Query 045535
Match_columns 100
No_of_seqs 104 out of 180
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 04:46:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045535.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045535hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iwga8 f.35.1.1 (A:513-566,A: 14.4 1.6E+02 0.012 19.2 5.7 38 20-57 80-121 (222)
2 d1ks9a1 a.100.1.7 (A:168-291) 10.8 70 0.0051 18.9 2.2 32 33-64 76-107 (124)
3 d2r6gf1 e.70.1.1 (F:13-260) Ma 8.7 2.1E+02 0.015 19.6 4.4 56 29-85 33-102 (248)
4 d1oedc_ f.36.1.1 (C:) Acetylch 7.8 1.2E+02 0.0089 19.4 2.6 20 21-40 35-54 (260)
5 d1xmec1 f.23.9.1 (C:2-34) Bact 6.5 1.5E+02 0.011 14.9 2.0 13 47-59 19-31 (33)
6 d1vl6a2 c.58.1.3 (A:1-154) Mal 5.1 1.1E+02 0.008 20.4 1.1 21 59-81 122-142 (154)
7 d1l8ya_ a.21.1.1 (A:) Nucleola 4.5 1.4E+02 0.0099 18.1 1.1 6 35-40 18-23 (84)
8 d2pf1a2 g.32.1.1 (A:36-65) Pro 3.4 2E+02 0.015 14.2 1.0 6 8-13 4-9 (30)
9 d1oeda_ f.36.1.1 (A:) Acetylch 3.2 4E+02 0.029 16.6 2.7 20 21-40 35-54 (227)
10 d1v54d_ f.23.1.1 (D:) Mitochon 3.1 3.2E+02 0.023 17.6 2.1 14 47-60 75-88 (144)
No 1
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=14.41 E-value=1.6e+02 Score=19.19 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=24.9
Q ss_pred hHHHhhhhhhhhhHHHHHHHH----hCCCCcHHHHHHHHHHH
Q 045535 20 ATVATAGLTIQVPLAAVVDSL----TGNAPKLLDYLGAVAVI 57 (100)
Q Consensus 20 PLvaTlGLSLTIPLAml~D~l----~~~~~s~~y~lGa~lV~ 57 (100)
.+..++-..++||+++++=+. .|.+.+....+|.+..+
T Consensus 80 S~~~~liv~~~ipl~~~~~~~~l~~~g~~~~~~~~~g~i~l~ 121 (222)
T d1iwga8 80 SWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTI 121 (222)
T ss_dssp SSSHHHHGGGHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccccchh
Confidence 344444455788998887654 57888877766665533
No 2
>d1ks9a1 a.100.1.7 (A:168-291) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}
Probab=10.81 E-value=70 Score=18.91 Aligned_cols=32 Identities=13% Similarity=-0.061 Sum_probs=24.7
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHHhheee
Q 045535 33 LAAVVDSLTGNAPKLLDYLGAVAVIIGFGGIN 64 (100)
Q Consensus 33 LAml~D~l~~~~~s~~y~lGa~lV~~sF~~in 64 (100)
=+|.-|+.+|++.-.-++.|.+.=++-=..+.
T Consensus 76 sSM~qD~~~gr~tEid~i~G~vv~~a~~~gi~ 107 (124)
T d1ks9a1 76 SSMLQDIRALRHTEIDYINGFLLRRARAHGIA 107 (124)
T ss_dssp CHHHHHHHTTCCCSGGGTHHHHHHHHHHHTCC
T ss_pred ChHHHHHHcCCcchHHHHHHHHHHHHHHhCCC
Confidence 38999988999888889999887666554444
No 3
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=8.71 E-value=2.1e+02 Score=19.65 Aligned_cols=56 Identities=11% Similarity=-0.106 Sum_probs=35.7
Q ss_pred hhhhHHHHHHHH--hCCCCcHHHHHHHHHHHHHhhe-----------eeccCCccccccchhhhh-hhccC
Q 045535 29 IQVPLAAVVDSL--TGNAPKLLDYLGAVAVIIGFGG-----------INIPDGALSRSKDASLEL-ETENA 85 (100)
Q Consensus 29 LTIPLAml~D~l--~~~~~s~~y~lGa~lV~~sF~~-----------in~~~~~~~~~~~~~~e~-e~~~~ 85 (100)
+++=+.++++++ ..+.+.+.|++=+++.++.|++ -|+.+... -+|+.++|. ++++.
T Consensus 33 ~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~Fvi~Pi~yT~~iaFTNy~tgh~-ltk~~Ai~~l~~~~~ 102 (248)
T d2r6gf1 33 TTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFVLFPLVCTIAIAFTNYSSTNQ-LTFERAQEVLLDRSW 102 (248)
T ss_dssp HHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHTHHHHHHHHHGGGBCCSSTTC-BCHHHHHHHHTTCEE
T ss_pred HHHHHHHheEEEEEccCccceehhhhHHHHHHHHHHHhheeEEEEEEEEcCCCcc-ccHHHHHHHHHhccc
Confidence 444566788887 4667899998888888888765 46644443 344545554 44443
No 4
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=7.83 E-value=1.2e+02 Score=19.39 Aligned_cols=20 Identities=25% Similarity=0.109 Sum_probs=14.3
Q ss_pred HHHhhhhhhhhhHHHHHHHH
Q 045535 21 TVATAGLTIQVPLAAVVDSL 40 (100)
Q Consensus 21 LvaTlGLSLTIPLAml~D~l 40 (100)
|..|+=|++++-+-+++|.+
T Consensus 35 l~it~lLs~~vf~~~v~~~l 54 (260)
T d1oedc_ 35 TAISVLLAQAVFLLLTSQRL 54 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHHHhC
Confidence 45555577777777788888
No 5
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=6.47 E-value=1.5e+02 Score=14.91 Aligned_cols=13 Identities=38% Similarity=0.598 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHH
Q 045535 47 LLDYLGAVAVIIG 59 (100)
Q Consensus 47 ~~y~lGa~lV~~s 59 (100)
..+|+|...|+.+
T Consensus 19 lvfw~gv~avf~a 31 (33)
T d1xmec1 19 LVFWLGVYAVFFA 31 (33)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 4578888777653
No 6
>d1vl6a2 c.58.1.3 (A:1-154) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}
Probab=5.11 E-value=1.1e+02 Score=20.43 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=17.0
Q ss_pred HhheeeccCCccccccchhhhhh
Q 045535 59 GFGGINIPDGALSRSKDASLELE 81 (100)
Q Consensus 59 sF~~in~~~~~~~~~~~~~~e~e 81 (100)
+|-.||+ ++.+..++..+|++
T Consensus 122 tFggInL--EDI~aP~CFeIe~~ 142 (154)
T d1vl6a2 122 SFGGINL--EDIGAPKCFRILQR 142 (154)
T ss_dssp GCSEEEE--CSCCTTHHHHHHHH
T ss_pred cccceeh--hhhcCchhhHHHHH
Confidence 7899999 66878888877765
No 7
>d1l8ya_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.51 E-value=1.4e+02 Score=18.07 Aligned_cols=6 Identities=33% Similarity=0.373 Sum_probs=3.4
Q ss_pred HHHHHH
Q 045535 35 AVVDSL 40 (100)
Q Consensus 35 ml~D~l 40 (100)
+++|++
T Consensus 18 vIgdYl 23 (84)
T d1l8ya_ 18 VIGDYL 23 (84)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 456665
No 8
>d2pf1a2 g.32.1.1 (A:36-65) Prothrombin {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.41 E-value=2e+02 Score=14.20 Aligned_cols=6 Identities=67% Similarity=1.348 Sum_probs=3.7
Q ss_pred HHHHHH
Q 045535 8 DYLWAK 13 (100)
Q Consensus 8 DylW~~ 13 (100)
|.+|++
T Consensus 4 d~fwak 9 (30)
T d2pf1a2 4 DAFWAK 9 (30)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 566665
No 9
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=3.15 E-value=4e+02 Score=16.62 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=11.9
Q ss_pred HHHhhhhhhhhhHHHHHHHH
Q 045535 21 TVATAGLTIQVPLAAVVDSL 40 (100)
Q Consensus 21 LvaTlGLSLTIPLAml~D~l 40 (100)
|..|.=|++++=+-++.|.+
T Consensus 35 l~it~lL~~~v~~~~v~~~l 54 (227)
T d1oeda_ 35 LSISVLLSLTVFLLVIVELI 54 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHHHhC
Confidence 34444455666666677777
No 10
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.09 E-value=3.2e+02 Score=17.56 Aligned_cols=14 Identities=36% Similarity=0.596 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHh
Q 045535 47 LLDYLGAVAVIIGF 60 (100)
Q Consensus 47 ~~y~lGa~lV~~sF 60 (100)
|..++|.+++++||
T Consensus 75 wK~v~g~~~~~i~~ 88 (144)
T d1v54d_ 75 WKTVVGAAMFFIGF 88 (144)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Done!