. .+++.+||+|.|.+++..+..|. .+ ...
T Consensus 40 ~~~~~~~lfV---gnLp~~~te~dL~~~F~~-~G-~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~--g~~ 111 (136)
T 2hgl_A 40 EGGEGFVVKL---RGLPWSCSVEDVQNFLSD-CT-IHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KD--RES 111 (136)
T ss_dssp SCCTTCEEEE---ESCCTTCCHHHHHHHTTT-CC-CSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TT--EEE
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHH-hC-CcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cC--CCE
Confidence 3567789999 9999 999999999995 99 53 55555543 67889999999999999999988 43 357
Q ss_pred ECCceeEEEecccC
Q 045525 270 IHGKDIRVRRFVPK 283 (295)
Q Consensus 270 Ingk~vWarky~pk 283 (295)
|+|+.|-+....|+
T Consensus 112 l~gr~i~V~~a~~~ 125 (136)
T 2hgl_A 112 MGHRYIEVFKSHRT 125 (136)
T ss_dssp SSSSEEEEEECCHH
T ss_pred ECCEEEEEEECChH
Confidence 89999988776544
No 138
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.26 E-value=2.3e-06 Score=65.80 Aligned_cols=76 Identities=14% Similarity=0.215 Sum_probs=58.5
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEee-c-cCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMG-C-CRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~-~-~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
..+..+++|| +|.| ++++||+++|. +|| . |+.+.+. + +++..+||+|.|.+++....++..-+ ...|+
T Consensus 25 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~-~~G-~-i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~--g~~~~ 96 (107)
T 3ulh_A 25 GVETGGKLLV---SNLDFGVSDADIQELFA-EFG-T-LKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN--GVPLD 96 (107)
T ss_dssp CCCCSEEEEE---ESCCTTCCHHHHHHHHH-TTS-C-EEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT--TCEET
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHH-hcC-C-eEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhC--CCEeC
Confidence 4567799999 7888 99999999999 599 4 4555544 3 77888999999999999877765311 12679
Q ss_pred CceeEEEe
Q 045525 272 GKDIRVRR 279 (295)
Q Consensus 272 gk~vWark 279 (295)
|+.+-++.
T Consensus 97 g~~l~V~~ 104 (107)
T 3ulh_A 97 GRPMNIQL 104 (107)
T ss_dssp TEECEEEE
T ss_pred CcEEEEEE
Confidence 99887754
No 139
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.25 E-value=2.1e-06 Score=68.89 Aligned_cols=78 Identities=19% Similarity=0.235 Sum_probs=61.2
Q ss_pred CceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCce
Q 045525 200 DRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGENELKQFDIHGKD 274 (295)
Q Consensus 200 ~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~ 274 (295)
.||+|| +|.| ++++||+++|.+ || + |+.+.+-. ++++.+||+|.|.+++.....+..-+ ...++|+.
T Consensus 2 ~~~l~v---~nlp~~~~~~~l~~~f~~-~G-~-i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~--~~~~~g~~ 73 (167)
T 1fxl_A 2 KTNLIV---NYLPQNMTQEEFRSLFGS-IG-E-IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLN--GLRLQTKT 73 (167)
T ss_dssp CSEEEE---ESCCTTCCHHHHHHHHHT-TS-C-EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT--TCEETTEE
T ss_pred cceEEE---cCCCCCCCHHHHHHHHHh-cC-C-eEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcC--CCccCCce
Confidence 479999 8999 999999999995 99 4 55555543 67888999999999999888765211 13689999
Q ss_pred eEEEecccCCC
Q 045525 275 IRVRRFVPKPA 285 (295)
Q Consensus 275 vWarky~pk~~ 285 (295)
+.++...|+..
T Consensus 74 l~v~~~~~~~~ 84 (167)
T 1fxl_A 74 IKVSYARPSSA 84 (167)
T ss_dssp CEEEECCCCCG
T ss_pred EEEEecCCCcc
Confidence 98887776654
No 140
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.23 E-value=1.9e-06 Score=69.97 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=63.3
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCcee-------EEEeeccCCCCceEEEEecCHHHHHHHhCCCCccc
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVE-------DIKMGCCRDQSLYARVIVRSPAYITLILGENELKQ 267 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve-------~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~k 267 (295)
....+++|| +|.| +|+++|+++|. .|| .+.. .+.+..+++..+||+|.|.+.+....++..-+ .
T Consensus 42 ~~~~~~l~V---~nLp~~~te~~L~~~F~-~~G-~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~ln--g 114 (143)
T 3egn_A 42 GEPNCRIYV---KNLAKHVQEKDLKYIFG-RYV-DFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEAN--G 114 (143)
T ss_dssp CSCCSEEEE---EEECTTCCHHHHHHHHG-GGC-CTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHT--T
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHH-HhC-CcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhC--C
Confidence 455689999 8888 99999999998 599 5433 24444478999999999999999887765322 1
Q ss_pred EEECCceeEEEecccCCCCCC
Q 045525 268 FDIHGKDIRVRRFVPKPAPVA 288 (295)
Q Consensus 268 f~Ingk~vWarky~pk~~~~~ 288 (295)
..|+|+.+-+....+++++..
T Consensus 115 ~~~~g~~l~V~~a~~~~~~~~ 135 (143)
T 3egn_A 115 YVLFGKPMVVQFARSARPKQD 135 (143)
T ss_dssp BEETTEECEEEECCCSCC---
T ss_pred CEeCCcEEEEEECCCCCCccC
Confidence 357999998888877665543
No 141
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.23 E-value=3.3e-06 Score=70.16 Aligned_cols=83 Identities=14% Similarity=0.174 Sum_probs=65.5
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCCCCcccEEE
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGENELKQFDI 270 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g~~~~kf~I 270 (295)
.+...+++|| +|.| ++++||+++|.+ || + |+.+.+.. ++++.+||+|.|.+++....++..-+ ...|
T Consensus 110 ~~~~~~~l~v---~nl~~~~~~~~l~~~f~~-~G-~-v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--g~~~ 181 (198)
T 2yh0_A 110 VPDSAHKLFI---GGLPNYLNDDQVKELLTS-FG-P-LKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLN--GMQL 181 (198)
T ss_dssp SSCCCCEEEE---ECCCTTCCHHHHHHHHHT-BS-C-EEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHT--TCEE
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHH-cC-C-ccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcC--CCEE
Confidence 4567799999 8988 999999999995 99 5 55555543 67789999999999998777665311 1368
Q ss_pred CCceeEEEecccCCCC
Q 045525 271 HGKDIRVRRFVPKPAP 286 (295)
Q Consensus 271 ngk~vWarky~pk~~~ 286 (295)
+|+.+-++...|+.++
T Consensus 182 ~g~~l~v~~a~~~~~~ 197 (198)
T 2yh0_A 182 GDKKLLVQRASVGAKN 197 (198)
T ss_dssp TTEECEEEESCCCCCC
T ss_pred CCEEEEEEECCCCCCC
Confidence 9999999999888654
No 142
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.23 E-value=4.7e-06 Score=66.89 Aligned_cols=79 Identities=15% Similarity=0.050 Sum_probs=61.2
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCce
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGKD 274 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~ 274 (295)
|....++|| +|.| ++++|++++|.+ || .-|..+.+-. .++.+||+|.|.+++..+..+..-+ ...++|+.
T Consensus 25 p~~~~~l~V---gnLp~~~te~dL~~~F~~-~G-~~v~~v~i~~-~~~rGfaFV~F~~~e~A~~Ai~~ln--g~~l~Gr~ 96 (111)
T 2jvr_A 25 PAKRYRITM---KNLPEGCSWQDLKDLARE-NS-LETTFSSVNT-RDFDGTGALEFPSEEILVEALERLN--NIEFRGSV 96 (111)
T ss_dssp CCCCEEEEE---ECSSCCCCHHHHHHHHHH-HT-CCCSEEECSS-CSSSCCEEEEESSHHHHHHHHHHTT--TEEETTEE
T ss_pred CCCCCEEEE---ECCCCCCCHHHHHHHHHH-hC-CeeEEEEEEc-CCCCCEEEEEECCHHHHHHHHHHcC--CCEECCeE
Confidence 556678988 8999 999999999995 99 5566666632 4678999999999999887775322 24789999
Q ss_pred eEEEecccC
Q 045525 275 IRVRRFVPK 283 (295)
Q Consensus 275 vWarky~pk 283 (295)
+-++...++
T Consensus 97 i~V~~a~~~ 105 (111)
T 2jvr_A 97 ITVERDDNP 105 (111)
T ss_dssp EEEEESCC-
T ss_pred EEEEECCCC
Confidence 988876544
No 143
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.22 E-value=1.3e-06 Score=75.64 Aligned_cols=71 Identities=17% Similarity=0.204 Sum_probs=59.2
Q ss_pred CCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCce
Q 045525 199 TDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIHGKD 274 (295)
Q Consensus 199 d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~ 274 (295)
+.||+|| +|.| +++++|+++|. +|| .|..|.|.. .++..+||+|.|.+++....++.... ..++|+.
T Consensus 108 ~~~~l~V---~nLp~~~t~~~L~~~F~-~~G--~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~---~~~~Gr~ 178 (193)
T 2voo_A 108 KNRSVYI---KGFPTDATLDDIKEWLE-DKG--QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG---QKYKETD 178 (193)
T ss_dssp HHTEEEE---ECCCTTCCHHHHHHHHT-TSC--CEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT---CEETTEE
T ss_pred ccCEEEe---cCCCCcCCHHHHHHHHh-cCC--CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC---CeECCEE
Confidence 3589999 9999 99999999999 599 477777765 67789999999999999999997543 2799999
Q ss_pred eEEE
Q 045525 275 IRVR 278 (295)
Q Consensus 275 vWar 278 (295)
+-++
T Consensus 179 l~V~ 182 (193)
T 2voo_A 179 LLIL 182 (193)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 8544
No 144
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.21 E-value=6.5e-06 Score=60.66 Aligned_cols=73 Identities=21% Similarity=0.378 Sum_probs=57.7
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhh----CC-----CceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCc
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRY----GE-----DCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENEL 265 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~y----G~-----~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~ 265 (295)
+.+.||+|| +|.| ++++||+++|.+ | |. +-|+++.+ .++.+||+|.|.+++.....+ .-+
T Consensus 3 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~~~~~g~~~~~~~~v~~~~~---~~~kg~afV~f~~~~~a~~A~-~l~- 73 (87)
T 2hzc_A 3 LGSARRLYV---GNIPFGITEEAMMDFFNA-QMRLGGLTQAPGNPVLAVQI---NQDKNFAFLEFRSVDETTQAM-AFD- 73 (87)
T ss_dssp SGGGGEEEE---ESCCTTCCHHHHHHHHHH-HHHHTTCCSSSSCSEEEEEE---CSSSSEEEEEESSHHHHHHHG-GGT-
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHH-HhhhcccccCCCCcceEEEe---cCCCcEEEEEcCCHHHHHHHH-hcC-
Confidence 456799999 8988 999999999995 8 61 15777777 345899999999999988888 432
Q ss_pred ccEEECCceeEEEe
Q 045525 266 KQFDIHGKDIRVRR 279 (295)
Q Consensus 266 ~kf~Ingk~vWark 279 (295)
...++|+.+-+++
T Consensus 74 -g~~~~g~~l~V~r 86 (87)
T 2hzc_A 74 -GIIFQGQSLKIRR 86 (87)
T ss_dssp -TCEETTEECEEEC
T ss_pred -CCEECCeEEEEeC
Confidence 3468999987764
No 145
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.20 E-value=4e-06 Score=68.56 Aligned_cols=79 Identities=18% Similarity=0.160 Sum_probs=61.5
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCc
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGK 273 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk 273 (295)
.....+++|| +|.| +|++||+++|.+ || + |+.+.+- ..+.+||+|.|.+.+.....+..-+. ..|+|+
T Consensus 69 ~~~~~~~l~V---~nl~~~~t~~~l~~~F~~-~G-~-i~~v~i~--~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~ 138 (150)
T 2i2y_A 69 SCPLDCKVYV---GNLGNNGNKTELERAFGY-YG-P-LRSVWVA--RNPPGFAFVEFEDPRDAADAVRELDG--RTLCGC 138 (150)
T ss_dssp SSTTSCEEEE---ESCCSCCSCHHHHHHHHH-HS-C-EEEEEEC--SSSCSEEEEEESSHHHHHHHHHHHSS--SCSSSS
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-hC-C-EEEEEEe--eCCCcEEEEEECCHHHHHHHHHHcCC--CEECCe
Confidence 4567799999 8888 999999999995 99 4 5666663 23688999999999988777642111 247999
Q ss_pred eeEEEecccCC
Q 045525 274 DIRVRRFVPKP 284 (295)
Q Consensus 274 ~vWarky~pk~ 284 (295)
.+-++...|++
T Consensus 139 ~l~v~~a~~~~ 149 (150)
T 2i2y_A 139 RVRVELSNGEK 149 (150)
T ss_dssp CCEEEECCCCC
T ss_pred EEEEEEcCCCC
Confidence 99998888775
No 146
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.20 E-value=1.5e-06 Score=71.61 Aligned_cols=80 Identities=21% Similarity=0.203 Sum_probs=63.5
Q ss_pred CCCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCcee-EEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEE
Q 045525 195 NDADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVE-DIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFD 269 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve-~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~ 269 (295)
..+++.+++|| +|.| +||+||++||.. || .++ .|.|-. .+++.+||+|.|.+++..+..|... . -.
T Consensus 37 ~~~~~~~~lfV---gnLp~~~te~dL~~~F~~-~~--i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~-~--~~ 107 (126)
T 2hgm_A 37 ADSANDGFVRL---RGLPFGCTKEEIVQFFSG-LE--IVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH-K--ER 107 (126)
T ss_dssp TCSSSCCEEEE---ECCCTTCCHHHHHHHTTT-SC--EEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTT-T--CC
T ss_pred CCCCCCCEEEE---eCCCCCCCHHHHHHHHhc-CC--ceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHC-C--CE
Confidence 45677899999 9999 999999999996 67 442 555543 6888999999999999999999742 2 46
Q ss_pred ECCceeEEEecccC
Q 045525 270 IHGKDIRVRRFVPK 283 (295)
Q Consensus 270 Ingk~vWarky~pk 283 (295)
|+||.|.+.+..|+
T Consensus 108 l~gR~I~V~~a~~~ 121 (126)
T 2hgm_A 108 IGHRYIEVFKSSQE 121 (126)
T ss_dssp BTTBCCCCEEECHH
T ss_pred ECCEEEEEEECCHH
Confidence 89999887766543
No 147
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.19 E-value=1.1e-06 Score=64.82 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=49.6
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCC
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGE 262 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g 262 (295)
+.+.+++|| +|.| ++++||+++|. +|| + |+.+.|.. +++..+||+|.|.+++....++..
T Consensus 2 ~~~~~~l~v---~nlp~~~t~~~l~~~f~-~~G-~-i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 66 (85)
T 1x4e_A 2 SSGSSGLYI---RGLQPGTTDQDLVKLCQ-PYG-K-IVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTA 66 (85)
T ss_dssp CCCCCEEEE---ESCCTTCCHHHHHTTST-TTS-C-EEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHH
T ss_pred CCCCcEEEE---eCCCCCCCHHHHHHHHH-hcC-C-eEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 466799999 8898 99999999999 599 4 55555443 688899999999999998887763
No 148
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.19 E-value=4.7e-06 Score=63.53 Aligned_cols=76 Identities=17% Similarity=0.145 Sum_probs=58.9
Q ss_pred eEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCceeEEEe
Q 045525 202 TLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGKDIRVRR 279 (295)
Q Consensus 202 t~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~vWark 279 (295)
|+|| +|.| +|++||+++|. +|| + |+.+.|... ..+||+|.|.+++....++..-+. ..++|+.+-++.
T Consensus 2 ~l~V---~nLp~~~t~~~l~~~F~-~~G-~-i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~V~~ 71 (101)
T 2hvz_A 2 KVYV---GNLGTGAGKGELERAFS-YYG-P-LRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDG--KVICGSRVRVEL 71 (101)
T ss_dssp EEEE---ECCCSSCSHHHHHHHHH-HHC-C-CSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHH--SCSSSCCCEEEE
T ss_pred EEEE---eCCCCCCCHHHHHHHHH-hcC-C-eEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCC--CeECCcEEEEEE
Confidence 6888 8888 99999999999 599 4 566666432 788999999999998887763222 248999999988
Q ss_pred cccCCCCC
Q 045525 280 FVPKPAPV 287 (295)
Q Consensus 280 y~pk~~~~ 287 (295)
..|++...
T Consensus 72 a~~~~~~~ 79 (101)
T 2hvz_A 72 STGMPRRS 79 (101)
T ss_dssp SSSCCCSS
T ss_pred ccCCCCcc
Confidence 88776443
No 149
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.19 E-value=4e-06 Score=69.63 Aligned_cols=78 Identities=18% Similarity=0.263 Sum_probs=59.6
Q ss_pred CCCceEEEEccCCcc--cCHHHHHHHHHHhhC--C-C------ceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcc
Q 045525 198 DTDRTLFATFSKGHP--ISRAELFEFFIRRYG--E-D------CVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELK 266 (295)
Q Consensus 198 ~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG--~-~------cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~ 266 (295)
+..||+|| +|.| +|++||+++|.+ || . - .|..+.+ ++..+||+|.|.+++..+.+| . ..
T Consensus 2 ~~~~~l~V---~nLp~~~te~~l~~~F~~-~g~i~g~~~~~~~~v~~~~~---~~~~g~afV~F~~~~~A~~Al-~--l~ 71 (198)
T 2yh0_A 2 AMARRLYV---GNIPFGITEEAMMDFFNA-QMRLGGLTQAPGNPVLAVQI---NQDKNFAFLEFRSVDETTQAM-A--FD 71 (198)
T ss_dssp --CCEEEE---ESCCTTCCHHHHHHHHHH-HHHHHTCCSSSSCSEEEEEE---ETTTTEEEEEESCSHHHHHHG-G--GT
T ss_pred CceeEEEE---cCCCCCCCHHHHHHHHHH-HHhhcccccCCCCceEEeEe---cCCCCEEEEEeCCHHHHHHHH-H--hc
Confidence 35699999 8999 999999999995 85 0 1 3444444 677899999999999999998 3 33
Q ss_pred cEEECCceeEEEecccCCC
Q 045525 267 QFDIHGKDIRVRRFVPKPA 285 (295)
Q Consensus 267 kf~Ingk~vWarky~pk~~ 285 (295)
...|+|+.+.++...++++
T Consensus 72 g~~~~g~~i~v~~~~~~~~ 90 (198)
T 2yh0_A 72 GIIFQGQSLKIRRPHDYQP 90 (198)
T ss_dssp TEEETTEEEEEECCCCCCC
T ss_pred CCEEcCceEEEeCCCCCCC
Confidence 4578999998887766543
No 150
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.16 E-value=2e-06 Score=74.11 Aligned_cols=79 Identities=14% Similarity=0.188 Sum_probs=61.8
Q ss_pred CCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCceeE
Q 045525 199 TDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGKDIR 276 (295)
Q Consensus 199 d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~vW 276 (295)
+.+++|| +|.| ++++||+++|. +|| ++++...+.+.+...+||+|.|.+.+....++..-+ ...|+|+.+-
T Consensus 102 ~~~~l~v---~nl~~~~t~~~l~~~F~-~~G-~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~ln--g~~~~g~~i~ 174 (213)
T 4f02_A 102 GVGNIFI---KNLDKSIDNKALYDTFS-AFG-NILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN--GMLLNDRKVF 174 (213)
T ss_dssp CTTEEEE---ESCCTTCCHHHHHHHHG-GGS-CEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHT--TCEETTEECE
T ss_pred ccccceE---CCcccccHHHHHHHHHh-hcC-CeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhC--CCEECCEEEE
Confidence 4578998 8888 99999999998 599 655555555556678999999999999887764311 1368999999
Q ss_pred EEecccCC
Q 045525 277 VRRFVPKP 284 (295)
Q Consensus 277 arky~pk~ 284 (295)
+..+.||+
T Consensus 175 V~~a~~~~ 182 (213)
T 4f02_A 175 VGRFKSRK 182 (213)
T ss_dssp EEECCCHH
T ss_pred EEEcCCCc
Confidence 99888764
No 151
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.16 E-value=5.8e-06 Score=60.84 Aligned_cols=72 Identities=17% Similarity=0.334 Sum_probs=56.1
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCce
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGKD 274 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~ 274 (295)
+...+++|| +|.| ++++||+++|. +|| + |+.+.+-. ..+||+|.|.+.+....++..- .....++|+.
T Consensus 9 ~~~~~~l~V---~~l~~~~t~~~l~~~f~-~~G-~-i~~~~~~~---~kg~afV~f~~~~~A~~a~~~l-~~~~~~~g~~ 78 (85)
T 2ytc_A 9 DKTITTLYV---GGLGDTITETDLRNHFY-QFG-E-IRTITVVQ---RQQCAFIQFATRQAAEVAAEKS-FNKLIVNGRR 78 (85)
T ss_dssp CSSCCCEEE---ECCTTTSCHHHHHHHHH-TTS-C-EEEEEEEG---GGTEEEEEESSHHHHHHHHHTT-TTTCEETTEE
T ss_pred CCCccEEEE---cCCCCCCCHHHHHHHHH-hCC-C-EeEEEEEC---CCCEEEEEECCHHHHHHHHHHh-cCCeeECCCE
Confidence 456789999 8888 99999999999 599 4 77777744 4689999999999988887642 0124788988
Q ss_pred eEEE
Q 045525 275 IRVR 278 (295)
Q Consensus 275 vWar 278 (295)
+-++
T Consensus 79 l~v~ 82 (85)
T 2ytc_A 79 LNVK 82 (85)
T ss_dssp CCEE
T ss_pred EEEE
Confidence 7443
No 152
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.15 E-value=1.8e-06 Score=70.06 Aligned_cols=81 Identities=15% Similarity=0.063 Sum_probs=56.5
Q ss_pred CCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cC--CCCceEEEEecCHHHHHHHhCCCCcccEE-E
Q 045525 199 TDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CR--DQSLYARVIVRSPAYITLILGENELKQFD-I 270 (295)
Q Consensus 199 d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~--~qplfarivf~s~~~v~~vL~g~~~~kf~-I 270 (295)
|.||+|| +|.| +|++||+++|. +|| + |+.+.+-. ++ ++.+||+|.|.+++.....+..-+..++. -
T Consensus 2 ~~~~l~V---~nLp~~~te~~l~~~F~-~~G-~-i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~ 75 (175)
T 3nmr_A 2 DAIKMFV---GQVPRTWSEKDLRELFE-QYG-A-VYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPG 75 (175)
T ss_dssp CCEEEEE---ESCCTTCCHHHHHHHHH-TTS-C-EEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTT
T ss_pred CceEEEE---eCCCCCCCHHHHHHHHH-hCC-C-EEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccC
Confidence 6799999 8999 99999999999 499 5 55555443 33 78999999999999877775421111111 1
Q ss_pred CCceeEEEecccCCC
Q 045525 271 HGKDIRVRRFVPKPA 285 (295)
Q Consensus 271 ngk~vWarky~pk~~ 285 (295)
.++.+.++...+++.
T Consensus 76 ~~~~~~~~~~~~~~~ 90 (175)
T 3nmr_A 76 MHHPIQMKPADSEKN 90 (175)
T ss_dssp CSSCCEEEECGGGCC
T ss_pred CccceEEcccccccc
Confidence 245666666555544
No 153
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.13 E-value=8.8e-06 Score=62.50 Aligned_cols=77 Identities=18% Similarity=0.350 Sum_probs=59.8
Q ss_pred CCCCCCceEEEEccCCcc---cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 195 NDADTDRTLFATFSKGHP---ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~P---vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
..+.+.+++|| +|.| ++++||+++|.+ || -|+.+.| ..+||+|.|.+.+....++...+ ...++
T Consensus 17 ~~~~~~~~l~V---~nLp~~~~t~~~L~~~F~~-~G--~v~~v~i-----~~g~afV~f~~~~~A~~Ai~~l~--g~~~~ 83 (97)
T 2xnq_A 17 RGSHMKSRLFI---GNLPLKNVSKEDLFRIFSP-YG--HIMQINI-----KNAFGFIQFDNPQSVRDAIEXES--QEMNF 83 (97)
T ss_dssp --CCTTCEEEE---ESCCSSCCCHHHHHHHHGG-GS--CEEEEEE-----CSSEEEEEESSHHHHHHHHHHHT--TSEET
T ss_pred CCCCCCCEEEE---eCCCcccCCHHHHHHHHHh-cC--CEEEEEE-----eCCEEEEEECCHHHHHHHHHHcC--CCEEC
Confidence 45667899999 7877 699999999995 99 5777777 26899999999999887776322 23688
Q ss_pred CceeEEEecccCC
Q 045525 272 GKDIRVRRFVPKP 284 (295)
Q Consensus 272 gk~vWarky~pk~ 284 (295)
|+.+-++...+++
T Consensus 84 g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 84 GKKLILEVSSSNA 96 (97)
T ss_dssp TEECEEEECCCCC
T ss_pred CEEEEEEecCCCC
Confidence 9999888766553
No 154
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.13 E-value=1.2e-05 Score=65.31 Aligned_cols=77 Identities=18% Similarity=0.276 Sum_probs=59.6
Q ss_pred CCCceEEEEccCCcc--cCHHHHHHHHHHhhC--C-C------ceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcc
Q 045525 198 DTDRTLFATFSKGHP--ISRAELFEFFIRRYG--E-D------CVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELK 266 (295)
Q Consensus 198 ~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG--~-~------cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~ 266 (295)
++.|++|| +|.| +|++||+++|.+ || . - .|..+.+ ++..+||+|.|.+++.....+ . ..
T Consensus 2 r~~~~l~V---~nLp~~~t~~~l~~~F~~-~g~~~g~~~~~~~~v~~~~~---~~~~g~afV~f~~~~~A~~A~-~--~~ 71 (172)
T 2g4b_A 2 GSARRLYV---GNIPFGITEEAMMDFFNA-QMRLGGLTQAPGNPVLAVQI---NQDKNFAFLEFRSVDETTQAM-A--FD 71 (172)
T ss_dssp CGGGEEEE---ESCCTTCCHHHHHHHHHH-HHHHTTCCSSSSCSEEEEEE---ETTTTEEEEEESSHHHHHHHG-G--GT
T ss_pred CcccEEEE---cCCCcccCHHHHHHHHHH-HhhhcccccCCCCceeeeEe---cCCCCEEEEEeCCHHHHHHHH-H--hC
Confidence 46799999 8999 999999999995 84 0 1 4455554 567899999999999999888 3 22
Q ss_pred cEEECCceeEEEecccCC
Q 045525 267 QFDIHGKDIRVRRFVPKP 284 (295)
Q Consensus 267 kf~Ingk~vWarky~pk~ 284 (295)
...++|+.+.++...++.
T Consensus 72 ~~~~~g~~i~v~~~~~~~ 89 (172)
T 2g4b_A 72 GIIFQGQSLKIRRPHDYQ 89 (172)
T ss_dssp TCEETTEECEEECCSSCC
T ss_pred CcEecCceeeecCCcccC
Confidence 346899999998755443
No 155
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=6.6e-06 Score=62.01 Aligned_cols=78 Identities=17% Similarity=0.164 Sum_probs=58.0
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEE--EeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECC
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDI--KMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHG 272 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v--~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ing 272 (295)
+...+++|| +|.| ++++||+++|. +|| + |+.+ .+.+ +....|+|.|.+++.....+..-+. ..|+|
T Consensus 12 ~~~~~~l~V---~nlp~~~t~~~l~~~F~-~~G-~-v~~~~~i~~~--~~~~~afV~f~~~~~a~~Ai~~l~g--~~~~g 81 (96)
T 2e44_A 12 RQRIRKLQI---RNIPPHLQWEVLDSLLV-QYG-V-VESCEQVNTD--SETAVVNVTYSSKDQARQALDKLNG--FQLEN 81 (96)
T ss_dssp CCSCCCEEE---EEECSSSCHHHHHHHHH-HHS-C-EEEEEEECCS--SSSEEEEEEESSHHHHHHHHHHHTT--CBCSS
T ss_pred CCCCCEEEE---EcCCCCCCHHHHHHHHH-hcC-C-eEEEEEeecC--CCCCEEEEEECCHHHHHHHHHHhCC--CEECC
Confidence 445789999 8888 99999999999 599 4 5555 3433 2223399999999987776642111 25799
Q ss_pred ceeEEEecccCC
Q 045525 273 KDIRVRRFVPKP 284 (295)
Q Consensus 273 k~vWarky~pk~ 284 (295)
+.+-++.+.||.
T Consensus 82 ~~l~V~~a~~~~ 93 (96)
T 2e44_A 82 FTLKVAYIPDEM 93 (96)
T ss_dssp CBCEEEECCCCC
T ss_pred cEEEEEEcCccc
Confidence 999999998884
No 156
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.08 E-value=5.2e-06 Score=69.84 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=59.7
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEe-ec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKM-GC--CRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M-~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
.++.++||| +|.| ++++||+++|. +|| . |+.|.+ .+ +++..+||+|.|.+++....+|...+. ..|+
T Consensus 25 ~~~~~~l~V---~nLp~~~t~~~l~~~f~-~~G-~-i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~--~~~~ 96 (216)
T 2qfj_A 25 LAIMSRVYV---GSIYYELGEDTIRQAFA-PFG-P-IKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNS--VMLG 96 (216)
T ss_dssp HHHHTEEEE---ECCCTTCCHHHHHHHHG-GGS-C-EEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSS--CCCC
T ss_pred cCcCCEEEE---ECCCCCCCHHHHHHHHH-hCC-C-EEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccC--CeeC
Confidence 456789999 8998 99999999998 599 5 555555 44 688999999999999998887763221 2578
Q ss_pred CceeEEEecccC
Q 045525 272 GKDIRVRRFVPK 283 (295)
Q Consensus 272 gk~vWarky~pk 283 (295)
|+.+.+....++
T Consensus 97 g~~l~v~~~~~~ 108 (216)
T 2qfj_A 97 GRNIKVGRPSNI 108 (216)
T ss_dssp -CCCEEECCSCC
T ss_pred CeeEEEecCCCc
Confidence 999988765544
No 157
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.07 E-value=2.1e-06 Score=71.57 Aligned_cols=82 Identities=12% Similarity=0.150 Sum_probs=61.3
Q ss_pred CCCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEe-ec-cCCCCceEEEEecCHHHHHHHhCCCCcccEEE
Q 045525 195 NDADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKM-GC-CRDQSLYARVIVRSPAYITLILGENELKQFDI 270 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M-~~-~~~qplfarivf~s~~~v~~vL~g~~~~kf~I 270 (295)
..+++.+++|| +|.| +||+||++||.+ || . + .|.+ .+ .+++.+||+|.|.+++..+..|. . ....|
T Consensus 41 ~~~~~~~~lfV---~nLp~~~te~dL~~~F~~-~G-i-~-~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~-~--~g~~l 110 (139)
T 2hgn_A 41 VQSTTGHCVHM---RGLPYKATENDIYNFFSP-LN-P-V-RVHIEIGPDGRVTGEADVEFATHEEAVAAMS-K--DRANM 110 (139)
T ss_dssp ----CCCCEEC---CSCCTTCCHHHHHHHHCS-CC-C-S-EEECCCSSSSCSSCCCEEECSHHHHHHHHTT-C--CSCSS
T ss_pred CCCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cC-C-e-EEEEEECCCCCCceEEEEEeCCHHHHHHHHh-h--CCCEE
Confidence 35677889998 9999 999999999995 99 3 3 4444 33 68889999999999999999983 2 23468
Q ss_pred CCceeEEEecccCCCC
Q 045525 271 HGKDIRVRRFVPKPAP 286 (295)
Q Consensus 271 ngk~vWarky~pk~~~ 286 (295)
+|+.|-+..-.++...
T Consensus 111 ~gR~i~V~~a~~~~~~ 126 (139)
T 2hgn_A 111 QHRYIELFLNSTTGAS 126 (139)
T ss_dssp SSCCCCCEECCCSCC-
T ss_pred CCEEEEEEECCCCCCC
Confidence 9998888776666544
No 158
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.06 E-value=4e-06 Score=65.24 Aligned_cols=59 Identities=14% Similarity=0.206 Sum_probs=48.7
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhC
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILG 261 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~ 261 (295)
..+.+++|| +|.| ++++||+++|.+ || + |+.+.+-. +++..+||+|.|.+.+....++.
T Consensus 22 ~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G-~-i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~ 84 (114)
T 1x5o_A 22 EQDPTNLYI---SNLPLSMDEQELENMLKP-FG-Q-VISTRILRDSSGTSRGVGFARMESTEKCEAVIG 84 (114)
T ss_dssp CCCTTEEEE---ESCCTTCCHHHHHHTTTT-TS-C-EEEEEEEECSSSCEEEEEEEEESCHHHHHHHHH
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cC-C-EEEEEEEECCCCCcceEEEEEECCHHHHHHHHH
Confidence 456789999 8888 999999999995 99 5 55665544 67788999999999999877765
No 159
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.06 E-value=4.8e-06 Score=66.42 Aligned_cols=78 Identities=14% Similarity=0.110 Sum_probs=60.6
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEee-c-cCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMG-C-CRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~-~-~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
...+.+++|| +|.| +|++||++||.. |+ |++|.|- + .+++.+||+|.|.+++..+..|. . -.-.|+
T Consensus 12 ~~~~~~~v~V---~nLp~~~te~dl~~~F~~-~~---v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~--~~~~~~ 81 (109)
T 2dnn_A 12 INPDDLYVSV---HGMPFSAMENDVRDFFHG-LR---VDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK-R--NRMLMI 81 (109)
T ss_dssp CCHHHHEEEE---ECCCSSCCHHHHHHHTTT-SC---CCEEEECCCTTCCCCSEEEEECSSHHHHHHHHH-T--TTEEET
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHhcc-CC---eeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-c--CCCeEC
Confidence 3456678998 9999 999999999996 65 3444443 3 68889999999999999888884 2 234799
Q ss_pred CceeEEEecccC
Q 045525 272 GKDIRVRRFVPK 283 (295)
Q Consensus 272 gk~vWarky~pk 283 (295)
|+.|.+.+..++
T Consensus 82 gr~i~V~~a~~~ 93 (109)
T 2dnn_A 82 QRYVEVSPATER 93 (109)
T ss_dssp TEEEEEEECCHH
T ss_pred CeEEEEEECCcc
Confidence 999988766544
No 160
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.06 E-value=4.6e-06 Score=63.46 Aligned_cols=79 Identities=18% Similarity=0.300 Sum_probs=58.0
Q ss_pred CCCCceEEEEccCCcc---cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCc
Q 045525 197 ADTDRTLFATFSKGHP---ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGK 273 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P---vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk 273 (295)
.++.+++|| +|.| ++++||+++|.+ || -|+.+.+. .+||+|.|.+++....++..-+. ..++|+
T Consensus 7 ~~~~~~l~V---~nlp~~~~t~~~l~~~F~~-~G--~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g--~~~~g~ 73 (96)
T 2kvi_A 7 IPPKSRLFI---GNLPLKNVSKEDLFRIFSP-YG--HIMQINIK-----NAFGFIQFDNPQSVRDAIECESQ--EMNFGK 73 (96)
T ss_dssp --CCEEEEE---ESSTTSCCCHHHHHHHHTT-TC--CCCEEEEE-----TTEEEEEESCHHHHHHHHHHHTC--SSCBTT
T ss_pred CCCCCEEEE---eCCCcccCCHHHHHHHHHh-cC--CEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCC--CeeCCc
Confidence 456789999 7877 599999999995 99 56677773 57999999999987777653111 146799
Q ss_pred eeEEEecccCCCCCC
Q 045525 274 DIRVRRFVPKPAPVA 288 (295)
Q Consensus 274 ~vWarky~pk~~~~~ 288 (295)
.+-++...+++.+..
T Consensus 74 ~l~V~~a~~~~~~~~ 88 (96)
T 2kvi_A 74 KLILEVSSSNARPQF 88 (96)
T ss_dssp TBCEEEEECCCC---
T ss_pred EEEEEEcCcCCCCCC
Confidence 998887777665544
No 161
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.05 E-value=2.4e-05 Score=76.10 Aligned_cols=84 Identities=15% Similarity=0.067 Sum_probs=65.2
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEECC
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIHG 272 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ing 272 (295)
....+|||| +|.| +|+++|+++|.. || .++...+|.+ ++...+||+|.|.+++.+..+|...+. ..|+|
T Consensus 99 ~~~~~~lfV---~nL~~~~te~~L~~~F~~-~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng--~~i~g 171 (437)
T 3pgw_S 99 GDAFKTLFV---ARVNYDTTESKLRREFEV-YG-PIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADG--KKIDG 171 (437)
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHH-cC-CeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCC--CEECC
Confidence 455689999 8888 999999999995 99 5444434444 788899999999999998888754222 26799
Q ss_pred ceeEEEecccCCCCC
Q 045525 273 KDIRVRRFVPKPAPV 287 (295)
Q Consensus 273 k~vWarky~pk~~~~ 287 (295)
+.|-+....|+..+.
T Consensus 172 r~i~V~~a~~~~~~~ 186 (437)
T 3pgw_S 172 RRVLVDVERGRTVKG 186 (437)
T ss_pred EEEEEEEeCCCCCCC
Confidence 999888887776544
No 162
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.04 E-value=1.6e-05 Score=65.11 Aligned_cols=79 Identities=11% Similarity=0.162 Sum_probs=58.6
Q ss_pred CCCceEEEEccCCcc--cCHHHHH----HHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 198 DTDRTLFATFSKGHP--ISRAELF----EFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 198 ~d~Rt~FvTFS~G~P--vse~Ei~----efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
+..+|||| +|.| +++++++ ++|. +|| + |+.|.+..+++..+||+|.|.+.+..+..+..-+. ..+.
T Consensus 27 ~p~~~LfV---~nL~~~~~e~~L~~~L~~~F~-~~G-~-I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng--~~l~ 98 (127)
T 2a3j_A 27 EPSQVVLI---TNINPEVPKEKLQALLYALAS-SQG-D-ILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQG--YPFQ 98 (127)
T ss_dssp SCCSEEEE---ESCCTTSCHHHHHHHHHHHHH-HHS-C-EEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTT--CCCT
T ss_pred CCCCEEEE---eCCCCCCCHHHHHHHHHHHhc-cCC-C-eEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCC--CEeC
Confidence 34689999 8888 8999876 6999 499 5 45666655678899999999998887766642211 2578
Q ss_pred CceeEEEecccCC
Q 045525 272 GKDIRVRRFVPKP 284 (295)
Q Consensus 272 gk~vWarky~pk~ 284 (295)
|+.+-+....++.
T Consensus 99 gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 99 GNPLVITFSETPQ 111 (127)
T ss_dssp TSCCEEEECCCCC
T ss_pred CCEEEEEEccCcc
Confidence 9998777655543
No 163
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.03 E-value=9e-06 Score=69.60 Aligned_cols=84 Identities=13% Similarity=0.177 Sum_probs=65.2
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
.++..++||| +|.| ++++||+++|.+ || + |+.|.+.. +++..+||+|.|.+.+....++...+. ..|+
T Consensus 84 ~~~~~~~l~V---~nLp~~~te~~L~~~F~~-~G-~-I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng--~~l~ 155 (177)
T 2f3j_A 84 GVETGAKLLV---SNLDFGVSDADIQELFAE-FG-T-LKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKG--VPLD 155 (177)
T ss_dssp SCTTCEEEEE---ECCCSCCCHHHHHHHHHH-TS-C-CSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTT--CBCS
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cC-C-eEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCC--CEEC
Confidence 4556789999 8988 999999999995 99 4 45666544 688899999999999998887764332 2679
Q ss_pred CceeEEEecccCCCCC
Q 045525 272 GKDIRVRRFVPKPAPV 287 (295)
Q Consensus 272 gk~vWarky~pk~~~~ 287 (295)
|+.+-++...+....+
T Consensus 156 Gr~l~V~~a~~~~~~~ 171 (177)
T 2f3j_A 156 GRPMDIQLVASQIDLE 171 (177)
T ss_dssp SSBCEEEEESSGGGGC
T ss_pred CEEEEEEEecCCCCCC
Confidence 9999888776654443
No 164
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.02 E-value=3.2e-06 Score=68.53 Aligned_cols=85 Identities=13% Similarity=0.165 Sum_probs=62.7
Q ss_pred CCCCceEEEEccCCcc---cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCc
Q 045525 197 ADTDRTLFATFSKGHP---ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGK 273 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P---vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk 273 (295)
.+..++||| ++.| ++|+||+++|. .|| + |..|.|- +.++||+|.|.+++.....+..-+.....|+|+
T Consensus 22 ~~p~~~l~V---~NLp~~~~te~~L~~lF~-~fG-~-V~~v~i~---~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr 92 (112)
T 1x4f_A 22 QELGRVIHL---SNLPHSGYSDSAVLKLAE-PYG-K-IKNYILM---RMKSQAFIEMETREDAMAMVDHCLKKALWFQGR 92 (112)
T ss_dssp SCCCCEEEE---ESCCCSSCCSHHHHTTTT-TTS-C-CSEEEEE---TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSS
T ss_pred CCCCCEEEE---eCCCCccCCHHHHHHHHH-hcC-C-EEEEEEe---cCCCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 445789999 8777 67999999999 599 4 5556662 457999999999888776665322233468999
Q ss_pred eeEEEecccCCCCCCCC
Q 045525 274 DIRVRRFVPKPAPVASP 290 (295)
Q Consensus 274 ~vWarky~pk~~~~~~~ 290 (295)
.+.+....+|+.....|
T Consensus 93 ~l~V~~a~~~~~~~~~~ 109 (112)
T 1x4f_A 93 CVKVDLSEKYKKLVSGP 109 (112)
T ss_dssp CCEEEEECSCSSSSCCC
T ss_pred EEEEEECccccccccCC
Confidence 99888777766655444
No 165
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.01 E-value=7.5e-06 Score=72.77 Aligned_cols=78 Identities=18% Similarity=0.133 Sum_probs=60.1
Q ss_pred CCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEe-ec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCc
Q 045525 199 TDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKM-GC--CRDQSLYARVIVRSPAYITLILGENELKQFDIHGK 273 (295)
Q Consensus 199 d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M-~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk 273 (295)
+.++||| ++.| +|++||+++|. +||..-|+.|.+ .+ ++++.+||+|.|.+.+..+.+|...+. ..|+|+
T Consensus 67 ~~~~lfV---gnL~~~~te~~L~~~F~-~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng--~~~~Gr 140 (229)
T 3q2s_C 67 KRIALYI---GNLTWWTTDEDLTEAVH-SLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPK--RELHGQ 140 (229)
T ss_dssp --CEEEE---ESCCTTCCHHHHHHHHH-TTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTT--SCBTTB
T ss_pred CccEEEE---eCCCCCCCHHHHHHHHH-HHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC--CeECCE
Confidence 6678988 8988 99999999998 599313555544 34 788999999999999999998875332 258999
Q ss_pred eeEEEeccc
Q 045525 274 DIRVRRFVP 282 (295)
Q Consensus 274 ~vWarky~p 282 (295)
.|-++...|
T Consensus 141 ~l~V~~a~~ 149 (229)
T 3q2s_C 141 NPVVTPVNK 149 (229)
T ss_dssp CCEEEECCH
T ss_pred EeEEEECCC
Confidence 998887654
No 166
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=6.1e-05 Score=59.45 Aligned_cols=81 Identities=12% Similarity=0.197 Sum_probs=59.5
Q ss_pred CceEEEEccCCc------ccCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCc
Q 045525 200 DRTLFATFSKGH------PISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGK 273 (295)
Q Consensus 200 ~Rt~FvTFS~G~------Pvse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk 273 (295)
.+.+-|.+.... -+++++|+++|. +|| + |+.|.| .++.++||+|.|.+.+.....+.... .+.|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~-~~G-~-V~~v~i--~~~~rGfaFVeF~~~~~A~~Ai~~~~----~~~g~ 80 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQ-KYG-E-VLNLVL--SSKKPGTAVVEFATVKAAELAVQNEV----GLVDN 80 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHH-TTS-C-EEEEEE--ESSSSSEEEEEESCHHHHHHHHHTCC----BCSSS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHH-hcC-C-EEEEEE--ccCCCCEEEEEECCHHHHHHHHHhcC----CCCCC
Confidence 456667776532 399999999999 599 4 666666 36889999999999998888877533 24688
Q ss_pred eeEEEecccCCCCCCC
Q 045525 274 DIRVRRFVPKPAPVAS 289 (295)
Q Consensus 274 ~vWarky~pk~~~~~~ 289 (295)
.+=++-..++++....
T Consensus 81 ~l~V~~a~~~~~~~~~ 96 (100)
T 2d9o_A 81 PLKISWLEGQPQDASG 96 (100)
T ss_dssp BCEEECSSCCCCCCSS
T ss_pred eEEEEEccCCCCCCCC
Confidence 8877666666554444
No 167
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=97.99 E-value=1.9e-05 Score=69.88 Aligned_cols=80 Identities=20% Similarity=0.230 Sum_probs=62.2
Q ss_pred CCCCceEEEEccCCcc--cCHHHHH----HHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEE
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELF----EFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDI 270 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~----efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~I 270 (295)
.+..|+||| +|.| ++++||+ ++|. +|| -|+.|.+-+.++..+||+|.|.+.+.....+..-+. ..|
T Consensus 6 ~~~~~~l~V---~nlp~~~~~~~l~~~L~~~F~-~~G--~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~ 77 (282)
T 3pgw_A 6 TRPNHTIYI---NNLNEKIKKDELKKSLYAIFS-QFG--QILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQG--FPF 77 (282)
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHHHHh-ccC--CeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcC--Cee
Confidence 456799999 9999 9999977 8998 599 555566655688899999999999998887753221 478
Q ss_pred CCceeEEEecccCC
Q 045525 271 HGKDIRVRRFVPKP 284 (295)
Q Consensus 271 ngk~vWarky~pk~ 284 (295)
+|+.+.++...++.
T Consensus 78 ~g~~l~v~~a~~~~ 91 (282)
T 3pgw_A 78 YDKPMRIQYAKTDS 91 (282)
T ss_pred CCcEEEEEEeccCc
Confidence 99999877665544
No 168
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.99 E-value=1.4e-05 Score=62.95 Aligned_cols=66 Identities=20% Similarity=0.283 Sum_probs=52.3
Q ss_pred CCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHh---CCCCcccEEECC
Q 045525 198 DTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLIL---GENELKQFDIHG 272 (295)
Q Consensus 198 ~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL---~g~~~~kf~Ing 272 (295)
.+.+++|| ++.| ++++||+++|. +|| -|+.+.|- ...+||+|.|.+.+.....+ +|. .++|
T Consensus 8 ~~~~~l~V---~nLp~~~te~~L~~~F~-~~G--~i~~v~i~---~~~g~afV~f~~~~~A~~Ai~~l~g~-----~~~g 73 (111)
T 1whx_A 8 RSKTVILA---KNLPAGTLAAEIQETFS-RFG--SLGRVLLP---EGGITAIVEFLEPLEARKAFRHLAYS-----KFHH 73 (111)
T ss_dssp EEEEEEEE---ESCCTTCCHHHHHHHHH-TTS--CEEEEECC---SSSSCEEEEESCHHHHHHHHHHHTTC-----BSSS
T ss_pred CCCCEEEE---eCCCCCCCHHHHHHHHH-hcC--CEEEEEEe---CCCCEEEEEeCCHHHHHHHHHHhCCC-----EECC
Confidence 35679998 8888 99999999999 599 56777773 46789999999998877665 453 4789
Q ss_pred ceeEE
Q 045525 273 KDIRV 277 (295)
Q Consensus 273 k~vWa 277 (295)
+++-+
T Consensus 74 ~~l~V 78 (111)
T 1whx_A 74 VPLYL 78 (111)
T ss_dssp SBCEE
T ss_pred eEEEE
Confidence 98843
No 169
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=97.97 E-value=1.9e-05 Score=69.87 Aligned_cols=84 Identities=12% Similarity=0.030 Sum_probs=65.5
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEE-eec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIK-MGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~-M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
+..++++|| +|.| +|++||+++|.. || . |+.+. +.+ ++++.+||+|.|.+++.....+..-+. ..|+
T Consensus 92 ~~~~~~l~v---~nlp~~~t~~~l~~~f~~-~G-~-i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~--~~~~ 163 (284)
T 3smz_A 92 QPTDALLCV---ANLPPSLTQQQFEELVRP-FG-S-LERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLG--KPLG 163 (284)
T ss_dssp CCCSCEEEE---ESCCTTCCHHHHHHHHGG-GS-C-EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT--CEET
T ss_pred cCCCCEEEE---cCCCCcCCHHHHHHHHHh-cC-C-eeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCC--CEeC
Confidence 445689999 8888 999999999995 99 5 55554 433 788899999999999998877743111 3689
Q ss_pred CceeEEEecccCCCCCC
Q 045525 272 GKDIRVRRFVPKPAPVA 288 (295)
Q Consensus 272 gk~vWarky~pk~~~~~ 288 (295)
|+.+.++...|+...+.
T Consensus 164 g~~i~v~~a~~~~~~~~ 180 (284)
T 3smz_A 164 PRTLYVHWTDAGQLTPA 180 (284)
T ss_dssp TEECEEEECCGGGCCTT
T ss_pred CcEEEEEECCCCCCCcc
Confidence 99999998888766544
No 170
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=97.96 E-value=2.3e-05 Score=62.76 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=58.0
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEee-c--cCCCCceEEEEecCHHHHHHHhCCCCcccEEE
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMG-C--CRDQSLYARVIVRSPAYITLILGENELKQFDI 270 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~-~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~I 270 (295)
...+.+++|| +|.| ++++||+++|. .|| .|+.+.+. + ++.+.+||+|.|.+.+....++..-+. ..+
T Consensus 83 ~~~~~~~l~v---~nl~~~~t~~~l~~~f~-~~G--~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~ 154 (166)
T 3md3_A 83 SSDDTFNLFV---GDLNVNVDDETLRNAFK-DFP--SYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQG--QDL 154 (166)
T ss_dssp CCTTCEEEEE---ESCCTTCCHHHHHHHHT-TST--TEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTT--CEE
T ss_pred CCCCCceEEE---CCCCCCCCHHHHHHHHh-ccC--CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--Ccc
Confidence 3556789999 7888 99999999997 599 45555554 3 688899999999999998877653211 257
Q ss_pred CCceeEEEe
Q 045525 271 HGKDIRVRR 279 (295)
Q Consensus 271 ngk~vWark 279 (295)
+|+.+-+.-
T Consensus 155 ~g~~i~v~~ 163 (166)
T 3md3_A 155 NGRPLRINW 163 (166)
T ss_dssp TTEECEEEE
T ss_pred CCcEEEEEe
Confidence 999986654
No 171
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.94 E-value=3.1e-05 Score=60.73 Aligned_cols=85 Identities=15% Similarity=0.173 Sum_probs=61.4
Q ss_pred CCCCCceEEEEccCCc--cc-----------CHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCC
Q 045525 196 DADTDRTLFATFSKGH--PI-----------SRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGE 262 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~--Pv-----------se~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g 262 (295)
-|...||++| ++. |- +++||+++|. +|| . |+.|.|.+ ..+.+||+|.|.+++.....+..
T Consensus 11 ~~~~s~~l~l---~Nl~~~~~~~~~~~~~~~~e~~l~~~f~-~~G-~-v~~v~i~~-~~~~G~afV~f~~~~~A~~Ai~~ 83 (112)
T 2dit_A 11 RMRHERVVII---KNMFHPMDFEDDPLVLNEIREDLRVECS-KFG-Q-IRKLLLFD-RHPDGVASVSFRDPEEADYCIQT 83 (112)
T ss_dssp CCCSCCEEEE---ESSCCTTHHHHCSHHHHHHHHHHHHHGG-GTS-C-CSEEEEET-TCTTCEEEEECSCHHHHHHHHHH
T ss_pred CCCCceEEEE---EcCCCHHHhccCHHHHHHHHHHHHHHHH-ccC-C-EeEEEEec-CCCCEEEEEEECCHHHHHHHHHH
Confidence 3556789988 444 21 2689999998 599 4 55566644 45789999999999887766643
Q ss_pred CCcccEEECCceeEEEecccCCCCCCC
Q 045525 263 NELKQFDIHGKDIRVRRFVPKPAPVAS 289 (295)
Q Consensus 263 ~~~~kf~Ingk~vWarky~pk~~~~~~ 289 (295)
-+. ..++|+.+-+..+.|+......
T Consensus 84 lng--~~~~gr~l~v~~a~~~~~~~~~ 108 (112)
T 2dit_A 84 LDG--RWFGGRQITAQAWDGTTDYQSG 108 (112)
T ss_dssp STT--CEETTEECEEEECCSCCCSSCC
T ss_pred cCC--CEECCcEEEEEEeCCCCCcccC
Confidence 222 2579999999999998765433
No 172
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=97.93 E-value=1.5e-05 Score=65.22 Aligned_cols=79 Identities=23% Similarity=0.159 Sum_probs=63.8
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCc
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGK 273 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk 273 (295)
.....+++|| +|.| ++++||+++|.+ || -|..+ ...++..+||+|.|.+.+....++..-+ ...|+|+
T Consensus 95 ~~~~~~~l~v---~nlp~~~t~~~l~~~F~~-~g--~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~g~ 164 (175)
T 1fje_B 95 KVRAARTLLA---KNLSFNITEDELKEVFED-AL--EIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQ--GAEIDGR 164 (175)
T ss_dssp TTGGGGEEEE---ESCCSSCCHHHHHHHCTT-CS--EEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHT--EEEETTE
T ss_pred ccccCCEEEE---eCCCCCCCHHHHHHHHHh-cC--eEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhC--CCEECCe
Confidence 3456789999 8888 999999999995 99 44444 3378999999999999999888876422 2578999
Q ss_pred eeEEEecccCC
Q 045525 274 DIRVRRFVPKP 284 (295)
Q Consensus 274 ~vWarky~pk~ 284 (295)
.+-++-..||+
T Consensus 165 ~i~v~~a~~k~ 175 (175)
T 1fje_B 165 SVSLYYTGEKG 175 (175)
T ss_dssp EEEEEECSSCC
T ss_pred EEEEEecCCCC
Confidence 99999888873
No 173
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=97.90 E-value=3.2e-05 Score=62.72 Aligned_cols=75 Identities=15% Similarity=0.195 Sum_probs=58.1
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
+.+.+++|| +|.| ++++||+++|. +|| + |+.+.+.. ++++.+||+|.|.+++....++..-+ ...++
T Consensus 91 ~~~~~~l~v---~nlp~~~t~~~l~~~f~-~~G-~-v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~--g~~~~ 162 (172)
T 2g4b_A 91 LPGAHKLFI---GGLPNYLNDDQVKELLT-SFG-P-LKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLN--GMQLG 162 (172)
T ss_dssp CTTTTCEEE---ECCCTTCCHHHHHHHHH-TTS-C-EEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHT--TCEET
T ss_pred CCCCCEEEE---EcCCCcCCHHHHHHHHH-hcC-C-ceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcC--CCEEC
Confidence 455799999 8888 99999999999 599 4 56665544 67789999999999998777765311 13689
Q ss_pred CceeEEEe
Q 045525 272 GKDIRVRR 279 (295)
Q Consensus 272 gk~vWark 279 (295)
|+.+-++.
T Consensus 163 g~~l~V~~ 170 (172)
T 2g4b_A 163 DKKLLVQR 170 (172)
T ss_dssp TEECEEEE
T ss_pred CeEEEEEe
Confidence 99887664
No 174
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.85 E-value=3.9e-05 Score=68.19 Aligned_cols=76 Identities=12% Similarity=0.223 Sum_probs=56.6
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEe-eccCCCCceEEEEecCHHHHHHHhCCCCcccEEECC
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKM-GCCRDQSLYARVIVRSPAYITLILGENELKQFDIHG 272 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M-~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ing 272 (295)
-+.+.||+|| +|.| +|++||+++|.+ || . |+.|.| .+.+...+||+|.|.+++.....|. . ....++|
T Consensus 37 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G-~-i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~--~~~~~~g 107 (292)
T 2ghp_A 37 RNRELTTVLV---KNLPKSYNQNKVYKYFKH-CG-P-IIHVDVADSLKKNFRFARIEFARYDGALAAIT-K--THKVVGQ 107 (292)
T ss_dssp -----CEEEE---EEECTTCCHHHHHHHHGG-GS-C-EEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-T--TTCEETT
T ss_pred cCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cC-C-eEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-h--CCcEeCC
Confidence 4667899999 8999 999999999995 99 5 555555 4444468999999999999999984 2 3357899
Q ss_pred ceeEEEec
Q 045525 273 KDIRVRRF 280 (295)
Q Consensus 273 k~vWarky 280 (295)
+.+.+...
T Consensus 108 ~~i~v~~~ 115 (292)
T 2ghp_A 108 NEIIVSHL 115 (292)
T ss_dssp EECEEEEC
T ss_pred cEEEEEEC
Confidence 99988653
No 175
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=97.84 E-value=3.1e-05 Score=57.86 Aligned_cols=73 Identities=15% Similarity=0.171 Sum_probs=56.2
Q ss_pred CCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCcee
Q 045525 198 DTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGKDI 275 (295)
Q Consensus 198 ~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~v 275 (295)
...+++|| +|.| ++++|++++|.+ |+ |+.+.+. +..+||+|.|.+++..+..+...+ ...++|+.+
T Consensus 3 ~~~~~l~V---~nLp~~~t~~~l~~~F~~-~~---v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~--g~~~~g~~l 70 (88)
T 1wg1_A 3 SGSSGILV---KNLPQDSNCQEVHDLLKD-YD---LKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFH--QYSFRGKDL 70 (88)
T ss_dssp CCCCCEEE---ESCCSSCCHHHHHHHTCS-SC---CCCEEEE---GGGTEEEECCSCHHHHHHHHHHHT--TEEETTEEE
T ss_pred CCCCEEEE---eCCCCCCCHHHHHHHHhh-CC---eEEEEEe---CCCcEEEEEECCHHHHHHHHHHhC--CCeECCcEE
Confidence 45789999 8998 999999999996 53 5555552 677899999999998887766322 246899999
Q ss_pred EEEeccc
Q 045525 276 RVRRFVP 282 (295)
Q Consensus 276 Warky~p 282 (295)
-++....
T Consensus 71 ~V~~a~~ 77 (88)
T 1wg1_A 71 IVQLQPT 77 (88)
T ss_dssp EEEECCC
T ss_pred EEEEcCC
Confidence 8776533
No 176
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=97.83 E-value=2.3e-05 Score=61.96 Aligned_cols=76 Identities=17% Similarity=0.143 Sum_probs=50.9
Q ss_pred CCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCce-
Q 045525 198 DTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGKD- 274 (295)
Q Consensus 198 ~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~- 274 (295)
....+||| +|.| ++++||+++|. +|| + |+.+.|... +||+|.|.+++....++..-+ ...|+|+.
T Consensus 14 r~~~~l~V---~nLp~~~t~~~l~~~F~-~~G-~-v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~--g~~~~gr~~ 81 (115)
T 3beg_B 14 RSENRVVV---SGLPPSGSWQDLKDHMR-EAG-D-VCYADVYRD----GTGVVEFVRKEDMTYAVRKLD--NTKFRSHEG 81 (115)
T ss_dssp ---CCEEE---EECCSSCCTTHHHHHHG-GGS-C-EEEEEECTT----SEEEEEESSHHHHHHHHHHHT--TCBCCCTTS
T ss_pred CCCcEEEE---eCCCCCCCHHHHHHHHH-hcC-C-eEEEEEecC----CEEEEEECCHHHHHHHHHHhC--CCEECCcEe
Confidence 35578888 8888 99999999999 599 4 566666331 999999999988777665211 12578887
Q ss_pred ----eEEEecccCCC
Q 045525 275 ----IRVRRFVPKPA 285 (295)
Q Consensus 275 ----vWarky~pk~~ 285 (295)
+-++...|+.+
T Consensus 82 ~~~~i~v~~~~~~~~ 96 (115)
T 3beg_B 82 ETAYIRVKVDGPRSP 96 (115)
T ss_dssp CCCBCEEEECC----
T ss_pred eeEEEEeccCCCCCC
Confidence 55555555443
No 177
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.80 E-value=7.9e-05 Score=66.20 Aligned_cols=80 Identities=16% Similarity=0.184 Sum_probs=63.5
Q ss_pred CCCCCceEEEEccCCcc---cCHHHHHHHHHHhhCCCceeEEEeec--c--CCCCceEEEEecCHHHHHHHhCCCCcccE
Q 045525 196 DADTDRTLFATFSKGHP---ISRAELFEFFIRRYGEDCVEDIKMGC--C--RDQSLYARVIVRSPAYITLILGENELKQF 268 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P---vse~Ei~efF~~~yG~~cve~v~M~~--~--~~qplfarivf~s~~~v~~vL~g~~~~kf 268 (295)
.....+++|| +|.| +++++|+++|.+ || -|+.|.+-. . +++.+||+|.|.+.+....++ .-+ ..
T Consensus 206 ~~~~~~~l~v---~nlp~~~~t~~~l~~~F~~-~G--~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~--g~ 276 (292)
T 2ghp_A 206 ATLEGREIMI---RNLSTELLDENLLRESFEG-FG--SIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMN--RS 276 (292)
T ss_dssp -CCTTTEEEE---EEECTTTCCHHHHHHHHGG-GS--CEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGT--TE
T ss_pred cCCCCceEEE---ECCCcccCCHHHHHHHHhc-cC--CeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hhc--CC
Confidence 3456789999 7888 899999999995 99 566666654 3 788999999999999988887 432 34
Q ss_pred EECCceeEEEecccCC
Q 045525 269 DIHGKDIRVRRFVPKP 284 (295)
Q Consensus 269 ~Ingk~vWarky~pk~ 284 (295)
.|+|+.+-+....||.
T Consensus 277 ~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 277 LLGNREISVSLADKKP 292 (292)
T ss_dssp EETTEEEEEEECCCCC
T ss_pred EECCcEEEEEEecCCC
Confidence 6899999999888873
No 178
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=97.76 E-value=0.00011 Score=63.86 Aligned_cols=79 Identities=22% Similarity=0.280 Sum_probs=60.3
Q ss_pred CCCCCCceEEEEccCCcc---cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 195 NDADTDRTLFATFSKGHP---ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~P---vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
..+.+.+|+|| +|.| ++++||+++|. +|| + |+.|.+.. ...+||+|.|.+++....++...+. ..++
T Consensus 29 ~~~~~~~~l~V---~nLp~~~~te~~L~~~F~-~~G-~-i~~v~i~~--~~~g~afV~F~~~~~A~~Ai~~l~g--~~~~ 98 (229)
T 2adc_A 29 LAGAGNSVLLV---SNLNPERVTPQSLFILFG-VYG-D-VQRVKILF--NKKENALVQMADGNQAQLAMSHLNG--HKLH 98 (229)
T ss_dssp GGCCCCSEEEE---ESCCTTTCCHHHHHHHHH-HHT-C-EEEEEECC--TTSCCEEEEESCHHHHHHHHHHHTT--CBCS
T ss_pred CCCCCCCEEEE---eCCCcccCCHHHHHHHHH-hCC-C-eEEEEEEE--CCCCEEEEEECCHHHHHHHHHHhCC--CeEC
Confidence 44667899999 8887 59999999999 599 4 66776643 2378999999999998877653111 2579
Q ss_pred CceeEEEecccC
Q 045525 272 GKDIRVRRFVPK 283 (295)
Q Consensus 272 gk~vWarky~pk 283 (295)
|+.+.+....++
T Consensus 99 g~~l~v~~a~~~ 110 (229)
T 2adc_A 99 GKPIRITLSKHQ 110 (229)
T ss_dssp SSBCEEECCSCC
T ss_pred CeEEEEEEecCc
Confidence 999988776654
No 179
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=97.74 E-value=3.1e-05 Score=68.54 Aligned_cols=83 Identities=12% Similarity=0.028 Sum_probs=63.7
Q ss_pred CCCCceEEEEccCCcc--c-CHHHHHHHHHHhhCCCceeEEEeec-cCCCCceEEEEecCHHHHHHHhCCCCcccEEECC
Q 045525 197 ADTDRTLFATFSKGHP--I-SRAELFEFFIRRYGEDCVEDIKMGC-CRDQSLYARVIVRSPAYITLILGENELKQFDIHG 272 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--v-se~Ei~efF~~~yG~~cve~v~M~~-~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ing 272 (295)
....+++|| +|.| + ++++|+++|. .|| .+.....+.+ .+++.+||+|.|.+.+....++..-+. ..++|
T Consensus 181 ~~~~~~l~v---~nlp~~~~~~~~l~~~f~-~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g 253 (284)
T 3smz_A 181 LLHSRCLCV---DRLPPGFNDVDALCRALS-AVH-SPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADG--LSLGG 253 (284)
T ss_dssp TTSCSEEEE---ECCCTTCCCHHHHHHHTC-SSS-CCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTT--CEETT
T ss_pred cCCccEEEE---ecCCcccCCHHHHHHHhh-CCC-CeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCC--CccCC
Confidence 346789998 8999 5 8999999999 599 5444444544 788899999999999987777553111 25799
Q ss_pred ceeEEEecccCCCC
Q 045525 273 KDIRVRRFVPKPAP 286 (295)
Q Consensus 273 k~vWarky~pk~~~ 286 (295)
+.+.+..+.|+..+
T Consensus 254 ~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 254 SHLRVSFCAPGPPG 267 (284)
T ss_dssp EECEEEECCSSSCH
T ss_pred eEEEEEEecCCCcc
Confidence 99999999888653
No 180
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=97.73 E-value=2.6e-05 Score=63.06 Aligned_cols=59 Identities=19% Similarity=0.172 Sum_probs=48.9
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhC
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILG 261 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~ 261 (295)
+...+++|| +|.| +|++||+++|. +|| + |+.+.+.. .+++.+||+|.|.+.+....++.
T Consensus 92 ~~~~~~l~v---~nl~~~~t~~~l~~~F~-~~G-~-i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 3nmr_A 92 AVEDRKLFI---GMISKKCTENDIRVMFS-SFG-Q-IEECRILRGPDGLSRGCAFVTFTTRAMAQTAIK 154 (175)
T ss_dssp CGGGSEEEE---ESCCTTCCHHHHHHHHG-GGS-C-EEEEEEEECTTSCEEEEEEEEESSHHHHHHHHH
T ss_pred cCCCCeEEE---cCCCCcCCHHHHHHHHH-hCC-C-EEEEEEEECCCCCEEEEEEEEECCHHHHHHHHH
Confidence 446789999 8888 99999999998 599 4 66666654 67778999999999999877764
No 181
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=97.72 E-value=9e-05 Score=65.52 Aligned_cols=71 Identities=13% Similarity=0.158 Sum_probs=53.2
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEEC-Cc
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIH-GK 273 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~In-gk 273 (295)
....+++|| +|.| ++++||+++|. +|| -|+.|.+-. ...+||+|.|.+.+.....+..-+. ..|+ |+
T Consensus 204 ~~~~~~l~v---~nl~~~~~~~~l~~~F~-~~G--~i~~v~~~~--~~~g~afV~f~~~~~A~~A~~~l~g--~~~~~g~ 273 (282)
T 3pgw_A 204 NPPNHILFL---TNLPEETNELMLSMLFN-QFP--GFKEVRLVP--GRHDIAFVEFDNEVQAGAARDALQG--FKITQNN 273 (282)
T ss_pred CCCCCEEEE---eCCCCcCCHHHHHHHHH-hcC--CeEEEEEec--CCCcEEEEEeCCHHHHHHHHHHcCC--cEeCCCC
Confidence 446789999 8888 99999999999 499 556666643 2257999999999998777664322 3566 88
Q ss_pred eeEE
Q 045525 274 DIRV 277 (295)
Q Consensus 274 ~vWa 277 (295)
.+-+
T Consensus 274 ~l~v 277 (282)
T 3pgw_A 274 AMKI 277 (282)
T ss_pred EEEE
Confidence 8744
No 182
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=97.70 E-value=3.6e-05 Score=62.01 Aligned_cols=74 Identities=18% Similarity=0.153 Sum_probs=54.6
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
+...+++|| +|.| ++++||+++|. +|| .|+.+.+.. .+++.+||+|.|.+.+.....+..-+.. .++
T Consensus 86 ~~~~~~l~v---~nl~~~~t~~~l~~~f~-~~G--~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~ 157 (168)
T 1b7f_A 86 SIKDTNLYV---TNLPRTITDDQLDTIFG-KYG--SIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNV--IPE 157 (168)
T ss_dssp TTTTCEEEE---ESCCTTCCHHHHHHHHT-SSS--CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC--CCT
T ss_pred cCCCCCEEE---eCCCCCCCHHHHHHhhh-cCC--cEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCC--Eec
Confidence 446689999 8888 99999999998 599 456665544 5777899999999999987776532222 455
Q ss_pred C--ceeEEE
Q 045525 272 G--KDIRVR 278 (295)
Q Consensus 272 g--k~vWar 278 (295)
| +.+-++
T Consensus 158 g~~~~l~V~ 166 (168)
T 1b7f_A 158 GGSQPLSVR 166 (168)
T ss_dssp TCSSCCEEE
T ss_pred CCCeEEEEE
Confidence 5 666544
No 183
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=97.69 E-value=4.1e-05 Score=67.97 Aligned_cols=84 Identities=11% Similarity=-0.011 Sum_probs=62.2
Q ss_pred CCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec-cCCCCceEEEEecCHHHHHHHhCCC--CcccEEECC
Q 045525 198 DTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC-CRDQSLYARVIVRSPAYITLILGEN--ELKQFDIHG 272 (295)
Q Consensus 198 ~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~-~~~qplfarivf~s~~~v~~vL~g~--~~~kf~Ing 272 (295)
.+.+++|| +|.| +|+++|+++|. .|| ++.....+.+ ++++.+||+|.|.+.+....++..- ....+...|
T Consensus 94 ~~~~~l~v---~nl~~~~t~~~l~~~F~-~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 168 (261)
T 3sde_A 94 THGAALTV---KNLSPVVSNELLEQAFS-QFG-PVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTP 168 (261)
T ss_dssp CCSSEEEE---ESCCTTCCHHHHHHHHG-GGS-CEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSC
T ss_pred ccCCcccc---cCCCCCCCHHHHHHHHH-hcC-CeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCC
Confidence 45678998 8888 99999999998 599 5544444444 7888999999999999987777642 122233458
Q ss_pred ceeEEEecccCCCC
Q 045525 273 KDIRVRRFVPKPAP 286 (295)
Q Consensus 273 k~vWarky~pk~~~ 286 (295)
+.+.++...+++..
T Consensus 169 r~i~v~~~~~~~~~ 182 (261)
T 3sde_A 169 RPVIVEPMEQFDDE 182 (261)
T ss_dssp CBCEEEECCCEESS
T ss_pred ceEEEeeccccCcc
Confidence 88988877766443
No 184
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=97.66 E-value=7.2e-05 Score=66.39 Aligned_cols=76 Identities=16% Similarity=0.258 Sum_probs=59.0
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCc
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGK 273 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk 273 (295)
...+.+++|| +|.| +|+++|+++|. .|| -|..|.| ++..+||+|.|.+.+....++..-+ ...|+|+
T Consensus 18 ~~~~~~~l~V---~nLp~~~te~~l~~~F~-~~G--~i~~v~i---~~~kg~afV~f~~~~~A~~A~~~l~--g~~i~g~ 86 (261)
T 3sde_A 18 TYTQRCRLFV---GNLPTDITEEDFKRLFE-RYG--EPSEVFI---NRDRGFGFIRLESRTLAEIAKAELD--GTILKSR 86 (261)
T ss_dssp SSCGGGEEEE---ESCCTTCCHHHHHHHTG-GGC--CCSEEEE---ETTTTEEEEECSSHHHHHHHHHHHT--TCEETTE
T ss_pred CCCCCCEEEE---ECCCCCCCHHHHHHHHH-hcC--CEEEEEE---eCCCcEEEEEECCHHHHHHHHHHcC--CcEECCc
Confidence 4567789999 8998 99999999998 599 4666776 3457999999999999887764211 1257999
Q ss_pred eeEEEeccc
Q 045525 274 DIRVRRFVP 282 (295)
Q Consensus 274 ~vWarky~p 282 (295)
.+-++...|
T Consensus 87 ~l~v~~a~~ 95 (261)
T 3sde_A 87 PLRIRFATH 95 (261)
T ss_dssp ECEEEECCC
T ss_pred eeEeeeccc
Confidence 998876554
No 185
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=97.58 E-value=0.00015 Score=60.68 Aligned_cols=75 Identities=23% Similarity=0.308 Sum_probs=56.9
Q ss_pred CCceEEEEccCCcc---cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCcee
Q 045525 199 TDRTLFATFSKGHP---ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGKDI 275 (295)
Q Consensus 199 d~Rt~FvTFS~G~P---vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~v 275 (295)
+.+++|| +|.| +++++|+++|. +|| + |+.+.+.. ...+||+|.|.+++.....+..-+. ..++|+.+
T Consensus 2 ~~~~l~v---~nlp~~~~~~~~l~~~F~-~~G-~-i~~v~i~~--~~~g~afV~f~~~~~a~~A~~~l~~--~~~~g~~l 71 (198)
T 1qm9_A 2 GNSVLLV---SNLNPERVTPQSLFILFG-VYG-D-VQRVKILF--NKKENALVQMADGNQAQLAMSHLNG--HKLHGKPI 71 (198)
T ss_dssp CCCEEEE---ECCCSSSCCHHHHHHHHH-TTC-C-CSEEECST--TCSSCCEEECTTTHHHHHHHHHHTT--CCCSSCCC
T ss_pred CCcEEEE---eCCCcccCCHHHHHHHHH-hcC-C-EEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCC--CeecCeEE
Confidence 5689999 8887 59999999999 599 4 77777643 3378999999999998877642111 24699999
Q ss_pred EEEecccC
Q 045525 276 RVRRFVPK 283 (295)
Q Consensus 276 Warky~pk 283 (295)
-+....++
T Consensus 72 ~v~~a~~~ 79 (198)
T 1qm9_A 72 RITLSKHQ 79 (198)
T ss_dssp EEEECCCC
T ss_pred EEEEecCC
Confidence 88766544
No 186
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.50 E-value=0.00061 Score=55.36 Aligned_cols=74 Identities=16% Similarity=0.158 Sum_probs=50.2
Q ss_pred CCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccE-EE--CCc
Q 045525 199 TDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQF-DI--HGK 273 (295)
Q Consensus 199 d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf-~I--ngk 273 (295)
..+++||. -+|.| ++|++++++|.+ || -|+.|.|.. .++||+|.|.+++..+..+..-+...+ .+ +|+
T Consensus 24 pt~~L~V~-Ng~L~~~~te~~L~~~F~~-fG--~v~~v~i~~---~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 24 ATQSLVVA-NGGLGNGVSRNQLLPVLEK-CG--LVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp CCSEEEEE-TCTGGGTCCHHHHHHHHHH-HS--CEEEEECCT---TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCEEEEE-CCCCCCCCCHHHHHHHHHh-cC--CeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 35788884 23454 999999999995 99 567788832 468999999998876665543322222 11 466
Q ss_pred eeEEEe
Q 045525 274 DIRVRR 279 (295)
Q Consensus 274 ~vWark 279 (295)
.+++.-
T Consensus 97 ~l~v~~ 102 (114)
T 2cq2_A 97 TLYLNF 102 (114)
T ss_dssp ECEEEE
T ss_pred EEEEEe
Confidence 666543
No 187
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=97.50 E-value=9.2e-05 Score=59.20 Aligned_cols=70 Identities=14% Similarity=0.168 Sum_probs=51.6
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
+...+++|| +|.| ++++||+++|. +|| + |+.+.+.. +++..+||+|.|.+++....++..-+.. .++
T Consensus 85 ~~~~~~l~v---~nl~~~~t~~~l~~~f~-~~G-~-i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~--~~~ 156 (167)
T 1fxl_A 85 SIRDANLYV---SGLPKTMTQKELEQLFS-QYG-R-IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ--KPS 156 (167)
T ss_dssp GGTTCEEEE---ESCCTTCCHHHHHHHHG-GGS-C-EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC--CCT
T ss_pred cCCCCcEEE---CCCCCcCCHHHHHHHHH-hcC-C-EeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC--ccC
Confidence 345688998 8888 99999999999 599 4 55555433 6778999999999999877775421111 467
Q ss_pred Cce
Q 045525 272 GKD 274 (295)
Q Consensus 272 gk~ 274 (295)
|+.
T Consensus 157 g~~ 159 (167)
T 1fxl_A 157 GAT 159 (167)
T ss_dssp TCS
T ss_pred CCc
Confidence 764
No 188
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=97.45 E-value=0.00045 Score=59.97 Aligned_cols=70 Identities=21% Similarity=0.290 Sum_probs=54.0
Q ss_pred CCCceEEEEccCCcc---cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHH---hCCCCcccEEEC
Q 045525 198 DTDRTLFATFSKGHP---ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLI---LGENELKQFDIH 271 (295)
Q Consensus 198 ~d~Rt~FvTFS~G~P---vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~v---L~g~~~~kf~In 271 (295)
.+.+|||| ++.| ++++++++.|. .|| + |.+|.+- ...++||+|.|.+++..+.. |+|. .++
T Consensus 2 ~~~~~l~V---~nL~~~~~~~~~L~~~F~-~~G-~-v~~v~i~--~~~~g~afV~f~~~~~A~~Ai~~lng~-----~~~ 68 (205)
T 3tyt_A 2 ADSPVLMV---YGLDQSKMNCDRVFNVFC-LYG-N-VEKVKFM--KSKPGAAMVEMADGYAVDRAITHLNNN-----FMF 68 (205)
T ss_dssp CCCSEEEE---ECCCTTTCCHHHHHHHHT-TTS-C-EEEEEEC--TTSTTCEEEEESSHHHHHHHHHHHTTC-----EET
T ss_pred CCCCEEEE---eCCCcccCCHHHHHHHHH-hcC-C-eEEEEEe--cCCCCEEEEEECCHHHHHHHHHHhCCC-----EEC
Confidence 35679999 8887 99999999998 599 5 4555552 33579999999999887765 4564 689
Q ss_pred CceeEEEec
Q 045525 272 GKDIRVRRF 280 (295)
Q Consensus 272 gk~vWarky 280 (295)
||.+-+...
T Consensus 69 g~~l~v~~s 77 (205)
T 3tyt_A 69 GQKMNVCVS 77 (205)
T ss_dssp TEECEEEEC
T ss_pred CceEEEEEc
Confidence 999877744
No 189
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=97.38 E-value=0.00013 Score=66.25 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=55.2
Q ss_pred CCCCceEEEEccCCcc--c---------CHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCc
Q 045525 197 ADTDRTLFATFSKGHP--I---------SRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENEL 265 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--v---------se~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~ 265 (295)
..+.||||| +|.| + +|++|+++|.+ || -|+.|.|- ...+||+|.|.+.+.....+...+.
T Consensus 131 ~~~~rtLfV---gnL~~~~~~~~~~~~~tEe~L~~~F~~-fG--~I~~v~v~---~~kG~AFV~F~~~~~Ae~A~~am~g 201 (240)
T 3u1l_A 131 RKKNKTLYV---GGIDGALNSKHLKPAQIESRIRFVFSR-LG--DIDRIRYV---ESKNCGFVKFKYQANAEFAKEAMSN 201 (240)
T ss_dssp CCCCCEEEE---ECTTGGGTTCCCCHHHHHHHHHHHHHT-TS--CEEEEEEE---GGGTEEEEEESSHHHHHHHHHHHTT
T ss_pred ccCCceeec---CCCChhhhcccccccCcHHHHHHHHHc-cC--CEEEEEEE---CCCCEEEEEeCCHHHHHHHHHHhCC
Confidence 457899999 7887 4 69999999995 99 56777663 3578999999998886665443222
Q ss_pred ccEEE----------CCceeEEEecccCC
Q 045525 266 KQFDI----------HGKDIRVRRFVPKP 284 (295)
Q Consensus 266 ~kf~I----------ngk~vWarky~pk~ 284 (295)
..+.| +|+.+=++-..+++
T Consensus 202 ~~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 202 QTLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred CEEeccccccccccCCCCEEEEEEccCCC
Confidence 23333 78888666555543
No 190
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=97.28 E-value=0.00059 Score=53.78 Aligned_cols=61 Identities=13% Similarity=0.043 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHhhCCCceeEEEee-c---cCCCCceEEEEecCHHHHHHH---hCCCCcccEEECCceeEEEeccc
Q 045525 214 SRAELFEFFIRRYGEDCVEDIKMG-C---CRDQSLYARVIVRSPAYITLI---LGENELKQFDIHGKDIRVRRFVP 282 (295)
Q Consensus 214 se~Ei~efF~~~yG~~cve~v~M~-~---~~~qplfarivf~s~~~v~~v---L~g~~~~kf~Ingk~vWarky~p 282 (295)
+++||++.|. +|| . |++|.+- + ++++.+||+|.|.+++..... |+|. .++||.+-+.-+.+
T Consensus 26 ~~~dl~~~f~-~~G-~-V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~-----~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 26 LEVETKEECE-KYG-K-VGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGR-----YFGGRVVKACFYNL 93 (105)
T ss_dssp CHHHHHHHGG-GGS-C-EEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTC-----EETTEECEEEECCH
T ss_pred HHHHHHHHHH-hcC-C-EEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCC-----EECCcEEEEEEcCH
Confidence 6899999998 699 5 5555553 3 257899999999998875544 5664 57999998887754
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=97.28 E-value=0.00067 Score=56.64 Aligned_cols=77 Identities=19% Similarity=0.149 Sum_probs=56.8
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEEC-Cc
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIH-GK 273 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~In-gk 273 (295)
.+..+++|| +|.| +++++|+++|.+ || --|+.+.+-. ...+||+|.|.+++....++..-+.. .|+ |+
T Consensus 117 ~~~~~~l~v---~nl~~~~~~~~l~~~f~~-~G-~~v~~v~i~~--~~~g~afV~f~~~~~A~~A~~~l~g~--~~~~g~ 187 (198)
T 1qm9_A 117 FPPSATLHL---SNIPPSVSEEDLKVLFSS-NG-GVVKGFKFFQ--KDRKMALIQMGSVEEAVQALIDLHNH--DLGENH 187 (198)
T ss_dssp CCCCCEEEE---CCCCTTCCHHHHHHHHHH-TT-SCCCEEEESS--TTSSCEEEECSSHHHHHHHHHHHTSS--CCSSCC
T ss_pred CCCccEEEE---eCCCCCCCHHHHHHHHHH-cC-CCceEEEEEe--CCCcEEEEEeCCHHHHHHHHHHhcCC--ccCCCC
Confidence 345789999 8888 999999999995 99 5567776622 34789999999999977775532222 357 88
Q ss_pred eeEEEeccc
Q 045525 274 DIRVRRFVP 282 (295)
Q Consensus 274 ~vWarky~p 282 (295)
.+-+.-..|
T Consensus 188 ~l~v~~a~~ 196 (198)
T 1qm9_A 188 HLRVSFSKS 196 (198)
T ss_dssp SCCEEEECC
T ss_pred eEEEEeecc
Confidence 886665444
No 192
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=97.25 E-value=0.0014 Score=56.54 Aligned_cols=61 Identities=16% Similarity=0.145 Sum_probs=42.5
Q ss_pred CCCCceEEEEccC-CcccCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhC
Q 045525 197 ADTDRTLFATFSK-GHPISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILG 261 (295)
Q Consensus 197 ~~d~Rt~FvTFS~-G~Pvse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~ 261 (295)
++..+.+.|...+ .+++|+++|++.|. +|| -|++|.|-+ .+..+||+|.|.+++.....+.
T Consensus 41 ~~ps~vl~l~VgNL~~~vted~L~~~Fs-~fG--~V~~V~i~~-k~~rgfAFVeF~d~~~A~~Ai~ 102 (164)
T 1sjr_A 41 AGQSPVLRIIVENLFYPVTLDVLHQIFS-KFG--TVLKIITFT-KNNQFQALLQYADPVSAQHAKL 102 (164)
T ss_dssp CCCCCEEEEEECSCCSCCCHHHHHHHHH-HHS--CEEEEEEEE-SSSCEEEEEEESCHHHHHHHHH
T ss_pred CCCCceEEEEEeCcCCCCCHHHHHHHHH-hcC--CEEEEEEEe-CCCCCEEEEEECCHHHHHHHHH
Confidence 4445555443333 45699999999999 599 566776643 3456899999999887655543
No 193
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=97.18 E-value=0.00072 Score=57.24 Aligned_cols=72 Identities=14% Similarity=0.057 Sum_probs=50.1
Q ss_pred ceEEEEccCCc----c--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecC------HH---HHHHHhCCC
Q 045525 201 RTLFATFSKGH----P--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRS------PA---YITLILGEN 263 (295)
Q Consensus 201 Rt~FvTFS~G~----P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s------~~---~v~~vL~g~ 263 (295)
..||| +|. | +++++|++||. .|| ++.+-..+.| ++++.+||+|.|.+ .+ +-..|...
T Consensus 3 ~kI~V---gnL~~~~~~~tte~~Lk~~Fs-~fG-eV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~- 76 (136)
T 2j8a_A 3 CEIVV---YPAQDSTTTNIQDISIKNYFK-KYG-EISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKH- 76 (136)
T ss_dssp CEEEE---EESSSSCCCCCCHHHHHHHHH-TTS-CCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHT-
T ss_pred cEEEE---eCCCCCCCCCCCHHHHHHHHH-hcC-CeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHh-
Confidence 35666 677 6 99999999999 599 7777777777 99999999999994 32 23333310
Q ss_pred CcccEEECCceeEEE
Q 045525 264 ELKQFDIHGKDIRVR 278 (295)
Q Consensus 264 ~~~kf~Ingk~vWar 278 (295)
...-..|+|+.+-+.
T Consensus 77 ~lng~~I~Gr~irV~ 91 (136)
T 2j8a_A 77 ESSGCFIMGFKFEVI 91 (136)
T ss_dssp TTTCEEETTEEEEEE
T ss_pred hhcCCeecCcEEEEE
Confidence 112236888877553
No 194
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=97.15 E-value=0.0011 Score=57.44 Aligned_cols=77 Identities=19% Similarity=0.163 Sum_probs=57.3
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEEC-Cc
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIH-GK 273 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~In-gk 273 (295)
....+++|| +|.| ++++||+++|.+ || --|+.+.+. ....+||+|.|.+.+....++..-+. ..++ |+
T Consensus 148 ~~~~~~l~V---~nlp~~~t~~~l~~~f~~-~G-~~i~~v~i~--~~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~~g~ 218 (229)
T 2adc_A 148 FPPSATLHL---SNIPPSVSEEDLKVLFSS-NG-GVVKGFKFF--QKDRKMALIQMGSVEEAVQALIDLHN--HDLGENH 218 (229)
T ss_dssp CCSCSEEEE---ECCCTTCCHHHHHHHHHT-TS-CCEEEEEEC--SSSTTCEEEEESSHHHHHHHHHHHTT--CBSSSSC
T ss_pred CCCCCEEEE---eCCCccCCHHHHHHHHHH-cC-CCeeEEEEE--ECCCcEEEEEECCHHHHHHHHHHHCC--CccCCCC
Confidence 345799999 7888 999999999995 99 557777773 23468999999999998777653222 2457 88
Q ss_pred eeEEEeccc
Q 045525 274 DIRVRRFVP 282 (295)
Q Consensus 274 ~vWarky~p 282 (295)
.+-+.-..|
T Consensus 219 ~l~v~~a~~ 227 (229)
T 2adc_A 219 HLRVSFSKS 227 (229)
T ss_dssp BCEEEECSS
T ss_pred eEEEEEecC
Confidence 887765544
No 195
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=97.03 E-value=0.001 Score=57.75 Aligned_cols=59 Identities=17% Similarity=0.134 Sum_probs=45.2
Q ss_pred CCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCc-eeEEEeec-cCCCCceEEEEecCHHHHHHHhC
Q 045525 198 DTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDC-VEDIKMGC-CRDQSLYARVIVRSPAYITLILG 261 (295)
Q Consensus 198 ~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~c-ve~v~M~~-~~~qplfarivf~s~~~v~~vL~ 261 (295)
+..++||| ++.| +|+++|+++|.. || .+ +.++.+-. .++..+||+|-|.+.+.....|.
T Consensus 121 ~p~~~l~v---~NLp~~~t~~~L~~~F~~-~G-~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~ 183 (205)
T 3tyt_A 121 HPSNVLHF---FNAPLEVTEENFFEICDE-LG-VKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLG 183 (205)
T ss_dssp CCCSEEEE---EEECTTCCHHHHHHHHHH-HT-CCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHH
T ss_pred CCcceEEE---eCCCCCCCHHHHHHHHHh-cC-CcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHH
Confidence 44689999 8888 999999999995 99 65 25555433 45556999999999887666544
No 196
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=96.87 E-value=0.0015 Score=51.12 Aligned_cols=63 Identities=21% Similarity=0.269 Sum_probs=44.1
Q ss_pred CCcc--cCHHHHHHHH-----------HHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHH---hCCCCcccEEE
Q 045525 209 KGHP--ISRAELFEFF-----------IRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLI---LGENELKQFDI 270 (295)
Q Consensus 209 ~G~P--vse~Ei~efF-----------~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~v---L~g~~~~kf~I 270 (295)
.|.| ++++|++++| ..+|| . |++|.+-+ .+++.+||+|.|.+++..... |+|. .+
T Consensus 21 ~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G-~-V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~-----~~ 93 (104)
T 1jmt_A 21 DGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYG-E-VEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR-----WF 93 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-C-EEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTC-----EE
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHhhccCC-c-eEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCC-----EE
Confidence 4544 6777777666 24799 5 55555544 577899999999998876654 5564 58
Q ss_pred CCceeEEE
Q 045525 271 HGKDIRVR 278 (295)
Q Consensus 271 ngk~vWar 278 (295)
+||.+-+.
T Consensus 94 ~Gr~i~v~ 101 (104)
T 1jmt_A 94 NGQPIHAE 101 (104)
T ss_dssp TTEECCEE
T ss_pred CCEEEEEE
Confidence 99988664
No 197
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=96.77 E-value=0.0034 Score=52.10 Aligned_cols=75 Identities=17% Similarity=0.159 Sum_probs=49.8
Q ss_pred CCCCceEEEEccC-CcccCHHHHHHHHHHhhCCCceeEEEeeccCCCCce-EEEEecCHHHHHHH---hCCCCcccEEEC
Q 045525 197 ADTDRTLFATFSK-GHPISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLY-ARVIVRSPAYITLI---LGENELKQFDIH 271 (295)
Q Consensus 197 ~~d~Rt~FvTFS~-G~Pvse~Ei~efF~~~yG~~cve~v~M~~~~~qplf-arivf~s~~~v~~v---L~g~~~~kf~In 271 (295)
+...+.++|...+ .|++|++++++.|. +|| -|++|.|-+ +.++| |+|.|.+.+..... |+|. .|.
T Consensus 23 ~~ps~VL~I~V~NL~~~vte~~L~~lFs-~yG--~V~~V~i~~--~~~gfqAFVef~~~~~A~~Ai~~LnG~-----~i~ 92 (130)
T 3zzy_A 23 AGQSPVLRIIVENLFYPVTLDVLHQIFS-KFG--TVLKIITFT--KNNQFQALLQYADPVSAQHAKLSLDGQ-----NIY 92 (130)
T ss_dssp --CCSEEEEEEESCCSCCCHHHHHHHHT-TSS--CEEEEEEEE--ETTEEEEEEEESCHHHHHHHHHHHTTC-----EEE
T ss_pred CCCCceEEEEECCCCCCCCHHHHHHHHh-CcC--CEEEEEEEc--CCCCcEEEEEECCHHHHHHHHHHcCCC-----eec
Confidence 3446777766665 57899999999999 599 455666643 33577 99999998775554 5665 466
Q ss_pred CceeEEEecc
Q 045525 272 GKDIRVRRFV 281 (295)
Q Consensus 272 gk~vWarky~ 281 (295)
|+.-.+|.-.
T Consensus 93 g~~~~LrI~~ 102 (130)
T 3zzy_A 93 NACCTLRIDF 102 (130)
T ss_dssp TTEEEEEEEE
T ss_pred CCCcEEEEEe
Confidence 6333334433
No 198
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=96.60 E-value=0.007 Score=47.61 Aligned_cols=65 Identities=12% Similarity=-0.014 Sum_probs=50.0
Q ss_pred eEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHH---HhCCCCcccEEECCceeE
Q 045525 202 TLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITL---ILGENELKQFDIHGKDIR 276 (295)
Q Consensus 202 t~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~---vL~g~~~~kf~Ingk~vW 276 (295)
.+|| ++.+ +||++++++|.+ || + |..+.+. .+.+||+|-|.+++..+. .||| ..+.||.|-
T Consensus 9 wL~V---gNL~~~~te~~L~~lF~q-~G-~-V~~~~l~---~~kGfaFVey~~~~eA~~Ai~~Ln~-----~~l~gr~I~ 74 (89)
T 2wbr_A 9 WLLL---KNLTAQIDGPTLRTLCMQ-HG-P-LVSFHPY---LNQGIALCKYTTREEANKAQMALNN-----CVLANTTIF 74 (89)
T ss_dssp EEEE---ECCCTTCCCHHHHHHHHH-HS-C-EEEEEEE---TTTTEEEEEESSHHHHHHHHHHHTT-----EEETTEEEE
T ss_pred eEEE---eCCCccCCHHHHHHHHHh-hC-C-EEEEEEc---CCCcEEEEEECCHHHHHHHHHHhcC-----CEECCcEEE
Confidence 5666 7777 999999999995 99 4 4455552 379999999999977554 4555 478999987
Q ss_pred EEec
Q 045525 277 VRRF 280 (295)
Q Consensus 277 arky 280 (295)
++..
T Consensus 75 V~~A 78 (89)
T 2wbr_A 75 AESP 78 (89)
T ss_dssp EECC
T ss_pred EEEC
Confidence 7654
No 199
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.53 E-value=0.0098 Score=47.48 Aligned_cols=73 Identities=15% Similarity=0.041 Sum_probs=54.8
Q ss_pred CCce-EEEEccCCcc--cCHHHHH----HHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHh---CCCCcccE
Q 045525 199 TDRT-LFATFSKGHP--ISRAELF----EFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLIL---GENELKQF 268 (295)
Q Consensus 199 d~Rt-~FvTFS~G~P--vse~Ei~----efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL---~g~~~~kf 268 (295)
.+.| +|| ++.| +++++++ +.|.+ || --|..| ++ +||+|+|.+++...+.+ +|.
T Consensus 7 p~~T~lYV---~NL~~~~~~~~lk~~L~~lF~~-yG-G~Vl~V----tg---G~AfV~F~~~esA~~A~~~l~G~----- 69 (96)
T 2diu_A 7 GCHTLLYV---YNLPANKDGKSVSNRLRRLSDN-CG-GKVLSI----TG---CSAILRFINQDSAERAQKRMENE----- 69 (96)
T ss_dssp CSSEEEEE---ESCCTTSCHHHHHHHHHHHHHT-TT-CCEEEC----CT---TCEEEEESSHHHHHHHHHHHTTC-----
T ss_pred CcceEEEE---eCCCCcCCHHHHHHHHHHHHHH-cC-CeeEEE----ec---CEEEEEECCHHHHHHHHHHhcCC-----
Confidence 4566 778 9999 9988855 89994 94 244444 23 99999999999977665 564
Q ss_pred EECCceeEEEecccCCCCCC
Q 045525 269 DIHGKDIRVRRFVPKPAPVA 288 (295)
Q Consensus 269 ~Ingk~vWarky~pk~~~~~ 288 (295)
.+.||.|-+.-...++.-..
T Consensus 70 ~l~gr~i~v~~A~~~sd~~~ 89 (96)
T 2diu_A 70 DVFGNRIIVSFTPKNRELCE 89 (96)
T ss_dssp CSSSSCCEEESSCCSCCCCC
T ss_pred ccCCceEEEEecCCCcceeE
Confidence 58999999988877766654
No 200
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.48 E-value=0.0083 Score=49.04 Aligned_cols=75 Identities=17% Similarity=0.151 Sum_probs=49.0
Q ss_pred CCCceEEEEccC-CcccCHHHHHHHHHHhhCCCceeEEEeeccCCCCce-EEEEecCHHHHHH---HhCCCCcccEEECC
Q 045525 198 DTDRTLFATFSK-GHPISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLY-ARVIVRSPAYITL---ILGENELKQFDIHG 272 (295)
Q Consensus 198 ~d~Rt~FvTFS~-G~Pvse~Ei~efF~~~yG~~cve~v~M~~~~~qplf-arivf~s~~~v~~---vL~g~~~~kf~Ing 272 (295)
+..++++|...+ .++++++++++.|. +|| -|+.|.|-+ + ++| |+|.|.+++.... -|+|.. |.|
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs-~yG--~V~~v~i~~--~-~Gf~aFVef~~~~~A~~A~~~LnG~~-----i~g 89 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCN-PVG--KVQRIVIFK--R-NGIQAMVEFESVLCAQKAKAALNGAD-----IYA 89 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHT-TTS--CEEEEEEEE--S-SSEEEEEEESSHHHHHHHHHHHTTCC-----CBT
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHH-hcC--CEEEEEEEe--C-CCCEEEEEECCHHHHHHHHHHhCCCE-----ecC
Confidence 446777665444 56799999999999 599 455565533 2 376 9999999876443 456753 566
Q ss_pred c--eeEEEecccC
Q 045525 273 K--DIRVRRFVPK 283 (295)
Q Consensus 273 k--~vWarky~pk 283 (295)
+ .+-+....|+
T Consensus 90 ~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 90 GCCTLKIEYARPT 102 (124)
T ss_dssp TBSEEEEECCSCS
T ss_pred CCeEEEEEEecCC
Confidence 3 4444444444
No 201
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=96.33 E-value=0.013 Score=55.90 Aligned_cols=63 Identities=19% Similarity=0.227 Sum_probs=46.2
Q ss_pred CCCCCceEEEEcc-CCcccCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHH---hCCCC
Q 045525 196 DADTDRTLFATFS-KGHPISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLI---LGENE 264 (295)
Q Consensus 196 v~~d~Rt~FvTFS-~G~Pvse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~v---L~g~~ 264 (295)
.++-.+++||-=- -.+-+||+++++.|.+ || -|++|.|-. ..+||+|.|.+.+..... |||..
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~-~G--~V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~ 80 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEK-CG--LVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKE 80 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHT-TS--CEEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHh-cC--CeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCc
Confidence 3566789999311 1244999999999995 99 567888833 578999999998775555 55643
No 202
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=96.29 E-value=0.0048 Score=48.38 Aligned_cols=62 Identities=13% Similarity=0.034 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHhhCCCceeEEEeec-c----CCCCceEEEEecCHHHHHHH---hCCCCcccEEECCceeEEEecccC
Q 045525 214 SRAELFEFFIRRYGEDCVEDIKMGC-C----RDQSLYARVIVRSPAYITLI---LGENELKQFDIHGKDIRVRRFVPK 283 (295)
Q Consensus 214 se~Ei~efF~~~yG~~cve~v~M~~-~----~~qplfarivf~s~~~v~~v---L~g~~~~kf~Ingk~vWarky~pk 283 (295)
.++||++.|. +|| -|++|.+-. . ++..+||+|.|.+++..... |+|. .++||.+-+.-|-++
T Consensus 28 ~~~dl~~~f~-k~G--~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~-----~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 28 IVEDVRDECS-KYG--LVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR-----KFANRVVVTKYCDPD 97 (105)
T ss_dssp HHHHHHHHHH-TTS--CEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC-----EETTEECEEEEECHH
T ss_pred HHHHHHHHHH-ccC--CEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC-----EeCCCEEEEEEeCHH
Confidence 4689999999 699 566666644 1 36789999999998875544 5674 579999998877543
No 203
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=95.53 E-value=0.015 Score=46.66 Aligned_cols=60 Identities=18% Similarity=0.006 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHH---HhCCCCcccEEECCceeEEEeccc
Q 045525 214 SRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITL---ILGENELKQFDIHGKDIRVRRFVP 282 (295)
Q Consensus 214 se~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~---vL~g~~~~kf~Ingk~vWarky~p 282 (295)
-++||++.|. +|| -|++|.+-+ ....+||+|.|.+++.... -|+|. +++||.+-+.-|-+
T Consensus 30 l~edl~~~f~-kfG--~V~~v~i~~-~~~~G~~fV~f~~~e~A~~Ai~~lnG~-----~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 30 IKDDVIEECN-KHG--GVIHIYVDK-NSAQGNVYVKCPSIAAAIAAVNALHGR-----WFAGKMITAAYVPL 92 (114)
T ss_dssp HHHHHHHHHT-TTT--CCSEEEECT-TCTTCCEEEECSSHHHHHHHHHHHTTC-----EETTEECEEEEECH
T ss_pred HHHHHHHHHh-ccC--CEEEEEEec-CCCcEEEEEEECCHHHHHHHHHHhCCC-----EECCEEEEEEEEcH
Confidence 4678999997 699 566777744 3358999999999876543 46675 68999998876643
No 204
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=95.03 E-value=0.025 Score=45.54 Aligned_cols=60 Identities=12% Similarity=0.055 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhCCCceeEEEeec--c-----CCCCceEEEEecCHHHHHH---HhCCCCcccEEECCceeEEEeccc
Q 045525 215 RAELFEFFIRRYGEDCVEDIKMGC--C-----RDQSLYARVIVRSPAYITL---ILGENELKQFDIHGKDIRVRRFVP 282 (295)
Q Consensus 215 e~Ei~efF~~~yG~~cve~v~M~~--~-----~~qplfarivf~s~~~v~~---vL~g~~~~kf~Ingk~vWarky~p 282 (295)
++||++.|. +|| . |++|.+-. . +++.+||+|.|.+++.... -|+|. .++||.|-+.-|-+
T Consensus 39 eedl~eef~-k~G-~-V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr-----~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 39 EGEVTEECG-KFG-A-VNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR-----WFAGRKVVAEVYDQ 108 (118)
T ss_dssp HHHHHHHHT-TTS-C-EEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTC-----EETTEECEEEEECH
T ss_pred HHHHHHHHh-ccC-C-EeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCC-----EECCcEEEEEEcCh
Confidence 789999999 699 4 55555443 2 2445899999999876443 46675 68999999887643
No 205
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.09 E-value=1.3 Score=35.66 Aligned_cols=75 Identities=20% Similarity=0.309 Sum_probs=60.3
Q ss_pred CceEEEEccCCcc--cCHHHHHHHHHHh--hCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCC-CCcccEEECCce
Q 045525 200 DRTLFATFSKGHP--ISRAELFEFFIRR--YGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGE-NELKQFDIHGKD 274 (295)
Q Consensus 200 ~Rt~FvTFS~G~P--vse~Ei~efF~~~--yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g-~~~~kf~Ingk~ 274 (295)
.+++-| .|.| ++++-+.-||+++ -|+--|+.|.-. + .=|.|+|...+.+++||.. .+ .++|-.
T Consensus 8 ~~~I~V---~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~--~---~~AvItF~d~~va~rVL~k~~H----~L~~~~ 75 (104)
T 2dhx_A 8 GVAVEV---RGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL--G---CGGVLTFREPADAERVLAQADH----ELHGAQ 75 (104)
T ss_dssp CCEEEE---ESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE--T---TEEEEEESSHHHHHHHHTCSCC----BSSSSB
T ss_pred ccEEEE---ECCCCCCChhHheEEEeCCCcCCCceeeEEEEc--C---CcEEEEEcChHHHHHHhcCCcc----eecCeE
Confidence 467777 7888 8899999999984 343666666552 2 4589999999999999997 55 899999
Q ss_pred eEEEecccCCCC
Q 045525 275 IRVRRFVPKPAP 286 (295)
Q Consensus 275 vWarky~pk~~~ 286 (295)
+=++-|.|+.+.
T Consensus 76 LsV~P~~~~~~~ 87 (104)
T 2dhx_A 76 LSLRPAPPRAPA 87 (104)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEcCCCCCcc
Confidence 999999998764
No 206
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=92.02 E-value=0.27 Score=42.01 Aligned_cols=60 Identities=12% Similarity=0.039 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHhhCCCceeEEEee-c------cCCCCceEEEEecCHHHHH---HHhCCCCcccEEECCceeEEEecc
Q 045525 214 SRAELFEFFIRRYGEDCVEDIKMG-C------CRDQSLYARVIVRSPAYIT---LILGENELKQFDIHGKDIRVRRFV 281 (295)
Q Consensus 214 se~Ei~efF~~~yG~~cve~v~M~-~------~~~qplfarivf~s~~~v~---~vL~g~~~~kf~Ingk~vWarky~ 281 (295)
.++|+++-|. +|| + |+++.+- + ++++.+||+|.|.+++... .-|+|. +.+||.|-+.-|-
T Consensus 142 ~~~dl~~e~~-~~G-~-v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr-----~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECG-KFG-A-VNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR-----WFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHT-TTS-C-EEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTC-----BSSSSBCEEEECC
T ss_pred HHHHHHHHHH-ccC-C-eEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCc-----eECCeEEEEEEcC
Confidence 4678999998 699 5 4555543 3 3478899999999987744 456675 5899999887664
No 207
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.11 E-value=0.39 Score=39.30 Aligned_cols=58 Identities=10% Similarity=0.121 Sum_probs=40.7
Q ss_pred ccCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecC-HHHHHHHhCCCCcccEEECCcee
Q 045525 212 PISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRS-PAYITLILGENELKQFDIHGKDI 275 (295)
Q Consensus 212 Pvse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s-~~~v~~vL~g~~~~kf~Ingk~v 275 (295)
++|+++|+++|.+ || -|..|.+.. .+..|+|-|.+ +......+..-+.-++.|+|+.+
T Consensus 30 ~~sredLke~F~~-~G--~V~~Vd~~~---g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 30 QTCREDLHILFSN-HG--EIKWIDFVR---GAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp SCCHHHHHHHTCS-SC--CEEEEECCT---TCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred cCCHHHHHHHHHh-cC--CEEEEEEec---CCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 4899999999995 99 478888855 23369999999 55544444433344567777544
No 208
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=87.89 E-value=0.38 Score=47.66 Aligned_cols=57 Identities=18% Similarity=0.253 Sum_probs=41.9
Q ss_pred CCceEEEEccCCcccCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCC
Q 045525 199 TDRTLFATFSKGHPISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGE 262 (295)
Q Consensus 199 d~Rt~FvTFS~G~Pvse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g 262 (295)
..||+||-+++. +++.|+.+||. +|| -|.++.|.+ .-..|+-|=|.+.+.++.++..
T Consensus 52 a~rsv~v~~~~~--~~~~~l~~y~~-~~g--~i~~~~~~~--~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIHCPEK--ISENKFLKYLS-QFG--PINNHFFYE--SFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEEECCC-----CHHHHHHG-GGS--CCCCEEEEC--SSSEEEEEECC---CCHHHHSS
T ss_pred hcceEEEEcCCC--CCHHHHHHHHH-hcC--CcceEEEEc--cCCeEEEEEeCCHHHHHHHHhc
Confidence 469999976443 99999999997 599 778888877 2229999999999999999987
No 209
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.92 E-value=4.5 Score=31.69 Aligned_cols=73 Identities=14% Similarity=0.184 Sum_probs=47.8
Q ss_pred CceEEEEccC---CcccCH----HHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECC
Q 045525 200 DRTLFATFSK---GHPISR----AELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHG 272 (295)
Q Consensus 200 ~Rt~FvTFS~---G~Pvse----~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ing 272 (295)
|=|++|--.. +...-. .++.+.|.. || +.+. +.+.. ++ |+|.|++.+....+++ .+. +.|+|
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~-~G-~Vi~-vr~~~-d~----~fVtF~d~~sAlaAi~-mnG--~~v~G 75 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFAS-FG-EVIL-IRFVE-DK----MWVTFLEGSSALNVLS-LNG--KELLN 75 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHT-TC-CEEE-EEECS-SS----EEEEESSHHHHHHGGG-GTT--CEETT
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHh-CC-CeEE-EEEec-CC----EEEEECChHHHHHHHh-cCC--eEeCC
Confidence 3477675522 233323 679999995 99 5443 34422 22 8999999999777776 332 26999
Q ss_pred ceeEEEecccC
Q 045525 273 KDIRVRRFVPK 283 (295)
Q Consensus 273 k~vWarky~pk 283 (295)
|.+=++...|.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99988776654
No 210
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=72.28 E-value=1.9 Score=33.42 Aligned_cols=18 Identities=39% Similarity=0.835 Sum_probs=15.5
Q ss_pred cCHHHHHHHHHHhhCCCce
Q 045525 213 ISRAELFEFFIRRYGEDCV 231 (295)
Q Consensus 213 vse~Ei~efF~~~yG~~cv 231 (295)
-|.+||++||..+|| +-|
T Consensus 60 ~sd~eI~~~~v~RYG-~fV 77 (84)
T 2hl7_A 60 KSDGEIVDYMVARYG-DFV 77 (84)
T ss_dssp CCHHHHHHHHHHHHT-TTC
T ss_pred CCHHHHHHHHHHhcC-Cee
Confidence 479999999999999 544
No 211
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=71.43 E-value=2 Score=33.76 Aligned_cols=18 Identities=33% Similarity=0.827 Sum_probs=15.5
Q ss_pred cCHHHHHHHHHHhhCCCce
Q 045525 213 ISRAELFEFFIRRYGEDCV 231 (295)
Q Consensus 213 vse~Ei~efF~~~yG~~cv 231 (295)
-|.+||++||..+|| +-|
T Consensus 57 ~Sd~eI~~~mv~RYG-dfV 74 (90)
T 2kw0_A 57 KSKKEIVDYMVARYG-NFV 74 (90)
T ss_dssp CCHHHHHHHHHHHHT-TTC
T ss_pred CCHHHHHHHHHHhcC-CeE
Confidence 479999999999999 543
No 212
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=69.19 E-value=7.1 Score=32.62 Aligned_cols=68 Identities=19% Similarity=0.274 Sum_probs=49.1
Q ss_pred CCcc-cCHHHHHHHHHHhhCCCceeEEEeec-----------cCC-----CCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 209 KGHP-ISRAELFEFFIRRYGEDCVEDIKMGC-----------CRD-----QSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 209 ~G~P-vse~Ei~efF~~~yG~~cve~v~M~~-----------~~~-----qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
=||| =..+.|.++|++ || +.+|++.+.+ ..+ ..-+=+|.|+|....++.|.-+.. .|+
T Consensus 13 FGFp~~~~~~VI~~Fs~-~G-~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~---ii~ 87 (132)
T 3p3d_A 13 FGYPETMANQVIAYFQE-FG-TILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGA---VFN 87 (132)
T ss_dssp ECCCGGGHHHHHHHHGG-GS-CBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTC---EET
T ss_pred EecCHHHHHHHHHHHHh-hc-eEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCe---EeC
Confidence 3888 567788999995 99 9999876643 122 345569999999999999995443 368
Q ss_pred CceeEEEecc
Q 045525 272 GKDIRVRRFV 281 (295)
Q Consensus 272 gk~vWarky~ 281 (295)
|-=|=+.-|-
T Consensus 88 G~mIGV~Py~ 97 (132)
T 3p3d_A 88 GVLLGVIPYT 97 (132)
T ss_dssp TEECEEEECC
T ss_pred cEEEEEEECC
Confidence 8655555553
No 213
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.97 E-value=12 Score=29.53 Aligned_cols=53 Identities=15% Similarity=0.315 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCceeEEEe
Q 045525 216 AELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGKDIRVRR 279 (295)
Q Consensus 216 ~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~vWark 279 (295)
.++.+.|.. || +.+ .+.+.. .+ |+|+|++.+....+++ ..-..|+||.+=++.
T Consensus 39 ~~L~~~F~~-~G-~Vi-lvr~v~-d~----~fVtF~d~~sAl~AI~---ldG~~v~Gr~L~V~~ 91 (95)
T 1ufw_A 39 TELMQTLGS-YG-TIV-LVRINQ-GQ----MLVTFADSHSALSVLD---VDGMKVKGRAVKISG 91 (95)
T ss_dssp HHHHHHHHH-HS-CCS-EEEEET-TE----EEEECSCSHHHHHHHH---GGGSEETTEEEEEEC
T ss_pred HHHHHHHHH-CC-CEE-EEEEec-Cc----EEEEEcChHHHHHHHh---cCCeeeCCeEEEEec
Confidence 568999996 99 544 444433 22 9999988888655554 222379999987764
No 214
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=49.86 E-value=84 Score=25.74 Aligned_cols=66 Identities=21% Similarity=0.366 Sum_probs=46.0
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhh-----CCCceeEEEeeccCCCCceEEEEecCHHH---HHHHhCCCCcc
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRY-----GEDCVEDIKMGCCRDQSLYARVIVRSPAY---ITLILGENELK 266 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~y-----G~~cve~v~M~~~~~qplfarivf~s~~~---v~~vL~g~~~~ 266 (295)
-+++||+=+ | +.| ++.+.|+.+.+. | | + +..|+..- .-+. |.|.|.++++ ....|+|.
T Consensus 18 ~~~~rtiaL-~--~ipDtvndarIr~lve~-~~~i~~g-~-i~KI~L~p-DH~G--Aivef~d~~~AgKasLaL~G~--- 85 (117)
T 2l9w_A 18 KELETLICL-F--PLSDKVSPSLICQFLQE-EIHINEK-D-IRKILLVS-DFNG--AIIIFRDSKFAAKMLMILNGS--- 85 (117)
T ss_dssp TTTTSCEEE-E--CCCTTCCHHHHHHHHHH-HTCCCTT-T-CSEEEEET-TTTE--EEEECSCHHHHHHHHHHHSSE---
T ss_pred ccCCcEEEE-e--cCCCCCCHHHHHHHHhh-hhccCcc-c-eeEEEEec-CCCc--eEEEEccchhhHHHHhhcCCe---
Confidence 467888844 3 444 999999999996 8 7 4 44555432 3333 8999999988 55677885
Q ss_pred cEEECCceeE
Q 045525 267 QFDIHGKDIR 276 (295)
Q Consensus 267 kf~Ingk~vW 276 (295)
.++||.+-
T Consensus 86 --ef~gr~Lr 93 (117)
T 2l9w_A 86 --QFQGKVIR 93 (117)
T ss_dssp --EETTEEEE
T ss_pred --eecCeEEE
Confidence 46677663
No 215
>2dzr_A General transcription factor II-I repeat domain- containing protein 1; RSGI RUH-067, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.48 E-value=14 Score=29.54 Aligned_cols=59 Identities=19% Similarity=0.346 Sum_probs=40.5
Q ss_pred cCCcccCHHHHHHHHHHhhCCCc-----------------eeEEEeeccCCCCceEEEEecCHHH-----HHHHhCCCCc
Q 045525 208 SKGHPISRAELFEFFIRRYGEDC-----------------VEDIKMGCCRDQSLYARVIVRSPAY-----ITLILGENEL 265 (295)
Q Consensus 208 S~G~Pvse~Ei~efF~~~yG~~c-----------------ve~v~M~~~~~qplfarivf~s~~~-----v~~vL~g~~~ 265 (295)
|.|.-.=++.|.++|.++|| .- =+.|.++- =++ -|.||.+.+ +.+||....+
T Consensus 2 ~~~~~~LReqVe~lFn~kyg-eALG~~~pV~VPY~~i~~np~av~V~G--LPe---gIpFr~P~~ygi~~Le~IL~~~~~ 75 (99)
T 2dzr_A 2 SSGSSGLREQVQDLFNKKYG-EALGIKYPVQVPYKRIKSNPGSVIIEG--LPP---GIPFRKPCTFGSQNLERILAVADK 75 (99)
T ss_dssp CCCCCSHHHHHHHHHHHHHH-HHHTCSSCCCCCHHHHHHCSSSEEEES--CCT---TCCSSCGGGSCHHHHHHHHHHTTT
T ss_pred ccHHHHHHHHHHHHHHHHHH-HHhCCCCceeCCHHHHhcCCCeEEEec--CCC---CCcccCCCcccHHHHHHHHHhccC
Confidence 34556668899999999999 31 13344433 111 145676654 8999999999
Q ss_pred ccEEECC
Q 045525 266 KQFDIHG 272 (295)
Q Consensus 266 ~kf~Ing 272 (295)
.+|.|+-
T Consensus 76 I~F~Ikr 82 (99)
T 2dzr_A 76 IKFTVTR 82 (99)
T ss_dssp CEEEECS
T ss_pred cEEEEec
Confidence 9999973
No 216
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=41.22 E-value=73 Score=25.88 Aligned_cols=56 Identities=16% Similarity=0.229 Sum_probs=43.0
Q ss_pred CCCceEEEEccCCccc-CHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCC
Q 045525 198 DTDRTLFATFSKGHPI-SRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGE 262 (295)
Q Consensus 198 ~d~Rt~FvTFS~G~Pv-se~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g 262 (295)
.+++.+-| =|||- ..+.|-++|.+ || +.+++.. .+..-+=+|.|++.....+.|.-
T Consensus 22 ~~~~wVtV---FGFp~~~~~~VL~~F~~-~G-~Iv~~~~----~~~~NWihI~Y~s~~~A~rAL~k 78 (119)
T 1wwh_A 22 LDDTWVTV---FGFPQASASYILLQFAQ-YG-NILKHVM----SNTGNWMHIRYQSKLQARKALSK 78 (119)
T ss_dssp GGGGEEEE---ECCCGGGHHHHHHHHHT-TS-CEEEEEE----CSSSSEEEEEESSHHHHHHHHTT
T ss_pred CCCCEEEE---ECCCHHHHHHHHHHHHh-hC-cEEEecc----CCCCCeEEEEeCCHHHHHHHHHh
Confidence 34555544 48884 45677999995 99 8887775 45678899999999999999984
No 217
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=32.52 E-value=21 Score=28.59 Aligned_cols=55 Identities=24% Similarity=0.478 Sum_probs=40.7
Q ss_pred CCCCceEEEEccCCcccCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhC
Q 045525 197 ADTDRTLFATFSKGHPISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILG 261 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~Pvse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~ 261 (295)
|.-+.-++++|++- ....||.+.|.. || .|.+.+.+. .-|.+||++++.+..+|+
T Consensus 13 p~r~HVf~l~FP~e--wKt~DI~~lFs~-fg-----gv~I~WidD--TsAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 13 PKRDHVLHVTFPKE--WKTSDLYQLFSA-FG-----NIQISWIDD--TSAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CCCCSEEEEECCTT--CCHHHHHHHHTT-TC-----SCCCEEEET--TEEEEECSCHHHHHHHHH
T ss_pred CCCCeEEEEeCChh--hhhHHHHHHhhc-cC-----CEEEEEEcC--CeEEEEecCHHHHHHHHH
Confidence 44445566665542 678999999995 98 566666333 349999999999999998
No 218
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=31.89 E-value=19 Score=28.77 Aligned_cols=44 Identities=20% Similarity=0.488 Sum_probs=36.2
Q ss_pred Ccc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhC
Q 045525 210 GHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILG 261 (295)
Q Consensus 210 G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~ 261 (295)
|+| ....||.+.|.. || .|.+.+.+.- -|.+||++++.+..+|+
T Consensus 12 ~FP~ewKt~Di~~lFs~-fg-----gv~I~WidDT--sAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 12 TFPKEWKTSDLYQLFSA-FG-----NIQISWIDDT--SAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp ECCTTCCHHHHHHHTTT-SE-----EEEEEEEETT--EEEEEEEEECHHHHHHH
T ss_pred eCChhhhhHHHHHHHhc-cC-----CEEEEEEcCC--eEEEEecCHHHHHHHHH
Confidence 455 788999999995 99 7888874433 38999999999999998
No 219
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=30.51 E-value=1e+02 Score=24.59 Aligned_cols=52 Identities=8% Similarity=-0.028 Sum_probs=36.9
Q ss_pred EEccCCcccCHHHHHHHHHHhhC--CCceeEEEeec---cCCCCceEEEEecCHHHHH
Q 045525 205 ATFSKGHPISRAELFEFFIRRYG--EDCVEDIKMGC---CRDQSLYARVIVRSPAYIT 257 (295)
Q Consensus 205 vTFS~G~Pvse~Ei~efF~~~yG--~~cve~v~M~~---~~~qplfarivf~s~~~v~ 257 (295)
|.+.++--+|+.||++=....|+ +|+|.-.-+.- .++..+||. |.+|.+...
T Consensus 31 v~Hpg~~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~-IYds~e~ak 87 (107)
T 2v94_A 31 IYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAK-YYYDKDRML 87 (107)
T ss_dssp EECTTSCCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEE-EESSHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEE-EECCHHHHH
Confidence 45666666999999999999999 33433333333 688899995 567777654
No 220
>2dn5_A General transcription factor II-I repeat domain- containing protein 1; structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.95 E-value=16 Score=28.62 Aligned_cols=61 Identities=20% Similarity=0.240 Sum_probs=35.7
Q ss_pred CcccCHHHHHHHHHHhhCCCceeEEEeec-------cCCCCceE-----EEEecCHH-----HHHHHhCCCCcccEEEC
Q 045525 210 GHPISRAELFEFFIRRYGEDCVEDIKMGC-------CRDQSLYA-----RVIVRSPA-----YITLILGENELKQFDIH 271 (295)
Q Consensus 210 G~Pvse~Ei~efF~~~yG~~cve~v~M~~-------~~~qplfa-----rivf~s~~-----~v~~vL~g~~~~kf~In 271 (295)
|--.=+..+.++|+.+|| .-+.-=.|.. .+....+. -|.||.+. .+.+||.+....+|.|-
T Consensus 4 ~~~~Lr~qV~~Lfn~kyg-eALG~~~pv~VPY~~~~~~p~~v~V~GlP~gi~FR~P~~y~I~~Le~IL~~~~~I~f~ii 81 (89)
T 2dn5_A 4 GSSGLREQVKELFNEKYG-EALGLNRPVLVPYKLIRDSPDAVEVTGLPDDIPFRNPNTYDIHRLEKILKAREHVRMVII 81 (89)
T ss_dssp SCCCHHHHHHHHHHHHHH-HHTTCSSCCCCCHHHHHHCTTSEEEESCCTTCCCCCSSSCCHHHHHHHHTTTTTCEEEES
T ss_pred cchhHHHHHHHHhhhhHH-HHcCCCCceeccHHHHhcCCCeEEEEeCCCCccccCCccccHHHHHHHHhhccCceEEEE
Confidence 333447889999999998 3211111110 11111111 24566654 49999999999999774
No 221
>2ed2_A General transcription factor II-I; unknown function, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.89 E-value=17 Score=29.01 Aligned_cols=55 Identities=16% Similarity=0.344 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhhCCCce-----------------eEEEeeccCCCCceEEEEecCHH-----HHHHHhCCCCcccEEECC
Q 045525 215 RAELFEFFIRRYGEDCV-----------------EDIKMGCCRDQSLYARVIVRSPA-----YITLILGENELKQFDIHG 272 (295)
Q Consensus 215 e~Ei~efF~~~yG~~cv-----------------e~v~M~~~~~qplfarivf~s~~-----~v~~vL~g~~~~kf~Ing 272 (295)
+.++.++|..+|| +-+ +.++++. -+. -|.||.+. .+..||.+....+|.|+.
T Consensus 9 rkqVe~LFn~kyg-kALG~~~pv~VPY~k~~~~P~~l~V~G--LP~---gI~FR~P~~ygi~~Le~IL~~~~~IsFvi~r 82 (99)
T 2ed2_A 9 RKMVDQLFCKKFA-EALGSTEAKAVPYQKFEAHPNDLYVEG--LPE---NIPFRSPSWYGIPRLEKIIQVGNRIKFVIKR 82 (99)
T ss_dssp HHHHHHHHHHHHH-HHHTCSSCCCCCHHHHHHCTTTEEEES--CCT---TCCCCCTTTSCHHHHHHHHHTTTTCEEEESC
T ss_pred HHHHHHHhhhHHH-HHhCCCCcccCCHHHHhcCcceEEeec--CCC---CccccCCCcccHHHHHHHHhcccCceEEEec
Confidence 6789999999998 422 1222222 111 25677665 499999999999999987
Q ss_pred cee
Q 045525 273 KDI 275 (295)
Q Consensus 273 k~v 275 (295)
-.+
T Consensus 83 p~l 85 (99)
T 2ed2_A 83 PEL 85 (99)
T ss_dssp GGG
T ss_pred ccc
Confidence 543
No 222
>2d9b_A Gtfii-I, general transcription factor II-I, TFII-I; structural genomics, unknown function, NPPSFA; NMR {Homo sapiens} PDB: 2e3l_A
Probab=27.48 E-value=53 Score=26.60 Aligned_cols=68 Identities=22% Similarity=0.246 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhhCCCc-----------------eeEEEeeccCCCCceEEEEecCH-----HHHHHHhCCCCcccEEECC
Q 045525 215 RAELFEFFIRRYGEDC-----------------VEDIKMGCCRDQSLYARVIVRSP-----AYITLILGENELKQFDIHG 272 (295)
Q Consensus 215 e~Ei~efF~~~yG~~c-----------------ve~v~M~~~~~qplfarivf~s~-----~~v~~vL~g~~~~kf~Ing 272 (295)
+..|.++|..+|| .- =+.|.++- =+. -|.||.+ .++..||...+..+|.|+.
T Consensus 19 RK~VEdlF~~~Yg-eALG~~~pV~VPY~k~~~~p~~v~V~G--LPe---gi~fR~P~~Ygi~~L~~ILe~~~~I~FvIkR 92 (109)
T 2d9b_A 19 RKTVEDYFCFCYG-KALGKSTVVPVPYEKMLRDQSAVVVQG--LPE---GVAFKHPENYDLATLKWILENKAGISFIIKR 92 (109)
T ss_dssp HHHHHHHHHHHHH-HHHTCSSCCCCCHHHHHHCCSSEEEES--CCT---TCCSCCTTSSCHHHHHHHHHTTTTCEEEESC
T ss_pred HHHHHHHHHHHHH-HHcCCCCcccCCHHHHhcCCccEEEee--CCC---CCccCCccccCHHHHHHHHHcCcCceEEEeC
Confidence 4567899999998 31 12333333 111 1344444 5699999999999999993
Q ss_pred ceeEEEecccCCCCCCCCCCC
Q 045525 273 KDIRVRRFVPKPAPVASPSTS 293 (295)
Q Consensus 273 k~vWarky~pk~~~~~~~~~s 293 (295)
= -..|++.....-++|
T Consensus 93 P-----~~~~~~~~~~~~~~~ 108 (109)
T 2d9b_A 93 P-----FLEPKKHVGGSGPSS 108 (109)
T ss_dssp C-----CCCCCCCCCCCCCCC
T ss_pred C-----CcCcccccCCCCCCC
Confidence 1 123666555444444
No 223
>1i27_A Transcription factor IIF; general transcription factor, RAP74, RAP30, TFIIF, RNA polymerase II, winged-helix domain; 1.02A {Homo sapiens} SCOP: a.4.5.30 PDB: 1j2x_A 2k7l_A*
Probab=26.85 E-value=36 Score=25.79 Aligned_cols=16 Identities=6% Similarity=0.245 Sum_probs=13.8
Q ss_pred CCcccCHHHHHHHHHH
Q 045525 209 KGHPISRAELFEFFIR 224 (295)
Q Consensus 209 ~G~Pvse~Ei~efF~~ 224 (295)
.-+|||||+|+.|+.+
T Consensus 6 ~~~~iTEe~VrryL~r 21 (73)
T 1i27_A 6 GDVQVTEDAVRRYLTR 21 (73)
T ss_dssp CCSSCCHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHc
Confidence 3568999999999995
No 224
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=23.82 E-value=1.1e+02 Score=24.14 Aligned_cols=53 Identities=9% Similarity=0.181 Sum_probs=38.7
Q ss_pred EEccCCcccCHHHHHHHHHHhhC--CCceeEEEeec---cCCCCceEEEEecCHHHHHHH
Q 045525 205 ATFSKGHPISRAELFEFFIRRYG--EDCVEDIKMGC---CRDQSLYARVIVRSPAYITLI 259 (295)
Q Consensus 205 vTFS~G~Pvse~Ei~efF~~~yG--~~cve~v~M~~---~~~qplfarivf~s~~~v~~v 259 (295)
|.+ ++--+|+.||++=....|+ +|+|.-.-+.- .++..+||. |.+|.+....+
T Consensus 23 v~H-~~~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~-IYds~e~akk~ 80 (101)
T 1xn9_A 23 VKY-EGSTPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAK-LYEDADRMKQV 80 (101)
T ss_dssp EEC-SSSCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEE-ECSCHHHHHHH
T ss_pred EEc-CCCCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEE-EECCHHHHHhh
Confidence 456 5544999999999999999 55555555544 688899995 57887776544
No 225
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=21.10 E-value=1.3e+02 Score=23.76 Aligned_cols=50 Identities=10% Similarity=0.067 Sum_probs=36.2
Q ss_pred EEccCCcccCHHHHHHHHHHhhC--CCceeEEEeec---cCCCCceEEEEecCHHHH
Q 045525 205 ATFSKGHPISRAELFEFFIRRYG--EDCVEDIKMGC---CRDQSLYARVIVRSPAYI 256 (295)
Q Consensus 205 vTFS~G~Pvse~Ei~efF~~~yG--~~cve~v~M~~---~~~qplfarivf~s~~~v 256 (295)
|.+ +|--+|+.||++=....|+ +|+|.-.-+.- .++..+||. |.+|.+..
T Consensus 23 v~H-~~~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~-IYds~e~a 77 (102)
T 1ywx_A 23 VSF-DAATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAK-IYNDEKAM 77 (102)
T ss_dssp EEC-SSCCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEE-ECSCHHHH
T ss_pred EEc-CCCCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEE-EECCHHHH
Confidence 456 5533999999999999999 45554444444 788899995 56777664
No 226
>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} SCOP: a.4.5.30 PDB: 1onv_A
Probab=21.07 E-value=48 Score=25.63 Aligned_cols=16 Identities=6% Similarity=0.245 Sum_probs=13.5
Q ss_pred CCcccCHHHHHHHHHH
Q 045525 209 KGHPISRAELFEFFIR 224 (295)
Q Consensus 209 ~G~Pvse~Ei~efF~~ 224 (295)
.-+||+||+|+.|+.+
T Consensus 15 ~~~~iTEe~VRryL~r 30 (82)
T 1nha_A 15 GDVQVTEDAVRRYLTR 30 (82)
T ss_dssp -CCCCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh
Confidence 4578999999999995
No 227
>2dn4_A General transcription factor II-I; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.47 E-value=35 Score=27.20 Aligned_cols=55 Identities=25% Similarity=0.414 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhCCCce-----------------eEEEeeccCCCCceEEEEecCHH-----HHHHHhCCCCcccEEECC
Q 045525 215 RAELFEFFIRRYGEDCV-----------------EDIKMGCCRDQSLYARVIVRSPA-----YITLILGENELKQFDIHG 272 (295)
Q Consensus 215 e~Ei~efF~~~yG~~cv-----------------e~v~M~~~~~qplfarivf~s~~-----~v~~vL~g~~~~kf~Ing 272 (295)
+.++.++|+.+|| .-+ +.++++. -+. -|.||.+. .+.+||.+....+|.|+.
T Consensus 9 rkqVeeLFn~kyg-kALG~~~pv~VPY~k~~~~P~~v~V~G--LP~---gi~FR~P~~ygi~~Le~IL~~~~~IsFvi~r 82 (99)
T 2dn4_A 9 RKQVEELFERKYA-QAIKAKGPVTIPYPLFQSHVEDLYVEG--LPE---GIPFRRPSTYGIPRLERILLAKERIRFVIKK 82 (99)
T ss_dssp HHHHHHHHHHHHH-HHTTCCSCCCCCHHHHHHTTTTEEEES--CCT---TCCSSCTTTSCHHHHHHHHHSTTTCEEEESC
T ss_pred HHHHHHHhhhHHH-HHhCCCCcccCCHHHHhcCcceEEeec--CCC---CccccCCCcccHHHHHHHHhcccCceEEEec
Confidence 6789999999999 422 2233322 111 25566654 599999999999999987
Q ss_pred cee
Q 045525 273 KDI 275 (295)
Q Consensus 273 k~v 275 (295)
-.+
T Consensus 83 p~l 85 (99)
T 2dn4_A 83 HEL 85 (99)
T ss_dssp STT
T ss_pred ccc
Confidence 643
Done!