RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 045536
(438 letters)
>1dj2_A Adenylosuccinate synthetase; GDP, ligase; HET: GDP; 2.90A
{Arabidopsis thaliana} SCOP: c.37.1.10 PDB: 1dj3_A*
Length = 443
Score = 742 bits (1918), Expect = 0.0
Identities = 383/436 (87%), Positives = 409/436 (93%)
Query: 3 ANESPNRIELLSQVSGVLGCQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGK 62
A ES RI LSQVSGVLGCQWGDEGKGKLVDILA+HFDIVARCQGGANAGHTIYN+EGK
Sbjct: 8 ATESLGRIGSLSQVSGVLGCQWGDEGKGKLVDILAQHFDIVARCQGGANAGHTIYNSEGK 67
Query: 63 KFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDDLEANGVSCKGRILVSDRAHLLFD 122
KFALHLVPSGILNEDT CVIGNGVVVHLPGLF EID LE+NGVSCKGRILVSDRAHLLFD
Sbjct: 68 KFALHLVPSGILNEDTTCVIGNGVVVHLPGLFKEIDGLESNGVSCKGRILVSDRAHLLFD 127
Query: 123 FHQEVDGLREAELVKSFIGTTRRGIGPAYSSKVIRSGIRVSDLRHMDTFPQKLDFLLSNA 182
FHQEVDGLRE+EL KSFIGTT+RGIGPAYSSKVIR+GIRV DLRHMDT PQKLD LLS+A
Sbjct: 128 FHQEVDGLRESELAKSFIGTTKRGIGPAYSSKVIRNGIRVGDLRHMDTLPQKLDLLLSDA 187
Query: 183 AARFPGFKYTPHMLREEVEKYKRIAERLEPFVVDTVHFINESIAQKRKILVEGGQATMLD 242
AARF GFKYTP MLREEVE YKR A+RLEP++ DTVHFIN+SI+QK+K+LVEGGQATMLD
Sbjct: 188 AARFQGFKYTPEMLREEVEAYKRYADRLEPYITDTVHFINDSISQKKKVLVEGGQATMLD 247
Query: 243 IDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEILGQGGDH 302
IDFGTYPFVTSSSPSAGGICTGLGIAP VVGDLIGVVKAYTTRVGSGPFPTE LG GGD
Sbjct: 248 IDFGTYPFVTSSSPSAGGICTGLGIAPSVVGDLIGVVKAYTTRVGSGPFPTENLGTGGDL 307
Query: 303 LRLAGQEFGTTTGRPRRCGWLDIVALKYCCQINGFSSLNLTKLDVLSELPEIQLGVAYKR 362
LRLAGQEFGTTTGRPRRCGWLDIVALK+ CQINGF+SLNLTKLDVLS+L EIQLGVAYKR
Sbjct: 308 LRLAGQEFGTTTGRPRRCGWLDIVALKFSCQINGFASLNLTKLDVLSDLNEIQLGVAYKR 367
Query: 363 VDGTPIKSFPADLVLLEQLKVEYEVLPGWQSDISSIRNYSDLPKAARQFVERIEELVGVP 422
DGTP+KSFP DL LLE+L VEYEVLPGW+SDISS+RNYSDLPKAA+Q+VERIEELVGVP
Sbjct: 368 SDGTPVKSFPGDLRLLEELHVEYEVLPGWKSDISSVRNYSDLPKAAQQYVERIEELVGVP 427
Query: 423 INYIGVGPGRDALIFK 438
I+YIG+GPGRDALI+K
Sbjct: 428 IHYIGIGPGRDALIYK 443
>1p9b_A Adenylosuccinate synthetase; ligase; HET: IMO GDP; 2.00A
{Plasmodium falciparum} SCOP: c.37.1.10
Length = 442
Score = 679 bits (1756), Expect = 0.0
Identities = 184/425 (43%), Positives = 270/425 (63%), Gaps = 12/425 (2%)
Query: 19 VLGCQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDT 78
+LG QWGDEGKGK++D+L+E+ DI R GGANAGHTI KK+ALHL+P G+L ++
Sbjct: 19 ILGAQWGDEGKGKIIDMLSEYSDITCRFNGGANAGHTIS-VNDKKYALHLLPCGVLYDNN 77
Query: 79 VCVIGNGVVVHLPGLFNEIDDLEANGVSCKGRILVSDRAHLLFDFHQEVDGLREAELVK- 137
+ V+GNG+V+H+ L EI+ + + R+ +S++AH+LFD HQ +D ++E + +K
Sbjct: 78 ISVLGNGMVIHVKSLMEEIESVGGKLL---DRLYLSNKAHILFDIHQIIDSIQETKKLKE 134
Query: 138 -SFIGTTRRGIGPAYSSKVIRSGIRVSDLRHMDTFPQKLDFLLSNAAARFPGFKYTPHML 196
IGTT+RGIGP YS+K R GIR+ L++ + F L+ + + +Y
Sbjct: 135 GKQIGTTKRGIGPCYSTKASRIGIRLGTLKNFENFKNMYSKLIDHLMDLYNITEYDKE-- 192
Query: 197 REEVEKYKRIAERLEPFVVDTVHFINESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSP 256
+E+ + +L +VD + F+N ++ +K+L+EG A MLDIDFGTYP+VTSS
Sbjct: 193 -KELNLFYNYHIKLRDRIVDVISFMNTNLENNKKVLIEGANAAMLDIDFGTYPYVTSSCT 251
Query: 257 SAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEILGQGGDHLRLAGQEFGTTTGR 316
+ GG+ +GLGI + + ++GVVK+Y TRVG GPF TE+ G +LR G E+GTTT R
Sbjct: 252 TVGGVFSGLGIHHKKLNLVVGVVKSYLTRVGCGPFLTELNNDVGQYLREKGHEYGTTTKR 311
Query: 317 PRRCGWLDIVALKYCCQINGFSSLNLTKLDVLSELPEIQLGVAYK-RVDGTPIK--SFPA 373
PRRCGWLDI L Y IN +NLTKLDVLS L EI L V +K + G ++ +P
Sbjct: 312 PRRCGWLDIPMLLYVKCINSIDMINLTKLDVLSGLEEILLCVNFKNKKTGELLEKGCYPV 371
Query: 374 DLVLLEQLKVEYEVLPGWQSDISSIRNYSDLPKAARQFVERIEELVGVPINYIGVGPGRD 433
+ + E+ + YE GW+ DIS+ + +LP+ A++++ IE+ + PI +IGVGP R
Sbjct: 372 EEEISEEYEPVYEKFSGWKEDISTCNEFDELPENAKKYILAIEKYLKTPIVWIGVGPNRK 431
Query: 434 ALIFK 438
+I K
Sbjct: 432 NMIVK 436
>2v40_A Adenylosuccinate synthetase isozyme 2; ligase, purine biosynthesis,
metal- binding, purine metabolism, nucleotide-binding,
GDP, ADSS2, magnesium; HET: GDP; 1.9A {Homo sapiens}
PDB: 1iwe_A* 1j4b_A 1lny_A* 1lon_A* 1loo_A* 1mez_A*
1mf0_A* 1mf1_A* 2dgn_A*
Length = 459
Score = 678 bits (1753), Expect = 0.0
Identities = 213/444 (47%), Positives = 300/444 (67%), Gaps = 13/444 (2%)
Query: 1 VTANESPNRIELLSQVSGVLGCQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAE 60
+ P ++V+ VLG QWGDEGKGK+VD+LA+ DIV RCQGG NAGHT+ +
Sbjct: 18 LYFQSMPRARPGGNRVTVVLGAQWGDEGKGKVVDLLAQDADIVCRCQGGNNAGHTVV-VD 76
Query: 61 GKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDDLEANGVSCKG---RILVSDRA 117
++ HL+PSGI+N + IGNGVV+HLPGLF E + G +G R+++SDRA
Sbjct: 77 SVEYDFHLLPSGIINPNVTAFIGNGVVIHLPGLFEEAEKNVQKGKGLEGWEKRLIISDRA 136
Query: 118 HLLFDFHQEVDGLREAELVKSF---IGTTRRGIGPAYSSKVIRSGIRVSDLRH-MDTFPQ 173
H++FDFHQ DG++E + + +GTT++GIGP YSSK RSG+R+ DL D F +
Sbjct: 137 HIVFDFHQAADGIQEQQRQEQAGKNLGTTKKGIGPVYSSKAARSGLRMCDLVSDFDGFSE 196
Query: 174 KLDFLLSNAAARFPGFKYTPHMLREEVEKYKRIAERLEPFVVDTVHFINESI-AQKRKIL 232
+ L + + +P + E++K K E+++P V D V+F+ E++ +KIL
Sbjct: 197 RFKVLANQYKSIYPTLEIDIE---GELQKLKGYMEKIKPMVRDGVYFLYEALHGPPKKIL 253
Query: 233 VEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFP 292
VEG A +LDIDFGTYPFVTSS+ + GG+CTGLG+ P+ VG++ GVVKAYTTRVG G FP
Sbjct: 254 VEGANAALLDIDFGTYPFVTSSNCTVGGVCTGLGMPPQNVGEVYGVVKAYTTRVGIGAFP 313
Query: 293 TEILGQGGDHLRLAGQEFGTTTGRPRRCGWLDIVALKYCCQINGFSSLNLTKLDVLSELP 352
TE + G+ L+ G+EFG TTGR RRCGWLD+V LKY INGF++L LTKLD+L
Sbjct: 314 TEQDNEIGELLQTRGREFGVTTGRKRRCGWLDLVLLKYAHMINGFTALALTKLDILDMFT 373
Query: 353 EIQLGVAYKRVDGTPIKSFPADLVLLEQLKVEYEVLPGWQSDISSIRNYSDLPKAARQFV 412
EI++GVAYK +DG I PA+ +L +++V+Y+ LPGW +DIS+ R + +LP A+ +V
Sbjct: 374 EIKVGVAYK-LDGEIIPHIPANQEVLNKVEVQYKTLPGWNTDISNARAFKELPVNAQNYV 432
Query: 413 ERIEELVGVPINYIGVGPGRDALI 436
IE+ + +P+ +IGVG R+++I
Sbjct: 433 RFIEDELQIPVKWIGVGKSRESMI 456
>3hid_A Adenylosuccinate synthetase; niaid structural genomics, virulence
associated factor, PURA, purine ribonucleotide
biosynthesis, cytoplasm; 1.60A {Yersinia pestis CO92}
PDB: 1kjx_A* 1kkb_A* 1kkf_A* 1ade_A 1adi_A 1cg0_A*
1ch8_A* 1cib_A* 1gim_A* 1gin_A* 1hon_A* 1hoo_A* 1hop_A*
1juy_A* 1ksz_A* 1nht_A* 1qf4_A* 1qf5_A* 1son_A* 1soo_A*
...
Length = 432
Score = 631 bits (1631), Expect = 0.0
Identities = 193/421 (45%), Positives = 262/421 (62%), Gaps = 4/421 (0%)
Query: 19 VLGCQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDT 78
VLG QWGDEGKGK+VD+L E V R QGG NAGHT+ G+K LHL+PSGIL E+
Sbjct: 7 VLGTQWGDEGKGKVVDLLTERAKYVVRYQGGHNAGHTLVI-NGEKTVLHLIPSGILRENV 65
Query: 79 VCVIGNGVVVHLPGLFNEIDDLEANGVSCKGRILVSDRAHLLFDFHQEVDGLREAELVKS 138
+ +IGNGVV+ L E+ +LEA GV + R+L+S+ L+ +H +D RE
Sbjct: 66 ISIIGNGVVLAPDALMKEMTELEARGVPVRERLLLSEACPLILPYHVALDNAREKARGAK 125
Query: 139 FIGTTRRGIGPAYSSKVIRSGIRVSDLRHMDTFPQKLDFLLS--NAAARFPGFKYTPHML 196
IGTT RGIGPAY KV R G+RVSDL + +TF KL ++ N +K
Sbjct: 126 AIGTTGRGIGPAYEDKVARRGLRVSDLFNKETFAIKLKEIVEYHNFQLV-HYYKEAAVDY 184
Query: 197 REEVEKYKRIAERLEPFVVDTVHFINESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSP 256
++ ++ IA+ L VVD ++ + Q I+ EG Q T+LDID GTYP+VTSS+
Sbjct: 185 QKVLDDVLAIADILTAMVVDVSELLDNARKQGELIMFEGAQGTLLDIDHGTYPYVTSSNT 244
Query: 257 SAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEILGQGGDHLRLAGQEFGTTTGR 316
+AGG+ TG G+ PR V ++G+VKAY+TRVG+GPFPTE+ + G+ LR G E+G TTGR
Sbjct: 245 TAGGVATGSGLGPRYVDYVLGIVKAYSTRVGAGPFPTELNDETGEFLRKQGNEYGATTGR 304
Query: 317 PRRCGWLDIVALKYCCQINGFSSLNLTKLDVLSELPEIQLGVAYKRVDGTPIKSFPADLV 376
RR GWLDIVA++ QIN S +TKLDVL L E++L V Y+ DG + + P
Sbjct: 305 SRRTGWLDIVAVRRAVQINSLSGFCMTKLDVLDGLKEVKLCVGYRMPDGREVDTTPLAAE 364
Query: 377 LLEQLKVEYEVLPGWQSDISSIRNYSDLPKAARQFVERIEELVGVPINYIGVGPGRDALI 436
E ++ YE +PGW ++ +S LP+AA +++R+EEL GVPI+ I GP RD +
Sbjct: 365 GWEGIEPIYETMPGWSETTFGVKEHSKLPQAALNYIQRVEELTGVPIDIISTGPDRDETM 424
Query: 437 F 437
Sbjct: 425 I 425
>3r7t_A Adenylosuccinate synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha-beta
fold, cytosol; HET: CIT PGE; 2.30A {Campylobacter
jejuni}
Length = 419
Score = 627 bits (1619), Expect = 0.0
Identities = 177/418 (42%), Positives = 254/418 (60%), Gaps = 10/418 (2%)
Query: 19 VLGCQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDT 78
++G QWGDEGKGK+VD L E++D V R GG NAGHTI+ G ++ALHL+PSG+L+
Sbjct: 10 IVGIQWGDEGKGKVVDKLCENYDFVCRSAGGHNAGHTIW-VNGVRYALHLMPSGVLHPRC 68
Query: 79 VCVIGNGVVVHLPGLFNEIDDLEANGVSCKGRILVSDRAHLLFDFHQEVDGLREAELVKS 138
+ +IGNGVVV L E+ E GR+ +SDRAHL H +D +E K+
Sbjct: 69 INIIGNGVVVSPEVLIAEMAQFENLK----GRLYISDRAHLNLKHHSLIDIAKEKLKGKN 124
Query: 139 FIGTTRRGIGPAYSSKVIRSGIRVSDLRHMDTFPQKLDFLLSNAAARFPGFKYTPHMLRE 198
IGTT +GIGP+Y+ K+ R+G RV +L + L F + E
Sbjct: 125 AIGTTGKGIGPSYADKINRTGHRVGELLEPQRLCEALIKDFEANKTFFEMLEIEIPSAEE 184
Query: 199 EVEKYKRIAERLEPFVVDTVHFINESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSPSA 258
+ KR E L P++ DT + +++ + +++L+EG Q +MLDID GTYP+VTSSS +
Sbjct: 185 LLADLKRFNEILTPYITDTTRMLWKALDEDKRVLLEGAQGSMLDIDHGTYPYVTSSSTIS 244
Query: 259 GGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEILGQGGDHLRLAGQEFGTTTGRPR 318
G TGLG+ P+ G++IG+VKAY TRVG+G FPTE G+ G+ + G+E G +TGR R
Sbjct: 245 AGTLTGLGLNPKEAGNIIGIVKAYATRVGNGAFPTEDKGEDGEKIAQIGKEIGVSTGRKR 304
Query: 319 RCGWLDIVALKYCCQINGFSSLNLTKLDVLSELPEIQLGVAYKRVDGTPIKSFPADLVLL 378
RCGW D VA++Y ++NG +L+L KLDVL +I++ AY+ G I P+D L
Sbjct: 305 RCGWFDAVAVRYTARLNGLDALSLMKLDVLDGFEKIKICRAYE-YKGMEIDYIPSD---L 360
Query: 379 EQLKVEYEVLPGWQSDISSIRNYSDLPKAARQFVERIEELVGVPINYIGVGPGRDALI 436
E ++ YE + GW + I++Y LP+ A++++ R+EEL GV + YI P RD I
Sbjct: 361 ENVQPIYEEMDGWD-KVFGIKDYDLLPENAKKYIARLEELAGVKVKYISTSPERDDTI 417
>3ue9_A Adenylosuccinate synthetase; ssgcid, ligase, ADSS, BTH_I2245,
IMP-aspartate ligase, struc genomics; 1.95A
{Burkholderia thailandensis}
Length = 452
Score = 626 bits (1617), Expect = 0.0
Identities = 185/429 (43%), Positives = 239/429 (55%), Gaps = 13/429 (3%)
Query: 19 VLGCQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDT 78
V+G QWGDEGKGK+VD L +H V R QGG NAGHT+ GKK L L+PSGI+ E
Sbjct: 20 VVGTQWGDEGKGKIVDWLTDHAQGVVRFQGGHNAGHTLI-IGGKKTILRLIPSGIMREGV 78
Query: 79 VCVIGNGVVVHLPGLFNEIDDLEANGVSCKGRILVSDRAHLLFDFHQEVDGLREAELVKS 138
C IGNGVV+ LF EI +LE G+S + R+ +S+ L+ +H +D REA
Sbjct: 79 ACYIGNGVVLSPEALFKEIGELEEAGLSVRERLFISEATTLILPYHIAIDQAREARKGAG 138
Query: 139 FIGTTRRGIGPAYSSKVIRSGIRVSDLRHMDTFPQKLDFLLS--NAAARFPGFKYTPHML 196
IGTT RGIGPAY KV R +RV DL TF +L L N
Sbjct: 139 KIGTTGRGIGPAYEDKVGRRALRVQDLFDARTFADRLRENLDFHNFVLT-QYLGGAAVDF 197
Query: 197 REEVEKYKRIAERLEPFVVDTVHFINESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSP 256
+ ++ A+RL P V D + E R +L EG Q T+LDID GTYPFVTSS+
Sbjct: 198 QATLDTMLGYADRLRPMVADVSRRLYEENHAGRNLLFEGAQGTLLDIDHGTYPFVTSSNC 257
Query: 257 SAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEILGQG--------GDHLRLAGQ 308
AG G G+ P+ + ++G+ KAY TRVGSGPFP+E+ G L G+
Sbjct: 258 VAGAAAAGAGVGPQKLNYILGITKAYCTRVGSGPFPSELYDADNPSRQDQIGITLANVGK 317
Query: 309 EFGTTTGRPRRCGWLDIVALKYCCQINGFSSLNLTKLDVLSELPEIQLGVAYKRVDGTPI 368
EFG+ TGRPRR GWLD AL+ QING S L +TKLDVL L E++L V YK +DG
Sbjct: 318 EFGSVTGRPRRTGWLDAAALRRSIQINGVSGLCMTKLDVLDGLDEVKLCVGYK-IDGEDA 376
Query: 369 KSFPADLVLLEQLKVEYEVLPGWQSDISSIRNYSDLPKAARQFVERIEELVGVPINYIGV 428
P + + + YE GW+ I ++ LP AR ++ R++E+ GVPI+ +
Sbjct: 377 DLLPRGAAEVARCEPVYETFGGWKESTVGINSWDALPANARAYLTRVQEVAGVPIDMVST 436
Query: 429 GPGRDALIF 437
GP RD I
Sbjct: 437 GPDRDETIL 445
>2d7u_A Adenylosuccinate synthetase; structural genomics, conserved
hypothetical protein, NPPSFA; 2.50A {Pyrococcus
horikoshii}
Length = 339
Score = 479 bits (1235), Expect = e-170
Identities = 127/420 (30%), Positives = 196/420 (46%), Gaps = 94/420 (22%)
Query: 19 VLGCQWGDEGKGKLVDILA--EHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNE 76
V+G QWGDEGKG +V L+ + +I+AR G NAGH++ GKK+A+ +P+G +
Sbjct: 6 VVGGQWGDEGKGSIVAYLSLHDEPEIIARGGVGTNAGHSVV-INGKKYAVRQIPTGFMQT 64
Query: 77 DTVCVIGNGVVVHLPGLFNEIDDLEANGVSCKGRILVSDRAHLLFDFHQEVDGLREAELV 136
+IG GV+V F+E++ L+ V K R+ + R ++ + H+++D
Sbjct: 65 KARLLIGAGVLVDPEVFFHELEQLKDFNV--KDRVGIDYRCAIIEEKHKQLDRTNGYLHG 122
Query: 137 KSFIGTTRRGIGPAYSSKVIRSGIRVSDLRHMDTFPQKLDFLLSNAAARFPGFKYTPHML 196
K IGTT G GPA + +V+R + D++
Sbjct: 123 K--IGTTGSGCGPANADRVMRKAKQAKDVK------------------------------ 150
Query: 197 REEVEKYKRIAERLEPFVVDTVHFINESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSP 256
LEP++ D IN+++ + +LVEG Q L + +GTYP+VTS
Sbjct: 151 ------------ELEPYLTDVAQEINDALDEGSLVLVEGTQGFGLSLYYGTYPYVTSKDV 198
Query: 257 SAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEILGQGGDHLRLAGQEFGTTTGR 316
+A + +GI P V ++I V K++ TRVG+GPFPTE+ + D L E+GT TGR
Sbjct: 199 TASSVAADVGIGPTRVDEVIVVFKSFPTRVGAGPFPTEMPMEEADRLG--LVEYGTVTGR 256
Query: 317 PRRCGWLDIVALKYCCQINGFSSLNLTKLDVLSELPEIQLGVAYKRVDGTPIKSFPADLV 376
RR GW D +Y +ING + L +T LD +
Sbjct: 257 RRRVGWFDFEMARYSARINGATMLAVTMLDKYDK-------------------------- 290
Query: 377 LLEQLKVEYEVLPGWQSDISSIRNYSDLPKAARQFVERIEELVGVPINYIGVGPGRDALI 436
+ + +Y LP+ A++F+E IEE VGVP+ I GP + +I
Sbjct: 291 -----------------EAFGVTDYDKLPRKAKEFIEEIEERVGVPVGLIKTGPELEHII 333
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 3e-05
Identities = 71/425 (16%), Positives = 124/425 (29%), Gaps = 143/425 (33%)
Query: 111 ILVSDRAHLLF-----DFHQEV----DGLR-------EAELVKSFIGTTRRGIGPAYSSK 154
+LV + + F++ + +G AELV F+G + P+ +
Sbjct: 20 LLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQ 79
Query: 155 ---VIRSGIRVSDLRHMDTFPQKLDFLLSN----AAARFPGFKYTPHMLREEVEK-YKRI 206
V+ L + +L N AA+ T + +E+ K Y
Sbjct: 80 FDQVLNLC-----LTEFEN-----CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT- 128
Query: 207 AERLEPFVVDTVH---FINESIAQKRKILVE-GGQAT-------MLDIDFGTY-PFVT-- 252
A + D +++ GGQ + D+ + TY V
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL-YQTYHVLVGDL 187
Query: 253 ------------SSSPSAGGICT-GLGI-----APRVVGD------------LIGVVKA- 281
++ A + T GL I P D LIGV++
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLA 247
Query: 282 --YTTRVGSGPFPTEILGQGGDHLRLAGQEFGTTTGRPRRCGWLDIVALKYCCQINGFSS 339
T G P E+ +L+ G T +V + + + S
Sbjct: 248 HYVVTAKLLGFTPGELR----SYLK------GATG-----HS-QGLVTAVAIAETDSWES 291
Query: 340 LNLTKLDVLSELPEIQLGVAYKRVDGTPIKSFPADLV--------------L----LEQL 381
++ ++ L +GV P S P ++ L L Q
Sbjct: 292 FFVSVRKAITVL--FFIGVRCYEA--YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE 347
Query: 382 KVEYEV------LPGWQSDIS-SIRNYSDLPKAARQFVERI----EELVGVPINY--IGV 428
+V+ V LP + S+ N A+ V + + L G+ +
Sbjct: 348 QVQDYVNKTNSHLPA-GKQVEISLVN------GAKNLV--VSGPPQSLYGLNLTLRKAKA 398
Query: 429 GPGRD 433
G D
Sbjct: 399 PSGLD 403
Score = 43.5 bits (102), Expect = 1e-04
Identities = 68/349 (19%), Positives = 102/349 (29%), Gaps = 140/349 (40%)
Query: 1 VTANE---SPNRIELLSQVSGVLGCQ--------------WGD--EGKGKLVDILAEHFD 41
VTA +P EL S + G G W K + +L F
Sbjct: 251 VTAKLLGFTPG--ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL---FF 305
Query: 42 IVARCQGGANAGHT----------IYNAEGKKFALHLVPS------GILNEDTVCVIG-- 83
I RC +T + N EG VPS + E +
Sbjct: 306 IGVRCYEA--YPNTSLPPSILEDSLENNEG-------VPSPMLSISNLTQEQVQDYVNKT 356
Query: 84 NGVVVHLP-------GLFNEIDDLEANGVSCKGR--ILVSDRAHLLFDFHQEVDGLREAE 134
N HLP L N G ++VS L+ + LR+
Sbjct: 357 NS---HLPAGKQVEISLVN-------------GAKNLVVSGPPQSLYGLNLT---LRK-- 395
Query: 135 LVKSFIGTTRRGIGPAYSSKVIRSGIRVSDLRHMDTF-----PQKLDF---LLSNAAARF 186
K+ G + I P +S + ++ R F P F LL A+
Sbjct: 396 -AKAPSGLDQSRI-P-FSERKLKFSNR---------FLPVASP----FHSHLLVPASDLI 439
Query: 187 P------GFKYTPHMLREEV----------EKYKRIAERL-EPFVVDTVHFINESIAQKR 229
+ ++ V I+ER+ + + V + E+ Q +
Sbjct: 440 NKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW--ETTTQFK 497
Query: 230 KILVEGGQATMLDIDFGTYPFVTSS-SPSAGGICTGLGIAPRVV--GDL 275
AT + +DFG P S G G+ RV+ G L
Sbjct: 498 --------ATHI-LDFG--PGGASGLGVLTHRNKDGTGV--RVIVAGTL 533
Score = 42.3 bits (99), Expect = 3e-04
Identities = 58/345 (16%), Positives = 98/345 (28%), Gaps = 110/345 (31%)
Query: 47 QGGANAG-------HTIYNAEGKKF----ALHLVPSGILNEDTVCVIGNGVVVH--L--P 91
QG + + Y+ A L D V G+ + L P
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 92 GLFNEIDDLEANGVSCKGRILVSDRAHLLFDFHQEVDGLREAELVKSFIGTTRRGIG--- 148
+ D L + +SC I V AH + + G EL G T G
Sbjct: 223 SNTPDKDYLLSIPISCPL-IGVIQLAHYVVTAK--LLGFTPGELRSYLKGATGHSQGLVT 279
Query: 149 ---PAYSS----------KVIR----SGIRVSDLRHMDTFPQKLDFLLSNAAARFPGFKY 191
A + K I G+R + + +P S +
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIGVRC----Y-EAYPN-TSLPPSILEDSLENNEG 333
Query: 192 TP-HML------REEVEKYKRIAERLEPFVVDTVHFINESIAQKRKI---LVEGGQATML 241
P ML +E+V+ Y V+ N + +++ LV G +
Sbjct: 334 VPSPMLSISNLTQEQVQDY-----------VNKT---NSHLPAGKQVEISLVNGAKN--- 376
Query: 242 DIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKA---YTTR----------VGS 288
V S P + GL + R G+ ++ ++ R V S
Sbjct: 377 --------LVVSGPPQS---LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS 425
Query: 289 GPFPTEILGQ---------GGDHLRLAGQE-----FGTTTGRPRR 319
PF + +L +++ ++ + T G R
Sbjct: 426 -PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLR 469
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.28
Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 14/73 (19%)
Query: 377 LLEQLKVEYEVLPGWQSDISSIRN--YSDLPKAARQFVERIEELVGV--------PINYI 426
L+ +K E R+ Y+D A+ V R++ + + P +
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 427 GV----GPGRDAL 435
+ G G+ +
Sbjct: 154 LIDGVLGSGKTWV 166
Score = 29.8 bits (66), Expect = 2.5
Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 16/101 (15%)
Query: 322 WLDIVALKYCCQINGFSSLNLTKLDVLSELPEIQLGVAY---K-RVDGTPIKSFPADLVL 377
+LD +Y G N+ + ++ + L + K R D T + + L
Sbjct: 468 YLD----QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523
Query: 378 LEQLKVEYEVLPGWQSDIS-SIRNYSDLPKAARQFVERIEE 417
L+QLK Y+ I + Y L A F+ +IEE
Sbjct: 524 LQQLKF-YK------PYICDNDPKYERLVNAILDFLPKIEE 557
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors,
macrocycle; HET: MAN PP7; 0.95A {Penicillium
janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E*
1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A*
2web_A* 2wec_A* 2wed_A* 3app_A
Length = 323
Score = 29.5 bits (67), Expect = 1.9
Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 20/70 (28%)
Query: 46 CQGGANAGHTIYNA-------EGKKFALH----LVPSGILNEDTVCVIGN--------GV 86
+GH++YN G +++ SG + D+V +G
Sbjct: 46 LPASQQSGHSVYNPSATGKELSGYTWSISYGDGSSASGNVFTDSVT-VGGVTAHGQAVQA 104
Query: 87 VVHLPGLFNE 96
+ F +
Sbjct: 105 AQQISAQFQQ 114
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 2.2
Identities = 5/29 (17%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 199 EVEKYKRIAERLEPFVVDTVH--FINESI 225
E + K++ L+ + D+ I ++
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATM 46
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A
{Aspergillus phoenicis} SCOP: b.50.1.2
Length = 325
Score = 29.2 bits (66), Expect = 2.9
Identities = 11/68 (16%), Positives = 17/68 (25%), Gaps = 20/68 (29%)
Query: 46 CQGGANAGHTIYNAE-------GKKFALH----LVPSGILNEDTVCVIGN--------GV 86
GH +Y G + + SG + DTV +G
Sbjct: 45 LPSSEQTGHDLYTPSSSATKLSGYSWDISYGDGSSASGDVYRDTVT-VGGVTTNKQAVEA 103
Query: 87 VVHLPGLF 94
+ F
Sbjct: 104 ASKISSEF 111
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET:
MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB:
1ize_A*
Length = 323
Score = 28.7 bits (65), Expect = 3.6
Identities = 10/70 (14%), Positives = 20/70 (28%), Gaps = 20/70 (28%)
Query: 46 CQGGANAGHTIYN-------AEGKKFALH----LVPSGILNEDTVCVIGN--------GV 86
+GH Y +G +++ SG + +D V +G
Sbjct: 46 TPSSERSGHDYYTPGSSAQKIDGATWSISYGDGSSASGDVYKDKVT-VGGVSYDSQAVES 104
Query: 87 VVHLPGLFNE 96
+ F +
Sbjct: 105 AEKVSSEFTQ 114
>3pl5_A SMU_165, putative uncharacterized protein; fatty acid binding
protein, lipid binding protein; HET: PLM; 2.04A
{Streptococcus mutans}
Length = 320
Score = 28.4 bits (64), Expect = 4.5
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 9/46 (19%)
Query: 401 YSDLPKAARQFVERIEELVG---VPINYIG------VGPGRDALIF 437
Y++ +AA E++ V +G VGP A+
Sbjct: 269 YANDSEAAENLKEQLLANEKIKNVVTLPLGPVISTHVGPNTLAVFT 314
>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A
{Homo sapiens}
Length = 149
Score = 27.5 bits (62), Expect = 4.7
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 11/59 (18%)
Query: 181 NAAARFPGFKYTPHMLREEVEKYKRI------AERLEPFVVDTVHFINESIAQKRKILV 233
N P + Y + YKR+ + L + + FI E+ + +L+
Sbjct: 35 NVTTHLPLYHYEKGLF-----NYKRLPATDSNKQNLRQYFEEAFEFIEEAHQCGKGLLI 88
>2oud_A Dual specificity protein phosphatase 10; A central five-stranded
B-sheet, hydrolase; 2.80A {Homo sapiens}
Length = 177
Score = 27.6 bits (62), Expect = 5.0
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 11/59 (18%)
Query: 181 NAAARFPGFKYTPHMLREEVEKYKRI------AERLEPFVVDTVHFINESIAQKRKILV 233
N P + Y + YKR+ + L + + FI E+ + +L+
Sbjct: 39 NVTTHLPLYHYEKGLF-----NYKRLPATDSNKQNLRQYFEEAFEFIEEAHQCGKGLLI 92
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP-
binding, DNA-binding; 2.50A {Geobacillus
stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB:
1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C*
2pjr_B*
Length = 724
Score = 28.7 bits (65), Expect = 5.1
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 406 KAARQFVERIEELVGVPINYIGVG 429
KAAR+ ER++ L+G + +
Sbjct: 67 KAAREMRERVQSLLGGAAEDVWIS 90
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl
protease, hydrolase; 1.70A {Trichoderma reesei} PDB:
3c9y_A* 3emy_A*
Length = 329
Score = 28.4 bits (64), Expect = 5.1
Identities = 12/70 (17%), Positives = 18/70 (25%), Gaps = 22/70 (31%)
Query: 46 CQGGANAGHTIYNAE---------GKKFALH----LVPSGILNEDTVCVIGN-------- 84
+ GH IY G +++ SG + D V IG
Sbjct: 48 TPKSSATGHAIYTPSKSSTSKKVSGASWSISYGDGSSSSGDVYTDKVT-IGGFSVNTQGV 106
Query: 85 GVVVHLPGLF 94
+ F
Sbjct: 107 ESATRVSTEF 116
>1z6b_A Pffabz, fatty acid synthesis protein; malaria,
beta-hydroxyacyl-ACP dehydra fatty acid biosynthesis,
SAD phasing, lyase; 2.09A {Plasmodium falciparum} SCOP:
d.38.1.6 PDB: 3az8_A* 3az9_A* 3aza_A* 3azb_A* 1zhg_A
2oki_A 2okh_A
Length = 154
Score = 27.5 bits (62), Expect = 5.5
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 14/47 (29%)
Query: 1 VTANES------PNR--------IELLSQVSGVLGCQWGDEGKGKLV 33
V+ NE P + IE L+Q++G+L + D K L
Sbjct: 47 VSTNEPFFNGHFPQKQIMPGVLQIEALAQLAGILCLKSDDSQKNNLF 93
>3emu_A Leucine rich repeat and phosphatase domain containing protein;
structural genomics, hydrolase, PSI-2, protein structure
initiative; 2.30A {Entamoeba histolytica}
Length = 161
Score = 27.6 bits (62), Expect = 6.1
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 6/38 (15%)
Query: 202 KYKRI------AERLEPFVVDTVHFINESIAQKRKILV 233
R+ +L + + + FI SI +K +L+
Sbjct: 55 DILRLDIVSEEGHQLYDSIPNAIKFIIRSIQRKEGVLI 92
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP
replication, DNA-binding, hydrolase, nucleotide-B SOS
response; HET: DNA; 1.80A {Escherichia coli} PDB:
2is6_A* 2is2_A* 2is1_A* 2is4_A*
Length = 647
Score = 28.2 bits (64), Expect = 6.8
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 406 KAARQFVERIEELVGVPINYIGVG 429
KAA + RI +L+G + VG
Sbjct: 65 KAAAEMRHRIGQLMGTSQGGMWVG 88
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like
domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus}
PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Length = 600
Score = 28.2 bits (64), Expect = 7.0
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 383 VEYEVLPGWQSDISSIRNYSDLPKAARQFVERIEE-----LVGVPINYIG 427
V Y V + ++ +RN D P A +E +EE + P Y+G
Sbjct: 372 VIYRVKKKFTDEVIEVRNPMDFPDNA-GLIEYVEEPFVLVTIITPKEYVG 420
>3cm3_A Late protein H1, dual specificity protein phosphatase;
dual-specificity phosphatase, VH1, hydrolase; 1.32A
{Vaccinia virus} PDB: 2rf6_A 2p4d_A
Length = 176
Score = 27.3 bits (61), Expect = 7.3
Identities = 5/38 (13%), Positives = 12/38 (31%), Gaps = 6/38 (15%)
Query: 202 KYKRI------AERLEPFVVDTVHFINESIAQKRKILV 233
I + + D F+++ + +LV
Sbjct: 76 NIIHIPLVDDTTTDISKYFDDVTAFLSKCDQRNEPVLV 113
>1pzx_A Hypothetical protein APC36103; structural genomics, two domains
containing mixed alpha/beta structures, PSI; HET: PLM;
2.00A {Geobacillus stearothermophilus} SCOP: c.119.1.1
Length = 289
Score = 27.5 bits (62), Expect = 7.4
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 9/46 (19%)
Query: 401 YSDLPKAARQFVERIEELVG---VPINYIG------VGPGRDALIF 437
++D + A + + IEE G ++ IG GPG AL F
Sbjct: 237 HADDEETALELKQMIEETHGCTRFFLSDIGSAIGAHAGPGTIALFF 282
>2g7z_A Conserved hypothetical protein SPY1493; long-fatty acid binding
protein, lipid binding protein, PSI, structural
genomics; HET: MSE HXA; 2.05A {Streptococcus pyogenes}
Length = 282
Score = 27.5 bits (62), Expect = 8.4
Identities = 10/45 (22%), Positives = 13/45 (28%), Gaps = 8/45 (17%)
Query: 401 YSDLPKAARQFVERIEELVGVPI--NYIG------VGPGRDALIF 437
Y+ A ERI I G G G A++
Sbjct: 235 YAGEASLALTLKERIAAYYNHSISVLETGSIIQTHTGEGAFAVMV 279
>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol
phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus
musculus} PDB: 3rgq_A*
Length = 157
Score = 27.0 bits (60), Expect = 8.8
Identities = 5/38 (13%), Positives = 11/38 (28%), Gaps = 6/38 (15%)
Query: 202 KYKRI------AERLEPFVVDTVHFINESIAQKRKILV 233
+ R+ + V F + A + + V
Sbjct: 57 EQLRLSTVDMTGVPTLANLHKGVQFALKYQALGQCVYV 94
>3fys_A Protein DEGV; fatty acid-binding, EDD fold, fatty acid-binding
protein; HET: PLM; 2.50A {Bacillus subtilis}
Length = 315
Score = 27.2 bits (61), Expect = 9.7
Identities = 6/46 (13%), Positives = 17/46 (36%), Gaps = 9/46 (19%)
Query: 401 YSDLPKAARQFVERIEELVG---VPINYIG------VGPGRDALIF 437
+++ + A + +E + +Y G +G G + +
Sbjct: 267 HANREEEAAKIIEELSAKYPHVEFYNSYFGAVIGTHLGEGALGICW 312
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.141 0.420
Gapped
Lambda K H
0.267 0.0753 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,135,723
Number of extensions: 468265
Number of successful extensions: 1223
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1193
Number of HSP's successfully gapped: 46
Length of query: 438
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 342
Effective length of database: 4,021,377
Effective search space: 1375310934
Effective search space used: 1375310934
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)