BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045527
         (258 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1RWJ|A Chain A, C7-type Three-heme Cytochrome Domain
          Length = 82

 Score = 28.1 bits (61), Expect = 4.6,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 49 GFRKLTEAELQSNQECGLCYKCDEKFSPGHRCRK 82
          G ++ T A++   + CG C+   + FS    C K
Sbjct: 45 GAKRFTMADMDKGKSCGACHNGKDAFSSASDCGK 78


>pdb|1UJ4|A Chain A, Crystal Structure Of Thermus Thermophilus
           Ribose-5-phosphate Isomerase
 pdb|1UJ6|A Chain A, Crystal Structure Of Thermus Thermophilus
           Ribose-5-Phosphate Isomerase Complexed With
           Arabinose-5-Phosphate
          Length = 227

 Score = 27.7 bits (60), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 43/106 (40%), Gaps = 16/106 (15%)

Query: 105 QERELESKPTEGAKNQVVEVSLNSVVGLTSPKT-----LKLASEINN---KKVVVLTDSG 156
            ER LES   E A   +  V    VVGL +  T     L+LA  +     K VV +  S 
Sbjct: 1   MERPLESYKKEAAHAAIAYVQDGXVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSR 60

Query: 157 ASHNFISNEVVLVLKLPITNTEPYGVILRTGSATKAQGICRGVGLI 202
           A+      E      +P+ +  P GV L    A +   I  G+ LI
Sbjct: 61  ATEELAKRE-----GIPLVDLPPEGVDLAIDGADE---IAPGLALI 98


>pdb|1UJ5|A Chain A, Crystal Structure Of Thermus Thermophilus
           Ribose-5-Phosphate Isomerase Complexed With
           Ribose-5-Phosphate
          Length = 227

 Score = 27.3 bits (59), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 43/106 (40%), Gaps = 16/106 (15%)

Query: 105 QERELESKPTEGAKNQVVEVSLNSVVGLTSPKT-----LKLASEINN---KKVVVLTDSG 156
            ER LES   E A   +  V    VVGL +  T     L+LA  +     K VV +  S 
Sbjct: 1   MERPLESYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSR 60

Query: 157 ASHNFISNEVVLVLKLPITNTEPYGVILRTGSATKAQGICRGVGLI 202
           A+      E      +P+ +  P GV L    A +   I  G+ LI
Sbjct: 61  ATEELAKRE-----GIPLVDLPPEGVDLAIDGADE---IAPGLALI 98


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.135    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,492,345
Number of Sequences: 62578
Number of extensions: 295108
Number of successful extensions: 583
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 576
Number of HSP's gapped (non-prelim): 9
length of query: 258
length of database: 14,973,337
effective HSP length: 97
effective length of query: 161
effective length of database: 8,903,271
effective search space: 1433426631
effective search space used: 1433426631
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)