BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>045527
RVQVRLNTQPDPHVSGFEKMLPGSVFLCTWGGFNSDRIVQVYPAHEGRGFRKLTEAELQS
NQECGLCYKCDEKFSPGHRCRKQELQVVLLQEYEAEAQAVEDVGQERELESKPTEGAKNQ
VVEVSLNSVVGLTSPKTLKLASEINNKKVVVLTDSGASHNFISNEVVLVLKLPITNTEPY
GVILRTGSATKAQGICRGVGLILQGVEIVEDFLPLDLGITDIIMGIHWLKTLGATHINWK
THSMKFNTRNTIGKNQFF

High Scoring Gene Products

Symbol, full name Information P value
AT3G42723 protein from Arabidopsis thaliana 0.00074

The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  045527
        (258 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2091793 - symbol:AT3G29750 species:3702 "Arabi...   220  1.3e-17   1
TAIR|locus:2089696 - symbol:AT3G30770 species:3702 "Arabi...   194  2.1e-14   1
TAIR|locus:504955786 - symbol:AT3G42723 species:3702 "Ara...   116  0.00074   1


>TAIR|locus:2091793 [details] [associations]
            symbol:AT3G29750 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004812
            "aminoacyl-tRNA ligase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0006418 "tRNA aminoacylation for protein translation"
            evidence=IEA] InterPro:IPR018150 GO:GO:0005524 GO:GO:0005737
            EMBL:CP002686 GO:GO:0006508 GO:GO:0008233 GO:GO:0006418
            InterPro:IPR021109 SUPFAM:SSF50630 GO:GO:0004812 PANTHER:PTHR22594
            InterPro:IPR013242 Pfam:PF08284 IPI:IPI00544562 RefSeq:NP_189618.1
            UniGene:At.53581 ProteinModelPortal:F4J487
            EnsemblPlants:AT3G29750.1 GeneID:822661 KEGG:ath:AT3G29750
            PhylomeDB:F4J487 ArrayExpress:F4J487 Uniprot:F4J487
        Length = 421

 Score = 220 (82.5 bits), Expect = 1.3e-17, P = 1.3e-17
 Identities = 65/204 (31%), Positives = 100/204 (49%)

Query:    47 GRGFRKLTEAELQSNQECGLCYKCDEKFSPGHRCRKQELQVVLLQEYEAEAQAVEDVGQE 106
             G+GF ++    LQ + +  +  +        ++ R+ EL  + L + + +    +  G  
Sbjct:    37 GQGFEEMFLQGLQPSLQTAV-RELKPNGINSYQSRQAELMSLTLVQAKLDV-VKKKKGVI 94

Query:   107 RELESKPTEG-AKNQVVEVSLNSVVGLTSPKTLKLASEINNKKVVVLTDSGASHNFISNE 165
              ELE    +     Q +E     V+ LT  K ++    I + KVVV  DSGA+ NFI  E
Sbjct:    95 NELEELEQDSYTLRQGME---QLVIDLTRNKGMRFYGFILDHKVVVAIDSGATDNFILVE 151

Query:   166 VVLVLKLPITNTEPYGVILRTGSATKAQGICRGVGLILQGVEIVEDFLPLDLGITDI--I 223
             +   LKLP + T    V+L      ++ G C G+ L +Q VEI E+FL LDL  TD+  I
Sbjct:   152 LAFSLKLPTSITNQASVLLGQRQCIQSVGTCLGIRLWVQEVEITENFLLLDLAKTDVDVI 211

Query:   224 MGIHWLKTLGATHINWKTHSMKFN 247
             +G  WL  LG T +NW+     F+
Sbjct:   212 LGYEWLSKLGETMVNWQNQDFSFS 235


>TAIR|locus:2089696 [details] [associations]
            symbol:AT3G30770 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004812
            "aminoacyl-tRNA ligase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0006418 "tRNA aminoacylation for protein translation"
            evidence=IEA] InterPro:IPR018150 GO:GO:0005524 GO:GO:0005737
            EMBL:CP002686 GO:GO:0006508 GO:GO:0008233 GO:GO:0006418
            GO:GO:0004812 PANTHER:PTHR22594 InterPro:IPR013242 Pfam:PF08284
            IPI:IPI00538539 RefSeq:NP_189700.4 UniGene:At.53604
            ProteinModelPortal:F4J7U9 EnsemblPlants:AT3G30770.1 GeneID:822832
            KEGG:ath:AT3G30770 Uniprot:F4J7U9
        Length = 603

 Score = 194 (73.4 bits), Expect = 2.1e-14, P = 2.1e-14
 Identities = 48/126 (38%), Positives = 68/126 (53%)

Query:   123 EVSLNSVVGLTSPKTLKLASEINNKKVVVLTDSGASHNFISNEVVLVLKLPITNTEPYGV 182
             +V   S    T  K ++    I+  KVVV+ DSGA++NFIS+E+ LVLKLP + T    V
Sbjct:   269 QVKRQSTTEFTKGKDMRFYGFISCHKVVVVIDSGATNNFISDELALVLKLPTSTTNQASV 328

Query:   183 ILRTGSATKAQGICRGVGLILQGVEIVEDFLPLDLGITDI--IMGIHWLKTLGATHINWK 240
             +L      +  G C G+ L++Q VEI E+FL LDL  TD+  I+G    + L    + W 
Sbjct:   329 LLGQRQCIQTIGTCFGINLLVQEVEINENFLLLDLTKTDVDVILGYGGSQNLERQWLIWL 388

Query:   241 THSMKF 246
                  F
Sbjct:   389 NQDFSF 394


>TAIR|locus:504955786 [details] [associations]
            symbol:AT3G42723 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004812
            "aminoacyl-tRNA ligase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006418 "tRNA
            aminoacylation for protein translation" evidence=IEA] [GO:0009506
            "plasmodesma" evidence=IDA] InterPro:IPR018150 GO:GO:0009506
            GO:GO:0005524 GO:GO:0005737 EMBL:CP002686 GO:GO:0006418
            GO:GO:0004812 PANTHER:PTHR22594 InterPro:IPR005162 Pfam:PF03732
            IPI:IPI00518972 RefSeq:NP_683651.4 UniGene:At.53672
            ProteinModelPortal:F4IWM0 EnsemblPlants:AT3G42723.1 GeneID:823303
            KEGG:ath:AT3G42723 Uniprot:F4IWM0
        Length = 818

 Score = 116 (45.9 bits), Expect = 0.00074, P = 0.00074
 Identities = 21/60 (35%), Positives = 34/60 (56%)

Query:   189 ATKAQGICRGVGLILQGVEIVEDFLPLDL--GITDIIMGIHWLKTLGATHINWKTHSMKF 246
             A+  +  C+ + L +  ++IVED+   DL   + D+I+G  WL  LG T +NW+  S  F
Sbjct:   499 ASDVKRSCQEISLRINDIDIVEDYCVWDLKRDVVDVILGYEWLSKLGETEVNWQNQSFSF 558


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.135   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      258       258   0.00087  114 3  11 22  0.48    33
                                                     32  0.48    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  194 KB (2110 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.77u 0.14s 25.91t   Elapsed:  00:00:01
  Total cpu time:  25.77u 0.14s 25.91t   Elapsed:  00:00:01
  Start:  Thu May  9 16:36:17 2013   End:  Thu May  9 16:36:18 2013

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