Query 045532
Match_columns 173
No_of_seqs 117 out of 132
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 04:42:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045532.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045532hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wr7_A NEDD4-2; all-beta, liga 97.6 3.2E-05 1.1E-09 48.6 2.5 36 25-64 2-38 (41)
2 2law_A Yorkie homolog; YAP, SM 97.5 4.6E-05 1.6E-09 47.2 2.7 32 29-64 4-36 (38)
3 2djy_A SMAD ubiquitination reg 97.4 0.0001 3.5E-09 46.9 3.5 36 26-65 2-38 (42)
4 1i5h_W Rnedd4, ubiquitin ligas 97.4 9E-05 3.1E-09 48.7 3.2 36 27-66 7-43 (50)
5 1wr3_A Ubiquitin-protein ligas 97.4 7.3E-05 2.5E-09 45.4 2.5 31 30-64 3-34 (36)
6 1wr4_A Ubiquitin-protein ligas 97.4 8.3E-05 2.8E-09 44.8 2.6 32 29-64 2-34 (36)
7 1e0m_A Wwprototype; SH3 protot 97.4 9.9E-05 3.4E-09 44.8 2.8 32 30-65 2-34 (37)
8 2dmv_A Itchy homolog E3 ubiqui 97.3 0.00013 4.3E-09 46.3 2.9 33 29-65 5-38 (43)
9 2ysg_A Syntaxin-binding protei 97.3 0.00013 4.5E-09 45.6 2.9 32 29-64 5-37 (40)
10 2kyk_A E3 ubiquitin-protein li 97.3 0.00012 4E-09 45.4 2.5 31 30-64 5-36 (39)
11 2zaj_A Membrane-associated gua 97.3 0.00021 7.3E-09 47.0 3.8 36 27-66 9-45 (49)
12 2ysf_A E3 ubiquitin-protein li 97.3 0.00014 4.9E-09 45.5 2.8 33 28-64 4-37 (40)
13 2l4j_A YES-associated protein 97.3 0.00021 7.1E-09 46.2 3.3 33 28-64 8-41 (46)
14 2kpz_A E3 ubiquitin-protein li 97.2 0.00017 5.7E-09 47.0 2.5 34 28-65 9-43 (49)
15 2jmf_A E3 ubiquitin-protein li 97.2 0.00031 1E-08 46.8 3.7 36 26-65 13-49 (53)
16 2ysh_A GAS-7, growth-arrest-sp 97.2 0.00023 7.8E-09 44.1 2.9 33 29-65 5-38 (40)
17 2ez5_W Dnedd4, E3 ubiquitin-pr 97.2 0.00024 8.2E-09 45.8 3.0 34 28-65 7-41 (46)
18 1ymz_A CC45; artificial protei 97.1 0.00028 9.4E-09 44.4 2.7 33 29-65 6-39 (43)
19 2ysb_A Salvador homolog 1 prot 97.0 0.00047 1.6E-08 45.2 2.8 34 28-65 8-42 (49)
20 2yse_A Membrane-associated gua 96.9 0.00042 1.4E-08 47.5 2.5 34 27-64 9-43 (60)
21 2jv4_A Peptidyl-prolyl CIS/tra 96.8 0.0007 2.4E-08 45.2 3.0 36 29-67 5-41 (54)
22 2dwv_A Salvador homolog 1 prot 96.8 0.0012 4E-08 43.3 3.6 34 28-65 10-44 (49)
23 1wmv_A WWOX, WW domain contain 96.7 0.0013 4.3E-08 43.9 3.2 33 29-65 9-42 (54)
24 2ysd_A Membrane-associated gua 96.6 0.0017 5.7E-08 43.9 3.5 35 27-65 10-45 (57)
25 1jmq_A YAP65, 65 kDa YES-assoc 96.4 0.0017 5.8E-08 41.3 2.2 37 29-69 6-43 (46)
26 1tk7_A CG4244-PB; WW domain, n 96.0 0.0036 1.2E-07 44.6 2.8 35 29-67 10-45 (88)
27 2jx8_A Hpcif1, phosphorylated 96.0 0.002 7E-08 42.7 1.4 38 30-70 9-47 (52)
28 2ysc_A Amyloid beta A4 precurs 96.0 0.0061 2.1E-07 38.3 3.3 34 27-64 4-37 (39)
29 2kxq_A E3 ubiquitin-protein li 95.8 0.0076 2.6E-07 43.1 3.6 35 28-66 6-41 (90)
30 2ho2_A Fe65 protein, amyloid b 95.7 0.0059 2E-07 38.2 2.3 30 31-65 3-33 (38)
31 1tk7_A CG4244-PB; WW domain, n 95.1 0.011 3.8E-07 42.1 2.6 32 29-64 54-86 (88)
32 2kxq_A E3 ubiquitin-protein li 95.0 0.013 4.4E-07 41.9 2.7 32 30-65 54-86 (90)
33 3tc5_A Peptidyl-prolyl CIS-tra 94.7 0.013 4.5E-07 46.1 2.1 36 29-67 7-43 (166)
34 2e45_A Fe65 protein, amyloid b 94.5 0.035 1.2E-06 37.8 3.6 33 28-65 16-49 (55)
35 3l4h_A E3 ubiquitin-protein li 94.2 0.034 1.2E-06 42.2 3.3 33 28-64 69-102 (109)
36 2l5f_A PRE-mRNA-processing fac 92.6 0.051 1.7E-06 39.0 1.9 35 28-66 8-43 (92)
37 2ysi_A Transcription elongatio 91.2 0.18 6.2E-06 31.4 3.1 32 30-65 6-38 (40)
38 1o6w_A PRP40, PRE-mRNA process 90.8 0.077 2.6E-06 36.1 1.2 31 31-65 40-71 (75)
39 3olm_A E3 ubiquitin-protein li 87.0 0.26 9E-06 44.0 2.2 34 28-65 5-39 (429)
40 1ywi_A Formin-binding protein 85.8 0.32 1.1E-05 30.3 1.5 30 31-64 9-39 (41)
41 1ryq_A DNA-directed RNA polyme 84.9 0.4 1.4E-05 33.8 1.8 22 126-151 12-33 (69)
42 1e0n_A Hypothetical protein; Y 84.8 0.52 1.8E-05 27.2 2.0 24 35-63 2-26 (27)
43 1eg3_A Dystrophin; EF-hand lik 84.6 0.17 5.9E-06 42.8 -0.2 35 27-65 7-42 (261)
44 2jxw_A WW domain-binding prote 83.3 0.67 2.3E-05 31.7 2.4 31 30-64 42-73 (75)
45 1e0l_A Formin binding protein; 82.2 0.87 3E-05 27.6 2.4 31 31-65 3-34 (37)
46 1yw5_A Peptidyl prolyl CIS/tra 77.2 1.6 5.6E-05 33.9 3.1 33 30-65 6-39 (177)
47 2l5f_A PRE-mRNA-processing fac 76.3 0.93 3.2E-05 32.3 1.3 30 31-64 52-82 (92)
48 3p8b_A DNA-directed RNA polyme 76.0 1 3.5E-05 32.6 1.5 29 119-151 17-45 (81)
49 1o6w_A PRP40, PRE-mRNA process 71.0 1.8 6.1E-05 29.2 1.6 27 35-65 3-30 (75)
50 2jxw_A WW domain-binding prote 60.4 4.4 0.00015 27.5 2.0 28 34-65 5-33 (75)
51 1gh9_A 8.3 kDa protein (gene M 59.5 1.9 6.6E-05 30.1 0.0 27 124-152 3-31 (71)
52 3lpe_B DNA-directed RNA polyme 55.6 4 0.00014 27.6 1.1 21 126-150 2-22 (59)
53 2kdx_A HYPA, hydrogenase/ureas 52.0 9.1 0.00031 27.9 2.6 35 123-158 71-106 (119)
54 1twf_L ABC10-alpha, DNA-direct 49.2 9.2 0.00032 26.5 2.1 32 122-153 25-57 (70)
55 2dk1_A WW domain-binding prote 46.7 11 0.00037 24.4 2.0 27 35-65 8-35 (50)
56 8tfv_A Protein (thanatin); bac 42.9 8.9 0.00031 21.2 1.0 9 50-58 9-17 (21)
57 2apo_B Ribosome biogenesis pro 42.6 9.3 0.00032 26.0 1.3 24 124-151 5-28 (60)
58 1v54_F VI, cytochrome C oxidas 42.0 22 0.00077 26.0 3.4 30 124-154 56-92 (98)
59 2gmg_A Hypothetical protein PF 40.5 10 0.00035 28.5 1.3 28 123-151 65-94 (105)
60 2aus_D NOP10, ribosome biogene 39.1 13 0.00046 25.3 1.6 24 124-151 4-27 (60)
61 1zfo_A LAsp-1; LIM domain, zin 38.3 12 0.00041 21.5 1.1 11 141-151 3-13 (31)
62 3vxv_A Methyl-CPG-binding doma 34.7 20 0.00069 24.5 2.0 14 30-46 4-17 (69)
63 3a43_A HYPD, hydrogenase nicke 33.3 16 0.00055 27.7 1.4 29 123-151 68-117 (139)
64 2y69_F Cytochrome C oxidase su 33.0 32 0.0011 26.6 3.1 32 124-156 87-125 (129)
65 2egp_A Tripartite motif-contai 32.6 12 0.00041 24.0 0.6 29 128-156 35-68 (79)
66 1s4c_A Protein HI0227; double- 31.5 13 0.00043 28.3 0.5 16 35-50 61-79 (155)
67 1weo_A Cellulose synthase, cat 27.2 13 0.00045 27.5 0.0 28 124-151 34-68 (93)
68 3h0g_L DNA-directed RNA polyme 26.8 25 0.00087 24.0 1.4 31 123-153 19-50 (63)
69 2ecv_A Tripartite motif-contai 25.2 12 0.00042 24.1 -0.5 27 128-154 42-72 (85)
70 2lcq_A Putative toxin VAPC6; P 25.1 17 0.00057 27.5 0.2 28 124-151 131-158 (165)
71 1bor_A Transcription factor PM 24.9 25 0.00084 21.8 1.0 22 128-154 29-50 (56)
72 2ky8_A Methyl-CPG-binding doma 23.7 40 0.0014 23.2 2.0 14 31-47 12-25 (72)
73 2ect_A Ring finger protein 126 22.3 24 0.00082 22.7 0.6 25 128-154 41-65 (78)
74 1yuz_A Nigerythrin; rubrythrin 21.3 51 0.0017 26.3 2.4 28 121-150 167-195 (202)
75 1iym_A EL5; ring-H2 finger, ub 20.8 45 0.0015 19.8 1.6 24 128-153 32-55 (55)
76 1jm7_A BRCA1, breast cancer ty 20.6 15 0.00051 25.2 -0.8 28 128-155 44-72 (112)
77 2i5o_A DNA polymerase ETA; zin 20.2 35 0.0012 21.1 0.9 13 142-154 10-22 (39)
No 1
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=97.59 E-value=3.2e-05 Score=48.61 Aligned_cols=36 Identities=11% Similarity=-0.037 Sum_probs=28.5
Q ss_pred CCCCCCCCCcchhccceeeeeccccE-EEeeccCcccCCCC
Q 045532 25 NPFLPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNG 64 (173)
Q Consensus 25 ~~~l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~ 64 (173)
++..+.+||.+|| +++| .+|++ |+|..|.+..|..+
T Consensus 2 ~p~~~~~LP~gWe---~~~~-~~G~~Yy~n~~t~~t~We~P 38 (41)
T 1wr7_A 2 SPGIQSFLPPGWE---MRIA-PNGRPFFIDHNTKTTTWEDP 38 (41)
T ss_dssp TTCCCCSSCTTEE---EEEC-TTSCEEEEETTTTEEESSCG
T ss_pred CCCccCCCCCCcE---EEEc-CCCCEEEEECCCCCeecCCC
Confidence 3556789999998 8889 68999 77988877776554
No 2
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=97.54 E-value=4.6e-05 Score=47.23 Aligned_cols=32 Identities=19% Similarity=0.079 Sum_probs=25.3
Q ss_pred CCCCCcchhccceeeeeccccE-EEeeccCcccCCCC
Q 045532 29 PFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNG 64 (173)
Q Consensus 29 ~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~ 64 (173)
+.+||.+|| +++| .+|++ |+|..|.+.+|..+
T Consensus 4 ~~~LP~gWe---~~~~-~~G~~Yy~nh~t~~ttW~~P 36 (38)
T 2law_A 4 EGPLPDGWE---QAMT-QDGEIYYINHKNKTTSWLDP 36 (38)
T ss_dssp -CCCSSSCC---EEEE-TTTEEEEEETTTTEEESSCT
T ss_pred cCCCCCCcE---EEEC-CCCCEEEEECCCCCEeCCCC
Confidence 358999998 8889 89999 77888876766554
No 3
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A
Probab=97.45 E-value=0.0001 Score=46.86 Aligned_cols=36 Identities=14% Similarity=0.044 Sum_probs=28.3
Q ss_pred CCCCCCCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532 26 PFLPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN 65 (173)
Q Consensus 26 ~~l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~ 65 (173)
|....+||.+|| ++.| .+|++ |+|..|.+..|..+.
T Consensus 2 p~~~~~LP~GWe---~~~~-~~G~~Yy~nh~t~~ttW~~Pr 38 (42)
T 2djy_A 2 PLGSGPLPPGWE---IRNT-ATGRVYFVDHNNRTTQFTDPR 38 (42)
T ss_dssp CCCCSCCCSSEE---EEEC-SSSCEEEEETTTTEEESSCTT
T ss_pred CCCcCCCCcCcE---EEEC-CCCCEEEEECCCCCEeCCCCC
Confidence 445668999998 7888 89999 778888777776654
No 4
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=97.44 E-value=9e-05 Score=48.70 Aligned_cols=36 Identities=11% Similarity=-0.027 Sum_probs=28.7
Q ss_pred CCCCCCCcchhccceeeeeccccE-EEeeccCcccCCCCCC
Q 045532 27 FLPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGNV 66 (173)
Q Consensus 27 ~l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~~ 66 (173)
....+||.+|| +++| .+|++ |+|..|.+..|..+..
T Consensus 7 ~~~~~LP~gWe---~~~~-~~Gr~Yy~nh~t~~T~We~Pr~ 43 (50)
T 1i5h_W 7 NDLGPLPPGWE---ERTH-TDGRVFFINHNIKKTQWEDPRM 43 (50)
T ss_dssp SCCSSCSTTEE---EEEC-TTSCEEEEETTTTEEESSCTTT
T ss_pred ccCCCCCcCcE---EEEc-CCCCEEEEECCCCCEEeeCCCC
Confidence 45568999998 8889 89999 7788887777776643
No 5
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=97.42 E-value=7.3e-05 Score=45.39 Aligned_cols=31 Identities=13% Similarity=-0.057 Sum_probs=25.2
Q ss_pred CCCCcchhccceeeeeccccE-EEeeccCcccCCCC
Q 045532 30 FPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNG 64 (173)
Q Consensus 30 ~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~ 64 (173)
.+||.+|| ++.| .+|++ |+|..|.+..|..+
T Consensus 3 ~~LP~GWe---~~~d-~~G~~Yy~n~~t~~t~We~P 34 (36)
T 1wr3_A 3 PPLPPGWE---EKVD-NLGRTYYVNHNNRSTQWHRP 34 (36)
T ss_dssp SCSCTTEE---EEEC-SSSCEEEEETTTCCEESSCS
T ss_pred CCCCCCCE---EEEC-CCCCEEEEECCCCCEeeeCc
Confidence 47999998 8889 79999 77988877766654
No 6
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=97.41 E-value=8.3e-05 Score=44.77 Aligned_cols=32 Identities=13% Similarity=-0.081 Sum_probs=25.3
Q ss_pred CCCCCcchhccceeeeeccccE-EEeeccCcccCCCC
Q 045532 29 PFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNG 64 (173)
Q Consensus 29 ~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~ 64 (173)
+.+||.+|| ++.| .+|++ |+|..|.+..|..+
T Consensus 2 ~~~LP~gWe---~~~d-~~g~~Yy~n~~t~~t~W~~P 34 (36)
T 1wr4_A 2 SPGLPSGWE---ERKD-AKGRTYYVNHNNRTTTWTRP 34 (36)
T ss_dssp CTTCCTTEE---EEEC-SSSCEEEEETTTTEEESSCC
T ss_pred CCCCCCCCE---EEEC-CCCCEEEEECCCCCEeCcCC
Confidence 358999998 8889 59999 77888876666654
No 7
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=97.39 E-value=9.9e-05 Score=44.78 Aligned_cols=32 Identities=13% Similarity=0.091 Sum_probs=25.9
Q ss_pred CCCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532 30 FPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN 65 (173)
Q Consensus 30 ~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~ 65 (173)
.+||.+|| .+.| .+|++ |+|..|.+..|..+.
T Consensus 2 ~~LP~gW~---~~~~-~~G~~Yy~n~~t~~t~W~~P~ 34 (37)
T 1e0m_A 2 MGLPPGWD---EYKT-HNGKTYYYNHNTKTSTWTDPR 34 (37)
T ss_dssp CCSCTTEE---EEEC-SSCCEEEEETTTTEEESSCTT
T ss_pred CCCCCCcE---EEEC-CCCCEEEEECCCCCeeeeCcC
Confidence 47999998 7888 68999 779988777776654
No 8
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.34 E-value=0.00013 Score=46.25 Aligned_cols=33 Identities=9% Similarity=-0.074 Sum_probs=26.9
Q ss_pred CCCCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532 29 PFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN 65 (173)
Q Consensus 29 ~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~ 65 (173)
+.+||.+|| +++| ..|++ |+|..|.+..|..+.
T Consensus 5 ~~~LP~GWe---~~~d-~~Gr~YY~n~~t~~T~We~P~ 38 (43)
T 2dmv_A 5 SSGLPPGWE---QRVD-QHGRVYYVDHVEKRTTWDRPS 38 (43)
T ss_dssp CCSCCTTEE---EEEC-TTSCEEEEETTTCCEESSCSS
T ss_pred CCCCCCCce---EEEC-CCCCEEEEECCCCCEecCCcC
Confidence 468999998 8889 58999 779888777777664
No 9
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=97.32 E-value=0.00013 Score=45.58 Aligned_cols=32 Identities=19% Similarity=-0.034 Sum_probs=26.2
Q ss_pred CCCCCcchhccceeeeeccccE-EEeeccCcccCCCC
Q 045532 29 PFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNG 64 (173)
Q Consensus 29 ~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~ 64 (173)
+.+||.+|| ++.| ..|++ |+|..|.+..|..|
T Consensus 5 ~~~LP~gWe---~~~~-~~Gr~Yy~nh~t~~ttW~~P 37 (40)
T 2ysg_A 5 SSGLPYGWE---EAYT-ADGIKYFINHVTQTTSWIHP 37 (40)
T ss_dssp SSCCCTTEE---EEEC-SSSCEEEEESSSCCEECCCC
T ss_pred cCCCCCCcE---EEEc-CCCCEEEEECCCCcCcCCCC
Confidence 458999998 8889 89999 77888877777655
No 10
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=97.32 E-value=0.00012 Score=45.38 Aligned_cols=31 Identities=19% Similarity=-0.001 Sum_probs=25.2
Q ss_pred CCCCcchhccceeeeeccccE-EEeeccCcccCCCC
Q 045532 30 FPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNG 64 (173)
Q Consensus 30 ~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~ 64 (173)
-|||.+|| .+.| .+|++ |+|..|.+..|..+
T Consensus 5 ~~LP~gWe---~~~d-~~G~~YY~n~~t~~t~We~P 36 (39)
T 2kyk_A 5 GPLPPGWE---RRVD-NMGRIYYVDHFTRTTTWQRP 36 (39)
T ss_dssp CCCCSSCE---EEEC-TTSCEEEECSSSCCEECCCC
T ss_pred CCCCCCcE---EEEc-CCCCEEEEECCCCCEeccCC
Confidence 47999998 8889 69999 77888877777655
No 11
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}
Probab=97.30 E-value=0.00021 Score=46.97 Aligned_cols=36 Identities=17% Similarity=-0.088 Sum_probs=28.3
Q ss_pred CCCCCCCcchhccceeeeeccccE-EEeeccCcccCCCCCC
Q 045532 27 FLPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGNV 66 (173)
Q Consensus 27 ~l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~~ 66 (173)
+.+.+||.+|| ++.| ..|++ |+|..|.+..|..|..
T Consensus 9 ~~~~~LP~GWe---~~~d-~~Gr~YYvnh~t~~T~We~P~~ 45 (49)
T 2zaj_A 9 DSELELPAGWE---KIED-PVYGIYYVDHINRKTQYENPSG 45 (49)
T ss_dssp CCSSCCCTTEE---EEEE-TTTEEEEEETTTTEEESSCCCS
T ss_pred CCCCCCCcCce---EEEc-CCCCEEEEeCCCCCEecCCCCC
Confidence 34578999998 8889 78999 7788887777776643
No 12
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=97.29 E-value=0.00014 Score=45.51 Aligned_cols=33 Identities=6% Similarity=-0.143 Sum_probs=26.4
Q ss_pred CCCCCCcchhccceeeeeccccE-EEeeccCcccCCCC
Q 045532 28 LPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNG 64 (173)
Q Consensus 28 l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~ 64 (173)
-+.+||.+|| ++.| .+|++ |+|..|.+..|..+
T Consensus 4 ~~~~LP~gWe---~~~~-~~G~~Yy~nh~t~~ttw~~P 37 (40)
T 2ysf_A 4 GSSGLPEGWE---MRFT-VDGIPYFVDHNRRTTTYIDP 37 (40)
T ss_dssp CCCCCCSSEE---EEEC-TTCCEEEEETTTCCEESSCT
T ss_pred CcCCCCcCcE---EEEc-CCCCEEEEECCCCcEecCCC
Confidence 3568999998 8889 89999 77888877777654
No 13
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=97.26 E-value=0.00021 Score=46.22 Aligned_cols=33 Identities=18% Similarity=0.072 Sum_probs=26.7
Q ss_pred CCCCCCcchhccceeeeeccccE-EEeeccCcccCCCC
Q 045532 28 LPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNG 64 (173)
Q Consensus 28 l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~ 64 (173)
.+.+||.+|| +++| .+|++ |+|..|.+..|..+
T Consensus 8 ~~~~LP~gWe---~~~~-~~G~~Yyinh~t~~TtWe~P 41 (46)
T 2l4j_A 8 ASGPLPEGWE---QAIT-PEGEIYYINHKNKTTSWLDP 41 (46)
T ss_dssp TTSCCCTTCE---EEEC-TTSCEEEEETTTTEEECSCC
T ss_pred cCCCCCcCce---eEEC-CCCCEEEEECCCCCEeCCCC
Confidence 4568999998 8899 89999 77888876777655
No 14
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=97.21 E-value=0.00017 Score=47.00 Aligned_cols=34 Identities=9% Similarity=-0.123 Sum_probs=25.8
Q ss_pred CCCCCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532 28 LPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN 65 (173)
Q Consensus 28 l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~ 65 (173)
.+.+||.+|| .++| .+|++ |+|..|.+..|..+.
T Consensus 9 ~~~~LP~gWe---~~~~-~~G~~Yy~nh~T~~ttWe~Pr 43 (49)
T 2kpz_A 9 EQGFLPKGWE---VRHA-PNGRPFFIDHNTKTTTWEDPR 43 (49)
T ss_dssp ---CCCTTEE---EEEC-TTSCEEEEETTTTEEESSCTT
T ss_pred cCCCCCCCcE---EEEC-CCCCEEEEECCCCCEecCCCC
Confidence 3568999998 8889 79999 778888777776653
No 15
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Probab=97.19 E-value=0.00031 Score=46.84 Aligned_cols=36 Identities=17% Similarity=0.059 Sum_probs=28.3
Q ss_pred CCCCCCCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532 26 PFLPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN 65 (173)
Q Consensus 26 ~~l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~ 65 (173)
...+.+||.||| +++| .+|++ |+|..|.+..|..+.
T Consensus 13 ~~~~~~LP~GWe---~~~~-~~Gr~Yyinh~tk~TtW~dPr 49 (53)
T 2jmf_A 13 LINEGPLPPGWE---IRYT-AAGERFFVDHNTRRTTFEDPR 49 (53)
T ss_dssp TTSCSCCCTTEE---EEEC-TTSCEEEEETTTCCEESSCCC
T ss_pred cCcCCCCCcCcE---EEEc-CCCCEEEEeCCCCcEecCCCC
Confidence 345678999999 8889 89999 668888777776653
No 16
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=97.19 E-value=0.00023 Score=44.09 Aligned_cols=33 Identities=15% Similarity=0.087 Sum_probs=26.5
Q ss_pred CCCCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532 29 PFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN 65 (173)
Q Consensus 29 ~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~ 65 (173)
+.+||.+|| ++.| ..|++ |+|..|.+..|..+.
T Consensus 5 ~~~LP~gW~---~~~d-~~Gr~YY~n~~T~~t~We~P~ 38 (40)
T 2ysh_A 5 SSGLPPGWQ---SYLS-PQGRRYYVNTTTNETTWERPS 38 (40)
T ss_dssp CSSCCTTCE---EEEC-TTSCEEEECSSSCCEESSSCC
T ss_pred CCCCCCCce---EEEC-CCCCEEEEECCCCCEeCCCCC
Confidence 468999998 8889 68999 779988877776553
No 17
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}
Probab=97.18 E-value=0.00024 Score=45.84 Aligned_cols=34 Identities=9% Similarity=-0.027 Sum_probs=27.0
Q ss_pred CCCCCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532 28 LPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN 65 (173)
Q Consensus 28 l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~ 65 (173)
.+.+||.+|| +++| .+|++ |+|..|.+..|..+.
T Consensus 7 ~~~~LP~gWe---~~~~-~~Gr~Yyinh~t~~TtW~~Pr 41 (46)
T 2ez5_W 7 EEEPLPPRWS---MQVA-PNGRTFFIDHASRRTTWIDPR 41 (46)
T ss_dssp CSCCCCTTEE---EEEC-TTSSEEEEETTTTEEESBCTT
T ss_pred CCCCCCcCcE---EEEc-CCCCEEEEECCCCCEeccCCC
Confidence 4568999998 8888 68999 778888777776653
No 18
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=97.11 E-value=0.00028 Score=44.42 Aligned_cols=33 Identities=18% Similarity=0.136 Sum_probs=25.9
Q ss_pred CCCCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532 29 PFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN 65 (173)
Q Consensus 29 ~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~ 65 (173)
+.+||.+|| ++.| .+|++ |+|..|....|..+.
T Consensus 6 ~~~LP~gW~---~~~~-~~Gr~YY~n~~T~~t~We~P~ 39 (43)
T 1ymz_A 6 SMPLPPGWE---RRTD-VEGKVYYFNVRTLTTTWERPT 39 (43)
T ss_dssp -CCCCSSEE---EEEC-TTSCEEEEETTTTEEESSCCC
T ss_pred CCCCCCCCE---EEEC-CCCCEEEEECCCCCCcccCCc
Confidence 458999998 8888 59999 779998777776653
No 19
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Probab=96.95 E-value=0.00047 Score=45.18 Aligned_cols=34 Identities=15% Similarity=-0.006 Sum_probs=26.5
Q ss_pred CCCCCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532 28 LPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN 65 (173)
Q Consensus 28 l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~ 65 (173)
.+.+||.+|| .++|. .|++ |+|..|.+..|..+.
T Consensus 8 ~~~~LP~gWe---~~~~~-~Gr~Yy~nh~t~~T~W~~P~ 42 (49)
T 2ysb_A 8 EDLPLPPGWS---VDWTM-RGRKYYIDHNTNTTHWSHPL 42 (49)
T ss_dssp CCCCCCTTEE---EEECS-SSCEEEEETTTTEEESSCTT
T ss_pred CCCCCCCCce---EEECC-CCCEEEEEcCCCCEEecCCC
Confidence 5678999998 88884 8999 668887767776553
No 20
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.93 E-value=0.00042 Score=47.54 Aligned_cols=34 Identities=18% Similarity=-0.070 Sum_probs=27.1
Q ss_pred CCCCCCCcchhccceeeeeccccE-EEeeccCcccCCCC
Q 045532 27 FLPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNG 64 (173)
Q Consensus 27 ~l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~ 64 (173)
+-+.+||.+|| ++.| ..|++ |+|..|.+..|..|
T Consensus 9 d~~~~LP~GWE---~~~d-~~Gr~YYvnh~tk~T~We~P 43 (60)
T 2yse_A 9 DSELELPAGWE---KIED-PVYGIYYVDHINRKTQYENP 43 (60)
T ss_dssp CCCSSCCSSEE---EEEC-SSSCEEEEETTTTEEESSCH
T ss_pred CCCCCCCCCcE---EEEC-CCCCEEEEeCCCCCeeccCC
Confidence 34578999998 8889 78999 66888876777664
No 21
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=96.84 E-value=0.0007 Score=45.24 Aligned_cols=36 Identities=8% Similarity=-0.236 Sum_probs=30.1
Q ss_pred CCCCCcchhccceeeeeccccE-EEeeccCcccCCCCCCC
Q 045532 29 PFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGNVP 67 (173)
Q Consensus 29 ~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~~p 67 (173)
+.+||.||| .+.|-.+|++ |+|..|.+..|..|...
T Consensus 5 ~~~LP~GW~---~~~~~~~Gr~YY~N~~T~~sqWe~P~~~ 41 (54)
T 2jv4_A 5 NTGLPAGWE---VRHSNSKNLPYYFNPATRESRWEPPADT 41 (54)
T ss_dssp CCCCCSSCC---EEECSSSSCEEEEETTTTEEESSCCTTS
T ss_pred CCCCCCCcE---EEEECCCCCEEEEECCCCcEEecCCCCc
Confidence 467999998 8889889999 77999988888877554
No 22
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=96.77 E-value=0.0012 Score=43.28 Aligned_cols=34 Identities=12% Similarity=-0.095 Sum_probs=26.4
Q ss_pred CCCCCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532 28 LPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN 65 (173)
Q Consensus 28 l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~ 65 (173)
.+.+||.||| ++.|- .|++ |+|..|.+..|..+.
T Consensus 10 ~~~~LP~GWe---~~~d~-~g~~YYvnh~t~~T~We~P~ 44 (49)
T 2dwv_A 10 EREGLPPGWE---RVESS-EFGTYYVDHTNKRAQYRHPS 44 (49)
T ss_dssp CSSCCCTTEE---EEEET-TTEEEEEETTTTEEESSCCC
T ss_pred CCCCCCcCcE---EEECC-CCCEEEEECCCCCEeccCcC
Confidence 3568999999 88884 8999 668888767776654
No 23
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}
Probab=96.67 E-value=0.0013 Score=43.93 Aligned_cols=33 Identities=6% Similarity=-0.125 Sum_probs=25.7
Q ss_pred CCCCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532 29 PFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN 65 (173)
Q Consensus 29 ~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~ 65 (173)
+.+||.+|| +++| .+|++ |+|..|.+..|..+.
T Consensus 9 ~~~LP~GWe---~~~~-~~G~~Yyinh~tk~TtwedPr 42 (54)
T 1wmv_A 9 AGDLPYGWE---QETD-ENGQVFFVDHINKRTTYLDPR 42 (54)
T ss_dssp SSCSCTTEE---EEEC-TTSCEEEEESSSCCEESSCTT
T ss_pred CCCCCcCcE---EEEC-CCCCEEEEeCCCCCEeecCCC
Confidence 458999999 8889 78999 668877767776653
No 24
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=96.61 E-value=0.0017 Score=43.89 Aligned_cols=35 Identities=17% Similarity=0.050 Sum_probs=27.1
Q ss_pred CCCCCCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532 27 FLPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN 65 (173)
Q Consensus 27 ~l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~ 65 (173)
..+.+||.+|| ++.| .+|++ |+|..|.+..|..+.
T Consensus 10 ~~~~~LP~GWe---~~~~-~~Gr~Yyinh~tk~TtWe~Pr 45 (57)
T 2ysd_A 10 DNLGPLPENWE---MAYT-ENGEVYFIDHNTKTTSWLDPR 45 (57)
T ss_dssp SCCCSCCSSEE---EEEC-SSCCEEEEETTTTEEESSCTT
T ss_pred CCCCCCCcCcE---EEEC-CCCCEEEEECCCCcEecCCCC
Confidence 34568999999 7788 58999 668888777776654
No 25
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Probab=96.35 E-value=0.0017 Score=41.29 Aligned_cols=37 Identities=11% Similarity=0.070 Sum_probs=27.7
Q ss_pred CCCCCcchhccceeeeeccccE-EEeeccCcccCCCCCCCcc
Q 045532 29 PFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGNVPKL 69 (173)
Q Consensus 29 ~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~~p~L 69 (173)
+.+||.||| ...+ ..|++ |+|.-|.+..|..+....|
T Consensus 6 ~~~LP~GWe---~~~~-~~gr~y~~n~~t~~t~W~dPr~~~~ 43 (46)
T 1jmq_A 6 DVPLPAGWE---MAKT-SSGQRYFKNHIDQTTTWQDPRKAML 43 (46)
T ss_dssp SCCCCTTBC---CBCC-SSCCCBEEETTTTEEESSCTTTSSS
T ss_pred CCCCCcCcE---EEEc-CCCceEEEEecCCceeecCCCchhh
Confidence 458999998 7778 88999 7788877677776654433
No 26
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=96.03 E-value=0.0036 Score=44.61 Aligned_cols=35 Identities=6% Similarity=-0.036 Sum_probs=27.6
Q ss_pred CCCCCcchhccceeeeeccccE-EEeeccCcccCCCCCCC
Q 045532 29 PFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGNVP 67 (173)
Q Consensus 29 ~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~~p 67 (173)
..+||.+|| ++.| ..|++ |+|..|....|..+..+
T Consensus 10 ~~~LP~gWe---~~~~-~~Gr~Yy~n~~t~~t~W~~P~~~ 45 (88)
T 1tk7_A 10 LGPLPDGWE---KKIQ-SDNRVYFVNHKNRTTQWEDPRTQ 45 (88)
T ss_dssp TSSSSSSCC---EEEE-TTTEEEEEETTTTEEEEESCCCT
T ss_pred cCCCCCCcE---EEEC-CCCCEEEEECCCCCeEeeccccc
Confidence 448999998 8888 78999 77988877777766443
No 27
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}
Probab=96.03 E-value=0.002 Score=42.66 Aligned_cols=38 Identities=8% Similarity=-0.164 Sum_probs=30.9
Q ss_pred CCCCcchhccceeeeeccccE-EEeeccCcccCCCCCCCccc
Q 045532 30 FPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGNVPKLD 70 (173)
Q Consensus 30 ~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~~p~Ld 70 (173)
..||.+|| .+.|-.+|+. |||..|.+..|..+..+..|
T Consensus 9 ~~LP~gW~---~~~~~~~gr~YY~N~~T~~SqWe~P~~~~~d 47 (52)
T 2jx8_A 9 ELVHAGWE---KCWSRRENRPYYFNRFTNQSLWEMPVLGQHD 47 (52)
T ss_dssp HHHHHTCC---EEEETTTTEEEEEETTTTEEESSCCCCTTSC
T ss_pred CCCCcCcE---EEEccccCCEEEEECCCCCEEeCCCCCCCCC
Confidence 35899997 8889899999 88999988888887665433
No 28
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=95.96 E-value=0.0061 Score=38.27 Aligned_cols=34 Identities=15% Similarity=-0.046 Sum_probs=25.1
Q ss_pred CCCCCCCcchhccceeeeeccccEEEeeccCcccCCCC
Q 045532 27 FLPFPHPRLAKALFSFYLKAGGGIYRCVHTAKMSRRNG 64 (173)
Q Consensus 27 ~l~~plP~~WE~~~q~LDlqSGkiyln~rt~kmS~~~~ 64 (173)
.-+.+||.+|| ++.|-. |+-|+|..|....|..+
T Consensus 4 ~~~~~LP~GWe---~~~~~~-G~YY~n~~t~~tqWe~P 37 (39)
T 2ysc_A 4 GSSGGLPPGWR---KIHDAA-GTYYWHVPSGSTQWQRP 37 (39)
T ss_dssp CCCCCCCTTEE---EEEETT-EEEEEESSSCCEESSCC
T ss_pred CCCCCCCCCcE---EEEcCC-CCEEEEcCCCCEeccCC
Confidence 34568999998 787866 85578998876666544
No 29
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=95.77 E-value=0.0076 Score=43.11 Aligned_cols=35 Identities=14% Similarity=0.102 Sum_probs=27.8
Q ss_pred CCCCCCcchhccceeeeeccccE-EEeeccCcccCCCCCC
Q 045532 28 LPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGNV 66 (173)
Q Consensus 28 l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~~ 66 (173)
-+.+||.+|| ++.| ..|++ |+|..|...+|..+..
T Consensus 6 ~~~~LP~gWe---~~~~-~~Gr~YY~n~~t~~t~W~~P~~ 41 (90)
T 2kxq_A 6 SPPDLPEGYE---QRTT-QQGQVYFLHTQTGVSTWHDPRV 41 (90)
T ss_dssp SCCSCCSSCE---EEEE-TTTEEEEEETTTTEEESSCSSS
T ss_pred CCCCCCCCcE---EEEC-CCCCEEEEECCCCeEeeecccc
Confidence 3568999998 8888 68999 7798887788876643
No 30
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Probab=95.66 E-value=0.0059 Score=38.17 Aligned_cols=30 Identities=13% Similarity=0.025 Sum_probs=23.1
Q ss_pred CCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532 31 PHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN 65 (173)
Q Consensus 31 plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~ 65 (173)
+||.+|| ++.|. .| + |+|..|....|..+.
T Consensus 3 ~LP~GWe---~~~d~-~g-~YY~n~~t~~tqWe~P~ 33 (38)
T 2ho2_A 3 DLPAGWM---RVQDT-SG-TYYWHIPTGTTQWEPPG 33 (38)
T ss_dssp CSCTTEE---EEECS-SC-EEEEETTTTEEESSCCC
T ss_pred cCCCCce---EEEeC-CC-CEEEecCCCCEeccCCC
Confidence 6999998 88885 78 8 778888766666653
No 31
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=95.13 E-value=0.011 Score=42.06 Aligned_cols=32 Identities=19% Similarity=0.107 Sum_probs=24.7
Q ss_pred CCCCCcchhccceeeeeccccE-EEeeccCcccCCCC
Q 045532 29 PFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNG 64 (173)
Q Consensus 29 ~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~ 64 (173)
+.+||.+|| ++.| ..|++ |+|..|.+..|..+
T Consensus 54 ~~~LP~gWe---~~~~-~~G~~Yy~nh~t~~ttw~~P 86 (88)
T 1tk7_A 54 EGPLPPGWE---IRYT-AAGERFFVDHNTRRTTFEDP 86 (88)
T ss_dssp SCSSCSSCE---EEEE-TTTEEEEEETTTTEEESSSS
T ss_pred ccccCCceE---EEEC-CCCCEEEEECCCCcEeCCCC
Confidence 458999998 7888 78999 77888876666543
No 32
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=95.05 E-value=0.013 Score=41.87 Aligned_cols=32 Identities=13% Similarity=-0.009 Sum_probs=25.1
Q ss_pred CCCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532 30 FPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN 65 (173)
Q Consensus 30 ~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~ 65 (173)
.+||.+|| .+.| ..|++ |+|..|.+..|..+.
T Consensus 54 ~~LP~gWe---~~~~-~~G~~Yy~n~~t~~t~w~~Pr 86 (90)
T 2kxq_A 54 GPLPPGWE---IRNT-ATGRVYFVDHNNRTTQFTDPR 86 (90)
T ss_dssp CCCCSSCC---EEEC-TTSCEEEEETTTTEEESSCTT
T ss_pred cccCCCce---EEEC-CCCCEEEEECCCCcEecCCCC
Confidence 47999998 7778 78999 778888767776553
No 33
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...
Probab=94.67 E-value=0.013 Score=46.10 Aligned_cols=36 Identities=11% Similarity=-0.045 Sum_probs=25.6
Q ss_pred CCCCCcchhccceeeeeccccE-EEeeccCcccCCCCCCC
Q 045532 29 PFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGNVP 67 (173)
Q Consensus 29 ~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~~p 67 (173)
+-+||.+|| .+.|-.+|++ |+|..|.+..|..+..+
T Consensus 7 ~~~LP~gWe---~~~~~~~g~~yy~n~~t~~t~We~P~~~ 43 (166)
T 3tc5_A 7 EEKLPPGWE---KAMSRSSGRVYYFNHITNASQWERPSGN 43 (166)
T ss_dssp ---CCTTEE---EEECTTTCCEEEEETTTCCEESSCC---
T ss_pred CCCCCCCce---EEEcCCCCCEEEEECCCCCEEecCCCCC
Confidence 468999998 8889889999 66888877778766443
No 34
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=94.51 E-value=0.035 Score=37.83 Aligned_cols=33 Identities=12% Similarity=-0.026 Sum_probs=25.7
Q ss_pred CCCCCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532 28 LPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN 65 (173)
Q Consensus 28 l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~ 65 (173)
.+-+||.||| +..|- +| + |+|..|.+.-|..+.
T Consensus 16 ~~~~LPpGW~---~~~D~-sG-tYY~h~~T~tTQWerP~ 49 (55)
T 2e45_A 16 TDSDLPAGWM---RVQDT-SG-TYYWHIPTGTTQWEPPG 49 (55)
T ss_dssp SCSCCCTTEE---EEEET-TE-EEEEETTTCCEESSCCC
T ss_pred CCCCCCCCCe---EeecC-CC-CEEEEcCCCCCccCCCC
Confidence 4558999998 88898 99 8 668888776666653
No 35
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=94.16 E-value=0.034 Score=42.24 Aligned_cols=33 Identities=9% Similarity=-0.082 Sum_probs=24.9
Q ss_pred CCCCCCcchhccceeeeeccccE-EEeeccCcccCCCC
Q 045532 28 LPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNG 64 (173)
Q Consensus 28 l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~ 64 (173)
-+.+||.||| ...|- +|++ |+|.-|.+..|..|
T Consensus 69 ~~~pLP~GWE---~r~d~-~Gr~YfIdH~tktTtW~dP 102 (109)
T 3l4h_A 69 TRLELPRGWE---IKTDQ-QGKSFFVDHNSRATTFIDP 102 (109)
T ss_dssp TTSCCCTTEE---EEECT-TCCEEEEETTTTEEESSCS
T ss_pred CCCCCCCCCe---EEECC-CCCEEEEeCCCCCEeeCCC
Confidence 3568999999 88887 8999 55666655666654
No 36
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=92.56 E-value=0.051 Score=38.95 Aligned_cols=35 Identities=9% Similarity=-0.014 Sum_probs=27.7
Q ss_pred CCCCCCcchhccceeeeeccccE-EEeeccCcccCCCCCC
Q 045532 28 LPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGNV 66 (173)
Q Consensus 28 l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~~ 66 (173)
-+.+||.+|+ ++.|- .|++ |||..|....|..|..
T Consensus 8 ~~~~lp~~W~---e~~~~-~Gr~YYyN~~T~~s~We~P~~ 43 (92)
T 2l5f_A 8 TASGAKSMWT---EHKSP-DGRTYYYNTETKQSTWEKPDD 43 (92)
T ss_dssp STTBTTTTEE---EEECT-TSCEEEEETTTTEEESSCSGG
T ss_pred cCCCCCCCcE---EEEcC-CCCEEEEECCCCceecccCcc
Confidence 4567999997 77776 8999 7799998777777643
No 37
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=91.18 E-value=0.18 Score=31.35 Aligned_cols=32 Identities=9% Similarity=0.045 Sum_probs=24.4
Q ss_pred CCCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532 30 FPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN 65 (173)
Q Consensus 30 ~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~ 65 (173)
.|+|.+|+ .+. ...|++ |||..|....|..|.
T Consensus 6 ~~~~~~W~---e~~-~~~G~~YYyN~~T~eS~We~P~ 38 (40)
T 2ysi_A 6 SGTEEIWV---ENK-TPDGKVYYYNARTRESAWTKPD 38 (40)
T ss_dssp CCCCCSEE---EEE-CTTSCEEEEETTTCCEESSCCS
T ss_pred CCCCCCCE---EEE-CCCCCEEEEECCCCCEEeCCCC
Confidence 57888996 543 678999 889999877776653
No 38
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=90.77 E-value=0.077 Score=36.11 Aligned_cols=31 Identities=19% Similarity=0.004 Sum_probs=23.5
Q ss_pred CCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532 31 PHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN 65 (173)
Q Consensus 31 plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~ 65 (173)
.||.+|| .+.| ..|++ |+|..|....|..|.
T Consensus 40 ~lp~gW~---~~~~-~~Gr~Yy~n~~t~~t~W~~P~ 71 (75)
T 1o6w_A 40 LRENGWK---AAKT-ADGKVYYYNPTTRETSWTIPA 71 (75)
T ss_dssp HHHHTCE---EEEC-TTCCEEEEETTTTEEESSCCC
T ss_pred CCCCeEE---EEEC-CCCCEEEEECCCCCEECCCCC
Confidence 4788998 6666 67999 779988767776653
No 39
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=86.96 E-value=0.26 Score=43.99 Aligned_cols=34 Identities=9% Similarity=-0.059 Sum_probs=25.0
Q ss_pred CCCCCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532 28 LPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN 65 (173)
Q Consensus 28 l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~ 65 (173)
..-|||.||| ...| .+|++ |++..|.++.|..|.
T Consensus 5 ~~~~lP~gWe---~~~~-~~g~~y~i~h~~~~t~w~~Pr 39 (429)
T 3olm_A 5 QLGPLPSGWE---MRLT-NTARVYFVDHNTKTTTWDDPR 39 (429)
T ss_dssp CCCCCCTTCC---CCCS-SCCCCCEEETTTTEEESSCTT
T ss_pred cCCCCCCCce---eEEC-CCCCeEEEeCCCcceeccCCC
Confidence 3458999999 7778 69999 556666557776553
No 40
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=85.81 E-value=0.32 Score=30.33 Aligned_cols=30 Identities=10% Similarity=0.090 Sum_probs=19.9
Q ss_pred CCCcchhccceeeeeccccE-EEeeccCcccCCCC
Q 045532 31 PHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNG 64 (173)
Q Consensus 31 plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~ 64 (173)
++|.+|+ .+. ...|+. |||..|....|..|
T Consensus 9 ~~~~~W~---e~~-~~~G~~YYyN~~T~eS~We~P 39 (41)
T 1ywi_A 9 SAKSMWT---EHK-SPDGRTYYYNTETKQSTWEKP 39 (41)
T ss_dssp ---CCEE---EEE-ETTTEEEEEETTTTEEEESCC
T ss_pred CCCCCcE---EEE-CCCCCEEEEECCCCCEEeCCC
Confidence 4577996 554 458999 88999976666554
No 41
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=84.88 E-value=0.4 Score=33.76 Aligned_cols=22 Identities=27% Similarity=0.770 Sum_probs=18.3
Q ss_pred eeCccceEEEEeeCCCCCCCCCCCcc
Q 045532 126 VGCPRCLMYVMLSEDDPKCPKCKSTV 151 (173)
Q Consensus 126 ~gC~~ClmYVMl~k~~P~CP~Cks~v 151 (173)
.+|.+|+..| .+..||+|.+.-
T Consensus 12 ~AC~~C~~~~----~~~~CPnC~s~~ 33 (69)
T 1ryq_A 12 KACRHCHYIT----SEDRCPVCGSRD 33 (69)
T ss_dssp EEETTTCBEE----SSSSCTTTCCCC
T ss_pred hhHHhCCccc----cCCcCCCccCCc
Confidence 5899999955 778999999764
No 42
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=84.79 E-value=0.52 Score=27.18 Aligned_cols=24 Identities=8% Similarity=-0.024 Sum_probs=18.9
Q ss_pred chhccceeeeeccccE-EEeeccCcccCCC
Q 045532 35 LAKALFSFYLKAGGGI-YRCVHTAKMSRRN 63 (173)
Q Consensus 35 ~WE~~~q~LDlqSGki-yln~rt~kmS~~~ 63 (173)
+|| .|-.+|+. |||..|....|..
T Consensus 2 gWe-----~~~~~g~~YYyN~~T~~s~We~ 26 (27)
T 1e0n_A 2 GWE-----IIHENGRPLYYNAEQKTKLHYP 26 (27)
T ss_dssp CEE-----EEESSSSEEEEETTTTEEESSC
T ss_pred CCe-----EECCCCCeEEEECCCCCEeccC
Confidence 684 79999999 8899997666543
No 43
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=84.60 E-value=0.17 Score=42.78 Aligned_cols=35 Identities=11% Similarity=-0.063 Sum_probs=25.9
Q ss_pred CCCCCCCcchhccceeeeeccccEEE-eeccCcccCCCCC
Q 045532 27 FLPFPHPRLAKALFSFYLKAGGGIYR-CVHTAKMSRRNGN 65 (173)
Q Consensus 27 ~l~~plP~~WE~~~q~LDlqSGkiyl-n~rt~kmS~~~~~ 65 (173)
|+..|||.+|| ++.+ ..|+.|| |-.|.++.|..|+
T Consensus 7 ~~~~~l~~~we---~~~~-~~~~~y~~~h~~~tt~w~~p~ 42 (261)
T 1eg3_A 7 FLSTSVQGPWE---RAIS-PNKVPYYINHETQTTCWDHPK 42 (261)
T ss_dssp HHHTTCCTTEE---EEEC-TTSCEEEEETTTTEEESSCHH
T ss_pred ccCCCCCCCcc---eeEC-CCCCeEeecCCcccccCCCCc
Confidence 55679999999 7877 5899955 6666667776543
No 44
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=83.33 E-value=0.67 Score=31.69 Aligned_cols=31 Identities=10% Similarity=-0.083 Sum_probs=23.1
Q ss_pred CCCCcchhccceeeeeccccE-EEeeccCcccCCCC
Q 045532 30 FPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNG 64 (173)
Q Consensus 30 ~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~ 64 (173)
.++|.+|+ .+.|- .|++ |||..|....|..|
T Consensus 42 ~~~~~~W~---~~~~~-~Gr~YyyN~~T~~s~We~P 73 (75)
T 2jxw_A 42 TAVKTVWV---EGLSE-DGFTYYYNTETGESRWEKP 73 (75)
T ss_dssp SSCCCSEE---EEEET-TTEEEEEETTTTEEESSCC
T ss_pred cCCCccEE---EEECC-CCCEEEEECcCCCEeccCc
Confidence 36788997 66665 7999 88999876666554
No 45
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=82.18 E-value=0.87 Score=27.56 Aligned_cols=31 Identities=13% Similarity=0.048 Sum_probs=21.9
Q ss_pred CCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532 31 PHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN 65 (173)
Q Consensus 31 plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~ 65 (173)
+...+|+ .+.+ ..|+. |||..|....|..|.
T Consensus 3 ~~~~~W~---e~~~-~~G~~YYyN~~T~es~We~P~ 34 (37)
T 1e0l_A 3 TAVSEWT---EYKT-ADGKTYYYNNRTLESTWEKPQ 34 (37)
T ss_dssp SSSCSCE---EEEC-TTSCEEEEETTTTEEESSCCS
T ss_pred CCCCCeE---EEEC-CCCCEEEEECCCCCEEecCCC
Confidence 3455895 5555 45999 889999877776654
No 46
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}
Probab=77.19 E-value=1.6 Score=33.90 Aligned_cols=33 Identities=9% Similarity=-0.168 Sum_probs=25.3
Q ss_pred CCCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532 30 FPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN 65 (173)
Q Consensus 30 ~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~ 65 (173)
..||.+|| .+++--.|+. |+|.-|....|..+.
T Consensus 6 ~~lp~~w~---~~~s~s~~~~Yy~~~~~~~~~~~~~~ 39 (177)
T 1yw5_A 6 TGLPPNWT---IRVSRSHNKEYFLNQSTNESSWDPPY 39 (177)
T ss_dssp CCCCTTEE---EEECSSTTCEEEEETTTCCEESSCCT
T ss_pred CCCCchHH---HHhcccCCchhhhhHHHhhHhhcCcc
Confidence 56999998 8889889999 667776656665543
No 47
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=76.27 E-value=0.93 Score=32.26 Aligned_cols=30 Identities=13% Similarity=0.016 Sum_probs=22.0
Q ss_pred CCCcchhccceeeeeccccE-EEeeccCcccCCCC
Q 045532 31 PHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNG 64 (173)
Q Consensus 31 plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~ 64 (173)
++|.+|| .+.+ ..|++ |||..|....|..|
T Consensus 52 ~~~~~W~---~~~~-~~Gr~Yy~N~~T~~s~We~P 82 (92)
T 2l5f_A 52 LSKCPWK---EYKS-DSGKTYYYNSQTKESRWAKP 82 (92)
T ss_dssp HHSCSEE---EEEC-TTCCEEEEETTTTEEESCCC
T ss_pred ccccceE---EEEC-CCCCEEEEECCCCCeeccCc
Confidence 4677997 5544 68999 77998876666654
No 48
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=76.04 E-value=1 Score=32.61 Aligned_cols=29 Identities=28% Similarity=0.635 Sum_probs=18.9
Q ss_pred CCcceEEeeCccceEEEEeeCCCCCCCCCCCcc
Q 045532 119 EATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTV 151 (173)
Q Consensus 119 ~~~~mV~~gC~~ClmYVMl~k~~P~CP~Cks~v 151 (173)
.+..|..-+|.+|...+ . ...||+|++.-
T Consensus 17 ~~~~m~~rAC~~C~~v~--~--~d~CPnCgs~~ 45 (81)
T 3p8b_A 17 RGSHMSEKACRHCHYIT--S--EDRCPVCGSRD 45 (81)
T ss_dssp -----CCEEETTTCBEE--S--SSSCTTTCCCC
T ss_pred CCcchhHHHHhhCCCcc--C--CCCCCCCCCCc
Confidence 45667788999999875 2 23799999864
No 49
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=70.96 E-value=1.8 Score=29.19 Aligned_cols=27 Identities=22% Similarity=0.129 Sum_probs=21.3
Q ss_pred chhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532 35 LAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN 65 (173)
Q Consensus 35 ~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~ 65 (173)
+|| ++.|- +|++ |+|..|....|..+.
T Consensus 3 ~W~---~~~~~-~Gr~YY~n~~T~~s~W~~P~ 30 (75)
T 1o6w_A 3 IWK---EAKDA-SGRIYYYNTLTKKSTWEKPK 30 (75)
T ss_dssp CEE---EEECT-TCCEEEEETTTTEEESSCCH
T ss_pred CCe---EEECC-CCCeEEEECCCCCEEeecch
Confidence 797 77786 8999 779988777777653
No 50
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=60.44 E-value=4.4 Score=27.53 Aligned_cols=28 Identities=7% Similarity=-0.165 Sum_probs=21.7
Q ss_pred cchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532 34 RLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN 65 (173)
Q Consensus 34 ~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~ 65 (173)
.+|+ ++.|- .|++ |||..|....|..|.
T Consensus 5 ~~W~---e~~~~-~G~~YYyN~~T~~s~We~P~ 33 (75)
T 2jxw_A 5 GRWV---EGITS-EGYHYYYDLISGASQWEKPE 33 (75)
T ss_dssp CCEE---EEEET-TTEEEEEETTTTEEECSCCS
T ss_pred CCcE---EEECC-CCCEEEEECCCCCEeecCCC
Confidence 3797 77776 5999 889999877777664
No 51
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=59.54 E-value=1.9 Score=30.11 Aligned_cols=27 Identities=26% Similarity=0.543 Sum_probs=19.9
Q ss_pred EEeeCccceEEEEee--CCCCCCCCCCCcce
Q 045532 124 VLVGCPRCLMYVMLS--EDDPKCPKCKSTVL 152 (173)
Q Consensus 124 V~~gC~~ClmYVMl~--k~~P~CP~Cks~vl 152 (173)
++.+|+ |..+..+. ...-.|| |...+-
T Consensus 3 ~vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~ 31 (71)
T 1gh9_A 3 IIFRCD-CGRALYSREGAKTRKCV-CGRTVN 31 (71)
T ss_dssp EEEEET-TSCCEEEETTCSEEEET-TTEEEE
T ss_pred EEEECC-CCCEEEEcCCCcEEECC-CCCeee
Confidence 578999 99865544 4447899 998753
No 52
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=55.63 E-value=4 Score=27.63 Aligned_cols=21 Identities=33% Similarity=0.857 Sum_probs=15.4
Q ss_pred eeCccceEEEEeeCCCCCCCCCCCc
Q 045532 126 VGCPRCLMYVMLSEDDPKCPKCKST 150 (173)
Q Consensus 126 ~gC~~ClmYVMl~k~~P~CP~Cks~ 150 (173)
-+|..|++-+ . . ..||+|.+.
T Consensus 2 rAC~~C~~v~--~-~-~~CpnC~~~ 22 (59)
T 3lpe_B 2 RACLKCKYLT--N-D-EICPICHSP 22 (59)
T ss_dssp EEETTTCBEE--S-S-SBCTTTCCB
T ss_pred cccccCCccc--C-C-CCCCCCCCC
Confidence 4799999764 2 2 289999965
No 53
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=52.02 E-value=9.1 Score=27.92 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=25.8
Q ss_pred eEEeeCccceEEEEeeCCCC-CCCCCCCcceeccccC
Q 045532 123 MVLVGCPRCLMYVMLSEDDP-KCPKCKSTVLLDFLHD 158 (173)
Q Consensus 123 mV~~gC~~ClmYVMl~k~~P-~CP~Cks~vll~f~~~ 158 (173)
-+..-|..|--.+=+..... .||.|.+.. +.|+..
T Consensus 71 p~~~~C~~CG~~~e~~~~~~~~CP~Cgs~~-~~i~~G 106 (119)
T 2kdx_A 71 KVELECKDCSHVFKPNALDYGVCEKCHSKN-VIITQG 106 (119)
T ss_dssp CCEEECSSSSCEECSCCSTTCCCSSSSSCC-CEEEES
T ss_pred cceEEcCCCCCEEeCCCCCCCcCccccCCC-cEEecC
Confidence 35788999988766666667 899999884 445443
No 54
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=49.24 E-value=9.2 Score=26.45 Aligned_cols=32 Identities=28% Similarity=0.603 Sum_probs=24.4
Q ss_pred ceEEeeCccceEEEEeeCCC-CCCCCCCCccee
Q 045532 122 SMVLVGCPRCLMYVMLSEDD-PKCPKCKSTVLL 153 (173)
Q Consensus 122 ~mV~~gC~~ClmYVMl~k~~-P~CP~Cks~vll 153 (173)
.-|.--|..|-.-+-+...+ .+||.|...+|.
T Consensus 25 ~~v~Y~C~~CG~~~e~~~~d~irCp~CG~RILy 57 (70)
T 1twf_L 25 ATLKYICAECSSKLSLSRTDAVRCKDCGHRILL 57 (70)
T ss_dssp CCCCEECSSSCCEECCCTTSTTCCSSSCCCCCB
T ss_pred ceEEEECCCCCCcceeCCCCCccCCCCCceEeE
Confidence 34566799999988776555 789999987643
No 55
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=46.73 E-value=11 Score=24.45 Aligned_cols=27 Identities=7% Similarity=-0.086 Sum_probs=19.0
Q ss_pred chhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532 35 LAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN 65 (173)
Q Consensus 35 ~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~ 65 (173)
.|. .+ ....|+. |||+.|....|..|.
T Consensus 8 ~W~---e~-~s~~G~~YYyN~~T~eS~WekP~ 35 (50)
T 2dk1_A 8 RWV---EG-ITSEGYHYYYDLISGASQWEKPE 35 (50)
T ss_dssp CEE---EC-CCSTTCCCEEESSSCCEESSCCT
T ss_pred CeE---EE-ECCCCCEEEEECCCCCEEeeCCh
Confidence 583 44 3446888 889999877777663
No 56
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=42.86 E-value=8.9 Score=21.16 Aligned_cols=9 Identities=44% Similarity=0.468 Sum_probs=7.6
Q ss_pred EEEeeccCc
Q 045532 50 IYRCVHTAK 58 (173)
Q Consensus 50 iyln~rt~k 58 (173)
||+|+||.|
T Consensus 9 iycnrrtgk 17 (21)
T 8tfv_A 9 IYCNRRTGK 17 (26)
T ss_dssp EEEEGGGTE
T ss_pred EEEcCcccc
Confidence 599999975
No 57
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=42.56 E-value=9.3 Score=25.99 Aligned_cols=24 Identities=33% Similarity=0.988 Sum_probs=20.1
Q ss_pred EEeeCccceEEEEeeCCCCCCCCCCCcc
Q 045532 124 VLVGCPRCLMYVMLSEDDPKCPKCKSTV 151 (173)
Q Consensus 124 V~~gC~~ClmYVMl~k~~P~CP~Cks~v 151 (173)
.+.-|+.|..|-+ .-.||.|+...
T Consensus 5 ~mr~C~~CgvYTL----k~~CP~CG~~T 28 (60)
T 2apo_B 5 RMKKCPKCGLYTL----KEICPKCGEKT 28 (60)
T ss_dssp CCEECTTTCCEES----SSBCSSSCSBC
T ss_pred hceeCCCCCCEec----cccCcCCCCcC
Confidence 4678999999988 56699999875
No 58
>1v54_F VI, cytochrome C oxidase polypeptide VB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: g.41.5.3 PDB: 1oco_F* 1occ_F* 1ocz_F* 1ocr_F* 1v55_F* 2dyr_F* 2dys_F* 2eij_F* 2eik_F* 2eil_F* 2eim_F* 2ein_F* 2occ_F* 2ybb_Q* 2zxw_F* 3abk_F* 3abl_F* 3abm_F* 3ag1_F* 3ag2_F* ...
Probab=42.01 E-value=22 Score=25.99 Aligned_cols=30 Identities=30% Similarity=0.817 Sum_probs=21.3
Q ss_pred EEeeCccce------EEEEeeCCCC-CCCCCCCcceec
Q 045532 124 VLVGCPRCL------MYVMLSEDDP-KCPKCKSTVLLD 154 (173)
Q Consensus 124 V~~gC~~Cl------mYVMl~k~~P-~CP~Cks~vll~ 154 (173)
-.+||+ |. +++.|.+..| +||-|.+..-|.
T Consensus 56 RiVGC~-~~~D~h~v~W~~l~~g~~~RC~eCG~~fkL~ 92 (98)
T 1v54_F 56 RIVGCI-CEEDNSTVIWFWLHKGEAQRCPSCGTHYKLV 92 (98)
T ss_dssp EEEEEC-CSTTCSCCEEEEEESSSCEECTTTCCEEEEE
T ss_pred eEEeec-CCCCCceeEEEEEeCCCceECCCCCeEEEEe
Confidence 466776 42 5666888877 999999876554
No 59
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=40.50 E-value=10 Score=28.47 Aligned_cols=28 Identities=29% Similarity=0.638 Sum_probs=19.6
Q ss_pred eEEeeCccceEEEEee--CCCCCCCCCCCcc
Q 045532 123 MVLVGCPRCLMYVMLS--EDDPKCPKCKSTV 151 (173)
Q Consensus 123 mV~~gC~~ClmYVMl~--k~~P~CP~Cks~v 151 (173)
|.-.-|..|-+-+ .. +...+||+|+|..
T Consensus 65 v~p~~C~~CG~~F-~~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 65 IKPAQCRKCGFVF-KAEINIPSRCPKCKSEW 94 (105)
T ss_dssp ECCCBBTTTCCBC-CCCSSCCSSCSSSCCCC
T ss_pred EECcChhhCcCee-cccCCCCCCCcCCCCCc
Confidence 4445788888775 32 3447999999874
No 60
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=39.10 E-value=13 Score=25.25 Aligned_cols=24 Identities=29% Similarity=0.884 Sum_probs=19.7
Q ss_pred EEeeCccceEEEEeeCCCCCCCCCCCcc
Q 045532 124 VLVGCPRCLMYVMLSEDDPKCPKCKSTV 151 (173)
Q Consensus 124 V~~gC~~ClmYVMl~k~~P~CP~Cks~v 151 (173)
-+--|+.|--|.+ ...||.|+...
T Consensus 4 ~mr~C~~Cg~YTL----k~~CP~CG~~t 27 (60)
T 2aus_D 4 RIRKCPKCGRYTL----KETCPVCGEKT 27 (60)
T ss_dssp CCEECTTTCCEES----SSBCTTTCSBC
T ss_pred cceECCCCCCEEc----cccCcCCCCcc
Confidence 3567999999998 56799999876
No 61
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=38.31 E-value=12 Score=21.52 Aligned_cols=11 Identities=36% Similarity=1.162 Sum_probs=9.8
Q ss_pred CCCCCCCCCcc
Q 045532 141 DPKCPKCKSTV 151 (173)
Q Consensus 141 ~P~CP~Cks~v 151 (173)
.++||+|..+|
T Consensus 3 ~~~C~~C~k~V 13 (31)
T 1zfo_A 3 NPNCARCGKIV 13 (31)
T ss_dssp CCBCSSSCSBC
T ss_pred CCcCCccCCEE
Confidence 57999999998
No 62
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*
Probab=34.65 E-value=20 Score=24.54 Aligned_cols=14 Identities=14% Similarity=-0.033 Sum_probs=10.4
Q ss_pred CCCCcchhccceeeeec
Q 045532 30 FPHPRLAKALFSFYLKA 46 (173)
Q Consensus 30 ~plP~~WE~~~q~LDlq 46 (173)
.|||.||+ +.+-+.
T Consensus 4 ~plp~GW~---R~~~~R 17 (69)
T 3vxv_A 4 KPVPCGWE---RVVKQR 17 (69)
T ss_dssp CCSCTTCE---EEEEEC
T ss_pred CcCCCCCE---EEEEEe
Confidence 58999996 666554
No 63
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=33.26 E-value=16 Score=27.66 Aligned_cols=29 Identities=34% Similarity=0.556 Sum_probs=22.3
Q ss_pred eEEeeCccceEEEEeeC-----------C----------CCCCCCCCCcc
Q 045532 123 MVLVGCPRCLMYVMLSE-----------D----------DPKCPKCKSTV 151 (173)
Q Consensus 123 mV~~gC~~ClmYVMl~k-----------~----------~P~CP~Cks~v 151 (173)
-+..-|..|-..+=+.. . .-+||+|++.-
T Consensus 68 p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~ 117 (139)
T 3a43_A 68 EAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHD 117 (139)
T ss_dssp CCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCC
T ss_pred CCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCc
Confidence 35788999987666665 4 67899999874
No 64
>2y69_F Cytochrome C oxidase subunit 5B; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=32.96 E-value=32 Score=26.55 Aligned_cols=32 Identities=28% Similarity=0.707 Sum_probs=22.2
Q ss_pred EEeeCccce------EEEEeeCCCC-CCCCCCCcceeccc
Q 045532 124 VLVGCPRCL------MYVMLSEDDP-KCPKCKSTVLLDFL 156 (173)
Q Consensus 124 V~~gC~~Cl------mYVMl~k~~P-~CP~Cks~vll~f~ 156 (173)
-.+||+ |. +++.|.+..| +||-|.+..-|...
T Consensus 87 RiVGC~-~~~Dsh~v~Wf~L~kg~p~RCpeCG~~fkL~~~ 125 (129)
T 2y69_F 87 RIVGCI-CEEDNSTVIWFWLHKGEAQRCPSCGTHYKLVPH 125 (129)
T ss_dssp EEEEEC-CSTTCSCCEEEEEESSSCEECTTTCCEEEEEEC
T ss_pred eEEeec-CCCCCceeEEEEEeCCCceeCCCCCeEEEEeee
Confidence 356775 42 4666888887 99999987655533
No 65
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=32.58 E-value=12 Score=24.05 Aligned_cols=29 Identities=21% Similarity=0.583 Sum_probs=18.6
Q ss_pred CccceEEEEee-----CCCCCCCCCCCcceeccc
Q 045532 128 CPRCLMYVMLS-----EDDPKCPKCKSTVLLDFL 156 (173)
Q Consensus 128 C~~ClmYVMl~-----k~~P~CP~Cks~vll~f~ 156 (173)
|..|+.-.+-. .....||.|...+..+-+
T Consensus 35 C~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l 68 (79)
T 2egp_A 35 CRACITVSNKEAVTSMGGKSSCPVCGISYSFEHL 68 (79)
T ss_dssp CHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGG
T ss_pred HHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhC
Confidence 56676643332 237899999988765433
No 66
>1s4c_A Protein HI0227; double-stranded beta-helix, structural genomics, unknown function, structural genomics, unknown function; 2.20A {Haemophilus influenzae} SCOP: b.82.2.7 PDB: 1jop_A
Probab=31.46 E-value=13 Score=28.26 Aligned_cols=16 Identities=13% Similarity=-0.008 Sum_probs=13.5
Q ss_pred chhccceeeeec---cccE
Q 045532 35 LAKALFSFYLKA---GGGI 50 (173)
Q Consensus 35 ~WE~~~q~LDlq---SGki 50 (173)
.||.|++++||| +|+-
T Consensus 61 ~~E~Hr~YiDIq~~l~G~E 79 (155)
T 1s4c_A 61 KAELHHEYLDVQVLIRGTE 79 (155)
T ss_dssp CEEECSSEEEEEEEEESCE
T ss_pred ccccccceEEEEecceeeE
Confidence 699999999998 4754
No 67
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=27.16 E-value=13 Score=27.48 Aligned_cols=28 Identities=29% Similarity=0.712 Sum_probs=18.7
Q ss_pred EEeeCccceEEE-------EeeCCCCCCCCCCCcc
Q 045532 124 VLVGCPRCLMYV-------MLSEDDPKCPKCKSTV 151 (173)
Q Consensus 124 V~~gC~~ClmYV-------Ml~k~~P~CP~Cks~v 151 (173)
++++|.-|-+-| +..+.+..||+|+...
T Consensus 34 ~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrY 68 (93)
T 1weo_A 34 LFVACNECGFPACRPCYEYERREGTQNCPQCKTRY 68 (93)
T ss_dssp BCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCC
T ss_pred EEEeeeccCChhhHHHHHHHHhccCccccccCCcc
Confidence 455555555422 3468899999999774
No 68
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=26.78 E-value=25 Score=23.97 Aligned_cols=31 Identities=16% Similarity=0.494 Sum_probs=24.7
Q ss_pred eEEeeCccceEEEEeeCCC-CCCCCCCCccee
Q 045532 123 MVLVGCPRCLMYVMLSEDD-PKCPKCKSTVLL 153 (173)
Q Consensus 123 mV~~gC~~ClmYVMl~k~~-P~CP~Cks~vll 153 (173)
-|.--|..|..-|-+...+ -+||.|...++.
T Consensus 19 ~v~Y~C~~Cg~~~~l~~~~~iRC~~CG~RILy 50 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQAKEVIRCRECGHRVMY 50 (63)
T ss_dssp CCCCBCSSSCCBCCCCSSSCCCCSSSCCCCCB
T ss_pred CeEEECCCCCCeeecCCCCceECCCCCcEEEE
Confidence 4678899999988776544 699999988854
No 69
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.21 E-value=12 Score=24.05 Aligned_cols=27 Identities=22% Similarity=0.635 Sum_probs=17.3
Q ss_pred CccceEEEEee----CCCCCCCCCCCcceec
Q 045532 128 CPRCLMYVMLS----EDDPKCPKCKSTVLLD 154 (173)
Q Consensus 128 C~~ClmYVMl~----k~~P~CP~Cks~vll~ 154 (173)
|..|+.-.+-. .....||.|...+..+
T Consensus 42 C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 42 CQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred HHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 56666532222 3478999999887554
No 70
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=25.09 E-value=17 Score=27.49 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=17.6
Q ss_pred EEeeCccceEEEEeeCCCCCCCCCCCcc
Q 045532 124 VLVGCPRCLMYVMLSEDDPKCPKCKSTV 151 (173)
Q Consensus 124 V~~gC~~ClmYVMl~k~~P~CP~Cks~v 151 (173)
..--|..|.-.+=.......||.|++.+
T Consensus 131 ~~y~C~~Cg~~~~~~~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 131 WRYVCIGCGRKFSTLPPGGVCPDCGSKV 158 (165)
T ss_dssp CCEEESSSCCEESSCCGGGBCTTTCCBE
T ss_pred EEEECCCCCCcccCCCCCCcCCCCCCcc
Confidence 3567999986331112224899999873
No 71
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=24.87 E-value=25 Score=21.80 Aligned_cols=22 Identities=32% Similarity=0.792 Sum_probs=15.4
Q ss_pred CccceEEEEeeCCCCCCCCCCCcceec
Q 045532 128 CPRCLMYVMLSEDDPKCPKCKSTVLLD 154 (173)
Q Consensus 128 C~~ClmYVMl~k~~P~CP~Cks~vll~ 154 (173)
|..|+.- ....||.|...+.++
T Consensus 29 C~~Ci~~-----~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 29 CSGCLEA-----SGMQCPICQAPWPLG 50 (56)
T ss_dssp BTTTCSS-----SSSSCSSCCSSSSCC
T ss_pred cHHHHcc-----CCCCCCcCCcEeecC
Confidence 5566543 567999999887543
No 72
>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}
Probab=23.75 E-value=40 Score=23.17 Aligned_cols=14 Identities=14% Similarity=-0.192 Sum_probs=9.3
Q ss_pred CCCcchhccceeeeecc
Q 045532 31 PHPRLAKALFSFYLKAG 47 (173)
Q Consensus 31 plP~~WE~~~q~LDlqS 47 (173)
+||.||+ +.+-+..
T Consensus 12 ~Lp~GW~---R~~~~R~ 25 (72)
T 2ky8_A 12 ALPPGWK---KEEVIRK 25 (72)
T ss_dssp SSCTTCE---EEEEECC
T ss_pred CCCCCCE---EEEEEec
Confidence 8899996 5544333
No 73
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.28 E-value=24 Score=22.72 Aligned_cols=25 Identities=20% Similarity=0.604 Sum_probs=15.5
Q ss_pred CccceEEEEeeCCCCCCCCCCCcceec
Q 045532 128 CPRCLMYVMLSEDDPKCPKCKSTVLLD 154 (173)
Q Consensus 128 C~~ClmYVMl~k~~P~CP~Cks~vll~ 154 (173)
|..|+.-.+ +....||.|...+...
T Consensus 41 c~~Ci~~~~--~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 41 HDSCIVPWL--EQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp ETTTTHHHH--TTTCSCTTTCCCCCCS
T ss_pred cHHHHHHHH--HcCCcCcCcCCccCCc
Confidence 344554222 3558999999887443
No 74
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=21.32 E-value=51 Score=26.28 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=20.8
Q ss_pred cceEEeeCccceEEEEeeCCCC-CCCCCCCc
Q 045532 121 TSMVLVGCPRCLMYVMLSEDDP-KCPKCKST 150 (173)
Q Consensus 121 ~~mV~~gC~~ClmYVMl~k~~P-~CP~Cks~ 150 (173)
..|..--|+.|-+.+-. ..| +||-|+.+
T Consensus 167 ~~~~~~~C~~CG~i~~g--~~p~~CP~C~~~ 195 (202)
T 1yuz_A 167 DDDKFHLCPICGYIHKG--EDFEKCPICFRP 195 (202)
T ss_dssp CSCCEEECSSSCCEEES--SCCSBCTTTCCB
T ss_pred CCCcEEEECCCCCEEcC--cCCCCCCCCCCC
Confidence 55778899999874333 455 99999964
No 75
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=20.76 E-value=45 Score=19.81 Aligned_cols=24 Identities=25% Similarity=0.679 Sum_probs=15.1
Q ss_pred CccceEEEEeeCCCCCCCCCCCccee
Q 045532 128 CPRCLMYVMLSEDDPKCPKCKSTVLL 153 (173)
Q Consensus 128 C~~ClmYVMl~k~~P~CP~Cks~vll 153 (173)
|..|+.-.+ +....||.|...+.|
T Consensus 32 ~~~Ci~~w~--~~~~~CP~Cr~~~~v 55 (55)
T 1iym_A 32 HAECVDMWL--GSHSTCPLCRLTVVV 55 (55)
T ss_dssp CTTHHHHTT--TTCCSCSSSCCCSCC
T ss_pred cHHHHHHHH--HcCCcCcCCCCEeEC
Confidence 445554221 457899999987643
No 76
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=20.59 E-value=15 Score=25.22 Aligned_cols=28 Identities=21% Similarity=0.669 Sum_probs=16.8
Q ss_pred CccceEEEEee-CCCCCCCCCCCcceecc
Q 045532 128 CPRCLMYVMLS-EDDPKCPKCKSTVLLDF 155 (173)
Q Consensus 128 C~~ClmYVMl~-k~~P~CP~Cks~vll~f 155 (173)
|..|+.-.+-. .....||.|...+...-
T Consensus 44 C~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 44 CKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp CSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred HHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 55566533222 33468999998875443
No 77
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=20.20 E-value=35 Score=21.14 Aligned_cols=13 Identities=38% Similarity=0.534 Sum_probs=9.8
Q ss_pred CCCCCCCCcceec
Q 045532 142 PKCPKCKSTVLLD 154 (173)
Q Consensus 142 P~CP~Cks~vll~ 154 (173)
-.||+|+..++++
T Consensus 10 ~~C~~C~~~i~~~ 22 (39)
T 2i5o_A 10 VPCEKCGSLVPVW 22 (39)
T ss_dssp EECTTTCCEEEGG
T ss_pred cccccccCcCCcc
Confidence 3699999887654
Done!