Query 045535
Match_columns 100
No_of_seqs 104 out of 180
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 03:04:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045535.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045535hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2765 Predicted membrane pro 99.9 5.1E-28 1.1E-32 200.6 6.1 82 1-82 325-407 (416)
2 PF06027 DUF914: Eukaryotic pr 99.2 9.6E-11 2.1E-15 95.0 7.3 89 3-91 242-331 (334)
3 PF00892 EamA: EamA-like trans 97.1 0.0018 3.9E-08 41.5 5.5 63 2-64 62-125 (126)
4 PRK10532 threonine and homoser 97.1 0.0022 4.7E-08 49.3 6.7 74 2-75 217-291 (293)
5 PF08449 UAA: UAA transporter 97.1 0.0016 3.4E-08 50.5 5.8 65 4-68 235-300 (303)
6 PLN00411 nodulin MtN21 family 97.0 0.0023 4.9E-08 52.0 6.2 69 4-72 266-335 (358)
7 COG0697 RhaT Permeases of the 96.9 0.0045 9.8E-08 44.8 6.5 65 2-66 223-288 (292)
8 PRK11689 aromatic amino acid e 96.8 0.0042 9.1E-08 47.8 6.4 64 3-66 224-288 (295)
9 PF03151 TPT: Triose-phosphate 96.6 0.015 3.2E-07 39.7 7.2 62 4-65 91-153 (153)
10 TIGR00950 2A78 Carboxylate/Ami 96.4 0.014 3E-07 42.9 6.4 59 2-60 200-259 (260)
11 KOG4314 Predicted carbohydrate 96.2 0.003 6.5E-08 50.9 2.4 59 13-71 223-282 (290)
12 PRK11272 putative DMT superfam 95.6 0.036 7.8E-07 42.5 5.8 65 2-66 221-286 (292)
13 PF13536 EmrE: Multidrug resis 95.3 0.092 2E-06 35.2 6.4 62 5-67 46-108 (113)
14 TIGR00817 tpt Tpt phosphate/ph 94.6 0.028 6E-07 43.0 2.5 57 10-66 237-294 (302)
15 PRK02971 4-amino-4-deoxy-L-ara 94.0 0.36 7.9E-06 34.4 7.1 66 2-68 56-125 (129)
16 PRK11453 O-acetylserine/cystei 93.6 0.29 6.3E-06 37.7 6.4 66 2-67 223-289 (299)
17 PRK15430 putative chlorampheni 93.5 0.17 3.7E-06 38.9 5.0 65 3-67 222-287 (296)
18 PTZ00343 triose or hexose phos 93.3 0.22 4.8E-06 39.8 5.6 62 4-65 282-348 (350)
19 PF06027 DUF914: Eukaryotic pr 92.5 0.37 8.1E-06 39.5 5.9 63 5-67 90-153 (334)
20 PRK10452 multidrug efflux syst 91.8 1.2 2.7E-05 31.7 7.2 60 5-68 41-106 (120)
21 KOG1583 UDP-N-acetylglucosamin 91.7 0.098 2.1E-06 43.5 1.6 70 1-70 245-319 (330)
22 TIGR03340 phn_DUF6 phosphonate 91.5 0.4 8.6E-06 36.5 4.7 61 2-62 219-280 (281)
23 PF07857 DUF1632: CEO family ( 91.1 0.5 1.1E-05 37.6 5.1 60 5-64 59-133 (254)
24 PRK13499 rhamnose-proton sympo 91.0 0.5 1.1E-05 39.2 5.1 69 2-70 74-158 (345)
25 PF08449 UAA: UAA transporter 90.1 2.2 4.8E-05 33.0 7.8 68 5-72 75-143 (303)
26 PRK09541 emrE multidrug efflux 89.2 2.6 5.6E-05 29.4 6.8 34 35-68 72-106 (110)
27 TIGR00803 nst UDP-galactose tr 87.6 0.95 2E-05 33.3 4.0 47 15-61 173-220 (222)
28 TIGR00950 2A78 Carboxylate/Ami 86.9 3.8 8.3E-05 29.9 6.8 64 3-66 56-120 (260)
29 TIGR00817 tpt Tpt phosphate/ph 86.6 3.1 6.6E-05 31.8 6.4 57 8-64 79-136 (302)
30 PRK15051 4-amino-4-deoxy-L-ara 84.9 5.5 0.00012 27.3 6.5 61 5-65 48-109 (111)
31 COG0697 RhaT Permeases of the 80.8 14 0.00031 26.6 7.6 69 2-70 78-148 (292)
32 PRK15430 putative chlorampheni 76.1 14 0.0003 28.5 6.7 61 4-64 83-144 (296)
33 PF14147 Spore_YhaL: Sporulati 74.9 1 2.3E-05 28.7 0.2 43 45-88 2-44 (52)
34 KOG2234 Predicted UDP-galactos 73.7 6 0.00013 33.3 4.4 45 24-68 280-325 (345)
35 PRK11431 multidrug efflux syst 73.6 25 0.00054 24.3 6.9 32 36-67 72-104 (105)
36 TIGR03340 phn_DUF6 phosphonate 65.4 33 0.00073 26.0 6.6 60 7-66 76-136 (281)
37 PRK15020 ethanolamine utilizat 62.9 5.8 0.00013 32.1 2.1 14 3-16 234-247 (267)
38 PRK10650 multidrug efflux syst 60.4 56 0.0012 22.8 6.6 30 36-65 78-108 (109)
39 TIGR00688 rarD rarD protein. T 58.3 58 0.0013 24.1 6.7 58 6-64 82-141 (256)
40 TIGR00776 RhaT RhaT L-rhamnose 57.1 66 0.0014 25.0 7.1 63 4-66 62-137 (290)
41 KOG1580 UDP-galactose transpor 55.4 23 0.0005 29.6 4.4 55 14-68 261-316 (337)
42 PF04142 Nuc_sug_transp: Nucle 55.1 86 0.0019 24.2 7.4 65 6-70 29-94 (244)
43 PF06800 Sugar_transport: Suga 53.5 25 0.00055 28.3 4.3 69 2-70 46-127 (269)
44 KOG1442 GDP-fucose transporter 52.7 5.5 0.00012 33.5 0.4 38 25-62 133-171 (347)
45 KOG2766 Predicted membrane pro 39.7 39 0.00084 28.4 3.5 30 41-70 275-304 (336)
46 COG3238 Uncharacterized protei 38.8 82 0.0018 23.5 4.8 43 23-65 99-146 (150)
47 PF10639 UPF0546: Uncharacteri 37.8 95 0.0021 22.0 4.8 30 33-62 81-111 (113)
48 KOG1330 Sugar transporter/spin 37.2 54 0.0012 29.0 4.1 57 1-61 301-361 (493)
49 PRK11272 putative DMT superfam 37.2 1.8E+02 0.004 22.1 6.7 58 9-66 84-142 (292)
50 PF05653 Mg_trans_NIPA: Magnes 36.5 2E+02 0.0044 23.0 7.0 34 37-70 94-127 (300)
51 PF04142 Nuc_sug_transp: Nucle 36.4 54 0.0012 25.3 3.7 40 17-56 204-244 (244)
52 COG2510 Predicted membrane pro 35.4 70 0.0015 24.0 4.0 61 4-65 77-139 (140)
53 PF08507 COPI_assoc: COPI asso 34.8 46 0.00099 23.4 2.8 15 50-64 97-111 (136)
54 TIGR00915 2A0602 The (Largely 33.8 1.3E+02 0.0029 28.0 6.2 37 24-61 897-937 (1044)
55 PF15471 TMEM171: Transmembran 33.1 42 0.0009 28.1 2.7 24 47-70 161-186 (319)
56 MTH00213 ND6 NADH dehydrogenas 32.8 55 0.0012 26.5 3.2 42 46-87 53-96 (239)
57 PRK10555 aminoglycoside/multid 32.4 1.4E+02 0.003 27.8 6.2 42 22-64 894-939 (1037)
58 PF00873 ACR_tran: AcrB/AcrD/A 31.9 83 0.0018 28.8 4.6 37 21-57 886-926 (1021)
59 PRK11453 O-acetylserine/cystei 31.9 2.3E+02 0.005 21.7 6.5 55 11-65 76-132 (299)
60 PRK10503 multidrug efflux syst 31.5 1.4E+02 0.003 27.9 5.9 40 21-61 888-931 (1040)
61 COG1966 CstA Carbon starvation 31.3 1.3E+02 0.0027 27.3 5.5 58 6-63 144-204 (575)
62 KOG3762 Predicted transporter 30.3 41 0.00089 30.5 2.4 34 44-77 527-560 (618)
63 PTZ00343 triose or hexose phos 28.6 3.1E+02 0.0067 21.9 7.3 52 13-65 133-186 (350)
64 PRK09577 multidrug efflux prot 28.5 1.7E+02 0.0037 27.2 6.1 41 23-64 891-935 (1032)
65 PRK09579 multidrug efflux prot 28.1 1.8E+02 0.0039 27.1 6.1 42 20-62 867-912 (1017)
66 KOG4510 Permease of the drug/m 27.5 27 0.00058 29.5 0.7 37 29-65 288-325 (346)
67 COG2076 EmrE Membrane transpor 26.8 1E+02 0.0023 21.8 3.5 28 40-67 78-105 (106)
68 KOG4314 Predicted carbohydrate 26.3 1.1E+02 0.0025 25.0 4.0 61 6-66 65-126 (290)
69 TIGR00892 2A0113 monocarboxyla 25.4 29 0.00063 28.0 0.5 15 47-61 401-415 (455)
70 TIGR02163 napH_ ferredoxin-typ 24.3 82 0.0018 24.4 2.9 33 27-59 40-72 (255)
71 PF02554 CstA: Carbon starvati 23.5 2.6E+02 0.0055 24.0 5.8 54 9-62 147-203 (376)
72 PF02392 Ycf4: Ycf4; InterPro 22.6 92 0.002 24.1 2.8 25 5-29 15-39 (180)
73 PF03547 Mem_trans: Membrane t 21.9 1.5E+02 0.0033 23.2 4.0 32 27-58 105-138 (385)
74 PLN00411 nodulin MtN21 family 21.9 3.5E+02 0.0075 22.1 6.1 56 9-64 93-155 (358)
75 PF00893 Multi_Drug_Res: Small 21.3 2.5E+02 0.0054 18.3 4.9 14 41-54 78-91 (93)
76 PF04657 DUF606: Protein of un 20.5 2.9E+02 0.0062 19.6 4.8 37 25-61 96-137 (138)
77 TIGR00776 RhaT RhaT L-rhamnose 20.0 2.4E+02 0.0053 21.8 4.7 35 31-65 249-288 (290)
No 1
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.94 E-value=5.1e-28 Score=200.64 Aligned_cols=82 Identities=39% Similarity=0.679 Sum_probs=77.0
Q ss_pred ChhHHHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeeccCCccccccchhhh
Q 045535 1 LLDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIPDGALSRSKDASLE 79 (100)
Q Consensus 1 ll~tvlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~~~~~~~~~~~~~e 79 (100)
++|||+|||||++||+|||||++|+|||+||||||++|++ +|++++++|++||++|++||+++|+..+...+.++.+.|
T Consensus 325 ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~~~~~~~~~~~ 404 (416)
T KOG2765|consen 325 LIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSENSKKDPLMAIE 404 (416)
T ss_pred HHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccccccccchhee
Confidence 5899999999999999999999999999999999999998 899999999999999999999999988888888888766
Q ss_pred hhh
Q 045535 80 LET 82 (100)
Q Consensus 80 ~e~ 82 (100)
.+.
T Consensus 405 r~~ 407 (416)
T KOG2765|consen 405 REP 407 (416)
T ss_pred ecc
Confidence 654
No 2
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.15 E-value=9.6e-11 Score=95.01 Aligned_cols=89 Identities=19% Similarity=0.157 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeeccCCccccccchhhhhh
Q 045535 3 DNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIPDGALSRSKDASLELE 81 (100)
Q Consensus 3 ~tvlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~~~~~~~~~~~~~e~e 81 (100)
+.++.+.++...+.++||++.++||..+.|.|++.|++ +|..++|+|++|.++|++||++.|..+++++++++.+.++|
T Consensus 242 ~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~~~~~~~~~~ 321 (334)
T PF06027_consen 242 CLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEEARRNERKQE 321 (334)
T ss_pred HHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccccchhhcccc
Confidence 34555667777788999999999999999999999998 78899999999999999999999998888776655554555
Q ss_pred hccCCCCCCC
Q 045535 82 TENASSSEQE 91 (100)
Q Consensus 82 ~~~~~~~~~~ 91 (100)
.++..+.|+.
T Consensus 322 ~~~~~~~~~~ 331 (334)
T PF06027_consen 322 LEEGQDEDGP 331 (334)
T ss_pred cccccccccc
Confidence 5544444443
No 3
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=97.10 E-value=0.0018 Score=41.52 Aligned_cols=63 Identities=24% Similarity=0.327 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheee
Q 045535 2 LDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGIN 64 (100)
Q Consensus 2 l~tvlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in 64 (100)
+++.++-++|.+|+-.++|-.+++-..+...++++..++ .++.+++..++|.+++++|.++++
T Consensus 62 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 62 LGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred cceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 346778899999999999999999999999999999988 688999999999999999988765
No 4
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.07 E-value=0.0022 Score=49.34 Aligned_cols=74 Identities=20% Similarity=0.185 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeeccCCccccccc
Q 045535 2 LDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIPDGALSRSKD 75 (100)
Q Consensus 2 l~tvlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~~~~~~~~~~ 75 (100)
++++++=++|.+++=..+|..+++-..+.-+.|.+..++ .|..+++..++|+++|+.|-+...+..++|.|.||
T Consensus 217 ~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~~~~ 291 (293)
T PRK10532 217 LSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPKIKE 291 (293)
T ss_pred HHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 567888889999999999999999999999999999998 79999999999999999999999876655555444
No 5
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.05 E-value=0.0016 Score=50.46 Aligned_cols=65 Identities=17% Similarity=0.186 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeeccCC
Q 045535 4 NVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIPDG 68 (100)
Q Consensus 4 tvlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~~~ 68 (100)
..+..+++.+.+-.++|++.|+..++--+++++..++ .|+++++.+|+|.++|+.|..+-+...+
T Consensus 235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~ 300 (303)
T PF08449_consen 235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKK 300 (303)
T ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhc
Confidence 3556667777778999999999999999999999998 7999999999999999999999887443
No 6
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=96.96 E-value=0.0023 Score=52.03 Aligned_cols=69 Identities=10% Similarity=0.105 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeeccCCcccc
Q 045535 4 NVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIPDGALSR 72 (100)
Q Consensus 4 tvlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~~~~~~~ 72 (100)
+.++=++|.+++=...|..+++=+.+.-.++++..++ .|.++++..++|+++|+.|..++++...+|.|
T Consensus 266 t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~ 335 (358)
T PLN00411 266 TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEK 335 (358)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 3456678999999999999999999998899999998 79999999999999999999999975544433
No 7
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=96.87 E-value=0.0045 Score=44.81 Aligned_cols=65 Identities=23% Similarity=0.279 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeecc
Q 045535 2 LDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIP 66 (100)
Q Consensus 2 l~tvlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~ 66 (100)
+++.++-++|.+++-+.++..++.-..+.++.+++.+++ .+..++...++|+++++.|.++++..
T Consensus 223 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 223 FSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 455688999999999999999998888888888887887 79999999999999999999999985
No 8
>PRK11689 aromatic amino acid exporter; Provisional
Probab=96.82 E-value=0.0042 Score=47.83 Aligned_cols=64 Identities=14% Similarity=0.088 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeecc
Q 045535 3 DNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIP 66 (100)
Q Consensus 3 ~tvlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~ 66 (100)
.+.++-++|.+++=..+|..+++-..+.-.+|++..++ .|..+++..++|+++|+.|.++..+.
T Consensus 224 ~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~ 288 (295)
T PRK11689 224 AMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLA 288 (295)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence 57889999999999999999999999999999999998 79999999999999999998887653
No 9
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=96.60 E-value=0.015 Score=39.66 Aligned_cols=62 Identities=15% Similarity=0.113 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeec
Q 045535 4 NVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINI 65 (100)
Q Consensus 4 tvlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~ 65 (100)
.++-.+...+.+-.|||++.++.-.+-.++.++..++ .|.+.++..++|.++.++|++..++
T Consensus 91 ~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 91 AFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 3456677777888999999999999999999999998 7888999999999999999988764
No 10
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=96.38 E-value=0.014 Score=42.86 Aligned_cols=59 Identities=20% Similarity=0.360 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHh
Q 045535 2 LDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGF 60 (100)
Q Consensus 2 l~tvlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF 60 (100)
++++++.++|.+|+-.++|..+++=..+..+++++.+++ .|.+++...++|+++++.|.
T Consensus 200 ~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 200 IGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 467899999999999999999999999999999999997 78899999999999999875
No 11
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=96.25 E-value=0.003 Score=50.92 Aligned_cols=59 Identities=22% Similarity=0.232 Sum_probs=54.1
Q ss_pred HHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeeccCCccc
Q 045535 13 KAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIPDGALS 71 (100)
Q Consensus 13 ~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~~~~~~ 71 (100)
.++.|+.|++-++|+-..||..-..|.+ ++-.++.+++.|.+++.+||+++=++.++.+
T Consensus 223 ~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d~~e 282 (290)
T KOG4314|consen 223 FGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPEDKDE 282 (290)
T ss_pred ehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccchhh
Confidence 4678999999999999999999999999 6889999999999999999999999776654
No 12
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=95.62 E-value=0.036 Score=42.54 Aligned_cols=65 Identities=8% Similarity=0.123 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeecc
Q 045535 2 LDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIP 66 (100)
Q Consensus 2 l~tvlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~ 66 (100)
++++++-++|.+++=..+|-.+++=..+.-+.+++..++ .|..+++..++|+++++.|.++.++.
T Consensus 221 ~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~ 286 (292)
T PRK11272 221 FGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG 286 (292)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999999999999999999999998 68899999999999999999998763
No 13
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=95.32 E-value=0.092 Score=35.25 Aligned_cols=62 Identities=18% Similarity=0.166 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeeccC
Q 045535 5 VLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIPD 67 (100)
Q Consensus 5 vlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~~ 67 (100)
.++=.+|.+|+-.+.+ .+++..+++..++++.-.+ .++..+..-++|++++++|.++++++.
T Consensus 46 ~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 46 GVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred HHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 4566788889888875 7778888888889988887 788999999999999999999999854
No 14
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=94.55 E-value=0.028 Score=43.03 Aligned_cols=57 Identities=14% Similarity=0.021 Sum_probs=47.3
Q ss_pred HHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeecc
Q 045535 10 LWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIP 66 (100)
Q Consensus 10 lW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~ 66 (100)
+|.+++=.+||..+++-..+--..+++..++ .|.+.++..++|+++++.|..+.+..
T Consensus 237 ~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~ 294 (302)
T TIGR00817 237 VAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRV 294 (302)
T ss_pred HHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 3445566899999999977766677777887 79999999999999999999999873
No 15
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=93.98 E-value=0.36 Score=34.39 Aligned_cols=66 Identities=21% Similarity=0.197 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHhhhhhhhhh-HHHHHHH---HhCCCCcHHHHHHHHHHHHHhheeeccCC
Q 045535 2 LDNVLSDYLWAKAVLLTTATVATAGLTIQVP-LAAVVDS---LTGNAPKLLDYLGAVAVIIGFGGINIPDG 68 (100)
Q Consensus 2 l~tvlSDylW~~A~lLTSPLvaTlGLSLTIP-LAml~D~---l~~~~~s~~y~lGa~lV~~sF~~in~~~~ 68 (100)
+...+|=++|.+++=. -|+-..-.+...+| +..+.=+ +.|.+.++.-++|.++|++|.++++..++
T Consensus 56 ~~~~la~~~w~~aL~~-~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 56 AGYALSMLCWLKALRY-LPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred HHHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 3456677788887643 33333333322222 3333333 47889999999999999999999997544
No 16
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=93.60 E-value=0.29 Score=37.65 Aligned_cols=66 Identities=12% Similarity=0.074 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeeccC
Q 045535 2 LDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIPD 67 (100)
Q Consensus 2 l~tvlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~~ 67 (100)
+++++.=++|.+++=...|..+++=..+.-..|.+..++ .|..+++..++|+++|++|.++.++..
T Consensus 223 ~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 223 VATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence 567777888988887778877777555665677888887 799999999999999999998776633
No 17
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=93.50 E-value=0.17 Score=38.95 Aligned_cols=65 Identities=8% Similarity=-0.038 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeeccC
Q 045535 3 DNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIPD 67 (100)
Q Consensus 3 ~tvlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~~ 67 (100)
.+.++=++|.+|+=..+|-.+++=..+.-+++.+..++ .|..+++..++|.++|+++..++..++
T Consensus 222 ~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~ 287 (296)
T PRK15430 222 VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDA 287 (296)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35577889999999999999999999999999999987 799999999999999999988887643
No 18
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=93.34 E-value=0.22 Score=39.81 Aligned_cols=62 Identities=18% Similarity=0.203 Sum_probs=53.4
Q ss_pred HHHHHHHHHH----HHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeec
Q 045535 4 NVLSDYLWAK----AVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINI 65 (100)
Q Consensus 4 tvlSDylW~~----A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~ 65 (100)
+.+.=|+|.. ++-.+||+..++.-.+.=.++++..++ .|.+.++..++|++++++|.++.++
T Consensus 282 s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~ 348 (350)
T PTZ00343 282 SGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSL 348 (350)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhh
Confidence 4455566664 666799999999999999999999997 7899999999999999999998876
No 19
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=92.54 E-value=0.37 Score=39.51 Aligned_cols=63 Identities=19% Similarity=0.223 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeeccC
Q 045535 5 VLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIPD 67 (100)
Q Consensus 5 vlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~~ 67 (100)
+..+|++.+|--.||=..+++=-+.+||..|+--++ .++.+++.-++|.++.++|.+++....
T Consensus 90 v~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD 153 (334)
T PF06027_consen 90 VEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSD 153 (334)
T ss_pred HHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeec
Confidence 578999999999999999999999999999999998 688999999999999999999888744
No 20
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=91.82 E-value=1.2 Score=31.69 Aligned_cols=60 Identities=18% Similarity=0.159 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHH-----hhhhHHHhhhhhhhhhHHHHHHH-HhCCCCcHHHHHHHHHHHHHhheeeccCC
Q 045535 5 VLSDYLWAKAVL-----LTTATVATAGLTIQVPLAAVVDS-LTGNAPKLLDYLGAVAVIIGFGGINIPDG 68 (100)
Q Consensus 5 vlSDylW~~A~l-----LTSPLvaTlGLSLTIPLAml~D~-l~~~~~s~~y~lGa~lV~~sF~~in~~~~ 68 (100)
.+|=|+|.+|+- ..=|+.+.+|...+ .+..+ +.|.+.++.-++|-.++++|.+++|..++
T Consensus 41 ~~sf~~ls~al~~lplsiAYavw~GiG~v~~----~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 41 SLSYIFLSFAVKKIALGVAYALWEGIGILFI----TLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHH----HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence 345566666653 12233333443333 33444 48999999999999999999999998664
No 21
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=91.67 E-value=0.098 Score=43.53 Aligned_cols=70 Identities=26% Similarity=0.200 Sum_probs=53.7
Q ss_pred ChhHHHHHHHHHHHHH----hhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeeccCCcc
Q 045535 1 LLDNVLSDYLWAKAVL----LTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIPDGAL 70 (100)
Q Consensus 1 ll~tvlSDylW~~A~l----LTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~~~~~ 70 (100)
|+.+++.-|+=.+++. .|+.|++|+=+++-==++.+.-.+ ..+++++.-|+|+++|++|=++......+.
T Consensus 245 Ll~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~~~ 319 (330)
T KOG1583|consen 245 LLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWNHP 319 (330)
T ss_pred HHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 4678889999888887 466777777766666677777776 789999999999999999977765433333
No 22
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=91.48 E-value=0.4 Score=36.50 Aligned_cols=61 Identities=15% Similarity=-0.005 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhhe
Q 045535 2 LDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGG 62 (100)
Q Consensus 2 l~tvlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~ 62 (100)
+.+.++-++|.+++=...+-.++.-..++.+++.+..++ .|..+++..++|+++|++|.++
T Consensus 219 ~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 219 LMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 346677888999888888877777778889999999987 7999999999999999999764
No 23
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=91.14 E-value=0.5 Score=37.63 Aligned_cols=60 Identities=23% Similarity=0.404 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHH----HHhCC-----------CCcHHHHHHHHHHHHHhheee
Q 045535 5 VLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVD----SLTGN-----------APKLLDYLGAVAVIIGFGGIN 64 (100)
Q Consensus 5 vlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D----~l~~~-----------~~s~~y~lGa~lV~~sF~~in 64 (100)
.++-.+|+-+=+++=|.+-++||.+.+.+--..- +..|| ...++-++|.+++++|..+.-
T Consensus 59 mlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~ 133 (254)
T PF07857_consen 59 MLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFS 133 (254)
T ss_pred HhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHhee
Confidence 5677889998889999999999999999854433 33222 136888999999988876544
No 24
>PRK13499 rhamnose-proton symporter; Provisional
Probab=91.02 E-value=0.5 Score=39.16 Aligned_cols=69 Identities=19% Similarity=0.286 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH---------hCC-------CCcHHHHHHHHHHHHHhheeec
Q 045535 2 LDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL---------TGN-------APKLLDYLGAVAVIIGFGGINI 65 (100)
Q Consensus 2 l~tvlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l---------~~~-------~~s~~y~lGa~lV~~sF~~in~ 65 (100)
+..++|-.+|..+=++..+-+..+|+|++.|++.=...+ .|. +-...-++|.+++++|..+..+
T Consensus 74 ~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 74 LPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 346889999999999999999999999999998755443 121 1123457888888899998887
Q ss_pred cCCcc
Q 045535 66 PDGAL 70 (100)
Q Consensus 66 ~~~~~ 70 (100)
...+.
T Consensus 154 Ag~~k 158 (345)
T PRK13499 154 AGQLK 158 (345)
T ss_pred hhhhc
Confidence 44433
No 25
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=90.13 E-value=2.2 Score=33.02 Aligned_cols=68 Identities=16% Similarity=0.155 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeeccCCcccc
Q 045535 5 VLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIPDGALSR 72 (100)
Q Consensus 5 vlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~~~~~~~ 72 (100)
+++=++-..|.-..+.-+-++.=|..+...|+...+ .|+.++..-+++++++.+|.++.++.+....+
T Consensus 75 ~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~ 143 (303)
T PF08449_consen 75 FLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS 143 (303)
T ss_pred HHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc
Confidence 344445555555556556666677777777788876 79999999999999999999999986554443
No 26
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=89.15 E-value=2.6 Score=29.42 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=28.9
Q ss_pred HHHHHH-hCCCCcHHHHHHHHHHHHHhheeeccCC
Q 045535 35 AVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIPDG 68 (100)
Q Consensus 35 ml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~~~ 68 (100)
.+.+++ .|++.++.-++|..++++|.+++|..++
T Consensus 72 ~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~~ 106 (110)
T PRK09541 72 SLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLSR 106 (110)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 455555 7999999999999999999999998553
No 27
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=87.60 E-value=0.95 Score=33.28 Aligned_cols=47 Identities=17% Similarity=0.123 Sum_probs=41.5
Q ss_pred HHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhh
Q 045535 15 VLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFG 61 (100)
Q Consensus 15 ~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~ 61 (100)
+-..+|.+.++..++.+-++.+..++ .|++++...++|+.+|+.|-.
T Consensus 173 lk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~ 220 (222)
T TIGR00803 173 VRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATF 220 (222)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeE
Confidence 34788999999999999999999987 799999999999999998754
No 28
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=86.86 E-value=3.8 Score=29.94 Aligned_cols=64 Identities=19% Similarity=0.043 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeecc
Q 045535 3 DNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIP 66 (100)
Q Consensus 3 ~tvlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~ 66 (100)
+..+..+++.+|.-.+++-.+++-.+++--+.++...+ .|++.++..++|.++.++|.+++...
T Consensus 56 ~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~ 120 (260)
T TIGR00950 56 QIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSD 120 (260)
T ss_pred HHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccC
Confidence 45678889999999999988888877766666777776 67889999999999999998887653
No 29
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=86.58 E-value=3.1 Score=31.84 Aligned_cols=57 Identities=7% Similarity=0.046 Sum_probs=50.2
Q ss_pred HHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheee
Q 045535 8 DYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGIN 64 (100)
Q Consensus 8 DylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in 64 (100)
=.++.++.-.||+-.+++-.+++.++.++...+ .++.++...++|.++.++|.++..
T Consensus 79 ~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 79 HVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 357888999999999999999999999999987 688889889999999999997654
No 30
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=84.89 E-value=5.5 Score=27.33 Aligned_cols=61 Identities=13% Similarity=0.093 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeec
Q 045535 5 VLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINI 65 (100)
Q Consensus 5 vlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~ 65 (100)
.+|=++|.+++-.-..=++-.=.++.+-.+.+.-++ .|.+.++.-++|.++++.|.+++..
T Consensus 48 ~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 48 GLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 456667777665332222222223333445555555 7999999999999999999988764
No 31
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=80.80 E-value=14 Score=26.56 Aligned_cols=69 Identities=26% Similarity=0.237 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHH-H-hCCCCcHHHHHHHHHHHHHhheeeccCCcc
Q 045535 2 LDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDS-L-TGNAPKLLDYLGAVAVIIGFGGINIPDGAL 70 (100)
Q Consensus 2 l~tvlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~-l-~~~~~s~~y~lGa~lV~~sF~~in~~~~~~ 70 (100)
++.....++|..+.-.++.-.+++-.+..--+..+.-. + .++..++..++|.+..+.|.+++.......
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~ 148 (292)
T COG0697 78 LGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGG 148 (292)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcc
Confidence 34567788899998888888888777777667777774 5 488999999999999999999998865543
No 32
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=76.08 E-value=14 Score=28.48 Aligned_cols=61 Identities=18% Similarity=0.071 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheee
Q 045535 4 NVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGIN 64 (100)
Q Consensus 4 tvlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in 64 (100)
..+.=++|.+|+-.++...+++...++=.+.++.-++ .++..+...++|.++.++|.+++-
T Consensus 83 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 83 IGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 3455678888888888888888877554446677776 578899999999999999988764
No 33
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=74.87 E-value=1 Score=28.67 Aligned_cols=43 Identities=14% Similarity=0.117 Sum_probs=32.3
Q ss_pred CcHHHHHHHHHHHHHhheeeccCCccccccchhhhhhhccCCCC
Q 045535 45 PKLLDYLGAVAVIIGFGGINIPDGALSRSKDASLELETENASSS 88 (100)
Q Consensus 45 ~s~~y~lGa~lV~~sF~~in~~~~~~~~~~~~~~e~e~~~~~~~ 88 (100)
|.|+|++=+..++.||..+-. ...+.+.+..-+|+|++..+.|
T Consensus 2 PwWvY~vi~gI~~S~ym~v~t-~~eE~~~dq~~IEkEGevymeR 44 (52)
T PF14147_consen 2 PWWVYFVIAGIIFSGYMAVKT-AKEEREIDQEFIEKEGEVYMER 44 (52)
T ss_pred cchHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHhHHHHHHH
Confidence 578999999999999998875 4445556677778888765543
No 34
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=73.69 E-value=6 Score=33.27 Aligned_cols=45 Identities=18% Similarity=0.106 Sum_probs=35.6
Q ss_pred hhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeeccCC
Q 045535 24 TAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIPDG 68 (100)
Q Consensus 24 TlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~~~ 68 (100)
...-|++|=++.++-+. .+..++..+.+|+.+|+.|..+.+..-.
T Consensus 280 ~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~ 325 (345)
T KOG2234|consen 280 GFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPA 325 (345)
T ss_pred HHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCc
Confidence 34455667777777765 7899999999999999999999995333
No 35
>PRK11431 multidrug efflux system protein; Provisional
Probab=73.55 E-value=25 Score=24.34 Aligned_cols=32 Identities=13% Similarity=0.325 Sum_probs=26.9
Q ss_pred HHHHH-hCCCCcHHHHHHHHHHHHHhheeeccC
Q 045535 36 VVDSL-TGNAPKLLDYLGAVAVIIGFGGINIPD 67 (100)
Q Consensus 36 l~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~~ 67 (100)
+.+++ .|++.++.-++|-.++++|.+++|..+
T Consensus 72 lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~~ 104 (105)
T PRK11431 72 ITGIVLLGESASPARLLSLALIVAGIIGLKLST 104 (105)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhhccC
Confidence 44554 799999999999999999999998743
No 36
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=65.38 E-value=33 Score=26.00 Aligned_cols=60 Identities=17% Similarity=0.135 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeecc
Q 045535 7 SDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIP 66 (100)
Q Consensus 7 SDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~ 66 (100)
.-+++.+|.-.++.-.++.=...+.+++.+.-++ .|..++..-++|.++.+.|.+++...
T Consensus 76 ~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~ 136 (281)
T TIGR03340 76 YFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS 136 (281)
T ss_pred HHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 3445555555555555555455566667677776 68899999999999999999887653
No 37
>PRK15020 ethanolamine utilization cobalamin adenosyltransferase; Provisional
Probab=62.88 E-value=5.8 Score=32.12 Aligned_cols=14 Identities=29% Similarity=0.325 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHH
Q 045535 3 DNVLSDYLWAKAVL 16 (100)
Q Consensus 3 ~tvlSDylW~~A~l 16 (100)
-|-+|||||+.|++
T Consensus 234 LNRLSD~lfvla~~ 247 (267)
T PRK15020 234 LNRLSSTVYVMMIL 247 (267)
T ss_pred HHHHHHHHHHHHHH
Confidence 36799999999944
No 38
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=60.42 E-value=56 Score=22.84 Aligned_cols=30 Identities=17% Similarity=0.289 Sum_probs=25.3
Q ss_pred HHHHH-hCCCCcHHHHHHHHHHHHHhheeec
Q 045535 36 VVDSL-TGNAPKLLDYLGAVAVIIGFGGINI 65 (100)
Q Consensus 36 l~D~l-~~~~~s~~y~lGa~lV~~sF~~in~ 65 (100)
+..++ .|++.++.-++|-.+++.|.+++|.
T Consensus 78 ~ig~~~f~e~~~~~~~~gi~lIi~GVi~lkl 108 (109)
T PRK10650 78 AAGWILFGQRLNRKGWIGLVLLLAGMVMIKL 108 (109)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 44554 7889999999999999999999885
No 39
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=58.34 E-value=58 Score=24.14 Aligned_cols=58 Identities=12% Similarity=0.149 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhhhhhhH-HHHHHHH-hCCCCcHHHHHHHHHHHHHhheee
Q 045535 6 LSDYLWAKAVLLTTATVATAGLTIQVPL-AAVVDSL-TGNAPKLLDYLGAVAVIIGFGGIN 64 (100)
Q Consensus 6 lSDylW~~A~lLTSPLvaTlGLSLTIPL-Aml~D~l-~~~~~s~~y~lGa~lV~~sF~~in 64 (100)
+.=+++.+|+-.+++-.+++-.. +-|+ .++.-.+ .|++.+...++|.++.++|.+++.
T Consensus 82 ~~~~~~~~a~~~~~~~~a~~l~~-~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 82 FNWWLFIWAVNNGSSLEVSLGYL-INPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHcchHHHHHHHHH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 44567888888888777777655 4565 5555555 688999999999999998877664
No 40
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=57.07 E-value=66 Score=24.99 Aligned_cols=63 Identities=17% Similarity=0.295 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHH--------H-hCCCCcHHH----HHHHHHHHHHhheeecc
Q 045535 4 NVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDS--------L-TGNAPKLLD----YLGAVAVIIGFGGINIP 66 (100)
Q Consensus 4 tvlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~--------l-~~~~~s~~y----~lGa~lV~~sF~~in~~ 66 (100)
++++-.+|..+-+.--+-+..+|++.+.|+.-.... + .|...+..- ++|.+++++|.+++...
T Consensus 62 g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~ 137 (290)
T TIGR00776 62 GLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS 137 (290)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence 566777788777777777888888888777663332 2 244444434 88999999999988664
No 41
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=55.35 E-value=23 Score=29.55 Aligned_cols=55 Identities=15% Similarity=0.067 Sum_probs=36.2
Q ss_pred HHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeeccCC
Q 045535 14 AVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIPDG 68 (100)
Q Consensus 14 A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~~~ 68 (100)
-+---+||.-++=-+--==+.+++..+ .+++.+.+.|+|+.+|+.+...=...++
T Consensus 261 tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK 316 (337)
T KOG1580|consen 261 TVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGK 316 (337)
T ss_pred HHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCC
Confidence 333344554333323233356677776 7999999999999999999876555444
No 42
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=55.06 E-value=86 Score=24.22 Aligned_cols=65 Identities=9% Similarity=0.066 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeeccCCcc
Q 045535 6 LSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIPDGAL 70 (100)
Q Consensus 6 lSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~~~~~ 70 (100)
+.+.+-..+.-...|.+--+=-.+-|+.+.+.=.+ .||..+...|++-.++++|..++.......
T Consensus 29 ~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 29 IQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 44556667777888888888888889988888776 799999999999999999999999866555
No 43
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=53.49 E-value=25 Score=28.35 Aligned_cols=69 Identities=19% Similarity=0.287 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH---------hCC-CCcHHHHHH---HHHHHHHhheeeccCC
Q 045535 2 LDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL---------TGN-APKLLDYLG---AVAVIIGFGGINIPDG 68 (100)
Q Consensus 2 l~tvlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l---------~~~-~~s~~y~lG---a~lV~~sF~~in~~~~ 68 (100)
+..++|-.+|+.+=...--=..-+|.|-|.|++-=...+ .|. .....+++| -+++++|..+.++.++
T Consensus 46 ~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~ 125 (269)
T PF06800_consen 46 IVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDK 125 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccc
Confidence 356899999999988888778899999999987433322 233 222334444 4555667766666444
Q ss_pred cc
Q 045535 69 AL 70 (100)
Q Consensus 69 ~~ 70 (100)
++
T Consensus 126 ~~ 127 (269)
T PF06800_consen 126 KS 127 (269)
T ss_pred cc
Confidence 44
No 44
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.70 E-value=5.5 Score=33.55 Aligned_cols=38 Identities=13% Similarity=0.312 Sum_probs=33.6
Q ss_pred hhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhhe
Q 045535 25 AGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGG 62 (100)
Q Consensus 25 lGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~ 62 (100)
+|=|+|.|+.++.-++ .++..+..-+.|+.+|++||.+
T Consensus 133 vgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~l 171 (347)
T KOG1442|consen 133 VGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGL 171 (347)
T ss_pred eccchhhhHHHHhHHhhcccccccccceeehhheehhee
Confidence 5779999999999998 6888888888999999999965
No 45
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=39.70 E-value=39 Score=28.45 Aligned_cols=30 Identities=13% Similarity=0.090 Sum_probs=24.5
Q ss_pred hCCCCcHHHHHHHHHHHHHhheeeccCCcc
Q 045535 41 TGNAPKLLDYLGAVAVIIGFGGINIPDGAL 70 (100)
Q Consensus 41 ~~~~~s~~y~lGa~lV~~sF~~in~~~~~~ 70 (100)
+|-+..|+|++.=..+..||++....++++
T Consensus 275 FgYhv~wLY~laF~~i~~GliiYs~re~~~ 304 (336)
T KOG2766|consen 275 FGYHVDWLYFLAFATIATGLIIYSTREKDE 304 (336)
T ss_pred HhcchhhhhHHHHHHHHHhhEEeeccccCc
Confidence 477799999999999999999996544433
No 46
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.77 E-value=82 Score=23.52 Aligned_cols=43 Identities=19% Similarity=0.199 Sum_probs=31.8
Q ss_pred HhhhhhhhhhHHHHHHHH--hC---CCCcHHHHHHHHHHHHHhheeec
Q 045535 23 ATAGLTIQVPLAAVVDSL--TG---NAPKLLDYLGAVAVIIGFGGINI 65 (100)
Q Consensus 23 aTlGLSLTIPLAml~D~l--~~---~~~s~~y~lGa~lV~~sF~~in~ 65 (100)
.++.++-++=.+++.|.+ +| +++++.-++|++++++|.+++..
T Consensus 99 ~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~ 146 (150)
T COG3238 99 IALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR 146 (150)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence 344555667778888987 33 46799999999999999555443
No 47
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=37.80 E-value=95 Score=22.04 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=22.0
Q ss_pred HHHHHHHHhCC-CCcHHHHHHHHHHHHHhhe
Q 045535 33 LAAVVDSLTGN-APKLLDYLGAVAVIIGFGG 62 (100)
Q Consensus 33 LAml~D~l~~~-~~s~~y~lGa~lV~~sF~~ 62 (100)
++.+.+++.|+ ..+..-++|.++|+.|..+
T Consensus 81 fT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 81 FTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 34667776444 4577789999999998754
No 48
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=37.23 E-value=54 Score=29.01 Aligned_cols=57 Identities=18% Similarity=0.301 Sum_probs=37.7
Q ss_pred ChhHHHHHH----HHHHHHHhhhhHHHhhhhhhhhhHHHHHHHHhCCCCcHHHHHHHHHHHHHhh
Q 045535 1 LLDNVLSDY----LWAKAVLLTTATVATAGLTIQVPLAAVVDSLTGNAPKLLDYLGAVAVIIGFG 61 (100)
Q Consensus 1 ll~tvlSDy----lW~~A~lLTSPLvaTlGLSLTIPLAml~D~l~~~~~s~~y~lGa~lV~~sF~ 61 (100)
++|+.+||+ ++-.....-+++++++|..++||+=.+.=... ..-++.|-+++++|-.
T Consensus 301 l~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~----~~s~~~~~il~~~g~~ 361 (493)
T KOG1330|consen 301 LFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFT----SSSMIFGLILFLVGET 361 (493)
T ss_pred eehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhh----hHHHHHHHHHHHHHHH
Confidence 468899998 56557778899999999888888654433321 2234555555555543
No 49
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=37.22 E-value=1.8e+02 Score=22.14 Aligned_cols=58 Identities=16% Similarity=0.114 Sum_probs=36.8
Q ss_pred HHHHHHH-HhhhhHHHhhhhhhhhhHHHHHHHHhCCCCcHHHHHHHHHHHHHhheeecc
Q 045535 9 YLWAKAV-LLTTATVATAGLTIQVPLAAVVDSLTGNAPKLLDYLGAVAVIIGFGGINIP 66 (100)
Q Consensus 9 ylW~~A~-lLTSPLvaTlGLSLTIPLAml~D~l~~~~~s~~y~lGa~lV~~sF~~in~~ 66 (100)
++...+. ..+++-.+++-.+++=-+.++.=.+.|++++..-++|.++-++|..+++..
T Consensus 84 ~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~~~e~~~~~~~~~~~la~~Gv~ll~~~ 142 (292)
T PRK11272 84 GMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRLFGIRTRKLEWLGIAIGLAGIVLLNSG 142 (292)
T ss_pred HHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHhHHHHhcC
Confidence 4444454 344444455555554334443334567888999999999999998888653
No 50
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=36.47 E-value=2e+02 Score=22.97 Aligned_cols=34 Identities=21% Similarity=0.129 Sum_probs=25.4
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHhheeeccCCcc
Q 045535 37 VDSLTGNAPKLLDYLGAVAVIIGFGGINIPDGAL 70 (100)
Q Consensus 37 ~D~l~~~~~s~~y~lGa~lV~~sF~~in~~~~~~ 70 (100)
+-++.|.+.+..-++|.+++++|-.++-.-+.++
T Consensus 94 a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~ 127 (300)
T PF05653_consen 94 ARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKE 127 (300)
T ss_pred hHHHhcccchHhHHhhHHHHHhhheeeEEeCCCC
Confidence 3344688889999999999999987766544443
No 51
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=36.35 E-value=54 Score=25.35 Aligned_cols=40 Identities=30% Similarity=0.346 Sum_probs=34.4
Q ss_pred hhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHH
Q 045535 17 LTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAV 56 (100)
Q Consensus 17 LTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV 56 (100)
..+-.+-+.+.+.+|-++.+..++ .|.+++..+++|+.+|
T Consensus 204 yadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 204 YADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 455667788899999999999997 7999999999999865
No 52
>COG2510 Predicted membrane protein [Function unknown]
Probab=35.40 E-value=70 Score=24.02 Aligned_cols=61 Identities=25% Similarity=0.314 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHh-hhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeec
Q 045535 4 NVLSDYLWAKAVLL-TTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINI 65 (100)
Q Consensus 4 tvlSDylW~~A~lL-TSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~ 65 (100)
+.+|=+|+.+|.-. .-|.|+-+. +.+.-++.+--++ .|..++...++|++++.+|-+++.+
T Consensus 77 ~glswl~Yf~ALk~G~as~VvPld-k~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 77 GGLSWLLYFRALKKGKASRVVPLD-KTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHHHHHHHhcCCcceEEEcc-cccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 44566666666542 111222111 1122233444455 6889999999999999999998875
No 53
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=34.85 E-value=46 Score=23.36 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhheee
Q 045535 50 YLGAVAVIIGFGGIN 64 (100)
Q Consensus 50 ~lGa~lV~~sF~~in 64 (100)
.+|.+.++++++..+
T Consensus 97 ~~G~~~i~l~~~~~~ 111 (136)
T PF08507_consen 97 LVGVIYIILGFFCPI 111 (136)
T ss_pred HHHHHHHHHHHHcCC
Confidence 344444444444433
No 54
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=33.75 E-value=1.3e+02 Score=28.00 Aligned_cols=37 Identities=22% Similarity=0.375 Sum_probs=26.8
Q ss_pred hhhhhhhhhHHHHHHHH----hCCCCcHHHHHHHHHHHHHhh
Q 045535 24 TAGLTIQVPLAAVVDSL----TGNAPKLLDYLGAVAVIIGFG 61 (100)
Q Consensus 24 TlGLSLTIPLAml~D~l----~~~~~s~~y~lGa~lV~~sF~ 61 (100)
.+-..++||+|+++=++ .|.+++.+.++|-+.. +|.+
T Consensus 897 pliI~~~iPlsl~G~~~~l~~~g~~l~~~sl~G~i~l-~Giv 937 (1044)
T TIGR00915 897 PVSVMLVVPLGIIGALLATSLRGLSNDVYFQVGLLTT-IGLS 937 (1044)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHH-HHHH
Confidence 44445699999999876 5889999988776554 4443
No 55
>PF15471 TMEM171: Transmembrane protein family 171
Probab=33.07 E-value=42 Score=28.14 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHH--hheeeccCCcc
Q 045535 47 LLDYLGAVAVIIG--FGGINIPDGAL 70 (100)
Q Consensus 47 ~~y~lGa~lV~~s--F~~in~~~~~~ 70 (100)
.+.++|.+.|++| |++|.+-.++.
T Consensus 161 slQImGPlIVl~GLCFFVVAHvKKr~ 186 (319)
T PF15471_consen 161 SLQIMGPLIVLVGLCFFVVAHVKKRN 186 (319)
T ss_pred ehhhhhhHHHHHhhhhhheeeeeecc
Confidence 5689999999988 56666544333
No 56
>MTH00213 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=32.78 E-value=55 Score=26.49 Aligned_cols=42 Identities=24% Similarity=0.274 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHHHHhh--eeeccCCccccccchhhhhhhccCCC
Q 045535 46 KLLDYLGAVAVIIGFG--GINIPDGALSRSKDASLELETENASS 87 (100)
Q Consensus 46 s~~y~lGa~lV~~sF~--~in~~~~~~~~~~~~~~e~e~~~~~~ 87 (100)
..+-|.||+.|+.-|+ ++|...+.+.+.+....+.+.++..+
T Consensus 53 QILVYVGAIaVLFLFVIMLLn~g~~~~~~~~~~~~~~~~~~~~~ 96 (239)
T MTH00213 53 FLIVYVGAICIIFLFVIMMIPGGAKGFKPTKGNKKEKERKKGEE 96 (239)
T ss_pred HHHHHHhHHHHHHHHHHHhhcccccccccccCCCccccccCCCC
Confidence 3456899999999887 56775555555444433444444433
No 57
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=32.44 E-value=1.4e+02 Score=27.81 Aligned_cols=42 Identities=21% Similarity=0.340 Sum_probs=28.4
Q ss_pred HHhhhhhhhhhHHHHHHHH----hCCCCcHHHHHHHHHHHHHhheee
Q 045535 22 VATAGLTIQVPLAAVVDSL----TGNAPKLLDYLGAVAVIIGFGGIN 64 (100)
Q Consensus 22 vaTlGLSLTIPLAml~D~l----~~~~~s~~y~lGa~lV~~sF~~in 64 (100)
...+-..++||+|+++=++ .|.+++.+.++|-+ +++|.++=|
T Consensus 894 ~~pliI~~~IPlal~G~l~~L~i~g~~l~~~sl~Gli-~l~GivV~n 939 (1037)
T PRK10555 894 SVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLL-TVIGLSAKN 939 (1037)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHH-HHHHHHHcC
Confidence 3344456689999988875 58899988777754 455555433
No 58
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=31.94 E-value=83 Score=28.81 Aligned_cols=37 Identities=24% Similarity=0.387 Sum_probs=28.5
Q ss_pred HHHhhhhhhhhhHHHHHHHH----hCCCCcHHHHHHHHHHH
Q 045535 21 TVATAGLTIQVPLAAVVDSL----TGNAPKLLDYLGAVAVI 57 (100)
Q Consensus 21 LvaTlGLSLTIPLAml~D~l----~~~~~s~~y~lGa~lV~ 57 (100)
+...+=..++||+|+++=++ .|++++...++|.+..+
T Consensus 886 ~~~PliIm~~IPla~~G~~~~l~i~g~~l~~~s~iG~i~L~ 926 (1021)
T PF00873_consen 886 FRQPLIIMLTIPLALIGVLLGLFITGQPLSFMSLIGIIALI 926 (1021)
T ss_dssp SSTHHHHHTTHHHHHHHHHHHHHHTTBEBSHHHHHHHHHHH
T ss_pred eeeeEEEEeccchhhHHHHHHHhhccccccccceehHHHHH
Confidence 33344467899999999986 58899999999976544
No 59
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=31.90 E-value=2.3e+02 Score=21.69 Aligned_cols=55 Identities=16% Similarity=0.081 Sum_probs=37.6
Q ss_pred HHHHHHhhhh-HHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeec
Q 045535 11 WAKAVLLTTA-TVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINI 65 (100)
Q Consensus 11 W~~A~lLTSP-LvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~ 65 (100)
...+.-++.| -.+++=..+..++.++.-.+ .+++++...++|.++.++|-+++..
T Consensus 76 ~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~ 132 (299)
T PRK11453 76 LFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE 132 (299)
T ss_pred HHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence 3445555433 34444455555577777776 6888899999999999999877764
No 60
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=31.49 E-value=1.4e+02 Score=27.95 Aligned_cols=40 Identities=20% Similarity=0.353 Sum_probs=26.9
Q ss_pred HHHhhhhhhhhhHHHHHHHH----hCCCCcHHHHHHHHHHHHHhh
Q 045535 21 TVATAGLTIQVPLAAVVDSL----TGNAPKLLDYLGAVAVIIGFG 61 (100)
Q Consensus 21 LvaTlGLSLTIPLAml~D~l----~~~~~s~~y~lGa~lV~~sF~ 61 (100)
+...+-..++||+|+++=++ .|.+++.+.++|-+. ++|.+
T Consensus 888 ~~~pliI~~tIPls~~G~~~~l~l~g~~l~~~sliGli~-l~Giv 931 (1040)
T PRK10503 888 FIHPITILSTLPTAGVGALLALMIAGSELDVIAIIGIIL-LIGIV 931 (1040)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHH-HHHHH
Confidence 33333355789999888765 589999988877654 44443
No 61
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=31.29 E-value=1.3e+02 Score=27.29 Aligned_cols=58 Identities=14% Similarity=0.100 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-h--CCCCcHHHHHHHHHHHHHhhee
Q 045535 6 LSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-T--GNAPKLLDYLGAVAVIIGFGGI 63 (100)
Q Consensus 6 lSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~--~~~~s~~y~lGa~lV~~sF~~i 63 (100)
.+=+-+..+-++...-..+.+..+|||+|++.-.. + +.......++|-+++++++..=
T Consensus 144 ~Avfa~vv~~~l~~~p~~~f~v~~tipiA~~~G~~~~~~rg~~~~~siig~~ll~~ai~~g 204 (575)
T COG1966 144 GAVFAAVIAKLLANSPWGVFTVFLTIPLAVLMGIYLYRLRGNMGISSVIGLALLILAIYLG 204 (575)
T ss_pred HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhc
Confidence 34455666777888888899999999999999886 2 3355566678888877776543
No 62
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=30.33 E-value=41 Score=30.53 Aligned_cols=34 Identities=9% Similarity=-0.051 Sum_probs=26.9
Q ss_pred CCcHHHHHHHHHHHHHhheeeccCCccccccchh
Q 045535 44 APKLLDYLGAVAVIIGFGGINIPDGALSRSKDAS 77 (100)
Q Consensus 44 ~~s~~y~lGa~lV~~sF~~in~~~~~~~~~~~~~ 77 (100)
.+-+.|.++++.+++.|+.||+-..++++.++..
T Consensus 527 ttf~~~giAcl~~l~~~~~iq~~l~~~~~i~~~~ 560 (618)
T KOG3762|consen 527 TTFRIFGIACLVTLALFISIQLLLKRRGFIKEQG 560 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccccCccC
Confidence 3456789999999999999998777777665543
No 63
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=28.58 E-value=3.1e+02 Score=21.95 Aligned_cols=52 Identities=15% Similarity=0.219 Sum_probs=41.4
Q ss_pred HHHHhhhhHHHhhhhhhhhhH-HHHHHHH-hCCCCcHHHHHHHHHHHHHhheeec
Q 045535 13 KAVLLTTATVATAGLTIQVPL-AAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINI 65 (100)
Q Consensus 13 ~A~lLTSPLvaTlGLSLTIPL-Aml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~ 65 (100)
+|+-++++-.+++--+ +.|+ .++.-.+ .++.+++.-++|.+++++|..++..
T Consensus 133 ~sl~~~svs~~~iika-~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~ 186 (350)
T PTZ00343 133 ISMGLGAVSFTHVVKA-AEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV 186 (350)
T ss_pred HHHhhccHHHHHHHHH-hhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence 5666777777777777 5555 6776766 7889999999999999999998865
No 64
>PRK09577 multidrug efflux protein; Reviewed
Probab=28.50 E-value=1.7e+02 Score=27.22 Aligned_cols=41 Identities=22% Similarity=0.354 Sum_probs=30.0
Q ss_pred HhhhhhhhhhHHHHHHHH----hCCCCcHHHHHHHHHHHHHhheee
Q 045535 23 ATAGLTIQVPLAAVVDSL----TGNAPKLLDYLGAVAVIIGFGGIN 64 (100)
Q Consensus 23 aTlGLSLTIPLAml~D~l----~~~~~s~~y~lGa~lV~~sF~~in 64 (100)
..+-..++||+|+++=++ .|.+++.+.++|-+ .++|.++=|
T Consensus 891 ~plii~~~iPl~l~G~~~~l~l~g~~l~~~s~~G~i-~L~GivVnn 935 (1032)
T PRK09577 891 IPFAVMLVVPLGVIGAVLGVTLRGMPNDIYFKVGLI-ATIGLSAKN 935 (1032)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHH-HHHHHHHcC
Confidence 334445699999998875 48999999898887 566665433
No 65
>PRK09579 multidrug efflux protein; Reviewed
Probab=28.14 E-value=1.8e+02 Score=27.08 Aligned_cols=42 Identities=14% Similarity=0.223 Sum_probs=29.1
Q ss_pred hHHHhhhhhhhhhHHHHHHHH----hCCCCcHHHHHHHHHHHHHhhe
Q 045535 20 ATVATAGLTIQVPLAAVVDSL----TGNAPKLLDYLGAVAVIIGFGG 62 (100)
Q Consensus 20 PLvaTlGLSLTIPLAml~D~l----~~~~~s~~y~lGa~lV~~sF~~ 62 (100)
.+...+=..++||+|+++=++ .|.+++.+.++| ++.++|.++
T Consensus 867 S~~~pliI~~~iPla~~G~~~~L~i~~~~l~~~s~~G-~i~L~GivV 912 (1017)
T PRK09579 867 SFRDPLVILVTVPLSICGALIPLFLGVSSMNIYTQVG-LVTLIGLIS 912 (1017)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHH-HHHHHHHHH
Confidence 444455567789999888864 588999988888 444555443
No 66
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=27.50 E-value=27 Score=29.51 Aligned_cols=37 Identities=24% Similarity=0.330 Sum_probs=32.3
Q ss_pred hhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeec
Q 045535 29 IQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINI 65 (100)
Q Consensus 29 LTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~ 65 (100)
..+=.|++-|++ .|+.++++.|.|++.|+.|-+.+.+
T Consensus 288 ~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~ 325 (346)
T KOG4510|consen 288 TDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVAL 325 (346)
T ss_pred HHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHH
Confidence 456789999998 7999999999999999999887764
No 67
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=26.77 E-value=1e+02 Score=21.79 Aligned_cols=28 Identities=25% Similarity=0.513 Sum_probs=24.0
Q ss_pred HhCCCCcHHHHHHHHHHHHHhheeeccC
Q 045535 40 LTGNAPKLLDYLGAVAVIIGFGGINIPD 67 (100)
Q Consensus 40 l~~~~~s~~y~lGa~lV~~sF~~in~~~ 67 (100)
+.|++.++.-++|-.+++.|.+.+|+.+
T Consensus 78 ~f~E~l~~~~~~gl~LiiaGvi~Lk~~s 105 (106)
T COG2076 78 LFGESLSLIKLLGLALILAGVIGLKLGS 105 (106)
T ss_pred hcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence 3788889999999999999999998754
No 68
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=26.32 E-value=1.1e+02 Score=25.00 Aligned_cols=61 Identities=20% Similarity=0.192 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeecc
Q 045535 6 LSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIP 66 (100)
Q Consensus 6 lSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~ 66 (100)
...|++.+|..+-||..+|-=..-.--+-.+--++ .|..+.-.-++.+++-..|.+++.+.
T Consensus 65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~ 126 (290)
T KOG4314|consen 65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYA 126 (290)
T ss_pred cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEec
Confidence 46899999999999999874332222222333333 46666666688888889999998863
No 69
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=25.35 E-value=29 Score=27.96 Aligned_cols=15 Identities=13% Similarity=-0.006 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHhh
Q 045535 47 LLDYLGAVAVIIGFG 61 (100)
Q Consensus 47 ~~y~lGa~lV~~sF~ 61 (100)
..|++++++.+++.+
T Consensus 401 ~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 401 YIFYASGSIVVSAGL 415 (455)
T ss_pred hHHHHhhHHHHHHHH
Confidence 445555554454443
No 70
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=24.32 E-value=82 Score=24.39 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=26.7
Q ss_pred hhhhhhHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 045535 27 LTIQVPLAAVVDSLTGNAPKLLDYLGAVAVIIG 59 (100)
Q Consensus 27 LSLTIPLAml~D~l~~~~~s~~y~lGa~lV~~s 59 (100)
+.++=|++.+--++-++.+.+.+++|++.|++-
T Consensus 40 ~~l~dP~~~lq~~~a~~~~~~~~~~~~~iv~~~ 72 (255)
T TIGR02163 40 IPLSDPLITLQILLAGHSPPTNALIGALIIVAF 72 (255)
T ss_pred ccCcCHHHHHHHHHhcChhhHHHHHHHHHHHHH
Confidence 677778888887778888888999999876553
No 71
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=23.48 E-value=2.6e+02 Score=24.00 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=35.0
Q ss_pred HHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCC--CCcHHHHHHHHHHHHHhhe
Q 045535 9 YLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGN--APKLLDYLGAVAVIIGFGG 62 (100)
Q Consensus 9 ylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~--~~s~~y~lGa~lV~~sF~~ 62 (100)
+.+.-|-.+.+--.++....++||+|++.=++ +.+ +.....++|-+++++++..
T Consensus 147 F~~v~a~~~~~~p~~~~~~~~~I~~Ai~~G~~~y~~~~~~~~~t~i~vvll~~~v~~ 203 (376)
T PF02554_consen 147 FADVVANTFVNSPWAATSSLLFIPIAILFGLLVYKRGGNLGPATIIGVVLLLLAVWL 203 (376)
T ss_pred HHHHHHHHhccChhHHHHHHHHHHHHHHHhHhheecCCchHhhHHHHHHHHHHHHHh
Confidence 33333434444444566678999999999987 333 4556678888877776654
No 72
>PF02392 Ycf4: Ycf4; InterPro: IPR003359 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA (IPR005137 from INTERPRO) [], Ycf3 [, ], and Ycf4 []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. ; GO: 0015979 photosynthesis, 0009522 photosystem I, 0009579 thylakoid, 0016021 integral to membrane
Probab=22.64 E-value=92 Score=24.12 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhhhHHHhhhhhh
Q 045535 5 VLSDYLWAKAVLLTTATVATAGLTI 29 (100)
Q Consensus 5 vlSDylW~~A~lLTSPLvaTlGLSL 29 (100)
-.|+|+||..+++-+.=.-.+|+|.
T Consensus 15 r~SN~~wa~ii~~G~lGFll~G~sS 39 (180)
T PF02392_consen 15 RFSNYFWAFIIFLGGLGFLLVGISS 39 (180)
T ss_pred hHHHHHHHHHHHHhhHHHHHhHHHH
Confidence 3799999999987766555555554
No 73
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=21.90 E-value=1.5e+02 Score=23.18 Aligned_cols=32 Identities=13% Similarity=-0.032 Sum_probs=14.3
Q ss_pred hhhhhhHHHHHHHH--hCCCCcHHHHHHHHHHHH
Q 045535 27 LTIQVPLAAVVDSL--TGNAPKLLDYLGAVAVII 58 (100)
Q Consensus 27 LSLTIPLAml~D~l--~~~~~s~~y~lGa~lV~~ 58 (100)
=+..+|+.++.=+. .+..+-..|.++...++.
T Consensus 105 N~~~lglpi~~~l~g~~~~~~~~~~~~~~~i~~~ 138 (385)
T PF03547_consen 105 NTGFLGLPILQALFGERGVAYAIIFDVVNNIILW 138 (385)
T ss_pred cchhhHHHHHHHHhcchhhhhehHHHHhhHHHHH
Confidence 33445665443333 233444555444444333
No 74
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=21.88 E-value=3.5e+02 Score=22.12 Aligned_cols=56 Identities=14% Similarity=0.120 Sum_probs=41.1
Q ss_pred HHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHHh-------CCCCcHHHHHHHHHHHHHhheee
Q 045535 9 YLWAKAVLLTTATVATAGLTIQVPLAAVVDSLT-------GNAPKLLDYLGAVAVIIGFGGIN 64 (100)
Q Consensus 9 ylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l~-------~~~~s~~y~lGa~lV~~sF~~in 64 (100)
.++.+++-.||+..+++=.+++=-+.++.-.+. +...+...++|.++-++|..++-
T Consensus 93 ~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~ 155 (358)
T PLN00411 93 ITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVI 155 (358)
T ss_pred HHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHH
Confidence 367778889999999886555544555555543 67889999999988888876643
No 75
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=21.28 E-value=2.5e+02 Score=18.35 Aligned_cols=14 Identities=29% Similarity=0.411 Sum_probs=2.5
Q ss_pred hCCCCcHHHHHHHH
Q 045535 41 TGNAPKLLDYLGAV 54 (100)
Q Consensus 41 ~~~~~s~~y~lGa~ 54 (100)
.|.+.++.-++|..
T Consensus 78 f~E~~s~~~~~gi~ 91 (93)
T PF00893_consen 78 FGESLSLSKWLGIG 91 (93)
T ss_dssp H--------HHHHH
T ss_pred hCCCCCHHHHhhee
Confidence 34444444444433
No 76
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=20.51 E-value=2.9e+02 Score=19.58 Aligned_cols=37 Identities=19% Similarity=0.148 Sum_probs=26.4
Q ss_pred hhhhhhhhHHHHHHHH-----hCCCCcHHHHHHHHHHHHHhh
Q 045535 25 AGLTIQVPLAAVVDSL-----TGNAPKLLDYLGAVAVIIGFG 61 (100)
Q Consensus 25 lGLSLTIPLAml~D~l-----~~~~~s~~y~lGa~lV~~sF~ 61 (100)
+.+.-++=.+++.|.+ ..++.++.-++|.+++++|.+
T Consensus 96 l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~ 137 (138)
T PF04657_consen 96 LIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI 137 (138)
T ss_pred HHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence 3344455567777774 245778999999999999865
No 77
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=20.04 E-value=2.4e+02 Score=21.84 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=24.3
Q ss_pred hhHHHHHHHH-hCCCCcHHHH----HHHHHHHHHhheeec
Q 045535 31 VPLAAVVDSL-TGNAPKLLDY----LGAVAVIIGFGGINI 65 (100)
Q Consensus 31 IPLAml~D~l-~~~~~s~~y~----lGa~lV~~sF~~in~ 65 (100)
.-.|.+.+++ .+...+...+ +|.++++.|-+++..
T Consensus 249 pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 249 VIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 3356667776 4665555555 999999998877654
Done!