RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 045536
(438 letters)
>gnl|CDD|178129 PLN02513, PLN02513, adenylosuccinate synthase.
Length = 427
Score = 864 bits (2235), Expect = 0.0
Identities = 345/426 (80%), Positives = 379/426 (88%)
Query: 13 LSQVSGVLGCQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSG 72
LSQVS VLG QWGDEGKGKLVDILA+HFDIVARCQGGANAGHTIYN EGKKFALHLVPSG
Sbjct: 1 LSQVSAVLGTQWGDEGKGKLVDILAQHFDIVARCQGGANAGHTIYNDEGKKFALHLVPSG 60
Query: 73 ILNEDTVCVIGNGVVVHLPGLFNEIDDLEANGVSCKGRILVSDRAHLLFDFHQEVDGLRE 132
ILNE T CVIGNGVVVHLPGLF EID LE+NGVSC+GR+LVSDRAHLLFDFHQEVDGLRE
Sbjct: 61 ILNEKTTCVIGNGVVVHLPGLFEEIDGLESNGVSCEGRLLVSDRAHLLFDFHQEVDGLRE 120
Query: 133 AELVKSFIGTTRRGIGPAYSSKVIRSGIRVSDLRHMDTFPQKLDFLLSNAAARFPGFKYT 192
AEL S IGTT+RGIGPAYSSK R+G+RV DLRHMDTF +KL LL++AAARF GF+Y
Sbjct: 121 AELAGSKIGTTKRGIGPAYSSKATRNGLRVGDLRHMDTFAEKLRELLADAAARFEGFEYD 180
Query: 193 PHMLREEVEKYKRIAERLEPFVVDTVHFINESIAQKRKILVEGGQATMLDIDFGTYPFVT 252
M+ EEVE YK+ AERLEPF+ DTVH++NE+I +KILVEG QATMLDIDFGTYPFVT
Sbjct: 181 ASMVEEEVEAYKKFAERLEPFITDTVHYLNEAIQAGKKILVEGAQATMLDIDFGTYPFVT 240
Query: 253 SSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEILGQGGDHLRLAGQEFGT 312
SS+PSAGGICTGLGIAPR +GD+IGVVKAYTTRVGSGPFPTE+ G+ GD LR AGQEFGT
Sbjct: 241 SSNPSAGGICTGLGIAPRKLGDIIGVVKAYTTRVGSGPFPTELFGELGDLLREAGQEFGT 300
Query: 313 TTGRPRRCGWLDIVALKYCCQINGFSSLNLTKLDVLSELPEIQLGVAYKRVDGTPIKSFP 372
TTGRPRRCGWLDIVALKY CQINGF+SLNLTKLDVLS LPEI++GVAYK DG +KSFP
Sbjct: 301 TTGRPRRCGWLDIVALKYSCQINGFTSLNLTKLDVLSGLPEIKIGVAYKTPDGKVVKSFP 360
Query: 373 ADLVLLEQLKVEYEVLPGWQSDISSIRNYSDLPKAARQFVERIEELVGVPINYIGVGPGR 432
ADL LEQ++V YEVLPGWQ DISS+RNY DLP AA+ +VERIEELVGVP++YIGVGPGR
Sbjct: 361 ADLDTLEQVEVVYEVLPGWQEDISSVRNYDDLPAAAQAYVERIEELVGVPVHYIGVGPGR 420
Query: 433 DALIFK 438
DALI K
Sbjct: 421 DALIVK 426
>gnl|CDD|197875 smart00788, Adenylsucc_synt, Adenylosuccinate synthetase.
Adenylosuccinate synthetase plays an important role in
purine biosynthesis, by catalyzing the GTP-dependent
conversion of IMP and aspartic acid to AMP.
Adenylosuccinate synthetase has been characterized from
various sources ranging from Escherichia coli (gene
purA) to vertebrate tissues. In vertebrates, two
isozymes are present - one involved in purine
biosynthesis and the other in the purine nucleotide
cycle. The crystal structure of adenylosuccinate
synthetase from E. coli reveals that the dominant
structural element of each monomer of the homodimer is a
central beta-sheet of 10 strands. The first nine strands
of the sheet are mutually parallel with right-handed
crossover connections between the strands. The 10th
strand is antiparallel with respect to the first nine
strands. In addition, the enzyme has two antiparallel
beta-sheets, comprised of two strands and three strands
each, 11 alpha-helices and two short 3/10-helices.
Further, it has been suggested that the similarities in
the GTP-binding domains of the synthetase and the p21ras
protein are an example of convergent evolution of two
distinct families of GTP-binding proteins. Structures of
adenylosuccinate synthetase from Triticum aestivum and
Arabidopsis thaliana when compared with the known
structures from E. coli reveals that the overall fold is
very similar to that of the E. coli protein.
Length = 417
Score = 649 bits (1677), Expect = 0.0
Identities = 225/420 (53%), Positives = 281/420 (66%), Gaps = 7/420 (1%)
Query: 19 VLGCQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDT 78
V+G QWGDEGKGK+VD LAE D+V R QGG NAGHT+ GKK+ LHL+PSGILN +
Sbjct: 4 VVGAQWGDEGKGKIVDYLAEKADVVVRFQGGNNAGHTVV-VNGKKYKLHLLPSGILNPNK 62
Query: 79 VCVIGNGVVVHLPGLFNEIDDLEANGVSCKGRILVSDRAHLLFDFHQEVDGLREAELVKS 138
VIGNGVV+ LF EI++LEA GV K R+ +SDRAHL+ +H +D RE
Sbjct: 63 KNVIGNGVVIDPEALFKEIEELEAKGVDVKDRLFISDRAHLILPYHIALDKAREKAR--- 119
Query: 139 FIGTTRRGIGPAYSSKVIRSGIRVSDLRHMDTFPQKLDFLLSNAAARFPGFKYTPHMLRE 198
IGTT RGIGPAY KV R GIRV DL + +KL+ LL + E
Sbjct: 120 -IGTTGRGIGPAYEDKVARRGIRVGDLFDEEVLREKLEELLDYKNFLLKKLYGAEPVDVE 178
Query: 199 EV-EKYKRIAERLEPFVVDTVHFINESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSPS 257
E+ E+ AERL P+V D +NE++ +K+L EG Q T+LDID GTYP+VTSS+ +
Sbjct: 179 EILEELLEYAERLRPYVTDVSELLNEALKAGKKVLFEGAQGTLLDIDHGTYPYVTSSNTT 238
Query: 258 AGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEILGQGGDHLRLAGQEFGTTTGRP 317
AGG TG GI P + +IGVVKAYTTRVG GPFPTE+ + G+ LR G EFGTTTGRP
Sbjct: 239 AGGAATGAGIGPTRIDRVIGVVKAYTTRVGEGPFPTELFDETGEKLRERGHEFGTTTGRP 298
Query: 318 RRCGWLDIVALKYCCQINGFSSLNLTKLDVLSELPEIQLGVAYKRVDGTPIKSFPADLVL 377
RRCGW D V L+Y +ING + L LTKLDVL L EI++ VAYK +DG I FPADL
Sbjct: 299 RRCGWFDAVLLRYAVRINGITGLALTKLDVLDGLDEIKVCVAYK-LDGKIIDYFPADLED 357
Query: 378 LEQLKVEYEVLPGWQSDISSIRNYSDLPKAARQFVERIEELVGVPINYIGVGPGRDALIF 437
LE+ + YE LPGW+ D + +R+Y DLP+ A++++ERIEELVGVP++ I GP R+ I
Sbjct: 358 LERCEPIYEELPGWKEDTTGVRSYEDLPENAKKYIERIEELVGVPVSIISTGPDREQTIV 417
>gnl|CDD|216073 pfam00709, Adenylsucc_synt, Adenylosuccinate synthetase.
Length = 420
Score = 639 bits (1651), Expect = 0.0
Identities = 229/419 (54%), Positives = 295/419 (70%), Gaps = 3/419 (0%)
Query: 19 VLGCQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDT 78
V+G QWGDEGKGK+VD+LAE D+V R QGG NAGHT+ +GKK+ LHL+PSGILN
Sbjct: 4 VVGAQWGDEGKGKIVDLLAEDADVVVRFQGGNNAGHTVV-VDGKKYKLHLLPSGILNPGV 62
Query: 79 VCVIGNGVVVHLPGLFNEIDDLEANGVSCKGRILVSDRAHLLFDFHQEVDGLREAELVKS 138
+ VIGNGVVV L EI++LE GV R+ +SDRAHL+ +H+ +D LRE K
Sbjct: 63 INVIGNGVVVDPEALLEEIEELEKKGVDVLDRLFISDRAHLILPYHRALDRLREEARGKG 122
Query: 139 FIGTTRRGIGPAYSSKVIRSGIRVSDLRHMDTFPQKLDFLLSNAAARFP-GFKYTPHMLR 197
IGTT RGIGPAY+ KV R GIRV DL + +KL+ LL A + P +
Sbjct: 123 KIGTTGRGIGPAYADKVARRGIRVGDLLDEEVLREKLEQLLEEKNAILEKLYGAEPLDVE 182
Query: 198 EEVEKYKRIAERLEPFVVDTVHFINESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSPS 257
E +E+Y AERL P++ DT +N ++ + +K+L EG Q T+LDID GTYP+VTSS+ +
Sbjct: 183 EILEEYLEYAERLRPYITDTSELLNRALKEGKKVLFEGAQGTLLDIDHGTYPYVTSSNTT 242
Query: 258 AGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEILGQGGDHLRLAGQEFGTTTGRP 317
AGG CTG GI PR + ++GVVKAYTTRVG GPFPTE+ + G+ LR G EFGTTTGRP
Sbjct: 243 AGGACTGSGIGPRKIDHVLGVVKAYTTRVGEGPFPTELFDELGEKLREKGHEFGTTTGRP 302
Query: 318 RRCGWLDIVALKYCCQINGFSSLNLTKLDVLSELPEIQLGVAYKRVDGTPIKSFPADLVL 377
RRCGWLD+VAL+Y +ING +SL LTKLDVL L EI++ VAY R DG I FPA L
Sbjct: 303 RRCGWLDLVALRYAARINGVTSLALTKLDVLDGLDEIKVCVAY-RYDGKEIDYFPASLED 361
Query: 378 LEQLKVEYEVLPGWQSDISSIRNYSDLPKAARQFVERIEELVGVPINYIGVGPGRDALI 436
LE+++ YE LPGW+ DI+ +R++ DLP+ A+++++RIEELVGVP++ I VGP R+ I
Sbjct: 362 LEKVEPVYETLPGWKEDITGVRSFEDLPENAKKYIKRIEELVGVPVSLISVGPDREQTI 420
>gnl|CDD|239382 cd03108, AdSS, Adenylosuccinate synthetase (AdSS) catalyzes the
first step in the de novo biosynthesis of AMP. IMP and
L-aspartate are conjugated in a two-step reaction
accompanied by the hydrolysis of GTP to GDP in the
presence of Mg2+. In the first step, the r-phosphate
group of GTP is transferred to the 6-oxygen atom of IMP.
An aspartate then displaces this 6-phosphate group to
form the product adenylosuccinate. Because of its
critical role in purine biosynthesis, AdSS is a target
of antibiotics, herbicides and antitumor drugs.
Length = 363
Score = 629 bits (1625), Expect = 0.0
Identities = 234/415 (56%), Positives = 277/415 (66%), Gaps = 52/415 (12%)
Query: 16 VSGVLGCQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILN 75
V+ V+G QWGDEGKGK+VD+LAE DIV R QGG NAGHT+ GKKF LHL+PSGILN
Sbjct: 1 VTVVVGAQWGDEGKGKIVDLLAERADIVVRFQGGNNAGHTVVV-NGKKFKLHLLPSGILN 59
Query: 76 EDTVCVIGNGVVVHLPGLFNEIDDLEANGVSCKGRILVSDRAHLLFDFHQEVDGLREAEL 135
CVIGNGVV+ P LF EID+LE G GR+ +SDRAHL+F +H +DGLRE
Sbjct: 60 PGVTCVIGNGVVIDPPALFEEIDELEKKGGDVTGRLFISDRAHLVFPYHILLDGLREEAR 119
Query: 136 VKSFIGTTRRGIGPAYSSKVIRSGIRVSDLRHMDTFPQKLDFLLSNAAARFPGFKYTPHM 195
K IGTT+RGIGPAY K R GIRV DL
Sbjct: 120 GKKKIGTTKRGIGPAYEDKAARRGIRVGDL------------------------------ 149
Query: 196 LREEVEKYKRIAERLEPFVVDTVHFINESIAQKRKILVEGGQATMLDIDFGTYPFVTSSS 255
DT + INE+I +K+L EG Q T+LDIDFGTYPFVTSS+
Sbjct: 150 --------------------DTSYLINEAIQAGKKVLFEGAQGTLLDIDFGTYPFVTSSN 189
Query: 256 PSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEILGQGGDHLRLAGQEFGTTTG 315
+AGG CTGLGI PR +G +IGVVKAYTTRVGSGPFPTE+ + GD LR AG EFGTTTG
Sbjct: 190 TTAGGACTGLGIPPRKIGRVIGVVKAYTTRVGSGPFPTELFDETGDKLREAGHEFGTTTG 249
Query: 316 RPRRCGWLDIVALKYCCQINGFSSLNLTKLDVLSELPEIQLGVAYKRVDGTPIKSFPADL 375
RPRRCGWLD+VALKY +ING + L LTKLDVL L EI++ VAY+ DG I FPADL
Sbjct: 250 RPRRCGWLDLVALKYAVRINGVTELALTKLDVLDGLDEIKVCVAYEL-DGKEIDYFPADL 308
Query: 376 VLLEQLKVEYEVLPGWQSDISSIRNYSDLPKAARQFVERIEELVGVPINYIGVGP 430
LE+++ YE LPGW+ DIS +R+Y DLP+ A+ +++RIEELVGVPI+ I VGP
Sbjct: 309 EDLEKVEPVYETLPGWKEDISGVRSYDDLPENAQNYIKRIEELVGVPISIISVGP 363
>gnl|CDD|240376 PTZ00350, PTZ00350, adenylosuccinate synthetase; Provisional.
Length = 436
Score = 631 bits (1629), Expect = 0.0
Identities = 238/430 (55%), Positives = 316/430 (73%), Gaps = 7/430 (1%)
Query: 12 LLSQVSGVLGCQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPS 71
L S+V +LG QWGDEGKGKLVDIL+E DIVAR GGANAGHTI +GKK+ALHL+P
Sbjct: 10 LKSKVVVILGAQWGDEGKGKLVDILSEKADIVARFNGGANAGHTIV-VDGKKYALHLLPC 68
Query: 72 GILNEDTVCVIGNGVVVHLPGLFNEIDDLEANGVSCKGRILVSDRAHLLFDFHQEVDGLR 131
GIL + + V+GNGVV+HLP L EI+ L G++ GR+ +SDRAHL+FD HQ +DG++
Sbjct: 69 GILYPNCINVLGNGVVIHLPSLLEEIEQLTKKGINLLGRLYISDRAHLVFDLHQAIDGIQ 128
Query: 132 EAELVKS--FIGTTRRGIGPAYSSKVIRSGIRVSDLRHMDTFPQKLDFLLSNAAARFPGF 189
E+E K IGTT+RGIGP YS+K R+G+RV DL + +TF +K L+ ++
Sbjct: 129 ESEKGKGGTQIGTTKRGIGPCYSTKASRTGLRVGDLLNFETFEKKYRKLVEKLQEQYNIE 188
Query: 190 KYTPHMLREEVEKYKRIAERLEPFVVDTVHFINESIAQKRKILVEGGQATMLDIDFGTYP 249
+Y EE+E+YK AE+L+ +VDTV+F+N++I + +++LVEG ATMLDIDFGTYP
Sbjct: 189 EYD---AEEELERYKGYAEKLKDMIVDTVYFMNKAIKEGKRVLVEGANATMLDIDFGTYP 245
Query: 250 FVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEILGQGGDHLRLAGQE 309
+VTSS+ + GG+CTGLGI P + +IGVVKAYTTRVG GPFPTE+ + GD+LR G E
Sbjct: 246 YVTSSNTTVGGVCTGLGIPPNAIILVIGVVKAYTTRVGEGPFPTELFDENGDYLRKKGHE 305
Query: 310 FGTTTGRPRRCGWLDIVALKYCCQINGFSSLNLTKLDVLSELPEIQLGVAYK-RVDGTPI 368
+GTTTGRPRRCGWLDI AL+Y INGF S+NLTKLDVLS L EI++ V YK + G I
Sbjct: 306 YGTTTGRPRRCGWLDIPALRYVQMINGFDSINLTKLDVLSGLKEIKICVNYKNKGTGLEI 365
Query: 369 KSFPADLVLLEQLKVEYEVLPGWQSDISSIRNYSDLPKAARQFVERIEELVGVPINYIGV 428
+P+ + LE+ + YE +PGW++DIS + + +LP+ A+++V IEEL+GVPI +IGV
Sbjct: 366 GRYPSSIEELEEYEPVYETMPGWKTDISKCKTFEELPENAQKYVLFIEELLGVPIVWIGV 425
Query: 429 GPGRDALIFK 438
GP R+ +I K
Sbjct: 426 GPNRENMIVK 435
>gnl|CDD|234904 PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.
Length = 430
Score = 611 bits (1578), Expect = 0.0
Identities = 221/424 (52%), Positives = 287/424 (67%), Gaps = 11/424 (2%)
Query: 19 VLGCQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDT 78
V+G QWGDEGKGK+VD+L+E D+V R QGG NAGHT+ +GKK+ LHL+PSGIL
Sbjct: 6 VVGTQWGDEGKGKIVDLLSERADVVVRFQGGHNAGHTLV-IDGKKYKLHLIPSGILRPGK 64
Query: 79 VCVIGNGVVVHLPGLFNEIDDLEANGVSCKGRILVSDRAHLLFDFHQEVDGLREAELVKS 138
CVIGNGVV+ L EID+LEA GV + R+ +S+RAHL+ +H+ +D RE K
Sbjct: 65 TCVIGNGVVLDPEALLKEIDELEARGVDVRERLRISERAHLILPYHRALDKAREKARGKK 124
Query: 139 FIGTTRRGIGPAYSSKVIRSGIRVSDLRHMDTFPQKLDFLLS--NAAARFPGFKY--TPH 194
IGTT RGIGPAY KV R GIRV DL +TF +KL+ L N KY
Sbjct: 125 KIGTTGRGIGPAYEDKVARRGIRVGDLLDPETFAEKLEENLEYKNFLLT----KYYGAEA 180
Query: 195 MLREEV-EKYKRIAERLEPFVVDTVHFINESIAQKRKILVEGGQATMLDIDFGTYPFVTS 253
+ EE+ ++Y AERL+P+V DT +N+++ +++L EG Q T+LDID GTYPFVTS
Sbjct: 181 VDFEEILDEYLEYAERLKPYVTDTSLLLNDALKAGKRVLFEGAQGTLLDIDHGTYPFVTS 240
Query: 254 SSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEILGQGGDHLRLAGQEFGTT 313
S+ +AGG TG G+ P + ++G+ KAYTTRVGSGPFPTE+ + G+HLR G EFGTT
Sbjct: 241 SNTTAGGAATGSGVGPTKIDYVLGIAKAYTTRVGSGPFPTELFDEVGEHLRERGHEFGTT 300
Query: 314 TGRPRRCGWLDIVALKYCCQINGFSSLNLTKLDVLSELPEIQLGVAYKRVDGTPIKSFPA 373
TGRPRRCGW D VAL+Y ++NG + L LTKLDVL L EI++ VAY+ +DG I FPA
Sbjct: 301 TGRPRRCGWFDAVALRYAVRVNGLTGLALTKLDVLDGLEEIKICVAYE-LDGKRIDYFPA 359
Query: 374 DLVLLEQLKVEYEVLPGWQSDISSIRNYSDLPKAARQFVERIEELVGVPINYIGVGPGRD 433
L L + + YE LPGW + +R++ DLP+ AR++++RIEEL GVPI+ I GP RD
Sbjct: 360 SLEDLARCEPIYEELPGWSESTTGVRSFDDLPENARKYIKRIEELTGVPISIISTGPDRD 419
Query: 434 ALIF 437
I
Sbjct: 420 QTII 423
>gnl|CDD|223182 COG0104, PurA, Adenylosuccinate synthase [Nucleotide transport and
metabolism].
Length = 430
Score = 573 bits (1478), Expect = 0.0
Identities = 214/422 (50%), Positives = 281/422 (66%), Gaps = 4/422 (0%)
Query: 19 VLGCQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDT 78
V+G QWGDEGKGK+VD LA+ D+V R QGG NAGHT+ G+K+ LHL+PSGIL
Sbjct: 6 VVGAQWGDEGKGKIVDYLADRADVVVRYQGGHNAGHTV-VVNGEKYKLHLIPSGILRPGA 64
Query: 79 VCVIGNGVVVHLPGLFNEIDDLEANGVS-CKGRILVSDRAHLLFDFHQEVDGLREAELVK 137
VIGNGVVV L EI++LE GV + R+ +SDRAHL+ +H E+D RE L K
Sbjct: 65 TLVIGNGVVVDPEVLLKEIEELEERGVDVVRDRLRISDRAHLILPYHIELDRAREKALGK 124
Query: 138 SFIGTTRRGIGPAYSSKVIRSGIRVSDLRHMDTFPQKLDFLLSNAAARFPGFKYTPHMLR 197
IGTT RGIGPAY KV R GIRV DL +T +KL+ LL + + +
Sbjct: 125 KKIGTTGRGIGPAYEDKVARRGIRVGDLLDPETLREKLERLLEYKNFQLVKYYGAEAVDF 184
Query: 198 EEV-EKYKRIAERLEPFVVDTVHFINESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSP 256
E++ ++Y AERL+P+V D +N+++ +++L EG Q T+LDID GTYP+VTSS+
Sbjct: 185 EDILDEYYEYAERLKPYVTDVSVLLNDALDAGKRVLFEGAQGTLLDIDHGTYPYVTSSNT 244
Query: 257 SAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEILGQGGDHLRLAGQEFGTTTGR 316
+AGG+ TG G+ P + +IGV KAYTTRVG GPFPTE+ + G+ LR G E+GTTTGR
Sbjct: 245 TAGGVATGSGVGPTKIDYVIGVFKAYTTRVGEGPFPTELFDEVGEKLREVGHEYGTTTGR 304
Query: 317 PRRCGWLDIVALKYCCQINGFSSLNLTKLDVLSELPEIQLGVAYKRVDGTPIKSFPADLV 376
PRRCGW D V L+Y +ING + L +TKLDVL L EI++ VAY+ DG I FPADL
Sbjct: 305 PRRCGWFDAVLLRYAVRINGITGLAITKLDVLDGLDEIKICVAYEI-DGKRIDYFPADLD 363
Query: 377 LLEQLKVEYEVLPGWQSDISSIRNYSDLPKAARQFVERIEELVGVPINYIGVGPGRDALI 436
L + + YE LPGW D + +++Y DLP+ AR++++RIEELVGVP+ I GP R+ I
Sbjct: 364 DLARCEPIYETLPGWSEDTTGVKSYDDLPENARKYIKRIEELVGVPVTIISTGPEREDTI 423
Query: 437 FK 438
Sbjct: 424 IL 425
>gnl|CDD|232863 TIGR00184, purA, adenylosuccinate synthase. Alternate name
IMP--aspartate ligase [Purines, pyrimidines,
nucleosides, and nucleotides, Purine ribonucleotide
biosynthesis].
Length = 425
Score = 488 bits (1259), Expect = e-172
Identities = 209/419 (49%), Positives = 282/419 (67%), Gaps = 3/419 (0%)
Query: 19 VLGCQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDT 78
V+G QWGDEGKGK+VD+LA+ DIVAR QGG NAGHTI +G K+ LHL+PSG L D
Sbjct: 2 VVGGQWGDEGKGKIVDLLADKPDIVARYQGGHNAGHTI-VIDGVKYGLHLIPSGFLYPDA 60
Query: 79 VCVIGNGVVVHLPGLFNEIDDLEANGVSCKGRILVSDRAHLLFDFHQEVDGLREAELVKS 138
+IGNGVVV L E++ LE G+S + R+ VS R HL+ +H+++D RE +
Sbjct: 61 KLLIGNGVVVDPEVLLKEMEYLEKRGISVRDRLFVSYRCHLILPYHKKLDKAREKSKLAK 120
Query: 139 FIGTTRRGIGPAYSSKVIRSGIRVSDLRHMDTFPQKL-DFLLSNAAARFPGFKYTPHMLR 197
IGTT +GIGPAY KV RSG+RV DL + F +K + L +K
Sbjct: 121 KIGTTGKGIGPAYEDKVARSGLRVGDLLDDEAFAEKAKNILEYLNEQLVKYYKDEGVDYE 180
Query: 198 EEVEKYKRIAERLEPFVVDTVHFINESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSPS 257
+++++Y + AE L+PFVVD +NE++ + K+L EG Q TMLDID+GTYP+VTSS+ +
Sbjct: 181 KKLDEYMKYAEELKPFVVDVSVELNEALDEGEKVLFEGAQGTMLDIDYGTYPYVTSSNTT 240
Query: 258 AGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEILGQGGDHLRLAGQEFGTTTGRP 317
AGG+ TG+GI P V ++IGV KAYTTRVG+GPFPTE+ + G+ L G EFGTTTGR
Sbjct: 241 AGGVATGVGIGPTKVDEVIGVFKAYTTRVGAGPFPTELSDEEGEKLGTKGAEFGTTTGRR 300
Query: 318 RRCGWLDIVALKYCCQINGFSSLNLTKLDVLSELPEIQLGVAYKRVDGTPIKSFPADLVL 377
RRCGW D+VA +Y C++NG + L LTKLDVL + EI++ VAY+ G ++ FP DL
Sbjct: 301 RRCGWFDLVAARYACRLNGATQLALTKLDVLDGIDEIKVCVAYRM-KGEILELFPLDLKD 359
Query: 378 LEQLKVEYEVLPGWQSDISSIRNYSDLPKAARQFVERIEELVGVPINYIGVGPGRDALI 436
L+ ++ YE LPGW + + + YSDLP+ A++++ERIEEL GVP+ I GP R+ I
Sbjct: 360 LKGVEPIYETLPGWDKECTGVTEYSDLPENAKKYIERIEELTGVPVTIISTGPEREQTI 418
>gnl|CDD|184325 PRK13786, PRK13786, adenylosuccinate synthetase; Provisional.
Length = 424
Score = 388 bits (997), Expect = e-132
Identities = 187/421 (44%), Positives = 266/421 (63%), Gaps = 7/421 (1%)
Query: 21 GCQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDTVC 80
G Q+GDEGKGK+VD+LA+ +DIVAR QGG NAGHT+ + + + LHL+PSG L + V
Sbjct: 7 GAQFGDEGKGKIVDLLAKDYDIVARFQGGDNAGHTVKVGD-EVYKLHLIPSGFLLDARV- 64
Query: 81 VIGNGVVVHLPGLFNEIDDLEANGVSCKGRIL-VSDRAHLLFDFHQEVDGLREAELVKSF 139
+IG GVV++ L EID LE +GV L + + ++ +H E+DGLRE+ +
Sbjct: 65 LIGPGVVLNPEVLAEEIDMLEKHGVKVDAEKLGIDAKTSIIMPYHIELDGLRESARTEK- 123
Query: 140 IGTTRRGIGPAYSSKVIRSGIRVSDLRHMDTFPQKLDFLLSNAAARFPGFKYTPHMLREE 199
IGTT+RGIG AY K+ R +R+SDL + ++L+ L P ++R+E
Sbjct: 124 IGTTKRGIGFAYIDKIARDEVRMSDLVDKERLMRRLEELAPQKEKEIKELGGDPSIVRDE 183
Query: 200 --VEKYKRIAERLEPFVVDTVHFINESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSPS 257
++KY + +L P++ D + IN+++ + + +L EG Q T LD+ GT FVTSSS
Sbjct: 184 ALIDKYLELGRQLAPYITDVSYEINKALDEGKSVLAEGAQGTHLDVIHGTQKFVTSSSTI 243
Query: 258 AGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEILGQGGDHLRLAGQEFGTTTGRP 317
AG C LG+ P V +++G+VKAY TRVG GP PTE+ + G+HL+ G EFGTTTGRP
Sbjct: 244 AGSACANLGVGPTRVDNVLGIVKAYITRVGEGPLPTELKDEAGEHLQDVGGEFGTTTGRP 303
Query: 318 RRCGWLDIVALKYCCQINGFSSLNLTKLDVLSELPEIQLGVAYKRVDGTPIKSFPADLVL 377
RRCGW D+ LK +NG++ + LTKLDVL+ L I++ V Y+ +DG + P
Sbjct: 304 RRCGWFDLPLLKKAIYLNGYTEIALTKLDVLTGLDPIKICVGYE-LDGEILDYPPELTSD 362
Query: 378 LEQLKVEYEVLPGWQSDISSIRNYSDLPKAARQFVERIEELVGVPINYIGVGPGRDALIF 437
L + YE L GW +D++ ++ Y DLP+ AR +VER+EEL+GVPI YI VGPGR+
Sbjct: 363 LARCVPVYEELEGWSTDLTEVKAYEDLPENARNYVERLEELMGVPIKYISVGPGREQTFK 422
Query: 438 K 438
K
Sbjct: 423 K 423
>gnl|CDD|172324 PRK13787, PRK13787, adenylosuccinate synthetase; Provisional.
Length = 423
Score = 381 bits (980), Expect = e-130
Identities = 178/420 (42%), Positives = 267/420 (63%), Gaps = 7/420 (1%)
Query: 19 VLGCQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDT 78
V+G QWGDEGK K++D L++ DI+ R QGGANAGHT+ GKK+ HLVPSG++ + T
Sbjct: 6 VVGTQWGDEGKAKVIDFLSKDTDIIVRYQGGANAGHTVV-VHGKKYVFHLVPSGVIYDQT 64
Query: 79 VCVIGNGVVVHLPGLFNEIDDLEANGVSCKGRILVSDRAHLLFDFHQEVDGLREAELVKS 138
+CVIGNGVV+ E D L+ G K ++L+SD HLLF +H ++D RE +
Sbjct: 65 ICVIGNGVVLDPLFFIEECDRLQKEGFPVKDKLLLSDACHLLFPYHSQIDSARETTSSQE 124
Query: 139 F-IGTTRRGIGPAYSSKVIRSGIRVSDLRHMDTFPQKLDFLLSNAAARFPGFKYTPHMLR 197
IGTT++GIG Y+ K++R+G+RV DL ++ ++L L+ P +
Sbjct: 125 HKIGTTKKGIGICYADKMMRTGLRVGDLLD-KSYKRRLKHLVDEKNRELDKLYGMPPVSY 183
Query: 198 EEVEKY-KRIAERLEPFVVDTVHFINESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSP 256
++ K ++ +++T ++++ + + +++L+EG Q T LD+DFGTYP+VTSS+P
Sbjct: 184 NDINDGLKFFLSKVGKNIINTAYYLDTELKKGKRVLLEGAQGTGLDVDFGTYPYVTSSNP 243
Query: 257 SAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEILGQGGDHLRLAGQEFGTTTGR 316
+ GG G GI+ + + +IG+ KAYTTRVG GPFPTE+LG+ G+ LR G EFG TTGR
Sbjct: 244 TTGGALIGTGISFQHLKHVIGITKAYTTRVGEGPFPTELLGEAGEVLRQKGGEFGATTGR 303
Query: 317 PRRCGWLDIVALKYCCQINGFSSLNLTKLDVLSELPEIQLGVAYKRVDGTPIKSFPADLV 376
PRRCGW D+ LK+ +ING +S+ LTK+D+LS+ I + V YK ++G + FP+
Sbjct: 304 PRRCGWFDVEMLKHSVRINGITSIALTKIDILSDYDTIPVAVGYK-LNGKTLDCFPSQ-- 360
Query: 377 LLEQLKVEYEVLPGWQSDISSIRNYSDLPKAARQFVERIEELVGVPINYIGVGPGRDALI 436
LE+++ YE PGW+ DIS I + LP+ + ++ +E+ +GV IN + GP R I
Sbjct: 361 GLEKVEPLYEEFPGWKDDISGINEFQKLPEKCKNYISALEKWIGVKINLVSTGPDRKDTI 420
>gnl|CDD|184326 PRK13788, PRK13788, adenylosuccinate synthetase; Provisional.
Length = 404
Score = 378 bits (973), Expect = e-129
Identities = 180/419 (42%), Positives = 252/419 (60%), Gaps = 33/419 (7%)
Query: 19 VLGCQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDT 78
++G QWGDEGKGK+VD LA D V R QGGANAGHT+ A+GK F L+L+PSG+L+
Sbjct: 6 IIGAQWGDEGKGKVVDALAPEADFVVRYQGGANAGHTV-VAKGKTFKLNLLPSGVLHPHA 64
Query: 79 VCVIGNGVVVHLPGLFNEIDDLEANGVSCKGRILVSDRAHLLFDFHQEVDGLREAELVKS 138
V+G+G+V+ E ++L A G++ ++L+S+RAHL+ H+ VDG K+
Sbjct: 65 TSVLGDGMVIDPFRFAEERENLRAGGLN--PKLLISERAHLVLPHHKYVDGR------KN 116
Query: 139 FIGTTRRGIGPAYSSKVIRSGIRVSDLRHMDTFPQKLDFLLSNAAARFPGFKYTPHMLRE 198
F+GTT RGIGPAYS + R GIR DL ++++ LL + +
Sbjct: 117 FVGTTGRGIGPAYSDRARRVGIRFGDLLDEAVLRERVERLLEAKPNSTREAGWDTV--EK 174
Query: 199 EVEKYKRIAERLEPFVVDTVHFINESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSPSA 258
+ + E L PF+ DT + E+I + +++L EG QAT+LD+++GTYP+VTSS P+
Sbjct: 175 ALADLAPMREILLPFIADTGSLLREAIREGKRVLFEGAQATLLDLNYGTYPYVTSSHPTV 234
Query: 259 GGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEILGQGGDHLRLAG----QEFGTTT 314
GGI G G+ + + + GV KA+TTRVG GPFPTE+ G+ LR G EFGTTT
Sbjct: 235 GGILVGAGVNHKAINKVYGVAKAFTTRVGHGPFPTEVFGEMAIRLRGKGGNPWDEFGTTT 294
Query: 315 GRPRRCGWLDIVALKYCCQINGFSSLNLTKLDVLSELPEIQLGVAYKRVDGTPIKSFPAD 374
GR RR GWLD+V LKY C++NGF L LTKLDVLS L ++++ V Y DG P+
Sbjct: 295 GRARRVGWLDLVLLKYACEVNGFDGLVLTKLDVLSGLEKVKVCVEY-DDDGQPV------ 347
Query: 375 LVLLEQLKVEYEVLPGWQSDISSIRNYSDLPKAARQFVERIEELVGVPINYIGVGPGRD 433
Y+ LPGW D+ +++ LPK A+ ++E IEE GVP+ P R+
Sbjct: 348 ----------YKELPGW-GDLDGVKSREALPKEAQAYLELIEETTGVPVVMFSTSPRRE 395
>gnl|CDD|237505 PRK13783, PRK13783, adenylosuccinate synthetase; Provisional.
Length = 404
Score = 358 bits (920), Expect = e-121
Identities = 171/413 (41%), Positives = 248/413 (60%), Gaps = 22/413 (5%)
Query: 19 VLGCQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDT 78
++G QWGDEGKGK+V L+ ++DIV R GGANAGHT+ + K HL+PS ++
Sbjct: 5 IVGLQWGDEGKGKVVTYLSRYYDIVVRYSGGANAGHTVNYGD-FKVVHHLLPSADFKKNV 63
Query: 79 VCVIGNGVVVHLPGLFNEIDDLEANGVSCKGRILVSDRAHLLFDFHQEVDGLREAELVKS 138
IGNGVV+ L L E+++L+ GRI +S+ AH++ H+E+D + E + K+
Sbjct: 64 GAAIGNGVVLDLEVLVEELEELKEKFPDYSGRIFISELAHVVLPVHKELDEIIE-SVRKN 122
Query: 139 FIGTTRRGIGPAYSSKVIRSGIRVSDLRHMDTFPQKLDFLLSNAAARFPGFKYTPHMLRE 198
IGTT+RGIGPAY+ KV+R G+R++DL + + L+ +LS + G ++ + E
Sbjct: 123 AIGTTKRGIGPAYADKVMRVGVRLADLFDEEKLREFLEKILS-LYKKLYGIEFDVEKMME 181
Query: 199 EV-EKYKRIAERLEPFVVDTVHFINESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSPS 257
++ Y E+++ VV V + +K +L EG Q +LD+D GTYP+VTSS+ S
Sbjct: 182 DLLTFY----EKIKDLVVSPVEIKRI-LEEKS-VLFEGTQGVLLDLDVGTYPYVTSSNCS 235
Query: 258 AGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEILGQGGDHLRLAGQEFGTTTGRP 317
G+ G+G P V ++IGV KAYTTRVG GPFPTE+ G+ G+ LR AG E+G TTGRP
Sbjct: 236 TTGVSAGMGF-PVKVDEVIGVFKAYTTRVGEGPFPTELFGEEGEKLRKAGHEYGATTGRP 294
Query: 318 RRCGWLDIVALKYCCQINGFSSLNLTKLDVLSELPEIQLGVAYKRVDGTPIKSFPADLVL 377
RRCGWLD+ L+Y +++G SL +TK DVL+ +I++ V Y+ G P+ L
Sbjct: 295 RRCGWLDLPLLRYAIEVSGVDSLVMTKADVLNGFEKIKVCVRYE--IGGKEVRDPSSLRD 352
Query: 378 LEQLKVEYEVLPGWQSDISSIRNYSDLPKAARQFVERIEELVGVPINYIGVGP 430
LE+ + YE GW+S +N+ FV+ IE G I YI GP
Sbjct: 353 LEKAEPVYEEFDGWKSLED--KNFLK-------FVDFIERETGRKIAYISTGP 396
>gnl|CDD|237506 PRK13785, PRK13785, adenylosuccinate synthetase; Provisional.
Length = 454
Score = 337 bits (866), Expect = e-112
Identities = 171/451 (37%), Positives = 254/451 (56%), Gaps = 40/451 (8%)
Query: 19 VLGCQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDT 78
++G Q GDEGKG +VD+ + D+V R QGG NAGHT+ G+++ L LVPSG +
Sbjct: 5 IVGSQLGDEGKGGVVDLYGDAADVVVRYQGGDNAGHTVV-HGGEEYKLSLVPSGAV-RGK 62
Query: 79 VCVIGNGVVVHLPGLFNEIDDLEANGVSCKGRILVSDRAHLLFDFHQEVDGLREAELVKS 138
+ V+GNG VV+ LF+EID L G+ R V++RAH++ +H+ +DG+ E KS
Sbjct: 63 IGVLGNGCVVNPETLFDEIDALRERGLDPDVR--VAERAHVILPYHRVLDGIEEE--AKS 118
Query: 139 ----FIGTTRRGIGPAYSSKVIRSGIRVSDLRHMDTFPQKLDFLLSNAAARFPG-FKYTP 193
+GTT RGIGP Y K R G+RV DL D +L++++ A +
Sbjct: 119 DSDLEVGTTGRGIGPTYEDKAGRRGVRVGDLLDPDVLRDRLEYVVPQKRALAEDVYGLDA 178
Query: 194 HMLREE------VEKYKRIAERL--EPFVVDTVHFINESIAQKRKILVEGGQATMLDIDF 245
E E+Y+ ERL E V+ F+ E I +++EG Q T +DID
Sbjct: 179 SETPEAFDVDALFEEYREYGERLAEEDMTVNAGDFLAERIDDGDNVMLEGAQGTSIDIDH 238
Query: 246 GTYPFVTSSSPSAGGICTGLGIAPRVVGD--LIGVVKAYTTRVGSGPFPTEILGQGGD-- 301
G YP+VTSS+P+AGG TG G+ P VVG ++G+VKAY +RVGSGP PTE+ G GD
Sbjct: 239 GNYPYVTSSNPTAGGAATGTGLGPTVVGQGEVVGIVKAYLSRVGSGPLPTELGGVEGDTP 298
Query: 302 -------------HLRLAGQEFGTTTGRPRRCGWLDIVALKYCCQINGFSSLNLTKLDVL 348
++R G E+GT TGRPRR GWLD+ L++ + +GF+ L + +DVL
Sbjct: 299 DEGGRPDEEELATYIREEGGEYGTVTGRPRRVGWLDMPMLRHAARASGFTGLAINHIDVL 358
Query: 349 SELPEIQLGVAYKRVDGTPIKSFPADLVLLEQLKVEYEVLPGWQS-DISSI--RNYSDLP 405
+ L E+++G +Y+ DG + + PA + + + GW D +++ Y LP
Sbjct: 359 AGLDEVKVGHSYEL-DGEELLTMPATTERWARCEPNFRSFDGWPEVDWAAVAEEGYDALP 417
Query: 406 KAARQFVERIEELVGVPINYIGVGPGRDALI 436
+ AR ++E + + + PI +GVGPGR+ +
Sbjct: 418 ENARTYLEYVSDELDTPIYAVGVGPGREETV 448
>gnl|CDD|172322 PRK13784, PRK13784, adenylosuccinate synthetase; Provisional.
Length = 428
Score = 313 bits (803), Expect = e-103
Identities = 168/422 (39%), Positives = 250/422 (59%), Gaps = 10/422 (2%)
Query: 19 VLGCQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDT 78
++G QWGDEGKGK+ D LAE D+V R QGG NAGHT+ GKK LHL+PSG+L++ T
Sbjct: 6 IVGAQWGDEGKGKIADTLAEKADLVVRYQGGNNAGHTLV-VNGKKTFLHLIPSGVLHQHT 64
Query: 79 VCVIGNGVVVHLPGLFNEIDDLEANGVSCKGR-ILVSDRAHLLFDFHQEVDGLREAELVK 137
CVIG+GVV+ L EI L+A G++ + VS+ ++ +H+ +D +RE+ +
Sbjct: 65 KCVIGHGVVLDPVALDEEITRLQAKGIAISAENLFVSESCTIITSYHKLLDAVRESNTSE 124
Query: 138 SFIGTTRRGIGPAYSSKVIRSGIRVSDLRHMDTFPQKLDFLLSNAAARFPG-FKYTPHML 196
IGTT +GIGPAY KV R GI+ L D +L L+ F +K L
Sbjct: 125 K-IGTTGKGIGPAYEDKVSRKGIKFKHLFDKDLLRSRLAISLAEKETLFRDLYKVEYPTL 183
Query: 197 REEVEKYKRIAERLEPFVVDTVHFINESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSP 256
+E +K + ++L+ + DT I+++IA + ++ EG Q +LD+D+GTYPFVTSS+
Sbjct: 184 EQEFDKLFALGQKLKQYAADTFSIIDQAIAAGKNVVYEGAQGVLLDVDYGTYPFVTSSNT 243
Query: 257 SAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEILGQGGDHLRLAGQEFGTTTGR 316
S G+ +G A + +IG+ KAYTTRVG GPFPTE+ G ++ G E G TTGR
Sbjct: 244 SVAGVYSGATTAGHGLDHVIGITKAYTTRVGEGPFPTELFDDVGKFIQHKGGEIGVTTGR 303
Query: 317 PRRCGWLDIVALKYCCQINGFSSLNLTKLDVLSELPEIQLGVAYKRVDGTPIKSFPA-DL 375
RRCGWLD+ LKY + + +S+ LTK+DVLS++ +++ + YK ++P DL
Sbjct: 304 IRRCGWLDLPLLKYSAKCSNLTSIALTKVDVLSDMDTLKVCIGYKYEGKEIYCAYPGIDL 363
Query: 376 VLLEQLKVEYEVLPGWQSDISSIRNYSDLPKAARQFVERIEELVGVPINYIGVGPGRDAL 435
+E + VE E I ++P A + +++ IE VG+PI+ + GP R+ +
Sbjct: 364 YKVEPILVEMEPF-----SIDETVTKDNMPAALKTYLKTIENHVGIPISSLAYGPSREQI 418
Query: 436 IF 437
+F
Sbjct: 419 LF 420
>gnl|CDD|179812 PRK04293, PRK04293, adenylosuccinate synthetase; Provisional.
Length = 333
Score = 237 bits (607), Expect = 4e-75
Identities = 128/414 (30%), Positives = 189/414 (45%), Gaps = 97/414 (23%)
Query: 19 VLGCQWGDEGKGKLVDILA--EHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNE 76
V+G +GDEGKGK++ LA + I+AR G NAGHT+ GKK+ L ++PSG +N+
Sbjct: 6 VVGGFFGDEGKGKIIAYLALKDKPSIIARGGVGPNAGHTV-EYNGKKYGLRMIPSGFVNK 64
Query: 77 DTVCVIGNGVVVHLPGLFNEIDDLEANGVSCKGRILVSDRAHLLFDFHQEVDGLREAELV 136
D IG GV+V L E+++L GR+ V R ++ + H E D R E +
Sbjct: 65 DAKLAIGAGVLVDPEVLLKEVEELN-----VGGRVFVDYRCGIIEEKHVEED--RSDEHL 117
Query: 137 KSFIGTTRRGIGPAYSSKVIRSGIRVSDLRHMDTFPQKLDFLLSNAAARFPGFKYTPHML 196
IG+T G GPA + +V+R
Sbjct: 118 SKKIGSTGTGCGPANADRVLRRL------------------------------------- 140
Query: 197 REEVEKYKRIAERLEPFVVDTVHFINESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSP 256
K + E LE ++ D +NE++ + +L+EG Q L + +GTYP+VTS
Sbjct: 141 -----KLAKDVEELEKYLTDVPEEVNEALDRGENVLIEGTQGFGLSLYYGTYPYVTSKDT 195
Query: 257 SAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEILGQGGDHLRLAGQEFGTTTGR 316
+A GI + +G+ P V ++I V K+Y TRVG GPFPTE+ + + +L E+GT TGR
Sbjct: 196 TASGIASDVGVGPTKVDEVIVVFKSYPTRVGEGPFPTELSLEEAE--KLGLVEYGTVTGR 253
Query: 317 PRRCGWLDIVALKYCCQINGFSSLNLTKLDVLSELPEIQLGVAYKRVDGTPIKSFPADLV 376
RR G D + +ING + + +TKLD L
Sbjct: 254 RRRVGPFDFELARRAARINGATQIAITKLDKL----------------------DK---- 287
Query: 377 LLEQLKVEYEVLPGWQSDISSIRNYSDLPKAARQFVERIEELVGVPINYIGVGP 430
+ + Y LP A++F+E IEE +GVP+ I GP
Sbjct: 288 -----------------EAYGVTEYDKLPPEAKKFIEEIEEELGVPVTLISTGP 324
>gnl|CDD|173544 PTZ00351, PTZ00351, adenylosuccinate synthetase; Provisional.
Length = 710
Score = 80.5 bits (198), Expect = 4e-16
Identities = 90/337 (26%), Positives = 152/337 (45%), Gaps = 46/337 (13%)
Query: 1 VTANESPNRIELLSQVSGVLGCQWGDEGKGKLVDILAEH--FDIVARCQGGANAGHTIYN 58
+ +S RI V V G +GDEGKGK VD +A H +AR G NAGHT+Y+
Sbjct: 156 TSLKDSLYRIVEAHDVIMVAGAFFGDEGKGKTVDAVAHHPLCTCIARVNSGENAGHTVYD 215
Query: 59 AEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLF--NEIDDLEANGVSCKGRILVSDR 116
G+KF +L PSG+L IG V+ P F EI L G+ + R+ + +
Sbjct: 216 KAGRKFVFNLAPSGLLLPGKRNYIGPECVMD-PVSFMEKEIIQLIDAGIDYRDRLFIGNV 274
Query: 117 AHLLFDFHQEVDGLREAELVKSFIGTTRRGIGPAYSSKVIRSGIRVSDL----------- 165
++ +H+ +D L A +T +G+ P + SKV++ GIR+ +
Sbjct: 275 C-IVTPYHKLLDLLGSAA-----NSSTLKGMAPVHGSKVMKRGIRLDHIFNDDETLRKRL 328
Query: 166 -RHMDTFPQKLDFL-LSNA-------------AARFPGFKYTPHMLREEVEKYKRI-AER 209
+ MDT+ L LS+A R P + +++VE ++ +R
Sbjct: 329 EKDMDTYLGLLKVKNLSDADVVRLCREENSDGVVRVPDYVIAFAQAKDKVEFLVKLYRDR 388
Query: 210 LE-----PFVVDTVHFINESIAQKRKILVEGGQATML-DIDFGTYPFVTSSSPSAGGICT 263
+ P D + ++ ++ + K+L+EG Q+ L + + TS+ +A G+
Sbjct: 389 VRHNPDFPARCDVTYELHAAVLRGEKVLLEGPQSYWLSNARTKFWESTTSADTTAAGLLA 448
Query: 264 GLGIA-PRVVGDLIGVVKAY-TTRVGSGPFPTEILGQ 298
+ + ++ V KA ++RVG G P+ + Q
Sbjct: 449 ASQLNFQKFKSVVLNVHKAPGSSRVGIGACPSSFVPQ 485
Score = 39.3 bits (91), Expect = 0.004
Identities = 40/153 (26%), Positives = 62/153 (40%), Gaps = 29/153 (18%)
Query: 309 EFGTTTGRPRRCGWLDIVALKYCCQINGFSSLNLTKLDVLSELPEIQLGVAY-------K 361
E G T +PR CG+ D V I G L ++ LD E ++ + +AY K
Sbjct: 560 ECGAVTKKPRVCGFFDCVLQHEVNSIQG-PYLTISALDRGDEYDKVGVTIAYVYYNPEGK 618
Query: 362 RVD--------------GTPIKSFPADLVLLEQLKVEYEVLPGWQSD---ISSIRNYSDL 404
+VD G P+ S PA L +++ GW+ + + R + L
Sbjct: 619 QVDVNGHVYKNGDIIRAGDPVPSEPA----LYHCHPIVKLIDGWRDNPIAAAKRRRNAPL 674
Query: 405 PKAARQFVERIEELVGVPINYIGVGPGRDALIF 437
P+ + + IE I IG GP D +I+
Sbjct: 675 PRGVCELLSTIEYFTNCKILSIGNGPNGDDIIY 707
>gnl|CDD|148094 pfam06279, DUF1033, Protein of unknown function (DUF1033). This
family consists of several hypothetical bacterial
proteins. Many of the sequences in this family are
annotated as putative DNA binding proteins but the
function of this family is unknown.
Length = 120
Score = 29.7 bits (67), Expect = 1.2
Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 384 EYE---VLPGWQSDISSIRNYSDLPKAARQFVERIEEL 418
+YE W+ DI + + D +A + + + ++L
Sbjct: 10 DYEPWWFFDDWEEDIVEEKEFDDYEEALKYYKKLWQKL 47
>gnl|CDD|237389 PRK13456, PRK13456, DNA protection protein DPS; Provisional.
Length = 186
Score = 30.1 bits (68), Expect = 1.6
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 19/72 (26%)
Query: 155 VIRSGIRVSDLRHMDTFPQKLDFLLSNAAARFPGFKYTP----HMLREEVEKYKRIAE-- 208
V +SG+ V L ++ L+ NAAA F + Y H++ E E K IAE
Sbjct: 11 VEKSGVDVDKL---------VELLVKNAAAEFTTYYYYTILRAHLIGLEGEGLKEIAEDA 61
Query: 209 RLEPFVVDTVHF 220
RLE D HF
Sbjct: 62 RLE----DRNHF 69
>gnl|CDD|181766 PRK09295, PRK09295, bifunctional cysteine
desulfurase/selenocysteine lyase; Validated.
Length = 406
Score = 30.5 bits (69), Expect = 2.0
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 18/66 (27%)
Query: 214 VVDTVHFINESIAQKR----KILVEGGQATM--------LDIDFGTYPFVTSSSPSAGGI 261
V+ T + + E IA K+LV+G QA M LD DF +V S G
Sbjct: 176 VLGTENPLAEMIALAHQHGAKVLVDGAQAVMHHPVDVQALDCDF----YVFSGHKLYGP- 230
Query: 262 CTGLGI 267
TG+GI
Sbjct: 231 -TGIGI 235
>gnl|CDD|179473 PRK02794, PRK02794, DNA polymerase IV; Provisional.
Length = 419
Score = 29.9 bits (68), Expect = 3.2
Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 146 GIGPAYSSKVIRSGIR-VSDLRHMD 169
G+GPA ++++ R GIR + DL+ D
Sbjct: 216 GVGPATAARLARDGIRTIGDLQRAD 240
>gnl|CDD|225087 COG2176, PolC, DNA polymerase III, alpha subunit (gram-positive
type) [DNA replication, recombination, and repair].
Length = 1444
Score = 30.0 bits (68), Expect = 3.4
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 197 REEVEK-YK---RIAERLEPFVVDT--VHFINESIAQKRKILVEG-GQATMLDIDFG 246
+E +++ K ++ ++L VV T VH+++ RKILV G L+ F
Sbjct: 711 KEALKEIIKKLIKLGKKLNKPVVATGNVHYLDPEDKIYRKILVASQGLGNPLNRTFN 767
>gnl|CDD|238725 cd01448, TST_Repeat_1, Thiosulfate sulfurtransferase (TST),
N-terminal, inactive domain. TST contains 2 copies of
the Rhodanese Homology Domain; this is the 1st repeat,
which does not contain the catalytically active Cys
residue. The role of the 1st repeat is uncertain, but
it is believed to be involved in protein interaction.
Length = 122
Score = 28.0 bits (63), Expect = 4.0
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 19 VLGCQWGDEGKGKLVDILAEH------FDIVARCQGGANAGHTIYNAEGKKFALHLVPSG 72
+L +W + + L H FD+ + H + + E +FA L G
Sbjct: 18 ILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPE--EFAELLGSLG 75
Query: 73 ILNEDTVCVIGNG 85
I N+DTV V +G
Sbjct: 76 ISNDDTVVVYDDG 88
>gnl|CDD|240058 cd04703, Asparaginase_2_like, A subfamily of the L-Asparaginase
type 2-like enzymes. The wider family, a member of the
Ntn-hydrolase superfamily, includes
Glycosylasparaginase, Taspase 1 and L-Asparaginase type
2 enzymes. The proenzymes undergo autoproteolytic
cleavage before a threonine to generate alpha and beta
subunits. The threonine becomes the N-terminal residue
of the beta subunit and is the catalytic residue.
Length = 246
Score = 28.9 bits (65), Expect = 4.0
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 398 IRNYSDLPKAARQFVERIEELVGVPINYIGVGPGRDA 434
+ AA+ + R E GV I V P +
Sbjct: 197 LGTGDPAQDAAKAAISRFSEATGVTAGVIAVDPEEEG 233
>gnl|CDD|178601 PLN03033, PLN03033, 2-dehydro-3-deoxyphosphooctonate aldolase;
Provisional.
Length = 290
Score = 28.7 bits (64), Expect = 5.4
Identities = 19/56 (33%), Positives = 26/56 (46%)
Query: 44 ARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDD 99
A C A+ H++ GKK V SG L E C+ V V + G+F E+ D
Sbjct: 188 ANCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFMEVHD 243
>gnl|CDD|217632 pfam03599, CdhD, CO dehydrogenase/acetyl-CoA synthase delta
subunit.
Length = 384
Score = 29.0 bits (65), Expect = 5.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 394 DISSIRNYSDLPKAARQFVERIEELVGVPINYIGVGP 430
D+ +IR S PK + VE++ + V VP+ G P
Sbjct: 70 DMIAIRLISTDPKEFAKAVEKVLQAVDVPLVIGGSDP 106
>gnl|CDD|173171 PRK14708, PRK14708, flagellin; Provisional.
Length = 888
Score = 29.1 bits (65), Expect = 6.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 239 TMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGD 274
T L ++ T F TS +P I TG G+ R+ D
Sbjct: 339 TTLTVNGKTITFKTSDAPQGNNILTGSGVLGRIGTD 374
>gnl|CDD|181779 PRK09326, PRK09326, F420H2 dehydrogenase subunit F; Provisional.
Length = 341
Score = 28.7 bits (64), Expect = 7.0
Identities = 33/117 (28%), Positives = 44/117 (37%), Gaps = 15/117 (12%)
Query: 127 VDGLREAEL--VKSF------IGTTRRGIGPAYSSKVIRSG---IRVSDLRHMDTFPQKL 175
VDG E EL V+ F IG G+ A +++ G V R+ + +
Sbjct: 68 VDGYIEDELANVRKFFGARSNIGGQDGGVTSAILKSLLKQGEIDCAVGITRNEKWETELV 127
Query: 176 DFLLSNAAARFPGFKYTPH----MLREEVEKYKRIAERLEPFVVDTVHFINESIAQK 228
+ R G KYT LRE EKY RIA P I E++ K
Sbjct: 128 LLTSAEDVERTRGTKYTYDSVLSALREPFEKYDRIAVIGVPCQAHGARLIRENVNDK 184
>gnl|CDD|202335 pfam02662, FlpD, Methyl-viologen-reducing hydrogenase, delta
subunit. This family consist of
methyl-viologen-reducing hydrogenase, delta subunit /
heterodisulphide reductase. No specific functions have
been assigned to this subunit. The aligned region
corresponds to almost the entire delta chain sequence
and contains 4 conserved cysteine residues. However, in
two Archaeoglobus sequences this region corresponds to
only the C-terminus of these proteins.
Length = 124
Score = 27.6 bits (62), Expect = 7.3
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 397 SIRNYSDLPKAARQFVERIEEL 418
S +A +FVERI+EL
Sbjct: 102 SASEGRKFAEALNEFVERIKEL 123
>gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase.
Length = 958
Score = 28.8 bits (64), Expect = 8.3
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 190 KYTPHMLREEVEKYKRIAERLEPFVVDTVHFINESIAQKRKILVEGGQATML 241
K PH LR V + +R E +EP V E +A+K VE G+ T++
Sbjct: 384 KKEPHTLR--VPRSQRGGEVIEPLVSKQWFVTMEPLAEKALKAVENGELTII 433
>gnl|CDD|235729 PRK06185, PRK06185, hypothetical protein; Provisional.
Length = 407
Score = 28.3 bits (64), Expect = 8.4
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 10/41 (24%)
Query: 160 IRVSDLRHMDT-------FPQKLDFL--LSNAAARFPGFKY 191
+ ++D + T PQ DFL L+ A+ +P F
Sbjct: 87 VTLADFSRLPTPYPYIAMMPQW-DFLDFLAEEASAYPNFTL 126
>gnl|CDD|213990 cd07435, PHP_PolIIIA_POLC, Polymerase and Histidinol Phosphatase
domain of alpha-subunit of bacterial polymerase III at
PolC gene. DNA polymerase III alphas (PolIIIAs) that
contain a PHP domain have been classified into four
basic groups based on phylogenetic and domain structural
analyses: polC, dnaE1, dnaE2, and dnaE3. The PolC group
is distinct from the other three and is clustered
together. The PHP (also called histidinol
phosphatase-2/HIS2) domain is associated with several
types of DNA polymerases, such as PolIIIA and family X
DNA polymerases, stand alone histidinol phosphate
phosphatases (HisPPases), and a number of
uncharacterized protein families. DNA polymerase III
holoenzyme is one of the five eubacterial DNA
polymerases that are responsible for the replication of
the DNA duplex. The alpha subunit of DNA polymerase III
core enzyme catalyzes the reaction for polymerizing both
DNA strands. PolC PHP is located in different location
compare to dnaE1, 2, and 3. The PHP domain has four
conserved sequence motifs and and contains an invariant
histidine that is involved in metal ion coordination.The
PHP domain of PolC is structurally homologous to other
members of the PHP family that have a distorted
(beta/alpha)7 barrel fold with a trinuclear metal site
on the C-terminal side of the barrel. PHP domains found
in dnaEs of thermophilic origin exhibit 3'-5'
exonuclease activity. In contrast, PolC PHP lacks
detectable nuclease activity.
Length = 268
Score = 28.2 bits (64), Expect = 8.7
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 197 REEVEK-YKRI---AERLEPFVVDT--VHFINESIAQKRKILVEG 235
EE+++ KRI ++L VV T VH+++ R+IL+ G
Sbjct: 170 EEELKEINKRIIKLGKKLNKPVVATGDVHYLDPEDKIYREILLAG 214
>gnl|CDD|180367 PRK06046, PRK06046, alanine dehydrogenase; Validated.
Length = 326
Score = 28.1 bits (63), Expect = 9.1
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 394 DISSIRNYSDLPKAARQFVERIEELVGVPINYIGVGPGRDA 434
D+ +R Y +A +FVER+ +VG + +A
Sbjct: 153 DLEEVRVYDRTKSSAEKFVERMSSVVGCDVTV--AEDIEEA 191
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.141 0.420
Gapped
Lambda K H
0.267 0.0847 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,354,676
Number of extensions: 2387850
Number of successful extensions: 2378
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2313
Number of HSP's successfully gapped: 44
Length of query: 438
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 338
Effective length of database: 6,502,202
Effective search space: 2197744276
Effective search space used: 2197744276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.7 bits)