BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045530
(314 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 270 bits (691), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 141/307 (45%), Positives = 200/307 (65%), Gaps = 13/307 (4%)
Query: 16 LKAGFYSSSCPGAEAIVRSTVESHFKKDPTVAAGLLRLHFHDCFVQGCDGSVLI--AGS- 72
L A FYS +CP A AIVRST++ + D + A L+RLHFHDCFV GCD S+L+ GS
Sbjct: 3 LNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGSI 62
Query: 73 SAERSALPNLG-LRGFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPT 131
+E++A PN+ RGF V+D+ KT LE +CPGVVSC+D+LALA+ SV L+ GPSW V
Sbjct: 63 QSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVLL 122
Query: 132 GRRDGRVSSSQGLN--LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQFFRY 189
GRRD ++ G N +PSP++S++ KF+A GL+ +DLV L GAHT G+ C F
Sbjct: 123 GRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVFNN 182
Query: 190 RLYNFTTTGNADPSISQSFLAQLQTLCPKDGDGTKRVALDIDSQNKFDVSFFKNVRDGKG 249
RL+NF+ TGN DP+++ + L+ LQ LCP++G + LD+ + + FD ++F N++ G
Sbjct: 183 RLFNFSGTGNPDPTLNSTLLSTLQQLCPQNGSASTITNLDLSTPDAFDNNYFANLQSNDG 242
Query: 250 VLESDQRLWED--AATRNIVQNYAGTIRGLLGFRFDFEFPKAMIKMSSIEVKTGSDGEIR 307
+L+SDQ L+ ++T IV ++A L F+ F ++MI M +I TGS+GEIR
Sbjct: 243 LLQSDQELFSTTGSSTIAIVTSFAS--NQTLFFQ---AFAQSMINMGNISPLTGSNGEIR 297
Query: 308 KICSKFN 314
C K N
Sbjct: 298 LDCKKVN 304
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 257 bits (656), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 140/309 (45%), Positives = 194/309 (62%), Gaps = 13/309 (4%)
Query: 14 GGLKAGFYSSSCPGAEAIVRSTVESHFKKDPTVAAGLLRLHFHDCFVQGCDGSVLIAGSS 73
G L A FY+ +CP A A+VR+ V+ F+ D + A L+RLHFHDCFV GCD S+L+ S
Sbjct: 2 GSLNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSG 61
Query: 74 A---ERSALPNLG-LRGFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQV 129
+ E++A PN RGF V+D+ KT LE +CPGVVSC D+LALA++ SV LS GPSW V
Sbjct: 62 SIISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTV 121
Query: 130 PTGRRDGRVSSSQGLN--LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQFF 187
GRRD ++ G N +PSP ++ KF+A GL+ +DLV L GAHT G+ C F
Sbjct: 122 DLGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGVF 181
Query: 188 RYRLYNFTTTGNADPSISQSFLAQLQTLCPKDGDGTKRVALDIDSQNKFDVSFFKNVRDG 247
RL+NF+ GN DP+++ + L+ LQ LCP+ G G+ LD+ + + FD ++F N++
Sbjct: 182 SNRLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNLDLSTPDAFDNNYFTNLQSN 241
Query: 248 KGVLESDQRLWED--AATRNIVQNYAGTIRGLLGFRFDFEFPKAMIKMSSIEVKTGSDGE 305
G+L+SDQ L+ +AT IV ++A L F+ F ++MI M +I TGS GE
Sbjct: 242 NGLLQSDQELFSTTGSATIAIVTSFAS--NQTLFFQ---AFAQSMINMGNISPLTGSSGE 296
Query: 306 IRKICSKFN 314
IR C K N
Sbjct: 297 IRLDCKKTN 305
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 256 bits (653), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 139/305 (45%), Positives = 184/305 (60%), Gaps = 13/305 (4%)
Query: 16 LKAGFYSSSCPGAEAIVRSTVESHFKKDPTVAAGLLRLHFHDCFVQGCDGSVLIAGSSAE 75
L Y+ SCP IVR V K + +AA L+RLHFHDCFV GCD S+L+ G+ +E
Sbjct: 2 LSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDGADSE 61
Query: 76 RSALPNLG-LRGFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRR 134
+ A+PN+ RGFEVID K +E +CPGVVSCADIL LAARDSV LS GP W+V GR+
Sbjct: 62 KLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVALGRK 121
Query: 135 DGRVSSSQGLN-LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQFFRYRLYN 193
DG V++ N LPSP + + KF A L+ D+V L GAHT GQ C F RL+N
Sbjct: 122 DGLVANQNSANNLPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAVFSNRLFN 181
Query: 194 FTTTGNADPSISQSFLAQLQTLCPKDGDGTKRVALDIDSQNKFDVSFFKNVRDGKGVLES 253
FT GN D ++ S L+ LQT+CP G+ LD + + FD ++FKN+ +GKG+L S
Sbjct: 182 FTGAGNPDATLETSLLSNLQTVCPLGGNSNITAPLDRSTTDTFDNNYFKNLLEGKGLLSS 241
Query: 254 DQRLWED----AATRNIVQNYAGTIRGLLGFRFDFEFPKAMIKMSSIEVKTGSDGEIRKI 309
DQ L+ T+ +V+ Y+ + L FR +F AMI+M +I G+ GE+R
Sbjct: 242 DQILFSSDLAVNTTKKLVEAYSRSQS--LFFR---DFTCAMIRMGNIS--NGASGEVRTN 294
Query: 310 CSKFN 314
C N
Sbjct: 295 CRVIN 299
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 248 bits (634), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 137/305 (44%), Positives = 184/305 (60%), Gaps = 18/305 (5%)
Query: 16 LKAGFYSSSCPGAEAIVRSTVESHFKKDPTVAAGLLRLHFHDCFVQGCDGSVLIAGSS-- 73
L + FY++ CP A + ++S V S K+ + A LLRLHFHDCFVQGCD SVL+ +S
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 74 -AERSALPNLG-LRGFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPT 131
E++A PN +RGFEVID K+Q+E+ CPGVVSCADILA+AARDSV G SW V
Sbjct: 62 TGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLL 121
Query: 132 GRRDGRVSSSQGLN--LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQFFRY 189
GRRD +S N LP+P +++ F+ KG +LVTL GAHTIGQ C FR
Sbjct: 122 GRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFRT 181
Query: 190 RLYNFTTTGNADPSISQSFLAQLQTLCPKDGDGTKRVALDIDSQNKFDVSFFKNVRDGKG 249
R+YN N DP+ ++S LQ CP G T D+ + NKFD +++ N+R+ KG
Sbjct: 182 RIYN---ESNIDPTYAKS----LQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNKKG 234
Query: 250 VLESDQRLWEDAATRNIVQNYAGTIRGLLGFRFDFEFPKAMIKMSSIEVKTGSDGEIRKI 309
+L SDQ+L+ +T + V Y+ F+ +F AMIKM ++ TG+ G+IR
Sbjct: 235 LLHSDQQLFNGVSTDSQVTAYSNN-----AATFNTDFGNAMIKMGNLSPLTGTSGQIRTN 289
Query: 310 CSKFN 314
C K N
Sbjct: 290 CRKTN 294
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 240 bits (612), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 137/307 (44%), Positives = 189/307 (61%), Gaps = 13/307 (4%)
Query: 16 LKAGFYSSSCPGAEAIVRSTVESHFKKDPTVAAGLLRLHFHDCFVQGCDGSVLI---AGS 72
L+ GFY++SCP AE++V+ V + F + +A GL+R+HFHDCFV+GCD SVL+ A +
Sbjct: 2 LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANN 61
Query: 73 SAERSALPN-LGLRGFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPT 131
+AE+ A+PN LRGFEVI AK+ +EA+CP VSCADILA AARDS +L+ ++QVP+
Sbjct: 62 TAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPS 121
Query: 132 GRRDGRVSSSQGLN--LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQFFRY 189
GRRDG VS + N +PSPL + T FA K L ++VTL GAH+IG C F
Sbjct: 122 GRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFTN 181
Query: 190 RLYNFTTTGNADPSISQSFLAQLQTLCPKDGD--GTKRVALDIDSQNKFDVSFFKNVRDG 247
RLYNF + DP++S S+ A L+ CP + V+LDI + + D ++ V+
Sbjct: 182 RLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGVQLT 241
Query: 248 KGVLESDQRLWEDAATRNIVQNYAGTIRGLLGFRFDFEFPKAMIKMSSIEVKTGSDGEIR 307
G+L SDQ L +A V+ A + + +F +AM+KM IEV TG+ GEIR
Sbjct: 242 LGLLTSDQALVTEANLSAAVKANAMNLTA-----WASKFAQAMVKMGQIEVLTGTQGEIR 296
Query: 308 KICSKFN 314
CS N
Sbjct: 297 TNCSVVN 303
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 229 bits (583), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 180/309 (58%), Gaps = 15/309 (4%)
Query: 16 LKAGFYSSSCPGAEAIVRSTVESHFKKDPTVAAGLLRLHFHDCFVQGCDGSVLIAGSSAE 75
L FY +SCP IVR T+ + + DP +AA +LRLHFHDCFV GCD S+L+ +++
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 76 RSALPNLG----LRGFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPT 131
R+ G RGF VID K +E++CP VSCAD+L +AA+ SV L+ GPSW+VP
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 132 GRRDGRVS--SSQGLNLPSPLDSVTVQRQKFAAKGLD-DHDLVTLVGAHTIGQTDCQFFR 188
GRRD + NLP+P ++ + F GL+ DLV L G HT G+ C+F
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 189 YRLYNFTTTGNADPSISQSFLAQLQTLCPKDGDGTKRVALDIDSQNKFDVSFFKNVRDGK 248
RLYNF+ TG DP+++ ++L L+ LCP +G+ + V +D+ + FD ++ N+ + K
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDMDLRTPTIFDNKYYVNLEEQK 242
Query: 249 GVLESDQRLWEDAA---TRNIVQNYAGTIRGLLGFRFDFEFPKAMIKMSSIEVKTGSDGE 305
G+++SDQ L+ T +V+++A + + F +AM +M +I TG+ G+
Sbjct: 243 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFN-----AFVEAMDRMGNITPLTGTQGQ 297
Query: 306 IRKICSKFN 314
IR C N
Sbjct: 298 IRLNCRVVN 306
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 228 bits (582), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 179/309 (57%), Gaps = 15/309 (4%)
Query: 16 LKAGFYSSSCPGAEAIVRSTVESHFKKDPTVAAGLLRLHFHDCFVQGCDGSVLIAGSSAE 75
L FY +SCP IVR T+ + + DP +AA +LRLHFHDCFV GCD S+L+ +++
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 76 RSALPNLG----LRGFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPT 131
R+ G RGF VID K +E++CP VSCAD+L +AA+ SV L+ GPSW+VP
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 132 GRRDGRVS--SSQGLNLPSPLDSVTVQRQKFAAKGLD-DHDLVTLVGAHTIGQTDCQFFR 188
GRRD + NLP+P ++ + F GL+ DLV L G HT G+ C+F
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRFIM 181
Query: 189 YRLYNFTTTGNADPSISQSFLAQLQTLCPKDGDGTKRVALDIDSQNKFDVSFFKNVRDGK 248
RLYNF+ TG DP+++ ++L L+ LCP +G+ + V D+ + FD ++ N+ + K
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 241
Query: 249 GVLESDQRLWEDAA---TRNIVQNYAGTIRGLLGFRFDFEFPKAMIKMSSIEVKTGSDGE 305
G+++SDQ L+ T +V+++A + + F +AM +M +I TG+ G+
Sbjct: 242 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFN-----AFVEAMDRMGNITPLTGTQGQ 296
Query: 306 IRKICSKFN 314
IR C N
Sbjct: 297 IRLNCRVVN 305
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 228 bits (581), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 179/309 (57%), Gaps = 15/309 (4%)
Query: 16 LKAGFYSSSCPGAEAIVRSTVESHFKKDPTVAAGLLRLHFHDCFVQGCDGSVLIAGSSAE 75
L FY +SCP IVR T+ + + DP +AA +LRLHFHDCFV GCD S+L+ +++
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 76 RSALPNLG----LRGFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPT 131
R+ G RGF VID K +E++CP VSCAD+L +AA+ SV L+ GPSW+VP
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 132 GRRDGRVS--SSQGLNLPSPLDSVTVQRQKFAAKGLD-DHDLVTLVGAHTIGQTDCQFFR 188
GRRD + NLP+P ++ + F GL+ DLV L G HT G+ C+F
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 189 YRLYNFTTTGNADPSISQSFLAQLQTLCPKDGDGTKRVALDIDSQNKFDVSFFKNVRDGK 248
RLYNF+ TG DP+++ ++L L+ LCP +G+ + V D+ + FD ++ N+ + K
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 242
Query: 249 GVLESDQRLWEDAA---TRNIVQNYAGTIRGLLGFRFDFEFPKAMIKMSSIEVKTGSDGE 305
G+++SDQ L+ T +V+++A + + F +AM +M +I TG+ G+
Sbjct: 243 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFN-----AFVEAMDRMGNITPLTGTQGQ 297
Query: 306 IRKICSKFN 314
IR C N
Sbjct: 298 IRLNCRVVN 306
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 228 bits (581), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 179/309 (57%), Gaps = 15/309 (4%)
Query: 16 LKAGFYSSSCPGAEAIVRSTVESHFKKDPTVAAGLLRLHFHDCFVQGCDGSVLIAGSSAE 75
L FY +SCP IVR T+ + + DP +AA +LRLHFHDCFV GCD S+L+ +++
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 76 RSALPNLG----LRGFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPT 131
R+ G RGF VID K +E++CP VSCAD+L +AA+ SV L+ GPSW+VP
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 132 GRRDGRVS--SSQGLNLPSPLDSVTVQRQKFAAKGLD-DHDLVTLVGAHTIGQTDCQFFR 188
GRRD + NLP+P ++ + F GL+ DLV L G HT G+ C+F
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 189 YRLYNFTTTGNADPSISQSFLAQLQTLCPKDGDGTKRVALDIDSQNKFDVSFFKNVRDGK 248
RLYNF+ TG DP+++ ++L L+ LCP +G+ + V D+ + FD ++ N+ + K
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 241
Query: 249 GVLESDQRLWEDAA---TRNIVQNYAGTIRGLLGFRFDFEFPKAMIKMSSIEVKTGSDGE 305
G+++SDQ L+ T +V+++A + + F +AM +M +I TG+ G+
Sbjct: 242 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFN-----AFVEAMDRMGNITPLTGTQGQ 296
Query: 306 IRKICSKFN 314
IR C N
Sbjct: 297 IRLNCRVVN 305
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 228 bits (580), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 179/309 (57%), Gaps = 15/309 (4%)
Query: 16 LKAGFYSSSCPGAEAIVRSTVESHFKKDPTVAAGLLRLHFHDCFVQGCDGSVLIAGSSAE 75
L FY +SCP IVR T+ + + DP +AA +LRLHFHDCFV GCD S+L+ +++
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 76 RSALPNLG----LRGFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPT 131
R+ G RGF VID K +E++CP VSCAD+L +AA+ SV L+ GPSW+VP
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 132 GRRDGRVS--SSQGLNLPSPLDSVTVQRQKFAAKGLD-DHDLVTLVGAHTIGQTDCQFFR 188
GRRD + NLP+P ++ + F GL+ DLV L G HT G+ C+F
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 189 YRLYNFTTTGNADPSISQSFLAQLQTLCPKDGDGTKRVALDIDSQNKFDVSFFKNVRDGK 248
RLYNF+ TG DP+++ ++L L+ LCP +G+ + V D+ + FD ++ N+ + K
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 241
Query: 249 GVLESDQRLWEDAA---TRNIVQNYAGTIRGLLGFRFDFEFPKAMIKMSSIEVKTGSDGE 305
G+++SDQ L+ T +V+++A + + F +AM +M +I TG+ G+
Sbjct: 242 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFN-----AFVEAMDRMGNITPLTGTQGQ 296
Query: 306 IRKICSKFN 314
IR C N
Sbjct: 297 IRLNCRVVN 305
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 228 bits (580), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 179/309 (57%), Gaps = 15/309 (4%)
Query: 16 LKAGFYSSSCPGAEAIVRSTVESHFKKDPTVAAGLLRLHFHDCFVQGCDGSVLIAGSSAE 75
L FY +SCP IVR T+ + + DP +AA +LRLHFHDCFV GCD S+L+ +++
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 76 RSALPNLG----LRGFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPT 131
R+ G RGF VID K +E++CP VSCAD+L +AA+ SV L+ GPSW+VP
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 132 GRRDGRVS--SSQGLNLPSPLDSVTVQRQKFAAKGLD-DHDLVTLVGAHTIGQTDCQFFR 188
GRRD + NLP+P ++ + F GL+ DLV L G HT G+ C+F
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 189 YRLYNFTTTGNADPSISQSFLAQLQTLCPKDGDGTKRVALDIDSQNKFDVSFFKNVRDGK 248
RLYNF+ TG DP+++ ++L L+ LCP +G+ + V D+ + FD ++ N+ + K
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 241
Query: 249 GVLESDQRLWEDAA---TRNIVQNYAGTIRGLLGFRFDFEFPKAMIKMSSIEVKTGSDGE 305
G+++SDQ L+ T +V+++A + + F +AM +M +I TG+ G+
Sbjct: 242 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFN-----AFVEAMDRMGNITPLTGTQGQ 296
Query: 306 IRKICSKFN 314
IR C N
Sbjct: 297 IRLNCRVVN 305
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 227 bits (579), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 178/309 (57%), Gaps = 15/309 (4%)
Query: 16 LKAGFYSSSCPGAEAIVRSTVESHFKKDPTVAAGLLRLHFHDCFVQGCDGSVLIAGSSAE 75
L FY +SCP IVR T+ + + DP +AA +LRLHFHDCFV GCD S+L+ +++
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 76 RSALPNLG----LRGFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPT 131
R+ G RGF VID K +E++CP VSCAD+L +AA+ SV L+ GPSW+VP
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 132 GRRDGRVS--SSQGLNLPSPLDSVTVQRQKFAAKGLD-DHDLVTLVGAHTIGQTDCQFFR 188
GRRD + NLP P ++ + F GL+ DLV L G HT G+ C+F
Sbjct: 123 GRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 189 YRLYNFTTTGNADPSISQSFLAQLQTLCPKDGDGTKRVALDIDSQNKFDVSFFKNVRDGK 248
RLYNF+ TG DP+++ ++L L+ LCP +G+ + V D+ + FD ++ N+ + K
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 242
Query: 249 GVLESDQRLWEDAA---TRNIVQNYAGTIRGLLGFRFDFEFPKAMIKMSSIEVKTGSDGE 305
G+++SDQ L+ T +V+++A + + F +AM +M +I TG+ G+
Sbjct: 243 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFN-----AFVEAMDRMGNITPLTGTQGQ 297
Query: 306 IRKICSKFN 314
IR C N
Sbjct: 298 IRLNCRVVN 306
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 227 bits (578), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 130/309 (42%), Positives = 181/309 (58%), Gaps = 17/309 (5%)
Query: 16 LKAGFYSSSCPGAEAIVRSTVESHFKKDPTVAAGLLRLHFHDCFVQGCDGSVLIAGS--- 72
L FY +CP IV + DP + A L+RLHFHDCFVQGCDGSVL+ +
Sbjct: 2 LTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTI 61
Query: 73 SAERSALPNLG-LRGFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPT 131
+E+ ALPN+ +RG +V++D KT +E SCP VSCADILA+AA + L GP W VP
Sbjct: 62 ESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPL 121
Query: 132 GRRD----GRVSSSQGLNLPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQFF 187
GRRD R ++Q NLP+P ++T + FA +GL+ DLVTL G HT G+ C F
Sbjct: 122 GRRDSLTANRTLANQ--NLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTF 179
Query: 188 RYRLYNFTTTGNADPSISQSFLAQLQTLCPKDGDGTKRVALDIDSQNKFDVSFFKNVRDG 247
RLYNF+ TGN DP+++ ++L L+ CP++ G LD+ + ++FD ++ N+
Sbjct: 180 INRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNLLQL 239
Query: 248 KGVLESDQRLWED--AATRNIVQNYAGTIRGLLGFRFDFEFPKAMIKMSSIEVKTGSDGE 305
G+L+SDQ L+ A T IV +++ F +MIKM +I V TG +GE
Sbjct: 240 NGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFS-----NFRVSMIKMGNIGVLTGDEGE 294
Query: 306 IRKICSKFN 314
IR C+ N
Sbjct: 295 IRLQCNFVN 303
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 227 bits (578), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 178/309 (57%), Gaps = 15/309 (4%)
Query: 16 LKAGFYSSSCPGAEAIVRSTVESHFKKDPTVAAGLLRLHFHDCFVQGCDGSVLIAGSSAE 75
L FY +SCP IVR T+ + + DP +AA +LRLHFHDCFV GCD S+L+ +++
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 76 RSALPNLG----LRGFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPT 131
R+ G RGF VID K +E++CP VSCAD+L +AA+ SV L+ GPSW+VP
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 132 GRRDGRVS--SSQGLNLPSPLDSVTVQRQKFAAKGLD-DHDLVTLVGAHTIGQTDCQFFR 188
GRRD + NLP P ++ + F GL+ DLV L G HT G+ C+F
Sbjct: 123 GRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 189 YRLYNFTTTGNADPSISQSFLAQLQTLCPKDGDGTKRVALDIDSQNKFDVSFFKNVRDGK 248
RLYNF+ TG DP+++ ++L L+ LCP +G+ + V D+ + FD ++ N+ + K
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 242
Query: 249 GVLESDQRLWEDAA---TRNIVQNYAGTIRGLLGFRFDFEFPKAMIKMSSIEVKTGSDGE 305
G+++SDQ L+ T +V+++A + + F +AM +M +I TG+ G+
Sbjct: 243 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFN-----AFVEAMDRMGNITPLTGTQGQ 297
Query: 306 IRKICSKFN 314
IR C N
Sbjct: 298 IRLNCRVVN 306
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 226 bits (576), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 179/309 (57%), Gaps = 15/309 (4%)
Query: 16 LKAGFYSSSCPGAEAIVRSTVESHFKKDPTVAAGLLRLHFHDCFVQGCDGSVLIAGSSAE 75
L FY +SCP IVR T+ + + DP +AA +LRLHFHDCFV GCD S+L+ +++
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 76 RSALPNLG----LRGFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPT 131
R+ G RGF VID K +E++CP VSCAD+L +AA+ SV L+ GPSW+VP
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 132 GRRDGRVS--SSQGLNLPSPLDSVTVQRQKFAAKGLD-DHDLVTLVGAHTIGQTDCQFFR 188
GRRD + NLP+P ++ + F GL+ DLV L G H+ G+ C+F
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRFIM 181
Query: 189 YRLYNFTTTGNADPSISQSFLAQLQTLCPKDGDGTKRVALDIDSQNKFDVSFFKNVRDGK 248
RLYNF+ TG DP+++ ++L L+ LCP +G+ + V D+ + FD ++ N+ + K
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 241
Query: 249 GVLESDQRLWEDAA---TRNIVQNYAGTIRGLLGFRFDFEFPKAMIKMSSIEVKTGSDGE 305
G+++SDQ L+ T +V+++A + + F +AM +M +I TG+ G+
Sbjct: 242 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFN-----AFVEAMDRMGNITPLTGTQGQ 296
Query: 306 IRKICSKFN 314
IR C N
Sbjct: 297 IRLNCRVVN 305
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 224 bits (572), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 178/309 (57%), Gaps = 15/309 (4%)
Query: 16 LKAGFYSSSCPGAEAIVRSTVESHFKKDPTVAAGLLRLHFHDCFVQGCDGSVLIAGSSAE 75
L FY +SCP IVR T+ + + DP +AA +LRLHF DCFV GCD S+L+ +++
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTSF 62
Query: 76 RSALPNLG----LRGFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPT 131
R+ G RGF VID K +E++CP VSCAD+L +AA+ SV L+ GPSW+VP
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 132 GRRDGRVS--SSQGLNLPSPLDSVTVQRQKFAAKGLD-DHDLVTLVGAHTIGQTDCQFFR 188
GRRD + NLP+P ++ + F GL+ DLV L G HT G+ C+F
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 189 YRLYNFTTTGNADPSISQSFLAQLQTLCPKDGDGTKRVALDIDSQNKFDVSFFKNVRDGK 248
RLYNF+ TG DP+++ ++L L+ LCP +G+ + V D+ + FD ++ N+ + K
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 242
Query: 249 GVLESDQRLWEDAA---TRNIVQNYAGTIRGLLGFRFDFEFPKAMIKMSSIEVKTGSDGE 305
G+++SDQ L+ T +V+++A + + F +AM +M +I TG+ G+
Sbjct: 243 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFN-----AFVEAMDRMGNITPLTGTQGQ 297
Query: 306 IRKICSKFN 314
IR C N
Sbjct: 298 IRLNCRVVN 306
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 224 bits (571), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 178/309 (57%), Gaps = 15/309 (4%)
Query: 16 LKAGFYSSSCPGAEAIVRSTVESHFKKDPTVAAGLLRLHFHDCFVQGCDGSVLIAGSSAE 75
L FY +SCP IVR T+ + + DP +AA +LRLHFHDCFV GCD S+L+ +++
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 76 RSALPNLG----LRGFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPT 131
R+ G RGF VID K +E++CP VSCAD+L +AA+ SV L+ GPSW+VP
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 132 GRRDGRVS--SSQGLNLPSPLDSVTVQRQKFAAKGLD-DHDLVTLVGAHTIGQTDCQFFR 188
GRRD + NLP+P ++ + F GL+ DLV L G HT G+ C+
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRSIM 182
Query: 189 YRLYNFTTTGNADPSISQSFLAQLQTLCPKDGDGTKRVALDIDSQNKFDVSFFKNVRDGK 248
RLYNF+ TG DP+++ ++L L+ LCP +G+ + V D+ + FD ++ N+ + K
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 242
Query: 249 GVLESDQRLWEDAA---TRNIVQNYAGTIRGLLGFRFDFEFPKAMIKMSSIEVKTGSDGE 305
G+++SDQ L+ T +V+++A + + F +AM +M +I TG+ G+
Sbjct: 243 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFN-----AFVEAMDRMGNITPLTGTQGQ 297
Query: 306 IRKICSKFN 314
IR C N
Sbjct: 298 IRLNCRVVN 306
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 135/309 (43%), Positives = 187/309 (60%), Gaps = 20/309 (6%)
Query: 15 GLKAGFYSSSCPGAEAIVRSTVESHFKKDPTVAAGLLRLHFHDCFVQGCDGSVLIAGSS- 73
GL FY +CP AE+IVR V+ +KD +AAGLLRLHFHDCFVQGCD SVL+ GS+
Sbjct: 8 GLSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSAT 67
Query: 74 --AERSALPNLGLR--GFEVIDDAKTQLEASCPG-VVSCADILALAARDSVDLSDGPSWQ 128
E+ A PNL LR F+ ++D + +LE C G VVSC+DILALAARDSV +S GP ++
Sbjct: 68 GPGEQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGGPDYR 127
Query: 129 VPTGRRDGR-VSSSQGL--NLPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
VP GRRD R +S+Q + +LP P +V GLD DLVT+ G HTIG C
Sbjct: 128 VPLGRRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIGLAHCS 187
Query: 186 FFRYRLYNFTTTGNADPSISQSFLAQLQTLCPKDGDGTKRVALDIDSQNKFDVSFFKNVR 245
F RL+ DP+IS +FL++L+ CP G +R LD+ + N FD ++ ++
Sbjct: 188 SFEDRLFP-----RPDPTISPTFLSRLKRTCPAKGT-DRRTVLDVRTPNVFDNKYYIDLV 241
Query: 246 DGKGVLESDQRLWEDAATRNIVQNYAGTIRGLLGFRFDFEFPKAMIKMSSIEVKTGSDGE 305
+ +G+ SDQ L+ +A TR IV+ +A + + +F ++ KM + V+T GE
Sbjct: 242 NREGLFVSDQDLFTNAITRPIVERFAQSQQDFFE-----QFGVSIGKMGQMRVRTSDQGE 296
Query: 306 IRKICSKFN 314
+R+ CS N
Sbjct: 297 VRRNCSVRN 305
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 222 bits (565), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 177/309 (57%), Gaps = 15/309 (4%)
Query: 16 LKAGFYSSSCPGAEAIVRSTVESHFKKDPTVAAGLLRLHFHDCFVQGCDGSVLIAGSSAE 75
L FY +SCP IVR T+ + + DP +AA +L LHF DCFV GCD S+L+ +++
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTSF 61
Query: 76 RSALPNLG----LRGFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPT 131
R+ G RGF VID K +E++CP VSCAD+L +AA+ SV L+ GPSW+VP
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 132 GRRDGRVS--SSQGLNLPSPLDSVTVQRQKFAAKGLD-DHDLVTLVGAHTIGQTDCQFFR 188
GRRD + NLP+P ++ + F GL+ DLV L G HT G+ C+F
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 189 YRLYNFTTTGNADPSISQSFLAQLQTLCPKDGDGTKRVALDIDSQNKFDVSFFKNVRDGK 248
RLYNF+ TG DP+++ ++L L+ LCP +G+ + V D+ + FD ++ N+ + K
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 241
Query: 249 GVLESDQRLWEDAA---TRNIVQNYAGTIRGLLGFRFDFEFPKAMIKMSSIEVKTGSDGE 305
G+++SDQ L+ T +V+++A + + F +AM +M +I TG+ G+
Sbjct: 242 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFN-----AFVEAMDRMGNITPLTGTQGQ 296
Query: 306 IRKICSKFN 314
IR C N
Sbjct: 297 IRLNCRVVN 305
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 112/273 (41%), Gaps = 34/273 (12%)
Query: 32 VRSTVESHFKKDPTVAAGLLRLHFH-----DCFVQGCDGSVLIAGSSAERSALPNLGLRG 86
+R+ +E + + L+RL +H DCF + DGS A + L G +G
Sbjct: 12 LRADIEDMISEKLELGPSLIRLAWHEAASYDCFKK--DGSPNSASMRFKPECL-YAGNKG 68
Query: 87 FEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGR---RDGRVSSSQG 143
++ A L+ P + S AD+ LAA +++ GP+ GR +DG V G
Sbjct: 69 LDIPRKALETLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDG 127
Query: 144 LNLPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQFFRYRLYNFTTTGNADPS 203
LP + + R+ F G +D + V L+GAHT G+T +F Y D S
Sbjct: 128 -RLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGETHIEFSGYHGPWTHDKNGFDNS 186
Query: 204 ISQSFLAQLQTLCPKDGDGTKRVALDIDSQNKFDVSFFKNVRDGKGVLESDQRLWEDAAT 263
L + L PK ++ D + K + +L SD L D +
Sbjct: 187 FFTQLLDEDWVLNPK-----------VEQMQLMDRATTKLM-----MLPSDVCLLLDPSY 230
Query: 264 RNIVQNYAGTIRGLLGFRFDFEFPKAMIKMSSI 296
R V+ YA RF+ +F A K++ +
Sbjct: 231 RKYVELYAKD-----NDRFNKDFANAFKKLTEL 258
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 111/273 (40%), Gaps = 34/273 (12%)
Query: 32 VRSTVESHFKKDPTVAAGLLRLHFH-----DCFVQGCDGSVLIAGSSAERSALPNLGLRG 86
+R+ +E + + L+RL +H DCF + DGS A + L G +G
Sbjct: 11 LRADIEDMISEKLELGPSLIRLAWHEAASYDCFKK--DGSPNSASMRFKPECL-YAGNKG 67
Query: 87 FEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGR---RDGRVSSSQG 143
++ A L+ P + S AD+ LAA +++ GP+ GR +DG V G
Sbjct: 68 LDIPRKALETLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDG 126
Query: 144 LNLPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQFFRYRLYNFTTTGNADPS 203
LP + + R+ F G +D + V L+GAHT G+ +F Y D S
Sbjct: 127 -RLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGECHIEFSGYHGPWTHDKNGFDNS 185
Query: 204 ISQSFLAQLQTLCPKDGDGTKRVALDIDSQNKFDVSFFKNVRDGKGVLESDQRLWEDAAT 263
L + L PK ++ D + K + +L SD L D +
Sbjct: 186 FFTQLLDEDWVLNPK-----------VEQMQLMDRATTKLM-----MLPSDVCLLLDPSY 229
Query: 264 RNIVQNYAGTIRGLLGFRFDFEFPKAMIKMSSI 296
R V+ YA RF+ +F A K++ +
Sbjct: 230 RKYVELYAKD-----NDRFNKDFANAFKKLTEL 257
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 111/273 (40%), Gaps = 34/273 (12%)
Query: 32 VRSTVESHFKKDPTVAAGLLRLHFH-----DCFVQGCDGSVLIAGSSAERSALPNLGLRG 86
+R+ +E + + L+RL +H DCF + DGS A + L G +G
Sbjct: 12 LRADIEDMISEKLELGPSLIRLAWHEAASYDCFKK--DGSPNSASMRFKPECL-YAGNKG 68
Query: 87 FEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGR---RDGRVSSSQG 143
++ A L+ P + S AD+ LAA +++ GP+ GR +DG V G
Sbjct: 69 LDIPRKALETLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDG 127
Query: 144 LNLPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQFFRYRLYNFTTTGNADPS 203
LP + + R+ F G +D + V L+GAHT G+ +F Y D S
Sbjct: 128 -RLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGECHIEFSGYHGPWTHDKNGFDNS 186
Query: 204 ISQSFLAQLQTLCPKDGDGTKRVALDIDSQNKFDVSFFKNVRDGKGVLESDQRLWEDAAT 263
L + L PK ++ D + K + +L SD L D +
Sbjct: 187 FFTQLLDEDWVLNPK-----------VEQMQLMDRATTKLM-----MLPSDVCLLLDPSY 230
Query: 264 RNIVQNYAGTIRGLLGFRFDFEFPKAMIKMSSI 296
R V+ YA RF+ +F A K++ +
Sbjct: 231 RKYVELYAKD-----NDRFNKDFANAFKKLTEL 258
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 89/211 (42%), Gaps = 45/211 (21%)
Query: 105 VSCADILALAARDSVDLSDGPSWQVPTGRRD----------GRVSSSQGLNLPSPLDSVT 154
V+ AD+ LA+ +++ + GP + GR D GR+ + PSP +
Sbjct: 87 VTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGRLPDA---GPPSPAQHL- 142
Query: 155 VQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQFFRYRLYNFTTTGNADPSISQSFLAQLQT 214
R F GL+D ++V L GAHT+G++ +S + +T
Sbjct: 143 --RDVFYRMGLNDKEIVALSGAHTLGRS--------------------RPDRSGWGKPET 180
Query: 215 LCPKDGDGTKRVALDIDSQNKFDVSFFKNVRDGKG----VLESDQRLWEDAATRNIVQNY 270
KDG G KFD S+FK++++ + VL +D L+ED + + + Y
Sbjct: 181 KYTKDGPGAPGGQSWTAQWLKFDNSYFKDIKERRDEDLLVLPTDAALFEDPSFKVYAEKY 240
Query: 271 AGTIRGLLGFRFDFEFPKAMIKMSSIEVKTG 301
A ++ +A K+S++ K G
Sbjct: 241 AADPEAFFK-----DYAEAHAKLSNLGAKFG 266
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 64/173 (36%), Gaps = 42/173 (24%)
Query: 104 VVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVSSSQGLNLPSPLDSVTVQRQKFA-A 162
+VS AD LA +V+++ GP GR D +G LP R F A
Sbjct: 89 IVSYADFYQLAGVVAVEITGGPEVPFHPGREDKPEPPPEG-RLPDATKGSDHLRDVFGKA 147
Query: 163 KGLDDHDLVTLVGAHTIGQTDCQFFRYRLYNFTTTGNADPSISQSFLAQLQTLCPKDGDG 222
GL D D+V L G HTIG + +G P S +
Sbjct: 148 MGLSDQDIVALSGGHTIGAAHKE----------RSGFEGPWTSNPLI------------- 184
Query: 223 TKRVALDIDSQNKFDVSFFKNV----RDGKGVLESDQRLWEDAATRNIVQNYA 271
FD S+F + +DG L SD+ L D+ R +V+ YA
Sbjct: 185 -------------FDNSYFTELLTGEKDGLLQLPSDKALLTDSVFRPLVEKYA 224
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 68/180 (37%), Gaps = 43/180 (23%)
Query: 97 LEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVSSSQGLNLPSPLDSVTVQ 156
L+A P ++S AD LA +V+++ GP GR D +G LP
Sbjct: 95 LKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG-RLPDATKGSDHL 152
Query: 157 RQKFA-AKGLDDHDLVTLVGAHTIGQTDCQFFRYRLYNFTTTGNADPSISQSFLAQLQTL 215
R F A GL D D+V L G HTIG + +G P S +
Sbjct: 153 RDVFGKAMGLTDQDIVALSGGHTIGAAHKE----------RSGFEGPWTSNPLI------ 196
Query: 216 CPKDGDGTKRVALDIDSQNKFDVSFFKNVRDG--KGVLE--SDQRLWEDAATRNIVQNYA 271
FD S+F + G +G+L+ SD+ L D R +V YA
Sbjct: 197 --------------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYA 236
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 68/180 (37%), Gaps = 43/180 (23%)
Query: 97 LEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVSSSQGLNLPSPLDSVTVQ 156
L+A P ++S AD LA +V+++ GP GR D +G LP
Sbjct: 95 LKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG-RLPDATKGSDHL 152
Query: 157 RQKFA-AKGLDDHDLVTLVGAHTIGQTDCQFFRYRLYNFTTTGNADPSISQSFLAQLQTL 215
R F A GL D D+V L G HTIG + +G P S +
Sbjct: 153 RDVFGKAMGLTDQDIVALSGGHTIGAAHKE----------ASGFEGPWTSNPLI------ 196
Query: 216 CPKDGDGTKRVALDIDSQNKFDVSFFKNVRDG--KGVLE--SDQRLWEDAATRNIVQNYA 271
FD S+F + G +G+L+ SD+ L D R +V YA
Sbjct: 197 --------------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYA 236
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 68/180 (37%), Gaps = 43/180 (23%)
Query: 97 LEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVSSSQGLNLPSPLDSVTVQ 156
L+A P ++S AD LA +V+++ GP GR D +G LP
Sbjct: 83 LKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG-RLPDATKGSDHL 140
Query: 157 RQKFA-AKGLDDHDLVTLVGAHTIGQTDCQFFRYRLYNFTTTGNADPSISQSFLAQLQTL 215
R F A GL D D+V L G HTIG + +G P S +
Sbjct: 141 RDVFGKAMGLTDQDIVALSGGHTIGAAHKE----------RSGFEGPWTSNPLI------ 184
Query: 216 CPKDGDGTKRVALDIDSQNKFDVSFFKNVRDG--KGVLE--SDQRLWEDAATRNIVQNYA 271
FD S+F + G +G+L+ SD+ L D R +V YA
Sbjct: 185 --------------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYA 224
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 68/180 (37%), Gaps = 43/180 (23%)
Query: 97 LEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVSSSQGLNLPSPLDSVTVQ 156
L+A P ++S AD LA +V+++ GP GR D +G LP
Sbjct: 95 LKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG-RLPDATKGSDHL 152
Query: 157 RQKFA-AKGLDDHDLVTLVGAHTIGQTDCQFFRYRLYNFTTTGNADPSISQSFLAQLQTL 215
R F A GL D D+V L G HTIG + +G P S +
Sbjct: 153 RDVFGKAMGLTDQDIVALSGGHTIGAAHKE----------RSGFEGPWTSNPLI------ 196
Query: 216 CPKDGDGTKRVALDIDSQNKFDVSFFKNVRDG--KGVLE--SDQRLWEDAATRNIVQNYA 271
FD S+F + G +G+L+ SD+ L D R +V YA
Sbjct: 197 --------------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYA 236
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 68/180 (37%), Gaps = 43/180 (23%)
Query: 97 LEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVSSSQGLNLPSPLDSVTVQ 156
L+A P ++S AD LA +V+++ GP GR D +G LP
Sbjct: 83 LKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG-RLPDATKGSDHL 140
Query: 157 RQKFA-AKGLDDHDLVTLVGAHTIGQTDCQFFRYRLYNFTTTGNADPSISQSFLAQLQTL 215
R F A GL D D+V L G HTIG + +G P S +
Sbjct: 141 RDVFGKAMGLTDQDIVALSGGHTIGAAHKE----------RSGFEGPWTSNPLI------ 184
Query: 216 CPKDGDGTKRVALDIDSQNKFDVSFFKNVRDG--KGVLE--SDQRLWEDAATRNIVQNYA 271
FD S+F + G +G+L+ SD+ L D R +V YA
Sbjct: 185 --------------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYA 224
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 68/180 (37%), Gaps = 43/180 (23%)
Query: 97 LEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVSSSQGLNLPSPLDSVTVQ 156
L+A P ++S AD LA +V+++ GP GR D +G LP
Sbjct: 95 LKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG-RLPDATKGSDHL 152
Query: 157 RQKFA-AKGLDDHDLVTLVGAHTIGQTDCQFFRYRLYNFTTTGNADPSISQSFLAQLQTL 215
R F A GL D D+V L G HTIG + +G P S +
Sbjct: 153 RDVFGKAMGLTDQDIVALSGGHTIGAAHKE----------RSGFEGPWTSNPLI------ 196
Query: 216 CPKDGDGTKRVALDIDSQNKFDVSFFKNVRDG--KGVLE--SDQRLWEDAATRNIVQNYA 271
FD S+F + G +G+L+ SD+ L D R +V YA
Sbjct: 197 --------------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYA 236
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 68/180 (37%), Gaps = 43/180 (23%)
Query: 97 LEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVSSSQGLNLPSPLDSVTVQ 156
L+A P ++S AD LA +V+++ GP GR D +G LP
Sbjct: 83 LKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG-RLPDATKGSDHL 140
Query: 157 RQKFA-AKGLDDHDLVTLVGAHTIGQTDCQFFRYRLYNFTTTGNADPSISQSFLAQLQTL 215
R F A GL D D+V L G HTIG + +G P S +
Sbjct: 141 RDVFGKAMGLTDQDIVALSGGHTIGAAHKE----------RSGFEGPWTSNPLI------ 184
Query: 216 CPKDGDGTKRVALDIDSQNKFDVSFFKNVRDG--KGVLE--SDQRLWEDAATRNIVQNYA 271
FD S+F + G +G+L+ SD+ L D R +V YA
Sbjct: 185 --------------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYA 224
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 68/180 (37%), Gaps = 43/180 (23%)
Query: 97 LEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVSSSQGLNLPSPLDSVTVQ 156
L+A P ++S AD LA +V+++ GP GR D +G LP
Sbjct: 83 LKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG-RLPDATKGSDHL 140
Query: 157 RQKFA-AKGLDDHDLVTLVGAHTIGQTDCQFFRYRLYNFTTTGNADPSISQSFLAQLQTL 215
R F A GL D D+V L G HTIG + +G P S +
Sbjct: 141 RDVFGKAMGLTDQDIVALSGGHTIGAAHKE----------RSGFEGPWTSNPLI------ 184
Query: 216 CPKDGDGTKRVALDIDSQNKFDVSFFKNVRDG--KGVLE--SDQRLWEDAATRNIVQNYA 271
FD S+F + G +G+L+ SD+ L D R +V YA
Sbjct: 185 --------------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYA 224
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 68/180 (37%), Gaps = 43/180 (23%)
Query: 97 LEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVSSSQGLNLPSPLDSVTVQ 156
L+A P ++S AD LA +V+++ GP GR D +G LP
Sbjct: 95 LKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG-RLPDATKGSDHL 152
Query: 157 RQKFA-AKGLDDHDLVTLVGAHTIGQTDCQFFRYRLYNFTTTGNADPSISQSFLAQLQTL 215
R F A GL D D+V L G HTIG + +G P S +
Sbjct: 153 RDVFGKAMGLTDQDIVALSGGHTIGAAHKE----------RSGFEGPWTSNPLI------ 196
Query: 216 CPKDGDGTKRVALDIDSQNKFDVSFFKNVRDG--KGVLE--SDQRLWEDAATRNIVQNYA 271
FD S+F + G +G+L+ SD+ L D R +V YA
Sbjct: 197 --------------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYA 236
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 68/180 (37%), Gaps = 43/180 (23%)
Query: 97 LEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVSSSQGLNLPSPLDSVTVQ 156
L+A P ++S AD LA +V+++ GP GR D +G LP
Sbjct: 95 LKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG-RLPDATKGSDHL 152
Query: 157 RQKFA-AKGLDDHDLVTLVGAHTIGQTDCQFFRYRLYNFTTTGNADPSISQSFLAQLQTL 215
R F A GL D D+V L G HTIG + +G P S +
Sbjct: 153 RDVFGKAMGLTDQDIVALSGGHTIGAAHKE----------RSGFEGPWTSNPLI------ 196
Query: 216 CPKDGDGTKRVALDIDSQNKFDVSFFKNVRDG--KGVLE--SDQRLWEDAATRNIVQNYA 271
FD S+F + G +G+L+ SD+ L D R +V YA
Sbjct: 197 --------------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYA 236
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 68/180 (37%), Gaps = 43/180 (23%)
Query: 97 LEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVSSSQGLNLPSPLDSVTVQ 156
L+A P ++S AD LA +V+++ GP GR D +G LP
Sbjct: 95 LKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG-RLPDATKGSDHL 152
Query: 157 RQKFA-AKGLDDHDLVTLVGAHTIGQTDCQFFRYRLYNFTTTGNADPSISQSFLAQLQTL 215
R F A GL D D+V L G HTIG + +G P S +
Sbjct: 153 RDVFGKAMGLTDQDIVALSGGHTIGAAHKE----------RSGFEGPWTSNPLI------ 196
Query: 216 CPKDGDGTKRVALDIDSQNKFDVSFFKNVRDG--KGVLE--SDQRLWEDAATRNIVQNYA 271
FD S+F + G +G+L+ SD+ L D R +V YA
Sbjct: 197 --------------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYA 236
>pdb|1YYD|A Chain A, High Resolution Crystal Structure Of Manganese Peroxidase
pdb|1YYG|A Chain A, Manganese Peroxidase Complexed With Cd(Ii) Inhibitor
pdb|1YZP|A Chain A, Substrate-free Manganese Peroxidase
pdb|1YZR|A Chain A, Manganese Peroxidase-Sm(Iii) Complex
pdb|1MNP|A Chain A, Manganese Peroxidase
pdb|3M5Q|A Chain A, 0.93 A Structure Of Manganese-Bound Manganese Peroxidase
pdb|3M8M|A Chain A, 1.05 A Structure Of Manganese-Free Manganese Peroxidase
Length = 357
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 32/153 (20%)
Query: 50 LLRLHFHDCFV----------QGCDGSVLIAGSSAERSALPNLGLRGFEVIDDAKTQLEA 99
++RL FHD G DGS+L+ + E + N G IDD+ L
Sbjct: 40 VIRLTFHDAIAISRSQGPKAGGGADGSMLLF-PTVEPNFSANNG------IDDSVNNL-- 90
Query: 100 SCP-----GVVSCADILALAARDSVDLSD---GPSWQVPTGRRDGRVSSSQGLNLPSPLD 151
P +S AD++ A +V LS+ P + GR + +++ GL +P P D
Sbjct: 91 -IPFMQKHNTISAADLVQFAG--AVALSNCPGAPRLEFLAGRPNKTIAAVDGL-IPEPQD 146
Query: 152 SVTVQRQKFA-AKGLDDHDLVTLVGAHTIGQTD 183
SVT Q+F A G ++V+L+ +H++ + D
Sbjct: 147 SVTKILQRFEDAGGFTPFEVVSLLASHSVARAD 179
>pdb|1MN1|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant D179n
Length = 357
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 32/153 (20%)
Query: 50 LLRLHFHDCFV----------QGCDGSVLIAGSSAERSALPNLGLRGFEVIDDAKTQLEA 99
++RL FHD G DGS+L+ + E + N G IDD+ L
Sbjct: 40 VIRLTFHDAIAISRSQGPKAGGGADGSMLLF-PTVEPNFSANNG------IDDSVNNL-- 90
Query: 100 SCP-----GVVSCADILALAARDSVDLSD---GPSWQVPTGRRDGRVSSSQGLNLPSPLD 151
P +S AD++ A +V LS+ P + GR + +++ GL +P P D
Sbjct: 91 -IPFMQKHNTISAADLVQFAG--AVALSNCPGAPRLEFLAGRPNKTIAAVDGL-IPEPQD 146
Query: 152 SVTVQRQKFA-AKGLDDHDLVTLVGAHTIGQTD 183
SVT Q+F A G ++V+L+ +H++ + +
Sbjct: 147 SVTKILQRFEDAGGFTPFEVVSLLASHSVARAN 179
>pdb|1MN2|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant E35q,
D179n
Length = 357
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 26/150 (17%)
Query: 50 LLRLHFHDCFV----------QGCDGSVLIAGSSAERSALPNLGLRGFEVIDDAKTQLEA 99
++RL FHD G DGS+L+ + E + N G IDD+ L
Sbjct: 40 VIRLTFHDAIAISRSQGPKAGGGADGSMLLF-PTVEPNFSANNG------IDDSVNNLIP 92
Query: 100 SCP--GVVSCADILALAARDSVDLSD---GPSWQVPTGRRDGRVSSSQGLNLPSPLDSVT 154
+S AD++ A +V LS+ P + GR + +++ GL +P P DSVT
Sbjct: 93 FMQKHNTISAADLVQFAG--AVALSNCPGAPRLEFLAGRPNKTIAAVDGL-IPEPQDSVT 149
Query: 155 VQRQKFA-AKGLDDHDLVTLVGAHTIGQTD 183
Q+F A G ++V+L+ +H++ + +
Sbjct: 150 KILQRFEDAGGFTPFEVVSLLASHSVARAN 179
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 82 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 132
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAHT+G+T +
Sbjct: 133 TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHLK 183
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 82 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 132
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAHT+G+T +
Sbjct: 133 TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHLK 183
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 82 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 132
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAHT+G+T +
Sbjct: 133 TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHLK 183
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 82 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 132
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAHT+G+T +
Sbjct: 133 TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHLK 183
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 82 NAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGP--KIPW--RAGRVD 132
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 133 TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 79 NAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 129
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T+ +
Sbjct: 130 TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTELK 180
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 84 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RAGRVD 134
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 135 TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 82 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 132
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L GAHT+G+T +
Sbjct: 133 TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALSGAHTLGKTHLK 183
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 75 NAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 125
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 126 TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLK 176
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 82 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 132
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 133 TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 84 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 134
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 135 TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 82 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 132
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 133 TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 82 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 132
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 133 TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 82 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 132
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 133 TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 79 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 129
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 130 TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLK 180
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 85 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 135
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 136 TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 186
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 84 NAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEWQGP--KIPW--RCGRVD 134
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 135 TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 82 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 132
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 133 TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 84 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 134
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 135 TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 84 NAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 134
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 135 TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 85 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 135
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 136 TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 186
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 82 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 132
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 133 TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 84 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 134
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 135 TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 84 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 134
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 135 TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 81 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 131
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 132 TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLK 182
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 84 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 134
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 135 TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 82 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 132
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 133 TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 84 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 134
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 135 TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 84 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 134
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 135 TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 105 VSCADILALAARDSVDLSDGPSWQVPTGRRDGRVSSSQGLN-----LPSPLDSVTVQRQK 159
+S D+ +L +V GP ++P R GRV + + LP R
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTPDNGRLPDADKDAGYVRTF 157
Query: 160 FAAKGLDDHDLVTLVGAHTIGQTDCQ 185
F ++D ++V L+GAH +G+T +
Sbjct: 158 FQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 84 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 134
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 135 TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 81 NAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 131
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 132 TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLK 182
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 82 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 132
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 133 TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 82 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 132
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 133 TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 79 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 129
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 130 TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 180
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 84 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 134
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 135 TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 82 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 132
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 133 TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 85 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 135
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 136 TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 186
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 84 NAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 134
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 135 TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 105 VSCADILALAARDSVDLSDGPSWQVPTGRRDGRVSSSQGLN-----LPSPLDSVTVQRQK 159
+S D+ +L +V GP ++P R GRV + + LP R
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTPDNGRLPDADKDAGYVRTF 155
Query: 160 FAAKGLDDHDLVTLVGAHTIGQTDCQ 185
F ++D ++V L+GAH +G+T +
Sbjct: 156 FQRLNMNDREVVALMGAHALGKTHLK 181
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 84 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 134
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 135 TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 105 VSCADILALAARDSVDLSDGPSWQVPTGRRDGRVSSSQGLN-----LPSPLDSVTVQRQK 159
+S D+ +L +V GP ++P R GRV + + LP R
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTPDNGRLPDADKDAGYVRTF 154
Query: 160 FAAKGLDDHDLVTLVGAHTIGQTDCQ 185
F ++D ++V L+GAH +G+T +
Sbjct: 155 FQRLNMNDREVVALMGAHALGKTHLK 180
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 85 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 135
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 136 TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 186
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 79 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 129
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 130 TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 180
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 82 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 132
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 133 TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 79 NAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 129
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 130 TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 180
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 105 VSCADILALAARDSVDLSDGPSWQVPTGRRDGRVSSSQGLN-----LPSPLDSVTVQRQK 159
+S D+ +L +V GP ++P R GRV + + LP R
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTPDNGRLPDADKDAGYVRTF 159
Query: 160 FAAKGLDDHDLVTLVGAHTIGQTDCQ 185
F ++D ++V L+GAH +G+T +
Sbjct: 160 FQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 79 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 129
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 130 TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 180
>pdb|3FMU|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 19/143 (13%)
Query: 51 LRLHFHDCFV-------QGCDGSVLIAGSSAERSALPNLGLRGFEVIDDAKTQLEASCPG 103
LRL FHD G DGS+ IA + E + N G+ E++ K +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSI-IAFDTIETNFPANAGID--EIVSAQKPFVAKHN-- 96
Query: 104 VVSCADILALAARDSVDLSDGPSW-QVP--TGRRDGRVSSSQGLNLPSPLDSVTVQRQKF 160
+S D + A +V +S+ P ++P GR D +S L +P P DSV +
Sbjct: 97 -ISAGDFIQFAG--AVGVSNCPGGVRIPFFLGRPDAVAASPDHL-VPEPFDSVDSILARM 152
Query: 161 AAKGLDDHDLVTLVGAHTIGQTD 183
G ++V+L+ +H+I D
Sbjct: 153 GDAGFSPVEVVSLLASHSIAAAD 175
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 79 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 129
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 130 TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 180
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 79 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 129
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 130 TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 180
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 79 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 129
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 130 TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 180
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 105 VSCADILALAARDSVDLSDGPSWQVPTGRRDGRVSSSQGLN-----LPSPLDSVTVQRQK 159
+S D+ +L +V GP ++P R GRV + + LP R
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTPDNGRLPDADKDAGYVRTF 157
Query: 160 FAAKGLDDHDLVTLVGAHTIGQTDCQ 185
F ++D ++V L+GAH +G+T +
Sbjct: 158 FQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 80 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 130
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 131 TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 181
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 105 VSCADILALAARDSVDLSDGPSWQVPTGRRDGRVSSSQGLN-----LPSPLDSVTVQRQK 159
+S D+ +L +V GP ++P R GRV + + LP R
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTPDNGRLPDADKDAGYVRTF 154
Query: 160 FAAKGLDDHDLVTLVGAHTIGQTDCQ 185
F ++D ++V L+GAH +G+T +
Sbjct: 155 FQRLNMNDREVVALMGAHALGKTHLK 180
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 105 VSCADILALAARDSVDLSDGPSWQVPTGRRDGRVSSSQGLN-----LPSPLDSVTVQRQK 159
+S D+ +L +V GP ++P R GRV + + LP R
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTPDNGRLPDADKDAGYVRTF 154
Query: 160 FAAKGLDDHDLVTLVGAHTIGQTDCQ 185
F ++D ++V L+GAH +G+T +
Sbjct: 155 FQRLNMNDREVVALMGAHALGKTHLK 180
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 82 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 132
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 133 TPEDTTPDNGRLPDYDKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 82 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 132
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L+GAH +G+T +
Sbjct: 133 TPEDTTPDNGRLPDMDKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|2W23|A Chain A, Structure Of Mutant W169y Of Pleurotus Eryngii Versatile
Peroxidase (Vp)
Length = 316
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 19/143 (13%)
Query: 51 LRLHFHDCFV-------QGCDGSVLIAGSSAERSALPNLGLRGFEVIDDAKTQLEASCPG 103
LRL FHD G DGS+ IA + E + N G+ E++ K +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSI-IAFDTIETNFPANAGID--EIVSAQKPFVAKHN-- 96
Query: 104 VVSCADILALAARDSVDLSDGPSW-QVP--TGRRDGRVSSSQGLNLPSPLDSVTVQRQKF 160
+S D + A +V +S+ P ++P GR D +S L +P P DSV +
Sbjct: 97 -ISAGDFIQFAG--AVGVSNCPGGVRIPFFLGRPDAVAASPDHL-VPEPFDSVDSILARM 152
Query: 161 AAKGLDDHDLVTLVGAHTIGQTD 183
G ++V L+ +H+I D
Sbjct: 153 GDAGFSPVEVVYLLASHSIAAAD 175
>pdb|2VKA|A Chain A, Site-directed Mutagenesis Of The Catalytic Tryptophan
Environment In Pleurotus Eryngii Versatile Peroxidase
Length = 317
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 19/143 (13%)
Query: 51 LRLHFHDCFV-------QGCDGSVLIAGSSAERSALPNLGLRGFEVIDDAKTQLEASCPG 103
LRL FHD G DGS+ IA + E + N G+ E++ K +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSI-IAFDTIETNFPANAGID--EIVSAQKPFVAKHN-- 96
Query: 104 VVSCADILALAARDSVDLSDGPSW-QVP--TGRRDGRVSSSQGLNLPSPLDSVTVQRQKF 160
+S D + A +V +S+ P ++P GR D +S L +P P DSV +
Sbjct: 97 -ISAGDFIQFAG--AVGVSNCPGGVRIPFFLGRPDAVAASPDHL-VPEPFDSVDSILARM 152
Query: 161 AAKGLDDHDLVTLVGAHTIGQTD 183
G ++V L+ +H+I D
Sbjct: 153 GDAGFSPVEVVWLLASHSIAAAD 175
>pdb|4FCS|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 19/143 (13%)
Query: 51 LRLHFHDCFV-------QGCDGSVLIAGSSAERSALPNLGLRGFEVIDDAKTQLEASCPG 103
LRL FHD G DGS+ IA + E + N G+ E++ K +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSI-IAFDTIETNFPANAGID--EIVSAQKPFVAKHN-- 96
Query: 104 VVSCADILALAARDSVDLSDGPSW-QVP--TGRRDGRVSSSQGLNLPSPLDSVTVQRQKF 160
+S D + A +V +S+ P ++P GR D +S L +P P DSV +
Sbjct: 97 -ISAGDFIQFAG--AVGVSNCPGGVRIPFFLGRPDAVAASPDHL-VPEPFDSVDSILARM 152
Query: 161 AAKGLDDHDLVTLVGAHTIGQTD 183
G ++V L+ +H+I D
Sbjct: 153 GDAGFSPVEVVWLLASHSIAAAD 175
>pdb|3FKG|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 19/143 (13%)
Query: 51 LRLHFHDCFV-------QGCDGSVLIAGSSAERSALPNLGLRGFEVIDDAKTQLEASCPG 103
LRL FHD G DGS+ IA + E + N G+ E++ K +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSI-IAFDTIETNFPANAGID--EIVSAQKPFVAKHN-- 96
Query: 104 VVSCADILALAARDSVDLSDGPSW-QVP--TGRRDGRVSSSQGLNLPSPLDSVTVQRQKF 160
+S D + A +V +S+ P ++P GR D +S L +P P DSV +
Sbjct: 97 -ISAGDFIQFAG--AVGVSNCPGGVRIPFFLGRPDAVAASPDHL-VPEPFDSVDSILARM 152
Query: 161 AAKGLDDHDLVTLVGAHTIGQTD 183
G ++V L+ +H+I D
Sbjct: 153 GDAGFSPVEVVWLLASHSIAAAD 175
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 15/111 (13%)
Query: 81 NLGLR-GFEVIDDAKTQLEASCPGVVSCADILALAARDSVDLSDGPSWQVPTGRRDGRVS 139
N GL+ GF+ ++ + +S D+ +L +V GP ++P R GRV
Sbjct: 79 NAGLQNGFKFLEPIHKEFPW-----ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVD 129
Query: 140 SSQGLN-----LPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTIGQTDCQ 185
+ + LP R F ++D ++V L GAH +G+T +
Sbjct: 130 TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALKGAHALGKTHLK 180
>pdb|4FDQ|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 19/143 (13%)
Query: 51 LRLHFHDCFV-------QGCDGSVLIAGSSAERSALPNLGLRGFEVIDDAKTQLEASCPG 103
LRL FHD G DGS+ IA + E + N G+ E++ K +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSI-IAFDTIETNFPANAGID--EIVSAQKPFVAKHN-- 96
Query: 104 VVSCADILALAARDSVDLSDGPSW-QVP--TGRRDGRVSSSQGLNLPSPLDSVTVQRQKF 160
+S D + A +V +S+ P ++P GR D +S L +P P DSV +
Sbjct: 97 -ISAGDFIQFAG--AVGVSNCPGGVRIPFFLGRPDAVAASPDHL-VPGPFDSVDSILARM 152
Query: 161 AAKGLDDHDLVTLVGAHTIGQTD 183
G ++V L+ +H+I D
Sbjct: 153 GDAGFSPVEVVWLLASHSIAAAD 175
>pdb|4G05|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 317
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 19/143 (13%)
Query: 51 LRLHFHDCFV-------QGCDGSVLIAGSSAERSALPNLGLRGFEVIDDAKTQLEASCPG 103
LRL FHD G DGS+ IA + E + N G+ E++ K +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSI-IAFDTIETNFPANAGID--EIVSAQKPFVAKHN-- 96
Query: 104 VVSCADILALAARDSVDLSDGPSW-QVP--TGRRDGRVSSSQGLNLPSPLDSVTVQRQKF 160
+S D + A +V +S+ P ++P GR D +S L +P P DSV +
Sbjct: 97 -ISAGDFIQFAG--AVGVSNCPGGVRIPFFLGRPDAVAASPDHL-VPGPFDSVDSILARM 152
Query: 161 AAKGLDDHDLVTLVGAHTIGQTD 183
G ++V L+ +H+I D
Sbjct: 153 GDAGFSPVEVVWLLASHSIAAAD 175
>pdb|3FJW|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
pdb|3FJW|B Chain B, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 19/143 (13%)
Query: 51 LRLHFHDCFV-------QGCDGSVLIAGSSAERSALPNLGLRGFEVIDDAKTQLEASCPG 103
LRL FHD G DGS+ IA + E + N G+ E++ K +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSI-IAFDTIETNFPANAGID--EIVSAQKPFVAKHN-- 96
Query: 104 VVSCADILALAARDSVDLSDGPSW-QVP--TGRRDGRVSSSQGLNLPSPLDSVTVQRQKF 160
+S D + A +V +S+ P ++P GR D +S L +P P DSV +
Sbjct: 97 -ISAGDFIQFAG--AVGVSNCPGGVRIPFFLGRPDAVAASPDHL-VPEPFDSVDSILARM 152
Query: 161 AAKGLDDHDLVTLVGAHTIGQTD 183
G ++V L+ +H+I D
Sbjct: 153 GDAGFSPVEVVWLLASHSIAAAD 175
>pdb|3Q3U|A Chain A, Trametes Cervina Lignin Peroxidase
Length = 338
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 15/117 (12%)
Query: 68 LIAGSSAERSALPNLGLR----GFEVIDDAKTQLEASCPGVVSCADILALA-ARDSVDLS 122
++A S E + +PN GL GF A VS D + A A + + +
Sbjct: 72 ILAFSDIETAFIPNFGLEFTTEGFIPFALAHG---------VSFGDFVQFAGAVGAANCA 122
Query: 123 DGPSWQVPTGRRDGRVSSSQGLNLPSPLDSVTVQRQKFAAKGLDDHDLVTLVGAHTI 179
GP Q GR + S GL +P P DS + A G ++V L+ +H+I
Sbjct: 123 GGPRLQFLAGRSNISQPSPDGL-VPDPTDSADKILARMADIGFSPTEVVHLLASHSI 178
>pdb|2BOQ|A Chain A, Crystal Structure Of Versatile Peroxidase
Length = 331
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 19/143 (13%)
Query: 51 LRLHFHDCFV-------QGCDGSVLIAGSSAERSALPNLGLRGFEVIDDAKTQLEASCPG 103
LRL FHD G DGS+ IA + E + N G+ E++ K +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSI-IAFDTIETNFPANAGID--EIVSAQKPFVAKHN-- 96
Query: 104 VVSCADILALAARDSVDLSDGPSW-QVP--TGRRDGRVSSSQGLNLPSPLDSVTVQRQKF 160
+S D + A +V +S+ P ++P GR D +S L +P P DSV +
Sbjct: 97 -ISAGDFIQFAG--AVGVSNCPGGVRIPFFLGRPDAVAASPDHL-VPEPFDSVDSILARM 152
Query: 161 AAKGLDDHDLVTLVGAHTIGQTD 183
G ++V L+ +H+I D
Sbjct: 153 GDAGFSPVEVVWLLASHSIAAAD 175
>pdb|3FM1|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 19/143 (13%)
Query: 51 LRLHFHDCFV-------QGCDGSVLIAGSSAERSALPNLGLRGFEVIDDAKTQLEASCPG 103
LRL FHD G DGS+ IA + E + N G+ E++ K +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSI-IAFDTIETNFPANAGID--EIVSAQKPFVAKHN-- 96
Query: 104 VVSCADILALAARDSVDLSDGPSW-QVP--TGRRDGRVSSSQGLNLPSPLDSVTVQRQKF 160
+S D + A +V +S+ P ++P GR D +S L +P P DSV +
Sbjct: 97 -ISAGDFIQFAG--AVGVSNCPGGVRIPFFLGRPDAVAASPDHL-VPEPFDSVDSILARM 152
Query: 161 AAKGLDDHDLVTLVGAHTIGQTD 183
G ++V L+ +H+I D
Sbjct: 153 GDAGFSPVEVVWLLASHSIAAAD 175
>pdb|4FCN|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 319
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 19/143 (13%)
Query: 51 LRLHFHDCFV-------QGCDGSVLIAGSSAERSALPNLGLRGFEVIDDAKTQLEASCPG 103
LRL FHD G DGS+ IA + E + N G+ E++ K +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSI-IAFDTIETNFPANAGID--EIVSAQKPFVAKHN-- 96
Query: 104 VVSCADILALAARDSVDLSDGPSW-QVP--TGRRDGRVSSSQGLNLPSPLDSVTVQRQKF 160
+S D + A +V +S+ P ++P GR D +S L +P P DSV +
Sbjct: 97 -ISAGDFIQFAG--AVGVSNCPGGVRIPFFLGRPDAVAASPDHL-VPGPFDSVDSILARM 152
Query: 161 AAKGLDDHDLVTLVGAHTIGQTD 183
G ++V L+ +H+I D
Sbjct: 153 GDAGFSPVEVVWLLASHSIAAAD 175
>pdb|3FM6|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 19/143 (13%)
Query: 51 LRLHFHDCFV-------QGCDGSVLIAGSSAERSALPNLGLRGFEVIDDAKTQLEASCPG 103
LRL FHD G DGS+ IA + E + N G+ E++ K +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSI-IAFDTIETNFPANAGID--EIVSAQKPFVAKHN-- 96
Query: 104 VVSCADILALAARDSVDLSDGPSW-QVP--TGRRDGRVSSSQGLNLPSPLDSVTVQRQKF 160
+S D + A +V +S+ P ++P GR D +S L +P P DSV +
Sbjct: 97 -ISAGDFIQFAG--AVGVSNCPGGVRIPFFLGRPDAVAASPDHL-VPEPQDSVDSILARM 152
Query: 161 AAKGLDDHDLVTLVGAHTIGQTD 183
G ++V L+ +H+I D
Sbjct: 153 GDAGFSPVEVVWLLASHSIAAAD 175
>pdb|3FM4|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 19/139 (13%)
Query: 51 LRLHFHDCFV-------QGCDGSVLIAGSSAERSALPNLGLRGFEVIDDAKTQLEASCPG 103
LRL FHD G DGS+ IA + E + N G+ E++ K +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSI-IAFDTIETNFPANAGID--EIVSAQKPFVAKHN-- 96
Query: 104 VVSCADILALAARDSVDLSDGPSW-QVP--TGRRDGRVSSSQGLNLPSPLDSVTVQRQKF 160
+S D + A +V +S+ P ++P GR D +S L +P P DSV +
Sbjct: 97 -ISAGDFIQFAG--AVGVSNCPGGVRIPFFLGRPDAVAASPDHL-VPEPFDSVDSILARM 152
Query: 161 AAKGLDDHDLVTLVGAHTI 179
G ++V L+ +H+I
Sbjct: 153 GDAGFSPVEVVWLLASHSI 171
>pdb|1H6G|A Chain A, Alpha-Catenin M-Domain
pdb|1H6G|B Chain B, Alpha-Catenin M-Domain
Length = 256
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Query: 86 GFEVIDDAKTQLEASCPGVVSCADILALAAR 116
G +++ + +QLEA CP V++ A LALAA+
Sbjct: 70 GVKLVRXSASQLEALCPQVINAA--LALAAK 98
>pdb|1L7C|A Chain A, Alpha-Catenin Fragment, Residues 385-651
pdb|1L7C|B Chain B, Alpha-Catenin Fragment, Residues 385-651
pdb|1L7C|C Chain C, Alpha-Catenin Fragment, Residues 385-651
Length = 269
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 85 RGFEVIDDAKTQLEASCPGVVSCADILALAAR 116
G +++ + +QLEA CP V++ A LALAA+
Sbjct: 63 EGVKLVRXSASQLEALCPQVINAA--LALAAK 92
>pdb|1LY8|A Chain A, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
pdb|1LY8|B Chain B, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
Length = 343
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 105 VSCADILALAARDSVDLSDG-PSWQVPTGRRDGRVSSSQGLNLPSPLDSVTVQRQKFAAK 163
VS D++ AA + G P + TGR + S L +P P ++VT +F
Sbjct: 111 VSFGDLIQFAAAVGMSNCPGSPRLEFLTGRSNSSQPSPPSL-IPGPGNTVTAILDRFGDA 169
Query: 164 GLDDHDLVTLVGAHTIGQTD 183
G ++V L+ AH++ +
Sbjct: 170 GFSPDEVVDLLAAHSLASQE 189
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 47 AAGLLRLHFHDCFVQGCDGSVLIAGSSAERSALPNLGLRGFEVIDDAKTQLEASCPG 103
A LR+HF+DC QG + VL+ GS + N +++ + CPG
Sbjct: 21 AGKTLRIHFNDC-GQGDETVVLLHGSGPGATGWANFSRNIDPLVEAGYRVILLDCPG 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,184,994
Number of Sequences: 62578
Number of extensions: 371440
Number of successful extensions: 844
Number of sequences better than 100.0: 120
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 716
Number of HSP's gapped (non-prelim): 132
length of query: 314
length of database: 14,973,337
effective HSP length: 99
effective length of query: 215
effective length of database: 8,778,115
effective search space: 1887294725
effective search space used: 1887294725
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)