Query 045527
Match_columns 258
No_of_seqs 244 out of 1139
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 04:38:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045527.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045527hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s8i_A Protein DDI1 homolog 1; 99.9 1.9E-22 6.4E-27 161.9 11.0 116 134-250 21-136 (148)
2 2i1a_A DNA damage-inducible pr 99.8 4.4E-19 1.5E-23 142.0 11.8 111 134-247 23-134 (148)
3 1fmb_A EIAV protease; hydrolas 99.1 1.3E-10 4.6E-15 87.1 8.5 97 137-239 8-104 (104)
4 3slz_A GAG-Pro-POL polyprotein 99.1 1.5E-10 5E-15 90.3 7.9 98 134-241 19-116 (132)
5 3ec0_A Protease; HIV-2, inhibi 98.9 1E-08 3.5E-13 75.8 9.0 91 138-239 9-99 (99)
6 2hs1_A HIV-1 protease; ultra-h 98.8 5.1E-08 1.7E-12 72.2 10.5 91 138-239 9-99 (99)
7 3ka2_A [L-Ala51;Gly51']HIV-1 p 98.5 4E-07 1.4E-11 75.7 9.1 92 138-240 9-100 (203)
8 2hah_A Protease, retropepsin; 98.5 3E-07 1E-11 70.0 7.6 94 137-237 14-114 (116)
9 3sqf_A Protease; folded monome 98.1 4.5E-06 1.5E-10 63.0 6.5 99 138-244 10-112 (114)
10 3ka2_A [L-Ala51;Gly51']HIV-1 p 98.0 4.1E-05 1.4E-09 63.6 10.7 91 138-239 113-203 (203)
11 1nc8_A Nucleocapsid protein; H 97.9 3.4E-06 1.2E-10 48.2 1.2 22 62-83 4-25 (29)
12 2rsp_A RSV protease; hydrolase 97.8 3.8E-05 1.3E-09 58.9 6.4 86 143-234 26-119 (124)
13 1a6b_B Momulv, zinc finger pro 97.7 1.2E-05 4E-10 49.4 1.9 22 63-84 9-30 (40)
14 1dsq_A Nucleic acid binding pr 97.7 1.2E-05 4.1E-10 44.6 1.3 19 65-83 3-21 (26)
15 1u6p_A GAG polyprotein; MLV, A 97.5 2.3E-05 7.8E-10 51.7 1.1 21 63-83 22-42 (56)
16 2pma_A Uncharacterized protein 97.2 0.00014 4.9E-09 57.3 2.6 94 146-241 17-139 (146)
17 3liy_A Protease; hydrolase, hy 97.1 0.0013 4.4E-08 49.3 7.0 90 139-234 12-111 (116)
18 2ysa_A Retinoblastoma-binding 96.9 0.00031 1.1E-08 46.0 1.5 19 64-82 7-25 (55)
19 2ec7_A GAG polyprotein (PR55GA 96.5 0.00076 2.6E-08 43.0 1.2 20 63-82 5-24 (49)
20 2a51_A Nucleocapsid protein; s 96.4 0.0012 4E-08 40.0 1.5 19 64-82 21-39 (39)
21 2ihx_A Nucleocapsid (NC) prote 96.3 0.0013 4.4E-08 44.0 1.5 20 63-82 3-22 (61)
22 2ec7_A GAG polyprotein (PR55GA 96.3 0.0016 5.4E-08 41.5 1.8 21 64-84 27-47 (49)
23 2bl6_A Nucleocapsid protein P1 96.3 0.0015 5.2E-08 39.0 1.6 18 66-83 2-19 (37)
24 2a51_A Nucleocapsid protein; s 96.2 0.0013 4.6E-08 39.7 1.2 18 66-83 2-19 (39)
25 2bl6_A Nucleocapsid protein P1 96.2 0.0015 5.1E-08 39.1 1.2 18 65-82 20-37 (37)
26 1cl4_A Protein (GAG polyprotei 96.2 0.002 6.7E-08 42.8 1.8 21 63-83 29-49 (60)
27 1a1t_A Nucleocapsid protein; s 96.1 0.0017 5.8E-08 42.3 1.4 16 66-81 14-29 (55)
28 3nyb_B Protein AIR2; polya RNA 96.1 0.0019 6.5E-08 46.0 1.6 22 63-84 45-66 (83)
29 2ihx_A Nucleocapsid (NC) prote 96.1 0.0018 6.2E-08 43.2 1.3 21 64-84 30-50 (61)
30 1a1t_A Nucleocapsid protein; s 96.0 0.0022 7.6E-08 41.8 1.5 22 63-84 32-53 (55)
31 2cqf_A RNA-binding protein LIN 95.6 0.0041 1.4E-07 41.8 1.5 20 64-83 29-48 (63)
32 1cl4_A Protein (GAG polyprotei 95.5 0.0022 7.6E-08 42.5 0.0 19 65-83 2-20 (60)
33 2cqf_A RNA-binding protein LIN 95.4 0.0054 1.9E-07 41.2 1.5 18 65-82 8-25 (63)
34 2li8_A Protein LIN-28 homolog 95.3 0.005 1.7E-07 42.8 1.2 20 63-82 23-42 (74)
35 2li8_A Protein LIN-28 homolog 95.2 0.0065 2.2E-07 42.2 1.5 20 64-83 46-65 (74)
36 3qvc_A Histo-aspartic protease 94.7 0.15 5E-06 47.2 9.6 104 140-248 320-447 (451)
37 2lli_A Protein AIR2; RNA surve 94.6 0.011 3.7E-07 45.0 1.4 20 63-82 104-123 (124)
38 4aa9_A Chymosin; hydrolase, as 94.4 0.18 6.3E-06 43.8 9.1 93 149-247 208-317 (320)
39 2apr_A Rhizopuspepsin; hydrola 94.0 0.13 4.3E-06 45.2 7.4 93 148-249 212-323 (325)
40 1wkr_A Polyporopepsin; hydrola 93.9 0.14 4.6E-06 45.2 7.3 96 149-249 207-332 (340)
41 1am5_A Pepsin, acid proteinase 93.8 0.12 4.2E-06 45.2 6.9 100 142-248 197-322 (324)
42 1miq_A Plasmepsin; aspartic pr 93.7 0.3 1E-05 43.7 9.5 102 142-248 247-372 (375)
43 1dpj_A Proteinase A; proteinas 93.7 0.22 7.5E-06 43.6 8.3 101 142-248 201-327 (329)
44 1tzs_A Cathepsin E; hydrolase, 93.5 0.18 6.3E-06 44.6 7.6 103 142-251 210-343 (351)
45 3ts2_A Protein LIN-28 homolog 93.5 0.074 2.5E-06 41.8 4.3 19 64-82 97-115 (148)
46 3k1w_A Renin; protease, altern 93.5 0.17 5.8E-06 44.4 7.2 94 149-248 221-338 (341)
47 1yg9_A Aspartic protease BLA G 93.4 0.1 3.4E-06 46.0 5.6 101 142-248 202-327 (330)
48 3ts2_A Protein LIN-28 homolog 93.4 0.026 8.8E-07 44.4 1.4 20 64-83 119-138 (148)
49 3nyb_B Protein AIR2; polya RNA 93.3 0.024 8.3E-07 40.1 1.2 20 64-83 5-24 (83)
50 1bxo_A Protein (penicillopepsi 93.3 0.33 1.1E-05 42.4 8.8 98 147-248 206-321 (323)
51 3fv3_A SAPP1P-secreted asparti 93.3 0.11 3.7E-06 45.7 5.6 97 149-248 215-327 (339)
52 1oew_A Endothiapepsin; hydrola 93.3 0.43 1.5E-05 41.7 9.5 98 147-248 211-328 (329)
53 2bju_A Plasmepsin II; aspartic 92.9 0.52 1.8E-05 43.6 9.7 101 142-248 323-448 (453)
54 1izd_A Aspartic proteinase; su 92.8 0.22 7.4E-06 43.6 6.8 98 147-248 207-321 (323)
55 3pvk_A Candidapepsin-2; hydrol 92.7 0.56 1.9E-05 41.0 9.4 95 149-248 213-329 (342)
56 1ibq_A Aspergillopepsin; aspar 92.6 0.34 1.2E-05 42.4 7.7 97 148-248 208-323 (325)
57 2jys_A Protease/reverse transc 92.5 0.3 1E-05 35.0 5.9 84 140-233 10-97 (107)
58 3cms_A Chymosin B; hydrolase, 92.5 1.5 5.1E-05 38.1 11.9 101 142-248 198-321 (323)
59 3c9x_A Trichoderma reesei aspa 92.5 0.48 1.6E-05 41.4 8.6 97 148-248 213-328 (329)
60 3aup_A SBG7S, BG, basic 7S glo 92.3 0.23 7.8E-06 44.9 6.5 25 221-246 358-382 (403)
61 1lya_B Cathepsin D; lysosomal 92.2 0.53 1.8E-05 39.1 8.2 95 148-248 120-239 (241)
62 2qzx_A Candidapepsin-5; aspart 92.2 0.17 5.8E-06 44.6 5.3 104 142-249 202-330 (342)
63 3psg_A Pepsinogen; hydrolase(a 91.8 0.22 7.6E-06 44.6 5.7 94 149-248 254-368 (370)
64 1j71_A Candidapepsin, aspartic 91.8 0.61 2.1E-05 40.8 8.4 100 142-248 202-322 (334)
65 1mpp_A Pepsin; hydrolase(acid 91.7 0.22 7.6E-06 44.2 5.6 95 149-248 231-353 (361)
66 1htr_B Gastricsin; aspartyl pr 91.4 0.29 1E-05 42.8 5.9 94 149-248 212-327 (329)
67 2lli_A Protein AIR2; RNA surve 90.7 0.092 3.1E-06 39.7 1.7 17 66-82 6-22 (124)
68 1t6e_X Xylanase inhibitor; two 90.7 0.95 3.3E-05 40.4 8.7 28 221-249 345-372 (381)
69 2x0b_A Renin; hydrolase-hormon 90.6 0.34 1.2E-05 43.7 5.7 93 149-248 264-381 (383)
70 3lpj_A Beta-secretase 1; alzhe 90.1 0.12 4.3E-06 47.5 2.3 28 220-248 391-418 (455)
71 3vf3_A Beta-secretase 1; struc 89.8 0.21 7.1E-06 45.0 3.6 28 220-248 345-372 (402)
72 2ewy_A Beta-secretase 2; BACE2 88.4 0.98 3.4E-05 40.2 7.0 28 221-249 327-354 (383)
73 2qp8_A Beta-secretase 1; BACE1 86.6 0.9 3.1E-05 40.7 5.6 28 220-248 338-365 (395)
74 2x0b_A Renin; hydrolase-hormon 84.7 3.6 0.00012 36.8 8.6 90 136-228 61-175 (383)
75 2bju_A Plasmepsin II; aspartic 84.5 2.4 8E-05 39.1 7.4 90 136-228 138-252 (453)
76 3qvc_A Histo-aspartic protease 82.7 1 3.5E-05 41.5 4.2 89 137-228 138-251 (451)
77 1lya_A Cathepsin D; lysosomal 81.5 1.8 6E-05 31.0 4.2 28 137-164 14-43 (97)
78 3vla_A EDGP; extracellular, in 81.4 1.5 5.1E-05 39.8 4.8 26 222-248 372-397 (413)
79 1wkr_A Polyporopepsin; hydrola 80.8 1.7 6E-05 37.9 4.9 88 137-229 13-110 (340)
80 3k1w_A Renin; protease, altern 79.6 7.6 0.00026 33.6 8.6 28 136-163 18-47 (341)
81 3cms_A Chymosin B; hydrolase, 79.1 6.9 0.00024 33.8 8.1 29 136-164 14-44 (323)
82 1miq_A Plasmepsin; aspartic pr 77.8 2.3 7.8E-05 37.9 4.7 28 137-164 63-92 (375)
83 3psg_A Pepsinogen; hydrolase(a 77.1 9.5 0.00033 33.7 8.6 28 137-164 57-86 (370)
84 1qdm_A Prophytepsin; aspartic 76.5 4.4 0.00015 37.5 6.3 27 221-248 450-476 (478)
85 1tzs_A Cathepsin E; hydrolase, 76.2 4.3 0.00015 35.6 6.0 27 138-164 25-53 (351)
86 1bxo_A Protein (penicillopepsi 58.7 9 0.00031 33.0 4.2 29 136-164 15-43 (323)
87 1izd_A Aspartic proteinase; su 58.2 9.3 0.00032 33.0 4.2 28 137-164 16-43 (323)
88 1b5f_A Protein (cardosin A); h 56.5 11 0.00038 31.0 4.2 28 136-163 13-42 (239)
89 1yg9_A Aspartic protease BLA G 56.3 9.5 0.00033 33.0 4.0 27 138-164 19-45 (330)
90 1ibq_A Aspergillopepsin; aspar 56.2 9.7 0.00033 32.9 4.0 29 136-164 14-42 (325)
91 2apr_A Rhizopuspepsin; hydrola 54.2 12 0.00041 32.2 4.3 29 136-164 15-45 (325)
92 1t6e_X Xylanase inhibitor; two 52.7 55 0.0019 28.7 8.5 24 137-163 15-38 (381)
93 1oew_A Endothiapepsin; hydrola 50.7 15 0.0005 31.8 4.2 28 137-164 16-45 (329)
94 3c9x_A Trichoderma reesei aspa 50.1 15 0.00051 31.7 4.2 28 137-164 16-45 (329)
95 1mpp_A Pepsin; hydrolase(acid 49.8 15 0.00053 32.0 4.3 30 136-165 18-49 (361)
96 2qzx_A Candidapepsin-5; aspart 49.7 15 0.00052 31.7 4.2 27 137-163 13-41 (342)
97 1b5f_A Protein (cardosin A); h 49.5 14 0.00048 30.4 3.8 29 142-170 197-232 (239)
98 1j71_A Candidapepsin, aspartic 48.9 16 0.00055 31.5 4.2 27 137-163 13-41 (334)
99 1b5f_B Protein (cardosin A); h 48.6 11 0.00039 25.7 2.6 28 220-248 58-85 (87)
100 1dpj_A Proteinase A; proteinas 48.5 16 0.00056 31.3 4.2 27 137-163 14-42 (329)
101 3fv3_A SAPP1P-secreted asparti 47.2 18 0.00061 31.2 4.2 92 137-230 13-124 (339)
102 2qp8_A Beta-secretase 1; BACE1 47.2 17 0.00059 32.1 4.2 28 137-164 22-51 (395)
103 2ewy_A Beta-secretase 2; BACE2 45.1 20 0.00067 31.5 4.2 28 137-164 14-43 (383)
104 2jmo_A Parkin; IBR, E3 ligase, 44.9 4.3 0.00015 27.9 -0.1 16 65-81 59-74 (80)
105 3pvk_A Candidapepsin-2; hydrol 44.7 20 0.0007 30.8 4.2 27 137-163 13-41 (342)
106 4aa9_A Chymosin; hydrolase, as 44.5 19 0.00066 30.7 4.0 27 138-164 13-41 (320)
107 1htr_B Gastricsin; aspartyl pr 44.0 21 0.00073 30.6 4.2 28 137-164 13-42 (329)
108 3aup_A SBG7S, BG, basic 7S glo 43.4 22 0.00074 31.7 4.3 28 136-163 21-50 (403)
109 1am5_A Pepsin, acid proteinase 43.3 22 0.00076 30.4 4.2 28 137-164 13-42 (324)
110 3vf3_A Beta-secretase 1; struc 43.3 21 0.00073 31.6 4.2 29 136-164 28-58 (402)
111 2ct7_A Ring finger protein 31; 39.4 7.6 0.00026 27.0 0.5 18 65-82 52-72 (86)
112 3lpj_A Beta-secretase 1; alzhe 39.0 27 0.00092 31.6 4.2 28 137-164 75-104 (455)
113 1qdm_A Prophytepsin; aspartic 35.4 33 0.0011 31.4 4.3 27 137-163 53-81 (478)
114 1wgg_A Ubiquitin carboxyl-term 32.4 1.1E+02 0.0036 21.2 5.7 44 134-177 4-48 (96)
115 3vla_A EDGP; extracellular, in 28.8 62 0.0021 28.9 4.9 29 135-163 19-49 (413)
116 2io1_B Small ubiquitin-related 25.3 63 0.0022 22.5 3.4 55 135-193 5-60 (94)
117 2k2d_A Ring finger and CHY zin 25.0 17 0.00057 25.0 0.2 28 55-82 28-60 (79)
118 1wh3_A 59 kDa 2'-5'-oligoadeny 23.0 1.5E+02 0.0052 19.4 5.0 41 134-174 4-45 (87)
119 1v5t_A 8430435I17RIK protein; 22.5 55 0.0019 22.4 2.6 41 136-176 6-47 (90)
120 1v86_A DNA segment, CHR 7, way 20.3 2E+02 0.0067 19.7 5.2 41 136-176 16-56 (95)
No 1
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=99.88 E-value=1.9e-22 Score=161.94 Aligned_cols=116 Identities=15% Similarity=0.203 Sum_probs=95.2
Q ss_pred CCCeEEEEEEECCEEEEEEEcCCCCccccCHHHHHHcCCCcccCCCceEeecccccccccceEeeeeEeeeceeEEeecc
Q 045527 134 SPKTLKLASEINNKKVVVLTDSGASHNFISNEVVLVLKLPITNTEPYGVILRTGSATKAQGICRGVGLILQGVEIVEDFL 213 (258)
Q Consensus 134 ~~~~i~i~~~I~g~~v~aLIDSGAt~sfIs~~~a~~l~l~~~~~~~~~V~~a~G~~~~~~~~~~~v~i~i~g~~~~~~f~ 213 (258)
....+++.+.|||+++++||||||++||||.++|+++|+.......+.......+.....+.+..++|++++..+..+|.
T Consensus 21 ~~~~l~v~~~Ing~~v~~LVDTGAs~s~Is~~~A~rlGL~~~~~~~~~~~a~g~G~~~~~g~v~~~~I~Ig~~~~~~~~~ 100 (148)
T 3s8i_A 21 QVTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVGTQRIIGRVHLAQIQIEGDFLQCSFS 100 (148)
T ss_dssp -CCCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHTTCGGGEEGGGCEECCC---CEEEEEEEEEEEEETTEEEEEEEE
T ss_pred ccCEEEEEEEECCEEEEEEEeCCCCcEeeCHHHHHHcCCccccCcceeEEEEcCCccEEEEEEEEEEEEECCEEEEEEEE
Confidence 35678999999999999999999999999999999999976432223333322223455567777899999999999999
Q ss_pred ccCCCCccEEecchHHHhcCCeEEEeeCCEEEEeeCC
Q 045527 214 PLDLGITDIIMGIHWLKTLGATHINWKTHSMKFNTRN 250 (258)
Q Consensus 214 Vl~~~~~dvILG~dwL~~~~~i~ID~~~~~v~f~~~~ 250 (258)
|++...+|+|||||||.+++. .|||++++|+|...+
T Consensus 101 Vle~~~~d~LLGmD~L~~~~~-~ID~~~~~L~l~~~~ 136 (148)
T 3s8i_A 101 ILEDQPMDMLLGLDMLRRHQC-SIDLKKNVLVIGTTG 136 (148)
T ss_dssp EETTCSSSEEECHHHHHHTTC-EEETTTTEEECTTTC
T ss_pred EeCCCCcCeeccHHHHHhCCE-EEEcCCCEEEEccCC
Confidence 999999999999999999996 999999999997543
No 2
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=99.79 E-value=4.4e-19 Score=142.03 Aligned_cols=111 Identities=22% Similarity=0.248 Sum_probs=87.7
Q ss_pred CCCeEEEEEEECCEEEEEEEcCCCCccccCHHHHHHcCCCcccCCCce-EeecccccccccceEeeeeEeeeceeEEeec
Q 045527 134 SPKTLKLASEINNKKVVVLTDSGASHNFISNEVVLVLKLPITNTEPYG-VILRTGSATKAQGICRGVGLILQGVEIVEDF 212 (258)
Q Consensus 134 ~~~~i~i~~~I~g~~v~aLIDSGAt~sfIs~~~a~~l~l~~~~~~~~~-V~~a~G~~~~~~~~~~~v~i~i~g~~~~~~f 212 (258)
....+.+.+.|||+++.+||||||++++|+.++|+++++.......+. ...+.|+. ...+.+....+.+++..+.++|
T Consensus 23 ~~~~~~v~v~InG~~~~~LvDTGAs~s~is~~~a~~lgl~~~~~~~~~~~a~g~g~~-~~~~~~~~~~i~ig~~~~~~~~ 101 (148)
T 2i1a_A 23 QVPMLYINIEINNYPVKAFVDTGAQTTIMSTRLAKKTGLSRMIDKRFIGEARGVGTG-KIIGRIHQAQVKIETQYIPCSF 101 (148)
T ss_dssp CCCCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHHTGGGGCBCCCC------------CEEEEEEEEEETTEEEEEEE
T ss_pred ccceEEEEEEECCEEEEEEEECCCCccccCHHHHHHcCCCccCCcceEEEEecCCCc-ccccEEEEEEEEECCEEeceeE
Confidence 456789999999999999999999999999999999999765443332 11222332 2234455568999999999999
Q ss_pred cccCCCCccEEecchHHHhcCCeEEEeeCCEEEEe
Q 045527 213 LPLDLGITDIIMGIHWLKTLGATHINWKTHSMKFN 247 (258)
Q Consensus 213 ~Vl~~~~~dvILG~dwL~~~~~i~ID~~~~~v~f~ 247 (258)
.|++ .++|+|||||||++++. .|||.+++|.|.
T Consensus 102 ~vl~-~~~d~iLG~d~L~~~~~-~ID~~~~~l~l~ 134 (148)
T 2i1a_A 102 TVLD-TDIDVLIGLDMLKRHLA-CVDLKENVLRIA 134 (148)
T ss_dssp EEEC-SSCSEEECHHHHHHTTC-EEETTTTEEEET
T ss_pred EEec-CCCCeEecHHHHhhCCE-EEECCCCEEEEc
Confidence 9999 67899999999999996 999999999986
No 3
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=99.15 E-value=1.3e-10 Score=87.08 Aligned_cols=97 Identities=23% Similarity=0.215 Sum_probs=78.8
Q ss_pred eEEEEEEECCEEEEEEEcCCCCccccCHHHHHHcCCCcccCCCceEeecccccccccceEeeeeEeeeceeEEeeccccC
Q 045527 137 TLKLASEINNKKVVVLTDSGASHNFISNEVVLVLKLPITNTEPYGVILRTGSATKAQGICRGVGLILQGVEIVEDFLPLD 216 (258)
Q Consensus 137 ~i~i~~~I~g~~v~aLIDSGAt~sfIs~~~a~~l~l~~~~~~~~~V~~a~G~~~~~~~~~~~v~i~i~g~~~~~~f~Vl~ 216 (258)
...+.++|+|+++.+|+||||..++|+...+.+++++..+.++ +...+.|+.+... ...+.+.+.++.....++|-+
T Consensus 8 RP~v~v~I~Gq~~e~LLDTGAD~TVl~~~~w~~i~lp~~~w~p-~~i~GiGG~i~v~--~~~i~i~i~g~~~~gtvlv~~ 84 (104)
T 1fmb_A 8 RPTTIVLINDTPLNVLLDTGADTSVLTTAHYNRLKYRGRKYQG-TGIGGVGGNVETF--STPVTIKKKGRHIKTRMLVAD 84 (104)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHCSSCCCCEEC-CCEEETTEEECCE--EEEEEEEETTEEEEEEEEEES
T ss_pred CCEEEEEECCEEEEEEeccCCCcEEEccccCcccCCCCccCCc-cEEEeCCCeEEee--EeeeEEEECCeEEEEEEEECC
Confidence 3467899999999999999999999999999999998652223 4566778878877 468999999999888888855
Q ss_pred CCCccEEecchHHHhcCCeEEEe
Q 045527 217 LGITDIIMGIHWLKTLGATHINW 239 (258)
Q Consensus 217 ~~~~dvILG~dwL~~~~~i~ID~ 239 (258)
.. .=|||+|||.+.+. .+||
T Consensus 85 tp--~niiGRd~L~qlg~-tLnf 104 (104)
T 1fmb_A 85 IP--VTILGRDILQDLGA-KLVL 104 (104)
T ss_dssp CS--SCEECHHHHHHTTC-CCCC
T ss_pred CC--CCEecHhHHhhcCc-EEeC
Confidence 32 35899999999995 7765
No 4
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=99.12 E-value=1.5e-10 Score=90.33 Aligned_cols=98 Identities=18% Similarity=0.247 Sum_probs=72.2
Q ss_pred CCCeEEEEEEECCEEEEEEEcCCCCccccCHHHHHHcCCCcccCCCceEeecccccccccceEeeeeEeeeceeEEeecc
Q 045527 134 SPKTLKLASEINNKKVVVLTDSGASHNFISNEVVLVLKLPITNTEPYGVILRTGSATKAQGICRGVGLILQGVEIVEDFL 213 (258)
Q Consensus 134 ~~~~i~i~~~I~g~~v~aLIDSGAt~sfIs~~~a~~l~l~~~~~~~~~V~~a~G~~~~~~~~~~~v~i~i~g~~~~~~f~ 213 (258)
+.....+.++|||+++.+|+||||+.++|+...+. . ...+..+..++|... .. ....+.+.+++......+.
T Consensus 19 ~~~RP~v~i~I~G~~~~~LlDTGAd~tVl~~~~~p-----~-~~~p~~I~GiGG~i~-vr-~~~~i~IeI~g~~~~~~~l 90 (132)
T 3slz_A 19 PPPEPRITLKVGGQPVTFLVDTGAQHSVLTQNPGP-----L-SDKSAWVQGATGGKR-YR-WTTDRKVHLATGKVTHSFL 90 (132)
T ss_dssp CCCSSEEEEEETTEEEEEEECTTCSSCEECSCCCS-----E-EEEEEEEECSSCEEE-EE-EECCEEEEETTEEEEECCE
T ss_pred ccCCCEEEEEECCEEEEEEEeCCCCeEEEccccCC-----C-CCCceEEEccCCEEE-EE-EEeeeEEEECCeeecceEE
Confidence 44455778999999999999999999999975443 1 223456667777643 32 2234678899988887787
Q ss_pred ccCCCCccEEecchHHHhcCCeEEEeeC
Q 045527 214 PLDLGITDIIMGIHWLKTLGATHINWKT 241 (258)
Q Consensus 214 Vl~~~~~dvILG~dwL~~~~~i~ID~~~ 241 (258)
|++... .-|||+|||.+++. .+||..
T Consensus 91 V~~~tP-vnLLGrd~Ltqlg~-tL~fp~ 116 (132)
T 3slz_A 91 HVPDCP-YPLLGRDLLTKLKA-QIHFEG 116 (132)
T ss_dssp ECTTSS-SCEECHHHHHHHTC-EEEEET
T ss_pred EECCCC-ccEECHhhHhhCCc-EEECCC
Confidence 754333 46899999999996 999983
No 5
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=98.87 E-value=1e-08 Score=75.77 Aligned_cols=91 Identities=19% Similarity=0.266 Sum_probs=70.2
Q ss_pred EEEEEEECCEEEEEEEcCCCCccccCHHHHHHcCCCcccCCCceEeecccccccccceEeeeeEeeeceeEEeeccccCC
Q 045527 138 LKLASEINNKKVVVLTDSGASHNFISNEVVLVLKLPITNTEPYGVILRTGSATKAQGICRGVGLILQGVEIVEDFLPLDL 217 (258)
Q Consensus 138 i~i~~~I~g~~v~aLIDSGAt~sfIs~~~a~~l~l~~~~~~~~~V~~a~G~~~~~~~~~~~v~i~i~g~~~~~~f~Vl~~ 217 (258)
..+.++|+|+.+.+|+||||.+++|+. ..++-.. +.++..+.|+.+..... ..+++.+.|+.....++|-+.
T Consensus 9 P~vti~I~Gq~~e~LLDTGAD~TVl~~-----~~~Pg~w--~pk~igGiGG~i~v~qy-~~i~iei~g~~~~gtvlV~~t 80 (99)
T 3ec0_A 9 PVVTAYIEGQPVEVLLDTGADDSIVAG-----IELGNNY--SPKIVGGIGGFINTKEY-KNVEIEVLNKKVRATIMTGDT 80 (99)
T ss_dssp CEEEEEETTEEEEEEECTTCSSCEESS-----CCCCSCC--EEEEEEETTEEEEEEEE-EEEEEEETTEEEEEEEEEECC
T ss_pred CeEEEEECCEEEEEEEecCCCceEEcC-----cccCCCC--CceEEEecCCcEeeeEE-eeEEEEECCeEEEEEEEeCCC
Confidence 367799999999999999999999963 4443221 13467788888888654 578999999998888888443
Q ss_pred CCccEEecchHHHhcCCeEEEe
Q 045527 218 GITDIIMGIHWLKTLGATHINW 239 (258)
Q Consensus 218 ~~~dvILG~dwL~~~~~i~ID~ 239 (258)
. . =|||+|+|.+.+. .++|
T Consensus 81 P-v-niiGRnlLtqlG~-tLnf 99 (99)
T 3ec0_A 81 P-I-NIFGRNILTALGM-SLNL 99 (99)
T ss_dssp S-S-CEECHHHHHHHTC-EEEC
T ss_pred C-c-CeeehhhHhhcCc-EEeC
Confidence 2 2 4799999999996 8876
No 6
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=98.79 E-value=5.1e-08 Score=72.16 Aligned_cols=91 Identities=21% Similarity=0.256 Sum_probs=70.4
Q ss_pred EEEEEEECCEEEEEEEcCCCCccccCHHHHHHcCCCcccCCCceEeecccccccccceEeeeeEeeeceeEEeeccccCC
Q 045527 138 LKLASEINNKKVVVLTDSGASHNFISNEVVLVLKLPITNTEPYGVILRTGSATKAQGICRGVGLILQGVEIVEDFLPLDL 217 (258)
Q Consensus 138 i~i~~~I~g~~v~aLIDSGAt~sfIs~~~a~~l~l~~~~~~~~~V~~a~G~~~~~~~~~~~v~i~i~g~~~~~~f~Vl~~ 217 (258)
..+.++|+|+.+.+|+||||..++|+. ..++..- + .++..+.|+.+..... ..+++.+.++.....++|-+.
T Consensus 9 P~vtvkI~Gq~~eaLLDTGAD~TVl~~-----~~~p~~w-k-pk~igGiGG~i~v~qy-~qi~iei~g~~~~gtvlV~~t 80 (99)
T 2hs1_A 9 PLVTIKIGGQLKEALLDTGADDTIIEE-----MSLPGRW-K-PKMIGGIGGFIKVRQY-DQIIIEIAGHKAIGTVLVGPT 80 (99)
T ss_dssp CEEEEEETTEEEEEEECTTCSSEEESC-----CSSCCCC-E-EEEEEETTEEEEEEEE-EEEEEEETTEEEEEEEEESCC
T ss_pred CEEEEEECCEEEEEEeccCCCcEEEec-----ccCCCCC-C-CcEEEeCCCcEeeeEe-ccEEEEEeCCEEEEEEEeCCC
Confidence 357799999999999999999999995 3444221 1 2466677888777644 588999999998888888553
Q ss_pred CCccEEecchHHHhcCCeEEEe
Q 045527 218 GITDIIMGIHWLKTLGATHINW 239 (258)
Q Consensus 218 ~~~dvILG~dwL~~~~~i~ID~ 239 (258)
. . =|||+|||.+.+. .++|
T Consensus 81 P-v-niiGRd~Ltqlg~-tLnf 99 (99)
T 2hs1_A 81 P-V-NIIGRNLLTQIGA-TLNF 99 (99)
T ss_dssp S-S-CEECHHHHTTTTC-EEEC
T ss_pred c-c-CchhHhHHHHcCC-EEeC
Confidence 3 3 3889999999996 8875
No 7
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=98.51 E-value=4e-07 Score=75.66 Aligned_cols=92 Identities=20% Similarity=0.229 Sum_probs=71.5
Q ss_pred EEEEEEECCEEEEEEEcCCCCccccCHHHHHHcCCCcccCCCceEeecccccccccceEeeeeEeeeceeEEeeccccCC
Q 045527 138 LKLASEINNKKVVVLTDSGASHNFISNEVVLVLKLPITNTEPYGVILRTGSATKAQGICRGVGLILQGVEIVEDFLPLDL 217 (258)
Q Consensus 138 i~i~~~I~g~~v~aLIDSGAt~sfIs~~~a~~l~l~~~~~~~~~V~~a~G~~~~~~~~~~~v~i~i~g~~~~~~f~Vl~~ 217 (258)
..+.++|+|+++.+|+||||..++|.. .+++-. .. .++..+.|+.+..... ..+++++.|+.....++|-+.
T Consensus 9 P~vtv~I~Gq~~e~LLDTGAD~TVl~~-----~~lpg~-w~-pk~igGIGG~i~vrqy-~~i~iei~g~~~~gtvlVg~t 80 (203)
T 3ka2_A 9 PLVTIRIGGQLKEALLDTGADDTVIEE-----LNLPGX-WK-PKLIGGIAGFIKVRQY-DQIPVEIXGHKAIGTVLVGPT 80 (203)
T ss_dssp CEEEEEETTEEEEEEECTTCSSCEECS-----CCCSSC-EE-EEEEEETTEEEEEEEE-EEEEEEETTEEEEEEEEESCC
T ss_pred CeEEEEECCEEEEEEEecCCCceEEec-----ccCCCC-CC-ceEEEEccCcEEEEEE-cceeEEEcCeEEEEEEeeCCC
Confidence 467799999999999999999999993 556542 12 2355677887777543 578999999998888887553
Q ss_pred CCccEEecchHHHhcCCeEEEee
Q 045527 218 GITDIIMGIHWLKTLGATHINWK 240 (258)
Q Consensus 218 ~~~dvILG~dwL~~~~~i~ID~~ 240 (258)
..+ |||+|.|.+.+. .+||.
T Consensus 81 -Pvn-IiGRd~LtqlG~-tLnf~ 100 (203)
T 3ka2_A 81 -PVN-IIGRNLLTQIGX-TLNFX 100 (203)
T ss_dssp -SSC-EECHHHHTTTTC-EEEGG
T ss_pred -CcC-ccchhhhhhcCc-eEEec
Confidence 333 899999999996 99997
No 8
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=98.51 E-value=3e-07 Score=69.98 Aligned_cols=94 Identities=16% Similarity=0.126 Sum_probs=65.8
Q ss_pred eEEEEEEECCEEEEEEEcCCCCccccCHHHHHHcCCCcccCCCceE-eecccccccccceEeeeeEeeecee-----EEe
Q 045527 137 TLKLASEINNKKVVVLTDSGASHNFISNEVVLVLKLPITNTEPYGV-ILRTGSATKAQGICRGVGLILQGVE-----IVE 210 (258)
Q Consensus 137 ~i~i~~~I~g~~v~aLIDSGAt~sfIs~~~a~~l~l~~~~~~~~~V-~~a~G~~~~~~~~~~~v~i~i~g~~-----~~~ 210 (258)
...+ ++|+|+.+.+|+||||..++|+..-.... +.. .++ +. ..+.|+.+.... ..++.+++.++. ...
T Consensus 14 rP~v-ikI~Gq~~eaLLDTGAD~TVi~~~~~~~~--p~~-wkp-k~~igGiGG~i~v~q-y~qv~iei~g~~~~~~~~~g 87 (116)
T 2hah_A 14 PEIL-IFVNGYPIKFLLDTGADITVLNRRDFQVK--NSI-ENG-RQMIGGIGGFIRGTN-YINVHLEIRDENYKTQCIFG 87 (116)
T ss_dssp CEEE-EEETTEEEEEEECTTCSSCEEEGGGCCCT--TCE-EEE-EEEEEETTEEEEEEE-EEEEEEEECCTTSCCEEEEE
T ss_pred CCEE-EEECCEEEEEEecCCCCcEEEcccccccC--CCC-CCC-ceEEecCCCceeeeE-EccEEEEEeCCCCCcceeEE
Confidence 3455 99999999999999999999996322110 221 122 34 667788777753 357889898877 777
Q ss_pred eccccC-CCCccEEecchHHHhcCCeEE
Q 045527 211 DFLPLD-LGITDIIMGIHWLKTLGATHI 237 (258)
Q Consensus 211 ~f~Vl~-~~~~dvILG~dwL~~~~~i~I 237 (258)
.++|.+ ....-=|||.|+|.+.+. .+
T Consensus 88 tvlV~p~tP~~vniiGRd~Ltqlg~-tL 114 (116)
T 2hah_A 88 NVCVLEDNSTPVNILGRDNMIKFNI-RL 114 (116)
T ss_dssp EEEEETTCCCSSEEECHHHHTTTTC-CC
T ss_pred EEEECCCCCccccEecHHHHhHcCC-EE
Confidence 788877 431124899999999985 44
No 9
>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A
Probab=98.14 E-value=4.5e-06 Score=63.01 Aligned_cols=99 Identities=10% Similarity=0.026 Sum_probs=60.2
Q ss_pred EEEEEEECCEEEEEEEcCCCCccccCHHHHHHcCCCcccC--CCceEeecccccccccceEeeeeEe--eeceeEEeecc
Q 045527 138 LKLASEINNKKVVVLTDSGASHNFISNEVVLVLKLPITNT--EPYGVILRTGSATKAQGICRGVGLI--LQGVEIVEDFL 213 (258)
Q Consensus 138 i~i~~~I~g~~v~aLIDSGAt~sfIs~~~a~~l~l~~~~~--~~~~V~~a~G~~~~~~~~~~~v~i~--i~g~~~~~~f~ 213 (258)
..+.++|+|+.+.+|+||||..++|+. ..++-.-. ...+...+-|+.+..... ..+... +.|+.-....+
T Consensus 10 P~vti~I~Gq~~eaLLDTGADdTVi~~-----~~lpg~W~p~~~~k~igGIGG~i~v~qy-~~~~~~~~i~g~k~i~tvl 83 (114)
T 3sqf_A 10 PSLTLWLDDKMFTGLINTGADVTIIKL-----EDWPPNWPITDTLTNLRGIGQSNNPKQS-SKYLTWRDKENNSGLIKPF 83 (114)
T ss_dssp CEEEEEETTEEEEEEECTTCSSCEEEG-----GGSCTTSCEEECCCCCTTCCGGGCCEEE-SSCEEEECTTCCEEEECCE
T ss_pred CeEEEEECCEEEEEEEccCCCceEEec-----ccCCCCcccCcCceEEEeccceEEEEEe-ccceEEEecCCCEEEEEEE
Confidence 356789999999999999999999985 34432111 112445566777777543 233332 67777666666
Q ss_pred ccCCCCccEEecchHHHhcCCeEEEeeCCEE
Q 045527 214 PLDLGITDIIMGIHWLKTLGATHINWKTHSM 244 (258)
Q Consensus 214 Vl~~~~~dvILG~dwL~~~~~i~ID~~~~~v 244 (258)
|++....+ |+|+|.|.+.+. .++|.+..+
T Consensus 84 V~~ptPvN-IiGRn~LtqlG~-tLnfp~~~~ 112 (114)
T 3sqf_A 84 VIPNLPVN-LWGRDLLSQMKI-MMASPNDIV 112 (114)
T ss_dssp EETTCSSC-EECHHHHTTSCC----------
T ss_pred ECCCCccc-EEchhhHhhcCc-EEECCCccc
Confidence 66333334 589999999995 888876554
No 10
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=98.02 E-value=4.1e-05 Score=63.57 Aligned_cols=91 Identities=21% Similarity=0.217 Sum_probs=69.5
Q ss_pred EEEEEEECCEEEEEEEcCCCCccccCHHHHHHcCCCcccCCCceEeecccccccccceEeeeeEeeeceeEEeeccccCC
Q 045527 138 LKLASEINNKKVVVLTDSGASHNFISNEVVLVLKLPITNTEPYGVILRTGSATKAQGICRGVGLILQGVEIVEDFLPLDL 217 (258)
Q Consensus 138 i~i~~~I~g~~v~aLIDSGAt~sfIs~~~a~~l~l~~~~~~~~~V~~a~G~~~~~~~~~~~v~i~i~g~~~~~~f~Vl~~ 217 (258)
..+.++|+|+.+.+|+||||.+++|+ ...++-. .+ .+...+-|+.+..... .++++++.|+.....++|-+.
T Consensus 113 P~~~iki~Gq~~e~LlDTGAD~TVl~-----~~~lpg~-w~-pk~igGiGg~i~v~qy-~~i~iei~g~~~~~tvlVgpt 184 (203)
T 3ka2_A 113 PLVTIRIGGQLKEALLDTGADDTVIE-----ELNLPGX-WK-PKLIGGIGGFIKVRQY-DQIPVEIXGHKAIGTVLVGPT 184 (203)
T ss_dssp CEEEEEETTEEEEEEECTTCSSCEEC-----SCCCCSC-CE-EEEEEETTEEEEEEEE-EEEEEEETTEEEEEEEEESCC
T ss_pred CcEEEEECCEEEeeeecccCCceeee-----cccCCCC-CC-ceEEeeccceEEEEEe-ccEEEEECCeEEEEEEEECCC
Confidence 45779999999999999999999996 3444421 11 2456677887777644 578999999988888888664
Q ss_pred CCccEEecchHHHhcCCeEEEe
Q 045527 218 GITDIIMGIHWLKTLGATHINW 239 (258)
Q Consensus 218 ~~~dvILG~dwL~~~~~i~ID~ 239 (258)
. -=|+|+|.|.+++. .++|
T Consensus 185 -P-vniiGRn~LtqlG~-tl~f 203 (203)
T 3ka2_A 185 -P-VNIIGRNLLTQIGX-TLNF 203 (203)
T ss_dssp -S-SCEECHHHHGGGTC-EEEC
T ss_pred -C-cCeechhhHHHhCC-eeeC
Confidence 2 23789999999996 8876
No 11
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=97.88 E-value=3.4e-06 Score=48.17 Aligned_cols=22 Identities=18% Similarity=0.600 Sum_probs=19.1
Q ss_pred ccCCcceecCCCccCccccCCc
Q 045527 62 QECGLCYKCDEKFSPGHRCRKQ 83 (258)
Q Consensus 62 R~~~lCf~Cg~~gh~~~~Cp~k 83 (258)
|+...||+||+.||++.+||.+
T Consensus 4 r~~~~C~nCgk~GH~ar~C~~p 25 (29)
T 1nc8_A 4 RKVIRCWNCGKEGHSARQCRAP 25 (29)
T ss_dssp CCCCBCTTTSCBSSCGGGCCSS
T ss_pred CCCCEEEECCccccCHhHCccc
Confidence 4557799999999999999865
No 12
>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*
Probab=97.81 E-value=3.8e-05 Score=58.88 Aligned_cols=86 Identities=22% Similarity=0.224 Sum_probs=52.1
Q ss_pred EECCEEEEEEEcCCCCccccCHHHHHHcCCCcccC--CCce-EeecccccccccceEe-eeeEeeece--eEEeeccccC
Q 045527 143 EINNKKVVVLTDSGASHNFISNEVVLVLKLPITNT--EPYG-VILRTGSATKAQGICR-GVGLILQGV--EIVEDFLPLD 216 (258)
Q Consensus 143 ~I~g~~v~aLIDSGAt~sfIs~~~a~~l~l~~~~~--~~~~-V~~a~G~~~~~~~~~~-~v~i~i~g~--~~~~~f~Vl~ 216 (258)
+|+|+.+.+|+||||..++|+. ..++..-. +... ...+-|+.+.... .. .+++++-++ .....+.|.|
T Consensus 26 ~i~gq~~eaLLDTGAD~TVl~~-----~~lP~~W~k~~~~~~~igGIGG~i~v~q-y~~~i~iei~g~~g~~~~tvlV~P 99 (124)
T 2rsp_A 26 KQRSVYITALLDSGADITIISE-----EDWPTDWPVMEAANPQIHGIGGGIPMRK-SRDMIELGVINRDGSLERPLLLFP 99 (124)
T ss_dssp SCSEEEEEEEECTTCSSCEEET-----TTSCTTSCEEECC---------CCCEEE-ESSCEEEEEECTTSCBCCCEEECC
T ss_pred cCCCEEEEEEecCCCCcEEEec-----ccCCCcceeeccccceeeecCceEeeEE-eCCceEEEEeCCCCcEEEEEEECc
Confidence 3899999999999999999985 33332111 0011 1334566566543 33 677888776 4555666766
Q ss_pred CCC--ccEEecchHHHhcCC
Q 045527 217 LGI--TDIIMGIHWLKTLGA 234 (258)
Q Consensus 217 ~~~--~dvILG~dwL~~~~~ 234 (258)
... .-=|+|+|.|.+.+.
T Consensus 100 ~~~~tPvnIiGRdlLtqlG~ 119 (124)
T 2rsp_A 100 AVAMVRGSILGRDCLQGLGL 119 (124)
T ss_dssp EEESCSSEEECHHHHHHTTC
T ss_pred CCCCCceeEECHhHHhhCCc
Confidence 311 124899999999996
No 13
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=97.73 E-value=1.2e-05 Score=49.36 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.2
Q ss_pred cCCcceecCCCccCccccCCcc
Q 045527 63 ECGLCYKCDEKFSPGHRCRKQE 84 (258)
Q Consensus 63 ~~~lCf~Cg~~gh~~~~Cp~k~ 84 (258)
....||+||+.||++.+||++.
T Consensus 9 ~~~~C~~Cgk~GH~ardCP~~~ 30 (40)
T 1a6b_B 9 DRDQCAYCKEKGHWAKDCPKKP 30 (40)
T ss_dssp CSSSCSSSCCTTCCTTSCSSSC
T ss_pred CCCeeeECCCCCcchhhCcCCc
Confidence 4678999999999999999753
No 14
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=97.67 E-value=1.2e-05 Score=44.63 Aligned_cols=19 Identities=16% Similarity=0.669 Sum_probs=17.3
Q ss_pred CcceecCCCccCccccCCc
Q 045527 65 GLCYKCDEKFSPGHRCRKQ 83 (258)
Q Consensus 65 ~lCf~Cg~~gh~~~~Cp~k 83 (258)
..||+||+.||++++||.+
T Consensus 3 ~~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC
T ss_pred CeeEeCCCCCcccccCCCc
Confidence 5699999999999999964
No 15
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=97.52 E-value=2.3e-05 Score=51.68 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=18.7
Q ss_pred cCCcceecCCCccCccccCCc
Q 045527 63 ECGLCYKCDEKFSPGHRCRKQ 83 (258)
Q Consensus 63 ~~~lCf~Cg~~gh~~~~Cp~k 83 (258)
.+..||+||+.||++.+||++
T Consensus 22 ~~~~C~~Cge~GH~ardCp~~ 42 (56)
T 1u6p_A 22 DRDQCAYCKEKGHWAKDCPKK 42 (56)
T ss_dssp CTTBCSSSCCBSSCGGGCTTC
T ss_pred CCCcceeCCCCCcccccCcCC
Confidence 456799999999999999975
No 16
>2pma_A Uncharacterized protein; APC86035.2, protein LPG0085, DUF785, legionella pneumophila pneumophila STR. philadelphia 1; 1.89A {Legionella pneumophila subsp} SCOP: b.50.1.3
Probab=97.21 E-value=0.00014 Score=57.28 Aligned_cols=94 Identities=9% Similarity=0.070 Sum_probs=59.4
Q ss_pred CEEEEEEEcCCCCccccCHHHHHHcC----------CCcc--------cC-CCceEeeccccc--------ccccceEee
Q 045527 146 NKKVVVLTDSGASHNFISNEVVLVLK----------LPIT--------NT-EPYGVILRTGSA--------TKAQGICRG 198 (258)
Q Consensus 146 g~~v~aLIDSGAt~sfIs~~~a~~l~----------l~~~--------~~-~~~~V~~a~G~~--------~~~~~~~~~ 198 (258)
|..+.|=|||||..|-|+..-.+.+. +... +. ....|+..+|.. .... ....
T Consensus 17 g~~~~AKiDTGA~TSSLhA~dI~~Ferdg~~wVrF~~~~~~~~~~~e~pv~~~~~Ik~s~g~~~~~~~~~~~e~R-~VV~ 95 (146)
T 2pma_A 17 NLTLSAKLDTGAKSASLHAVNITEIEKKGIPYLRFTVPTKTGDYSFEGEYVGKVKIKVRSSETNPGLLRTTPIKR-PVVL 95 (146)
T ss_dssp TEEEEEEECTTCSSEEEECEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEEEEEC---------------CCEE-EEEE
T ss_pred CCEEEEEecCCcCcceecceeEEEeeeCCCcEEEEEEecCCCCceEEEEeEEEEEEecCCCccccccccCCcccc-cEEE
Confidence 45588889999999999886554321 1000 00 112233344541 2222 2246
Q ss_pred eeEeeeceeEEeeccccCCC--CccEEecchHHHhcCCeEEEeeC
Q 045527 199 VGLILQGVEIVEDFLPLDLG--ITDIIMGIHWLKTLGATHINWKT 241 (258)
Q Consensus 199 v~i~i~g~~~~~~f~Vl~~~--~~dvILG~dwL~~~~~i~ID~~~ 241 (258)
..+.+++....+.|.+.+-. .|.|+||..||+..+. .+|-..
T Consensus 96 ~~i~lG~~~~~ie~tLtdRs~m~ypmLLGR~~L~~~~~-lVD~s~ 139 (146)
T 2pma_A 96 LNIKLGDKVRTIKVNLTNRKRFLYPLLLGRDAIIDFNG-AVDPAL 139 (146)
T ss_dssp EEEEETTEEEEEEEEEECCCCCSCSEEECHHHHHHTTE-EEETTC
T ss_pred EEEEECCEEEEEEEEEcCCCcCCCCEEechhHHhhCCE-EECCch
Confidence 78889999999999998854 6999999999988874 888654
No 17
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*
Probab=97.13 E-value=0.0013 Score=49.34 Aligned_cols=90 Identities=16% Similarity=0.132 Sum_probs=58.2
Q ss_pred EEEEEEC-----CEEEEEEEcCCCCccccCHHHHHHcCCCcccCC-CceEeecccccccccceEeeeeEeeec----eeE
Q 045527 139 KLASEIN-----NKKVVVLTDSGASHNFISNEVVLVLKLPITNTE-PYGVILRTGSATKAQGICRGVGLILQG----VEI 208 (258)
Q Consensus 139 ~i~~~I~-----g~~v~aLIDSGAt~sfIs~~~a~~l~l~~~~~~-~~~V~~a~G~~~~~~~~~~~v~i~i~g----~~~ 208 (258)
.+.++|+ |+.+.||+||||..++|.. ..++-.-.. +.++..+-|+..... ....+++.+.. ...
T Consensus 12 lvtikI~~~~~~Gq~~eaLLDTGADdTVl~~-----~~lPg~Wkp~~tkiiGGiGg~~~~~-qs~~~pv~i~lpfr~~pv 85 (116)
T 3liy_A 12 VIKAQVDTQTSHPKTIEALLDTGADMTVIPI-----ALFSSNTPLKNTSVLGAGGQTQDHF-KLTSLPVLIRLPFRTTPI 85 (116)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTBSSCEEEG-----GGSCTTCCEEECCEEETTEEESSSE-EEESSCEEEECTTCCSCE
T ss_pred eEEEEEccccCCCeEeEEEeccCCCccEEec-----ccCCCCCcccccceEeecccceeee-EecCCCeEEEeccCCcce
Confidence 5678888 9999999999999999984 334322110 115666667655543 33456666553 333
Q ss_pred EeeccccCCCCccEEecchHHHhcCC
Q 045527 209 VEDFLPLDLGITDIIMGIHWLKTLGA 234 (258)
Q Consensus 209 ~~~f~Vl~~~~~dvILG~dwL~~~~~ 234 (258)
......++..+.=-|||+|-|.+.+.
T Consensus 86 ~l~~~lv~~~~~w~iigRd~l~q~q~ 111 (116)
T 3liy_A 86 VLTSCLVDTKNNWAIIGRDALQQCQG 111 (116)
T ss_dssp EESSCEEETTSCCCEECHHHHHHTTC
T ss_pred eeceEEEcCCCceeEechhHHhhhcc
Confidence 34444455444456999999999886
No 18
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.88 E-value=0.00031 Score=46.01 Aligned_cols=19 Identities=16% Similarity=0.401 Sum_probs=17.0
Q ss_pred CCcceecCCCccCccccCC
Q 045527 64 CGLCYKCDEKFSPGHRCRK 82 (258)
Q Consensus 64 ~~lCf~Cg~~gh~~~~Cp~ 82 (258)
...||+||++||.+++||.
T Consensus 7 ~~~C~kCGk~GH~~k~Cp~ 25 (55)
T 2ysa_A 7 GYTCFRCGKPGHYIKNCPT 25 (55)
T ss_dssp SCCCTTTCCTTSCGGGCSG
T ss_pred CCccccCCCcCcccccCCC
Confidence 4569999999999999994
No 19
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=96.48 E-value=0.00076 Score=43.04 Aligned_cols=20 Identities=20% Similarity=0.639 Sum_probs=13.7
Q ss_pred cCCcceecCCCccCccccCC
Q 045527 63 ECGLCYKCDEKFSPGHRCRK 82 (258)
Q Consensus 63 ~~~lCf~Cg~~gh~~~~Cp~ 82 (258)
+...||+||+.||++.+||.
T Consensus 5 r~~~C~~Cg~~GH~a~~C~~ 24 (49)
T 2ec7_A 5 KVIRCWNCGKEGHSARQCRA 24 (49)
T ss_dssp CCCBCTTTCCBTCCTTTCCC
T ss_pred CcCeeeecCCCCcChhhCcC
Confidence 34557777777777777764
No 20
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=96.37 E-value=0.0012 Score=40.02 Aligned_cols=19 Identities=26% Similarity=0.494 Sum_probs=15.0
Q ss_pred CCcceecCCCccCccccCC
Q 045527 64 CGLCYKCDEKFSPGHRCRK 82 (258)
Q Consensus 64 ~~lCf~Cg~~gh~~~~Cp~ 82 (258)
...||+|++.||++.+||+
T Consensus 21 ~~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 21 QEGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp CSSCTTTCCSSSCTTTSCC
T ss_pred CCccccCCCCCCccCcCcC
Confidence 3568888888888888874
No 21
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=96.30 E-value=0.0013 Score=43.96 Aligned_cols=20 Identities=35% Similarity=0.733 Sum_probs=13.5
Q ss_pred cCCcceecCCCccCccccCC
Q 045527 63 ECGLCYKCDEKFSPGHRCRK 82 (258)
Q Consensus 63 ~~~lCf~Cg~~gh~~~~Cp~ 82 (258)
....||+|++.||++.+||.
T Consensus 3 ~~~~C~~Cg~~GH~a~~C~~ 22 (61)
T 2ihx_A 3 ARGLCYTCGSPGHYQAQCPK 22 (61)
T ss_dssp CTTBCSSSCCBTCCGGGCTT
T ss_pred CCCcccccCCCCeehhhCcC
Confidence 34557777777777777764
No 22
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=96.29 E-value=0.0016 Score=41.53 Aligned_cols=21 Identities=19% Similarity=0.482 Sum_probs=18.3
Q ss_pred CCcceecCCCccCccccCCcc
Q 045527 64 CGLCYKCDEKFSPGHRCRKQE 84 (258)
Q Consensus 64 ~~lCf~Cg~~gh~~~~Cp~k~ 84 (258)
...||+||+.||++.+||.++
T Consensus 27 ~~~C~~Cg~~GH~~~~C~~~~ 47 (49)
T 2ec7_A 27 RQGCWKCGKTGHVMAKCPERQ 47 (49)
T ss_dssp CCSCSSSCCSSCCGGGCCSSC
T ss_pred CCeeCcCCCcCCccCCCcCCC
Confidence 357999999999999999653
No 23
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=96.26 E-value=0.0015 Score=39.00 Aligned_cols=18 Identities=28% Similarity=0.752 Sum_probs=16.0
Q ss_pred cceecCCCccCccccCCc
Q 045527 66 LCYKCDEKFSPGHRCRKQ 83 (258)
Q Consensus 66 lCf~Cg~~gh~~~~Cp~k 83 (258)
.||+|++.||++.+||.+
T Consensus 2 ~C~~Cg~~GH~~~~C~~~ 19 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRAP 19 (37)
T ss_dssp CBSSSCCSSCCTTTSSCB
T ss_pred cccccCCCCcchhhCcCc
Confidence 599999999999999864
No 24
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=96.23 E-value=0.0013 Score=39.74 Aligned_cols=18 Identities=22% Similarity=0.739 Sum_probs=16.5
Q ss_pred cceecCCCccCccccCCc
Q 045527 66 LCYKCDEKFSPGHRCRKQ 83 (258)
Q Consensus 66 lCf~Cg~~gh~~~~Cp~k 83 (258)
.||+|++.||++.+||.+
T Consensus 2 ~C~~Cg~~GH~a~~C~~~ 19 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQP 19 (39)
T ss_dssp BCTTTCCBSSCTTTCCSC
T ss_pred eeeccCCCCcccccCCCC
Confidence 599999999999999964
No 25
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=96.19 E-value=0.0015 Score=39.06 Aligned_cols=18 Identities=28% Similarity=0.800 Sum_probs=16.6
Q ss_pred CcceecCCCccCccccCC
Q 045527 65 GLCYKCDEKFSPGHRCRK 82 (258)
Q Consensus 65 ~lCf~Cg~~gh~~~~Cp~ 82 (258)
..||+|++.||++++||+
T Consensus 20 ~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 20 KVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp TTCSSCCCTTGGGGTTCC
T ss_pred CeEccCCCcCCccCcCcC
Confidence 579999999999999984
No 26
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=96.15 E-value=0.002 Score=42.82 Aligned_cols=21 Identities=24% Similarity=0.594 Sum_probs=18.3
Q ss_pred cCCcceecCCCccCccccCCc
Q 045527 63 ECGLCYKCDEKFSPGHRCRKQ 83 (258)
Q Consensus 63 ~~~lCf~Cg~~gh~~~~Cp~k 83 (258)
....||+|++.||++++||.+
T Consensus 29 ~~~~C~~Cg~~GH~ar~C~~~ 49 (60)
T 1cl4_A 29 VPGLCPRCKRGKHWANECKSK 49 (60)
T ss_dssp CCCSCSSCSSCSSCSTTCCCT
T ss_pred CCcceeECCCCCCccCcCCCc
Confidence 457899999999999999964
No 27
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=96.15 E-value=0.0017 Score=42.34 Aligned_cols=16 Identities=25% Similarity=0.810 Sum_probs=8.0
Q ss_pred cceecCCCccCccccC
Q 045527 66 LCYKCDEKFSPGHRCR 81 (258)
Q Consensus 66 lCf~Cg~~gh~~~~Cp 81 (258)
.||+|++.||++.+||
T Consensus 14 ~C~~Cg~~GH~a~~C~ 29 (55)
T 1a1t_A 14 KCFNCGKEGHIAKNCR 29 (55)
T ss_dssp BCTTTCCBSSCGGGCS
T ss_pred ceeeeCCCCcChhhcC
Confidence 3555555555555554
No 28
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.0019 Score=45.96 Aligned_cols=22 Identities=27% Similarity=0.671 Sum_probs=18.9
Q ss_pred cCCcceecCCCccCccccCCcc
Q 045527 63 ECGLCYKCDEKFSPGHRCRKQE 84 (258)
Q Consensus 63 ~~~lCf~Cg~~gh~~~~Cp~k~ 84 (258)
....||+||+.||++++||.++
T Consensus 45 ~~~~CYnCG~~GH~~rdC~~~r 66 (83)
T 3nyb_B 45 HTIYCYNCGGKGHFGDDCKEKR 66 (83)
T ss_dssp CCCBCSSSSCBSSCGGGCSSCC
T ss_pred CCCeecccCCCCcCcccCCccc
Confidence 3467999999999999999654
No 29
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=96.06 E-value=0.0018 Score=43.23 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=18.5
Q ss_pred CCcceecCCCccCccccCCcc
Q 045527 64 CGLCYKCDEKFSPGHRCRKQE 84 (258)
Q Consensus 64 ~~lCf~Cg~~gh~~~~Cp~k~ 84 (258)
...||+|++.||++.+||.++
T Consensus 30 ~~~C~~Cg~~GH~ar~C~~~~ 50 (61)
T 2ihx_A 30 RERCQLCNGMGHNAKQCRKRD 50 (61)
T ss_dssp CSBCTTTCCBSSCGGGCCCCC
T ss_pred CCeeCCCCCCCCCcCCCcCCC
Confidence 467999999999999999654
No 30
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=96.01 E-value=0.0022 Score=41.75 Aligned_cols=22 Identities=18% Similarity=0.483 Sum_probs=19.1
Q ss_pred cCCcceecCCCccCccccCCcc
Q 045527 63 ECGLCYKCDEKFSPGHRCRKQE 84 (258)
Q Consensus 63 ~~~lCf~Cg~~gh~~~~Cp~k~ 84 (258)
....||+|++.||++.+||.++
T Consensus 32 ~~~~C~~Cg~~GH~~~~C~~~~ 53 (55)
T 1a1t_A 32 RKKGCWKCGKEGHQMKDCTERQ 53 (55)
T ss_dssp SCCBCTTTCCBSSCGGGCSSSC
T ss_pred CCCEeCCCCCcCCccCCCcCcC
Confidence 4578999999999999999653
No 31
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.58 E-value=0.0041 Score=41.79 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=14.3
Q ss_pred CCcceecCCCccCccccCCc
Q 045527 64 CGLCYKCDEKFSPGHRCRKQ 83 (258)
Q Consensus 64 ~~lCf~Cg~~gh~~~~Cp~k 83 (258)
...||+|++.||++.+||.+
T Consensus 29 ~~~C~~Cg~~GH~ar~Cp~~ 48 (63)
T 2cqf_A 29 PKKCHFCQSISHMVASCPLK 48 (63)
T ss_dssp SSCCTTTCCSSSCTTTCTGG
T ss_pred CCccCCcCCcCCccCcCCCc
Confidence 35677777777777777743
No 32
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=95.53 E-value=0.0022 Score=42.54 Aligned_cols=19 Identities=32% Similarity=0.824 Sum_probs=0.0
Q ss_pred CcceecCCCccCccccCCc
Q 045527 65 GLCYKCDEKFSPGHRCRKQ 83 (258)
Q Consensus 65 ~lCf~Cg~~gh~~~~Cp~k 83 (258)
+.||+|++.||++.+||..
T Consensus 2 ~~Cf~Cg~~GH~a~~C~~~ 20 (60)
T 1cl4_A 2 GSCFKCGKKGHFAKNCHEH 20 (60)
T ss_dssp -------------------
T ss_pred CccccCCCCCcCHhhCcCC
Confidence 3599999999999999964
No 33
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.39 E-value=0.0054 Score=41.15 Aligned_cols=18 Identities=22% Similarity=0.639 Sum_probs=16.6
Q ss_pred CcceecCCCccCccccCC
Q 045527 65 GLCYKCDEKFSPGHRCRK 82 (258)
Q Consensus 65 ~lCf~Cg~~gh~~~~Cp~ 82 (258)
..||+|++.||++.+||.
T Consensus 8 ~~C~~Cg~~GH~a~~C~~ 25 (63)
T 2cqf_A 8 DRCYNCGGLDHHAKECKL 25 (63)
T ss_dssp CCCSSSCCSSSCTTTCCS
T ss_pred CcccccCCCCcChhhCCC
Confidence 569999999999999995
No 34
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=95.34 E-value=0.005 Score=42.78 Aligned_cols=20 Identities=20% Similarity=0.562 Sum_probs=16.8
Q ss_pred cCCcceecCCCccCccccCC
Q 045527 63 ECGLCYKCDEKFSPGHRCRK 82 (258)
Q Consensus 63 ~~~lCf~Cg~~gh~~~~Cp~ 82 (258)
....||+|++.||++.+||.
T Consensus 23 r~~~C~~Cg~~GH~a~~C~~ 42 (74)
T 2li8_A 23 KGDRCYNCGGLDHHAKECKL 42 (74)
T ss_dssp TTSCCTTTCCSSSCTTTCSS
T ss_pred CCCcccccCCcCcCcccCCC
Confidence 45679999999999999984
No 35
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=95.22 E-value=0.0065 Score=42.19 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=17.9
Q ss_pred CCcceecCCCccCccccCCc
Q 045527 64 CGLCYKCDEKFSPGHRCRKQ 83 (258)
Q Consensus 64 ~~lCf~Cg~~gh~~~~Cp~k 83 (258)
...||+|++.||++.+||.+
T Consensus 46 ~~~C~~Cg~~GH~ar~Cp~~ 65 (74)
T 2li8_A 46 PKKCHFCQSISHMVASCPLK 65 (74)
T ss_dssp CCCCTTTCCTTSCGGGCTTG
T ss_pred CCccCCcCCcCCccCcCcCC
Confidence 46799999999999999964
No 36
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=94.68 E-value=0.15 Score=47.24 Aligned_cols=104 Identities=13% Similarity=0.071 Sum_probs=65.3
Q ss_pred EEEEECC---EEEEEEEcCCCCccccCHHHHHHcCCCcccCCCceEeeccccc-cccc-ceEeeeeEeeeceeEEeec--
Q 045527 140 LASEINN---KKVVVLTDSGASHNFISNEVVLVLKLPITNTEPYGVILRTGSA-TKAQ-GICRGVGLILQGVEIVEDF-- 212 (258)
Q Consensus 140 i~~~I~g---~~v~aLIDSGAt~sfIs~~~a~~l~l~~~~~~~~~V~~a~G~~-~~~~-~~~~~v~i~i~g~~~~~~f-- 212 (258)
+.+.|++ ....++||||++..++...++..+--.+... .....|.. +.|. ...+.+.+.++|..+.+..
T Consensus 320 l~I~Vgg~~~~~~~aiiDSGTt~i~lP~~~~~~i~~~i~a~----~~~~~g~y~v~C~~~~~P~itf~fgg~~i~lp~~~ 395 (451)
T 3qvc_A 320 LDVHFGNVSSKKANVILDSATSVITVPTEFFNQFVESASVF----KVPFLSLYVTTCGNTKLPTLEYRSPNKVYTLEPKQ 395 (451)
T ss_dssp EEEEETTEEEEEEEEEECTTBSSEEECHHHHHHHHTTTTCE----ECTTSSCEEEETTCTTCCCEEEEETTEEEEECHHH
T ss_pred EEEEECCccCCCceEEEeCCCccccCCHHHHHHHHHHcCCe----ecCCCCeEEeeCCcCcCCcEEEEECCEEEEEcHHH
Confidence 3356666 4678999999999999999988874332111 00001211 1221 1224566777776665432
Q ss_pred ccc---------------CCC--CccEEecchHHHhcCCeEEEeeCCEEEEee
Q 045527 213 LPL---------------DLG--ITDIIMGIHWLKTLGATHINWKTHSMKFNT 248 (258)
Q Consensus 213 ~Vl---------------~~~--~~dvILG~dwL~~~~~i~ID~~~~~v~f~~ 248 (258)
+++ +.. ....|||..||+.+- +..|+.+++|.|..
T Consensus 396 yi~~~~~~~~~~C~~~i~~~~~~~~~~ILG~~FLr~~Y-vVfD~~n~rIGfA~ 447 (451)
T 3qvc_A 396 YLEPLENIFSALCMLNIVPIDLEKNTFVLGDPFMRKYF-TVYDYDNHTVGFAL 447 (451)
T ss_dssp HEEECTTTSTTEEEECEEECCCSTTEEEECHHHHHHEE-EEEETTTTEEEEEE
T ss_pred heeecccCCCCeEEEEEEeCCCCCCCEEECHHHhhcEE-EEEECCCCEEEEEE
Confidence 121 111 235899999999999 59999999999864
No 37
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=94.59 E-value=0.011 Score=45.04 Aligned_cols=20 Identities=30% Similarity=0.707 Sum_probs=18.1
Q ss_pred cCCcceecCCCccCccccCC
Q 045527 63 ECGLCYKCDEKFSPGHRCRK 82 (258)
Q Consensus 63 ~~~lCf~Cg~~gh~~~~Cp~ 82 (258)
....||+|+++||++++||+
T Consensus 104 ~~~~Cy~Cg~~GH~a~dCp~ 123 (124)
T 2lli_A 104 HTIYCYNCGGKGHFGDDCKE 123 (124)
T ss_dssp CCCCTTTTSSSCTTTTTSCC
T ss_pred CCCCcCCCCCCCcCcccCcC
Confidence 45789999999999999995
No 38
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=94.35 E-value=0.18 Score=43.84 Aligned_cols=93 Identities=14% Similarity=0.103 Sum_probs=56.2
Q ss_pred EEEEEcCCCCccccCHHHHHHcCCCcccCCCceEeeccccc-ccccc--eEeeeeEeeeceeEEeec-----------c-
Q 045527 149 VVVLTDSGASHNFISNEVVLVLKLPITNTEPYGVILRTGSA-TKAQG--ICRGVGLILQGVEIVEDF-----------L- 213 (258)
Q Consensus 149 v~aLIDSGAt~sfIs~~~a~~l~l~~~~~~~~~V~~a~G~~-~~~~~--~~~~v~i~i~g~~~~~~f-----------~- 213 (258)
..++||||++..++...+++.+.-..... ...+|.. +.|.. ..+.+.+.++|..+.+.. +
T Consensus 208 ~~~iiDsGtt~~~lP~~~~~~i~~~~~~~-----~~~~g~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~C~~ 282 (320)
T 4aa9_A 208 CQAILDTGTSVLFGPSSDILKIQMAIGAT-----ENRYGEFDVNCGNLRSMPTVVFEINGRDYPLSPSAYTSKDQGFCTS 282 (320)
T ss_dssp EEEEECTTCSSEEEEHHHHHHHHHHTTCE-----ECTTSCEEECGGGGGGCCCEEEEETTEEEEECHHHHEEEETTEEEE
T ss_pred cEEEEECCCCcEECCHHHHHHHHHHhCCc-----ccCCCcEEEeCCCCCcCceEEEEECCEEEEECHHHhccCCCCeEEE
Confidence 47999999999999988777653211100 0011111 11111 123456666666554331 1
Q ss_pred -ccCC-CCccEEecchHHHhcCCeEEEeeCCEEEEe
Q 045527 214 -PLDL-GITDIIMGIHWLKTLGATHINWKTHSMKFN 247 (258)
Q Consensus 214 -Vl~~-~~~dvILG~dwL~~~~~i~ID~~~~~v~f~ 247 (258)
+... .+...|||..||+.+- +..|+.+++|.|.
T Consensus 283 ~i~~~~~~~~~ilG~~fl~~~y-~vfD~~~~~igfA 317 (320)
T 4aa9_A 283 GFQGDNNSELWILGDVFIREYY-SVFDRANNRVGLA 317 (320)
T ss_dssp SEEEETTCCCEEECHHHHTTEE-EEEETTTTEEEEE
T ss_pred EEEcCCCCCcEEEChHHhcceE-EEEECCCCEEEEE
Confidence 1111 1234899999999999 6999999999885
No 39
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=94.02 E-value=0.13 Score=45.16 Aligned_cols=93 Identities=12% Similarity=0.068 Sum_probs=55.1
Q ss_pred EEEEEEcCCCCccccCHH----HHHHcCCCcccCCCceEeecccccccccce-EeeeeEeeeceeEEee-----------
Q 045527 148 KVVVLTDSGASHNFISNE----VVLVLKLPITNTEPYGVILRTGSATKAQGI-CRGVGLILQGVEIVED----------- 211 (258)
Q Consensus 148 ~v~aLIDSGAt~sfIs~~----~a~~l~l~~~~~~~~~V~~a~G~~~~~~~~-~~~v~i~i~g~~~~~~----------- 211 (258)
...++||||++..++... +++.+.-.......+.+ .|... .+.+.+.++|..+.+.
T Consensus 212 ~~~~iiDSGTs~~~lP~~~~~~~~~~~~~~~~~~g~~~~--------~C~~~~~p~i~f~f~g~~~~ip~~~~~~~~~~~ 283 (325)
T 2apr_A 212 SFDGILDTGTTLLILPNNIAASVARAYGASDNGDGTYTI--------SCDTSAFKPLVFSINGASFQVSPDSLVFEEFQG 283 (325)
T ss_dssp CEEEEECTTCSSEEEEHHHHHHHHHHHTCEECSSSCEEE--------CSCGGGCCCEEEEETTEEEEECGGGGEEEEETT
T ss_pred CceEEEecCCccEECCHHHHHHHHHHHhcccCCCCeEEE--------ECCCCCCCcEEEEECCEEEEECHHHEEEcCCCC
Confidence 357999999999999999 77766543211111111 11100 1234444443332211
Q ss_pred -cc--ccCCCCccEEecchHHHhcCCeEEEeeCCEEEEeeC
Q 045527 212 -FL--PLDLGITDIIMGIHWLKTLGATHINWKTHSMKFNTR 249 (258)
Q Consensus 212 -f~--Vl~~~~~dvILG~dwL~~~~~i~ID~~~~~v~f~~~ 249 (258)
++ +.....-..|||..||+.+- +..|+.+++|.|...
T Consensus 284 ~C~~~i~~~~~~~~iLG~~fl~~~y-~vfD~~~~~igfA~~ 323 (325)
T 2apr_A 284 QCIAGFGYGNWGFAIIGDTFLKNNY-VVFNQGVPEVQIAPV 323 (325)
T ss_dssp EEEESEEEESSSSEEECHHHHTTEE-EEEETTTTEEEEEEB
T ss_pred eEEEEEEcCCCCCEEECHHHhcceE-EEEECCCCEEEEEec
Confidence 11 11111335899999999999 699999999998753
No 40
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=93.90 E-value=0.14 Score=45.19 Aligned_cols=96 Identities=16% Similarity=0.179 Sum_probs=55.6
Q ss_pred EEEEEcCCCCccccCHHHHHHcCCCcccCCCceEeecccc-ccccc--ceEeeeeEeeeceeEEee--------------
Q 045527 149 VVVLTDSGASHNFISNEVVLVLKLPITNTEPYGVILRTGS-ATKAQ--GICRGVGLILQGVEIVED-------------- 211 (258)
Q Consensus 149 v~aLIDSGAt~sfIs~~~a~~l~l~~~~~~~~~V~~a~G~-~~~~~--~~~~~v~i~i~g~~~~~~-------------- 211 (258)
..++||||++..++...+++.+.-.... ......|. .+.|. .....+.+.++|..+.+.
T Consensus 207 ~~aiiDSGTt~~~lP~~~~~~l~~~~~a----~~~~~~g~~~~~C~~~~~~p~i~f~f~g~~~~i~~~~yi~~~~~~~~~ 282 (340)
T 1wkr_A 207 TAGIVDTGTTLTLIASDAFAKYKKATGA----VADNNTGLLRLTTAQYANLQSLFFTIGGQTFELTANAQIWPRNLNTAI 282 (340)
T ss_dssp EEEEECTTBCSEEECHHHHHHHHHHHTC----EECTTTSSEEECHHHHHTCCCEEEEETTEEEEECTGGGBCCGGGGGGG
T ss_pred CeEEEeCCcccccCCHHHHHHHHHhhCC----EEcCCCCeEEeeccccccCCcEEEEECCEEEEEcHHHhcccccccccc
Confidence 4799999999999999888876211100 00000110 11111 011244555555544321
Q ss_pred --------ccccCCC-----CccEEecchHHHhcCCeEEEeeCCEEEEeeC
Q 045527 212 --------FLPLDLG-----ITDIIMGIHWLKTLGATHINWKTHSMKFNTR 249 (258)
Q Consensus 212 --------f~Vl~~~-----~~dvILG~dwL~~~~~i~ID~~~~~v~f~~~ 249 (258)
+.+.++. +...|||..||+.+- +..|+.+++|.|...
T Consensus 283 g~~~~~c~~~~~~~~~~~~~~~~~iLG~~fl~~~y-~vfD~~~~~igfA~~ 332 (340)
T 1wkr_A 283 GGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFY-SVYDTTNKRLGLATT 332 (340)
T ss_dssp TCCSSCEEBCEEECSSCTTSSCCEEECHHHHTSEE-EEEETTTTEEEEEEC
T ss_pred CCCCceEEEEEecCCCCCCCCcceEeChHhhhheE-EEEeCCCCeEEEEec
Confidence 0111111 234899999999999 699999999998753
No 41
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=93.84 E-value=0.12 Score=45.16 Aligned_cols=100 Identities=13% Similarity=0.119 Sum_probs=59.8
Q ss_pred EEECCEE-----EEEEEcCCCCccccCHHHHHHcCCCcccCCCceEeeccccc-ccccc--eEeeeeEeeeceeEEee--
Q 045527 142 SEINNKK-----VVVLTDSGASHNFISNEVVLVLKLPITNTEPYGVILRTGSA-TKAQG--ICRGVGLILQGVEIVED-- 211 (258)
Q Consensus 142 ~~I~g~~-----v~aLIDSGAt~sfIs~~~a~~l~l~~~~~~~~~V~~a~G~~-~~~~~--~~~~v~i~i~g~~~~~~-- 211 (258)
+.|++.. ..++||||++..++...+++.+.-..... ..+|.. +.|.. ..+.+.+.++|..+.+.
T Consensus 197 i~v~~~~~~~~~~~aiiDSGTt~~~lp~~~~~~l~~~~~~~------~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~ 270 (324)
T 1am5_A 197 ITVNGQTAACEGCQAIVDTGTSKIVAPVSALANIMKDIGAS------ENQGEMMGNCASVQSLPDITFTINGVKQPLPPS 270 (324)
T ss_dssp EEETTEECCCCCEEEEECTTCSSEEECTTTHHHHHHHHTCE------ECCCCEECCTTSSSSSCCEEEEETTEEEEECHH
T ss_pred EEECCceeeccCceEEEecCCccEECCHHHHHHHHHHhCCc------ccCCcEEEeCCCcccCCcEEEEECCEEEEECHH
Confidence 3455544 67999999999999987776552211100 112211 11211 12345666666555432
Q ss_pred ---------cc--ccCC-----CCccEEecchHHHhcCCeEEEeeCCEEEEee
Q 045527 212 ---------FL--PLDL-----GITDIIMGIHWLKTLGATHINWKTHSMKFNT 248 (258)
Q Consensus 212 ---------f~--Vl~~-----~~~dvILG~dwL~~~~~i~ID~~~~~v~f~~ 248 (258)
++ +.+. .....|||..||+.+- +..|+.+++|.|..
T Consensus 271 ~y~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y-~vfD~~~~~igfa~ 322 (324)
T 1am5_A 271 AYIEGDQAFCTSGLGSSGVPSNTSELWIFGDVFLRNYY-TIYDRTNNKVGFAP 322 (324)
T ss_dssp HHEEESSSCEEECEEECCSCCSSSCEEEECHHHHHHEE-EEEETTTTEEEEEE
T ss_pred HhcccCCCeEEEEEEECccCCCCCCcEEEChHHhccEE-EEEECCCCEEEEEE
Confidence 11 2121 1335899999999999 69999999998864
No 42
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=93.74 E-value=0.3 Score=43.75 Aligned_cols=102 Identities=13% Similarity=0.108 Sum_probs=59.4
Q ss_pred EEECCE---EEEEEEcCCCCccccCHHHHHHcCCCcccCCCceEeeccccc-ccccc-eEeeeeEeeeceeEEee-----
Q 045527 142 SEINNK---KVVVLTDSGASHNFISNEVVLVLKLPITNTEPYGVILRTGSA-TKAQG-ICRGVGLILQGVEIVED----- 211 (258)
Q Consensus 142 ~~I~g~---~v~aLIDSGAt~sfIs~~~a~~l~l~~~~~~~~~V~~a~G~~-~~~~~-~~~~v~i~i~g~~~~~~----- 211 (258)
+.|++. ...++||||++..++...+++.+.-..... ....+|.. +.|.. ..+.+.+.++|..+.+.
T Consensus 247 i~v~g~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~----~~~~~g~~~~~C~~~~~P~i~f~f~g~~~~l~~~~yi 322 (375)
T 1miq_A 247 VHFGKQTMEKANVIVDSGTTTITAPSEFLNKFFANLNVI----KVPFLPFYVTTCDNKEMPTLEFKSANNTYTLEPEYYM 322 (375)
T ss_dssp EEETTEEEEEEEEEECTTBSSEEECHHHHHHHHHHHTCE----ECTTSSCEEEETTCTTCCCEEEECSSCEEEECGGGSE
T ss_pred EEECCEEcccceEEecCCCccEEcCHHHHHHHHHHhCCc----ccCCCCeEEEECCCCCCCcEEEEECCEEEEECHHHhE
Confidence 667774 568999999999999998877652211110 00011110 11110 11334455554443321
Q ss_pred ----------c--cccCCC--CccEEecchHHHhcCCeEEEeeCCEEEEee
Q 045527 212 ----------F--LPLDLG--ITDIIMGIHWLKTLGATHINWKTHSMKFNT 248 (258)
Q Consensus 212 ----------f--~Vl~~~--~~dvILG~dwL~~~~~i~ID~~~~~v~f~~ 248 (258)
+ .+.+.. ....|||..||+.+- +..|+.+.+|.|..
T Consensus 323 ~~~~~~g~~~C~~~~~~~~~~~~~~ILG~~fl~~~y-vvfD~~~~riGfA~ 372 (375)
T 1miq_A 323 NPILEVDDTLCMITMLPVDIDSNTFILGDPFMRKYF-TVFDYDKESVGFAI 372 (375)
T ss_dssp EESSSSSCSEEEESEEECCSSSSEEEECHHHHHHEE-EEEETTTTEEEEEE
T ss_pred eeccCCCCCeEEEEEEECCCCCCcEEECHHHhccEE-EEEECCCCEEEEEE
Confidence 1 111221 135899999999999 69999999998864
No 43
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=93.71 E-value=0.22 Score=43.61 Aligned_cols=101 Identities=10% Similarity=0.059 Sum_probs=58.8
Q ss_pred EEECCEEE-----EEEEcCCCCccccCHHHHHHcCCCcccCCCceEeeccccc-ccccc--eEeeeeEeeeceeEEee--
Q 045527 142 SEINNKKV-----VVLTDSGASHNFISNEVVLVLKLPITNTEPYGVILRTGSA-TKAQG--ICRGVGLILQGVEIVED-- 211 (258)
Q Consensus 142 ~~I~g~~v-----~aLIDSGAt~sfIs~~~a~~l~l~~~~~~~~~V~~a~G~~-~~~~~--~~~~v~i~i~g~~~~~~-- 211 (258)
+.|++..+ .++||||++..++...+++.+.-..... ...+|.. +.|.. ..+.+.+.++|..+.+.
T Consensus 201 i~v~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~-----~~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~ 275 (329)
T 1dpj_A 201 IGLGDEYAELESHGAAIDTGTSLITLPSGLAEMINAEIGAK-----KGWTGQYTLDCNTRDNLPDLIFNFNGYNFTIGPY 275 (329)
T ss_dssp EEETTEEEECSSCEEEECTTCSCEEECHHHHHHHHHHHTCE-----ECTTSSEEECGGGGGGCCCEEEEETTEEEEECTT
T ss_pred EEECCeEecCCCccEEeeCCCCcEECCHHHHHHHHHHhCCc-----cCCCCeEEEECCCCCcCCcEEEEECCEEEEECHH
Confidence 45666543 5999999999999998877653211100 0011111 11110 11344555555444321
Q ss_pred ---------cc--ccCC-----CCccEEecchHHHhcCCeEEEeeCCEEEEee
Q 045527 212 ---------FL--PLDL-----GITDIIMGIHWLKTLGATHINWKTHSMKFNT 248 (258)
Q Consensus 212 ---------f~--Vl~~-----~~~dvILG~dwL~~~~~i~ID~~~~~v~f~~ 248 (258)
++ +.+. .+...|||..||+.+- +..|+.+++|-|..
T Consensus 276 ~y~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y-~vfD~~~~~igfA~ 327 (329)
T 1dpj_A 276 DYTLEVSGSCISAITPMDFPEPVGPLAIVGDAFLRKYY-SIYDLGNNAVGLAK 327 (329)
T ss_dssp TSEEEETTEEEECEEECCCCTTTCSEEEECHHHHTTEE-EEEETTTTEEEEEE
T ss_pred HhEecCCCEEEEEEEecccCCCCCCcEEEChHHhcceE-EEEECCCCEEEEEE
Confidence 11 1121 1235899999999999 69999999998863
No 44
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=93.55 E-value=0.18 Score=44.60 Aligned_cols=103 Identities=12% Similarity=0.132 Sum_probs=59.1
Q ss_pred EEECCEE------EEEEEcCCCCccccCHHHHHHcCCCcccCCCceEeeccccc-ccccc--eEeeeeEeeeceeEEee-
Q 045527 142 SEINNKK------VVVLTDSGASHNFISNEVVLVLKLPITNTEPYGVILRTGSA-TKAQG--ICRGVGLILQGVEIVED- 211 (258)
Q Consensus 142 ~~I~g~~------v~aLIDSGAt~sfIs~~~a~~l~l~~~~~~~~~V~~a~G~~-~~~~~--~~~~v~i~i~g~~~~~~- 211 (258)
+.|++.. ..++||||++..++....++.+.-...... .. |.. +.|.. ..+.+.+.++|..+.+.
T Consensus 210 i~v~~~~~~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~-----~~-g~~~~~C~~~~~~P~i~f~f~g~~~~i~~ 283 (351)
T 1tzs_A 210 IQVGGTVMFCSEGCQAIVDTGTSLITGPSDKIKQLQNAIGAAP-----VD-GEYAVECANLNVMPDVTFTINGVPYTLSP 283 (351)
T ss_dssp EEETTEEEECTTCEEEEECTTCSSEEECHHHHHHHHHHHTCEE-----CS-SSEEECGGGGGGSCCEEEEETTEEEEECT
T ss_pred EEECCceEEcCCCceEEeccCCcceeCCHHHHHHHHHHhCCcc-----cC-CeEEEeCCCCccCCcEEEEECCEEEEECH
Confidence 4566655 479999999999999988776522110000 00 110 11110 11234444444433321
Q ss_pred --------------cc--ccCC-----CCccEEecchHHHhcCCeEEEeeCCEEEEeeCCe
Q 045527 212 --------------FL--PLDL-----GITDIIMGIHWLKTLGATHINWKTHSMKFNTRNT 251 (258)
Q Consensus 212 --------------f~--Vl~~-----~~~dvILG~dwL~~~~~i~ID~~~~~v~f~~~~~ 251 (258)
++ +.+. .....|||..||+.+- +..|+.+++|.|.....
T Consensus 284 ~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y-~vfD~~~~rigfA~~~~ 343 (351)
T 1tzs_A 284 TAYTLLDFVDGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFY-SVFDRGNNRVGLAPAVP 343 (351)
T ss_dssp TTSEECC-----CCEEESEEECCCCTTTCSCEEECHHHHHHEE-EEEETTTTEEEEEEBC-
T ss_pred HHhEeeccCCCCCeEEEEEEECCCCCCCCCeEEEChHHhhheE-EEEECCCCEEEEEECCc
Confidence 11 1111 1335899999999999 69999999999986543
No 45
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=93.51 E-value=0.074 Score=41.77 Aligned_cols=19 Identities=21% Similarity=0.571 Sum_probs=16.7
Q ss_pred CCcceecCCCccCccccCC
Q 045527 64 CGLCYKCDEKFSPGHRCRK 82 (258)
Q Consensus 64 ~~lCf~Cg~~gh~~~~Cp~ 82 (258)
...||+|++.||.+..||.
T Consensus 97 ~~~C~~Cg~~GH~a~~C~~ 115 (148)
T 3ts2_A 97 GDRCYNCGGLDHHAKECKL 115 (148)
T ss_dssp SCCCTTTCCSSCCGGGCCS
T ss_pred CCcccEeCCccchhhhCCC
Confidence 4569999999999999986
No 46
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=93.48 E-value=0.17 Score=44.40 Aligned_cols=94 Identities=15% Similarity=0.120 Sum_probs=57.4
Q ss_pred EEEEEcCCCCccccCHHHHHHcCCCcccCCCceEeecccccccccc--eEeeeeEeeeceeEEeec--cccCC-------
Q 045527 149 VVVLTDSGASHNFISNEVVLVLKLPITNTEPYGVILRTGSATKAQG--ICRGVGLILQGVEIVEDF--LPLDL------- 217 (258)
Q Consensus 149 v~aLIDSGAt~sfIs~~~a~~l~l~~~~~~~~~V~~a~G~~~~~~~--~~~~v~i~i~g~~~~~~f--~Vl~~------- 217 (258)
..++||||++..++...+++.+.-..... ...+|-.+.+.. ..+.+.+.++|..+.+.. ++++.
T Consensus 221 ~~~iiDsGtt~~~lP~~~~~~i~~~~~~~-----~~~~g~~~~C~~~~~~p~i~f~f~g~~~~l~~~~~~~~~~~~~~~~ 295 (341)
T 3k1w_A 221 CLALVDTGASYISGSTSSIEKLMEALGAK-----KRLFDYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKL 295 (341)
T ss_dssp EEEEECTTCSSEEECHHHHHHHHHHHTCE-----ECSSCEEEEGGGGGGCCCEEEEETTEEEEECHHHHBCCSCCCTTSE
T ss_pred CEEEEECCCChhcCCHHHHHHHHHHcCCe-----ecCCCeEEeCCCCCcCCcEEEEECCEEEEECHHHheeEccCCCCCe
Confidence 57999999999999998777653211100 001121111211 123556666766655431 12110
Q ss_pred -------------CCccEEecchHHHhcCCeEEEeeCCEEEEee
Q 045527 218 -------------GITDIIMGIHWLKTLGATHINWKTHSMKFNT 248 (258)
Q Consensus 218 -------------~~~dvILG~dwL~~~~~i~ID~~~~~v~f~~ 248 (258)
.....|||..||+.+- +..|+.+++|.|..
T Consensus 296 C~~~i~~~~~~~~~~~~~iLG~~fl~~~y-~vfD~~~~~igfA~ 338 (341)
T 3k1w_A 296 CTLAIHAMDIPPPTGPTWALGATFIRKFY-TEFDRRNNRIGFAL 338 (341)
T ss_dssp EEBSEEECCCCTTTCSCEEECHHHHTTEE-EEEETTTTEEEEEE
T ss_pred EEeEEEecccCCCCCCeEEEChHHhcceE-EEEeCCCCEEEEEE
Confidence 1235899999999999 69999999998864
No 47
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=93.40 E-value=0.1 Score=45.95 Aligned_cols=101 Identities=12% Similarity=0.170 Sum_probs=62.5
Q ss_pred EEECCEE-----EEEEEcCCCCccccCHHHHHHcCCCcccCCCceEeeccc--c--cccccc--eEeeeeEeeeceeEEe
Q 045527 142 SEINNKK-----VVVLTDSGASHNFISNEVVLVLKLPITNTEPYGVILRTG--S--ATKAQG--ICRGVGLILQGVEIVE 210 (258)
Q Consensus 142 ~~I~g~~-----v~aLIDSGAt~sfIs~~~a~~l~l~~~~~~~~~V~~a~G--~--~~~~~~--~~~~v~i~i~g~~~~~ 210 (258)
+.|++.. ..++||||++..++...+++.+.-.+... ...+| . .+.|.. ..+.+.+.++|..+.+
T Consensus 202 i~v~~~~~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~-----~~~~g~~~~~~~~C~~~~~~p~i~f~fgg~~~~l 276 (330)
T 1yg9_A 202 VKIGDTTVAPAGTQAIIDTSKAIIVGPKAYVNPINEAIGCV-----VEKTTTRRICKLDCSKIPSLPDVTFVINGRNFNI 276 (330)
T ss_dssp EEETTEEEECTTCEEEECTTCSSEEEEHHHHHHHHHHHTCE-----EEECSSCEEEEECGGGGGGSCCEEEEETTEEEEE
T ss_pred EEECCEEEcCCCcEEEEecCCccccCCHHHHHHHHHHhCCc-----ccCCCceEEEEEECCCccccCcEEEEECCEEEEE
Confidence 4556654 46999999999999998877653221110 01122 1 122221 1245667777766653
Q ss_pred e-----------cc--ccCC-CCccEEecchHHHhcCCeEEEeeCCEEEEee
Q 045527 211 D-----------FL--PLDL-GITDIIMGIHWLKTLGATHINWKTHSMKFNT 248 (258)
Q Consensus 211 ~-----------f~--Vl~~-~~~dvILG~dwL~~~~~i~ID~~~~~v~f~~ 248 (258)
. ++ +.+. .....|||..||+.+- +..|+.+++|.|..
T Consensus 277 ~~~~y~~~~~~~C~~~i~~~~~~~~~ilG~~fl~~~y-~vfD~~~~riGfA~ 327 (330)
T 1yg9_A 277 SSQYYIQQNGNLCYSGFQPCGHSDHFFIGDFFVDHYY-SEFNWENKTMGFGR 327 (330)
T ss_dssp CHHHHEEEETTEEEESEEEETTCSSEEECHHHHTTEE-EEEETTTTEEEEEE
T ss_pred CHHHhcccCCCcEEEEEEeCCCCCeEEecHHHhhheE-EEEECCCCEEEEEE
Confidence 2 11 1221 1235899999999999 59999999998864
No 48
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=93.36 E-value=0.026 Score=44.44 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=18.0
Q ss_pred CCcceecCCCccCccccCCc
Q 045527 64 CGLCYKCDEKFSPGHRCRKQ 83 (258)
Q Consensus 64 ~~lCf~Cg~~gh~~~~Cp~k 83 (258)
...||+|++.||++++||.+
T Consensus 119 ~~~C~~Cg~~GH~~r~Cp~~ 138 (148)
T 3ts2_A 119 PKKCHFCQSINHMVASCPLK 138 (148)
T ss_dssp CCCCTTTCCSSCCGGGCTTT
T ss_pred CCcccccCCcCCEeccCcCC
Confidence 46799999999999999964
No 49
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=93.33 E-value=0.024 Score=40.13 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=16.6
Q ss_pred CCcceecCCCccCccccCCc
Q 045527 64 CGLCYKCDEKFSPGHRCRKQ 83 (258)
Q Consensus 64 ~~lCf~Cg~~gh~~~~Cp~k 83 (258)
...||+|+++||.+.+||..
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp~~ 24 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCPSI 24 (83)
T ss_dssp --CCSSSCCSSSCGGGCGGG
T ss_pred cCCCCCCCCCCCccccCCCc
Confidence 35699999999999999964
No 50
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=93.32 E-value=0.33 Score=42.39 Aligned_cols=98 Identities=12% Similarity=0.077 Sum_probs=59.8
Q ss_pred EEEEEEEcCCCCccccCHHHHHHcCCCcccCCCceEeeccccc-ccccceEeeeeEeeeceeEEeec--c----------
Q 045527 147 KKVVVLTDSGASHNFISNEVVLVLKLPITNTEPYGVILRTGSA-TKAQGICRGVGLILQGVEIVEDF--L---------- 213 (258)
Q Consensus 147 ~~v~aLIDSGAt~sfIs~~~a~~l~l~~~~~~~~~V~~a~G~~-~~~~~~~~~v~i~i~g~~~~~~f--~---------- 213 (258)
....++||||++..++...+++.+.-.+... .....+|.. +.|....+.+.+.++|..+.+.. +
T Consensus 206 ~~~~aiiDSGTs~~~lP~~~~~~l~~~i~~a---~~~~~~g~~~~~C~~~~P~i~f~fgg~~~~l~~~~~~~~~~~~~~~ 282 (323)
T 1bxo_A 206 DGFSGIADTGTTLLLLDDSVVSQYYSQVSGA---QQDSNAGGYVFDCSTNLPDFSVSISGYTATVPGSLINYGPSGDGST 282 (323)
T ss_dssp EEEEEEECTTCSSEEECHHHHHHHHTTSTTC---EEETTTTEEEECTTCCCCCEEEEETTEEEEECHHHHEEEECSSSSC
T ss_pred CCceEEEeCCCCceeCCHHHHHHHHHhCCCc---eEcCcCCEEEEECCCCCceEEEEECCEEEEECHHHeEEeccCCCCe
Confidence 4578999999999999999988774332110 000111211 22222223556666665554321 1
Q ss_pred ----ccCCC-CccEEecchHHHhcCCeEEEeeCCEEEEee
Q 045527 214 ----PLDLG-ITDIIMGIHWLKTLGATHINWKTHSMKFNT 248 (258)
Q Consensus 214 ----Vl~~~-~~dvILG~dwL~~~~~i~ID~~~~~v~f~~ 248 (258)
+.+.. .-..|||..||+.+- +..|+.+++|-|..
T Consensus 283 C~~~i~~~~~~~~~ILG~~fl~~~y-~vfD~~~~riGfA~ 321 (323)
T 1bxo_A 283 CLGGIQSNSGIGFSIFGDIFLKSQY-VVFDSDGPQLGFAP 321 (323)
T ss_dssp EEESEEECTTCSSEEECHHHHTTEE-EEEETTTTEEEEEE
T ss_pred EEEEEECCCCCCcEEEChHHHcCEE-EEEECCCCEEEEec
Confidence 11111 235899999999999 59999999998863
No 51
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=93.29 E-value=0.11 Score=45.70 Aligned_cols=97 Identities=14% Similarity=0.105 Sum_probs=56.2
Q ss_pred EEEEEcCCCCccccCHHHHHHcCCCcccCCCce-Eeecccc-cccccc-eEeeeeEeee-ceeEEee--ccccCCC----
Q 045527 149 VVVLTDSGASHNFISNEVVLVLKLPITNTEPYG-VILRTGS-ATKAQG-ICRGVGLILQ-GVEIVED--FLPLDLG---- 218 (258)
Q Consensus 149 v~aLIDSGAt~sfIs~~~a~~l~l~~~~~~~~~-V~~a~G~-~~~~~~-~~~~v~i~i~-g~~~~~~--f~Vl~~~---- 218 (258)
..++||||++..++...+++.+.-..... +. .....|. .+.|.. ....+.+.++ +..+.+. -++++..
T Consensus 215 ~~~iiDSGtt~~~lP~~~~~~i~~~~~~~--~~~~~~~~~~~~~~C~~~~~p~i~f~f~~g~~~~v~~~~~~~~~~~~~C 292 (339)
T 3fv3_A 215 DGALLDSGTTLTYFPSDFAAQLADKAGAR--LVQVARDQYLYFIDCNTDTSGTTVFNFGNGAKITVPNTEYVYQNGDGTC 292 (339)
T ss_dssp EEEEECTTBSSEEECHHHHHHHHHHHTCE--EEEEETTEEEEEECTTCCCCSEEEEEETTSCEEEEEGGGGEEECSSSCE
T ss_pred ccEEEeCCCCCEecCHHHHHHHHHHcCCE--EccccccCceEEEecCCCCCCcEEEEECCCCEEEECHHHheeeCCCCeE
Confidence 46999999999999998877653222110 00 0001111 111211 1234556663 5444432 2222211
Q ss_pred ------CccEEecchHHHhcCCeEEEeeCCEEEEee
Q 045527 219 ------ITDIIMGIHWLKTLGATHINWKTHSMKFNT 248 (258)
Q Consensus 219 ------~~dvILG~dwL~~~~~i~ID~~~~~v~f~~ 248 (258)
.-..|||..||+.+- +..|+.+++|.|..
T Consensus 293 ~~~i~~~~~~ilG~~fl~~~y-~vfD~~~~~igfA~ 327 (339)
T 3fv3_A 293 LWGIQPSDDTILGDNFLRHAY-LLYNLDANTISIAQ 327 (339)
T ss_dssp EESEEECSSCEECHHHHTTEE-EEEETTTTEEEEEE
T ss_pred EEEEEeCCcEEeChHHHhCEE-EEEECCCCEEEEEe
Confidence 123799999999999 69999999999874
No 52
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=93.27 E-value=0.43 Score=41.74 Aligned_cols=98 Identities=15% Similarity=0.100 Sum_probs=58.7
Q ss_pred EEEEEEEcCCCCccccCHHHHHHcCCCcccCCCceEeeccccc-ccccceEeeeeEeeeceeEEee--------------
Q 045527 147 KKVVVLTDSGASHNFISNEVVLVLKLPITNTEPYGVILRTGSA-TKAQGICRGVGLILQGVEIVED-------------- 211 (258)
Q Consensus 147 ~~v~aLIDSGAt~sfIs~~~a~~l~l~~~~~~~~~V~~a~G~~-~~~~~~~~~v~i~i~g~~~~~~-------------- 211 (258)
....++||||++..++...+++.+.-.+... .....+|.. +.|....+.+.+.++|..+.+.
T Consensus 211 ~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~a---~~~~~~g~~~~~C~~~~P~i~f~fgg~~~~ip~~~~~~~~~~~~~~ 287 (329)
T 1oew_A 211 TSIDGIADTGTTLLYLPATVVSAYWAQVSGA---KSSSSVGGYVFPCSATLPSFTFGVGSARIVIPGDYIDFGPISTGSS 287 (329)
T ss_dssp EEEEEEECTTCCSEEECHHHHHHHHTTSTTC---EEETTTTEEEEETTCCCCCEEEEETTEEEEECHHHHEEEESSTTCS
T ss_pred CCceEEEeCCCCCEECCHHHHHHHHHhCCCc---EEcCCCCEEEEECCCCCCcEEEEECCEEEEECHHHeeeeecCCCCC
Confidence 3568999999999999999988774332110 000011211 1222222345566666554322
Q ss_pred -cc--ccCCC-CccEEecchHHHhcCCeEEEe-eCCEEEEee
Q 045527 212 -FL--PLDLG-ITDIIMGIHWLKTLGATHINW-KTHSMKFNT 248 (258)
Q Consensus 212 -f~--Vl~~~-~~dvILG~dwL~~~~~i~ID~-~~~~v~f~~ 248 (258)
++ +.+.. ....|||..||+.+- +..|+ .+++|-|..
T Consensus 288 ~C~~~i~~~~~~~~~iLG~~fl~~~y-~vfD~~~~~riGfA~ 328 (329)
T 1oew_A 288 SCFGGIQSSAGIGINIFGDVALKAAF-VVFNGATTPTLGFAS 328 (329)
T ss_dssp EEEESEEESTTTSSEEECHHHHTTEE-EEEECSSSCEEEEEE
T ss_pred eEEEEEEeCCCCCceEEChHHhcCEE-EEEECCCCceEEEec
Confidence 11 11111 235899999999999 69999 999998863
No 53
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=92.86 E-value=0.52 Score=43.58 Aligned_cols=101 Identities=13% Similarity=0.157 Sum_probs=63.0
Q ss_pred EEECCE---EEEEEEcCCCCccccCHHHHHHcCCCcccCCCceEeeccc-c-cccccc-eEeeeeEeeeceeEEee----
Q 045527 142 SEINNK---KVVVLTDSGASHNFISNEVVLVLKLPITNTEPYGVILRTG-S-ATKAQG-ICRGVGLILQGVEIVED---- 211 (258)
Q Consensus 142 ~~I~g~---~v~aLIDSGAt~sfIs~~~a~~l~l~~~~~~~~~V~~a~G-~-~~~~~~-~~~~v~i~i~g~~~~~~---- 211 (258)
+.|++. ...++||||++..++...+++.+.-..... ...+| . .+.|.. ..+.+.+.++|..+.+.
T Consensus 323 I~Vgg~~~~~~~aIiDSGTsl~~lP~~~~~~l~~~i~~~-----~~~~g~~~~v~C~~~~~P~itf~fgg~~~~l~~~~y 397 (453)
T 2bju_A 323 AHVGNIMLEKANCIVDSGTSAITVPTDFLNKMLQNLDVI-----KVPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYY 397 (453)
T ss_dssp EEETTEEEEEEEEEECTTCCSEEECHHHHHHHTTTSSCE-----ECTTSSCEEEETTCTTCCCEEEECSSCEEEECHHHH
T ss_pred EEECcEEeccccEEEcCCCCeEecCHHHHHHHHHHhCCc-----ccCCCceEEEecCCCCCCcEEEEECCEEEEECHHHh
Confidence 556662 367999999999999999999875433211 01122 1 111211 12345666666554432
Q ss_pred -----------cc--ccCCC--CccEEecchHHHhcCCeEEEeeCCEEEEee
Q 045527 212 -----------FL--PLDLG--ITDIIMGIHWLKTLGATHINWKTHSMKFNT 248 (258)
Q Consensus 212 -----------f~--Vl~~~--~~dvILG~dwL~~~~~i~ID~~~~~v~f~~ 248 (258)
++ +.+.. ....|||..||+.+- +..|+.+.+|.|..
T Consensus 398 i~~~~~~g~~~C~~~~~~~~~~~~~~ILGd~Flr~~y-vVFD~~n~rIGfA~ 448 (453)
T 2bju_A 398 LQHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYF-TVFDYDNHSVGIAL 448 (453)
T ss_dssp EEECTTTSTTEEEECEEECCCSSCEEEECHHHHHHEE-EEEETTTTEEEEEE
T ss_pred EeecccCCCceEEEEEEeCCCCCCCEEECHHHhhcEE-EEEECCCCEEEEEE
Confidence 11 11111 125899999999999 69999999999874
No 54
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=92.79 E-value=0.22 Score=43.64 Aligned_cols=98 Identities=10% Similarity=0.078 Sum_probs=59.5
Q ss_pred EEEEEEEcCCCCccccCHHHHHHcCCCcccCCCceEeecccc-cccccceEeeeeEeeeceeEEeec-------------
Q 045527 147 KKVVVLTDSGASHNFISNEVVLVLKLPITNTEPYGVILRTGS-ATKAQGICRGVGLILQGVEIVEDF------------- 212 (258)
Q Consensus 147 ~~v~aLIDSGAt~sfIs~~~a~~l~l~~~~~~~~~V~~a~G~-~~~~~~~~~~v~i~i~g~~~~~~f------------- 212 (258)
....++||||++..++...+++.+.-.+... .....+|. .+.|....+.+.+.++|..+.+..
T Consensus 207 ~~~~aiiDSGTs~~~lp~~~~~~i~~~i~ga---~~~~~~g~~~~~C~~~~P~i~f~fgg~~~~i~~~~~~~~~~~~~~C 283 (323)
T 1izd_A 207 DSITGIADTGTTLLLLDDSIVDAYYEQVNGA---SYDSSQGGYVFPSSASLPDFSVTIGDYTATVPGEYISFADVGNGQT 283 (323)
T ss_dssp CCEEEEECTTCCSEEECHHHHHHHHTTSTTC---EEETTTTEEEEETTCCCCCEEEEETTEEEEECHHHHEEEECSTTEE
T ss_pred CCceEEEeCCCcceeCCHHHHHHHHHhCCCc---EEcCcCCEEEEECCCCCceEEEEECCEEEecCHHHeEEecCCCCeE
Confidence 3467999999999999999988774332110 00001121 112222223556666665554321
Q ss_pred c--ccCCC-CccEEecchHHHhcCCeEEEeeCCEEEEee
Q 045527 213 L--PLDLG-ITDIIMGIHWLKTLGATHINWKTHSMKFNT 248 (258)
Q Consensus 213 ~--Vl~~~-~~dvILG~dwL~~~~~i~ID~~~~~v~f~~ 248 (258)
+ +.+.. ....|||..||+.+- +..|+.+++|-|..
T Consensus 284 ~~~i~~~~~~~~~IlG~~fl~~~y-~vfD~~~~riGfA~ 321 (323)
T 1izd_A 284 FGGIQSNSGIGFSIFGDVFLKSQY-VVFDASGPRLGFAA 321 (323)
T ss_dssp EESEEECTTTSSEEECHHHHTTEE-EEEETTTTEEEEEE
T ss_pred EEEEEcCCCCCcEEEChHHhcCEE-EEEECCCCEEEEee
Confidence 1 11111 235899999999999 59999999998863
No 55
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=92.69 E-value=0.56 Score=41.05 Aligned_cols=95 Identities=14% Similarity=0.140 Sum_probs=54.7
Q ss_pred EEEEEcCCCCccccCHHHHHHcCCCcccCCCceEeecccc---cccccceEeeeeEeee-ceeEEee--ccccCC-----
Q 045527 149 VVVLTDSGASHNFISNEVVLVLKLPITNTEPYGVILRTGS---ATKAQGICRGVGLILQ-GVEIVED--FLPLDL----- 217 (258)
Q Consensus 149 v~aLIDSGAt~sfIs~~~a~~l~l~~~~~~~~~V~~a~G~---~~~~~~~~~~v~i~i~-g~~~~~~--f~Vl~~----- 217 (258)
..++||||++..++...+++.+.-..... ......|. .+.|... ..+.+.++ |..+.+. -++++.
T Consensus 213 ~~~iiDSGtt~~~lP~~~~~~i~~~~~~~---~~~~~~~~~~~~~~C~~~-p~i~f~f~~g~~~~vp~~~~~~~~~~~~g 288 (342)
T 3pvk_A 213 VDVLLDSGTTITYLQQDLADQIIKAFNGK---LTQDSNGNSFYEVDCNLS-GDVVFNFSKNAKISVPASEFAASLQGDDG 288 (342)
T ss_dssp EEEEECTTCSSEEECHHHHHHHHHHTTCE---EEECTTSCEEEEECSCCC-SEEEEEESTTCEEEEEGGGGEEC------
T ss_pred ceEEEeCCCCCeecCHHHHHHHHHHcCCe---ecccCCCceEEEEecCCC-CceEEEECCCCEEEEcHHHheeeccccCC
Confidence 57999999999999998877763221110 00000110 1112111 34455554 3333322 122220
Q ss_pred -----------CCccEEecchHHHhcCCeEEEeeCCEEEEee
Q 045527 218 -----------GITDIIMGIHWLKTLGATHINWKTHSMKFNT 248 (258)
Q Consensus 218 -----------~~~dvILG~dwL~~~~~i~ID~~~~~v~f~~ 248 (258)
..-..|||..||+.+- +..|+.+++|.|..
T Consensus 289 ~~~~~C~~~i~~~~~~ilG~~fl~~~y-~vfD~~~~~igfA~ 329 (342)
T 3pvk_A 289 QPYDKCQLLFDVNDANILGDNFLRSAY-IVYDLDDNEISLAQ 329 (342)
T ss_dssp ----CEEESEEECTTCEECHHHHTTEE-EEEETTTTEEEEEE
T ss_pred CcCCeeEEEEeeCCCeEeCHHHHhcEE-EEEECCCCEEEEEe
Confidence 0124699999999999 69999999999874
No 56
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=92.56 E-value=0.34 Score=42.36 Aligned_cols=97 Identities=12% Similarity=0.131 Sum_probs=58.1
Q ss_pred EEEEEEcCCCCccccCHHHHHHcCCCcccCCCceEeecccc-cccccceEeeeeEeeeceeEEeec--------------
Q 045527 148 KVVVLTDSGASHNFISNEVVLVLKLPITNTEPYGVILRTGS-ATKAQGICRGVGLILQGVEIVEDF-------------- 212 (258)
Q Consensus 148 ~v~aLIDSGAt~sfIs~~~a~~l~l~~~~~~~~~V~~a~G~-~~~~~~~~~~v~i~i~g~~~~~~f-------------- 212 (258)
...++||||++..++...+++.+.-.+.... ....+|. .+.|....+.+.+.++|..+.+..
T Consensus 208 ~~~aiiDSGTt~~~lP~~~~~~i~~~i~~a~---~~~~~g~~~~~C~~~~P~i~f~fgg~~~~i~~~~~~~~~~~~~~~~ 284 (325)
T 1ibq_A 208 GFSAIADTGTTLILLDDEIVSAYYEQVSGAQ---ESYEAGGYVFSCSTDLPDFTVVIGDYKAVVPGKYINYAPVSTGSST 284 (325)
T ss_dssp CEEEEECTTCCSEEECHHHHHHHHTTSTTCB---CCSSSSSCEEETTCCCCCEEEEETTEEEEECHHHHEEEESSTTCSE
T ss_pred CceEEEeCCCCcEeCCHHHHHHHHHhCCCce---EcCcCCeEEEEcCCCCCcEEEEECCEEEEECHHHhcccccCCCCCe
Confidence 4689999999999999999887743321100 0001111 112221223455666665543321
Q ss_pred -c--ccCCC-CccEEecchHHHhcCCeEEEeeCCEEEEee
Q 045527 213 -L--PLDLG-ITDIIMGIHWLKTLGATHINWKTHSMKFNT 248 (258)
Q Consensus 213 -~--Vl~~~-~~dvILG~dwL~~~~~i~ID~~~~~v~f~~ 248 (258)
+ +.+.. ....|||..||+.+- +..|+.+++|-|..
T Consensus 285 C~~~i~~~~~~~~~iLG~~fl~~~y-~vfD~~~~~igfA~ 323 (325)
T 1ibq_A 285 CYGGIQSNSGLGLSILGDVFLKSQY-VVFNSEGPKLGFAA 323 (325)
T ss_dssp EEESEEECTTTCSEEECHHHHTTEE-EEEETTTTEEEEEE
T ss_pred EEEEEEcCCCCCceEEChHHhcCEE-EEEECCCCEEEeee
Confidence 1 11111 234799999999999 59999999998863
No 57
>2jys_A Protease/reverse transcriptase; retroviral protease, hydrolase; NMR {Simian foamy virus type 1}
Probab=92.52 E-value=0.3 Score=35.03 Aligned_cols=84 Identities=19% Similarity=0.224 Sum_probs=54.9
Q ss_pred EEEEECCEEEEEEEcCCCCccccCHHHHHHcCCCcccCCCceEeecccccccccceEeeeeEeeeceeEEeeccccCCCC
Q 045527 140 LASEINNKKVVVLTDSGASHNFISNEVVLVLKLPITNTEPYGVILRTGSATKAQGICRGVGLILQGVEIVEDFLPLDLGI 219 (258)
Q Consensus 140 i~~~I~g~~v~aLIDSGAt~sfIs~~~a~~l~l~~~~~~~~~V~~a~G~~~~~~~~~~~v~i~i~g~~~~~~f~Vl~~~~ 219 (258)
+.+.|.|..+.+.-||||+.++|-..|...- .+.....+....|....-.. =+++.++|+...+.+.-.+
T Consensus 10 L~vEiKg~kLkg~WDsGA~ITCiP~~fL~~E----~PI~~~~I~TIHG~k~q~vY---Yl~fKv~GRKveaEVi~sp--- 79 (107)
T 2jys_A 10 LEAEIKGTKLKAHWDSGATITCVPEAFLEDE----RPIQTMLIKTIHGEKQQDVY---YLTFKVQGRKVEAEVLASP--- 79 (107)
T ss_dssp EEEEETTEEEEEEECTTCSSEEEEGGGTTTC----CCSEEEEEECSSCEEEEEEE---EEEEEESSCEEEEEEEEES---
T ss_pred eeEEEeCcEEEEEecCCCeEEEcchHHhccc----ccccceEEEEecCceeceEE---EEEEEEcCeEEEEEEecCc---
Confidence 6788999999999999999999998885531 12223445666676443221 3578899987665544333
Q ss_pred ccEEe----cchHHHhcC
Q 045527 220 TDIIM----GIHWLKTLG 233 (258)
Q Consensus 220 ~dvIL----G~dwL~~~~ 233 (258)
+|-|| -.+|+....
T Consensus 80 ~dYvli~P~DiPW~~~~p 97 (107)
T 2jys_A 80 YDYILLNPSDVPWLMKKP 97 (107)
T ss_dssp SSSEEECTTTCHHHHSCC
T ss_pred ccEEEEcCcCccccccCc
Confidence 23222 358988743
No 58
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=92.51 E-value=1.5 Score=38.07 Aligned_cols=101 Identities=12% Similarity=0.068 Sum_probs=60.1
Q ss_pred EEECCEE------EEEEEcCCCCccccCHHHHHHcCCCcccCCCceEeeccccc-cccc--ceEeeeeEeeeceeEEee-
Q 045527 142 SEINNKK------VVVLTDSGASHNFISNEVVLVLKLPITNTEPYGVILRTGSA-TKAQ--GICRGVGLILQGVEIVED- 211 (258)
Q Consensus 142 ~~I~g~~------v~aLIDSGAt~sfIs~~~a~~l~l~~~~~~~~~V~~a~G~~-~~~~--~~~~~v~i~i~g~~~~~~- 211 (258)
+.|++.. ..++||||++..++....++.+.-..... ...+|.. +.|. ...+.+.+.++|..+.+.
T Consensus 198 i~v~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~-----~~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~ 272 (323)
T 3cms_A 198 VTISGVVVACEGGCQAILDTGTSKLVGPSSDILNIQQAIGAT-----QNQYGEFDIDCDNLSYMPTVVFEINGKMYPLTP 272 (323)
T ss_dssp EEETTEEEESTTCEEEEECTTCCSEEECHHHHHHHHHHHTCE-----EETTTEEEECTTCTTTSCCEEEEETTEEEEECH
T ss_pred EEECCEEeecCCCcEEEEecCCccEeCCHHHHHHHHHHhCCe-----ecCCCcEEEECCCCccCceEEEEECCEEEEECH
Confidence 4566654 37999999999999988777653211100 0011111 1111 112345666666555432
Q ss_pred ----------cc--ccCC-CCccEEecchHHHhcCCeEEEeeCCEEEEee
Q 045527 212 ----------FL--PLDL-GITDIIMGIHWLKTLGATHINWKTHSMKFNT 248 (258)
Q Consensus 212 ----------f~--Vl~~-~~~dvILG~dwL~~~~~i~ID~~~~~v~f~~ 248 (258)
++ +.+. .....|||..||+.+- +..|+.+++|.|..
T Consensus 273 ~~y~~~~~~~C~~~i~~~~~~~~~iLG~~fl~~~y-~vfD~~~~~igfA~ 321 (323)
T 3cms_A 273 SAYTSQDQGFCTSGFQSENHSQKWILGDVFIREYY-SVFDRANNLVGLAK 321 (323)
T ss_dssp HHHEEEETTEEEESEEEC---CCEEECHHHHTTEE-EEEETTTTEEEEEE
T ss_pred HHhccCCCCEEEEEEEeCCCCCcEEECHHHhhceE-EEEECCCCEEEEEE
Confidence 11 2222 1345899999999999 69999999998863
No 59
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=92.46 E-value=0.48 Score=41.45 Aligned_cols=97 Identities=10% Similarity=0.017 Sum_probs=57.7
Q ss_pred EEEEEEcCCCCccccCHHHHHHcCCCcccCCCceEeeccccc-ccccceEeeeeEeeeceeEEeec--------------
Q 045527 148 KVVVLTDSGASHNFISNEVVLVLKLPITNTEPYGVILRTGSA-TKAQGICRGVGLILQGVEIVEDF-------------- 212 (258)
Q Consensus 148 ~v~aLIDSGAt~sfIs~~~a~~l~l~~~~~~~~~V~~a~G~~-~~~~~~~~~v~i~i~g~~~~~~f-------------- 212 (258)
...++||||++..++...+++.+.-.+... ......|.. +.|....+.+.+.++|..+.+..
T Consensus 213 ~~~aiiDSGTt~~~lp~~~~~~i~~~i~~a---~~~~~~~~~~~~C~~~~P~i~f~f~g~~~~ip~~~~~~~~~~~~~~~ 289 (329)
T 3c9x_A 213 SIDGIADTGTTLLLLDDNVVDAYYANVQSA---QYDNQQEGVVFDCDEDLPSFSFGVGSSTITIPGDLLNLTPLEEGSST 289 (329)
T ss_dssp CEEEEECTTCCSEEECHHHHHHHHTTCTTC---EEETTTTEEEEETTCCCCCEEEEETTEEEEECGGGGEEEESSTTCSE
T ss_pred CceEEEECCCCcEeCCHHHHHHHHHhCCCc---EEcCCCCEEEEECCCCCCcEEEEECCEEEEECHHHeeeeccCCCCCe
Confidence 468999999999999999988764332110 000011111 12221223455555554443221
Q ss_pred -c--ccCCC-CccEEecchHHHhcCCeEEEeeCCEEEEee
Q 045527 213 -L--PLDLG-ITDIIMGIHWLKTLGATHINWKTHSMKFNT 248 (258)
Q Consensus 213 -~--Vl~~~-~~dvILG~dwL~~~~~i~ID~~~~~v~f~~ 248 (258)
+ +.+.. ....|||..||+.+- +..|+.+++|-|..
T Consensus 290 C~~~i~~~~~~~~~ILG~~fl~~~y-~vfD~~~~riGfA~ 328 (329)
T 3c9x_A 290 CFGGLQSSSGIGINIFGDVALKAAL-VVFDLGNERLGWAQ 328 (329)
T ss_dssp EEESEEECTTTTSEEECHHHHTTEE-EEEETTTTEEEEEE
T ss_pred EEEEEEcCCCCCcEEEChHHhccEE-EEEECCCCEEeEec
Confidence 1 11111 235899999999999 69999999998863
No 60
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=92.31 E-value=0.23 Score=44.89 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=23.3
Q ss_pred cEEecchHHHhcCCeEEEeeCCEEEE
Q 045527 221 DIIMGIHWLKTLGATHINWKTHSMKF 246 (258)
Q Consensus 221 dvILG~dwL~~~~~i~ID~~~~~v~f 246 (258)
..|||..||+.+. +..|+.+++|-|
T Consensus 358 ~~ILG~~fl~~~y-vvfD~~~~rIGf 382 (403)
T 3aup_A 358 EITLGARQLEENL-VVFDLARSRVGF 382 (403)
T ss_dssp SEEECHHHHTTSC-EEEETTTTEEEE
T ss_pred cEEEChHHhcCeE-EEEECCCCEEEE
Confidence 4799999999999 699999999999
No 61
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Probab=92.21 E-value=0.53 Score=39.11 Aligned_cols=95 Identities=17% Similarity=0.120 Sum_probs=55.4
Q ss_pred EEEEEEcCCCCccccCHHHHHHcCCCcccCCCceEeeccccc-ccccc--eEeeeeEeeeceeEEee-------------
Q 045527 148 KVVVLTDSGASHNFISNEVVLVLKLPITNTEPYGVILRTGSA-TKAQG--ICRGVGLILQGVEIVED------------- 211 (258)
Q Consensus 148 ~v~aLIDSGAt~sfIs~~~a~~l~l~~~~~~~~~V~~a~G~~-~~~~~--~~~~v~i~i~g~~~~~~------------- 211 (258)
...++||||++..++....++.+.-..... . ..+|.. +.|.. ..+.+.+.++|..+.+.
T Consensus 120 ~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~--~---~~~g~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~ 194 (241)
T 1lya_B 120 GCEAIVDTGTSLMVGPVDEVRELQKAIGAV--P---LIQGEYMIPCEKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGK 194 (241)
T ss_dssp CEEEEECTTCSSEEECHHHHHHHHHHHTCE--E---EETTEEEEEGGGGGGSCCEEEEETTEEEEECTTTSEEEETTTTS
T ss_pred CCEEEEECCCccccCCHHHHHHHHHHhCCe--e---ccCCcEEEECCCCccCCeEEEEECCEEEEECHHHhEEEccCCCC
Confidence 357999999999999998877653211100 0 011111 11110 11234555555443321
Q ss_pred --cc--ccCC-----CCccEEecchHHHhcCCeEEEeeCCEEEEee
Q 045527 212 --FL--PLDL-----GITDIIMGIHWLKTLGATHINWKTHSMKFNT 248 (258)
Q Consensus 212 --f~--Vl~~-----~~~dvILG~dwL~~~~~i~ID~~~~~v~f~~ 248 (258)
++ +.+. .....|||..||+.+- +..|+.+++|-|..
T Consensus 195 ~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y-~vfD~~~~~igfA~ 239 (241)
T 1lya_B 195 TLCLSGFMGMDIPPPSGPLWILGDVFIGRYY-TVFDRDNNRVGFAE 239 (241)
T ss_dssp SEEEESEEECCCCTTTCCCEEECHHHHTTEE-EEEETTTTEEEEEE
T ss_pred CeeEEEEEecccCCCCCCeEEechHHhcceE-EEEECCCCEEEEEE
Confidence 11 1111 1346899999999999 59999999998863
No 62
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=92.17 E-value=0.17 Score=44.59 Aligned_cols=104 Identities=13% Similarity=0.186 Sum_probs=59.0
Q ss_pred EEECCEE----EEEEEcCCCCccccCHHHHHHcCCCcccCCCceEeeccc-c-cccccceEeeeeEee-eceeEEee--c
Q 045527 142 SEINNKK----VVVLTDSGASHNFISNEVVLVLKLPITNTEPYGVILRTG-S-ATKAQGICRGVGLIL-QGVEIVED--F 212 (258)
Q Consensus 142 ~~I~g~~----v~aLIDSGAt~sfIs~~~a~~l~l~~~~~~~~~V~~a~G-~-~~~~~~~~~~v~i~i-~g~~~~~~--f 212 (258)
+.|++.. ..++||||++..++...+++.+.-..... ....-..+ . .+.|.. ...+.+.+ +|..+.+. -
T Consensus 202 i~v~g~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~--~~~~~~~~~~~~~~C~~-~p~i~f~f~~g~~~~i~~~~ 278 (342)
T 2qzx_A 202 VNVRGRNVDANTNVLLDSGTTISYFTRSIVRNILYAIGAQ--MKFDSAGNKVYVADCKT-SGTIDFQFGNNLKISVPVSE 278 (342)
T ss_dssp EEETTEEEEEEEEEEECTTCSSEEECHHHHHHHHHHHTCE--EEECTTSCEEEEECTTC-CCEEEEEETTTEEEEEEGGG
T ss_pred EEECCEecCCCcCEEEeCCCCCEEcCHHHHHHHHHHhCCe--eeeccCCCcEEEEECCC-CCcEEEEECCCcEEEEcHHH
Confidence 3455543 46899999999999998877652211110 00000001 0 111211 23455555 45544332 1
Q ss_pred cccCC----------------CCccEEecchHHHhcCCeEEEeeCCEEEEeeC
Q 045527 213 LPLDL----------------GITDIIMGIHWLKTLGATHINWKTHSMKFNTR 249 (258)
Q Consensus 213 ~Vl~~----------------~~~dvILG~dwL~~~~~i~ID~~~~~v~f~~~ 249 (258)
++++. ..-..|||..||+.+- +..|+.+++|.|...
T Consensus 279 ~~~~~~~~~~~~~~~C~~~i~~~~~~iLG~~fl~~~y-~vfD~~~~~igfA~~ 330 (342)
T 2qzx_A 279 FLFQTYYTSGKPFPKCEVRIRESEDNILGDNFLRSAY-VVYNLDDKKISMAPV 330 (342)
T ss_dssp GEECCBCTTSCBCSSEEESEEECSSCEECHHHHTTEE-EEEETTTTEEEEEEB
T ss_pred hcccccccCCCCCCccEEEEecCCCcEeChHhhhcEE-EEEECCCCEEEEEee
Confidence 22211 0124799999999999 699999999998753
No 63
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=91.81 E-value=0.22 Score=44.56 Aligned_cols=94 Identities=12% Similarity=0.109 Sum_probs=56.9
Q ss_pred EEEEEcCCCCccccCHHHHHHcCCCcccCCCceEeeccccc-ccccc--eEeeeeEeeeceeEEeec--ccc--------
Q 045527 149 VVVLTDSGASHNFISNEVVLVLKLPITNTEPYGVILRTGSA-TKAQG--ICRGVGLILQGVEIVEDF--LPL-------- 215 (258)
Q Consensus 149 v~aLIDSGAt~sfIs~~~a~~l~l~~~~~~~~~V~~a~G~~-~~~~~--~~~~v~i~i~g~~~~~~f--~Vl-------- 215 (258)
..++||||++..++...++..+.-.+... ...+|.. +.|.. ..+.+.+.++|..+.+.. +++
T Consensus 254 ~~aiiDTGTs~~~lP~~~~~~i~~~i~a~-----~~~~g~~~v~C~~~~~lP~i~f~~~g~~~~l~~~~yi~~~~~~C~~ 328 (370)
T 3psg_A 254 CQAIVDTGTSLLTGPTSAIANIQSDIGAS-----ENSDGEMVISCSSIDSLPDIVFTIDGVQYPLSPSAYILQDDDSCTS 328 (370)
T ss_dssp EEEEECTTCCSEEEEHHHHHHHHHHTTCE-----ECTTCCEECCGGGGGGCCCEEEEETTEEEEECHHHHEEECSSCEEE
T ss_pred ceEEEcCCCCcEECCHHHHHHHHHHhCCc-----ccCCCcEEEECCCcccCCcEEEEECCEEEEECHHHhcccCCCEEEE
Confidence 57999999999999988877653211100 0112211 11211 123566777776655431 111
Q ss_pred ---C--C--CCc-cEEecchHHHhcCCeEEEeeCCEEEEee
Q 045527 216 ---D--L--GIT-DIIMGIHWLKTLGATHINWKTHSMKFNT 248 (258)
Q Consensus 216 ---~--~--~~~-dvILG~dwL~~~~~i~ID~~~~~v~f~~ 248 (258)
. . ..- ..|||..||+.+- +..|+.+++|-|..
T Consensus 329 ~~~~~~~~~~~~~~~ILG~~Fl~~~y-~vfD~~~~riGfA~ 368 (370)
T 3psg_A 329 GFEGMDVPTSSGELWILGDVFIRQYY-TVFDRANNKVGLAP 368 (370)
T ss_dssp SEEEECCCTTSCCEEEECHHHHTTEE-EEEETTTTEEEEEE
T ss_pred EEEeCCCCCCCCCcEEeChHHhcceE-EEEECCCCEEEEEE
Confidence 1 1 012 3899999999999 59999999998863
No 64
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=91.78 E-value=0.61 Score=40.84 Aligned_cols=100 Identities=15% Similarity=0.115 Sum_probs=57.4
Q ss_pred EEECCEE----EEEEEcCCCCccccCHHHHHHcCCCcccCCCceEeeccc-cc--ccccceEeeeeEee-eceeEEee--
Q 045527 142 SEINNKK----VVVLTDSGASHNFISNEVVLVLKLPITNTEPYGVILRTG-SA--TKAQGICRGVGLIL-QGVEIVED-- 211 (258)
Q Consensus 142 ~~I~g~~----v~aLIDSGAt~sfIs~~~a~~l~l~~~~~~~~~V~~a~G-~~--~~~~~~~~~v~i~i-~g~~~~~~-- 211 (258)
+.|++.. ..++||||++..++....++.+.-..... .. ..+ .. +.|.. ...+.+.+ +|..+.+.
T Consensus 202 i~v~g~~~~~~~~~iiDSGTt~~~lP~~~~~~l~~~~~~~----~~-~~~~~~~~~~C~~-~p~i~f~f~~g~~~~i~~~ 275 (334)
T 1j71_A 202 INFDGTSVSTNADVVLDSGTTITYFSQSTADKFARIVGAT----WD-SRNEIYRLPSCDL-SGDAVFNFDQGVKITVPLS 275 (334)
T ss_dssp EEETTEEEEEEEEEEECTTCSSEEECHHHHHHHHHHHTCE----EE-TTTTEEECSSSCC-CSEEEEEESTTCEEEEEGG
T ss_pred EEECCEeccCCccEEEeCCCCcEecCHHHHHHHHHHcCCc----cc-CCCceEEEEcCCC-CCceEEEEcCCcEEEECHH
Confidence 4455543 46899999999999998877652211100 00 111 10 11211 13445555 34444322
Q ss_pred ccccCC-----------CCccEEecchHHHhcCCeEEEeeCCEEEEee
Q 045527 212 FLPLDL-----------GITDIIMGIHWLKTLGATHINWKTHSMKFNT 248 (258)
Q Consensus 212 f~Vl~~-----------~~~dvILG~dwL~~~~~i~ID~~~~~v~f~~ 248 (258)
-++++. ..-..|||..||+.+- +..|+.+++|.|..
T Consensus 276 ~y~~~~~~~~~C~~~i~~~~~~iLG~~fl~~~y-~vfD~~~~~igfA~ 322 (334)
T 1j71_A 276 ELILKDSDSSICYFGISRNDANILGDNFLRRAY-IVYDLDDKTISLAQ 322 (334)
T ss_dssp GGEEECSSSSCEEESEEECTTCEECHHHHTTEE-EEEETTTTEEEEEE
T ss_pred HheeecCCCCeeEEEEeECCCcEEChHhhccEE-EEEECCCCEEEEEe
Confidence 111110 0125799999999999 69999999999874
No 65
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=91.73 E-value=0.22 Score=44.18 Aligned_cols=95 Identities=11% Similarity=0.126 Sum_probs=54.1
Q ss_pred EEEE-EcCCCCccccCHHHHHHcCCCcccCCCceEeeccccc-ccccc--eE-eeeeEee--e-----ceeEEee-----
Q 045527 149 VVVL-TDSGASHNFISNEVVLVLKLPITNTEPYGVILRTGSA-TKAQG--IC-RGVGLIL--Q-----GVEIVED----- 211 (258)
Q Consensus 149 v~aL-IDSGAt~sfIs~~~a~~l~l~~~~~~~~~V~~a~G~~-~~~~~--~~-~~v~i~i--~-----g~~~~~~----- 211 (258)
..++ ||||++..++...+++.+.-..... + ...+|.. +.|.. .. +.+.+.+ + +..+.+.
T Consensus 231 ~~ai~iDSGTt~~~lP~~~~~~l~~~~~~~--~--~~~~g~~~~~C~~~~~~~p~i~f~f~~g~~~~~g~~~~i~~~~y~ 306 (361)
T 1mpp_A 231 AQAFTIDTGTNFFIAPSSFAEKVVKAALPD--A--TESQQGYTVPCSKYQDSKTTFSLVLQKSGSSSDTIDVSVPISKML 306 (361)
T ss_dssp EEEEEEETTCCSEEEEHHHHHHHHHHHCTT--C--EEETTEEEEEHHHHTTCCCEEEEEEECTTCSSCEEEEEEEGGGGE
T ss_pred CEEEEECCCCCceeCCHHHHHHHHHHhCCc--c--cCCCCcEEEECCCcccCCCcEEEEEEcCCcCCCCeEEEECHHHhE
Confidence 4689 9999999999988777652211110 0 0011111 11110 11 3344555 3 4333321
Q ss_pred ---------c--cccCCCCccEEecchHHHhcCCeEEEeeCCEEEEee
Q 045527 212 ---------F--LPLDLGITDIIMGIHWLKTLGATHINWKTHSMKFNT 248 (258)
Q Consensus 212 ---------f--~Vl~~~~~dvILG~dwL~~~~~i~ID~~~~~v~f~~ 248 (258)
+ .+.+......|||..||+.+- +..|+.+++|.|..
T Consensus 307 ~~~~~~~~~C~~~i~~~~~~~~iLG~~fl~~~y-vvfD~~~~~igfa~ 353 (361)
T 1mpp_A 307 LPVDKSGETCMFIVLPDGGNQFIVGNLFLRFFV-NVYDFGKNRIGFAP 353 (361)
T ss_dssp EECSSSSCEEEESEEEESSSCCEEEHHHHTTEE-EEEETTTTEEEEEE
T ss_pred EecCCCCCeeEEEEEeCCCCCEEEChHHhccEE-EEEECCCCEEEEEE
Confidence 1 111212235799999999999 69999999999875
No 66
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=91.39 E-value=0.29 Score=42.77 Aligned_cols=94 Identities=15% Similarity=0.121 Sum_probs=56.1
Q ss_pred EEEEEcCCCCccccCHHHHHHcCCCcccCCCceEeeccccc-ccccc--eEeeeeEeeeceeEEee-----------cc-
Q 045527 149 VVVLTDSGASHNFISNEVVLVLKLPITNTEPYGVILRTGSA-TKAQG--ICRGVGLILQGVEIVED-----------FL- 213 (258)
Q Consensus 149 v~aLIDSGAt~sfIs~~~a~~l~l~~~~~~~~~V~~a~G~~-~~~~~--~~~~v~i~i~g~~~~~~-----------f~- 213 (258)
..++||||++..++..++++.+.-..... ...+|.. +.|.. ..+.+.+.++|..+.+. ++
T Consensus 212 ~~aiiDSGTt~~~lp~~~~~~l~~~~~~~-----~~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~~g~C~~ 286 (329)
T 1htr_B 212 CQAIVDTGTSLLTVPQQYMSALLQATGAQ-----EDEYGQFLVNCNSIQNLPSLTFIINGVEFPLPPSSYILSNNGYCTV 286 (329)
T ss_dssp EEEEECTTCCSEEEEGGGHHHHHHHHTCE-----ECTTSCEEECGGGGGGSCCEEEEETTEEEEECHHHHEEECSSCEEE
T ss_pred ceEEEecCCccEECCHHHHHHHHHHhCCe-----ecCCCeEEEeCCCcccCCcEEEEECCEEEEECHHHhcccCCCEEEE
Confidence 57999999999999988777653211100 0011211 11111 12345666666555432 11
Q ss_pred -ccCC-----CCc-cEEecchHHHhcCCeEEEeeCCEEEEee
Q 045527 214 -PLDL-----GIT-DIIMGIHWLKTLGATHINWKTHSMKFNT 248 (258)
Q Consensus 214 -Vl~~-----~~~-dvILG~dwL~~~~~i~ID~~~~~v~f~~ 248 (258)
+.+. .+. ..|||..||+.+- +..|+.+++|.|..
T Consensus 287 ~~~~~~~~~~~~~~~~iLG~~fl~~~y-vvfD~~~~~igfa~ 327 (329)
T 1htr_B 287 GVEPTYLSSQNGQPLWILGDVFLRSYY-SVYDLGNNRVGFAT 327 (329)
T ss_dssp SEEEECCCCTTSSCEEEECHHHHTTEE-EEEETTTTEEEEEE
T ss_pred EEEECCCCCCCCCceEEEChHHhccEE-EEEECCCCEEEEEe
Confidence 1111 122 5899999999999 69999999998863
No 67
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=90.71 E-value=0.092 Score=39.73 Aligned_cols=17 Identities=18% Similarity=0.548 Sum_probs=9.0
Q ss_pred cceecCCCccCccccCC
Q 045527 66 LCYKCDEKFSPGHRCRK 82 (258)
Q Consensus 66 lCf~Cg~~gh~~~~Cp~ 82 (258)
.||+|++.||++.+||.
T Consensus 6 ~C~~C~~~GH~~~~Cp~ 22 (124)
T 2lli_A 6 KCNNCSQRGHLKKDCPH 22 (124)
T ss_dssp CCSSCSSSSCCTTTTTS
T ss_pred cccCCCCCCcCcccCcC
Confidence 35555555555555554
No 68
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A
Probab=90.66 E-value=0.95 Score=40.41 Aligned_cols=28 Identities=11% Similarity=0.253 Sum_probs=25.0
Q ss_pred cEEecchHHHhcCCeEEEeeCCEEEEeeC
Q 045527 221 DIIMGIHWLKTLGATHINWKTHSMKFNTR 249 (258)
Q Consensus 221 dvILG~dwL~~~~~i~ID~~~~~v~f~~~ 249 (258)
-.|||..||+.+. +..|..+++|-|...
T Consensus 345 ~~ILGd~fl~~~y-vvfD~~~~riGfA~~ 372 (381)
T 1t6e_X 345 AVILGGAQMEDFV-LDFDMEKKRLGFSRL 372 (381)
T ss_dssp SEEECHHHHTTEE-EEEETTTTEEEEEEC
T ss_pred eEEEChHHhCCcE-EEEECCCCEEEEecc
Confidence 4799999999999 699999999998753
No 69
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=90.62 E-value=0.34 Score=43.69 Aligned_cols=93 Identities=16% Similarity=0.152 Sum_probs=56.8
Q ss_pred EEEEEcCCCCccccCHHHHHHcCCCcccCCCceEeeccccc-cccc--ceEeeeeEeeeceeEEeec--ccc--------
Q 045527 149 VVVLTDSGASHNFISNEVVLVLKLPITNTEPYGVILRTGSA-TKAQ--GICRGVGLILQGVEIVEDF--LPL-------- 215 (258)
Q Consensus 149 v~aLIDSGAt~sfIs~~~a~~l~l~~~~~~~~~V~~a~G~~-~~~~--~~~~~v~i~i~g~~~~~~f--~Vl-------- 215 (258)
..++||||++..++....++.+.-.+... . .+|.. +.|. ...+.+.+.++|..+.+.. +++
T Consensus 264 ~~aiiDTGTs~~~lP~~~~~~i~~~i~a~----~--~~g~~~v~C~~~~~~P~i~f~~~g~~~~l~~~~yi~~~~~~~~~ 337 (383)
T 2x0b_A 264 CLALVDTGASYISGSTSSIEKLMEALGAK----K--RLFDYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKK 337 (383)
T ss_dssp EEEEECTTCSSEEECHHHHHHHHHHHTCE----E--CSSCEEEEGGGTTTCCCEEEEETTEEEEECHHHHBCCCCCCTTS
T ss_pred cEEEEcCCCceEEcCHHHHHHHHHHhCCc----c--cCCcEEEeccccccCceEEEEECCEEEEECHHHhEeeccCCCCC
Confidence 57999999999999988877653221100 0 12211 1121 1123566666666554321 111
Q ss_pred -------CC-----CCccEEecchHHHhcCCeEEEeeCCEEEEee
Q 045527 216 -------DL-----GITDIIMGIHWLKTLGATHINWKTHSMKFNT 248 (258)
Q Consensus 216 -------~~-----~~~dvILG~dwL~~~~~i~ID~~~~~v~f~~ 248 (258)
+. .....|||..||+.+- +..|+.+++|-|..
T Consensus 338 ~C~~~~~~~~~~~~~~~~~ILGd~Fl~~~y-~vfD~~~~rIGfA~ 381 (383)
T 2x0b_A 338 LCTLAIHAMDIPPPTGPTWALGATFIRKFY-TEFDRRNNRIGFAL 381 (383)
T ss_dssp EEEBSEEECCCCTTTCSCEEECHHHHTTEE-EEEETTTTEEEEEE
T ss_pred eEEEEEEecccCCCCCCcEEEChHHhcceE-EEEECCCCEEeEEE
Confidence 11 1235799999999999 59999999998863
No 70
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=90.08 E-value=0.12 Score=47.49 Aligned_cols=28 Identities=14% Similarity=0.238 Sum_probs=25.0
Q ss_pred ccEEecchHHHhcCCeEEEeeCCEEEEee
Q 045527 220 TDIIMGIHWLKTLGATHINWKTHSMKFNT 248 (258)
Q Consensus 220 ~dvILG~dwL~~~~~i~ID~~~~~v~f~~ 248 (258)
...|||..||+.+. +..|+.+++|-|..
T Consensus 391 ~~~ILG~~fl~~~y-vvfD~~~~rIGfA~ 418 (455)
T 3lpj_A 391 TGTVMGAVIMEGFY-VVFDRARKRIGFAV 418 (455)
T ss_dssp SCEEECHHHHTTEE-EEEETTTTEEEEEE
T ss_pred CcEEEChHHhCCeE-EEEECCCCEEEEEe
Confidence 35899999999999 69999999999874
No 71
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=89.81 E-value=0.21 Score=45.04 Aligned_cols=28 Identities=14% Similarity=0.238 Sum_probs=25.0
Q ss_pred ccEEecchHHHhcCCeEEEeeCCEEEEee
Q 045527 220 TDIIMGIHWLKTLGATHINWKTHSMKFNT 248 (258)
Q Consensus 220 ~dvILG~dwL~~~~~i~ID~~~~~v~f~~ 248 (258)
...|||..||+.+. +..|+.+++|-|..
T Consensus 345 ~~~ILG~~fl~~~y-vvfD~~~~rIGfA~ 372 (402)
T 3vf3_A 345 TGTVMGAVIMEGFY-VVFDRARKRIGFAV 372 (402)
T ss_dssp SCEEECHHHHTTEE-EEEEGGGTEEEEEE
T ss_pred CcEEEChHHhCCeE-EEEECCCCEEEEEe
Confidence 35899999999999 69999999999874
No 72
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=88.44 E-value=0.98 Score=40.19 Aligned_cols=28 Identities=7% Similarity=0.227 Sum_probs=25.2
Q ss_pred cEEecchHHHhcCCeEEEeeCCEEEEeeC
Q 045527 221 DIIMGIHWLKTLGATHINWKTHSMKFNTR 249 (258)
Q Consensus 221 dvILG~dwL~~~~~i~ID~~~~~v~f~~~ 249 (258)
..|||..||+.+. +..|+.+++|.|...
T Consensus 327 ~~ILG~~fl~~~y-vvfD~~~~rIGfA~~ 354 (383)
T 2ewy_A 327 ALVIGATVMEGFY-VIFDRAQKRVGFAAS 354 (383)
T ss_dssp CEEECHHHHTTEE-EEEETTTTEEEEEEC
T ss_pred cEEEChHHhCCee-EEEECCCCeEEEEec
Confidence 5899999999999 699999999999754
No 73
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=86.62 E-value=0.9 Score=40.71 Aligned_cols=28 Identities=14% Similarity=0.238 Sum_probs=25.0
Q ss_pred ccEEecchHHHhcCCeEEEeeCCEEEEee
Q 045527 220 TDIIMGIHWLKTLGATHINWKTHSMKFNT 248 (258)
Q Consensus 220 ~dvILG~dwL~~~~~i~ID~~~~~v~f~~ 248 (258)
...|||..||+.+. +..|+.+++|.|..
T Consensus 338 ~~~ILG~~fl~~~y-vvfD~~~~rIGfA~ 365 (395)
T 2qp8_A 338 TGTVMGAVIMEGFY-VVFDRARKRIGFAV 365 (395)
T ss_dssp SCEEECHHHHTTEE-EEEETTTTEEEEEE
T ss_pred CcEEEChHHhCCee-EEEECCCCEEEEEe
Confidence 35899999999999 69999999999875
No 74
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=84.69 E-value=3.6 Score=36.83 Aligned_cols=90 Identities=16% Similarity=0.222 Sum_probs=50.0
Q ss_pred CeEEEEEEEC--CEEEEEEEcCCCCccccCHHHH------HHcCCCcccC--C-------CceEeecccccccccceEee
Q 045527 136 KTLKLASEIN--NKKVVVLTDSGASHNFISNEVV------LVLKLPITNT--E-------PYGVILRTGSATKAQGICRG 198 (258)
Q Consensus 136 ~~i~i~~~I~--g~~v~aLIDSGAt~sfIs~~~a------~~l~l~~~~~--~-------~~~V~~a~G~~~~~~~~~~~ 198 (258)
....+.+.|+ .+++.+++||||+..++-..-+ -...-...+. + .+.+..++|. + .|....
T Consensus 61 ~~Y~~~I~IGTP~Q~f~vi~DTGSs~lWV~s~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs-~--~G~~~~ 137 (383)
T 2x0b_A 61 TQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGT-V--SGFLSQ 137 (383)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTSHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCE-E--EEEEEE
T ss_pred CEEEEEEEECCCCcEEEEEEeCCCCCeEEeccCCCCCcccccCCCCCCCCCCCcEEECCcEEEEEcCCcc-E--EEEEEe
Confidence 3567788888 6999999999999988743211 1111111111 1 2345556664 2 233333
Q ss_pred eeEeeeceeEEeeccccC--------CCCccEEecchH
Q 045527 199 VGLILQGVEIVEDFLPLD--------LGITDIIMGIHW 228 (258)
Q Consensus 199 v~i~i~g~~~~~~f~Vl~--------~~~~dvILG~dw 228 (258)
=.+.+++......|-+.. ...+|.|||+-|
T Consensus 138 Dtv~ig~~~v~~~Fg~a~~~~g~~f~~~~~dGIlGLg~ 175 (383)
T 2x0b_A 138 DIITVGGITVTQMFGEVTEMPALPFMLAEFDGVVGMGF 175 (383)
T ss_dssp EEEEETTEEEEEEEEEEEECCHHHHTTCSSSEEEECSC
T ss_pred eEEEEcCceEEEEEEEEEecCCcccccCCCceEeccCC
Confidence 355666655443332221 235799999876
No 75
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=84.46 E-value=2.4 Score=39.10 Aligned_cols=90 Identities=11% Similarity=0.194 Sum_probs=51.0
Q ss_pred CeEEEEEEEC--CEEEEEEEcCCCCccccCHHHHHHcCCC----cccC--C-------CceEeecccccccccceEeeee
Q 045527 136 KTLKLASEIN--NKKVVVLTDSGASHNFISNEVVLVLKLP----ITNT--E-------PYGVILRTGSATKAQGICRGVG 200 (258)
Q Consensus 136 ~~i~i~~~I~--g~~v~aLIDSGAt~sfIs~~~a~~l~l~----~~~~--~-------~~~V~~a~G~~~~~~~~~~~v~ 200 (258)
....+.+.|+ .+++.+++||||+..+|-..-+....+. ..+. + .+.+..++|. + .|....=.
T Consensus 138 ~~Y~~~I~IGTP~Q~~~vi~DTGSs~lWV~~~~C~~~~C~~~~~ydps~SsT~~~~~~~~~i~YgdGs-~--~G~~~~Dt 214 (453)
T 2bju_A 138 IMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGT-V--SGFFSKDL 214 (453)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSTTGGGSCCBCGGGCTTCEEEEEEEEEECSSSE-E--EEEEEEEE
T ss_pred CEEEEEEEECCCCeEEEEEEECCCcceEEeccCCCccccCCCCcCCCccCCceeECCcEEEEEcCCCC-e--EEEEEEEE
Confidence 4577888898 8999999999999998754321100110 1111 1 2344556665 2 23333335
Q ss_pred EeeeceeEEeeccccCC----------CCccEEecchH
Q 045527 201 LILQGVEIVEDFLPLDL----------GITDIIMGIHW 228 (258)
Q Consensus 201 i~i~g~~~~~~f~Vl~~----------~~~dvILG~dw 228 (258)
+.+++......|-+... ...|.|||+.+
T Consensus 215 v~ig~~~v~~~Fg~a~~~~~~g~~f~~~~~dGIlGLg~ 252 (453)
T 2bju_A 215 VTVGNLSLPYKFIEVIDTNGFEPTYTASTFDGILGLGW 252 (453)
T ss_dssp EEETTEEEEEEEEEEEECGGGTTHHHHSSCCEEEECSC
T ss_pred EEEeCcEEEEEEEEEEEecccCccccccCCceeEeccC
Confidence 66666554433333221 24799999876
No 76
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=82.67 E-value=1 Score=41.47 Aligned_cols=89 Identities=12% Similarity=0.208 Sum_probs=50.5
Q ss_pred eEEEEEEEC--CEEEEEEEcCCCCccccCHHHHH--HcC--CCcccC---------CCceEeecccccccccceEeeeeE
Q 045527 137 TLKLASEIN--NKKVVVLTDSGASHNFISNEVVL--VLK--LPITNT---------EPYGVILRTGSATKAQGICRGVGL 201 (258)
Q Consensus 137 ~i~i~~~I~--g~~v~aLIDSGAt~sfIs~~~a~--~l~--l~~~~~---------~~~~V~~a~G~~~~~~~~~~~v~i 201 (258)
...+.+.|+ .+++.+++||||+..+|-..-+. ... -.-.+. ..+.+..++|. +.|....=.+
T Consensus 138 ~Y~~~I~IGTPpQ~~~vi~DTGSs~lWV~s~~C~s~~C~~~~~ydps~SsT~~~~~~~f~i~YgdGs---~~G~~~~Dtv 214 (451)
T 3qvc_A 138 LSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCTSESCESKNHYDSSKSKTYEKDDTPVKLTSKAGT---ISGIFSKDLV 214 (451)
T ss_dssp EEEEEEEETTTTEEEEEEEESSBCSEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEEEEEEEECSSEE---EEEEEEEEEE
T ss_pred EEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCccccCCCCCCCCCCCcccccCCCEEEEEECCCE---EEEEEEEEEE
Confidence 367788888 79999999999999888643221 000 001110 12344455565 2333323356
Q ss_pred eeeceeEEeeccccCC----------CCccEEecchH
Q 045527 202 ILQGVEIVEDFLPLDL----------GITDIIMGIHW 228 (258)
Q Consensus 202 ~i~g~~~~~~f~Vl~~----------~~~dvILG~dw 228 (258)
.+++......|-+... ...|.|||+.+
T Consensus 215 ~igg~~v~~~Fg~a~~t~~~~~~f~~~~~dGILGLg~ 251 (451)
T 3qvc_A 215 TIGKLSVPYKFIEMTEIVGFEPFYSESDVDGVFGLGW 251 (451)
T ss_dssp EETTEEEEEEEEEEEEEEECTTHHHHSCCCEEEECSS
T ss_pred EECCEEEEEEEEEEEeccccCCCccCCCCCEEEecCC
Confidence 6677665544433322 34699999965
No 77
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=81.48 E-value=1.8 Score=31.02 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=23.2
Q ss_pred eEEEEEEEC--CEEEEEEEcCCCCccccCH
Q 045527 137 TLKLASEIN--NKKVVVLTDSGASHNFISN 164 (258)
Q Consensus 137 ~i~i~~~I~--g~~v~aLIDSGAt~sfIs~ 164 (258)
...+.+.|+ .+++.++|||||+..+|-.
T Consensus 14 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~ 43 (97)
T 1lya_A 14 QYYGEIGIGTPPQCFTVVFDTGSSNLWVPS 43 (97)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred eEEEEEEECCCCeEEEEEEeCCCCceEEeE
Confidence 456778888 7999999999999988753
No 78
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=81.43 E-value=1.5 Score=39.77 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=23.8
Q ss_pred EEecchHHHhcCCeEEEeeCCEEEEee
Q 045527 222 IIMGIHWLKTLGATHINWKTHSMKFNT 248 (258)
Q Consensus 222 vILG~dwL~~~~~i~ID~~~~~v~f~~ 248 (258)
.|||..||+.+. +..|..+++|-|..
T Consensus 372 ~IlGd~fl~~~~-vvfD~~~~riGfa~ 397 (413)
T 3vla_A 372 IVIGGHQLEDNL-VQFDLATSRVGFSG 397 (413)
T ss_dssp EEECHHHHTTEE-EEEETTTTEEEEEE
T ss_pred eeEehhhhcCeE-EEEECCCCEEEEEE
Confidence 699999999999 69999999999874
No 79
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=80.82 E-value=1.7 Score=37.89 Aligned_cols=88 Identities=16% Similarity=0.189 Sum_probs=48.5
Q ss_pred eEEEEEEEC--CEEEEEEEcCCCCccccCHHHHHHcCCCcc--c-CCCceEeecccccccccceEeeeeEeeeceeEE-e
Q 045527 137 TLKLASEIN--NKKVVVLTDSGASHNFISNEVVLVLKLPIT--N-TEPYGVILRTGSATKAQGICRGVGLILQGVEIV-E 210 (258)
Q Consensus 137 ~i~i~~~I~--g~~v~aLIDSGAt~sfIs~~~a~~l~l~~~--~-~~~~~V~~a~G~~~~~~~~~~~v~i~i~g~~~~-~ 210 (258)
...+.+.|+ .+++.++|||||+..+|... ..+.-... . ...+.+..++|. + .+....=.|.+++.... .
T Consensus 13 ~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~--~~y~~s~Ss~~~~~~~~i~Yg~Gs-~--~G~~~~Dtv~~g~~~v~~~ 87 (340)
T 1wkr_A 13 DYVVNVGVGSPATTYSLLVDTGSSNTWLGAD--KSYVKTSTSSATSDKVSVTYGSGS-F--SGTEYTDTVTLGSLTIPKQ 87 (340)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCCEECSS--SCCCCCTTCEEEEEEEEEECSSCE-E--EEEEEEEEEEETTEEEEEE
T ss_pred EEEEEEEECCCCcEEEEEEeCCChhheecCC--CccCCcCCccccCceEEEEECCcE-E--EEEEEEEEEEECCEEEcce
Confidence 466788888 79999999999999988542 11111000 0 012445556665 2 23333334555554332 2
Q ss_pred eccccC----CCCccEEecchHH
Q 045527 211 DFLPLD----LGITDIIMGIHWL 229 (258)
Q Consensus 211 ~f~Vl~----~~~~dvILG~dwL 229 (258)
.|-+.. ....|.|||+-+-
T Consensus 88 ~fg~~~~~~~~~~~~GilGLg~~ 110 (340)
T 1wkr_A 88 SIGVASRDSGFDGVDGILGVGPV 110 (340)
T ss_dssp EEEEEEEEESCTTCSEEEECSCG
T ss_pred EEEEEEccCCCcCCCcEEECCcc
Confidence 222211 2357999998763
No 80
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=79.56 E-value=7.6 Score=33.58 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=23.4
Q ss_pred CeEEEEEEEC--CEEEEEEEcCCCCccccC
Q 045527 136 KTLKLASEIN--NKKVVVLTDSGASHNFIS 163 (258)
Q Consensus 136 ~~i~i~~~I~--g~~v~aLIDSGAt~sfIs 163 (258)
....+.+.|+ .+++.++|||||+..+|-
T Consensus 18 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~ 47 (341)
T 3k1w_A 18 TQYYGEIGIGTPPQTFKVVFDTGSSNVWVP 47 (341)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEE
T ss_pred CEEEEEEEEcCCCcEEEEEEeCCCcceEEc
Confidence 3467788888 599999999999998884
No 81
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=79.14 E-value=6.9 Score=33.76 Aligned_cols=29 Identities=17% Similarity=0.222 Sum_probs=23.5
Q ss_pred CeEEEEEEEC--CEEEEEEEcCCCCccccCH
Q 045527 136 KTLKLASEIN--NKKVVVLTDSGASHNFISN 164 (258)
Q Consensus 136 ~~i~i~~~I~--g~~v~aLIDSGAt~sfIs~ 164 (258)
....+.+.|+ .+.+.+++||||+..+|..
T Consensus 14 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~ 44 (323)
T 3cms_A 14 SQYFGKIYLGTPPQEFTVLFDTGSSDFWVPS 44 (323)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred CEEEEEEEECCCCeEEEEEEeCCccceEEcC
Confidence 3456778887 6899999999999988753
No 82
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=77.77 E-value=2.3 Score=37.93 Aligned_cols=28 Identities=14% Similarity=0.401 Sum_probs=22.2
Q ss_pred eEEEEEEEC--CEEEEEEEcCCCCccccCH
Q 045527 137 TLKLASEIN--NKKVVVLTDSGASHNFISN 164 (258)
Q Consensus 137 ~i~i~~~I~--g~~v~aLIDSGAt~sfIs~ 164 (258)
...+.+.|+ .+.+.+++||||+..+|-.
T Consensus 63 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~ 92 (375)
T 1miq_A 63 MFYGEGEVGDNHQKFMLIFDTGSANLWVPS 92 (375)
T ss_dssp EEECCCEETTTTEECCEEEETTCCCEEEEB
T ss_pred EEEEEEEECCCCeEEEEEEeCCCcceEEcc
Confidence 345567777 7899999999999988754
No 83
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=77.14 E-value=9.5 Score=33.73 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=22.6
Q ss_pred eEEEEEEEC--CEEEEEEEcCCCCccccCH
Q 045527 137 TLKLASEIN--NKKVVVLTDSGASHNFISN 164 (258)
Q Consensus 137 ~i~i~~~I~--g~~v~aLIDSGAt~sfIs~ 164 (258)
...+.+.|+ .+++.+++||||+..++-.
T Consensus 57 ~Y~~~i~iGTPpQ~~~v~~DTGSs~lWV~s 86 (370)
T 3psg_A 57 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPS 86 (370)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred EEEEEEEEcCCCCEEEEEEeCCCCccEEEC
Confidence 356677787 4899999999999888854
No 84
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=76.49 E-value=4.4 Score=37.48 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=24.0
Q ss_pred cEEecchHHHhcCCeEEEeeCCEEEEee
Q 045527 221 DIIMGIHWLKTLGATHINWKTHSMKFNT 248 (258)
Q Consensus 221 dvILG~dwL~~~~~i~ID~~~~~v~f~~ 248 (258)
..|||..||+.+. +..|+.+.+|-|..
T Consensus 450 ~~ILGd~fl~~~y-~vfD~~~~rIGfA~ 476 (478)
T 1qdm_A 450 LWILGDVFMGPYH-TVFDYGKLRIGFAK 476 (478)
T ss_dssp EEEECHHHHTTEE-EEEETTTTEEEEEE
T ss_pred cEEECHHHhccEE-EEEECCCCEEEEEe
Confidence 4799999999999 59999999998863
No 85
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=76.19 E-value=4.3 Score=35.55 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=21.4
Q ss_pred EEEEEEEC--CEEEEEEEcCCCCccccCH
Q 045527 138 LKLASEIN--NKKVVVLTDSGASHNFISN 164 (258)
Q Consensus 138 i~i~~~I~--g~~v~aLIDSGAt~sfIs~ 164 (258)
..+.+.|+ .+++.+++||||+..+|-.
T Consensus 25 Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~ 53 (351)
T 1tzs_A 25 YFGTISIGSPPQNFTVIFDTGSSNLWVPS 53 (351)
T ss_dssp CCEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred EEEEEEECCCCeEEEEEEeCCCcceEEec
Confidence 34566776 5899999999999998854
No 86
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=58.68 E-value=9 Score=33.02 Aligned_cols=29 Identities=10% Similarity=0.178 Sum_probs=24.3
Q ss_pred CeEEEEEEECCEEEEEEEcCCCCccccCH
Q 045527 136 KTLKLASEINNKKVVVLTDSGASHNFISN 164 (258)
Q Consensus 136 ~~i~i~~~I~g~~v~aLIDSGAt~sfIs~ 164 (258)
....+.+.|+.+++.+++||||+..+|-.
T Consensus 15 ~~Y~~~i~iG~Q~~~v~~DTGSs~lWv~~ 43 (323)
T 1bxo_A 15 EEYITPVTIGGTTLNLNFDTGSADLWVFS 43 (323)
T ss_dssp SCEEEEEEETTEEEEEEEETTCCCEEECB
T ss_pred CEEEEEEEECCEEEEEEEeCCCcceEEec
Confidence 34567888889999999999999988754
No 87
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=58.24 E-value=9.3 Score=32.98 Aligned_cols=28 Identities=7% Similarity=0.154 Sum_probs=24.0
Q ss_pred eEEEEEEECCEEEEEEEcCCCCccccCH
Q 045527 137 TLKLASEINNKKVVVLTDSGASHNFISN 164 (258)
Q Consensus 137 ~i~i~~~I~g~~v~aLIDSGAt~sfIs~ 164 (258)
...+.+.|+.+++.++|||||+..+|-.
T Consensus 16 ~Y~~~i~iG~q~~~v~~DTGSs~lWv~~ 43 (323)
T 1izd_A 16 EYITQVTVGDDTLGLDFDTGSADLWVFS 43 (323)
T ss_dssp CEEEEEEETTEEEEEEEETTCCCEEECB
T ss_pred EEEEEEEECCEEEEEEEcCCCcceEEec
Confidence 4567888889999999999999998854
No 88
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=56.49 E-value=11 Score=31.04 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=23.4
Q ss_pred CeEEEEEEEC--CEEEEEEEcCCCCccccC
Q 045527 136 KTLKLASEIN--NKKVVVLTDSGASHNFIS 163 (258)
Q Consensus 136 ~~i~i~~~I~--g~~v~aLIDSGAt~sfIs 163 (258)
....+.+.|+ .+++.++|||||+..+|-
T Consensus 13 ~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~ 42 (239)
T 1b5f_A 13 TSYFGEIGIGTPPQKFTVIFDTGSSVLWVP 42 (239)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEE
T ss_pred CEEEEEEEECCCCeEEEEEEeCCCcceEEE
Confidence 3466778888 799999999999999874
No 89
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=56.33 E-value=9.5 Score=33.01 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=22.7
Q ss_pred EEEEEEECCEEEEEEEcCCCCccccCH
Q 045527 138 LKLASEINNKKVVVLTDSGASHNFISN 164 (258)
Q Consensus 138 i~i~~~I~g~~v~aLIDSGAt~sfIs~ 164 (258)
..+.+.|+.+++.+++||||+..+|-.
T Consensus 19 Y~~~i~iG~Q~~~v~~DTGSs~lWv~~ 45 (330)
T 1yg9_A 19 YAGITKIGNQNFLTVFDSTSCNVVVAS 45 (330)
T ss_dssp SEEEEEETTEEEEEEEETTCCCEEEEC
T ss_pred EEEEEEECCEEEEEEEeCCCcceEEec
Confidence 456778889999999999999988753
No 90
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=56.23 E-value=9.7 Score=32.86 Aligned_cols=29 Identities=7% Similarity=0.163 Sum_probs=24.0
Q ss_pred CeEEEEEEECCEEEEEEEcCCCCccccCH
Q 045527 136 KTLKLASEINNKKVVVLTDSGASHNFISN 164 (258)
Q Consensus 136 ~~i~i~~~I~g~~v~aLIDSGAt~sfIs~ 164 (258)
....+.+.|+.+++.+++||||+..+|-.
T Consensus 14 ~~Y~~~i~iG~Q~~~v~~DTGSs~lWv~~ 42 (325)
T 1ibq_A 14 EEYLTPVTVGKSTLHLDFDTGSADLWVFS 42 (325)
T ss_dssp SCEEEEEEEBTEEEEEEEETTCCCEEEEC
T ss_pred CEEEEEEEECCEEEEEEEeCCCccceEee
Confidence 34567788889999999999999988754
No 91
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=54.18 E-value=12 Score=32.22 Aligned_cols=29 Identities=24% Similarity=0.206 Sum_probs=24.3
Q ss_pred CeEEEEEEEC--CEEEEEEEcCCCCccccCH
Q 045527 136 KTLKLASEIN--NKKVVVLTDSGASHNFISN 164 (258)
Q Consensus 136 ~~i~i~~~I~--g~~v~aLIDSGAt~sfIs~ 164 (258)
....+.+.|+ .+++.+++||||+..+|-.
T Consensus 15 ~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~ 45 (325)
T 2apr_A 15 IEYYGQVTIGTPGKKFNLDFDTGSSDLWIAS 45 (325)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCCEEEB
T ss_pred CEEEEEEEECCCCeEEEEEEcCCCCCEEEcc
Confidence 4466788888 8999999999999988754
No 92
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A
Probab=52.70 E-value=55 Score=28.67 Aligned_cols=24 Identities=4% Similarity=0.037 Sum_probs=17.9
Q ss_pred eEEEEEEECCEEEEEEEcCCCCccccC
Q 045527 137 TLKLASEINNKKVVVLTDSGASHNFIS 163 (258)
Q Consensus 137 ~i~i~~~I~g~~v~aLIDSGAt~sfIs 163 (258)
...+.+.|+. | ++|||||+..++-
T Consensus 15 ~Y~~~i~iGt-P--v~~DTGSs~lWv~ 38 (381)
T 1t6e_X 15 LYTIPFHDGA-S--LVLDVAGPLVWST 38 (381)
T ss_dssp CEEEEEETTE-E--EEEETTCCCEEEC
T ss_pred EEEEEEeCCC-E--EEEECCCCceEEe
Confidence 4556666654 4 8999999988875
No 93
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=50.66 E-value=15 Score=31.76 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=23.4
Q ss_pred eEEEEEEEC--CEEEEEEEcCCCCccccCH
Q 045527 137 TLKLASEIN--NKKVVVLTDSGASHNFISN 164 (258)
Q Consensus 137 ~i~i~~~I~--g~~v~aLIDSGAt~sfIs~ 164 (258)
...+.+.|+ .+++.++|||||+..+|-.
T Consensus 16 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~ 45 (329)
T 1oew_A 16 AYITPVQIGTPAQTLNLDFDTGSSDLWVFS 45 (329)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCEEECB
T ss_pred EEEEEEEECCCCeEEEEEECCCCCCeEEec
Confidence 456677888 7999999999999998864
No 94
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=50.13 E-value=15 Score=31.67 Aligned_cols=28 Identities=14% Similarity=0.176 Sum_probs=23.3
Q ss_pred eEEEEEEEC--CEEEEEEEcCCCCccccCH
Q 045527 137 TLKLASEIN--NKKVVVLTDSGASHNFISN 164 (258)
Q Consensus 137 ~i~i~~~I~--g~~v~aLIDSGAt~sfIs~ 164 (258)
...+.+.|+ .+++.++|||||+..+|-.
T Consensus 16 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~ 45 (329)
T 3c9x_A 16 EYITSVSIGTPAQVLPLDFDTGSSDLWVFS 45 (329)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCEEECB
T ss_pred EEEEEEEECCCCeEEEEEEcCCCCCeEEec
Confidence 356677888 7999999999999998854
No 95
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=49.76 E-value=15 Score=31.99 Aligned_cols=30 Identities=17% Similarity=0.433 Sum_probs=24.8
Q ss_pred CeEEEEEEEC--CEEEEEEEcCCCCccccCHH
Q 045527 136 KTLKLASEIN--NKKVVVLTDSGASHNFISNE 165 (258)
Q Consensus 136 ~~i~i~~~I~--g~~v~aLIDSGAt~sfIs~~ 165 (258)
....+.+.|+ .+.+.++|||||+..+|-..
T Consensus 18 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~ 49 (361)
T 1mpp_A 18 EEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHK 49 (361)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCCEEEBT
T ss_pred CEEEEEEEECCCCcEEEEEEcCCCCCeEECCC
Confidence 4567788888 79999999999999987543
No 96
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=49.68 E-value=15 Score=31.73 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=23.0
Q ss_pred eEEEEEEEC--CEEEEEEEcCCCCccccC
Q 045527 137 TLKLASEIN--NKKVVVLTDSGASHNFIS 163 (258)
Q Consensus 137 ~i~i~~~I~--g~~v~aLIDSGAt~sfIs 163 (258)
...+.+.|+ .+++.++|||||+..+|-
T Consensus 13 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~ 41 (342)
T 2qzx_A 13 TYTADITVGSDNQKLNVIVDTGSSDLWIP 41 (342)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCEEEE
T ss_pred EEEEEEEECCCCcEEEEEEeCCCCCeEEe
Confidence 456778888 799999999999999884
No 97
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=49.55 E-value=14 Score=30.37 Aligned_cols=29 Identities=24% Similarity=0.218 Sum_probs=23.2
Q ss_pred EEECCEE-------EEEEEcCCCCccccCHHHHHHc
Q 045527 142 SEINNKK-------VVVLTDSGASHNFISNEVVLVL 170 (258)
Q Consensus 142 ~~I~g~~-------v~aLIDSGAt~sfIs~~~a~~l 170 (258)
+.|++.. ..++||||++..++...+++.+
T Consensus 197 i~v~~~~~~~~~~~~~aiiDTGTt~~~lP~~~~~~i 232 (239)
T 1b5f_A 197 VLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQI 232 (239)
T ss_dssp EEETTEECCTTTTCEEEEECTTCSSEEECHHHHHHH
T ss_pred EEECCEEecccCCCCEEEEecCcchhhCCHHHHHHH
Confidence 4566654 4799999999999999888765
No 98
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=48.87 E-value=16 Score=31.51 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=23.0
Q ss_pred eEEEEEEEC--CEEEEEEEcCCCCccccC
Q 045527 137 TLKLASEIN--NKKVVVLTDSGASHNFIS 163 (258)
Q Consensus 137 ~i~i~~~I~--g~~v~aLIDSGAt~sfIs 163 (258)
...+.+.|+ .+++.+++||||+..+|-
T Consensus 13 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~ 41 (334)
T 1j71_A 13 SYAADIVVGSNQQKQTVVIDTGSSDLWVV 41 (334)
T ss_dssp SEEEEEEETTTTEEEEEEEETTCCCEEEE
T ss_pred EEEEEEEEcCCCcEEEEEEcCCCCCEEEe
Confidence 456778888 799999999999999884
No 99
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=48.56 E-value=11 Score=25.72 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=24.3
Q ss_pred ccEEecchHHHhcCCeEEEeeCCEEEEee
Q 045527 220 TDIIMGIHWLKTLGATHINWKTHSMKFNT 248 (258)
Q Consensus 220 ~dvILG~dwL~~~~~i~ID~~~~~v~f~~ 248 (258)
...|||..||+.+- +..|+.+.+|-|..
T Consensus 58 ~~~ILGd~Fl~~~y-~vfD~~~~riGfA~ 85 (87)
T 1b5f_B 58 PLWILGDVFMRPYH-TVFDYGNLLVGFAE 85 (87)
T ss_dssp BEEEECHHHHTTEE-EEEETTTTEEEEEE
T ss_pred CeEEechHHhccEE-EEEECCCCEEEEEE
Confidence 35799999999999 59999999998863
No 100
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=48.54 E-value=16 Score=31.33 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=22.8
Q ss_pred eEEEEEEEC--CEEEEEEEcCCCCccccC
Q 045527 137 TLKLASEIN--NKKVVVLTDSGASHNFIS 163 (258)
Q Consensus 137 ~i~i~~~I~--g~~v~aLIDSGAt~sfIs 163 (258)
...+.+.|+ .+++.+++||||+..+|-
T Consensus 14 ~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~ 42 (329)
T 1dpj_A 14 QYYTDITLGTPPQNFKVILDTGSSNLWVP 42 (329)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEE
T ss_pred EEEEEEEECCCCcEEEEEEeCCCcCeEEe
Confidence 456778887 699999999999998874
No 101
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=47.21 E-value=18 Score=31.19 Aligned_cols=92 Identities=15% Similarity=0.297 Sum_probs=49.8
Q ss_pred eEEEEEEEC--CEEEEEEEcCCCCccccCHH---HHHHcCCC----cccC---------CCceEeecccccccccceEee
Q 045527 137 TLKLASEIN--NKKVVVLTDSGASHNFISNE---VVLVLKLP----ITNT---------EPYGVILRTGSATKAQGICRG 198 (258)
Q Consensus 137 ~i~i~~~I~--g~~v~aLIDSGAt~sfIs~~---~a~~l~l~----~~~~---------~~~~V~~a~G~~~~~~~~~~~ 198 (258)
...+.+.|+ .+++.+++||||+..+|-.. +.....+. ..+. ..+.+..++|.... |....
T Consensus 13 ~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~~~--G~~~~ 90 (339)
T 3fv3_A 13 SYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCKSSGTFTPSSSSSYKNLGAAFTIRYGDGSTSQ--GTWGK 90 (339)
T ss_dssp SEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECTTCCTTTTCCBCGGGCTTCEEEEEEEEEECTTSCEEE--EEEEE
T ss_pred EEEEEEEEcCCCcEEEEEEeCCCCceEEecCCCCCCCCCCCCCCCcCCCccCcceeeCCceEEEEECCCceEE--EEEEE
Confidence 456778888 69999999999999988532 11100110 0010 12334455564332 32223
Q ss_pred eeEeeeceeEE-eeccccC-CCCccEEecchHHH
Q 045527 199 VGLILQGVEIV-EDFLPLD-LGITDIIMGIHWLK 230 (258)
Q Consensus 199 v~i~i~g~~~~-~~f~Vl~-~~~~dvILG~dwL~ 230 (258)
=.+.+++.... ..|-+.. ....|.|||+-+-.
T Consensus 91 D~v~~g~~~v~~~~fg~~~~~~~~~GilGLg~~~ 124 (339)
T 3fv3_A 91 DTVTINGVSITGQQIADVTQTSVDQGILGIGYTS 124 (339)
T ss_dssp EEEEETTEEEEEEEEEEEEEESSSSCEEECSCGG
T ss_pred EEEEECCEEECceEEEEEEecCCCceeEEecCcc
Confidence 35666665543 3333332 23568999987643
No 102
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=47.17 E-value=17 Score=32.13 Aligned_cols=28 Identities=14% Similarity=0.277 Sum_probs=23.8
Q ss_pred eEEEEEEEC--CEEEEEEEcCCCCccccCH
Q 045527 137 TLKLASEIN--NKKVVVLTDSGASHNFISN 164 (258)
Q Consensus 137 ~i~i~~~I~--g~~v~aLIDSGAt~sfIs~ 164 (258)
...+.+.|+ .+++.++|||||+..+|-.
T Consensus 22 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~ 51 (395)
T 2qp8_A 22 GYYVEMTVGSPPQTLNILVDTGSSNFAVGA 51 (395)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEC
T ss_pred eEEEEEEecCCCceEEEEEecCCCceEEEC
Confidence 466788888 7999999999999998853
No 103
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=45.05 E-value=20 Score=31.54 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=23.2
Q ss_pred eEEEEEEEC--CEEEEEEEcCCCCccccCH
Q 045527 137 TLKLASEIN--NKKVVVLTDSGASHNFISN 164 (258)
Q Consensus 137 ~i~i~~~I~--g~~v~aLIDSGAt~sfIs~ 164 (258)
...+.+.|+ .+++.++|||||+..+|-.
T Consensus 14 ~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~ 43 (383)
T 2ewy_A 14 GYYLEMLIGTPPQKLQILVDTGSSNFAVAG 43 (383)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEC
T ss_pred cEEEEEEecCCCceEEEEEecCCCceEEec
Confidence 456778887 7999999999999988743
No 104
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=44.86 E-value=4.3 Score=27.93 Aligned_cols=16 Identities=25% Similarity=0.901 Sum_probs=14.1
Q ss_pred CcceecCCCccCccccC
Q 045527 65 GLCYKCDEKFSPGHRCR 81 (258)
Q Consensus 65 ~lCf~Cg~~gh~~~~Cp 81 (258)
.-||.|++.||. ..|.
T Consensus 59 ~FC~~C~~~wH~-~~C~ 74 (80)
T 2jmo_A 59 AFCRECKEAYHE-GECS 74 (80)
T ss_dssp CEETTTTEECCS-SCSS
T ss_pred eeccccCccccC-Cccc
Confidence 359999999999 9996
No 105
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=44.72 E-value=20 Score=30.79 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=22.7
Q ss_pred eEEEEEEEC--CEEEEEEEcCCCCccccC
Q 045527 137 TLKLASEIN--NKKVVVLTDSGASHNFIS 163 (258)
Q Consensus 137 ~i~i~~~I~--g~~v~aLIDSGAt~sfIs 163 (258)
...+.+.|+ .+++.+++||||+..+|-
T Consensus 13 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~ 41 (342)
T 3pvk_A 13 TYAADITVGSNNQKLNVIVDTGSSDLWVP 41 (342)
T ss_dssp SEEEEEEETTTTEEEEEEEETTCCCEEEE
T ss_pred EEEEEEEEcCCCcEEEEEEECCCcceEEE
Confidence 356777887 699999999999999883
No 106
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=44.48 E-value=19 Score=30.68 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=21.7
Q ss_pred EEEEEEEC--CEEEEEEEcCCCCccccCH
Q 045527 138 LKLASEIN--NKKVVVLTDSGASHNFISN 164 (258)
Q Consensus 138 i~i~~~I~--g~~v~aLIDSGAt~sfIs~ 164 (258)
..+.+.|+ .+.+.+++||||+..+|..
T Consensus 13 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~ 41 (320)
T 4aa9_A 13 YFGKIYIGTPPQEFTVVFDTGSSDLWVPS 41 (320)
T ss_dssp CEEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred EEEEEEECCCCeEEEEEEeCCCCceEEcC
Confidence 45566777 5899999999999988854
No 107
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=44.04 E-value=21 Score=30.60 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=22.2
Q ss_pred eEEEEEEEC--CEEEEEEEcCCCCccccCH
Q 045527 137 TLKLASEIN--NKKVVVLTDSGASHNFISN 164 (258)
Q Consensus 137 ~i~i~~~I~--g~~v~aLIDSGAt~sfIs~ 164 (258)
...+.+.|+ .+++.+++||||+..+|-.
T Consensus 13 ~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~ 42 (329)
T 1htr_B 13 AYFGEISIGTPPQNFLVLFDTGSSNLWVPS 42 (329)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred EEEEEEEECCCCcEEEEEEcCCCccEEEec
Confidence 345667777 5899999999999988753
No 108
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=43.40 E-value=22 Score=31.66 Aligned_cols=28 Identities=18% Similarity=0.116 Sum_probs=23.5
Q ss_pred CeEEEEEEEC--CEEEEEEEcCCCCccccC
Q 045527 136 KTLKLASEIN--NKKVVVLTDSGASHNFIS 163 (258)
Q Consensus 136 ~~i~i~~~I~--g~~v~aLIDSGAt~sfIs 163 (258)
....+.+.|+ .+++.++|||||+..+|-
T Consensus 21 ~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~ 50 (403)
T 3aup_A 21 GLHWANLQKRTPLMQVPVLVDLNGNHLWVN 50 (403)
T ss_dssp CCEEEEEEETTTTEEEEEEEETTCSSEEEE
T ss_pred ceEEEEEECCCCCceeEEEEECCCCceeEC
Confidence 4467788888 789999999999998874
No 109
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=43.35 E-value=22 Score=30.41 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=22.9
Q ss_pred eEEEEEEEC--CEEEEEEEcCCCCccccCH
Q 045527 137 TLKLASEIN--NKKVVVLTDSGASHNFISN 164 (258)
Q Consensus 137 ~i~i~~~I~--g~~v~aLIDSGAt~sfIs~ 164 (258)
...+.+.|+ .+++.+++||||+..+|-.
T Consensus 13 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~ 42 (324)
T 1am5_A 13 EYYGVISIGTPPESFKVIFDTGSSNLWVSS 42 (324)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEECB
T ss_pred EEEEEEEECCCCeEEEEEEeCCCcceEEec
Confidence 456677887 5899999999999988854
No 110
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=43.32 E-value=21 Score=31.55 Aligned_cols=29 Identities=14% Similarity=0.284 Sum_probs=24.3
Q ss_pred CeEEEEEEEC--CEEEEEEEcCCCCccccCH
Q 045527 136 KTLKLASEIN--NKKVVVLTDSGASHNFISN 164 (258)
Q Consensus 136 ~~i~i~~~I~--g~~v~aLIDSGAt~sfIs~ 164 (258)
....+.+.|+ .+++.++|||||+..+|-.
T Consensus 28 ~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~ 58 (402)
T 3vf3_A 28 QGYYVEMTVGSPPQTLNILVDTGSSNFAVGA 58 (402)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEEC
T ss_pred CEEEEEEEECCCCeEEEEEEeCCCCceEEcc
Confidence 3567788888 7999999999999988843
No 111
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=39.45 E-value=7.6 Score=26.97 Aligned_cols=18 Identities=22% Similarity=0.922 Sum_probs=15.7
Q ss_pred CcceecCCCc---cCccccCC
Q 045527 65 GLCYKCDEKF---SPGHRCRK 82 (258)
Q Consensus 65 ~lCf~Cg~~g---h~~~~Cp~ 82 (258)
..||.|+.+| |....|..
T Consensus 52 ~FC~~C~~~w~~~H~~~sC~~ 72 (86)
T 2ct7_A 52 TFCVRCKRQWEEQHRGRSCED 72 (86)
T ss_dssp EECSSSCSBCCTTTTTSCHHH
T ss_pred ccccccCCchhhcCCCCChHH
Confidence 4599999999 99999973
No 112
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=38.98 E-value=27 Score=31.61 Aligned_cols=28 Identities=14% Similarity=0.277 Sum_probs=23.9
Q ss_pred eEEEEEEEC--CEEEEEEEcCCCCccccCH
Q 045527 137 TLKLASEIN--NKKVVVLTDSGASHNFISN 164 (258)
Q Consensus 137 ~i~i~~~I~--g~~v~aLIDSGAt~sfIs~ 164 (258)
...+.+.|+ .+.+.++|||||+..+|-.
T Consensus 75 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWV~~ 104 (455)
T 3lpj_A 75 GYYVEMTVGSPPQTLNILVDTGSSNFAVGA 104 (455)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEC
T ss_pred EEEEEEEECCCCeEEEEEEcCCCcceEEec
Confidence 567788888 6999999999999988843
No 113
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=35.40 E-value=33 Score=31.43 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=22.4
Q ss_pred eEEEEEEEC--CEEEEEEEcCCCCccccC
Q 045527 137 TLKLASEIN--NKKVVVLTDSGASHNFIS 163 (258)
Q Consensus 137 ~i~i~~~I~--g~~v~aLIDSGAt~sfIs 163 (258)
...+.+.|+ .+++.+++||||+..++-
T Consensus 53 ~Y~~~i~IGTP~Q~~~v~~DTGSs~lWV~ 81 (478)
T 1qdm_A 53 QYFGEIGVGTPPQKFTVIFDTGSSNLWVP 81 (478)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCCEEE
T ss_pred EEEEEEEECCCCeEEEEEEcCCCcceEEe
Confidence 356677887 689999999999998874
No 114
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=32.36 E-value=1.1e+02 Score=21.24 Aligned_cols=44 Identities=5% Similarity=0.047 Sum_probs=35.6
Q ss_pred CCCeEEEEEEECCEEE-EEEEcCCCCccccCHHHHHHcCCCcccC
Q 045527 134 SPKTLKLASEINNKKV-VVLTDSGASHNFISNEVVLVLKLPITNT 177 (258)
Q Consensus 134 ~~~~i~i~~~I~g~~v-~aLIDSGAt~sfIs~~~a~~l~l~~~~~ 177 (258)
....|.+.++.++..+ .+=||.-++..-+-..++...+++....
T Consensus 4 ~~~~m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~Q 48 (96)
T 1wgg_A 4 GSSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQ 48 (96)
T ss_dssp CCCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTS
T ss_pred CCcEEEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHe
Confidence 3456778888888888 5889999999999999999999886543
No 115
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=28.83 E-value=62 Score=28.88 Aligned_cols=29 Identities=7% Similarity=0.061 Sum_probs=23.2
Q ss_pred CCeEEEEEEECC--EEEEEEEcCCCCccccC
Q 045527 135 PKTLKLASEINN--KKVVVLTDSGASHNFIS 163 (258)
Q Consensus 135 ~~~i~i~~~I~g--~~v~aLIDSGAt~sfIs 163 (258)
.....+.+.|+. +++.+++||||+..++.
T Consensus 19 ~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~ 49 (413)
T 3vla_A 19 TLQYVTTINQRTPLVSENLVVDLGGRFLWVD 49 (413)
T ss_dssp TCCEEEEEEETTTTEEEEEEEETTCSSEEEE
T ss_pred CCeEEEEEEcCCCCcceEEEEeCCChhhhcc
Confidence 345677888876 89999999999987773
No 116
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=25.31 E-value=63 Score=22.54 Aligned_cols=55 Identities=7% Similarity=-0.015 Sum_probs=36.3
Q ss_pred CCeEEEEEEE-CCEEEEEEEcCCCCccccCHHHHHHcCCCcccCCCceEeeccccccccc
Q 045527 135 PKTLKLASEI-NNKKVVVLTDSGASHNFISNEVVLVLKLPITNTEPYGVILRTGSATKAQ 193 (258)
Q Consensus 135 ~~~i~i~~~I-~g~~v~aLIDSGAt~sfIs~~~a~~l~l~~~~~~~~~V~~a~G~~~~~~ 193 (258)
...|.+.++- +|.++.+-|..-.+..-|=..++++.+++.. ..++. .+|..+.-.
T Consensus 5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~---~~rf~-FdG~~l~~~ 60 (94)
T 2io1_B 5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMR---QIRFR-FDGQPINET 60 (94)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGG---GEEEE-ETTEECCTT
T ss_pred CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcc---cEEEE-ECCEEcCCC
Confidence 3445555553 5667888888888888888999999998642 22332 366665543
No 117
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=24.96 E-value=17 Score=25.04 Aligned_cols=28 Identities=25% Similarity=0.485 Sum_probs=17.7
Q ss_pred HHHHhhcccCCcceecCCCc----cC-ccccCC
Q 045527 55 EAELQSNQECGLCYKCDEKF----SP-GHRCRK 82 (258)
Q Consensus 55 ~~e~~~rR~~~lCf~Cg~~g----h~-~~~Cp~ 82 (258)
++|.+..+...+|--|+.++ |. +++||.
T Consensus 28 P~~y~~~~v~I~CnDC~~~s~v~~h~lg~kC~~ 60 (79)
T 2k2d_A 28 PSEYQNMTVDILCNDCNGRSTVQFHILGMKCKI 60 (79)
T ss_dssp -----CCEEEEEESSSCCEEEEECCTTCCCCTT
T ss_pred CHHHhCCEeEEECCCCCCCccCCceeecccCcC
Confidence 44555666678999999983 43 679995
No 118
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=22.99 E-value=1.5e+02 Score=19.42 Aligned_cols=41 Identities=5% Similarity=-0.018 Sum_probs=31.5
Q ss_pred CCCeEEEEEEE-CCEEEEEEEcCCCCccccCHHHHHHcCCCc
Q 045527 134 SPKTLKLASEI-NNKKVVVLTDSGASHNFISNEVVLVLKLPI 174 (258)
Q Consensus 134 ~~~~i~i~~~I-~g~~v~aLIDSGAt~sfIs~~~a~~l~l~~ 174 (258)
.+..|.+.++. +++.+.+-++.-+|+.-+-..++++.+++.
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~ 45 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPK 45 (87)
T ss_dssp CSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCT
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCCh
Confidence 34567777775 577788888888888888888999888764
No 119
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=22.53 E-value=55 Score=22.35 Aligned_cols=41 Identities=5% Similarity=-0.058 Sum_probs=31.9
Q ss_pred CeEEEEEEECCEEEEE-EEcCCCCccccCHHHHHHcCCCccc
Q 045527 136 KTLKLASEINNKKVVV-LTDSGASHNFISNEVVLVLKLPITN 176 (258)
Q Consensus 136 ~~i~i~~~I~g~~v~a-LIDSGAt~sfIs~~~a~~l~l~~~~ 176 (258)
..|.+.++.++..+.+ =||..++..=+-..++.+.+++...
T Consensus 6 ~~m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~ 47 (90)
T 1v5t_A 6 SGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPER 47 (90)
T ss_dssp CSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTT
T ss_pred ceEEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHH
Confidence 3456667778888876 6788888888889999999987543
No 120
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=20.28 E-value=2e+02 Score=19.67 Aligned_cols=41 Identities=15% Similarity=0.093 Sum_probs=34.0
Q ss_pred CeEEEEEEECCEEEEEEEcCCCCccccCHHHHHHcCCCccc
Q 045527 136 KTLKLASEINNKKVVVLTDSGASHNFISNEVVLVLKLPITN 176 (258)
Q Consensus 136 ~~i~i~~~I~g~~v~aLIDSGAt~sfIs~~~a~~l~l~~~~ 176 (258)
..|.+.++.+++.+.+=||.-+++.=+-..++...+++...
T Consensus 16 ~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~ 56 (95)
T 1v86_A 16 ELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAM 56 (95)
T ss_dssp CCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTT
T ss_pred ceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHH
Confidence 45677777888888888999999999999999999987544
Done!