BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045532
(173 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KV9|A Chain A, Structure At 1.9 A Resolution Of A Quinohemoprotein
Alcohol Dehydrogenase From Pseudomonas Putida Hk5
Length = 668
Score = 33.5 bits (75), Expect = 0.055, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 6 SRHDACMGSMAIKFAEKTKNPFLPFPHPRLAKALFSF----YLKAGGG 49
S +DA G +A +F +P LP+ HP L +A ++ Y K GGG
Sbjct: 181 SAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGG 228
>pdb|2OCA|A Chain A, The Crystal Structure Of T4 Uvsw
Length = 510
Score = 33.1 bits (74), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 25/58 (43%)
Query: 6 SRHDACMGSMAIKFAEKTKNPFLPFPHPRLAKALFSFYLKAGGGIYRCVHTAKMSRRN 63
S+ + + +AIK A+K +N F+ F H KA+F +Y RN
Sbjct: 330 SKRNKWIAKLAIKLAQKDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRN 387
>pdb|1YUY|A Chain A, Hepatitis C Virus Ns5b Rna-Dependent Rna Polymerase
Genotype 2a
pdb|1YV2|A Chain A, Hepatitis C Virus Ns5b Rna-dependent Rna Polymerase
Genotype 2a
pdb|1YVX|A Chain A, Hepatitis C Virus Rna Polymerase Genotype 2a In Complex
With Non- Nucleoside Analogue Inhibitor
pdb|1YVZ|A Chain A, Hepatitis C Virus Rna Polymerase Genotype 2a In Complex
With Non- Nucleoside Analogue Inhibitor
Length = 570
Score = 30.0 bits (66), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 10 ACMGSMAIKFAEKTKNPFLPFPHPRLAKALFSFYLKAGGG-IYRCVHTAK 58
A G +A KTK P P RL F + AGGG IY V A+
Sbjct: 519 AVCGRYLFNWAVKTKLKLTPLPEARLLDLSSWFTVGAGGGDIYHSVSRAR 568
>pdb|4ADP|A Chain A, Hcv-J6 Ns5b Polymerase V405i Mutant
Length = 579
Score = 30.0 bits (66), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 10 ACMGSMAIKFAEKTKNPFLPFPHPRLAKALFSFYLKAGGG-IYRCVHTAK 58
A G +A KTK P P RL F + AGGG IY V A+
Sbjct: 521 AVCGRYLFNWAVKTKLKLTPLPEARLLDLSSWFTVGAGGGDIYHSVSRAR 570
>pdb|4E76|A Chain A, Apo Crystal Structure Of Hcv Ns5b Genotype 2a Jfh-1
Isolate With Beta Hairpin Loop Deletion
pdb|4E78|A Chain A, Crystal Structure Of A Product State Assembly Of Hcv Ns5b
Genotype 2a Jfh-1 Isolate With Beta Hairpin Loop
Deletion Bound To Primer- Template Rna With 3'-Dg
pdb|4E7A|A Chain A, Crystal Structure Of A Product State Assembly Of Hcv Ns5b
Genotype 2a Jfh-1 Isolate With Beta Hairpin Deletion
Bound To Primer-Template Rna With A 2',3'-Ddc
Length = 572
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 10 ACMGSMAIKFAEKTKNPFLPFPHPRLAKALFSFYLKAGGG-IYRCVHTAK 58
A G +A KTK P P RL F + AGGG I+ V A+
Sbjct: 513 AVCGRYLFNWAVKTKLKLTPLPEARLLDLSSWFTVGAGGGDIFHSVSRAR 562
>pdb|4AEP|A Chain A, Hcv-Jfh1 Ns5b Polymerase Structure At 1.8 Angstrom
pdb|4AEX|A Chain A, Hcv-Jfh1 Ns5b Polymerase Structure At 2.4 Angstrom In A
Primitive Orthorhombic Space Group
pdb|4AEX|B Chain B, Hcv-Jfh1 Ns5b Polymerase Structure At 2.4 Angstrom In A
Primitive Orthorhombic Space Group
Length = 579
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 10 ACMGSMAIKFAEKTKNPFLPFPHPRLAKALFSFYLKAGGG-IYRCVHTAK 58
A G +A KTK P P RL F + AGGG I+ V A+
Sbjct: 521 AVCGRYLFNWAVKTKLKLTPLPEARLLDLSSWFTVGAGGGDIFHSVSRAR 570
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 11/45 (24%)
Query: 117 SPEATSMVLVGCPRCLMY-------VMLSE----DDPKCPKCKST 150
+PE S +GC RC + ++ SE D+ CP+C+ST
Sbjct: 15 TPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,191,151
Number of Sequences: 62578
Number of extensions: 136475
Number of successful extensions: 260
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 258
Number of HSP's gapped (non-prelim): 8
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)