BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045532
         (173 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8GR64|QHED_PSEPU Quinohemoprotein alcohol dehydrogenase ADH IIB OS=Pseudomonas
           putida GN=qbdA PE=1 SV=1
          Length = 690

 Score = 33.5 bits (75), Expect = 0.63,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 6   SRHDACMGSMAIKFAEKTKNPFLPFPHPRLAKALFSF----YLKAGGG 49
           S +DA  G +A +F     +P LP+ HP L +A  ++    Y K GGG
Sbjct: 203 SAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGG 250


>sp|Q9H4Q3|PRD13_HUMAN PR domain zinc finger protein 13 OS=Homo sapiens GN=PRDM13 PE=2
           SV=2
          Length = 707

 Score = 33.5 bits (75), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 5/96 (5%)

Query: 30  FPHPRLAKALFSFY-LKAGGGIYRCVHTAKMSRRNGNVPKLDLKLNLSPPRGNPHMESPS 88
           F +P   KA   F+ + +GGG    +H  + + R G VP  D  L LSP    P   +PS
Sbjct: 146 FRYPNSLKAHLRFHCVFSGGGGGAFLHH-EHAARQGAVPAAD-GLGLSPKPPAPDFAAPS 203

Query: 89  QSATVS--PTSPPSSCVSSENQEDMLQYSNSPEATS 122
           Q+ T+   P  PP        +    + S++P ATS
Sbjct: 204 QAGTLRPHPLGPPPVQACGAREGIKREASSAPSATS 239


>sp|Q06502|RPOA_LDVC Replicase polyprotein 1ab OS=Lactate dehydrogenase elevating virus
            (strain C) GN=rep PE=3 SV=2
          Length = 3637

 Score = 30.0 bits (66), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 60   SRRNGNVPKLDLKLNLSPPRGNPHME 85
            S R G+ P LDL   L P RGNP+ +
Sbjct: 2352 SIRRGDAPSLDLPYKLHPVRGNPYRD 2377


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.130    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,798,787
Number of Sequences: 539616
Number of extensions: 2711920
Number of successful extensions: 16330
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 16158
Number of HSP's gapped (non-prelim): 199
length of query: 173
length of database: 191,569,459
effective HSP length: 109
effective length of query: 64
effective length of database: 132,751,315
effective search space: 8496084160
effective search space used: 8496084160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)