BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045528
(195 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8R331|ZNHI1_MOUSE Zinc finger HIT domain-containing protein 1 OS=Mus musculus
GN=Znhit1 PE=2 SV=1
Length = 154
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 69/136 (50%), Gaps = 12/136 (8%)
Query: 60 RLEALENDNAGIETVEINDDDGEASLDDDDDEGYMQKRHSKGTKRKTRQAKALEDARKAP 119
+LEALENDN DD A L Q T +K ++ + +
Sbjct: 31 QLEALENDNF--------QDDPHAGLPQLGKR-LPQFDDDADTGKKKKKTRGDHFKLRFR 81
Query: 120 RSFLELLHEANLESLPPHVPSYLRAAVGPPSKTSRRHFCTVCGFSANYTCVKCGMRFCCI 179
++F LL E NL + P+YL A GPPS+ +R FC VCGF + YTCV CG R+C +
Sbjct: 82 KNFQALLEEQNLSA--SEGPNYLTACAGPPSR-PQRPFCAVCGFPSPYTCVSCGARYCTV 138
Query: 180 RCQNIHDDTRCLKFVA 195
RC H +TRCLK+
Sbjct: 139 RCLGTHQETRCLKWTV 154
>sp|O43257|ZNHI1_HUMAN Zinc finger HIT domain-containing protein 1 OS=Homo sapiens
GN=ZNHIT1 PE=1 SV=1
Length = 154
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 29 ERRMSTRTRKVAPRMAAALASADNRTQAALARLEALENDNAGIETVEINDDDGEASLDDD 88
E++ S R++ R A+ R +LEALENDN DD A L
Sbjct: 3 EKKTSVRSQDPGQRRVLDRAARQRRINR---QLEALENDNF--------QDDPHAGLPQL 51
Query: 89 DDEGYMQKRHSKGTKRKTRQAKALEDARKAPRSFLELLHEANLESLPPHVPSYLRAAVGP 148
Q T +K ++ + + ++F LL E NL P+YL A GP
Sbjct: 52 GKR-LPQFDDDADTGKKKKKTRGDHFKLRFRKNFQALLEEQNLSVA--EGPNYLTACAGP 108
Query: 149 PSKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDDTRCLKFVA 195
PS+ +R FC VCGF + YTCV CG R+C +RC H +TRCLK+
Sbjct: 109 PSR-PQRPFCAVCGFPSPYTCVSCGARYCTVRCLGTHQETRCLKWTV 154
>sp|Q24JY4|ZNHI1_BOVIN Zinc finger HIT domain-containing protein 1 OS=Bos taurus GN=ZNHIT1
PE=2 SV=1
Length = 154
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 29 ERRMSTRTRKVAPRMAAALASADNRTQAALARLEALENDNAGIETVEINDDDGEASLDDD 88
E++ S R++ R A+ R +LEALENDN DD A L
Sbjct: 3 EKKTSVRSQDPGQRRVLDRAARQRRINR---QLEALENDNF--------QDDPHAGLPQL 51
Query: 89 DDEGYMQKRHSKGTKRKTRQAKALEDARKAPRSFLELLHEANLESLPPHVPSYLRAAVGP 148
Q T +K ++ + + ++F LL E NL P+YL A GP
Sbjct: 52 GKR-LPQFDDDADTGKKKKKTRGDHFKLRFRKNFQALLEEQNLSVA--EGPNYLTACAGP 108
Query: 149 PSKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDDTRCLKFVA 195
PS+ +R FC VCGF + YTCV CG R+C +RC H +TRCLK+
Sbjct: 109 PSR-PQRPFCAVCGFPSPYTCVSCGARYCTVRCLGTHQETRCLKWTV 154
>sp|Q54NW0|ZNHI1_DICDI Zinc finger HIT domain-containing protein 1 homolog
OS=Dictyostelium discoideum GN=znhit1 PE=3 SV=1
Length = 177
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 121 SFLELLHEANLESLPPHVPSYLRAAVGPPSKTSRRHFCTVCGFSANYTCVKCGMRFCCIR 180
+F ++L ++ LE+ P HVP+Y+ + PS RHFC++CG+ YTC +C R+C I+
Sbjct: 103 NFNDVLEKSYLETFPDHVPTYI-SVQSKPSIFPPRHFCSICGYIGAYTCKQCSSRYCSIK 161
Query: 181 CQNIHDDTRC 190
C N H++TRC
Sbjct: 162 CFNYHNETRC 171
>sp|Q4U9I8|SEY1_THEAN Protein SEY1 homolog OS=Theileria annulata GN=TA08650 PE=3 SV=1
Length = 918
Score = 53.5 bits (127), Expect = 8e-07, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 18/116 (15%)
Query: 87 DDDDEGYMQKRHSKGTKRKTRQAKALEDARKAPRSFLELLHEANLESLPPHVPSYLRAAV 146
D DDE Y+ K +K + + + P ++ +E+ ++P + RAA
Sbjct: 808 DSDDE-YVGKTVTKSSHSIYKH--------REPMDINLIVDHDEVEAEKNNLPCW-RAAY 857
Query: 147 GPPSKTSRRHFCTVCGFSANYTCVKCGMR--------FCCIRCQNIHDDTRCLKFV 194
+RH C +CGF ANY C C R +C +RC +H++T C K V
Sbjct: 858 ASGPARPQRHLCVICGFFANYKCRNCATRRIEAINSYYCSLRCLEVHNETNCGKAV 913
>sp|O59669|VPS71_SCHPO SWR1 complex subunit vps71 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=vps71 PE=1 SV=2
Length = 139
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%)
Query: 146 VGPPSKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDDTRCLKFVA 195
V PS R FC VCG+ Y C CG +C C+ IH +TRC+K A
Sbjct: 90 VAKPSYKPPRKFCNVCGYWGKYACQNCGTSYCSKGCEVIHSETRCMKVYA 139
>sp|Q03433|VPS71_YEAST Vacuolar protein sorting-associated protein 71 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS71 PE=1
SV=1
Length = 280
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 158 CTVCG-FSANYTCVKCGMRFCCIRCQNIHDDTRC 190
C++CG + + +CV CG + C + C +H++TRC
Sbjct: 244 CSICGGYDSISSCVNCGNKICSVSCFKLHNETRC 277
>sp|Q14202|ZMYM3_HUMAN Zinc finger MYM-type protein 3 OS=Homo sapiens GN=ZMYM3 PE=1 SV=2
Length = 1370
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 25/121 (20%)
Query: 2 SSLTKPITSSPPSSSPSP----LRKKKNMEDERRMSTRTRKVAPRMAAALASADNRTQAA 57
SS TKP SSPP+ P K ER+ S R R+ P + S
Sbjct: 205 SSQTKPGGSSPPAHPSLPGDGLTAKASEKPPERKRSERVRRAEPPKPEVVDST------- 257
Query: 58 LARLEALENDNAGIETVEINDDDGEASLDDDDDEGYMQKRHSKGTKRKTRQAKALEDARK 117
E++ ++D+D +A +DD +DE ++ R + + R + + R
Sbjct: 258 --------------ESIPVSDEDSDAMVDDPNDEDFVPFRPRRSPRMSLRSSVSQRAGRS 303
Query: 118 A 118
A
Sbjct: 304 A 304
>sp|P46973|HIT1_YEAST Protein HIT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=HIT1 PE=1 SV=1
Length = 164
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 158 CTVC-GFSANYTCVKCGMRFCCIRC 181
C +C G Y C KCG+R+C ++C
Sbjct: 8 CGICRGVDGKYKCPKCGVRYCSLKC 32
>sp|Q20JQ7|SC4AB_DANRE Sodium channel protein type 4 subunit alpha B OS=Danio rerio
GN=scn4ab PE=2 SV=1
Length = 1784
Score = 31.6 bits (70), Expect = 3.2, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
Query: 59 ARLEALENDNAGIETVEI-----NDDDGEASLDDDDDEG 92
A++ A+ N ++ + V I +DDDG S +D+DDEG
Sbjct: 854 AKMNAIMNSSSSMVKVPIANGESDDDDGNGSSEDEDDEG 892
>sp|Q2TBW5|ZNHI2_BOVIN Zinc finger HIT domain-containing protein 2 OS=Bos taurus GN=ZNHIT2
PE=2 SV=1
Length = 399
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 7/32 (21%)
Query: 161 CGF-------SANYTCVKCGMRFCCIRCQNIH 185
CGF A YTC +C + +C +RC H
Sbjct: 7 CGFCPTGEAQPARYTCPRCNVPYCSLRCYRAH 38
>sp|Q552Q7|PDS5_DICDI Sister chromatid cohesion protein PDS5 homolog OS=Dictyostelium
discoideum GN=pds5 PE=3 SV=1
Length = 1450
Score = 30.4 bits (67), Expect = 7.0, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 32 MSTRTRKVAPRMAAALASADNRTQAALARLEALENDNAGIETVEINDDDGEASLD-DDDD 90
M+TR + A +A A+ + ++ + +++EN+ + +DDGE D D++D
Sbjct: 1 MATRATRAASEVAKTKAATN---LPSIRKRKSIENEEEESKHNTSINDDGELDSDIDEED 57
Query: 91 EGYMQKRHSKGTKRKTRQAKALEDARKA 118
E +K + ++K AK + +K+
Sbjct: 58 ESKFEKEFTVKKRQKKSPAKTQQQPQKS 85
>sp|Q96JG9|ZN469_HUMAN Zinc finger protein 469 OS=Homo sapiens GN=ZNF469 PE=2 SV=3
Length = 3925
Score = 30.4 bits (67), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 115 ARKAPRSFLELLHEANLESLPPHVPSY---LRAAVGPPSKTSRRHF 157
A APR F + LH++ + LP PS L + GPPS +RHF
Sbjct: 361 AHSAPRPFSDSLHKSLTKILPERPPSAQDGLGSTRGPPSSLPQRHF 406
>sp|Q8VDQ9|KRI1_MOUSE Protein KRI1 homolog OS=Mus musculus GN=Kri1 PE=1 SV=2
Length = 710
Score = 30.0 bits (66), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 13 PSSSPSPLRKKKNMEDERRMSTRTRK--VAPRMAAALASADN-RTQAALARLEALENDNA 69
P S S +R+K E+R TR RK R L N + + LA+LE L
Sbjct: 322 PRSIASSVRRKDERRKEKREETRERKKREKARKQEELKQLKNLKRKEILAKLEKLRQ-AT 380
Query: 70 GIETVEINDDDGEASLDDDDDEGYMQK 96
G ET+ + + D EA D + MQK
Sbjct: 381 GNETLGLEEQDLEADFDPAQHDQLMQK 407
>sp|O74906|BCD1_SCHPO Putative box C/D snoRNA protein SPCC613.07 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC613.07 PE=1 SV=1
Length = 345
Score = 30.0 bits (66), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 153 SRRHFCTVCGFSAN-YTCVKCGMRFCCIRCQNIH 185
+R C+ C +A+ Y C +C RFCC+ C H
Sbjct: 4 NRLGICSTCQKNASKYRCPRCDSRFCCLECNLEH 37
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.128 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,128,377
Number of Sequences: 539616
Number of extensions: 2747933
Number of successful extensions: 19598
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 158
Number of HSP's that attempted gapping in prelim test: 19245
Number of HSP's gapped (non-prelim): 388
length of query: 195
length of database: 191,569,459
effective HSP length: 111
effective length of query: 84
effective length of database: 131,672,083
effective search space: 11060454972
effective search space used: 11060454972
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)