BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045533
(242 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 252 bits (644), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 127/245 (51%), Positives = 172/245 (70%), Gaps = 11/245 (4%)
Query: 1 KEIEDAIQKLCPIYIHSNSP--DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSL 58
KEIED ++ IY ++N DL+T S+ FRLLR+ G +SCDVF KFKD++G FKSS+
Sbjct: 91 KEIEDELEN---IYHNNNDAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSV 147
Query: 59 INDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQ-DHVTPKLAEQINHALYRP 117
+DV+G+L LY+A+Y+ V GE ILDEAI+FTT HL VA DH L+E+++HAL +
Sbjct: 148 TSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVASLDH---PLSEEVSHALKQS 204
Query: 118 LRKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDF 177
+R+ LPR+EAR+++S+ H NK LL FAK+DFN+ +WWKDLDF
Sbjct: 205 IRRGLPRVEARHYLSVYQDIESH--NKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDF 262
Query: 178 TTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLF 237
KLPYARDR+VE YFW G YFEPQY+ GRK++T++ + SI+DDTYD+Y T EEL +
Sbjct: 263 QRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPY 322
Query: 238 TEAVQ 242
T A++
Sbjct: 323 TNAIE 327
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 233 bits (593), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 118/243 (48%), Positives = 165/243 (67%), Gaps = 7/243 (2%)
Query: 1 KEIEDAIQKLCPIY-IHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLI 59
KEI+D + + IY +SN DL T +L FRLLRQ G IS ++F KF+D+ G+FK SL
Sbjct: 87 KEIDDILDQ---IYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLA 143
Query: 60 NDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLR 119
+DV G+L+LYEA+++ + IL++A+AF+T HL+S A H+ L EQ+ HAL + L
Sbjct: 144 SDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES--AAPHLKSPLREQVTHALEQCLH 201
Query: 120 KTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTT 179
K +PR+E R+F+S I + N LL FAKLDFN+ ++WWKDLDF T
Sbjct: 202 KGVPRVETRFFISSIYD-KEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVT 260
Query: 180 KLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTE 239
LPYARDR+VE YFW LG YFEPQY+ R ++ + ++SI+DDT+DAYGT++EL +T+
Sbjct: 261 TLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTD 320
Query: 240 AVQ 242
A+Q
Sbjct: 321 AIQ 323
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 233 bits (593), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 118/243 (48%), Positives = 165/243 (67%), Gaps = 7/243 (2%)
Query: 1 KEIEDAIQKLCPIY-IHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLI 59
KEI+D + + IY +SN DL T +L FRLLRQ G IS ++F KF+D+ G+FK SL
Sbjct: 85 KEIDDILDQ---IYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLA 141
Query: 60 NDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLR 119
+DV G+L+LYEA+++ + IL++A+AF+T HL+S A H+ L EQ+ HAL + L
Sbjct: 142 SDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES--AAPHLKSPLREQVTHALEQCLH 199
Query: 120 KTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTT 179
K +PR+E R+F+S I + N LL FAKLDFN+ ++WWKDLDF T
Sbjct: 200 KGVPRVETRFFISSIYD-KEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVT 258
Query: 180 KLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTE 239
LPYARDR+VE YFW LG YFEPQY+ R ++ + ++SI+DDT+DAYGT++EL +T+
Sbjct: 259 TLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTD 318
Query: 240 AVQ 242
A+Q
Sbjct: 319 AIQ 321
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 233 bits (593), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 118/243 (48%), Positives = 165/243 (67%), Gaps = 7/243 (2%)
Query: 1 KEIEDAIQKLCPIY-IHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLI 59
KEI+D + + IY +SN DL T +L FRLLRQ G IS ++F KF+D+ G+FK SL
Sbjct: 87 KEIDDILDQ---IYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLA 143
Query: 60 NDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLR 119
+DV G+L+LYEA+++ + IL++A+AF+T HL+S A H+ L EQ+ HAL + L
Sbjct: 144 SDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES--AAPHLKSPLREQVTHALEQCLH 201
Query: 120 KTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTT 179
K +PR+E R+F+S I + N LL FAKLDFN+ ++WWKDLDF T
Sbjct: 202 KGVPRVETRFFISSIYD-KEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVT 260
Query: 180 KLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTE 239
LPYARDR+VE YFW LG YFEPQY+ R ++ + ++SI+DDT+DAYGT++EL +T+
Sbjct: 261 TLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTD 320
Query: 240 AVQ 242
A+Q
Sbjct: 321 AIQ 323
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 232 bits (592), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 118/243 (48%), Positives = 165/243 (67%), Gaps = 7/243 (2%)
Query: 1 KEIEDAIQKLCPIY-IHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLI 59
KEI+D + + IY +SN DL T +L FRLLRQ G IS ++F KF+D+ G+FK SL
Sbjct: 85 KEIDDILDQ---IYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLA 141
Query: 60 NDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLR 119
+DV G+L+LYEA+++ + IL++A+AF+T HL+S A H+ L EQ+ HAL + L
Sbjct: 142 SDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES--AAPHLKSPLREQVTHALEQCLH 199
Query: 120 KTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTT 179
K +PR+E R+F+S I + N LL FAKLDFN+ ++WWKDLDF T
Sbjct: 200 KGVPRVETRFFISSIYD-KEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVT 258
Query: 180 KLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTE 239
LPYARDR+VE YFW LG YFEPQY+ R ++ + ++SI+DDT+DAYGT++EL +T+
Sbjct: 259 TLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTD 318
Query: 240 AVQ 242
A+Q
Sbjct: 319 AIQ 321
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 232 bits (592), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 118/243 (48%), Positives = 165/243 (67%), Gaps = 7/243 (2%)
Query: 1 KEIEDAIQKLCPIY-IHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLI 59
KEI+D + + IY +SN DL T +L FRLLRQ G IS ++F KF+D+ G+FK SL
Sbjct: 72 KEIDDILDQ---IYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLA 128
Query: 60 NDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLR 119
+DV G+L+LYEA+++ + IL++A+AF+T HL+S A H+ L EQ+ HAL + L
Sbjct: 129 SDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES--AAPHLKSPLREQVTHALEQCLH 186
Query: 120 KTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTT 179
K +PR+E R+F+S I + N LL FAKLDFN+ ++WWKDLDF T
Sbjct: 187 KGVPRVETRFFISSIYD-KEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVT 245
Query: 180 KLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTE 239
LPYARDR+VE YFW LG YFEPQY+ R ++ + ++SI+DDT+DAYGT++EL +T+
Sbjct: 246 TLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTD 305
Query: 240 AVQ 242
A+Q
Sbjct: 306 AIQ 308
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 231 bits (590), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 112/227 (49%), Positives = 156/227 (68%), Gaps = 3/227 (1%)
Query: 16 HSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLYEAAYMA 75
+SN DL T +L FRLLRQ G IS ++F KF+D+ G+FK SL +DV G+L+LYEA+++
Sbjct: 98 NSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVR 157
Query: 76 VRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMIN 135
+ IL++A+AF+T HL+S A H+ L EQ+ HAL + L K +PR+E R+F+S I
Sbjct: 158 THADDILEDALAFSTIHLES--AAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIY 215
Query: 136 STSDHLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWD 195
+ N LL FAKLDFN+ ++WWKDLDF T LPYARDR+VE YFW
Sbjct: 216 D-KEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWA 274
Query: 196 LGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQ 242
LG YFEPQY+ R ++ + ++SI+DDT+DAYGT++EL +T+A+Q
Sbjct: 275 LGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQ 321
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 231 bits (590), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 112/227 (49%), Positives = 156/227 (68%), Gaps = 3/227 (1%)
Query: 16 HSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLYEAAYMA 75
+SN DL T +L FRLLRQ G IS ++F KF+D+ G+FK SL +DV G+L+LYEA+++
Sbjct: 98 NSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVR 157
Query: 76 VRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMIN 135
+ IL++A+AF+T HL+S A H+ L EQ+ HAL + L K +PR+E R+F+S I
Sbjct: 158 THADDILEDALAFSTIHLES--AAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIY 215
Query: 136 STSDHLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWD 195
+ N LL FAKLDFN+ ++WWKDLDF T LPYARDR+VE YFW
Sbjct: 216 D-KEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWA 274
Query: 196 LGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQ 242
LG YFEPQY+ R ++ + ++SI+DDT+DAYGT++EL +T+A+Q
Sbjct: 275 LGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQ 321
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 227 bits (579), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 117/243 (48%), Positives = 164/243 (67%), Gaps = 7/243 (2%)
Query: 1 KEIEDAIQKLCPIY-IHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLI 59
KEI+D + + IY +SN DL T +L FRLLRQ G IS ++F KF+D+ G+FK SL
Sbjct: 85 KEIDDILDQ---IYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLA 141
Query: 60 NDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLR 119
+DV G+L+LYEA+++ + IL++A+AF+T HL+S A H+ L EQ+ HAL + L
Sbjct: 142 SDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES--AAPHLKSPLREQVTHALEQCLH 199
Query: 120 KTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTT 179
K +PR+E R+F+S I + N LL FAKLDFN+ ++WWKDLDF T
Sbjct: 200 KGVPRVETRFFISSIYD-KEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVT 258
Query: 180 KLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTE 239
LPYARDR+VE YF LG YFEPQY+ R ++ + ++SI+DDT+DAYGT++EL +T+
Sbjct: 259 TLPYARDRVVECYFSALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTD 318
Query: 240 AVQ 242
A+Q
Sbjct: 319 AIQ 321
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 227 bits (578), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 117/243 (48%), Positives = 164/243 (67%), Gaps = 7/243 (2%)
Query: 1 KEIEDAIQKLCPIY-IHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLI 59
KEI+D + + IY +SN DL T +L FRLLRQ G IS ++F KF+D+ G+FK SL
Sbjct: 85 KEIDDILDQ---IYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLA 141
Query: 60 NDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLR 119
+DV G+L+LYEA+++ + IL++A+AF+T HL+S A H+ L EQ+ HAL + L
Sbjct: 142 SDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES--AAPHLKSPLREQVTHALEQCLH 199
Query: 120 KTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTT 179
K +PR+E R+F+S I + N LL FAKLDFN+ ++WWKDLDF T
Sbjct: 200 KGVPRVETRFFISSIYD-KEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVT 258
Query: 180 KLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTE 239
LPYARDR+VE YF LG YFEPQY+ R ++ + ++SI+DDT+DAYGT++EL +T+
Sbjct: 259 TLPYARDRVVECYFSALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTD 318
Query: 240 AVQ 242
A+Q
Sbjct: 319 AIQ 321
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 192 bits (489), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 139/221 (62%), Gaps = 3/221 (1%)
Query: 22 LHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLYEAAYMAVRGEHI 81
LH +L FRLLRQ G ++S + F FKD G F +L D + +LSLYEA+++A+ GE+I
Sbjct: 108 LHATALSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALEGENI 167
Query: 82 LDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHL 141
LDEA F +HLK L +++ + +LAEQ+NHAL PL + RLEA + + D
Sbjct: 168 LDEARVFAISHLKEL-SEEKIGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDA- 225
Query: 142 HNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFE 201
N+ LL A LD+N+ ++WW+ + TKL +ARDRL+E ++W +G FE
Sbjct: 226 -NQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFE 284
Query: 202 PQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQ 242
PQY+ R + ++ ++IIDD YD YGTL+EL LFT+AV+
Sbjct: 285 PQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVE 325
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 167 bits (422), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 129/222 (58%), Gaps = 2/222 (0%)
Query: 21 DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLYEAAYMAVRGEH 80
DL++ SL FRLLR+ G +++ +VF+ FK++EG FK SL +D +G+L LYEA+++ GE
Sbjct: 97 DLYSTSLAFRLLREHGFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGET 156
Query: 81 ILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDH 140
L+ A F T L+ V + V L +I ++L PL + R A ++ D
Sbjct: 157 TLESAREFATKFLEEKVNEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDM 216
Query: 141 LHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTYF 200
N +L A LD NI +WW++ F KLP+ARDRLVE YFW+ G
Sbjct: 217 --NPVVLELAILDLNIVQAQFQEELKESFRWWRNTGFVEKLPFARDRLVECYFWNTGIIE 274
Query: 201 EPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQ 242
Q+A R +M ++N ++++IDD YD YGTLEEL FT+ ++
Sbjct: 275 PRQHASARIMMGKVNALITVIDDIYDVYGTLEELEQFTDLIR 316
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 157 bits (397), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 88/225 (39%), Positives = 127/225 (56%), Gaps = 5/225 (2%)
Query: 21 DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEG-RFKSSLINDVQGMLSLYEAAYMAVRGE 79
DL+ +L FRLLRQ G IS DVF FK+++G FK+SL D +GML LYEA+++ +GE
Sbjct: 100 DLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGE 159
Query: 80 HILDEAIAFTTTHLKSLV--AQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINST 137
L+ A F T L+ + + + L I H+L PL + +EAR+F+
Sbjct: 160 DTLELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARR 219
Query: 138 SDHLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLG 197
D N + AKL+FNI ++WW L F KLP+ RDRLVE +FW +G
Sbjct: 220 PDM--NPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVG 277
Query: 198 TYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQ 242
+ Q+ + RK+ + + ++IDD YD YGTL+EL LFT+ +
Sbjct: 278 MFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFK 322
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/223 (38%), Positives = 124/223 (55%), Gaps = 4/223 (1%)
Query: 21 DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGR-FKSSLINDVQGMLSLYEAAYMAVRGE 79
DL++ +L FRLLRQ +S +VF+ FK+ +G FK SL++D +G+L LYEA++++ +GE
Sbjct: 124 DLYSTALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGE 183
Query: 80 HILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSD 139
L A F T L+ V D L I AL P + AR F+ D
Sbjct: 184 ETLRLARDFATKFLQKRVLVDK-DINLLSSIERALELPTHWRVQMPNARSFIDAYKRRPD 242
Query: 140 HLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTY 199
N T+L AKLDFN+ ++WW +LP+ RDR+VE Y+W G
Sbjct: 243 M--NPTVLELAKLDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYYWTTGVV 300
Query: 200 FEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQ 242
Q+ + R ++T++N +++ IDD +D YGTLEEL LFT A+Q
Sbjct: 301 ERRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQLFTTAIQ 343
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 138 bits (348), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 130/244 (53%), Gaps = 26/244 (10%)
Query: 21 DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSS---LINDVQGMLSLYEAAYMAVR 77
DL T +L FRLLR +S +F+ FKD G+F S DV ML+LY A+ +A
Sbjct: 347 DLETTALGFRLLRLHRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFP 406
Query: 78 GEHILDEAIAFTTTHLKSLVAQDHVTP------KLAEQINHALYRPLRKTLPRLEARYFM 131
GE+ILDEA +F T +L+ + + + L+++I +AL ++PR+EA+ +
Sbjct: 407 GENILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYC 466
Query: 132 SMINS----------TSDHLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKL 181
+ +++N+ L KLDFNI T W++D + L
Sbjct: 467 QVYRPDYARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRD----SGL 522
Query: 182 P---YARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFT 238
P +AR+R +E YF +EPQYA R + T++ + +++DD YD YGTL+EL LFT
Sbjct: 523 PLFTFARERPLEFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFT 582
Query: 239 EAVQ 242
EAV+
Sbjct: 583 EAVR 586
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 126/244 (51%), Gaps = 24/244 (9%)
Query: 20 PDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQG---MLSLYEAAYMAV 76
PD+ ++ R+LR G +S DV + F+D+ G F L +G ML++ ++++
Sbjct: 318 PDIDDTAMGLRILRLHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSF 377
Query: 77 RGEHILDEAIAFTTTHLKSLVAQDHVTPKLA------EQINHALYRPLRKTLPRLEARYF 130
GE I++EA T +L++ + K A ++ +AL P K++PRLEAR +
Sbjct: 378 PGETIMEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSY 437
Query: 131 MSMINSTSD------------HLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFT 178
+ N D ++ N+ L AKLDFN +WWK FT
Sbjct: 438 IE--NYGPDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGFT 495
Query: 179 TKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFT 238
L + R+R+ E+YF FEP+++ R++ T+ + I+DD YDA+G+L++L LFT
Sbjct: 496 -DLNFTRERVTEIYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFT 554
Query: 239 EAVQ 242
E+V+
Sbjct: 555 ESVK 558
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 121 bits (303), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 121/240 (50%), Gaps = 23/240 (9%)
Query: 20 PDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLIN---DVQGMLSLYEAAYMAV 76
PDL+T +L R LR G +S DV FKD+ GRF SS +++ +++L+ A+ +A
Sbjct: 294 PDLNTTALGLRTLRMHGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAF 353
Query: 77 RGEHILDEAIAFTTTHLK-SLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMIN 135
E +D+A F +L+ +L + KL ++I + + P ++PRLEAR S I+
Sbjct: 354 PDERAMDDARKFAEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEAR---SYID 410
Query: 136 STSDH-------------LHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLP 182
S D+ L N L AKLDFNI T+WWK+ +
Sbjct: 411 SYDDNYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGM-ADIN 469
Query: 183 YARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQ 242
+ R R+ E+YF FEP+Y+ R T++ + + DD D + TL+EL FTE V+
Sbjct: 470 FTRHRVAEVYF--SSATFEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVK 527
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 103/225 (45%), Gaps = 22/225 (9%)
Query: 17 SNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLIND---VQGMLSLYEAAY 73
S+ D+ ++ FRLLRQ G ++S DVF+ F + EG F + V GM +LY A+
Sbjct: 290 SHVQDIDDTAMAFRLLRQHGYQVSADVFKNF-EKEGEFFCFVGQSNQAVTGMFNLYRASQ 348
Query: 74 MAVRGEHILDEAIAFTTTHL------KSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEA 127
+A E IL A F+ +L + L+ + + L +I AL P +LPR+E
Sbjct: 349 LAFPREEILKNAKEFSYNYLLEKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVET 408
Query: 128 RYFMSMINSTSD-----------HLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLD 176
R+++ +D +++N L AK D+N KW+++ +
Sbjct: 409 RFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEE-N 467
Query: 177 FTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSII 221
++ R L+E Y+ T FE + + R + + + ++ I
Sbjct: 468 RLSEWGVRRSELLECYYLAAATIFESERSHERMVWAKSSVLVKAI 512
>pdb|2EX3|B Chain B, Bacteriophage Phi29 Dna Polymerase Bound To Terminal
Protein
pdb|2EX3|D Chain D, Bacteriophage Phi29 Dna Polymerase Bound To Terminal
Protein
pdb|2EX3|F Chain F, Bacteriophage Phi29 Dna Polymerase Bound To Terminal
Protein
pdb|2EX3|H Chain H, Bacteriophage Phi29 Dna Polymerase Bound To Terminal
Protein
pdb|2EX3|J Chain J, Bacteriophage Phi29 Dna Polymerase Bound To Terminal
Protein
pdb|2EX3|L Chain L, Bacteriophage Phi29 Dna Polymerase Bound To Terminal
Protein
Length = 230
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 174 DLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEE 233
D DF+ Y+R R +E + +PQY + I QLN+I S ++ +++++ +E
Sbjct: 111 DFDFSKVRSYSRLRTLE---ESMEMRTDPQYYEKKMIQLQLNFIKS-VEGSFNSFDAADE 166
Query: 234 L 234
L
Sbjct: 167 L 167
>pdb|1T33|A Chain A, Structural Genomics, The Crystal Structure Of A Putative
Transcriptional Repressor (TetrACRR FAMILY) FROM
SALMONELLA Typhimurim Lt2
pdb|1T33|B Chain B, Structural Genomics, The Crystal Structure Of A Putative
Transcriptional Repressor (TetrACRR FAMILY) FROM
SALMONELLA Typhimurim Lt2
Length = 224
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 90 TTHLKSLVAQDHVTPKLAEQINH-ALYRPLRKTLPRLEARYFMSMINSTSDHLHNKTLLN 148
T +L ++++ ++P A Q+ H + PL L RL A Y N T LH LL
Sbjct: 115 TVNLSKFISREQLSPTSAYQLVHEQVIDPLHTHLTRLVAAYTGCDANDTRMILHTHALLG 174
>pdb|1R8K|A Chain A, Pdxa Protein; Nad-Dependent DehydrogenaseCARBOXYLASE;
Subunit Of Pyridoxine Phosphate Biosynthetic Protein
Pdxj- Pdxa [salmonella Typhimurium]
pdb|1R8K|B Chain B, Pdxa Protein; Nad-Dependent DehydrogenaseCARBOXYLASE;
Subunit Of Pyridoxine Phosphate Biosynthetic Protein
Pdxj- Pdxa [salmonella Typhimurium]
Length = 329
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 86 IAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMIN 135
+A TTHL D +TP L ++ L+ LR E R + +N
Sbjct: 160 VALATTHLPLRAIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLN 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,528,317
Number of Sequences: 62578
Number of extensions: 236818
Number of successful extensions: 767
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 703
Number of HSP's gapped (non-prelim): 25
length of query: 242
length of database: 14,973,337
effective HSP length: 96
effective length of query: 146
effective length of database: 8,965,849
effective search space: 1309013954
effective search space used: 1309013954
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)