RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 045536
(438 letters)
>d1dj2a_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Mouse-ear
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 429
Score = 464 bits (1195), Expect = e-163
Identities = 379/429 (88%), Positives = 405/429 (94%)
Query: 10 IELLSQVSGVLGCQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLV 69
I LSQVSGVLGCQWGDEGKGKLVDILA+HFDIVARCQGGANAGHTIYN+EGKKFALHLV
Sbjct: 1 IGSLSQVSGVLGCQWGDEGKGKLVDILAQHFDIVARCQGGANAGHTIYNSEGKKFALHLV 60
Query: 70 PSGILNEDTVCVIGNGVVVHLPGLFNEIDDLEANGVSCKGRILVSDRAHLLFDFHQEVDG 129
PSGILNEDT CVIGNGVVVHLPGLF EID LE+NGVSCKGRILVSDRAHLLFDFHQEVDG
Sbjct: 61 PSGILNEDTTCVIGNGVVVHLPGLFKEIDGLESNGVSCKGRILVSDRAHLLFDFHQEVDG 120
Query: 130 LREAELVKSFIGTTRRGIGPAYSSKVIRSGIRVSDLRHMDTFPQKLDFLLSNAAARFPGF 189
LRE+EL KSFIGTT+RGIGPAYSSKVIR+GIRV DLRHMDT PQKLD LLS+AAARF GF
Sbjct: 121 LRESELAKSFIGTTKRGIGPAYSSKVIRNGIRVGDLRHMDTLPQKLDLLLSDAAARFQGF 180
Query: 190 KYTPHMLREEVEKYKRIAERLEPFVVDTVHFINESIAQKRKILVEGGQATMLDIDFGTYP 249
KYTP MLREEVE YKR A+RLEP++ DTVHFIN+SI+QK+K+LVEGGQATMLDIDFGTYP
Sbjct: 181 KYTPEMLREEVEAYKRYADRLEPYITDTVHFINDSISQKKKVLVEGGQATMLDIDFGTYP 240
Query: 250 FVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEILGQGGDHLRLAGQE 309
FVTSSSPSAGGICTGLGIAP VVGDLIGVVKAYTTRVGSGPFPTE LG GGD LRLAGQE
Sbjct: 241 FVTSSSPSAGGICTGLGIAPSVVGDLIGVVKAYTTRVGSGPFPTENLGTGGDLLRLAGQE 300
Query: 310 FGTTTGRPRRCGWLDIVALKYCCQINGFSSLNLTKLDVLSELPEIQLGVAYKRVDGTPIK 369
FGTTTGRPRRCGWLDIVALK+ CQINGF+SLNLTKLDVLS+L EIQLGVAYKR DGTP+K
Sbjct: 301 FGTTTGRPRRCGWLDIVALKFSCQINGFASLNLTKLDVLSDLNEIQLGVAYKRSDGTPVK 360
Query: 370 SFPADLVLLEQLKVEYEVLPGWQSDISSIRNYSDLPKAARQFVERIEELVGVPINYIGVG 429
SFP DL LLE+L VEYEVLPGW+SDISS+RNYSDLPKAA+Q+VERIEELVGVPI+YIG+G
Sbjct: 361 SFPGDLRLLEELHVEYEVLPGWKSDISSVRNYSDLPKAAQQYVERIEELVGVPIHYIGIG 420
Query: 430 PGRDALIFK 438
PGRDALI+K
Sbjct: 421 PGRDALIYK 429
>d1qf5a_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA
{Escherichia coli [TaxId: 562]}
Length = 431
Score = 446 bits (1147), Expect = e-156
Identities = 185/420 (44%), Positives = 259/420 (61%), Gaps = 2/420 (0%)
Query: 19 VLGCQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDT 78
VLG QWGDEGKGK+VD+L E V R QGG NAGHT+ G+K LHL+PSGIL E+
Sbjct: 6 VLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVI-NGEKTVLHLIPSGILRENV 64
Query: 79 VCVIGNGVVVHLPGLFNEIDDLEANGVSCKGRILVSDRAHLLFDFHQEVDGLREAELVKS 138
+IGNGVV+ L E+ +LE G+ + R+L+S+ L+ D+H +D RE
Sbjct: 65 TSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKARGAK 124
Query: 139 FIGTTRRGIGPAYSSKVIRSGIRVSDLRHMDTFPQKLDFLLSNAAARFPGFKYTPHMLRE 198
IGTT RGIGPAY KV R G+RV DL +TF +KL ++ + + + +
Sbjct: 125 AIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAEKLKEVMEYHNFQLVNYYKAEAVDYQ 184
Query: 199 EV-EKYKRIAERLEPFVVDTVHFINESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSPS 257
+V + +A+ L VVD ++++ + ++ EG Q T+LDID GTYP+VTSS+ +
Sbjct: 185 KVLDDTMAVADILTSMVVDVSDLLDQARQRGDFVMFEGAQGTLLDIDHGTYPYVTSSNTT 244
Query: 258 AGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEILGQGGDHLRLAGQEFGTTTGRP 317
AGG+ TG G+ PR V ++G++KAY+TRVG+GPFPTE+ + G+ L G EFG TTGR
Sbjct: 245 AGGVATGSGLGPRYVDYVLGILKAYSTRVGAGPFPTELFDETGEFLCKQGNEFGATTGRR 304
Query: 318 RRCGWLDIVALKYCCQINGFSSLNLTKLDVLSELPEIQLGVAYKRVDGTPIKSFPADLVL 377
RR GWLD VA++ Q+N S LTKLDVL L E++L VAY+ DG + + P
Sbjct: 305 RRTGWLDTVAVRRAVQLNSLSGFCLTKLDVLDGLKEVKLCVAYRMPDGREVTTTPLAADD 364
Query: 378 LEQLKVEYEVLPGWQSDISSIRNYSDLPKAARQFVERIEELVGVPINYIGVGPGRDALIF 437
+ ++ YE +PGW +++ S LP+AA +++RIEEL GVPI+ I GP R +
Sbjct: 365 WKGVEPIYETMPGWSESTFGVKDRSGLPQAALNYIKRIEELTGVPIDIISTGPDRTETMI 424
>d1p9ba_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Malaria
parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 424
Score = 421 bits (1082), Expect = e-146
Identities = 182/425 (42%), Positives = 265/425 (62%), Gaps = 12/425 (2%)
Query: 19 VLGCQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDT 78
+LG QWGDEGKGK++D+L+E+ DI R GGANAGHTI KK+ALHL+P G+L ++
Sbjct: 6 ILGAQWGDEGKGKIIDMLSEYSDITCRFNGGANAGHTISV-NDKKYALHLLPCGVLYDNN 64
Query: 79 VCVIGNGVVVHLPGLFNEIDDLEANGVSCKGRILVSDRAHLLFDFHQEVDGLREAELV-- 136
+ V+GNG+V+H+ L EI+ + R+ +S++AH+LFD HQ +D ++E + +
Sbjct: 65 ISVLGNGMVIHVKSLMEEIESVGGK---LLDRLYLSNKAHILFDIHQIIDSIQETKKLKE 121
Query: 137 KSFIGTTRRGIGPAYSSKVIRSGIRVSDLRHMDTFPQKLDFLLSNAAARFPGFKYTPHML 196
IGTT+RGIGP YS+K R GIR+ L++ + F L+ + + T +
Sbjct: 122 GKQIGTTKRGIGPCYSTKASRIGIRLGTLKNFENFKNMYSKLIDH---LMDLYNITEYDK 178
Query: 197 REEVEKYKRIAERLEPFVVDTVHFINESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSP 256
+E+ + +L +VD + F+N ++ +K+L+EG A MLDIDFGTYP+VTSS
Sbjct: 179 EKELNLFYNYHIKLRDRIVDVISFMNTNLENNKKVLIEGANAAMLDIDFGTYPYVTSSCT 238
Query: 257 SAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEILGQGGDHLRLAGQEFGTTTGR 316
+ GG+ +GLGI + + ++GVVK+Y TRVG GPF TE+ G +LR G E+GTTT R
Sbjct: 239 TVGGVFSGLGIHHKKLNLVVGVVKSYLTRVGCGPFLTELNNDVGQYLREKGHEYGTTTKR 298
Query: 317 PRRCGWLDIVALKYCCQINGFSSLNLTKLDVLSELPEIQLGVAY---KRVDGTPIKSFPA 373
PRRCGWLDI L Y IN +NLTKLDVLS L EI L V + K + +P
Sbjct: 299 PRRCGWLDIPMLLYVKCINSIDMINLTKLDVLSGLEEILLCVNFKNKKTGELLEKGCYPV 358
Query: 374 DLVLLEQLKVEYEVLPGWQSDISSIRNYSDLPKAARQFVERIEELVGVPINYIGVGPGRD 433
+ + E+ + YE GW+ DIS+ + +LP+ A++++ IE+ + PI +IGVGP R
Sbjct: 359 EEEISEEYEPVYEKFSGWKEDISTCNEFDELPENAKKYILAIEKYLKTPIVWIGVGPNRK 418
Query: 434 ALIFK 438
+I K
Sbjct: 419 NMIVK 423
>d1iwea_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 430
Score = 420 bits (1081), Expect = e-146
Identities = 212/428 (49%), Positives = 294/428 (68%), Gaps = 9/428 (2%)
Query: 14 SQVSGVLGCQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGI 73
S+V+ VLG QWGDEGKGK+VD+LA DIV+RCQGG NAGHT+ +GK++ HL+PSGI
Sbjct: 4 SRVTVVLGAQWGDEGKGKVVDLLATDADIVSRCQGGNNAGHTVVV-DGKEYDFHLLPSGI 62
Query: 74 LNEDTVCVIGNGVVVHLPGLFNEIDDLEANGVSC-KGRILVSDRAHLLFDFHQEVDGLRE 132
+N V IGNGVV+HLPGLF E + E G+ + R+++SDRAHL+FDFHQ VDGL+E
Sbjct: 63 INTKAVSFIGNGVVIHLPGLFEEAEKNEKKGLKDWEKRLIISDRAHLVFDFHQAVDGLQE 122
Query: 133 AELVKSF---IGTTRRGIGPAYSSKVIRSGIRVSDLRHMDTFPQKLDFLLSNAAARFPGF 189
+ IGTT++GIGP YSSK R+G+R+ DL L++
Sbjct: 123 VQRQAQEGKNIGTTKKGIGPTYSSKAARTGLRICDLLSDFDEFSARFKNLAHQHQSMFPT 182
Query: 190 KYTPHMLREEVEKYKRIAERLEPFVVDTVHFINESIAQKRK-ILVEGGQATMLDIDFGTY 248
++++ K AER+ P V D V+F+ E++ K +LVEG A +LDIDFGTY
Sbjct: 183 LEIDVE--GQLKRLKGFAERIRPMVRDGVYFMYEALHGPPKKVLVEGANAALLDIDFGTY 240
Query: 249 PFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEILGQGGDHLRLAGQ 308
PFVTSS+ + GG+CTGLGI P+ +GD+ GVVKAYTTRVG G FPTE + + GD L+ G
Sbjct: 241 PFVTSSNCTVGGVCTGLGIPPQNIGDVYGVVKAYTTRVGIGAFPTEQINEIGDLLQNRGH 300
Query: 309 EFGTTTGRPRRCGWLDIVALKYCCQINGFSSLNLTKLDVLSELPEIQLGVAYKRVDGTPI 368
E+G TTGR RRCGWLD++ L+Y +NGF++L LTKLD+L L EI++G++YK ++G I
Sbjct: 301 EWGVTTGRKRRCGWLDLMILRYAHMVNGFTALALTKLDILDVLSEIKVGISYK-LNGKRI 359
Query: 369 KSFPADLVLLEQLKVEYEVLPGWQSDISSIRNYSDLPKAARQFVERIEELVGVPINYIGV 428
FPA+ +L++++VEYE LPGW++D + R + DLP A+ +V +E +GV + ++GV
Sbjct: 360 PYFPANQEILQKVEVEYETLPGWKADTTGARKWEDLPPQAQSYVRFVENHMGVAVKWVGV 419
Query: 429 GPGRDALI 436
G R+++I
Sbjct: 420 GKSRESMI 427
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 33.3 bits (74), Expect = 0.047
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 335 NGFSSL-----NLTKLDV----LSELPEIQLGVAYKRVDGTPIKSFPADLVLLEQLKV 383
N L L +L L+E+PE+ + V+ P++ FP +E L++
Sbjct: 294 NKLIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRM 351
>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon
(Pyrococcus furiosus) [TaxId: 2261]}
Length = 206
Score = 28.3 bits (62), Expect = 1.5
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 395 ISSIRNYSDLPKAARQFVERIEELVG 420
IS++ D+ KA + + +EE++G
Sbjct: 181 ISAVMGAEDVRKATEELRKIVEEVLG 206
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 27.7 bits (60), Expect = 2.2
Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 18/80 (22%)
Query: 327 ALKYCCQINGFSSLNLTKLDVLSELPEIQLGVAYKRVDGTPIKSFPADLVLLEQLKVEYE 386
A++ + + K+++ +P PI+ A L L+ +
Sbjct: 10 AIRIFEERKSVVATEAEKVELHGMIP--------------PIEKMDATLSTLKAC----K 51
Query: 387 VLPGWQSDISSIRNYSDLPK 406
L ++I I + S +
Sbjct: 52 HLALSTNNIEKISSLSGMEN 71
>d2a4ha1 c.47.1.23 (A:62-178) Selenoprotein sep15 {Drosophila
melanogaster [TaxId: 7227]}
Length = 117
Score = 25.9 bits (57), Expect = 4.2
Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 11/85 (12%)
Query: 152 SSKVIRSGIRVSDLRHMDTFPQKLDFLLSNAAARFPG--FKYTP------HMLREEVEKY 203
+ + I +PQ F+ S A+FP KY +L +
Sbjct: 7 AQRTYAKAILEVCTCKFRAYPQIQAFIQSGRPAKFPNLQIKYVRGLDPVVKLLDASGKVQ 66
Query: 204 KRIAERLEPFVVDTVH-FINESIAQ 227
+ + + + DTV F +A+
Sbjct: 67 ETL--SITKWNTDTVEEFFETHLAK 89
>d1qzua_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decarboxylase
(PPC decarboxylase, halotolerance protein Hal3a) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 181
Score = 25.8 bits (56), Expect = 9.7
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 6/38 (15%)
Query: 10 IELLSQVSGVLGCQWGDEGKGKLVDILAEHFDIVARCQ 47
+ V+ L C GDEG G +AE IV + +
Sbjct: 148 YVEIPCVAKKLVC--GDEGLGA----MAEVGTIVDKVK 179
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.141 0.420
Gapped
Lambda K H
0.267 0.0628 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,708,327
Number of extensions: 84748
Number of successful extensions: 268
Number of sequences better than 10.0: 1
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 10
Length of query: 438
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 350
Effective length of database: 1,199,356
Effective search space: 419774600
Effective search space used: 419774600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)