Your job contains 1 sequence.
>045537
MQSLAAAVRPRFVQFLNRPSLKPLSLRAFSSSSSDYANQSRGGIPRFFSQGGIVRVEGDE
FWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFA
AFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFV
YGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPE
GDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSDSQQMPIP
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 045537
(291 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2031025 - symbol:AT1G50000 species:3702 "Arabi... 784 6.2e-78 1
UNIPROTKB|Q4K4H0 - symbol:PFL_5805 "Ribosomal RNA small s... 169 1.1e-11 1
UNIPROTKB|Q5LMD5 - symbol:SPO3629 "Ribosomal RNA small su... 164 1.4e-10 1
TIGR_CMR|SPO_3629 - symbol:SPO_3629 "conserved hypothetic... 164 1.4e-10 1
UNIPROTKB|Q3AF05 - symbol:CHY_0418 "Ribosomal RNA small s... 163 1.8e-10 1
TIGR_CMR|CHY_0418 - symbol:CHY_0418 "conserved hypothetic... 163 1.8e-10 1
UNIPROTKB|Q486L8 - symbol:CPS_1254 "Ribosomal RNA small s... 161 2.7e-10 1
TIGR_CMR|CPS_1254 - symbol:CPS_1254 "conserved hypothetic... 161 2.7e-10 1
UNIPROTKB|Q74G06 - symbol:rsmE "Ribosomal RNA small subun... 115 2.5e-09 2
TIGR_CMR|GSU_0446 - symbol:GSU_0446 "conserved hypothetic... 115 2.5e-09 2
UNIPROTKB|Q0C2F7 - symbol:HNE_1369 "Ribosomal RNA small s... 120 7.6e-09 2
UNIPROTKB|Q71ZK0 - symbol:LMOf2365_1489 "Ribosomal RNA sm... 101 1.8e-08 2
UNIPROTKB|Q83AE1 - symbol:CBU_1960 "Ribosomal RNA small s... 143 8.4e-08 1
TIGR_CMR|CBU_1960 - symbol:CBU_1960 "conserved hypothetic... 143 8.4e-08 1
UNIPROTKB|Q60CQ8 - symbol:MCA0018 "Ribosomal RNA small su... 135 6.1e-07 1
DICTYBASE|DDB_G0282549 - symbol:DDB_G0282549 species:4468... 106 6.0e-06 2
UNIPROTKB|Q97P63 - symbol:SP_1781 "Ribosomal RNA small su... 87 4.1e-05 2
UNIPROTKB|Q81LS5 - symbol:BAS4210 "Ribosomal RNA small su... 84 7.5e-05 2
TIGR_CMR|BA_4536 - symbol:BA_4536 "conserved hypothetical... 84 7.5e-05 2
UNIPROTKB|Q8EIK7 - symbol:rsmE "Ribosomal RNA small subun... 114 0.00020 1
TIGR_CMR|SO_0832 - symbol:SO_0832 "conserved hypothetical... 114 0.00020 1
UNIPROTKB|Q9KUP6 - symbol:VC_0469 "Ribosomal RNA small su... 111 0.00044 1
TIGR_CMR|VC_0469 - symbol:VC_0469 "conserved hypothetical... 111 0.00044 1
>TAIR|locus:2031025 [details] [associations]
symbol:AT1G50000 species:3702 "Arabidopsis thaliana"
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0008168
"methyltransferase activity" evidence=IEA] [GO:0009507
"chloroplast" evidence=ISM] [GO:0006744 "ubiquinone biosynthetic
process" evidence=RCA] InterPro:IPR006700 Pfam:PF04452
EMBL:CP002684 GO:GO:0008168 InterPro:IPR015947 SUPFAM:SSF88697
GO:GO:0006364 UniGene:At.49963 UniGene:At.50946 KO:K09761
TIGRFAMs:TIGR00046 EMBL:AY600526 EMBL:AY773824 IPI:IPI00533365
RefSeq:NP_175422.2 ProteinModelPortal:Q6E297 SMR:Q6E297
STRING:Q6E297 PRIDE:Q6E297 EnsemblPlants:AT1G50000.1 GeneID:841424
KEGG:ath:AT1G50000 TAIR:At1g50000 HOGENOM:HOG000142264
InParanoid:Q6E297 OMA:APTKNID PhylomeDB:Q6E297
ProtClustDB:CLSN2681526 Genevestigator:Q6E297 Uniprot:Q6E297
Length = 296
Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
Identities = 172/302 (56%), Positives = 204/302 (67%)
Query: 1 MQSLAAAVRPRFVQF--LNRPSLKPLSLRAFXXXXX------DYANQSRGGIPRFFS--- 49
M++LAAA RP F L R L S ++F + NQSRGG+PRFFS
Sbjct: 2 MRALAAASRPLFSDLPSLVRSWLPTSSFKSFATVSSSPPSDLNLRNQSRGGLPRFFSDDL 61
Query: 50 ---QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDL 106
+GG+VRV+G EFWHM KVLRL DRVELFNGKGGL+EGCIQ ID+TG+D +A ED
Sbjct: 62 PSRKGGVVRVQGSEFWHMAKVLRLKQEDRVELFNGKGGLVEGCIQSIDKTGVDFIAQEDQ 121
Query: 107 KLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLS 166
K++LPQ QW VFAAFGTLKGGRADWL+EKCTELGA SVTPLLTE +S I +N
Sbjct: 122 KVILPQGMQWQVFAAFGTLKGGRADWLIEKCTELGASSVTPLLTE---RSPIISENRVDR 178
Query: 167 CNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSS 226
F A QRLH+MVLNPP+K LL + +SKL VA AEA PL+ A++S
Sbjct: 179 LE-RVSFAAAKQC----QRLHQMVLNPPIKFGTLLDHILKSKLCLVATAEAKPLLNAVNS 233
Query: 227 SRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVEXXXXXXXXXXMLCSDSQ 286
S ESSGL+IVGPEGDFT+KEV ++EAG TAVGLGPHRLRVE ++ SDSQ
Sbjct: 234 SAKESSGLLIVGPEGDFTKKEVEMMLEAGGTAVGLGPHRLRVETATIALLATLVMWSDSQ 293
Query: 287 QM 288
+M
Sbjct: 294 EM 295
>UNIPROTKB|Q4K4H0 [details] [associations]
symbol:PFL_5805 "Ribosomal RNA small subunit
methyltransferase E" species:220664 "Pseudomonas protegens Pf-5"
[GO:0016436 "rRNA (uridine) methyltransferase activity"
evidence=ISS] [GO:0031167 "rRNA methylation" evidence=ISS]
InterPro:IPR006700 Pfam:PF04452 PIRSF:PIRSF015601 GO:GO:0005737
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR015947
SUPFAM:SSF88697 GO:GO:0016436 eggNOG:COG1385 HOGENOM:HOG000015265
KO:K09761 ProtClustDB:PRK11713 TIGRFAMs:TIGR00046
RefSeq:YP_262863.1 ProteinModelPortal:Q4K4H0 STRING:Q4K4H0
GeneID:3480177 KEGG:pfl:PFL_5805 PATRIC:19881117 OMA:GERMEFT
BioCyc:PFLU220664:GIX8-5845-MONOMER Uniprot:Q4K4H0
Length = 239
Score = 169 (64.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 55/210 (26%), Positives = 94/210 (44%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +VLR++ +++F+G G G + + + + V E Q + +
Sbjct: 26 YIGRVLRMAEGAALQVFDGSGTEFRGALVEVGKKRVRVQLNESF--AGQQESPLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G +G R DW ++K TELG +TP+ +E + L+ + D L ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVSEITPIFSERCEVRLKDER-ADKRLL----HWRQVAISAC 138
Query: 180 VYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGP 239
G R V++PP+ L + Q++ + P+ L S +S ++GP
Sbjct: 139 EQCG-RSQVPVIHPPVL---LADWIKQARADLKLVLH--PVAQPLESHAKPASLAFLIGP 192
Query: 240 EGDFTEKEVNKIVEAGATAVGLGPHRLRVE 269
EG T+ EV AG LGP LR E
Sbjct: 193 EGGLTDAEVELSHSAGFLPARLGPRVLRTE 222
>UNIPROTKB|Q5LMD5 [details] [associations]
symbol:SPO3629 "Ribosomal RNA small subunit
methyltransferase E" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006700 Pfam:PF04452 PIRSF:PIRSF015601
GO:GO:0005737 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0008168
InterPro:IPR015947 SUPFAM:SSF88697 GO:GO:0006364 KO:K09761
ProtClustDB:PRK11713 TIGRFAMs:TIGR00046 HOGENOM:HOG000015266
OMA:PWLLFAP RefSeq:YP_168823.1 ProteinModelPortal:Q5LMD5
GeneID:3195522 KEGG:sil:SPO3629 PATRIC:23380737 Uniprot:Q5LMD5
Length = 251
Score = 164 (62.8 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 65/239 (27%), Positives = 109/239 (45%)
Query: 44 IPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVA- 102
+ + QG V+V D+ ++ V+RL D V LFNG+ G + + + G +++
Sbjct: 9 VEQALGQGQPVQVSRDQAHYLFGVMRLGVGDWVALFNGRDGEWQARVGEAGKRGGELLCE 68
Query: 103 LEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDN 162
+ L +P W +FA +K R D++VEK E+GA + P+ TE S +I +
Sbjct: 69 SQSAPLRMPPDL-WLLFAP---IKKARTDFIVEKAAEMGAARIVPVQTEF-TNSERIRQD 123
Query: 163 GFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLL---PLVSQSKLAFVAIAEATP 219
+ +A GG + E+ K+ LL P Q +A +
Sbjct: 124 RLQA------HAVEAAEQCGGTYVPEVA--ELQKLGPLLDRWPAERQLMFCDETLAGRSS 175
Query: 220 LVTALSSSRNES------SG--LIIVGPEGDFTEKEVNKIVEA-GATAVGLGPHRLRVE 269
++ L + + E+ SG I++GPEG F+E+E ++ A AV LGP LR +
Sbjct: 176 ALSGLLAGQGENARTGGPSGPWAILIGPEGGFSERERARLAALPNAHAVSLGPRILRAD 234
>TIGR_CMR|SPO_3629 [details] [associations]
symbol:SPO_3629 "conserved hypothetical protein"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR006700 Pfam:PF04452 PIRSF:PIRSF015601 GO:GO:0005737
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0008168
InterPro:IPR015947 SUPFAM:SSF88697 GO:GO:0006364 KO:K09761
ProtClustDB:PRK11713 TIGRFAMs:TIGR00046 HOGENOM:HOG000015266
OMA:PWLLFAP RefSeq:YP_168823.1 ProteinModelPortal:Q5LMD5
GeneID:3195522 KEGG:sil:SPO3629 PATRIC:23380737 Uniprot:Q5LMD5
Length = 251
Score = 164 (62.8 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 65/239 (27%), Positives = 109/239 (45%)
Query: 44 IPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVA- 102
+ + QG V+V D+ ++ V+RL D V LFNG+ G + + + G +++
Sbjct: 9 VEQALGQGQPVQVSRDQAHYLFGVMRLGVGDWVALFNGRDGEWQARVGEAGKRGGELLCE 68
Query: 103 LEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDN 162
+ L +P W +FA +K R D++VEK E+GA + P+ TE S +I +
Sbjct: 69 SQSAPLRMPPDL-WLLFAP---IKKARTDFIVEKAAEMGAARIVPVQTEF-TNSERIRQD 123
Query: 163 GFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLL---PLVSQSKLAFVAIAEATP 219
+ +A GG + E+ K+ LL P Q +A +
Sbjct: 124 RLQA------HAVEAAEQCGGTYVPEVA--ELQKLGPLLDRWPAERQLMFCDETLAGRSS 175
Query: 220 LVTALSSSRNES------SG--LIIVGPEGDFTEKEVNKIVEA-GATAVGLGPHRLRVE 269
++ L + + E+ SG I++GPEG F+E+E ++ A AV LGP LR +
Sbjct: 176 ALSGLLAGQGENARTGGPSGPWAILIGPEGGFSERERARLAALPNAHAVSLGPRILRAD 234
>UNIPROTKB|Q3AF05 [details] [associations]
symbol:CHY_0418 "Ribosomal RNA small subunit
methyltransferase E" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR006700
Pfam:PF04452 PIRSF:PIRSF015601 GO:GO:0005737 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0008168 InterPro:IPR015947
SUPFAM:SSF88697 GO:GO:0006364 eggNOG:COG1385 HOGENOM:HOG000015265
KO:K09761 TIGRFAMs:TIGR00046 RefSeq:YP_359279.1
ProteinModelPortal:Q3AF05 STRING:Q3AF05 GeneID:3727209
KEGG:chy:CHY_0418 PATRIC:21273997 OMA:EKRVAHW
BioCyc:CHYD246194:GJCN-419-MONOMER Uniprot:Q3AF05
Length = 248
Score = 163 (62.4 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 62/231 (26%), Positives = 99/231 (42%)
Query: 44 IPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGG--LIEGCIQRIDRTGLDVV 101
+P +QG + GD+ H+ KVLR+ +++ L + + L + R D L +
Sbjct: 6 LPPGQTQGDYAYLTGDDAKHVAKVLRIKPGEKLTLQDDQEFRYLCQVIAVRKDLVQLKI- 64
Query: 102 ALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTP---LLTELHLQSRK 158
LE K+V NV G KG + D++V+K TELG + P + T + RK
Sbjct: 65 -LEKKKVVTRPPV--NVTLVQGVPKGDKMDFIVQKATELGVYRIIPVETIRTVVVFDERK 121
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT 218
D C + +A G R+ E+ P + + L +S + + E
Sbjct: 122 KKDR----CERWQKIAYEAAKQAGVSRVPEIF--PVIDLKALPEFISDALILVPYEGEEQ 175
Query: 219 PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVE 269
+ L + + +I+GPEG F E+ + GA V LGP LR E
Sbjct: 176 TSLKQLLNKEAVKNVTVIIGPEGGFDPGEIEYLKSFGAVTVSLGPRILRTE 226
>TIGR_CMR|CHY_0418 [details] [associations]
symbol:CHY_0418 "conserved hypothetical protein TIGR00046"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006700 Pfam:PF04452 PIRSF:PIRSF015601
GO:GO:0005737 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0008168
InterPro:IPR015947 SUPFAM:SSF88697 GO:GO:0006364 eggNOG:COG1385
HOGENOM:HOG000015265 KO:K09761 TIGRFAMs:TIGR00046
RefSeq:YP_359279.1 ProteinModelPortal:Q3AF05 STRING:Q3AF05
GeneID:3727209 KEGG:chy:CHY_0418 PATRIC:21273997 OMA:EKRVAHW
BioCyc:CHYD246194:GJCN-419-MONOMER Uniprot:Q3AF05
Length = 248
Score = 163 (62.4 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 62/231 (26%), Positives = 99/231 (42%)
Query: 44 IPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGG--LIEGCIQRIDRTGLDVV 101
+P +QG + GD+ H+ KVLR+ +++ L + + L + R D L +
Sbjct: 6 LPPGQTQGDYAYLTGDDAKHVAKVLRIKPGEKLTLQDDQEFRYLCQVIAVRKDLVQLKI- 64
Query: 102 ALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTP---LLTELHLQSRK 158
LE K+V NV G KG + D++V+K TELG + P + T + RK
Sbjct: 65 -LEKKKVVTRPPV--NVTLVQGVPKGDKMDFIVQKATELGVYRIIPVETIRTVVVFDERK 121
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT 218
D C + +A G R+ E+ P + + L +S + + E
Sbjct: 122 KKDR----CERWQKIAYEAAKQAGVSRVPEIF--PVIDLKALPEFISDALILVPYEGEEQ 175
Query: 219 PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVE 269
+ L + + +I+GPEG F E+ + GA V LGP LR E
Sbjct: 176 TSLKQLLNKEAVKNVTVIIGPEGGFDPGEIEYLKSFGAVTVSLGPRILRTE 226
>UNIPROTKB|Q486L8 [details] [associations]
symbol:CPS_1254 "Ribosomal RNA small subunit
methyltransferase E" species:167879 "Colwellia psychrerythraea 34H"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006700 Pfam:PF04452 PIRSF:PIRSF015601
GO:GO:0005737 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0008168
InterPro:IPR015947 SUPFAM:SSF88697 GO:GO:0006364 eggNOG:COG1385
HOGENOM:HOG000015265 KO:K09761 OMA:MTQHVQG ProtClustDB:PRK11713
TIGRFAMs:TIGR00046 RefSeq:YP_267997.1 ProteinModelPortal:Q486L8
SMR:Q486L8 STRING:Q486L8 GeneID:3520522 KEGG:cps:CPS_1254
PATRIC:21465745 BioCyc:CPSY167879:GI48-1335-MONOMER Uniprot:Q486L8
Length = 244
Score = 161 (61.7 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 58/231 (25%), Positives = 97/231 (41%)
Query: 45 PRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGL-IEGCIQRIDRTGL 98
PR F Q V + D F H+ +VLRL D + LFNG+ + + +
Sbjct: 4 PRIFQQSQFALNETVPLSDDAFGHVVRVLRLKEGDTITLFNGEEAFQYTATLCNVSKKSA 63
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
DV + + N+ G +G R D+ ++K ELG ++TPL TE K
Sbjct: 64 DVKVTSQEEN--NSESPLNIHLGQGISRGDRMDFTLQKSVELGVNTITPLFTERC--GVK 119
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT 218
+ + I SA G+ +V P + D L S K+ A+ +
Sbjct: 120 LNAERLEKKRQQWQKIVISACEQSGRASVPIVAEPMLLADWLKQETSALKINLHPKAQHS 179
Query: 219 PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVE 269
+ + ++R +++GPEG +++E+ + ++ V LGP LR E
Sbjct: 180 IMSLPMENTRVR----LLIGPEGGLSDEEITQANDSDFHDVLLGPRVLRTE 226
>TIGR_CMR|CPS_1254 [details] [associations]
symbol:CPS_1254 "conserved hypothetical protein TIGR00046"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR006700 Pfam:PF04452 PIRSF:PIRSF015601 GO:GO:0005737
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0008168
InterPro:IPR015947 SUPFAM:SSF88697 GO:GO:0006364 eggNOG:COG1385
HOGENOM:HOG000015265 KO:K09761 OMA:MTQHVQG ProtClustDB:PRK11713
TIGRFAMs:TIGR00046 RefSeq:YP_267997.1 ProteinModelPortal:Q486L8
SMR:Q486L8 STRING:Q486L8 GeneID:3520522 KEGG:cps:CPS_1254
PATRIC:21465745 BioCyc:CPSY167879:GI48-1335-MONOMER Uniprot:Q486L8
Length = 244
Score = 161 (61.7 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 58/231 (25%), Positives = 97/231 (41%)
Query: 45 PRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGL-IEGCIQRIDRTGL 98
PR F Q V + D F H+ +VLRL D + LFNG+ + + +
Sbjct: 4 PRIFQQSQFALNETVPLSDDAFGHVVRVLRLKEGDTITLFNGEEAFQYTATLCNVSKKSA 63
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
DV + + N+ G +G R D+ ++K ELG ++TPL TE K
Sbjct: 64 DVKVTSQEEN--NSESPLNIHLGQGISRGDRMDFTLQKSVELGVNTITPLFTERC--GVK 119
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT 218
+ + I SA G+ +V P + D L S K+ A+ +
Sbjct: 120 LNAERLEKKRQQWQKIVISACEQSGRASVPIVAEPMLLADWLKQETSALKINLHPKAQHS 179
Query: 219 PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVE 269
+ + ++R +++GPEG +++E+ + ++ V LGP LR E
Sbjct: 180 IMSLPMENTRVR----LLIGPEGGLSDEEITQANDSDFHDVLLGPRVLRTE 226
>UNIPROTKB|Q74G06 [details] [associations]
symbol:rsmE "Ribosomal RNA small subunit methyltransferase
E" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR006700 Pfam:PF04452 PIRSF:PIRSF015601 GO:GO:0005737
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0008168
InterPro:IPR015947 SUPFAM:SSF88697 GO:GO:0006364
HOGENOM:HOG000015265 KO:K09761 ProtClustDB:PRK11713
TIGRFAMs:TIGR00046 OMA:GERMEFT RefSeq:NP_951505.1
ProteinModelPortal:Q74G06 GeneID:2686240 KEGG:gsu:GSU0446
PATRIC:22023638 BioCyc:GSUL243231:GH27-437-MONOMER Uniprot:Q74G06
Length = 260
Score = 115 (45.5 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 34/101 (33%), Positives = 45/101 (44%)
Query: 51 GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVL 110
G V V GD F HM + LRL + V L +GK G I + R L V E ++
Sbjct: 13 GKNVVVRGDLFRHMARSLRLKIDTEVILADGKEAECTGVITAMGRDSLTVTISERRQIRG 72
Query: 111 PQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE 151
W G KG + + +++K TELG V P L E
Sbjct: 73 DGDGLWLTLCQ-GLPKGDKMELILQKSTELGVSEVVPFLAE 112
Score = 82 (33.9 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 218 TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVE 269
T L L++++ ++VGPEG FT E + EAG V LG LR E
Sbjct: 177 TTLAGVLAAAQTPKRIAVVVGPEGGFTAAEAAEAREAGFVPVTLGRRILRTE 228
>TIGR_CMR|GSU_0446 [details] [associations]
symbol:GSU_0446 "conserved hypothetical protein TIGR00046"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR006700 Pfam:PF04452 PIRSF:PIRSF015601 GO:GO:0005737
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0008168
InterPro:IPR015947 SUPFAM:SSF88697 GO:GO:0006364
HOGENOM:HOG000015265 KO:K09761 ProtClustDB:PRK11713
TIGRFAMs:TIGR00046 OMA:GERMEFT RefSeq:NP_951505.1
ProteinModelPortal:Q74G06 GeneID:2686240 KEGG:gsu:GSU0446
PATRIC:22023638 BioCyc:GSUL243231:GH27-437-MONOMER Uniprot:Q74G06
Length = 260
Score = 115 (45.5 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 34/101 (33%), Positives = 45/101 (44%)
Query: 51 GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVL 110
G V V GD F HM + LRL + V L +GK G I + R L V E ++
Sbjct: 13 GKNVVVRGDLFRHMARSLRLKIDTEVILADGKEAECTGVITAMGRDSLTVTISERRQIRG 72
Query: 111 PQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE 151
W G KG + + +++K TELG V P L E
Sbjct: 73 DGDGLWLTLCQ-GLPKGDKMELILQKSTELGVSEVVPFLAE 112
Score = 82 (33.9 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 218 TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVE 269
T L L++++ ++VGPEG FT E + EAG V LG LR E
Sbjct: 177 TTLAGVLAAAQTPKRIAVVVGPEGGFTAAEAAEAREAGFVPVTLGRRILRTE 228
>UNIPROTKB|Q0C2F7 [details] [associations]
symbol:HNE_1369 "Ribosomal RNA small subunit
methyltransferase E" species:228405 "Hyphomonas neptunium ATCC
15444" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006700 Pfam:PF04452 PIRSF:PIRSF015601
GO:GO:0005737 GO:GO:0008168 InterPro:IPR015947 SUPFAM:SSF88697
EMBL:CP000158 GenomeReviews:CP000158_GR GO:GO:0006364
eggNOG:COG1385 KO:K09761 OMA:MTQHVQG ProtClustDB:PRK11713
TIGRFAMs:TIGR00046 RefSeq:YP_760086.1 ProteinModelPortal:Q0C2F7
STRING:Q0C2F7 GeneID:4290472 KEGG:hne:HNE_1369 PATRIC:32215557
HOGENOM:HOG000015266 BioCyc:HNEP228405:GI69-1403-MONOMER
Uniprot:Q0C2F7
Length = 256
Score = 120 (47.3 bits), Expect = 7.6e-09, Sum P(2) = 7.6e-09
Identities = 34/126 (26%), Positives = 58/126 (46%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
IPR F ++ G V ++ ++ ++ +VLRL V LFNG+ G + +
Sbjct: 4 IPRLFVDAPLAEAGAVALDDEQSNYLLRVLRLEDGASVRLFNGRDGEWTATVHKTSAKRA 63
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
+ + P + F +K + D ++EK TELGA + P+LTE Q+R
Sbjct: 64 EATPSRQTR-TQPGQIGTRLTLLFAPVKKDQTDLILEKATELGAARIRPVLTE-RTQTRT 121
Query: 159 IGDNGF 164
+ + F
Sbjct: 122 VRADRF 127
Score = 71 (30.1 bits), Expect = 7.6e-09, Sum P(2) = 7.6e-09
Identities = 22/70 (31%), Positives = 29/70 (41%)
Query: 217 ATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGAT-AVGLGPHRLRVEXXXXXX 275
A P++ L + S+ I+ GPEG FT E + T V LGP LR E
Sbjct: 186 ARPMLEVLEELKGRSAA-ILTGPEGGFTPAERAFLRGRAETWPVSLGPRILRAETAAISA 244
Query: 276 XXXXM-LCSD 284
+C D
Sbjct: 245 MTLWQAVCGD 254
>UNIPROTKB|Q71ZK0 [details] [associations]
symbol:LMOf2365_1489 "Ribosomal RNA small subunit
methyltransferase E" species:265669 "Listeria monocytogenes
serotype 4b str. F2365" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR006700
Pfam:PF04452 PIRSF:PIRSF015601 GO:GO:0005737 EMBL:AE017262
GenomeReviews:AE017262_GR GO:GO:0008168 InterPro:IPR015947
SUPFAM:SSF88697 GO:GO:0006364 eggNOG:COG1385 HOGENOM:HOG000015265
KO:K09761 ProtClustDB:PRK11713 TIGRFAMs:TIGR00046 OMA:EKRVAHW
RefSeq:YP_014087.1 ProteinModelPortal:Q71ZK0 STRING:Q71ZK0
GeneID:2798672 KEGG:lmf:LMOf2365_1489 PATRIC:20324217
Uniprot:Q71ZK0
Length = 255
Score = 101 (40.6 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 31/99 (31%), Positives = 50/99 (50%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVEL-FNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHT 114
+ G+ F H+T+V+R+ +D+V + F K + CI I D V L +K L + T
Sbjct: 19 ITGENFHHITRVMRMKESDQVFIVFPSK----KTCIAAITAINDDEVFLNLVKW-LEEDT 73
Query: 115 QW--NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE 151
+ + A G KG + + +++K TELGA P E
Sbjct: 74 ELPIEITIASGLPKGDKLELIIQKSTELGAHKFIPYKAE 112
Score = 90 (36.7 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 20/54 (37%), Positives = 28/54 (51%)
Query: 216 EATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVE 269
E + L + + S L + GPEG +EKE+ ++ E A GLGP LR E
Sbjct: 180 EDSALANLFQTMKPGQSVLCVFGPEGGISEKELMQLQEVNAKLAGLGPRILRTE 233
>UNIPROTKB|Q83AE1 [details] [associations]
symbol:CBU_1960 "Ribosomal RNA small subunit
methyltransferase E" species:227377 "Coxiella burnetii RSA 493"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006700 Pfam:PF04452 PIRSF:PIRSF015601
GO:GO:0005737 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0008168
InterPro:IPR015947 SUPFAM:SSF88697 GO:GO:0006364
HOGENOM:HOG000015265 KO:K09761 ProtClustDB:PRK11713
TIGRFAMs:TIGR00046 OMA:GERMEFT RefSeq:NP_820935.2
ProteinModelPortal:Q83AE1 GeneID:1209873 KEGG:cbu:CBU_1960
PATRIC:17932661 BioCyc:CBUR227377:GJ7S-1934-MONOMER Uniprot:Q83AE1
Length = 260
Score = 143 (55.4 bits), Expect = 8.4e-08, P = 8.4e-08
Identities = 54/228 (23%), Positives = 98/228 (42%)
Query: 45 PRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE 104
P S V ++ + ++ VLRL ++ LFNG G G I RI + +++
Sbjct: 28 PDQLSVDSTVTLDSRNYHYLLNVLRLREGHKIILFNGDGNNYGGRITRIQKKQVEITI-- 85
Query: 105 DLKLVLPQHTQWNVFAAFGT--LKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDN 162
D K T+ ++F G + + D+ ++K ELG + PL+TE K
Sbjct: 86 DSKEA--GRTESSLFIELGQGISRSEKMDYAIQKAVELGVNRIVPLITERTSTKPKTQK- 142
Query: 163 GFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVT 222
L+ + G + + G + E+ M+ L +SQ + +
Sbjct: 143 --LA--HWQGVLISGCEQSGRCCIPEL-----MQAQSLSDWLSQKREGLSLVCHPNAQ-N 192
Query: 223 ALSSSRNESSGL-IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVE 269
+L+ + S + +++GPEG ++ EV + ++G + LGP LR E
Sbjct: 193 SLADFKTTSQRITLLIGPEGGLSDDEVQRATQSGFQVLFLGPRILRTE 240
>TIGR_CMR|CBU_1960 [details] [associations]
symbol:CBU_1960 "conserved hypothetical protein TIGR00046"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR006700 Pfam:PF04452 PIRSF:PIRSF015601 GO:GO:0005737
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0008168
InterPro:IPR015947 SUPFAM:SSF88697 GO:GO:0006364
HOGENOM:HOG000015265 KO:K09761 ProtClustDB:PRK11713
TIGRFAMs:TIGR00046 OMA:GERMEFT RefSeq:NP_820935.2
ProteinModelPortal:Q83AE1 GeneID:1209873 KEGG:cbu:CBU_1960
PATRIC:17932661 BioCyc:CBUR227377:GJ7S-1934-MONOMER Uniprot:Q83AE1
Length = 260
Score = 143 (55.4 bits), Expect = 8.4e-08, P = 8.4e-08
Identities = 54/228 (23%), Positives = 98/228 (42%)
Query: 45 PRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE 104
P S V ++ + ++ VLRL ++ LFNG G G I RI + +++
Sbjct: 28 PDQLSVDSTVTLDSRNYHYLLNVLRLREGHKIILFNGDGNNYGGRITRIQKKQVEITI-- 85
Query: 105 DLKLVLPQHTQWNVFAAFGT--LKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDN 162
D K T+ ++F G + + D+ ++K ELG + PL+TE K
Sbjct: 86 DSKEA--GRTESSLFIELGQGISRSEKMDYAIQKAVELGVNRIVPLITERTSTKPKTQK- 142
Query: 163 GFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVT 222
L+ + G + + G + E+ M+ L +SQ + +
Sbjct: 143 --LA--HWQGVLISGCEQSGRCCIPEL-----MQAQSLSDWLSQKREGLSLVCHPNAQ-N 192
Query: 223 ALSSSRNESSGL-IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVE 269
+L+ + S + +++GPEG ++ EV + ++G + LGP LR E
Sbjct: 193 SLADFKTTSQRITLLIGPEGGLSDDEVQRATQSGFQVLFLGPRILRTE 240
>UNIPROTKB|Q60CQ8 [details] [associations]
symbol:MCA0018 "Ribosomal RNA small subunit
methyltransferase E" species:243233 "Methylococcus capsulatus str.
Bath" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006700 Pfam:PF04452 PIRSF:PIRSF015601
GO:GO:0005737 GO:GO:0008168 EMBL:AE017282 GenomeReviews:AE017282_GR
InterPro:IPR015947 SUPFAM:SSF88697 GO:GO:0006364
HOGENOM:HOG000015265 KO:K09761 OMA:MTQHVQG TIGRFAMs:TIGR00046
RefSeq:YP_112559.1 ProteinModelPortal:Q60CQ8 GeneID:3102640
KEGG:mca:MCA0018 PATRIC:22603749 Uniprot:Q60CQ8
Length = 243
Score = 135 (52.6 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 56/230 (24%), Positives = 96/230 (41%)
Query: 40 SRGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
SR +P + G V ++G+ ++ VLRL + +FNG+GG I R +
Sbjct: 4 SRLYLPVPLASGADVVLDGERAHYLRTVLRLKRGFDLTVFNGEGGEFAARIGVCHREAVS 63
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
+ + ++ +V G +G R D ++K ELG ++TPL TE +
Sbjct: 64 LTV--GAHRPDDRESRLDVRLGLGISRGERMDLAIQKAVELGVGAITPLFTERCVVQLD- 120
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
G+ + + + G R+ E++ P ++ LP + L A
Sbjct: 121 GERKAQRLEHWRRVVWAACEQSGRNRVPEVL--EPRSLEAWLP--EAAGLRICLDPHAVH 176
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVE 269
+ L+ S ++ GPEG F++ E + V A + LGP LR E
Sbjct: 177 GLRELAPP--VGSVTLLSGPEGGFSDAERDMAVAAAFVPIRLGPRVLRTE 224
>DICTYBASE|DDB_G0282549 [details] [associations]
symbol:DDB_G0282549 species:44689 "Dictyostelium
discoideum" [GO:0032259 "methylation" evidence=IEA] [GO:0008168
"methyltransferase activity" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] InterPro:IPR006700 Pfam:PF04452
dictyBase:DDB_G0282549 EMBL:AAFI02000047 GO:GO:0008168
GO:GO:0032259 InterPro:IPR015947 SUPFAM:SSF88697 GO:GO:0006364
eggNOG:COG1385 TIGRFAMs:TIGR00046 RefSeq:XP_640119.1
ProteinModelPortal:Q54SC0 EnsemblProtists:DDB0204831 GeneID:8623653
KEGG:ddi:DDB_G0282549 InParanoid:Q54SC0 OMA:RAEWMIE Uniprot:Q54SC0
Length = 314
Score = 106 (42.4 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 37/146 (25%), Positives = 66/146 (45%)
Query: 117 NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIAN 176
N+ A K RA+W++EK TE+G +++ L +E S G + + I
Sbjct: 113 NIDLATSLPKIQRAEWMIEKLTEIGVKNLFLLESEYSKSSPSSGSLTSNKLDRFERIIIE 172
Query: 177 SAFVYGGQRLHEMVLNPPMKI---DGL-LPLVSQSKLAFVAIAEAT----PLV-TALSSS 227
S+ L ++ P K D + + QSK + + + + PL+ + +
Sbjct: 173 SSKQSKNNHLMNIIPPQPYKQFLKDKFNIDTIKQSKYSHIFLFDPNGKPLPLIFNEIKEN 232
Query: 228 RNES--SGLIIVGPEGDFTEKEVNKI 251
N + LI++GPEG FT E+N++
Sbjct: 233 NNNNVRDTLILIGPEGGFTNNEINQL 258
Score = 63 (27.2 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKG 83
F GG + + G + H+ K LRL + +E+F+ G
Sbjct: 11 FVNGGSLLLSGQQHSHLKKSLRLKVGNVIEVFDSNG 46
>UNIPROTKB|Q97P63 [details] [associations]
symbol:SP_1781 "Ribosomal RNA small subunit
methyltransferase E" species:170187 "Streptococcus pneumoniae
TIGR4" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR006700 Pfam:PF04452 PIRSF:PIRSF015601 GO:GO:0005737
EMBL:AE005672 GenomeReviews:AE005672_GR GO:GO:0008168
InterPro:IPR015947 SUPFAM:SSF88697 GO:GO:0006364
HOGENOM:HOG000015265 KO:K09761 ProtClustDB:PRK11713
TIGRFAMs:TIGR00046 OMA:GERMEFT PIR:E95207 RefSeq:NP_346214.1
HSSP:P54461 ProteinModelPortal:Q97P63
EnsemblBacteria:EBSTRT00000026776 GeneID:931053 KEGG:spn:SP_1781
PATRIC:19708025 Uniprot:Q97P63
Length = 247
Score = 87 (35.7 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 20/54 (37%), Positives = 26/54 (48%)
Query: 216 EATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVE 269
EA L+ A++ + L I GPEG + E+ GA GLGP LR E
Sbjct: 176 EAAALLQAVTGLETGAKLLFIFGPEGGLSPAEIESFEAKGAVLAGLGPRILRAE 229
Score = 73 (30.8 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 29/104 (27%), Positives = 48/104 (46%)
Query: 46 RFFSQGGI---VRVEGDEFW-HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVV 101
++F +G V +E E HM +V+RL D V L G I+ + +D
Sbjct: 3 QYFVKGSAISPVTIEDKETSKHMFQVMRLKEEDEVTLVFDDG--IKRLARVLDMENRQFE 60
Query: 102 ALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSV 145
+++L + Q V A G KG + +++ +K TELGA +
Sbjct: 61 LVQELNDNVELPVQ--VTIASGFPKGDKLEFIAQKVTELGASQI 102
>UNIPROTKB|Q81LS5 [details] [associations]
symbol:BAS4210 "Ribosomal RNA small subunit
methyltransferase E" species:1392 "Bacillus anthracis" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR006700 Pfam:PF04452 PIRSF:PIRSF015601 GO:GO:0005737
EMBL:AE016879 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GO:GO:0008168 InterPro:IPR015947
SUPFAM:SSF88697 GO:GO:0006364 HOGENOM:HOG000015265 KO:K09761
ProtClustDB:PRK11713 TIGRFAMs:TIGR00046 RefSeq:NP_846759.2
RefSeq:YP_030458.1 ProteinModelPortal:Q81LS5 SMR:Q81LS5
EnsemblBacteria:EBBACT00000010841 EnsemblBacteria:EBBACT00000019990
GeneID:1088266 GeneID:2848801 KEGG:ban:BA_4536 KEGG:bat:BAS4210
PATRIC:18786660 BioCyc:BANT260799:GJAJ-4266-MONOMER Uniprot:Q81LS5
Length = 249
Score = 84 (34.6 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 27/97 (27%), Positives = 46/97 (47%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVEL-FNGKGGLIEGCIQRIDRTGLDVVALE--DLKLVL 110
+R+ GD+ H+ +V+R+S D + NG+ + I I ++ +E + L
Sbjct: 16 IRIVGDDVHHIARVMRMSAGDHIYCCVNGRTAVCS--IDEITSEFINTAIVEWVEASSEL 73
Query: 111 PQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTP 147
P V A G KG + + + +K TELGA + P
Sbjct: 74 PVF----VTIASGLPKGDKLELIFQKGTELGAAAFLP 106
Score = 74 (31.1 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 216 EATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVE 269
E + AL+ + LI+ GPEG E+E+ + E LGP LR E
Sbjct: 178 EKSNFAKALTMMKPGQKLLIVFGPEGGLAEEEITVLREHNFVPCSLGPRILRTE 231
>TIGR_CMR|BA_4536 [details] [associations]
symbol:BA_4536 "conserved hypothetical protein TIGR00046"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR006700 Pfam:PF04452 PIRSF:PIRSF015601 GO:GO:0005737
EMBL:AE016879 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GO:GO:0008168 InterPro:IPR015947
SUPFAM:SSF88697 GO:GO:0006364 HOGENOM:HOG000015265 KO:K09761
ProtClustDB:PRK11713 TIGRFAMs:TIGR00046 RefSeq:NP_846759.2
RefSeq:YP_030458.1 ProteinModelPortal:Q81LS5 SMR:Q81LS5
EnsemblBacteria:EBBACT00000010841 EnsemblBacteria:EBBACT00000019990
GeneID:1088266 GeneID:2848801 KEGG:ban:BA_4536 KEGG:bat:BAS4210
PATRIC:18786660 BioCyc:BANT260799:GJAJ-4266-MONOMER Uniprot:Q81LS5
Length = 249
Score = 84 (34.6 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 27/97 (27%), Positives = 46/97 (47%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVEL-FNGKGGLIEGCIQRIDRTGLDVVALE--DLKLVL 110
+R+ GD+ H+ +V+R+S D + NG+ + I I ++ +E + L
Sbjct: 16 IRIVGDDVHHIARVMRMSAGDHIYCCVNGRTAVCS--IDEITSEFINTAIVEWVEASSEL 73
Query: 111 PQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTP 147
P V A G KG + + + +K TELGA + P
Sbjct: 74 PVF----VTIASGLPKGDKLELIFQKGTELGAAAFLP 106
Score = 74 (31.1 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 216 EATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVE 269
E + AL+ + LI+ GPEG E+E+ + E LGP LR E
Sbjct: 178 EKSNFAKALTMMKPGQKLLIVFGPEGGLAEEEITVLREHNFVPCSLGPRILRTE 231
>UNIPROTKB|Q8EIK7 [details] [associations]
symbol:rsmE "Ribosomal RNA small subunit methyltransferase
E" species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR006700 Pfam:PF04452 PIRSF:PIRSF015601 GO:GO:0005737
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0008168
InterPro:IPR015947 SUPFAM:SSF88697 GO:GO:0006364
HOGENOM:HOG000015265 KO:K09761 OMA:MTQHVQG ProtClustDB:PRK11713
TIGRFAMs:TIGR00046 RefSeq:NP_716463.1 HSSP:P44627
ProteinModelPortal:Q8EIK7 SMR:Q8EIK7 GeneID:1168681
KEGG:son:SO_0832 PATRIC:23521329 Uniprot:Q8EIK7
Length = 243
Score = 114 (45.2 bits), Expect = 0.00020, P = 0.00020
Identities = 52/228 (22%), Positives = 88/228 (38%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQH 113
+ ++ D H+ KVLR+ +++ LFNG G + + ID V P
Sbjct: 18 LNLDEDGAAHIGKVLRMGNGEQISLFNGDGH--DYLAEIIDAAKKSVTVKVLSCEANPSE 75
Query: 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGF 173
+ N+ +G R ++ ++K ELG ++TPL ++ + G+ +
Sbjct: 76 SPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSD-RCGVKLSGERLDKKIQQWQKI 134
Query: 174 IANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSG 233
+ SA G R V+ P M++ + S L A + L S
Sbjct: 135 VI-SACEQSG-RSQVPVVRPAMELQQWCSEPT-SALKLNLHPRAAHGINGLDLSHTRVR- 190
Query: 234 LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVEXXXXXXXXXXML 281
+++GPEG + +E+ T V LGP LR E L
Sbjct: 191 -LLIGPEGGLSAEEIAMTETHQFTDVLLGPRVLRTETASLTAITALQL 237
>TIGR_CMR|SO_0832 [details] [associations]
symbol:SO_0832 "conserved hypothetical protein TIGR00046"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR006700 Pfam:PF04452 PIRSF:PIRSF015601 GO:GO:0005737
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0008168
InterPro:IPR015947 SUPFAM:SSF88697 GO:GO:0006364
HOGENOM:HOG000015265 KO:K09761 OMA:MTQHVQG ProtClustDB:PRK11713
TIGRFAMs:TIGR00046 RefSeq:NP_716463.1 HSSP:P44627
ProteinModelPortal:Q8EIK7 SMR:Q8EIK7 GeneID:1168681
KEGG:son:SO_0832 PATRIC:23521329 Uniprot:Q8EIK7
Length = 243
Score = 114 (45.2 bits), Expect = 0.00020, P = 0.00020
Identities = 52/228 (22%), Positives = 88/228 (38%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQH 113
+ ++ D H+ KVLR+ +++ LFNG G + + ID V P
Sbjct: 18 LNLDEDGAAHIGKVLRMGNGEQISLFNGDGH--DYLAEIIDAAKKSVTVKVLSCEANPSE 75
Query: 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGF 173
+ N+ +G R ++ ++K ELG ++TPL ++ + G+ +
Sbjct: 76 SPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSD-RCGVKLSGERLDKKIQQWQKI 134
Query: 174 IANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSG 233
+ SA G R V+ P M++ + S L A + L S
Sbjct: 135 VI-SACEQSG-RSQVPVVRPAMELQQWCSEPT-SALKLNLHPRAAHGINGLDLSHTRVR- 190
Query: 234 LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVEXXXXXXXXXXML 281
+++GPEG + +E+ T V LGP LR E L
Sbjct: 191 -LLIGPEGGLSAEEIAMTETHQFTDVLLGPRVLRTETASLTAITALQL 237
>UNIPROTKB|Q9KUP6 [details] [associations]
symbol:VC_0469 "Ribosomal RNA small subunit
methyltransferase E" species:243277 "Vibrio cholerae O1 biovar El
Tor str. N16961" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR006700 Pfam:PF04452
PIRSF:PIRSF015601 GO:GO:0005737 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0008168 InterPro:IPR015947
SUPFAM:SSF88697 GO:GO:0006364 KO:K09761 OMA:MTQHVQG
ProtClustDB:PRK11713 TIGRFAMs:TIGR00046 HSSP:P44627 PIR:B82319
RefSeq:NP_230123.1 ProteinModelPortal:Q9KUP6 SMR:Q9KUP6
DNASU:2615131 GeneID:2615131 KEGG:vch:VC0469 PATRIC:20080033
Uniprot:Q9KUP6
Length = 243
Score = 111 (44.1 bits), Expect = 0.00044, P = 0.00044
Identities = 54/228 (23%), Positives = 96/228 (42%)
Query: 45 PRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE 104
P Q G V + D H+ +VLR+ V LF+G G I + + + V E
Sbjct: 9 PEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKKQVLVNITE 68
Query: 105 DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGF 164
++ + ++ +G + ++ ++K ELG ++TPLL+E K+ + F
Sbjct: 69 RVENSIESPLDLHLGQVIS--RGDKMEFTIQKSVELGVTTITPLLSERC--GVKLDEKRF 124
Query: 165 LSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS-KLAFVAIAEAT--PLV 221
+ IA SA G+ + P M ++ +++ KL A+ + L
Sbjct: 125 EKKIQQWQKIAISACEQCGRNTVPEI-RPIMDLEAWCAEPTEALKLNLHPRAKYSLNTLP 183
Query: 222 TALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVE 269
T +S R +++GPEG + +E++ LGP LR E
Sbjct: 184 TPVSKVR------LLIGPEGGLSAEEIDMTRRYQFEETLLGPRVLRTE 225
>TIGR_CMR|VC_0469 [details] [associations]
symbol:VC_0469 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR006700
Pfam:PF04452 PIRSF:PIRSF015601 GO:GO:0005737 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0008168 InterPro:IPR015947
SUPFAM:SSF88697 GO:GO:0006364 KO:K09761 OMA:MTQHVQG
ProtClustDB:PRK11713 TIGRFAMs:TIGR00046 HSSP:P44627 PIR:B82319
RefSeq:NP_230123.1 ProteinModelPortal:Q9KUP6 SMR:Q9KUP6
DNASU:2615131 GeneID:2615131 KEGG:vch:VC0469 PATRIC:20080033
Uniprot:Q9KUP6
Length = 243
Score = 111 (44.1 bits), Expect = 0.00044, P = 0.00044
Identities = 54/228 (23%), Positives = 96/228 (42%)
Query: 45 PRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE 104
P Q G V + D H+ +VLR+ V LF+G G I + + + V E
Sbjct: 9 PEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKKQVLVNITE 68
Query: 105 DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGF 164
++ + ++ +G + ++ ++K ELG ++TPLL+E K+ + F
Sbjct: 69 RVENSIESPLDLHLGQVIS--RGDKMEFTIQKSVELGVTTITPLLSERC--GVKLDEKRF 124
Query: 165 LSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS-KLAFVAIAEAT--PLV 221
+ IA SA G+ + P M ++ +++ KL A+ + L
Sbjct: 125 EKKIQQWQKIAISACEQCGRNTVPEI-RPIMDLEAWCAEPTEALKLNLHPRAKYSLNTLP 183
Query: 222 TALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVE 269
T +S R +++GPEG + +E++ LGP LR E
Sbjct: 184 TPVSKVR------LLIGPEGGLSAEEIDMTRRYQFEETLLGPRVLRTE 225
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.138 0.411 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 291 276 0.00079 115 3 11 22 0.47 33
33 0.41 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 23
No. of states in DFA: 608 (65 KB)
Total size of DFA: 194 KB (2110 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.48u 0.17s 21.65t Elapsed: 00:00:01
Total cpu time: 21.48u 0.17s 21.65t Elapsed: 00:00:01
Start: Thu May 9 17:07:10 2013 End: Thu May 9 17:07:11 2013