Query 045533
Match_columns 242
No_of_seqs 130 out of 735
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 03:02:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045533.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045533hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00684 Terpene_cyclase_plant_ 100.0 3.2E-88 6.9E-93 658.9 23.2 240 1-242 74-317 (542)
2 PLN02279 ent-kaur-16-ene synth 100.0 2.1E-85 4.6E-90 658.3 21.6 237 1-242 291-550 (784)
3 PLN02592 ent-copalyl diphospha 100.0 2.7E-83 5.9E-88 642.0 23.3 238 1-242 331-598 (800)
4 PF01397 Terpene_synth: Terpen 100.0 2.5E-40 5.5E-45 283.0 12.0 114 1-114 67-183 (183)
5 PF03936 Terpene_synth_C: Terp 99.8 6E-19 1.3E-23 155.1 5.9 96 146-241 1-96 (270)
6 cd00868 Terpene_cyclase_C1 Ter 99.5 7.5E-14 1.6E-18 123.6 8.6 82 160-241 1-82 (284)
7 cd00687 Terpene_cyclase_nonpla 97.7 8.7E-05 1.9E-09 67.0 6.9 73 167-240 18-92 (303)
8 KOG3463 Transcription initiati 53.9 23 0.00049 28.2 4.0 37 65-112 3-39 (109)
9 COG5123 TOA2 Transcription ini 46.4 10 0.00022 29.9 1.0 42 62-114 1-42 (113)
10 PF11848 DUF3368: Domain of un 44.8 16 0.00034 24.4 1.7 25 24-48 20-44 (48)
11 PRK09177 xanthine-guanine phos 42.2 6.9 0.00015 32.5 -0.5 22 218-239 87-108 (156)
12 PF02268 TFIIA_gamma_N: Transc 42.0 28 0.00061 23.8 2.6 35 66-111 3-37 (49)
13 PF00156 Pribosyltran: Phospho 36.2 9.3 0.0002 29.2 -0.6 21 218-238 91-111 (125)
14 COG2976 Uncharacterized protei 31.1 36 0.00079 30.0 2.2 68 162-240 8-81 (207)
15 COG2236 Predicted phosphoribos 30.5 18 0.0004 31.4 0.3 22 218-239 90-111 (192)
16 TIGR00201 comF comF family pro 30.5 11 0.00023 32.1 -1.2 20 218-237 155-174 (190)
17 PRK11595 DNA utilization prote 29.0 12 0.00025 32.9 -1.3 20 218-237 190-209 (227)
18 COG1040 ComFC Predicted amidop 26.6 20 0.00044 31.6 -0.2 22 218-239 187-208 (225)
19 PF12626 PolyA_pol_arg_C: Poly 25.9 93 0.002 25.1 3.6 28 150-177 65-92 (124)
20 PF08373 RAP: RAP domain; Int 23.9 61 0.0013 21.7 1.9 27 22-48 17-43 (58)
21 PF03713 DUF305: Domain of unk 23.5 1.7E+02 0.0038 23.5 4.9 39 140-182 25-63 (151)
22 PF14165 YtzH: YtzH-like prote 23.5 51 0.0011 25.3 1.5 17 225-241 19-35 (87)
23 PRK05205 bifunctional pyrimidi 23.0 24 0.00051 29.6 -0.4 21 218-238 98-118 (176)
24 PF14164 YqzH: YqzH-like prote 22.5 55 0.0012 23.7 1.5 20 28-47 10-29 (64)
25 PRK02304 adenine phosphoribosy 22.5 28 0.0006 29.1 -0.1 22 218-239 117-138 (175)
26 PRK09162 hypoxanthine-guanine 22.0 21 0.00045 30.2 -0.9 53 64-119 8-67 (181)
27 TIGR01090 apt adenine phosphor 21.9 25 0.00055 29.2 -0.4 22 218-239 112-133 (169)
28 COG4403 LcnDR2 Lantibiotic mod 21.2 6.6E+02 0.014 27.2 9.4 118 21-163 714-831 (963)
29 PRK07322 adenine phosphoribosy 21.0 29 0.00063 29.3 -0.3 21 218-238 123-143 (178)
No 1
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=100.00 E-value=3.2e-88 Score=658.86 Aligned_cols=240 Identities=54% Similarity=0.938 Sum_probs=229.8
Q ss_pred ChHHHHHHHHhhhcCC---CCCCChHHHHHHHHHHHhcCcccchhhhcccccccccccccchhcHHHHHhHHhhhccCCC
Q 045533 1 KEIEDAIQKLCPIYIH---SNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLYEAAYMAVR 77 (242)
Q Consensus 1 ~EI~~~L~~i~~~~~~---~~~~Dl~~~AL~FRLLR~~Gy~VS~DvF~~F~d~~G~F~~~~~~d~~glL~LYeAS~l~~~ 77 (242)
+||+++|++||++|.. ....||++|||+|||||||||+||||||++|+|++|+|++++.+||+|||||||||||++|
T Consensus 74 ~EI~~~L~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~ 153 (542)
T cd00684 74 DEIKEILDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFP 153 (542)
T ss_pred HHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCC
Confidence 5999999999998521 1357999999999999999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHHHhHhhcC-CCCCchHHHHHHhcCCCccCChhhhHHHHhHHhhhccCCCcccHHHHHHHHhhhHH
Q 045533 78 GEHILDEAIAFTTTHLKSLVAQD-HVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNI 156 (242)
Q Consensus 78 gE~iLdeA~~fs~~~L~~~~~~~-~~~~~l~~~V~~aL~~P~~~~~~rle~r~yI~~Y~~~~~~~~n~~lLelAklDFn~ 156 (242)
||+|||||++||++||++++++| .++++|+++|++||++|||+++||+|||+||++|+ +++++|++||||||+|||+
T Consensus 154 gE~iLdeA~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~--~~~~~n~~lLelAkldfn~ 231 (542)
T cd00684 154 GEDILDEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYE--QEDDHNETLLELAKLDFNI 231 (542)
T ss_pred CcHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhC--CCccccHHHHHHHHHHHHH
Confidence 99999999999999999999842 26789999999999999999999999999999999 9999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHhhccccCCCchhHHHHHHHHHhHHHhhcccccCCCCHHHHHH
Q 045533 157 LLELHKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSL 236 (242)
Q Consensus 157 ~Q~~hq~EL~~lsrWw~~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tiiDD~yD~ygt~eEl~~ 236 (242)
||++||+||++++|||+++||.++|||+|+|++|||||++|++|||++|.+|+++||++++++++||+||+|||+|||+.
T Consensus 232 ~Q~~hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~~ 311 (542)
T cd00684 232 LQALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELEL 311 (542)
T ss_pred HhHhHHHHHHHHhHHHHhcCCcccCCcccchhHHHHHHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHHHH
Confidence 99999999999999999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhC
Q 045533 237 FTEAVQ 242 (242)
Q Consensus 237 ft~av~ 242 (242)
||+||+
T Consensus 312 ft~ai~ 317 (542)
T cd00684 312 FTEAVE 317 (542)
T ss_pred HHHHHH
Confidence 999985
No 2
>PLN02279 ent-kaur-16-ene synthase
Probab=100.00 E-value=2.1e-85 Score=658.30 Aligned_cols=237 Identities=28% Similarity=0.467 Sum_probs=222.8
Q ss_pred ChHHHHHHHHhhhcCCC---CCCChHHHHHHHHHHHhcCcccchhhhcccccccccccccc---hhcHHHHHhHHhhhcc
Q 045533 1 KEIEDAIQKLCPIYIHS---NSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSL---INDVQGMLSLYEAAYM 74 (242)
Q Consensus 1 ~EI~~~L~~i~~~~~~~---~~~Dl~~~AL~FRLLR~~Gy~VS~DvF~~F~d~~G~F~~~~---~~d~~glL~LYeAS~l 74 (242)
+||+++|+++|++|..+ ...|+++|||+|||||||||+||||||++|+|+ + |++++ .+|++||||||||||+
T Consensus 291 ~EI~~~L~~~~~~~~~~~~~~~~Dl~~tAl~FRLLR~hGy~VS~dvf~~F~~~-~-F~~~l~~~~~dv~gmL~LY~AS~l 368 (784)
T PLN02279 291 KEIKSVLDETYRYWLQGEEEIFLDLATCALAFRILRLNGYDVSSDPLKQFAED-H-FSDSLGGYLKDTGAVLELFRASQI 368 (784)
T ss_pred HHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHcCCCCChhHHhhcCCC-c-ccchhcccchhhHHHHHHHHHHhc
Confidence 49999999999975321 236999999999999999999999999999955 5 99887 5999999999999999
Q ss_pred CCCCccHHHHHHHHHHHHHHhHhhcCC-----CCCchHHHHHHhcCCCccCChhhhHHHHhHHhhhccCCCc--------
Q 045533 75 AVRGEHILDEAIAFTTTHLKSLVAQDH-----VTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHL-------- 141 (242)
Q Consensus 75 ~~~gE~iLdeA~~fs~~~L~~~~~~~~-----~~~~l~~~V~~aL~~P~~~~~~rle~r~yI~~Y~~~~~~~-------- 141 (242)
++|||+|||||+.||++||++.+++|. ++++|+++|+|||++|||+++||+|||+||++|+ +++.
T Consensus 369 ~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~~~~~L~~eV~~AL~~P~~~~l~RlEaR~yI~~Y~--~~~~~i~Kt~yr 446 (784)
T PLN02279 369 SYPDESLLEKQNSWTSHFLEQGLSNWSKTADRLRKYIKKEVEDALNFPYYANLERLANRRSIENYA--VDDTRILKTSYR 446 (784)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhcccccccccCccHHHHHHHHhcCchhcCccHHHHHHHHHHhc--cccchhcccccc
Confidence 999999999999999999999887533 4678999999999999999999999999999999 8775
Q ss_pred ----ccHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHhhccccCCCchhHHHHHHHHHhH
Q 045533 142 ----HNKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYI 217 (242)
Q Consensus 142 ----~n~~lLelAklDFn~~Q~~hq~EL~~lsrWw~~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l 217 (242)
+|+.||||||+|||+||++||+||++|+|||+++|| .+|||||||++|||||++|++||||||.+|++|||+++|
T Consensus 447 ~~~~~n~~lLeLAklDFN~~Qs~hq~EL~~l~rWwke~~L-~~L~faRdr~ve~Yf~aaa~~fEPe~S~aRi~~aK~~~L 525 (784)
T PLN02279 447 CSNICNQDFLKLAVEDFNFCQSIHREELKQLERWIVENRL-DKLKFARQKLAYCYFSAAATLFSPELSDARLSWAKNGVL 525 (784)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHhCeeHHhcCC-ccCCchhhHHHHHHHHHHHhhcCchhhHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999 699999999999999999999999999999999999999
Q ss_pred HHhhcccccCCCCHHHHHHHHHhhC
Q 045533 218 LSIIDDTYDAYGTLEELSLFTEAVQ 242 (242)
Q Consensus 218 ~tiiDD~yD~ygt~eEl~~ft~av~ 242 (242)
+|+|||+||+|||+|||++||+|||
T Consensus 526 ~tviDD~fD~yGt~eEL~~ft~aVe 550 (784)
T PLN02279 526 TTVVDDFFDVGGSEEELENLIQLVE 550 (784)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHH
Confidence 9999999999999999999999986
No 3
>PLN02592 ent-copalyl diphosphate synthase
Probab=100.00 E-value=2.7e-83 Score=642.03 Aligned_cols=238 Identities=26% Similarity=0.486 Sum_probs=221.2
Q ss_pred ChHHHHHHHHhhhcCC-C-------CCCChHHHHHHHHHHHhcCcccchhhhcccccccccccccc---hhcHHHHHhHH
Q 045533 1 KEIEDAIQKLCPIYIH-S-------NSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSL---INDVQGMLSLY 69 (242)
Q Consensus 1 ~EI~~~L~~i~~~~~~-~-------~~~Dl~~~AL~FRLLR~~Gy~VS~DvF~~F~d~~G~F~~~~---~~d~~glL~LY 69 (242)
+||+++|+++|++|.. + ...|+++|||+|||||||||+||||||++|++ +|+|++.+ .+|++||||||
T Consensus 331 ~EI~~iLd~iy~~w~~~g~~~a~~~~~~Dld~TALaFRLLRqhGy~VS~DvF~~F~~-~g~F~~~~ge~~~Dv~glL~LY 409 (800)
T PLN02592 331 PEIKECIDYVHRYWTENGICWARNSHVHDIDDTAMGFRLLRLHGHQVSADVFKHFEK-GGEFFCFAGQSTQAVTGMFNLY 409 (800)
T ss_pred HHHHHHHHHHHHHHhhcCcccccCCCcCCHHHHHHHHHHHHHcCCCCChHHHHhhcC-CCCccccccccccchHHHHHHH
Confidence 4999999999996421 1 13699999999999999999999999999996 89998654 89999999999
Q ss_pred hhhccCCCCccHHHHHHHHHHHHHHhHhhcCC------CCCchHHHHHHhcCCCccCChhhhHHHHhHHhhhccCCCcc-
Q 045533 70 EAAYMAVRGEHILDEAIAFTTTHLKSLVAQDH------VTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLH- 142 (242)
Q Consensus 70 eAS~l~~~gE~iLdeA~~fs~~~L~~~~~~~~------~~~~l~~~V~~aL~~P~~~~~~rle~r~yI~~Y~~~~~~~~- 142 (242)
|||||++|||.|||+|+.||+++|++.++.++ ++++|+++|+|||++|||+++||+|||+||++|+ +++++
T Consensus 410 eAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~l~d~~~~~~~L~~eV~~AL~~P~~~~l~RlEaR~yI~~Y~--~~~~~~ 487 (800)
T PLN02592 410 RASQVLFPGEKILENAKEFSSKFLREKQEANELLDKWIIMKDLPGEVGFALEIPWYASLPRVETRFYIEQYG--GEDDVW 487 (800)
T ss_pred HHHhcCCCcchHHHHHHHHHHHHHHHHhhccccccccccCccHHHHHHHhccChhhcCcchHHHHHHHHHhc--CCcccc
Confidence 99999999999999999999999999864323 3578999999999999999999999999999999 76654
Q ss_pred ------------cHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHhhccccCCCchhHHHH
Q 045533 143 ------------NKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKI 210 (242)
Q Consensus 143 ------------n~~lLelAklDFn~~Q~~hq~EL~~lsrWw~~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~ 210 (242)
|+.||||||+|||+||++||+||++++|||+++|| .+|||||||++|||||++|++|||+||.+|++
T Consensus 488 i~Kt~yr~~~~~n~~lLeLAklDFn~~Qs~hq~EL~~lsrWwke~~L-~~L~faRdr~ve~Yfwa~~~~feP~~s~~Ri~ 566 (800)
T PLN02592 488 IGKTLYRMPYVNNNEYLELAKLDYNNCQALHQLEWDNFQKWYEECNL-GEFGVSRSELLLAYFLAAASIFEPERSHERLA 566 (800)
T ss_pred hhhhhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhcCC-CcCCcchhHHHHHHHHHHHhhcCccchHHHHH
Confidence 99999999999999999999999999999999999 59999999999999999999999999999999
Q ss_pred HHHHHhHHHhhcccccCCCCHHHHHHHHHhhC
Q 045533 211 MTQLNYILSIIDDTYDAYGTLEELSLFTEAVQ 242 (242)
Q Consensus 211 ~aK~~~l~tiiDD~yD~ygt~eEl~~ft~av~ 242 (242)
|||+++|+|+|||+||+|||+|||++||+||+
T Consensus 567 ~aK~~~LitviDD~fD~yGt~eEl~~ft~~v~ 598 (800)
T PLN02592 567 WAKTTVLVEAISSYFNKETSSKQRRAFLHEFG 598 (800)
T ss_pred HHHHHHHHHhhcccccCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999984
No 4
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=100.00 E-value=2.5e-40 Score=283.04 Aligned_cols=114 Identities=51% Similarity=0.795 Sum_probs=96.8
Q ss_pred ChHHHHHHHHhhhcCCC--CCCChHHHHHHHHHHHhcCcccchhhhcccccccccccccchhcHHHHHhHHhhhccCCCC
Q 045533 1 KEIEDAIQKLCPIYIHS--NSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLYEAAYMAVRG 78 (242)
Q Consensus 1 ~EI~~~L~~i~~~~~~~--~~~Dl~~~AL~FRLLR~~Gy~VS~DvF~~F~d~~G~F~~~~~~d~~glL~LYeAS~l~~~g 78 (242)
+||+++|+++|+.+... ...||++|||+|||||||||+||||||++|+|++|+|+.++++||+|||+|||||||++||
T Consensus 67 ~EI~~~L~~i~~~~~~~~~~~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~g~F~~~l~~Dv~glLsLYeAS~l~~~g 146 (183)
T PF01397_consen 67 DEIKEILDSIYRSWDEDNEEIDDLYTTALRFRLLRQHGYYVSSDVFNKFKDEKGNFKESLSNDVKGLLSLYEASHLRFHG 146 (183)
T ss_dssp HHHHHHHHHHHHTTTTTSHTSSCHHHHHHHHHHHHHTT----GGGGGGGBETTSSBSGGGGGHHHHHHHHHHHHTT--TT
T ss_pred HHHHHHHHHHhhhccccccccCchhHHHHHHHHHHHcCCcccHHHHhCcccCCCccchhhhHhHHHHHHHHHHHHccCCC
Confidence 49999999999984211 2349999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHhHhhcCCCC-CchHHHHHHhc
Q 045533 79 EHILDEAIAFTTTHLKSLVAQDHVT-PKLAEQINHAL 114 (242)
Q Consensus 79 E~iLdeA~~fs~~~L~~~~~~~~~~-~~l~~~V~~aL 114 (242)
|+|||+|+.||++||+++++++..+ ++|+++|+|||
T Consensus 147 E~iLdeA~~Ft~~~L~~~~~~~~~~~~~L~~~V~~AL 183 (183)
T PF01397_consen 147 EDILDEARAFTTKHLKSLLSNLSIPDPHLAKEVKHAL 183 (183)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTCTTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHhC
Confidence 9999999999999999999854444 45999999997
No 5
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=99.76 E-value=6e-19 Score=155.10 Aligned_cols=96 Identities=33% Similarity=0.446 Sum_probs=92.3
Q ss_pred HHHHHHhhhHHHHHhhHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHhhccccCCCchhHHHHHHHHHhHHHhhcccc
Q 045533 146 LLNFAKLDFNILLELHKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTY 225 (242)
Q Consensus 146 lLelAklDFn~~Q~~hq~EL~~lsrWw~~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tiiDD~y 225 (242)
+|+|||+|||.||++||+|++++++||+++|+..+.+.+|+|++.++||.++.++.|..+..|+.+||.++++.++||+|
T Consensus 1 ~~~la~~~~~~~~~~~~~e~~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~aa~~~P~~~~~l~~~a~~~~w~f~~DD~~ 80 (270)
T PF03936_consen 1 YLELAKRDFPHCQALHQQELEEIDRWVKEFGLFDEDKAARQRFRQAYFGLLAARFYPDSSDELLAAADWMAWLFIFDDFF 80 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHTTSHHHHHHHHHHHHHHHHSGCGHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchhhcHhhHHHHHHHHHHHHHHHHHcCCccccccchhhhhHhHHhhhhheeCCCcHHHHHHHHhhchheeeeeecc
Confidence 68999999999999999999999999999999778888999999999999999999998889999999999999999999
Q ss_pred cCCCCHHHHHHHHHhh
Q 045533 226 DAYGTLEELSLFTEAV 241 (242)
Q Consensus 226 D~ygt~eEl~~ft~av 241 (242)
|..|+.++++.|+++|
T Consensus 81 D~~~~~~~~~~l~~~~ 96 (270)
T PF03936_consen 81 DDGGSAEELEALTDAV 96 (270)
T ss_dssp HTTSHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHH
Confidence 9999999999998876
No 6
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=99.49 E-value=7.5e-14 Score=123.60 Aligned_cols=82 Identities=63% Similarity=1.163 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHhhccccCCCchhHHHHHHHHHhHHHhhcccccCCCCHHHHHHHHH
Q 045533 160 LHKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTE 239 (242)
Q Consensus 160 ~hq~EL~~lsrWw~~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tiiDD~yD~ygt~eEl~~ft~ 239 (242)
.||+|++++++||+++||....+++|.+..++|+|+++++|+|+.+..|+++||.++++.++||.||.+|+.+|+..+++
T Consensus 1 ~~~~e~~~~~~W~~~~~l~~~~~~~r~~~~~~~~~~a~~~p~~~~~~~l~~~a~~~~~~f~~DD~~D~~~~~~~~~~~~~ 80 (284)
T cd00868 1 LHQEELKELSRWWKELGLQEKLPFARDRLVECYFWAAGSYFEPQYSEARIALAKTIALLTVIDDTYDDYGTLEELELFTE 80 (284)
T ss_pred CCHHHHHHHHHHHHHhCCcccCCchhhHhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHH
Confidence 49999999999999999976666999999999999999999999999999999999999999999999999999999988
Q ss_pred hh
Q 045533 240 AV 241 (242)
Q Consensus 240 av 241 (242)
++
T Consensus 81 ~~ 82 (284)
T cd00868 81 AV 82 (284)
T ss_pred HH
Confidence 76
No 7
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=97.71 E-value=8.7e-05 Score=66.96 Aligned_cols=73 Identities=22% Similarity=0.216 Sum_probs=63.1
Q ss_pred HHHHHHHhhcCCCCCCcchhHHHHHHHHhhccccCCCchhHHHHHH-HHHhHHHhhcccccCC-CCHHHHHHHHHh
Q 045533 167 ELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMT-QLNYILSIIDDTYDAY-GTLEELSLFTEA 240 (242)
Q Consensus 167 ~lsrWw~~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~a-K~~~l~tiiDD~yD~y-gt~eEl~~ft~a 240 (242)
+...|..+.|+. .=+.+|++.++++|+.++.++.|+.+..|+.++ +.++++.++||.||.. ++++++..+++.
T Consensus 18 ~~~~w~~~~~l~-~~~~~~~~~~~~~~~~~~a~~~P~a~~~~l~l~~~~~~w~f~~DD~~D~~~~~~~~~~~~~~~ 92 (303)
T cd00687 18 EYLEWVLEEMLI-PSEKAEKRFLSADFGDLAALFYPDADDERLMLAADLMAWLFVFDDLLDRDQKSPEDGEAGVTR 92 (303)
T ss_pred HHHHHHHHcCCC-CcchhHHHHhcCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcccCCccccCHHHHHHHHHH
Confidence 466788888662 445799999999999999999999999999666 9999999999999998 499999888764
No 8
>KOG3463 consensus Transcription initiation factor IIA, gamma subunit [Transcription]
Probab=53.89 E-value=23 Score=28.19 Aligned_cols=37 Identities=27% Similarity=0.455 Sum_probs=25.7
Q ss_pred HHhHHhhhccCCCCccHHHHHHHHHHHHHHhHhhcCCCCCchHHHHHH
Q 045533 65 MLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINH 112 (242)
Q Consensus 65 lL~LYeAS~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~~~l~~~V~~ 112 (242)
+.+|||.+-++- .|+ +-|.++++.|.++|.|+..|-.
T Consensus 3 ~YelYR~ttlG~----~L~-------~tLDe~v~~g~itp~la~~VL~ 39 (109)
T KOG3463|consen 3 YYELYRRTTLGN----ALQ-------KTLDELVSDGVITPSLAKKVLE 39 (109)
T ss_pred HHHHHHHhhHHH----HHH-------HHHHHHHHcCCCCHHHHHHHHH
Confidence 578999986653 233 3356677788888888877643
No 9
>COG5123 TOA2 Transcription initiation factor IIA, gamma subunit [Transcription]
Probab=46.38 E-value=10 Score=29.95 Aligned_cols=42 Identities=26% Similarity=0.454 Sum_probs=28.5
Q ss_pred HHHHHhHHhhhccCCCCccHHHHHHHHHHHHHHhHhhcCCCCCchHHHHHHhc
Q 045533 62 VQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHAL 114 (242)
Q Consensus 62 ~~glL~LYeAS~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~~~l~~~V~~aL 114 (242)
+.|+.+|||-|-++--=|++|| ++++.|.++|+|+..|-...
T Consensus 1 v~~yYElYRrs~ig~~L~dalD-----------~lis~g~isp~lam~vLetF 42 (113)
T COG5123 1 VPGYYELYRRSMIGKVLEDALD-----------ELISAGVISPNLAMHVLETF 42 (113)
T ss_pred CccHHHHHHHHHHHHHHHHHHH-----------HHHhcCCcCHHHHHHHHHHh
Confidence 3589999999877633344444 44566788888888775544
No 10
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=44.84 E-value=16 Score=24.44 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCcccchhhhcccc
Q 045533 24 TVSLHFRLLRQQGIKISCDVFEKFK 48 (242)
Q Consensus 24 ~~AL~FRLLR~~Gy~VS~DvF~~F~ 48 (242)
.+.=.+.-|+++|+++|+++++.+.
T Consensus 20 ~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 20 EVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred hHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4444556679999999999988765
No 11
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=42.23 E-value=6.9 Score=32.53 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=18.1
Q ss_pred HHhhcccccCCCCHHHHHHHHH
Q 045533 218 LSIIDDTYDAYGTLEELSLFTE 239 (242)
Q Consensus 218 ~tiiDD~yD~ygt~eEl~~ft~ 239 (242)
+.++||+.|.++|+.++.....
T Consensus 87 VLIVDDIiDTG~Tl~~v~~~l~ 108 (156)
T PRK09177 87 FLVVDDLVDTGGTARAVREMYP 108 (156)
T ss_pred EEEEeeeeCCHHHHHHHHHHHh
Confidence 4579999999999999876543
No 12
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=41.99 E-value=28 Score=23.82 Aligned_cols=35 Identities=29% Similarity=0.512 Sum_probs=22.7
Q ss_pred HhHHhhhccCCCCccHHHHHHHHHHHHHHhHhhcCCCCCchHHHHH
Q 045533 66 LSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQIN 111 (242)
Q Consensus 66 L~LYeAS~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~~~l~~~V~ 111 (242)
.+|||-|-++ .|. +.-|.+++.+|.++|.|+..|-
T Consensus 3 yelYR~stlG--------~aL---~dtLDeli~~~~I~p~La~kVL 37 (49)
T PF02268_consen 3 YELYRRSTLG--------IAL---TDTLDELIQEGKITPQLAMKVL 37 (49)
T ss_dssp -CGGGCSHHH--------HHH---HHHHHHHHHTTSS-HHHHHHHH
T ss_pred HHHHHcchHH--------HHH---HHHHHHHHHcCCCCHHHHHHHH
Confidence 4678877444 343 3446777888889998888774
No 13
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=36.23 E-value=9.3 Score=29.23 Aligned_cols=21 Identities=38% Similarity=0.471 Sum_probs=14.3
Q ss_pred HHhhcccccCCCCHHHHHHHH
Q 045533 218 LSIIDDTYDAYGTLEELSLFT 238 (242)
Q Consensus 218 ~tiiDD~yD~ygt~eEl~~ft 238 (242)
+.++||++|.++|+.++..+.
T Consensus 91 vliVDDvi~tG~Tl~~~~~~L 111 (125)
T PF00156_consen 91 VLIVDDVIDTGGTLKEAIELL 111 (125)
T ss_dssp EEEEEEEESSSHHHHHHHHHH
T ss_pred EEEEeeeEcccHHHHHHHHHH
Confidence 345788888888877765543
No 14
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.10 E-value=36 Score=30.04 Aligned_cols=68 Identities=18% Similarity=0.348 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHhhccccCCCchh------HHHHHHHHHhHHHhhcccccCCCCHHHHH
Q 045533 162 KEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAF------GRKIMTQLNYILSIIDDTYDAYGTLEELS 235 (242)
Q Consensus 162 q~EL~~lsrWw~~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~------~R~~~aK~~~l~tiiDD~yD~ygt~eEl~ 235 (242)
|+|+..|.+||++.|-. ++-....+++.+|.=+|-+ .+-.-++.-.+++.++ =+.--+..+++
T Consensus 8 ~qql~~ik~wwkeNGk~---------li~gviLg~~~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~--ak~~~~~~~~e 76 (207)
T COG2976 8 QQQLEAIKDWWKENGKA---------LIVGVILGLGGLFGWRYWQSHQVEQAQEASAQYQNAIKAVQ--AKKPKSIAAAE 76 (207)
T ss_pred HHHHHHHHHHHHHCCch---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCchhHHHHH
Confidence 78999999999999942 3334455566666544433 3444455555555553 11114555555
Q ss_pred HHHHh
Q 045533 236 LFTEA 240 (242)
Q Consensus 236 ~ft~a 240 (242)
.|..+
T Consensus 77 kf~~~ 81 (207)
T COG2976 77 KFVQA 81 (207)
T ss_pred HHHhh
Confidence 55543
No 15
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=30.55 E-value=18 Score=31.43 Aligned_cols=22 Identities=32% Similarity=0.187 Sum_probs=18.0
Q ss_pred HHhhcccccCCCCHHHHHHHHH
Q 045533 218 LSIIDDTYDAYGTLEELSLFTE 239 (242)
Q Consensus 218 ~tiiDD~yD~ygt~eEl~~ft~ 239 (242)
+.|+||+.|...|++....+.+
T Consensus 90 VLIVDDI~DTG~Tl~~a~~~l~ 111 (192)
T COG2236 90 VLIVDDIVDTGETLELALEELK 111 (192)
T ss_pred EEEEecccCchHhHHHHHHHHH
Confidence 4579999999999998776654
No 16
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=30.51 E-value=11 Score=32.06 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=16.8
Q ss_pred HHhhcccccCCCCHHHHHHH
Q 045533 218 LSIIDDTYDAYGTLEELSLF 237 (242)
Q Consensus 218 ~tiiDD~yD~ygt~eEl~~f 237 (242)
+.+|||+|..+.|+.|+...
T Consensus 155 vllvDDV~TTGaTl~~~~~~ 174 (190)
T TIGR00201 155 IVLVDDVVTTGATLHEIARL 174 (190)
T ss_pred EEEEeeeeccHHHHHHHHHH
Confidence 45699999999999998653
No 17
>PRK11595 DNA utilization protein GntX; Provisional
Probab=29.00 E-value=12 Score=32.91 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=17.0
Q ss_pred HHhhcccccCCCCHHHHHHH
Q 045533 218 LSIIDDTYDAYGTLEELSLF 237 (242)
Q Consensus 218 ~tiiDD~yD~ygt~eEl~~f 237 (242)
+.+|||++|.++|+.++...
T Consensus 190 vllvDDv~tTG~Tl~~~~~~ 209 (227)
T PRK11595 190 MAIVDDVVTTGSTVAEIAQL 209 (227)
T ss_pred EEEEeeeecchHHHHHHHHH
Confidence 55699999999999998654
No 18
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=26.57 E-value=20 Score=31.59 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=17.7
Q ss_pred HHhhcccccCCCCHHHHHHHHH
Q 045533 218 LSIIDDTYDAYGTLEELSLFTE 239 (242)
Q Consensus 218 ~tiiDD~yD~ygt~eEl~~ft~ 239 (242)
|.+|||+|..+.|+.|+.....
T Consensus 187 vlLvDDV~TTGaTl~~~~~~L~ 208 (225)
T COG1040 187 VLLVDDVYTTGATLKEAAKLLR 208 (225)
T ss_pred EEEEecccccHHHHHHHHHHHH
Confidence 3459999999999999876543
No 19
>PF12626 PolyA_pol_arg_C: Polymerase A arginine-rich C-terminus; PDB: 3AQN_A 3AQK_A 3AQM_B 3AQL_B.
Probab=25.88 E-value=93 Score=25.08 Aligned_cols=28 Identities=39% Similarity=0.742 Sum_probs=23.3
Q ss_pred HHhhhHHHHHhhHHHHHHHHHHHHhhcC
Q 045533 150 AKLDFNILLELHKEELNELTKWWKDLDF 177 (242)
Q Consensus 150 AklDFn~~Q~~hq~EL~~lsrWw~~~~l 177 (242)
|-.||=.+.+.--+++.+|-.||.+.--
T Consensus 65 AAyDFL~LR~~~ge~~~~l~~WW~~fq~ 92 (124)
T PF12626_consen 65 AAYDFLLLRAEAGEELSELAEWWTEFQE 92 (124)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHh
Confidence 6788988888889999999999998754
No 20
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=23.88 E-value=61 Score=21.69 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHhcCcccchhhhcccc
Q 045533 22 LHTVSLHFRLLRQQGIKISCDVFEKFK 48 (242)
Q Consensus 22 l~~~AL~FRLLR~~Gy~VS~DvF~~F~ 48 (242)
...++|.=|+|+..||.|-+=.|-.+.
T Consensus 17 ~g~t~lk~r~L~~~G~~Vi~Ip~~eW~ 43 (58)
T PF08373_consen 17 TGSTKLKHRHLKALGYKVISIPYYEWN 43 (58)
T ss_pred chHHHHHHHHHHHCCCEEEEecHHHHH
Confidence 467999999999999999775555443
No 21
>PF03713 DUF305: Domain of unknown function (DUF305); InterPro: IPR005183 A domain that is found in small family of bacterial secreted proteins with no known function. It ia also found in Paramecium bursaria Chlorella virus 1 (PBCV-1). This domain is short and found in one or two copies. The domain has a conserved HH motif that may be functionally important.; PDB: 2QF9_B 3BT5_A.
Probab=23.53 E-value=1.7e+02 Score=23.50 Aligned_cols=39 Identities=10% Similarity=0.282 Sum_probs=29.0
Q ss_pred CcccHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHhhcCCCCCC
Q 045533 140 HLHNKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFTTKLP 182 (242)
Q Consensus 140 ~~~n~~lLelAklDFn~~Q~~hq~EL~~lsrWw~~~~l~~~L~ 182 (242)
...||.+-.||. -+..-++.|+.++.+|.++.|.+..-+
T Consensus 25 ~~~~p~vr~lA~----~I~~~Q~~ei~~m~~wl~~~~~~~~~~ 63 (151)
T PF03713_consen 25 RGTDPEVRALAQ----QIIAAQQAEIAQMQAWLQSWGGPPPSP 63 (151)
T ss_dssp C---HHHHHHHH----HHHHHHHHHHHHHHHHHHHCT--SS-S
T ss_pred cCCCHHHHHHHH----HHHHHHHHHHHHHHHHhhhchhhhccc
Confidence 467999999998 777889999999999999999864443
No 22
>PF14165 YtzH: YtzH-like protein
Probab=23.47 E-value=51 Score=25.29 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=14.4
Q ss_pred ccCCCCHHHHHHHHHhh
Q 045533 225 YDAYGTLEELSLFTEAV 241 (242)
Q Consensus 225 yD~ygt~eEl~~ft~av 241 (242)
=|.+||..|++.+...|
T Consensus 19 ~DccgTvsEcEQieRLv 35 (87)
T PF14165_consen 19 LDCCGTVSECEQIERLV 35 (87)
T ss_pred hhccCcHHHHHHHHHHH
Confidence 47899999999887765
No 23
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=23.03 E-value=24 Score=29.63 Aligned_cols=21 Identities=14% Similarity=0.048 Sum_probs=17.6
Q ss_pred HHhhcccccCCCCHHHHHHHH
Q 045533 218 LSIIDDTYDAYGTLEELSLFT 238 (242)
Q Consensus 218 ~tiiDD~yD~ygt~eEl~~ft 238 (242)
+.++||+.|.++|+.++....
T Consensus 98 VLIVDDIidTG~Tl~~~~~~L 118 (176)
T PRK05205 98 VILVDDVLYTGRTIRAALDAL 118 (176)
T ss_pred EEEEecccCcHHHHHHHHHHH
Confidence 667999999999999876544
No 24
>PF14164 YqzH: YqzH-like protein
Probab=22.49 E-value=55 Score=23.67 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=15.8
Q ss_pred HHHHHHhcCcccchhhhccc
Q 045533 28 HFRLLRQQGIKISCDVFEKF 47 (242)
Q Consensus 28 ~FRLLR~~Gy~VS~DvF~~F 47 (242)
.=+-|||.||++.++.+...
T Consensus 10 i~~~l~QYg~d~~~~pls~~ 29 (64)
T PF14164_consen 10 IINCLRQYGYDVECMPLSDE 29 (64)
T ss_pred HHHHHHHhCCcccCCCCCHH
Confidence 34579999999999877654
No 25
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=22.48 E-value=28 Score=29.08 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=18.1
Q ss_pred HHhhcccccCCCCHHHHHHHHH
Q 045533 218 LSIIDDTYDAYGTLEELSLFTE 239 (242)
Q Consensus 218 ~tiiDD~yD~ygt~eEl~~ft~ 239 (242)
+.++||+++..+|+.++.....
T Consensus 117 VLIVDDivtTG~Tl~~~~~~l~ 138 (175)
T PRK02304 117 VLIVDDLLATGGTLEAAIKLLE 138 (175)
T ss_pred EEEEeCCccccHHHHHHHHHHH
Confidence 5579999999999998876543
No 26
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=22.03 E-value=21 Score=30.23 Aligned_cols=53 Identities=17% Similarity=0.133 Sum_probs=31.3
Q ss_pred HHHhHHhhhccCCCCccHHHHHHHHHHHHHHhHhhcCCC----C---CchHHHHHHhcCCCcc
Q 045533 64 GMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHV----T---PKLAEQINHALYRPLR 119 (242)
Q Consensus 64 glL~LYeAS~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~----~---~~l~~~V~~aL~~P~~ 119 (242)
.|++ ++ ..-+..++|.......+....+....++.. . -.++..+.++|..|..
T Consensus 8 ~~~~--~~-~~~~s~~~i~~~i~~la~~i~~~~~~~~~viV~i~~gg~~~A~~La~~l~~~~~ 67 (181)
T PRK09162 8 QVLA--EA-DCLVSAAEVEAAIDRMADEITADLADENPLVLCVMGGGLVFTGQLLPRLDFPLE 67 (181)
T ss_pred HHHh--hC-cEeecHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCCcHHHHHHHHHHcCCCcc
Confidence 3555 55 566677777777777776665542111111 1 2468888888887753
No 27
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=21.87 E-value=25 Score=29.19 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=17.9
Q ss_pred HHhhcccccCCCCHHHHHHHHH
Q 045533 218 LSIIDDTYDAYGTLEELSLFTE 239 (242)
Q Consensus 218 ~tiiDD~yD~ygt~eEl~~ft~ 239 (242)
+.++||+++.++|+.++.....
T Consensus 112 VLIVDDIitTG~Tl~~a~~~L~ 133 (169)
T TIGR01090 112 VLIVDDLLATGGTAEATDELIR 133 (169)
T ss_pred EEEEeccccchHHHHHHHHHHH
Confidence 4568999999999999876543
No 28
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=21.18 E-value=6.6e+02 Score=27.19 Aligned_cols=118 Identities=14% Similarity=0.149 Sum_probs=70.4
Q ss_pred ChHHHHHHHHHHHhcCcccchhhhcccccccccccccchhcHHHHHhHHhhhccCCCCccHHHHHHHHHHHHHHhHhhcC
Q 045533 21 DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQD 100 (242)
Q Consensus 21 Dl~~~AL~FRLLR~~Gy~VS~DvF~~F~d~~G~F~~~~~~d~~glL~LYeAS~l~~~gE~iLdeA~~fs~~~L~~~~~~~ 100 (242)
|-+.++=+-+.+| | +-.-|+ +++.-.|-..++.=+..|+++|++ +..+..|+-|+++++..++..+...
T Consensus 714 ~~~l~~~~~~~i~-~---le~~v~---~~~~~d~i~Gl~g~i~~L~~iYk~----~~epk~l~~ais~~~~l~~~~v~~d 782 (963)
T COG4403 714 DNYLIQSAENSIR-H---LEILVQ---KSKDPDFINGLAGVICVLVSIYKL----TDEPKFLELAISLGRILMEKIVGND 782 (963)
T ss_pred cHHHHHHHHHHHH-H---HHHHHh---hccCcchhhccHHHHHHHHHHHhh----ccchHHHHHHHHHHHHHHHHhhccc
Confidence 5566666666666 2 222232 344555666777778899999998 6667799999999999998877531
Q ss_pred CCCCchHHHHHHhcCCCccCChhhhHHHHhHHhhhccCCCcccHHHHHHHHhhhHHHHHhhHH
Q 045533 101 HVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNILLELHKE 163 (242)
Q Consensus 101 ~~~~~l~~~V~~aL~~P~~~~~~rle~r~yI~~Y~~~~~~~~n~~lLelAklDFn~~Q~~hq~ 163 (242)
..+ .| + .-+-....-+ +--.+..|+ ....+.+++.++.=+-.=|....+
T Consensus 783 ~s~-----~~--l--~gfshg~sgi-~~tL~~ly~----~T~e~~l~~~i~e~~~~Er~~f~~ 831 (963)
T COG4403 783 SSE-----TV--L--LGFSHGASGI-ILTLLKLYE----ATGEESLLKKIKELLSYERMKFSD 831 (963)
T ss_pred ccc-----ce--e--cccccchHHH-HHHHHHHHH----hcCcHHHHHHHHHHHHHHHHHHHH
Confidence 111 00 0 0111122221 122356677 345678888887665555544444
No 29
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=21.00 E-value=29 Score=29.27 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=17.7
Q ss_pred HHhhcccccCCCCHHHHHHHH
Q 045533 218 LSIIDDTYDAYGTLEELSLFT 238 (242)
Q Consensus 218 ~tiiDD~yD~ygt~eEl~~ft 238 (242)
+.+|||+++.++|+.++....
T Consensus 123 VLIVDDiitTG~Tl~aa~~~L 143 (178)
T PRK07322 123 VAIVDDVVSTGGTLTALERLV 143 (178)
T ss_pred EEEEeccccccHHHHHHHHHH
Confidence 567999999999999887554
Done!