Query 045535
Match_columns 100
No_of_seqs 104 out of 180
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 04:46:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045535.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045535hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 97.0 0.00045 1.5E-08 48.7 3.5 67 2-68 38-106 (137)
2 3b5d_A Multidrug transporter E 93.9 0.22 7.6E-06 33.0 6.6 64 3-67 39-105 (110)
3 1r7c_A Genome polyprotein; mem 56.7 7.9 0.00027 21.5 2.2 16 2-17 12-28 (31)
4 1rty_A YVQK protein; all alpha 26.9 29 0.00098 25.5 1.8 15 3-17 153-167 (193)
5 2g2d_A ATP:cobalamin adenosylt 26.8 29 0.00099 25.4 1.8 15 3-17 162-176 (193)
6 1nog_A Conserved hypothetical 26.4 30 0.001 25.1 1.8 15 3-17 146-160 (177)
7 3ci3_A Cobalamin adenosyltrans 26.3 30 0.001 25.4 1.8 15 3-17 161-175 (194)
8 2zhy_A ATP:COB(I)alamin adenos 26.1 31 0.001 25.1 1.8 15 3-17 152-166 (183)
9 2idx_A COB(I)yrinic acid A,C-d 26.0 31 0.001 25.4 1.8 15 3-17 159-173 (196)
10 2ah6_A BH1595, unknown conserv 25.8 31 0.0011 25.8 1.8 15 3-17 166-180 (208)
11 1woz_A 177AA long conserved hy 25.7 32 0.0011 24.9 1.8 15 3-17 146-160 (177)
12 2nt8_A Cobalamin adenosyltrans 24.1 34 0.0012 25.8 1.8 15 3-17 190-204 (223)
13 3ke4_A Hypothetical cytosolic 21.9 40 0.0014 25.3 1.8 15 3-17 172-186 (213)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.03 E-value=0.00045 Score=48.75 Aligned_cols=67 Identities=18% Similarity=0.141 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHhhh-hhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeeccCC
Q 045535 2 LDNVLSDYLWAKAVLLTTATVATAG-LTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIPDG 68 (100)
Q Consensus 2 l~tvlSDylW~~A~lLTSPLvaTlG-LSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~~~ 68 (100)
+++.+|=|+|.+|+=...+-++..= ..+..-++.+.-++ .|.+.++.-++|.++|++|.+++|..++
T Consensus 38 ~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~~ 106 (137)
T 2i68_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR 106 (137)
T ss_dssp HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 4577888899988654333323222 24555556666766 7999999999999999999999998553
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=93.89 E-value=0.22 Score=32.98 Aligned_cols=64 Identities=17% Similarity=0.135 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHhhhhHHHhhhh--hhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeeccC
Q 045535 3 DNVLSDYLWAKAVLLTTATVATAGL--TIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIPD 67 (100)
Q Consensus 3 ~tvlSDylW~~A~lLTSPLvaTlGL--SLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~~ 67 (100)
+..+|=++|.+|+ ..-|+-..-.+ ++..-++.+.-++ .|.+.++.-++|.++++.|.+++|..+
T Consensus 39 ~~~~~~~~~~~al-~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 39 CYCASFWLLAQTL-AYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHH-HhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4567778888854 45555544444 3344445556665 799999999999999999999999853
No 3
>1r7c_A Genome polyprotein; membrane anchor domain, HCV NS5A protein, structure, peptide, membrane protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 1r7d_A 1r7e_A 1r7f_A 1r7g_A
Probab=56.73 E-value=7.9 Score=21.53 Aligned_cols=16 Identities=50% Similarity=0.864 Sum_probs=13.0
Q ss_pred hhHHHHHHH-HHHHHHh
Q 045535 2 LDNVLSDYL-WAKAVLL 17 (100)
Q Consensus 2 l~tvlSDyl-W~~A~lL 17 (100)
+.+|+||+- |+.|-++
T Consensus 12 vctvLsDfktWlkakil 28 (31)
T 1r7c_A 12 ICEVLSDFKTWLKAKLM 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 468999987 9888765
No 4
>1rty_A YVQK protein; all alpha-helical trimeric protein, structural genomics, PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: a.25.2.2
Probab=26.92 E-value=29 Score=25.50 Aligned_cols=15 Identities=47% Similarity=0.609 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHh
Q 045535 3 DNVLSDYLWAKAVLL 17 (100)
Q Consensus 3 ~tvlSDylW~~A~lL 17 (100)
-|-+|||||++|-..
T Consensus 153 LNRLSD~LFvlaR~~ 167 (193)
T 1rty_A 153 LNRLSDYFFAGARVV 167 (193)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 477999999988754
No 5
>2g2d_A ATP:cobalamin adenosyltransferase; helix bundle, trimer, structural genomics, PSI, protein STRU initiative; 2.00A {Mycobacterium tuberculosis}
Probab=26.82 E-value=29 Score=25.44 Aligned_cols=15 Identities=33% Similarity=0.293 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHh
Q 045535 3 DNVLSDYLWAKAVLL 17 (100)
Q Consensus 3 ~tvlSDylW~~A~lL 17 (100)
-|-+|||||++|-..
T Consensus 162 LNRLSD~lFvlaR~~ 176 (193)
T 2g2d_A 162 LNRLSDLLFILSRVA 176 (193)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 477999999998653
No 6
>1nog_A Conserved hypothetical protein TA0546; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics; 1.55A {Thermoplasma acidophilum} SCOP: a.25.2.2
Probab=26.45 E-value=30 Score=25.08 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHh
Q 045535 3 DNVLSDYLWAKAVLL 17 (100)
Q Consensus 3 ~tvlSDylW~~A~lL 17 (100)
-|-+|||||++|-..
T Consensus 146 LNRLSD~lFvlaR~~ 160 (177)
T 1nog_A 146 ANRLSSILFMHALIS 160 (177)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 477999999998653
No 7
>3ci3_A Cobalamin adenosyltransferase PDUO-like protein; adenosyltransferase variant, adenosylcobalamin binding, ATP binding; HET: 3PO 5AD B12; 1.11A {Lactobacillus reuteri} PDB: 3ci1_A* 3ci4_A* 2r6t_A* 2r6x_A* 3gah_A* 3gai_A* 3gaj_A*
Probab=26.33 E-value=30 Score=25.43 Aligned_cols=15 Identities=47% Similarity=0.523 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHh
Q 045535 3 DNVLSDYLWAKAVLL 17 (100)
Q Consensus 3 ~tvlSDylW~~A~lL 17 (100)
-|-+|||||++|-..
T Consensus 161 LNRLSD~LFvlaR~~ 175 (194)
T 3ci3_A 161 INRLSDYFFAAARYA 175 (194)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 477999999998653
No 8
>2zhy_A ATP:COB(I)alamin adenosyltransferase, putative; helix bundle; 1.80A {Burkholderia thailandensis} PDB: 2zhz_A*
Probab=26.06 E-value=31 Score=25.10 Aligned_cols=15 Identities=47% Similarity=0.481 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHh
Q 045535 3 DNVLSDYLWAKAVLL 17 (100)
Q Consensus 3 ~tvlSDylW~~A~lL 17 (100)
-|-+|||||++|-..
T Consensus 152 LNRLSD~lFvlaR~~ 166 (183)
T 2zhy_A 152 VNRLSDLLFVLARVL 166 (183)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 477999999998654
No 9
>2idx_A COB(I)yrinic acid A,C-diamide adenosyltransferase; ATP, cobalamin; HET: ATP; 2.50A {Homo sapiens}
Probab=25.97 E-value=31 Score=25.37 Aligned_cols=15 Identities=47% Similarity=0.485 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHh
Q 045535 3 DNVLSDYLWAKAVLL 17 (100)
Q Consensus 3 ~tvlSDylW~~A~lL 17 (100)
-|-+|||||++|-..
T Consensus 159 LNRLSD~LFvlaR~~ 173 (196)
T 2idx_A 159 LNRLSDYLFTLARYA 173 (196)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 477999999998754
No 10
>2ah6_A BH1595, unknown conserved protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bacillus halodurans}
Probab=25.82 E-value=31 Score=25.76 Aligned_cols=15 Identities=47% Similarity=0.596 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHh
Q 045535 3 DNVLSDYLWAKAVLL 17 (100)
Q Consensus 3 ~tvlSDylW~~A~lL 17 (100)
-|-+|||||++|-..
T Consensus 166 LNRLSD~LFvlaR~~ 180 (208)
T 2ah6_A 166 LNRLSDYFFAVARVV 180 (208)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 477999999988754
No 11
>1woz_A 177AA long conserved hypothetical protein (ST1454; structural genomics, unknown function; 1.94A {Sulfolobus tokodaii}
Probab=25.68 E-value=32 Score=24.91 Aligned_cols=15 Identities=40% Similarity=0.399 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHh
Q 045535 3 DNVLSDYLWAKAVLL 17 (100)
Q Consensus 3 ~tvlSDylW~~A~lL 17 (100)
-|-+|||||++|-..
T Consensus 146 LNRLSD~lFvlaR~~ 160 (177)
T 1woz_A 146 LNRLSSLLFAMALVA 160 (177)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 478999999998653
No 12
>2nt8_A Cobalamin adenosyltransferase; ATP binding; HET: ATP; 1.68A {Lactobacillus reuteri}
Probab=24.08 E-value=34 Score=25.78 Aligned_cols=15 Identities=47% Similarity=0.523 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHh
Q 045535 3 DNVLSDYLWAKAVLL 17 (100)
Q Consensus 3 ~tvlSDylW~~A~lL 17 (100)
-|-+|||||++|-..
T Consensus 190 LNRLSD~LFvlAR~~ 204 (223)
T 2nt8_A 190 INRLSDYFFAAARYA 204 (223)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 478999999998654
No 13
>3ke4_A Hypothetical cytosolic protein; helix bundle, transferase; 1.90A {Bacillus cereus} PDB: 3ke5_A*
Probab=21.94 E-value=40 Score=25.30 Aligned_cols=15 Identities=53% Similarity=0.678 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHh
Q 045535 3 DNVLSDYLWAKAVLL 17 (100)
Q Consensus 3 ~tvlSDylW~~A~lL 17 (100)
-|-+|||||++|-..
T Consensus 172 LNRLSD~LFvlAR~~ 186 (213)
T 3ke4_A 172 VNRLSDYLFAIARVI 186 (213)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHH
Confidence 477999999987654
Done!