BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045527
(258 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
Length = 1547
Score = 37.7 bits (86), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 23/148 (15%)
Query: 60 SNQEC---GLCYKCDEKFSPGHRCRKQELQVVLLQEYEAEAQAVEDVGQERELESKPTEG 116
S +EC LC+ C ++ GHR L E A + D+ E + + P
Sbjct: 257 SREECIKNRLCFYCKKE---GHR----------LNECRARKAVLTDLELESKDQQTPFIK 303
Query: 117 AKNQVVEVSLNSVVGLTSPKTLKLASEINNKKVVVLTDSGASHNFISNEVVLVLKLPITN 176
V +++ + T+ KT+K I N KV L DSG+ +FI ++V +LK I
Sbjct: 304 TLPIVHYIAIPEMDN-TAEKTIK----IQNTKVKTLFDSGSPTSFIRRDIVELLKYEIYE 358
Query: 177 TEPYGVILRTGSATKAQGICRGVGLILQ 204
T P + R ATK+ V + L+
Sbjct: 359 TPP--LRFRGFVATKSAVTSEAVTIDLK 384
>sp|Q7TN75|PEG10_MOUSE Retrotransposon-derived protein PEG10 OS=Mus musculus GN=Peg10 PE=1
SV=2
Length = 958
Score = 37.7 bits (86), Expect = 0.078, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 15/109 (13%)
Query: 149 VVVLTDSGASHNFISNEVVLVLKLPITNTEPYGVILRTGSATKAQGICRGVGLILQGVEI 208
V + DSGAS NFI + V+ +P+ + + V++ A I G +IL+ +
Sbjct: 416 VRAMIDSGASGNFIDQDFVIQNAIPL-RIKDWPVMVE---AIDGHPIASG-PIILETHHL 470
Query: 209 VEDF------LPLDLGIT---DIIMGIHWLKTLGATHINWKTHSMKFNT 248
+ D L D+ + I++GI WL T HI W T S+ FN+
Sbjct: 471 IVDLGDHREILSFDVTQSPFFPIVLGIRWLST-HDPHITWSTRSIVFNS 518
>sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
Length = 1498
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 66/156 (42%), Gaps = 39/156 (25%)
Query: 60 SNQEC---GLCYKCDEKFSPGHRCRKQELQVVLLQEYEAEAQAVEDVGQERELESKPTEG 116
S +EC LC+ C ++ GHR L E A + D+ ELESK
Sbjct: 257 SREECIKNRLCFYCKKE---GHR----------LNECRARKAVLTDL----ELESK---- 295
Query: 117 AKNQVVEVSLNSVVGL--------TSPKTLKLASEINNKKVVVLTDSGASHNFISNEVVL 168
Q + + +V T+ KT+K I N KV L DSG+ +FI ++V
Sbjct: 296 -DQQTLFIKTLPIVHYIAIPEMDNTAEKTIK----IQNTKVKTLFDSGSPTSFIRRDIVE 350
Query: 169 VLKLPITNTEPYGVILRTGSATKAQGICRGVGLILQ 204
+LK I T P + R ATK+ V + L+
Sbjct: 351 LLKYEIYETPP--LRFRGFVATKSAVTSEAVTIDLK 384
>sp|Q54BW4|CPAS2_DICDI Circularly permutated Ras protein 2 OS=Dictyostelium discoideum
GN=cpras2 PE=3 SV=1
Length = 3933
Score = 32.0 bits (71), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 78 HRCRKQELQVVLLQEYEAEAQAVEDVGQERELESKPTEGAKN 119
H +KQEL+ +LLQ+ E E QA E+ ++ + KP E ++
Sbjct: 13 HEVKKQELESILLQQ-EQEKQAKEEKESIKDTDDKPIEDTEH 53
>sp|P18611|MATRX_MEASH Matrix protein OS=Measles virus (strain Halle) GN=M PE=3 SV=1
Length = 335
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 125 SLNSVVGLTSPKTLKLASEINNKKVVVLTDSGASHNFISNEVVLVLKLPITNTEPYGVIL 184
SL VG ++ K KL E +VV +G ++ ++V P+T P+ +L
Sbjct: 75 SLPLGVGRSTAKPEKLLKEATELDIVVRRTAG-----LNEKLVFYNNTPLTLLTPWRKVL 129
Query: 185 RTGSATKAQGICRGVGLI 202
TGS A +C V LI
Sbjct: 130 TTGSVFNANQVCNAVNLI 147
>sp|P06942|MATRX_MEASE Matrix protein OS=Measles virus (strain Edmonston) GN=M PE=3 SV=1
Length = 335
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 125 SLNSVVGLTSPKTLKLASEINNKKVVVLTDSGASHNFISNEVVLVLKLPITNTEPYGVIL 184
SL VG ++ K KL E +VV +G ++ ++V P+T P+ +L
Sbjct: 75 SLPLGVGRSTAKPEKLLKEATELDIVVRRTAG-----LNEKLVFYNNTPLTLLTPWRKVL 129
Query: 185 RTGSATKAQGICRGVGLI 202
TGS A +C V LI
Sbjct: 130 TTGSVFNANQVCSAVNLI 147
>sp|P35976|MATRX_MEASA Matrix protein OS=Measles virus (strain Edmonston-AIK-C vaccine)
GN=M PE=3 SV=1
Length = 335
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 125 SLNSVVGLTSPKTLKLASEINNKKVVVLTDSGASHNFISNEVVLVLKLPITNTEPYGVIL 184
SL VG ++ K KL E +VV +G ++ ++V P+T P+ +L
Sbjct: 75 SLPLGVGRSTAKPEKLLKEATELDIVVRRTAG-----LNEKLVFYNNTPLTLLTPWRKVL 129
Query: 185 RTGSATKAQGICRGVGLI 202
TGS A +C V LI
Sbjct: 130 TTGSVFNANQVCNAVNLI 147
>sp|P41358|MATRX_RINDR Matrix protein OS=Rinderpest virus (strain RBOK) GN=M PE=3 SV=1
Length = 335
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 125 SLNSVVGLTSPKTLKLASEINNKKVVVLTDSGASHNFISNEVVLVLKLPITNTEPYGVIL 184
SL VG ++ K +L E+ + +VV +G ++ ++V P++ P+ IL
Sbjct: 75 SLPLGVGKSTAKPEELLKEVTDLDIVVRRTAG-----LNEKLVFYNNTPLSLLTPWKKIL 129
Query: 185 RTGSATKAQGICRGVGLI 202
TGS A +C V +I
Sbjct: 130 TTGSVFNANQVCNAVNMI 147
>sp|Q8X621|YDHQ_ECO57 Uncharacterized protein YdhQ OS=Escherichia coli O157:H7 GN=ydhQ
PE=4 SV=1
Length = 418
Score = 31.6 bits (70), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 12/110 (10%)
Query: 144 INNKKVVVLTDSGASHNFISNE----VVLVLKLPITNTEP----YGVILRTGSATKAQGI 195
I V++L+ + A NF+ E V L + + + YG L+ + T QG
Sbjct: 252 IQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQG- 310
Query: 196 CRGVGLILQGVEIVEDFLPLDLGITDIIMGIHWLKTLGATHINWKTHSMK 245
GV LIL G + D + +G ++ G WL T ATH+ K ++
Sbjct: 311 --GV-LILDGSTVKGDSVTFSIGNINLNGGKLWLITGAATHVQLKVKRLR 357
>sp|Q7S906|DDI1_NEUCR DNA damage-inducible protein 1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=ddi-1 PE=3 SV=2
Length = 439
Score = 31.2 bits (69), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 61/150 (40%), Gaps = 27/150 (18%)
Query: 94 EAEAQAVEDVGQERELESKPTEGAKNQVVEVSLNSVVGLTSPKTLKLASEINNKKVVVLT 153
EA+A+ E + QER E+ T N V + L L E+N KV L
Sbjct: 169 EAQARIEEIIRQERVTENLQTAMEHNPEV---------FGTVHMLYLDVEVNGAKVKALV 219
Query: 154 DSGASHNFISNEVVL---VLKLPITNTEPYGVILRTGSATKAQGICRGVGLILQG-VEIV 209
DSGA +S ++ +++L V R G K G + +G + V+I
Sbjct: 220 DSGAQATIMSPDIAEACGIMRL---------VDKRYGGIAKGVGTAKIIGRVHTAPVKIG 270
Query: 210 EDFLPLDLGI-----TDIIMGIHWLKTLGA 234
FLP + D+++G+ LK A
Sbjct: 271 SLFLPCSFTVMEGKNVDMLLGLDMLKRYQA 300
>sp|Q3A218|RNY_PELCD Ribonuclease Y OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd
1) GN=rny PE=3 SV=1
Length = 520
Score = 31.2 bits (69), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 15/163 (9%)
Query: 51 RKLTEAELQSNQECGLCYKCDEKFSPGHRCRKQELQVVLLQEYEAEAQAVEDVGQER--E 108
++L + E +++ DE+F G R ++ Q ++ +E EA A+ +ER E
Sbjct: 89 KRLVQREENLDRKVAQVDARDEEF--GQREKRLSQQESRIRSWEKEADALVRQQRERLEE 146
Query: 109 LESKPTEGAKNQVVEVSLNSVVGLTSPKTLKL----ASEINNKK---VVVLTDSGASHNF 161
L E AK Q++E + S K +K A E +KK ++ L + +F
Sbjct: 147 LAGLGAEEAKAQLME-QMESEARHECAKKIKQIEDEAKEAADKKAQEILALAVQRYAGDF 205
Query: 162 ISNEVVLVLKLPITNTEPYGVIL-RTGSATKAQGICRGVGLIL 203
++ V V+ LP N E G I+ R G +A G+ LI+
Sbjct: 206 VAESAVSVVPLP--NDEMKGRIIGREGRNIRAIEAATGIDLII 246
>sp|Q9IK90|MATRX_NIPAV Matrix protein OS=Nipah virus GN=M PE=3 SV=1
Length = 352
Score = 30.8 bits (68), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 64/155 (41%), Gaps = 20/155 (12%)
Query: 49 GFRKLTEAELQSNQECGLCYKCDEKFSPGHRCRKQELQVVLLQEYEAEAQAVEDVGQERE 108
G+ E E+ N YK ++PG RK + L+ VEDV
Sbjct: 28 GYLDKVEPEIDENGSMIPKYKI---YTPGANERKYNNYMYLIC-----YGFVEDV----- 74
Query: 109 LESKPTEGAKNQVVEVSLNSV-VGLTSPKTLKLASEINNKKVVVLTDSGASHNFISNEVV 167
E P G + ++ ++ + VG ++ L E+ + KV V +G++ ++V
Sbjct: 75 -ERTPETGKRKKIRTIAAYPLGVGKSASHPQDLLEELCSLKVTVRRTAGSTE-----KIV 128
Query: 168 LVLKLPITNTEPYGVILRTGSATKAQGICRGVGLI 202
P+ + P+ +L +GS A +CR V I
Sbjct: 129 FGSSGPLNHLVPWKKVLTSGSIFNAVKVCRNVDQI 163
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,091,142
Number of Sequences: 539616
Number of extensions: 3826530
Number of successful extensions: 9857
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 9851
Number of HSP's gapped (non-prelim): 25
length of query: 258
length of database: 191,569,459
effective HSP length: 115
effective length of query: 143
effective length of database: 129,513,619
effective search space: 18520447517
effective search space used: 18520447517
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)