BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045537
(291 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255562222|ref|XP_002522119.1| conserved hypothetical protein [Ricinus communis]
gi|223538718|gb|EEF40319.1| conserved hypothetical protein [Ricinus communis]
Length = 290
Score = 366 bits (939), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 198/293 (67%), Positives = 230/293 (78%), Gaps = 15/293 (5%)
Query: 1 MQSLAAAVRPRFVQFLNRPSLKPLSLRAFSSSSSDYANQSRGGIPRFF------SQGGIV 54
MQ+L +RPRF + L R LKPLSLRA+SSSS Y+NQSRGG+PRFF S+GGIV
Sbjct: 3 MQALMIPIRPRFTELLTRQWLKPLSLRAYSSSSE-YSNQSRGGLPRFFCEILPSSKGGIV 61
Query: 55 RVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHT 114
RV+GDEFWH+ KVLRLS +DR+ELFNGKG L+EGCI+RIDRTGLD VA+ D K+VLPQ
Sbjct: 62 RVQGDEFWHIVKVLRLSISDRIELFNGKGALVEGCIERIDRTGLDFVAVNDPKIVLPQTI 121
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
+W+VFAAFG+LKGGRADWLVEKCTELGA SVTPLLTE +S I DN
Sbjct: 122 KWHVFAAFGSLKGGRADWLVEKCTELGAHSVTPLLTE---RSPSISDNRVDRLERVI--- 175
Query: 175 ANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGL 234
A QRLHEMVLNPP K++GLLPL++ SKL+F+A AEATP+V L+SSR ESSGL
Sbjct: 176 --LAATKQCQRLHEMVLNPPTKVEGLLPLIADSKLSFLAAAEATPVVNVLASSRKESSGL 233
Query: 235 IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSDSQQ 287
IIVGPEGDFTE+E ++EAGATAVGLGP RLRVETAT+ALL TLML SD+QQ
Sbjct: 234 IIVGPEGDFTEREAALMMEAGATAVGLGPLRLRVETATMALLGTLMLWSDAQQ 286
>gi|225429203|ref|XP_002271957.1| PREDICTED: ribosomal RNA small subunit methyltransferase E-like
[Vitis vinifera]
Length = 287
Score = 362 bits (928), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 196/297 (65%), Positives = 228/297 (76%), Gaps = 16/297 (5%)
Query: 1 MQSLAAAVRPRFVQFLNRPSLKPLSLRAFSSSSSDYANQSRGGIPRFFSQ------GGIV 54
MQ+L R F + L R + +LR+FSSSSS +++QSRGG+PRFFS+ GGIV
Sbjct: 1 MQALGGGYR--FAELLPRSWRRSTALRSFSSSSSFFSDQSRGGLPRFFSEVLPPSKGGIV 58
Query: 55 RVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHT 114
RV+GDEFWHMTKVLRLS NDRVELFNGKGGL+EG I RIDRTGLD +ALED KLVLPQ +
Sbjct: 59 RVQGDEFWHMTKVLRLSVNDRVELFNGKGGLVEGSINRIDRTGLDFIALEDPKLVLPQSS 118
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
+W+VFAAFGTLKGGRADWLVEKCTELG SVTPLLTE +S I +N
Sbjct: 119 RWHVFAAFGTLKGGRADWLVEKCTELGTSSVTPLLTE---RSPSISENRVDRLQRVILAA 175
Query: 175 ANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGL 234
A QRLHEM LNPP ID LLP+V+QSKL+ VA+AEATP+ + L+SSR ES+GL
Sbjct: 176 AKQC-----QRLHEMTLNPPTTIDSLLPIVTQSKLSLVAVAEATPVFSVLTSSRRESTGL 230
Query: 235 IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSDSQQMPIP 291
+I+GPEGDFTEKE+N + EAGATAVGLGPHRLRVETATIALLATLML SDS++ P
Sbjct: 231 MIIGPEGDFTEKELNMMREAGATAVGLGPHRLRVETATIALLATLMLWSDSERPSEP 287
>gi|297736409|emb|CBI25132.3| unnamed protein product [Vitis vinifera]
Length = 410
Score = 361 bits (926), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 196/297 (65%), Positives = 228/297 (76%), Gaps = 16/297 (5%)
Query: 1 MQSLAAAVRPRFVQFLNRPSLKPLSLRAFSSSSSDYANQSRGGIPRFFSQ------GGIV 54
MQ+L R F + L R + +LR+FSSSSS +++QSRGG+PRFFS+ GGIV
Sbjct: 124 MQALGGGYR--FAELLPRSWRRSTALRSFSSSSSFFSDQSRGGLPRFFSEVLPPSKGGIV 181
Query: 55 RVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHT 114
RV+GDEFWHMTKVLRLS NDRVELFNGKGGL+EG I RIDRTGLD +ALED KLVLPQ +
Sbjct: 182 RVQGDEFWHMTKVLRLSVNDRVELFNGKGGLVEGSINRIDRTGLDFIALEDPKLVLPQSS 241
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
+W+VFAAFGTLKGGRADWLVEKCTELG SVTPLLTE +S I +N
Sbjct: 242 RWHVFAAFGTLKGGRADWLVEKCTELGTSSVTPLLTE---RSPSISENRVDRLQRVILAA 298
Query: 175 ANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGL 234
A QRLHEM LNPP ID LLP+V+QSKL+ VA+AEATP+ + L+SSR ES+GL
Sbjct: 299 AKQC-----QRLHEMTLNPPTTIDSLLPIVTQSKLSLVAVAEATPVFSVLTSSRRESTGL 353
Query: 235 IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSDSQQMPIP 291
+I+GPEGDFTEKE+N + EAGATAVGLGPHRLRVETATIALLATLML SDS++ P
Sbjct: 354 MIIGPEGDFTEKELNMMREAGATAVGLGPHRLRVETATIALLATLMLWSDSERPSEP 410
>gi|356574331|ref|XP_003555302.1| PREDICTED: ribosomal RNA small subunit methyltransferase E-like
[Glycine max]
Length = 281
Score = 348 bits (894), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 179/269 (66%), Positives = 212/269 (78%), Gaps = 14/269 (5%)
Query: 28 AFSSSSSDYANQSRGGIPRFFSQ------GGIVRVEGDEFWHMTKVLRLSTNDRVELFNG 81
AFSSSSSDY +QSRGG+PRF+S+ G ++RV+GDEFWHMTKVLRL+TNDRV+LFNG
Sbjct: 2 AFSSSSSDYGDQSRGGLPRFYSETLPPSKGSVIRVQGDEFWHMTKVLRLTTNDRVQLFNG 61
Query: 82 KGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELG 141
KG L+EGCIQ IDRTGLD VAL DL + PQ+TQ +VFA FGTLKGGRADWLVEKCTE G
Sbjct: 62 KGSLVEGCIQSIDRTGLDFVALNDLISIPPQNTQLHVFAGFGTLKGGRADWLVEKCTEFG 121
Query: 142 AQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLL 201
A SVTPLLTE S I +N +A S QRLHEMVL P++ID LL
Sbjct: 122 ANSVTPLLTE---HSPSISENRV--DRLKRVILAASK---QSQRLHEMVLKHPIEIDDLL 173
Query: 202 PLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGL 261
L++QSKL+ VA A+ATP+++AL+S E+SGLII+GPEGDFTEKEV+ ++EAGATAV L
Sbjct: 174 HLIAQSKLSLVATAKATPVLSALASLEKETSGLIIIGPEGDFTEKEVSMMMEAGATAVSL 233
Query: 262 GPHRLRVETATIALLATLMLCSDSQQMPI 290
GPHRLRVETATIALLAT+ML SDSQQ+ +
Sbjct: 234 GPHRLRVETATIALLATVMLWSDSQQISL 262
>gi|297852690|ref|XP_002894226.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297340068|gb|EFH70485.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 295
Score = 343 bits (879), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 186/301 (61%), Positives = 220/301 (73%), Gaps = 22/301 (7%)
Query: 1 MQSLAAAVRPRFVQF--LNRPSLKPLSLRAFSSSSSDYA------NQSRGGIPRFFS--- 49
M++LAAA RP F L R L P S ++F+S SS NQSRGG+PRFFS
Sbjct: 1 MRALAAASRPLFSDLPSLVRSWLPPSSFKSFASVSSSPPSDSDLRNQSRGGLPRFFSDDL 60
Query: 50 ---QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDL 106
+GG+VRV+G EFWHM KVLRL DRVELFNGKGGL+EGCIQ ID+TG+D +A ED
Sbjct: 61 PSRKGGVVRVQGSEFWHMAKVLRLKQEDRVELFNGKGGLVEGCIQSIDKTGVDFIAQEDQ 120
Query: 107 KLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLS 166
K++LPQ QW VFAAFGTLKGGRADWLVEKCTELGA SVTPLLTE +S I +N
Sbjct: 121 KVILPQGIQWQVFAAFGTLKGGRADWLVEKCTELGASSVTPLLTE---RSSIISENRVDR 177
Query: 167 CNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSS 226
A QRLH+MVLNPP+K D LL +S+SKL VA AEATPL+ A++S
Sbjct: 178 LERVSFAAAKQC-----QRLHQMVLNPPIKFDTLLGHISKSKLCLVATAEATPLLNAVNS 232
Query: 227 SRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSDSQ 286
S E+SG++IVGPEGDFT+KEV ++EAG+TAVGLGPHRLRVETATIALLATL++ SDSQ
Sbjct: 233 STKETSGILIVGPEGDFTKKEVEMMLEAGSTAVGLGPHRLRVETATIALLATLVMWSDSQ 292
Query: 287 Q 287
+
Sbjct: 293 E 293
>gi|79362513|ref|NP_175422.2| ribosomal RNA small subunit methyltransferase E [Arabidopsis
thaliana]
gi|49660069|gb|AAT68325.1| hypothetical protein At1g50000 [Arabidopsis thaliana]
gi|55740521|gb|AAV63853.1| hypothetical protein At1g50000 [Arabidopsis thaliana]
gi|332194384|gb|AEE32505.1| ribosomal RNA small subunit methyltransferase E [Arabidopsis
thaliana]
Length = 296
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 183/302 (60%), Positives = 217/302 (71%), Gaps = 22/302 (7%)
Query: 1 MQSLAAAVRPRFVQF--LNRPSLKPLSLRAFSSSSS------DYANQSRGGIPRFFS--- 49
M++LAAA RP F L R L S ++F++ SS + NQSRGG+PRFFS
Sbjct: 2 MRALAAASRPLFSDLPSLVRSWLPTSSFKSFATVSSSPPSDLNLRNQSRGGLPRFFSDDL 61
Query: 50 ---QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDL 106
+GG+VRV+G EFWHM KVLRL DRVELFNGKGGL+EGCIQ ID+TG+D +A ED
Sbjct: 62 PSRKGGVVRVQGSEFWHMAKVLRLKQEDRVELFNGKGGLVEGCIQSIDKTGVDFIAQEDQ 121
Query: 107 KLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLS 166
K++LPQ QW VFAAFGTLKGGRADWL+EKCTELGA SVTPLLTE +S I +N
Sbjct: 122 KVILPQGMQWQVFAAFGTLKGGRADWLIEKCTELGASSVTPLLTE---RSPIISENRVDR 178
Query: 167 CNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSS 226
A QRLH+MVLNPP+K LL + +SKL VA AEA PL+ A++S
Sbjct: 179 LERVSFAAAKQC-----QRLHQMVLNPPIKFGTLLDHILKSKLCLVATAEAKPLLNAVNS 233
Query: 227 SRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSDSQ 286
S ESSGL+IVGPEGDFT+KEV ++EAG TAVGLGPHRLRVETATIALLATL++ SDSQ
Sbjct: 234 SAKESSGLLIVGPEGDFTKKEVEMMLEAGGTAVGLGPHRLRVETATIALLATLVMWSDSQ 293
Query: 287 QM 288
+M
Sbjct: 294 EM 295
>gi|388503214|gb|AFK39673.1| unknown [Medicago truncatula]
Length = 280
Score = 337 bits (863), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 181/290 (62%), Positives = 216/290 (74%), Gaps = 18/290 (6%)
Query: 1 MQSLAAAVRPRFVQFLNRPSLKPLSLRAFSSSSSDYANQSRGGIPRFFSQ------GGIV 54
+Q+L R RF NR SL+ SL S +SDY +QSRGG+PRF+S+ G ++
Sbjct: 2 LQTLVVPARFRFA---NRISLRR-SLSRIRSFNSDYGDQSRGGLPRFYSEILPPSKGNVI 57
Query: 55 RVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHT 114
RV+GDEFWHMTKVLRLSTN RV+LFNGKGGL+EGCIQ IDRTGLD +AL DLKLV PQ+
Sbjct: 58 RVKGDEFWHMTKVLRLSTNARVQLFNGKGGLVEGCIQNIDRTGLDFIALTDLKLVPPQNF 117
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
Q +VF+ FGTLKGGRADWLVEKCTELGA SVTPLLTE +S I +N +
Sbjct: 118 QLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTE---RSPSISENRV--DRLERVIL 172
Query: 175 ANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGL 234
A S QRLHEM+L PP++I +L L++QSKL+ VA AEATP++ AL+S E+SGL
Sbjct: 173 AASKQC---QRLHEMILKPPVEIGDILHLIAQSKLSLVATAEATPVLNALTSPEKETSGL 229
Query: 235 IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSD 284
I+VGPEGDFTEKEVN ++EAGA AV LGPHRLRVETATIALL T+ML D
Sbjct: 230 IVVGPEGDFTEKEVNMMMEAGAKAVSLGPHRLRVETATIALLTTVMLWLD 279
>gi|449438311|ref|XP_004136932.1| PREDICTED: ribosomal RNA small subunit methyltransferase E-like
[Cucumis sativus]
gi|449495704|ref|XP_004159920.1| PREDICTED: ribosomal RNA small subunit methyltransferase E-like
[Cucumis sativus]
Length = 287
Score = 332 bits (850), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 178/286 (62%), Positives = 219/286 (76%), Gaps = 14/286 (4%)
Query: 7 AVRPRFVQFLNRPSLKPLSLRAFSSSSSDYANQSRGGIPRFFSQ------GGIVRVEGDE 60
A RP+ Q LN + +RA SSSS +NQSRGG+PRFFSQ G ++R+EGDE
Sbjct: 6 AFRPQLTQLLNPSCFRSFKVRALSSSSLPSSNQSRGGLPRFFSQVLPSYKGDVIRLEGDE 65
Query: 61 FWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFA 120
WHMTKVLRL T+DRVELFNG GGL+EG I+ I GL+++A+E+ K VLPQ TQW+VFA
Sbjct: 66 VWHMTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLEILAMEEPKSVLPQSTQWHVFA 125
Query: 121 AFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFV 180
A GTLKGGRADWLVEKCTELGA SVTPLLTE + I DN + IA +A
Sbjct: 126 ACGTLKGGRADWLVEKCTELGASSVTPLLTE---RCPTISDNRVQR----FERIALAA-T 177
Query: 181 YGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPE 240
QRLH+M LN P+KIDGLLP ++++KL+FVA+AEATPLV+AL+S++ ES GL+++GPE
Sbjct: 178 KQCQRLHQMNLNSPLKIDGLLPFINETKLSFVAVAEATPLVSALASTKIESGGLLVIGPE 237
Query: 241 GDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSDSQ 286
GDFTEKEVN + EAGA AVGLGP+RLRVETAT+A+L+TLML SDS+
Sbjct: 238 GDFTEKEVNMMKEAGAIAVGLGPYRLRVETATVAILSTLMLWSDSK 283
>gi|224060885|ref|XP_002300283.1| predicted protein [Populus trichocarpa]
gi|222847541|gb|EEE85088.1| predicted protein [Populus trichocarpa]
Length = 212
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 160/223 (71%), Positives = 181/223 (81%), Gaps = 11/223 (4%)
Query: 64 MTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAFG 123
MTKVLRL TNDRVELFNGKGGLIEGCI+RIDRTGLD VALED KLV P T+W+V+AAFG
Sbjct: 1 MTKVLRLGTNDRVELFNGKGGLIEGCIERIDRTGLDFVALEDPKLVPPLSTKWHVYAAFG 60
Query: 124 TLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGG 183
TLKG RADWL+EKCTELGA SVTPLLTE +S I +N + + I A
Sbjct: 61 TLKGDRADWLLEKCTELGAHSVTPLLTE---RSPSISEN---RVDRFRRVIL--AATKQS 112
Query: 184 QRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDF 243
QRLHEM+LNPP KI GLLPL SKL+F+A A ATP+V+ L+SSR ESSGL+IVGPEGDF
Sbjct: 113 QRLHEMILNPPTKIVGLLPL---SKLSFLATAGATPVVSVLTSSRKESSGLMIVGPEGDF 169
Query: 244 TEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSDSQ 286
TEKEVN +++AGA+AVGLGPHRLRVETAT+ALLATLML SDSQ
Sbjct: 170 TEKEVNMMMKAGASAVGLGPHRLRVETATMALLATLMLWSDSQ 212
>gi|242038259|ref|XP_002466524.1| hypothetical protein SORBIDRAFT_01g009310 [Sorghum bicolor]
gi|241920378|gb|EER93522.1| hypothetical protein SORBIDRAFT_01g009310 [Sorghum bicolor]
Length = 287
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 157/274 (57%), Positives = 195/274 (71%), Gaps = 14/274 (5%)
Query: 19 PSLKPLSLRAFSSSSSDYANQSRGGIPRFF------SQGGIVRVEGDEFWHMTKVLRLST 72
P + L L A + + S A+++RGG+PRF S+G ++R++GDEFWHMT+VLRL
Sbjct: 20 PRTRQLLLAAPARAHSGAASRARGGLPRFHAPSLPSSKGEVIRIQGDEFWHMTRVLRLGI 79
Query: 73 NDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADW 132
NDRVELF+G GGL EG I ++D+ G DV LED ++V PQ QW+VFAAFGTLKGGRADW
Sbjct: 80 NDRVELFDGAGGLAEGFIHKVDKGGSDVELLEDARIVAPQGIQWHVFAAFGTLKGGRADW 139
Query: 133 LVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLN 192
L+EKCTELGA SVTPLLTE + I +N A V QR+HEM L
Sbjct: 140 LIEKCTELGASSVTPLLTE---RCHTIAENRVDRLQRLV-----LAAVKQCQRIHEMSLK 191
Query: 193 PPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIV 252
PP++I LLP+VSQSKLAF+A AEA PL++ L S E SGL+IVGPEGDFTE+EV+ +
Sbjct: 192 PPIQISHLLPVVSQSKLAFLASAEAPPLLSVLPKSSTEQSGLLIVGPEGDFTEEEVHSLK 251
Query: 253 EAGATAVGLGPHRLRVETATIALLATLMLCSDSQ 286
AGA VGLGP RLRVETATI+LL+ LML SD++
Sbjct: 252 AAGAAPVGLGPCRLRVETATISLLSALMLWSDAK 285
>gi|115455113|ref|NP_001051157.1| Os03g0729700 [Oryza sativa Japonica Group]
gi|113549628|dbj|BAF13071.1| Os03g0729700, partial [Oryza sativa Japonica Group]
Length = 330
Score = 290 bits (742), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 153/261 (58%), Positives = 189/261 (72%), Gaps = 14/261 (5%)
Query: 33 SSDYANQSRGGIPRFFS------QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLI 86
S+ +++RGG+PRF S +G VR++GDEFWHMT+VLRL NDRVELF+G GGL+
Sbjct: 71 STAGGSRARGGLPRFHSPTLPSSKGEEVRIQGDEFWHMTRVLRLGINDRVELFDGAGGLV 130
Query: 87 EGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVT 146
EG IQ++D+ G DV LED +L+ P QW+V+AAFGTLKGGRADWLVEKCTELGA SVT
Sbjct: 131 EGSIQKVDKGGSDVKLLEDARLIAPDGIQWHVYAAFGTLKGGRADWLVEKCTELGACSVT 190
Query: 147 PLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQ 206
PLLTE + I +N A V QR+H M+LNPP++I L P+VSQ
Sbjct: 191 PLLTE---RCHTIAENRVDRLQRLV-----LAAVKQCQRIHGMLLNPPIQIADLQPVVSQ 242
Query: 207 SKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRL 266
SKLAFVA AE+ PL++ L S NE SGL+IVGPEGDFTE+EVN + +GA VGLGP RL
Sbjct: 243 SKLAFVASAESPPLLSTLPKSCNEESGLLIVGPEGDFTEEEVNVLKASGAVPVGLGPCRL 302
Query: 267 RVETATIALLATLMLCSDSQQ 287
RVETATI+LL+ LML SD+ +
Sbjct: 303 RVETATISLLSALMLWSDAHR 323
>gi|326520946|dbj|BAJ92836.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 347
Score = 277 bits (709), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 148/265 (55%), Positives = 186/265 (70%), Gaps = 15/265 (5%)
Query: 28 AFSSSSSDYANQSRGGIPRFFS------QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNG 81
A + S+ +++RGG+PRF S +G +VR++GDEFWHMT+VLRL NDRVELF+G
Sbjct: 79 AARAHSTAGTSRARGGLPRFHSPSLPSSKGEVVRIQGDEFWHMTRVLRLGINDRVELFDG 138
Query: 82 KGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELG 141
GGL+EG IQ++D+ G DV LE+ +L+ PQ QW+VFAAFGTLKGGRADWL+EKCTELG
Sbjct: 139 AGGLVEGSIQKVDKNGSDVELLENARLIAPQGIQWHVFAAFGTLKGGRADWLIEKCTELG 198
Query: 142 AQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLL 201
A SVTPLLTE + I +N A V QR+H+M L PP++I L
Sbjct: 199 ASSVTPLLTE---RCHTIAENRVDRLQRLV-----LAAVKQCQRVHDMSLKPPIQIHDLP 250
Query: 202 PLVSQSKLAFVAIAEATPLVTAL-SSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVG 260
VSQSKLAF+A AEA P+++ L E SGL+I+GPEGDFTE+EV + AGA VG
Sbjct: 251 LAVSQSKLAFLASAEAPPVLSVLPKCGSEEESGLLIIGPEGDFTEEEVKVLKAAGAVPVG 310
Query: 261 LGPHRLRVETATIALLATLMLCSDS 285
LGP RLRVETATI+LL+ LML SD+
Sbjct: 311 LGPCRLRVETATISLLSALMLWSDA 335
>gi|357115383|ref|XP_003559468.1| PREDICTED: ribosomal RNA small subunit methyltransferase E-like
[Brachypodium distachyon]
Length = 318
Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 144/264 (54%), Positives = 184/264 (69%), Gaps = 14/264 (5%)
Query: 33 SSDYANQSRGGIPRFFS------QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLI 86
S+ +++RGG+PRF S +G +VR++GDEFWHMT+VLRL NDRVELF+G G L+
Sbjct: 59 STSGCSRARGGLPRFHSPSLPSSKGEVVRIQGDEFWHMTRVLRLGVNDRVELFDGAGALV 118
Query: 87 EGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVT 146
EG IQ++D+ G DV LE+ + + PQ QW+VFAAFGTLKGGRADWL+EKCTELGA SVT
Sbjct: 119 EGSIQKVDKNGSDVELLENARSIAPQGIQWHVFAAFGTLKGGRADWLIEKCTELGACSVT 178
Query: 147 PLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQ 206
PLLTE + I +N A V QR+H+M L P++I L +VSQ
Sbjct: 179 PLLTE---RCHTIAENRVDRLQRLV-----LAAVKQCQRVHDMSLKAPIEIRDLPAIVSQ 230
Query: 207 SKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRL 266
SKLAF+A A A P+++ L NE SG++I+GPEGDFT++EVN + AGA VGLGP RL
Sbjct: 231 SKLAFLASAGAPPVLSVLPKPSNEESGVLIIGPEGDFTDEEVNVLKAAGAVPVGLGPCRL 290
Query: 267 RVETATIALLATLMLCSDSQQMPI 290
RVETATI+LL+ LML SD+ I
Sbjct: 291 RVETATISLLSALMLWSDAHHQEI 314
>gi|147845297|emb|CAN83371.1| hypothetical protein VITISV_034944 [Vitis vinifera]
Length = 259
Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 147/224 (65%), Positives = 170/224 (75%), Gaps = 20/224 (8%)
Query: 76 VELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAFG------------ 123
VELFNGKGGL+EG I RIDRTGLD +ALED KLVLPQ ++W+VFAAF
Sbjct: 40 VELFNGKGGLVEGSINRIDRTGLDFIALEDPKLVLPQSSRWHVFAAFDFAITCLQLLLLG 99
Query: 124 TLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGG 183
TLKGGRADWLVEKCTELG SVTPLLTE +S I +N + I +A
Sbjct: 100 TLKGGRADWLVEKCTELGTSSVTPLLTE---RSPSISEN---RVDRLQRVILAAA--KQC 151
Query: 184 QRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDF 243
QRLHEM LNPP ID LLP+V+QSKL+ VA+AEATP+ + L+SSR ES+GL+I+GPEGDF
Sbjct: 152 QRLHEMTLNPPTTIDSLLPIVTQSKLSLVAVAEATPVFSVLTSSRRESTGLMIIGPEGDF 211
Query: 244 TEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSDSQQ 287
TEKE+N + EAGATAVGLGPHRLRVETATIALLATLML SDS++
Sbjct: 212 TEKELNMMREAGATAVGLGPHRLRVETATIALLATLMLWSDSER 255
>gi|116785897|gb|ABK23900.1| unknown [Picea sitchensis]
Length = 301
Score = 257 bits (657), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 132/239 (55%), Positives = 164/239 (68%), Gaps = 14/239 (5%)
Query: 38 NQSRGGIPRFFSQ------GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQ 91
N+ RGG+PRF+S+ IVR+EGDEFWHMTK LRL DRVELFN +GGL+EG +
Sbjct: 51 NKPRGGLPRFYSEVLPAGKDKIVRIEGDEFWHMTKALRLGVQDRVELFNARGGLVEGVVL 110
Query: 92 RIDRTGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE 151
R++R+ D+VALE+ L+ P QW+VFAAFGTLKGGRADWL+EKCTELGA SVTPLLTE
Sbjct: 111 RVERSSADIVALEEPLLLTPTGVQWHVFAAFGTLKGGRADWLIEKCTELGASSVTPLLTE 170
Query: 152 LHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAF 211
+S I N A + QRLH+MV+ P I+ +LP + S ++F
Sbjct: 171 ---RSTLISGNRVERWQRVM-----LAAIKQCQRLHQMVVKTPTGIESILPRIETSSVSF 222
Query: 212 VAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
+A+AEATP+V L + GL+IVGPEGDFT+KEV + EAGA VGLGP RLRVET
Sbjct: 223 LAMAEATPIVEVLPKVDKKDGGLLIVGPEGDFTDKEVRALTEAGAIPVGLGPCRLRVET 281
>gi|222625729|gb|EEE59861.1| hypothetical protein OsJ_12443 [Oryza sativa Japonica Group]
Length = 501
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 126/263 (47%), Positives = 167/263 (63%), Gaps = 25/263 (9%)
Query: 50 QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLV 109
+G VR++GDEFWHMT+VLRL NDRVELF+G GGL+EG IQ++D+ G DV LED +L+
Sbjct: 232 RGEEVRIQGDEFWHMTRVLRLGINDRVELFDGAGGLVEGSIQKVDKGGSDVKLLEDARLI 291
Query: 110 LPQHTQWNVFAAFGTL----KGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIG----D 161
P QW+V+AAFG++ KGG L+E + + + +S K+ +
Sbjct: 292 APDGIQWHVYAAFGSIQKVDKGGSDVKLLEDARLIAPDGIQWHVYAAFGESHKLCALTVN 351
Query: 162 NGFLSCNFYYGFIANSAF-----------------VYGGQRLHEMVLNPPMKIDGLLPLV 204
G L + F+ + A V QR+H M+LNPP++I L P+V
Sbjct: 352 TGSLELVVLHLFLQSDAHTIAENRVDRLQRLVLAAVKQCQRIHGMLLNPPIQIADLQPVV 411
Query: 205 SQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPH 264
SQSKLAFVA AE+ PL++ L S NE SGL+IVGPEGDFTE+EVN + +GA VGLGP
Sbjct: 412 SQSKLAFVASAESPPLLSTLPKSCNEESGLLIVGPEGDFTEEEVNVLKASGAVPVGLGPC 471
Query: 265 RLRVETATIALLATLMLCSDSQQ 287
RLRVETATI+LL+ LML SD+ +
Sbjct: 472 RLRVETATISLLSALMLWSDAHR 494
>gi|79319632|ref|NP_001031165.1| ribosomal RNA small subunit methyltransferase E [Arabidopsis
thaliana]
gi|49660073|gb|AAT68327.1| hypothetical protein At1g50000 [Arabidopsis thaliana]
gi|332194385|gb|AEE32506.1| ribosomal RNA small subunit methyltransferase E [Arabidopsis
thaliana]
Length = 210
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 122/215 (56%), Positives = 144/215 (66%), Gaps = 22/215 (10%)
Query: 1 MQSLAAAVRPRFVQF--LNRPSLKPLSLRAFSSSSS------DYANQSRGGIPRFFS--- 49
M++LAAA RP F L R L S ++F++ SS + NQSRGG+PRFFS
Sbjct: 2 MRALAAASRPLFSDLPSLVRSWLPTSSFKSFATVSSSPPSDLNLRNQSRGGLPRFFSDDL 61
Query: 50 ---QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDL 106
+GG+VRV+G EFWHM KVLRL DRVELFNGKGGL+EGCIQ ID+TG+D +A ED
Sbjct: 62 PSRKGGVVRVQGSEFWHMAKVLRLKQEDRVELFNGKGGLVEGCIQSIDKTGVDFIAQEDQ 121
Query: 107 KLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLS 166
K++LPQ QW VFAAFGTLKGGRADWL+EKCTELGA SVTPLLTE +S I +N
Sbjct: 122 KVILPQGMQWQVFAAFGTLKGGRADWLIEKCTELGASSVTPLLTE---RSPIISENRVDR 178
Query: 167 CNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLL 201
A QRLH+MVLNPP+K LL
Sbjct: 179 LERVSFAAAKQC-----QRLHQMVLNPPIKFGTLL 208
>gi|168008547|ref|XP_001756968.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691839|gb|EDQ78199.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 353
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 131/306 (42%), Positives = 185/306 (60%), Gaps = 28/306 (9%)
Query: 1 MQSLAAAVRPRFVQFLN-----------RPSLKPLSLRAFSSSSSDYANQSRGGIPRFF- 48
+Q L A V+PRF F N + L + + +QSRGG+PRF
Sbjct: 51 IQFLRAVVKPRFCDFRNAEKSAQGGCTIHCTALAKDLHVEAEEGAVVQDQSRGGLPRFHI 110
Query: 49 -----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVAL 103
+G VRV+GDEFWHMT+VLRL+ NDR+ELF+G GGL+EG + ++ + +VVA
Sbjct: 111 SSLPAVKGMTVRVDGDEFWHMTRVLRLNVNDRIELFDGNGGLVEGTLLKVTKNCAEVVAT 170
Query: 104 EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNG 163
+++ W+V AAFG LKGGRADWLVEKCTELGAQ++TPLLT+ +S + +
Sbjct: 171 TARRVLPLTGPNWHVAAAFGNLKGGRADWLVEKCTELGAQTLTPLLTQ---RSASVAEQR 227
Query: 164 FLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTA 223
N + I+ +A QRLH + + P ++ LL V ++ +AF+A A A PL +
Sbjct: 228 ----NDRWNRISMAA-TKQCQRLHALDVREPTQLKHLLAEVKKADVAFLAAAGAPPLAQS 282
Query: 224 LSSSRNES--SGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
L R E GL+++GPEGDFT +E+ +++AGA VGLG RLRVETA IA+L T++L
Sbjct: 283 L-LQRPECLRGGLLLIGPEGDFTPEEIELLIDAGAMPVGLGQLRLRVETAAIAILTTVIL 341
Query: 282 CSDSQQ 287
S+ +
Sbjct: 342 LSEGHR 347
>gi|49660071|gb|AAT68326.1| hypothetical protein At1g50000 [Arabidopsis thaliana]
Length = 168
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 112/174 (64%), Positives = 129/174 (74%), Gaps = 8/174 (4%)
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
QW VFAAFGTLKGGRADWL+EKCTELGA SVTPLLTE +S I +N
Sbjct: 2 QWQVFAAFGTLKGGRADWLIEKCTELGASSVTPLLTE---RSPIISENRVDRLERVSFAA 58
Query: 175 ANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGL 234
A QRLH+MVLNPP+K LL + +SKL VA AEA PL+ A++SS ESSGL
Sbjct: 59 AKQC-----QRLHQMVLNPPIKFGTLLDHILKSKLCLVATAEAKPLLNAVNSSAKESSGL 113
Query: 235 IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSDSQQM 288
+IVGPEGDFT+KEV ++EAG TAVGLGPHRLRVETATIALLATL++ SDSQ+M
Sbjct: 114 LIVGPEGDFTKKEVEMMLEAGGTAVGLGPHRLRVETATIALLATLVMWSDSQEM 167
>gi|302759931|ref|XP_002963388.1| hypothetical protein SELMODRAFT_80724 [Selaginella moellendorffii]
gi|300168656|gb|EFJ35259.1| hypothetical protein SELMODRAFT_80724 [Selaginella moellendorffii]
Length = 258
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 115/254 (45%), Positives = 158/254 (62%), Gaps = 18/254 (7%)
Query: 43 GIPRFF------SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRT 96
+PRF+ S+G V ++G EFWHMTK LRL + RVELFNG+GG++ + + R+
Sbjct: 4 ALPRFYCDSLPTSKGTAVEIDGQEFWHMTKALRLGQDQRVELFNGRGGIVTAAVSAVRRS 63
Query: 97 GLDVVALEDLKLVLP--QHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHL 154
+++VA+EDL + P W++ AAF LKGGRADW+VEKCTELGA+++TPL TE
Sbjct: 64 NVELVAVEDLCTLPPPVDSENWHLVAAFADLKGGRADWMVEKCTELGARTLTPLATE--- 120
Query: 155 QSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVS-QSKLAFVA 213
R G S + +A + QRLH M L + I L VS S ++ +A
Sbjct: 121 --RSTGVCSNRSTRWKRVVLAATKQC---QRLHSMELRESLNISSLKSQVSGSSHVSLLA 175
Query: 214 IAEATPLVTALS-SSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
A AT +V + SS++ G +IVGPEGDFTE+E +V AGA VGLG RLRVETA
Sbjct: 176 TAGATEIVEVFNDSSKDIRGGTLIVGPEGDFTEEEKYDLVAAGAMPVGLGHRRLRVETAA 235
Query: 273 IALLATLMLCSDSQ 286
IA+LAT+M+ S+++
Sbjct: 236 IAMLATVMMVSEAK 249
>gi|356534270|ref|XP_003535680.1| PREDICTED: ribosomal RNA small subunit methyltransferase E-like
[Glycine max]
Length = 197
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 106/179 (59%), Positives = 132/179 (73%), Gaps = 16/179 (8%)
Query: 6 AAVRPRFVQFLNRPSLKPLSLRAFS-SSSSDYANQSRGGIPRFFSQ------GGIVRVEG 58
V PRFV NR L+ L++RA + SSSSD+ +Q+RGG+PRF+S+ G ++RV+
Sbjct: 8 GGVIPRFV---NRSWLRNLTVRAMALSSSSDHGDQTRGGLPRFYSETLPPSKGSVIRVQC 64
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
DEFWHMTKVLRL+TN RV+LFNGKG L+EGCIQ IDRTGLD VAL DL + P +TQ +V
Sbjct: 65 DEFWHMTKVLRLTTNSRVQLFNGKGSLVEGCIQNIDRTGLDFVALNDLISIPPPNTQLHV 124
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE----LHLQSRKIGDN--GFLSCNFYY 171
FA FGTLKGGRADWL+EKCTELGA SVTPLLTE + + +G + G +C F+Y
Sbjct: 125 FAGFGTLKGGRADWLLEKCTELGANSVTPLLTERSPSISWMPQLLGTSFGGIAACIFWY 183
>gi|302785802|ref|XP_002974672.1| hypothetical protein SELMODRAFT_232410 [Selaginella moellendorffii]
gi|300157567|gb|EFJ24192.1| hypothetical protein SELMODRAFT_232410 [Selaginella moellendorffii]
Length = 255
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 114/253 (45%), Positives = 156/253 (61%), Gaps = 19/253 (7%)
Query: 43 GIPRFF------SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRT 96
+PRF+ S+G V ++G EFWHMTKVLRL + RVELFNG+GG++ + + R+
Sbjct: 4 ALPRFYCDSLPTSKGTAVEIDGQEFWHMTKVLRLGQDQRVELFNGRGGIVTAAVSAVRRS 63
Query: 97 GLDVVALEDLKLVLP--QHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHL 154
+++VA+EDL + P W++ AAF LKGGRADW+VEKCTELGA+++TPL TE
Sbjct: 64 NVELVAVEDLCTLPPPVDSENWHLVAAFADLKGGRADWMVEKCTELGARTLTPLATE--- 120
Query: 155 QSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI 214
R G S + +A + QRLH M L + I L V ++
Sbjct: 121 --RSTGVCSNRSTRWKRVVLAATKQC---QRLHSMELRQSLNISSLKSQVLKNNED--TT 173
Query: 215 AEATPLVTALS-SSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
A AT +V + SS++ G +IVGPEGDFT++E +V AGA VGLGP RLRVETA I
Sbjct: 174 AGATEIVEVFNDSSKDIRGGTLIVGPEGDFTDEEKYDLVAAGAMPVGLGPRRLRVETAAI 233
Query: 274 ALLATLMLCSDSQ 286
A+LAT+ML S+++
Sbjct: 234 AMLATVMLVSEAK 246
>gi|145356785|ref|XP_001422606.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582849|gb|ABP00923.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 246
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 138/241 (57%), Gaps = 13/241 (5%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
F++G V + +E H TK LRL DR+E+ +G+G L + +D G V E +
Sbjct: 10 FARGAAVTLSREETRHATKALRLKPGDRLEVCDGRGTLGIARLCAVDGVGATVEVEEMVA 69
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIG-----DN 162
L T W+V +AFG LKGGR DWLVEKC ELGA+++ PLLT +S IG +
Sbjct: 70 DALGSGTAWDVASAFGGLKGGRGDWLVEKCAELGARTLVPLLT---TRSGAIGGGDRDGD 126
Query: 163 GFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS---KLAFVAIAEATP 219
+G +A++A R++ + + PP+ ++ L +++ +L +A A A P
Sbjct: 127 KKRGREGRWGRVAHAASKQ-SLRVYGLQVAPPIGVEALCEEIAKDCGERLTLLAAAGAPP 185
Query: 220 LV-TALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
+ A +S + SG I++GPEGDFT++E+ ++ AGA VGLG RLRVETA I+ LA
Sbjct: 186 IADVARASGLDLRSGRIVIGPEGDFTDEELKAMIAAGARPVGLGSLRLRVETAAISALAA 245
Query: 279 L 279
+
Sbjct: 246 V 246
>gi|413933160|gb|AFW67711.1| hypothetical protein ZEAMMB73_952480 [Zea mays]
Length = 141
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 82/106 (77%), Gaps = 6/106 (5%)
Query: 37 ANQSRGGIPRFF------SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCI 90
A+++RGG+PRF S+G ++R++GDEFWHMT+VLRL ND+VELFNG G L EG I
Sbjct: 36 ASRARGGLPRFHAPSLPSSKGEVIRIQGDEFWHMTRVLRLGVNDKVELFNGVGSLAEGFI 95
Query: 91 QRIDRTGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEK 136
++D+ G V LED +++ PQ QW+VFAAFGTLKGGRADWL+EK
Sbjct: 96 HKVDKGGSGVELLEDARIIAPQGIQWHVFAAFGTLKGGRADWLIEK 141
>gi|255086017|ref|XP_002508975.1| predicted protein [Micromonas sp. RCC299]
gi|226524253|gb|ACO70233.1| predicted protein [Micromonas sp. RCC299]
Length = 207
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 107/186 (57%), Gaps = 19/186 (10%)
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
+W+V A G+LKGGRADWLVEKC+ELGA S+ PLLTE S + +
Sbjct: 28 KWDVAVACGSLKGGRADWLVEKCSELGASSLVPLLTERSGSV-------GGSSEGRWERV 80
Query: 175 ANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPL--VTALSSSR---- 228
A +A R H +V++P + L +V ++ +A + A A PL V +++ SR
Sbjct: 81 AAAAMKQS-LRNHRLVVHPALTTTQLCEMVRRAPVALLCAAGAPPLREVMSMAESRTGDG 139
Query: 229 -----NESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCS 283
+E G++IVGPEGDFT +EV +V AGA VGLGP RLRVETA +A+++ + +
Sbjct: 140 VEAGYSEGGGVLIVGPEGDFTPEEVETLVAAGARPVGLGPLRLRVETAAVAIISCVSMTH 199
Query: 284 DSQQMP 289
Q P
Sbjct: 200 PRTQPP 205
>gi|297794975|ref|XP_002865372.1| hypothetical protein ARALYDRAFT_356649 [Arabidopsis lyrata subsp.
lyrata]
gi|297311207|gb|EFH41631.1| hypothetical protein ARALYDRAFT_356649 [Arabidopsis lyrata subsp.
lyrata]
Length = 139
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/134 (52%), Positives = 85/134 (63%), Gaps = 8/134 (5%)
Query: 124 TLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGG 183
TLKGGRADWL+EKCTELGA SVTPLLTE +S I +N +A
Sbjct: 6 TLKGGRADWLIEKCTELGASSVTPLLTE---RSSIISENRVDRLERVSFAVATQC----- 57
Query: 184 QRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDF 243
QRLH++VLNPP+K LL + +SKL VA AEATPL+ A++SS ESSGL+IVG EG
Sbjct: 58 QRLHQIVLNPPIKFVTLLDHIFKSKLCLVATAEATPLLNAVNSSAKESSGLLIVGSEGVC 117
Query: 244 TEKEVNKIVEAGAT 257
VN +EA T
Sbjct: 118 YNLTVNYEIEANFT 131
>gi|413933159|gb|AFW67710.1| hypothetical protein ZEAMMB73_952480 [Zea mays]
Length = 100
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 61/99 (61%), Positives = 75/99 (75%)
Query: 189 MVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEV 248
M L P++I LLP+VSQSKLAF+A AEA PL + L S E SGL+I+GPEGDFT +EV
Sbjct: 1 MSLKSPIQIRHLLPVVSQSKLAFLASAEAPPLFSVLPESSIEQSGLLIIGPEGDFTAEEV 60
Query: 249 NKIVEAGATAVGLGPHRLRVETATIALLATLMLCSDSQQ 287
+ + AGA VGLGP RLRVETATI+LL+ LML SD++
Sbjct: 61 HSLKSAGAAPVGLGPCRLRVETATISLLSALMLWSDAKH 99
>gi|226533423|ref|NP_001146141.1| uncharacterized protein LOC100279709 [Zea mays]
gi|219885933|gb|ACL53341.1| unknown [Zea mays]
Length = 100
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/99 (60%), Positives = 74/99 (74%)
Query: 189 MVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEV 248
M L P++I LLP+VSQSKLAF+A AEA P + L S E SGL+I+GPEGDFT +EV
Sbjct: 1 MSLKSPIQIRHLLPVVSQSKLAFLASAEAPPFFSVLPESSIEQSGLLIIGPEGDFTAEEV 60
Query: 249 NKIVEAGATAVGLGPHRLRVETATIALLATLMLCSDSQQ 287
+ + AGA VGLGP RLRVETATI+LL+ LML SD++
Sbjct: 61 HSLKSAGAAPVGLGPCRLRVETATISLLSALMLWSDAKH 99
>gi|302830234|ref|XP_002946683.1| hypothetical protein VOLCADRAFT_56392 [Volvox carteri f.
nagariensis]
gi|300267727|gb|EFJ51909.1| hypothetical protein VOLCADRAFT_56392 [Volvox carteri f.
nagariensis]
Length = 187
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/179 (41%), Positives = 96/179 (53%), Gaps = 11/179 (6%)
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNFYY 171
+W V A TLKGGRA+WLVEK TELGA + PL+TE + + R G F
Sbjct: 1 RWVVAVACTTLKGGRAEWLVEKLTELGAFMMIPLVTERSQVGMTGR--GCTAFFPNRISP 58
Query: 172 GFIANSAFVYGGQ--RLHEMVLNPPMKIDGLLPLVSQSK-LAFVAIAEATPLVTALSSSR 228
G + A Q R H + L PP + +LP + +A+A A PL T +
Sbjct: 59 GRLERVAIAATKQSLRPHVLHLAPPTALADVLPDDGGGESFCLIAVAGAPPLATRGCDAA 118
Query: 229 NESSG---LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSD 284
ES G ++ +GPEGDFT E+ +V+AGA VGLG +RLR ETA I LLA +L D
Sbjct: 119 GESEGPLRVLFIGPEGDFTPAELAALVQAGARPVGLGTNRLRTETAAIGLLAACLLTED 177
>gi|303284987|ref|XP_003061784.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457114|gb|EEH54414.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 184
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 95/190 (50%), Gaps = 23/190 (12%)
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
+W V A G LKGGRADWLVEK ELGA S+ P LT +++ G G +
Sbjct: 1 RWEVAVACGGLKGGRADWLVEKLAELGAASLAPTLTARSAVTKR-GREG----RWVRVAA 55
Query: 175 ANSAFVYGGQRLHEMVLNPPMKIDGLLPLV---------------SQSKLAFVAIAEATP 219
A S R H +V+ P D LL V + L + +
Sbjct: 56 AASKQCL---RTHALVVESPCAFDALLRRVRDAPIALLAAAGAPPLRDALRDADVDDGDD 112
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
TA R + GL+IVGPEGDFTE E+ +++AGAT VGLGP RLRVETA +AL+A +
Sbjct: 113 GETASGPGRGATGGLLIVGPEGDFTEDELGALIDAGATPVGLGPLRLRVETAAVALMACV 172
Query: 280 MLCSDSQQMP 289
+ + P
Sbjct: 173 GMMHPRKPPP 182
>gi|308811582|ref|XP_003083099.1| unnamed protein product [Ostreococcus tauri]
gi|116054977|emb|CAL57054.1| unnamed protein product [Ostreococcus tauri]
Length = 317
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 14/230 (6%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRI--DRTGLDVVALEDLKLVLP 111
R+ +E H K LRL VE+ +G G L + + R +DV +
Sbjct: 59 TRLSREETRHAAKALRLRPGVAVEVCDGVGRLARATLGDVLDGRFVVDVEDVRVDVDGRS 118
Query: 112 QHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNF-- 169
W+V AF LKGGR DWLVEKC ELGA+ + PLL + G++G
Sbjct: 119 SGIDWDVVCAFAGLKGGRGDWLVEKCAELGARRLVPLLASRSERRSTRGEDGEGDARRGR 178
Query: 170 --YYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQ-----SKLAFVAIAEATPL-- 220
+ +A +A R E+ + ++ L +++ +++ +A+ P+
Sbjct: 179 AGRWDRVARAASKQS-LRARELAVGETTDVEALCREMAREREVGTRVTLLALQGGAPVAD 237
Query: 221 VTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
V R +G ++VGPEGDFT++EV ++ AGA +GLG RLRVET
Sbjct: 238 VAREVGPRAMRAGRVVVGPEGDFTDEEVRAMIRAGARPIGLGTLRLRVET 287
>gi|307730990|ref|YP_003908214.1| hypothetical protein [Burkholderia sp. CCGE1003]
gi|307585525|gb|ADN58923.1| protein of unknown function DUF558 [Burkholderia sp. CCGE1003]
Length = 246
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 122/247 (49%), Gaps = 19/247 (7%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF S G++++ D H+ VLRL D + LFNG+GG + I+R +
Sbjct: 1 MPRFFVGTSLSPDGVLQLPDDVVRHVL-VLRLQVGDSIVLFNGEGGEYSAELVTIERRAI 59
Query: 99 DVVALE--DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
V E D+++ P + + A G G + DWL+EK ELGA S PL T +
Sbjct: 60 TVKVREFRDIEVEPP----YRLSLAQGIASGDKMDWLIEKAVELGASSFVPLTTTRSV-V 114
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKID---GLLP-LVSQSKLAFV 212
R G+ + G + S G RL E++ P +I G +P L + +L +
Sbjct: 115 RLAGERALRRHTHWEGIVRASCEQCGRNRLPEVM--PVREIATWLGAMPRLPAADELRIL 172
Query: 213 AIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
A+ +AL ++ + ++VGPEG F+ E ++ G AVGLGP LR ETA
Sbjct: 173 LSPRASIQFSALPTTAPKGPVTVLVGPEGGFSAAEEAAAMDHGFQAVGLGPRVLRTETAG 232
Query: 273 IALLATL 279
IA+L+ L
Sbjct: 233 IAVLSAL 239
>gi|323527358|ref|YP_004229511.1| hypothetical protein BC1001_3037 [Burkholderia sp. CCGE1001]
gi|323384360|gb|ADX56451.1| protein of unknown function DUF558 [Burkholderia sp. CCGE1001]
Length = 246
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 122/247 (49%), Gaps = 19/247 (7%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF S IV++ D H+ VLRL T D + LFNG+GG + I+R +
Sbjct: 1 MPRFFVGTPLSPDDIVQLPDDVVRHVL-VLRLQTGDSIVLFNGEGGEYSAELVAIERRAV 59
Query: 99 DVVALE--DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
V E D+++ P + + A G G + DWL+EK ELGA S PL T +
Sbjct: 60 TVKIREFRDIEVEPP----YRLTLAQGIASGDKMDWLIEKAVELGASSFVPLTTTRSV-V 114
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKID---GLLPLV-SQSKLAFV 212
R G+ + G + S G RL E++ P +I G +P V + +L +
Sbjct: 115 RLSGERALRRHAHWEGIVRASCEQCGRNRLPEVM--PVREIATWLGAMPRVPAGDELRIL 172
Query: 213 AIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
A+ +AL +S + ++VGPEG F+ E ++ G AVGLGP LR ETA
Sbjct: 173 LSPRASIHFSALPASPPKGPVTVLVGPEGGFSAAEEAAAMDHGFQAVGLGPRVLRTETAG 232
Query: 273 IALLATL 279
IA+L+ L
Sbjct: 233 IAVLSAL 239
>gi|407714752|ref|YP_006835317.1| ribosomal RNA small subunit methyltransferase E [Burkholderia
phenoliruptrix BR3459a]
gi|407236936|gb|AFT87135.1| Ribosomal RNA small subunit methyltransferase E [Burkholderia
phenoliruptrix BR3459a]
Length = 251
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 121/247 (48%), Gaps = 19/247 (7%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF S IV++ D H+ VLRL T D + LFNG+GG + I+R +
Sbjct: 6 MPRFFVGTPLSPDDIVQLPDDVVRHVL-VLRLQTGDSIVLFNGEGGEYSAELVAIERRAV 64
Query: 99 DVVALE--DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
V E D+++ P + + A G G + DWL+EK ELGA S PL T +
Sbjct: 65 TVKIREFRDIEVEPP----YRLTLAQGIASGDKMDWLIEKAVELGAASFVPLTTTRSV-V 119
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKID---GLLPLVS-QSKLAFV 212
R G+ + G + S G RL E++ P +I G +P V +L +
Sbjct: 120 RLSGERALRRHAHWEGIVRASCEQCGRNRLPEVM--PVREIATWLGAMPRVPVGDELRIL 177
Query: 213 AIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
A+ +AL +S + ++VGPEG F+ E ++ G AVGLGP LR ETA
Sbjct: 178 LSPRASIHFSALPASPPKGPVTVLVGPEGGFSAAEEAAAMDHGFQAVGLGPRVLRTETAG 237
Query: 273 IALLATL 279
IA+L+ L
Sbjct: 238 IAVLSAL 244
>gi|307109508|gb|EFN57746.1| hypothetical protein CHLNCDRAFT_143017 [Chlorella variabilis]
Length = 158
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 65/115 (56%), Gaps = 8/115 (6%)
Query: 45 PRFF--------SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRT 96
PRF+ + G ++R+ +E H K LRL DR+EL +G G + + +DR
Sbjct: 10 PRFYIPARLADAAPGAVLRLPAEESRHAAKTLRLRQGDRIELCDGSGFVALAEMGGVDRA 69
Query: 97 GLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE 151
G L+ +LV QW V A G+LKGGR+DWLVEKC ELGA + TPLLT
Sbjct: 70 GAVAQVLDAAQLVPAVGWQWRVACACGSLKGGRSDWLVEKCAELGAAAFTPLLTH 124
>gi|384247313|gb|EIE20800.1| alpha/beta knot [Coccomyxa subellipsoidea C-169]
Length = 205
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 111/220 (50%), Gaps = 25/220 (11%)
Query: 67 VLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVV-ALEDLKLVLPQHTQWNVFAAFGTL 125
VLRL ++E+ +G GGL ++ I V +E+ + V Q +W V AA +L
Sbjct: 3 VLRLREGAKLEVCDGNGGLALAELRGIAHNNKAYVETMENRRQVEWQGPKWEVVAACFSL 62
Query: 126 KGGRADWLVEKCTELGAQSVTPLLT--ELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGG 183
KGGRADWLVEKCTE+GA + P+L+ HL +++ + A +
Sbjct: 63 KGGRADWLVEKCTEMGAWGLRPILSVRSPHLGRKQV--------------VIEVATIDED 108
Query: 184 QRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDF 243
+ P + Q + VA A A +S + GL+++GPEGDF
Sbjct: 109 SEEELEDVETPNQ-------SRQKRWHRVAQA-AVKQCLRQASLPDAKPGLLLIGPEGDF 160
Query: 244 TEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCS 283
T +E+ ++ AGA VGLGP+ LRVETA +A+LA LC
Sbjct: 161 TPEELEALIAAGAKPVGLGPNWLRVETAALAMLAAATLCD 200
>gi|170695362|ref|ZP_02886508.1| protein of unknown function DUF558 [Burkholderia graminis C4D1M]
gi|170139762|gb|EDT07944.1| protein of unknown function DUF558 [Burkholderia graminis C4D1M]
Length = 246
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 119/247 (48%), Gaps = 19/247 (7%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF S IV++ D H+ VLRL D + LFNG+GG + I+R +
Sbjct: 1 MPRFFVGTSLSPDDIVQLPDDVVRHVL-VLRLQVGDSIVLFNGEGGEYSAELAAIERRAV 59
Query: 99 DVVALE--DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
V E D+++ T + + A G G + DWL+EK ELGA S PL T +
Sbjct: 60 TVKIREFRDIEV----ETPYRLTLAQGIASGDKMDWLIEKAVELGASSFVPLTTTRSV-V 114
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQ----SKLAFV 212
R G+ + G + S G RL E++ P +I L + + +L +
Sbjct: 115 RLAGERAARRHAHWEGIVRASCEQCGRNRLPEVM--PVREIATWLSAMPRVPAGDELRIL 172
Query: 213 AIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
A+ +AL ++ + ++VGPEG F+ E ++ G AVGLGP LR ETA
Sbjct: 173 LSPRASIPFSALPAAPPKGPVTVLVGPEGGFSAAEEAAAMDHGFQAVGLGPRVLRTETAG 232
Query: 273 IALLATL 279
+A+L+ L
Sbjct: 233 MAVLSAL 239
>gi|225010758|ref|ZP_03701227.1| protein of unknown function DUF558 [Flavobacteria bacterium
MS024-3C]
gi|225005129|gb|EEG43082.1| protein of unknown function DUF558 [Flavobacteria bacterium
MS024-3C]
Length = 237
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 124/245 (50%), Gaps = 17/245 (6%)
Query: 45 PRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV-VAL 103
P F ++ V + +E H TKVLR T D + L NGKG + +G I D G V V+L
Sbjct: 7 PCFTAEDNSVALSQEESKHATKVLRKKTGDLIHLTNGKGLMAQGEIS--DTAGKTVQVSL 64
Query: 104 EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNG 163
++ L P+ +++ A T R +W +EK TE+G S+TP++ + RK+
Sbjct: 65 IEIHLQTPKPYSLDLYVA-PTKMNDRYEWFLEKATEIGLSSITPIICDQ--SERKV---- 117
Query: 164 FLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPL-VSQSKLAFVAIAEATPLVT 222
+ Y + ++ + + + +L+P + + L +S KL A EA + T
Sbjct: 118 -IKAERYEKVLLSA--MKQSLQAYLPLLHPAISLKKCLDQDISGEKL--FAHCEADKMKT 172
Query: 223 ALSSSRNESSGL-IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
AL+S ++ L I +GPEGDF+ E+ K +E G V G RLR ETA + A++
Sbjct: 173 ALNSLDLKNKKLSIFIGPEGDFSLSEIKKAIEKGCKPVSFGNTRLRTETAALYACASVAA 232
Query: 282 CSDSQ 286
++S+
Sbjct: 233 QNESE 237
>gi|404498235|ref|YP_006722341.1| 16S ribosomal RNA methyltransferase RsmE [Geobacter metallireducens
GS-15]
gi|418065967|ref|ZP_12703336.1| protein of unknown function DUF558 [Geobacter metallireducens RCH3]
gi|78195832|gb|ABB33599.1| 16S rRNA (3-methyl-U1498)-methyltransferase [Geobacter
metallireducens GS-15]
gi|373561474|gb|EHP87709.1| protein of unknown function DUF558 [Geobacter metallireducens RCH3]
Length = 263
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 112/256 (43%), Gaps = 16/256 (6%)
Query: 24 LSLRAFSSSSSDYANQSRGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKG 83
+S+R F + +D A +S VR+EGD F HM KVLRL + RV L +G G
Sbjct: 1 MSVRRFMAPGADLAGES-------------VRIEGDLFRHMVKVLRLKIDTRVRLADGHG 47
Query: 84 GLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQ 143
G IQ I R L VA+E+ V P + G KG + + +++K TELG
Sbjct: 48 VECAGIIQEIGRDHL-TVAVEERHAVAPVGGSLRITLIQGLPKGEKMELILQKGTELGVN 106
Query: 144 SVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPL 203
V P + + SR D + A +A G + + L M + +
Sbjct: 107 EVVPFQADRSV-SRIPADRQDERLRRWQRIAAEAARQAGRLDIPTVQLAQGMD-EAVRDT 164
Query: 204 VSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGP 263
KL AT L A++ +S +IVGPEG T +E G V LG
Sbjct: 165 DHDLKLLLWEEERATTLQGAINVRPRPASIAVIVGPEGGLTREEAETARRTGFIPVTLGR 224
Query: 264 HRLRVETATIALLATL 279
LR ETA IALLA L
Sbjct: 225 RILRTETAGIALLAIL 240
>gi|326335942|ref|ZP_08202119.1| RsmE family RNA methyltransferase [Capnocytophaga sp. oral taxon
338 str. F0234]
gi|325691906|gb|EGD33868.1| RsmE family RNA methyltransferase [Capnocytophaga sp. oral taxon
338 str. F0234]
Length = 268
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 110/230 (47%), Gaps = 16/230 (6%)
Query: 50 QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLV 109
+ ++ ++ +E H+ +VLR D + + +G+G L EG IQ I+ +V ++ L
Sbjct: 37 ESNLILLDKEESTHIHRVLRRKIGDLLYITDGRGNLYEGVIQDINDKKCSIV-IQSCTLT 95
Query: 110 LPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNF 169
P Q ++ A T R +W +EK TE+G +TP++ E H + + + F
Sbjct: 96 PPLPYQLHLAVA-PTKMNERYEWFLEKATEIGVHEITPIICE-HSERKTVKIERFEK--- 150
Query: 170 YYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP---LVTALSS 226
I SA Q +LN P+ + L K F+A + L LS+
Sbjct: 151 ----IILSAMKQSLQCFRP-ILNKPINMLNWLDNNIHEKNRFIAHCQEGKKELLFDKLST 205
Query: 227 S--RNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274
S N LII+GPEGDF+EKE+ K ++ + V L +RLR ETA I
Sbjct: 206 SYHNNIRDILIIIGPEGDFSEKEIQKAIQKNFSPVILSSNRLRTETAAIV 255
>gi|90415442|ref|ZP_01223376.1| hypothetical protein GB2207_09001 [gamma proteobacterium HTCC2207]
gi|90332765|gb|EAS47935.1| hypothetical protein GB2207_09001 [marine gamma proteobacterium
HTCC2207]
Length = 245
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 118/248 (47%), Gaps = 25/248 (10%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
IPR F S G + + G H++ LR+S + LFNG GG + R ++ +
Sbjct: 3 IPRIFTDQPLSSGANLALSGSAARHLSSALRMSAGQEITLFNGLGGEFSATLTRATKSQV 62
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
DV ++ D + + + + N+ A +G R DW+V+K TELG +TPL +E +
Sbjct: 63 DV-SIGDFRDI-DRESPLNLHLAIAVSRGERMDWIVQKATELGVSEITPLFSE----RTE 116
Query: 159 IGDNG-FLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA 217
+ NG L + + + QR +NP + +D L SQ AE
Sbjct: 117 VKLNGERLEKKLRHWQQVSISACEQCQRNLVPSINPALTLDQWL---SQD----TGNAEQ 169
Query: 218 TPLV------TALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA 271
LV +L+ + S ++VGPEG ++ E+++ ++ G A+ LGP +R ETA
Sbjct: 170 LKLVLHHRSDKSLAQHQPPKSACLLVGPEGGLSDNEISRAMDNGFAALTLGPRVMRTETA 229
Query: 272 TIALLATL 279
+A ++ +
Sbjct: 230 PLAAISIM 237
>gi|325105650|ref|YP_004275304.1| hypothetical protein [Pedobacter saltans DSM 12145]
gi|324974498|gb|ADY53482.1| protein of unknown function DUF558 [Pedobacter saltans DSM 12145]
Length = 236
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 101/221 (45%), Gaps = 22/221 (9%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCI--QRIDRTGLDVVALE-DLKLVLPQHTQ 115
+E H +KVLRL DR+ L +G GG G I RT L +V+ E D V
Sbjct: 21 EESRHCSKVLRLKIGDRIHLVDGIGGFYLGEIIEDHPKRTKLTIVSKEKDFNKV-----A 75
Query: 116 WNVFAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
+++ A K R +W +EK TE+G Q VTP++ E H + + + I
Sbjct: 76 FHLHIAIAPTKNIDRIEWFLEKATEIGIQEVTPVICE-HSERKDVKTERLEK-------I 127
Query: 175 ANSAFVYGGQRLHEMV--LNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESS 232
SA Q L + LN P L+ V ++A T S + E
Sbjct: 128 MVSAM---KQSLKAYLPKLNKPQTFKSLISSVGSDVHKYIAHCIPTEKREIADSFKREEK 184
Query: 233 GLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
LI++GPEGDF+EKEV +E G + LG RLR ETA +
Sbjct: 185 YLILIGPEGDFSEKEVQIALENGFVPITLGKSRLRTETAAL 225
>gi|254515811|ref|ZP_05127871.1| PAS/PAC sensor signal transduction histidine kinase [gamma
proteobacterium NOR5-3]
gi|219675533|gb|EED31899.1| PAS/PAC sensor signal transduction histidine kinase [gamma
proteobacterium NOR5-3]
Length = 245
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 113/244 (46%), Gaps = 24/244 (9%)
Query: 45 PRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PRFF S+G + +E + H+ K LR+ D + LFNG G G I ID+ +
Sbjct: 4 PRFFTAQALSEGASIVLEKEPSRHIAKALRMRVEDTLCLFNGNGVEARGLITAIDKDRVS 63
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQS 156
V +L DL P+ + + +G R D +V+K TELG + P+++E + L
Sbjct: 64 V-SLHDLSEP-PRESPLDTVLIIALSRGDRMDTVVQKATELGVSEIWPMISERTGVRLDG 121
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS---KLAFVA 213
++ ++G +A SA G+ ++ P + L Q +L
Sbjct: 122 ERLSKK-----QEHWGRVAISACEQCGRNRLPLIAAPVSYAETLSRAAQQDASLRLVLHP 176
Query: 214 IAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
+ A PL S +++VGPEG +++EV +AG TA LGP LR ETA +
Sbjct: 177 LGNAEPLPEQCRSL------IMLVGPEGGLSDQEVAGACDAGFTAFQLGPRILRTETAPL 230
Query: 274 ALLA 277
A LA
Sbjct: 231 AGLA 234
>gi|118444754|ref|YP_878563.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium novyi NT]
gi|118135210|gb|ABK62254.1| conserved hypothetical protein TIGR00046 [Clostridium novyi NT]
Length = 251
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 118/249 (47%), Gaps = 27/249 (10%)
Query: 47 FFSQGGIVR----VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVA 102
F S+ I+ +EG++ H+ KVLRL D+V + + G G I ID++ ++V
Sbjct: 5 FVSENNILSDIAVIEGEDVKHIYKVLRLKEGDKVNINDCNGKEFLGTIDYIDKSKVEVKL 64
Query: 103 LEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLT--------ELHL 154
LE+L++ V+ G K + D +V+KCTELG + +TP++T ++
Sbjct: 65 LEELEI--NNEPPIEVYLYQGLPKASKMDLIVQKCTELGIREITPVVTGRVASSINDIKR 122
Query: 155 QSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI 214
+S+K+ + IA A + L V N M +D L + + L V
Sbjct: 123 ESKKLD---------RWNRIAFEACKQNKRTLIPKV-NDIMNMDELKEQLKEMDLIVVPY 172
Query: 215 --AEATPLVTALSSSRNESSGL-IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA 271
AE + + + E + II+GPEG F ++E+ ++ A V LGP LR ETA
Sbjct: 173 ENAENYGIKQMIKNVTGEVKKVGIIIGPEGGFEQEEIEELKNMEAQIVTLGPRILRTETA 232
Query: 272 TIALLATLM 280
LA LM
Sbjct: 233 GFTCLALLM 241
>gi|186477349|ref|YP_001858819.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia phymatum
STM815]
gi|184193808|gb|ACC71773.1| protein of unknown function DUF558 [Burkholderia phymatum STM815]
Length = 251
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 113/255 (44%), Gaps = 35/255 (13%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTG- 97
+PRFF IV + DE +VLRL D V LFNG GG I +DR G
Sbjct: 6 MPRFFVGTPFKTDDIVSLP-DEVNRHVRVLRLQPGDTVSLFNGDGGEYGAEIVDMDRHGT 64
Query: 98 -LDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
+ +V D++ P + + A G + DWL+EK TELGA PL T +
Sbjct: 65 IVRIVGFRDIECEPP----YRLTLAQGIAGSDKMDWLIEKATELGACEFVPLTTTRSV-V 119
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLN----------PPMKIDGLLPLV-- 204
R G+ + + S G RL +++ P +DG L L+
Sbjct: 120 RLAGERAQRRQVHWQRIVQASCEQCGRNRLPQVMPTRELATWLSTMPKEPVDGELRLLLS 179
Query: 205 SQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPH 264
++ + F A+ P V AL ++VGPEG F+ E G TAVGLGP
Sbjct: 180 PRASVPFSALPVEPPKVRAL----------VLVGPEGGFSAAEEAAAAAHGFTAVGLGPR 229
Query: 265 RLRVETATIALLATL 279
LR ETA IA+L+ L
Sbjct: 230 VLRTETAGIAVLSAL 244
>gi|149176993|ref|ZP_01855602.1| hypothetical protein PM8797T_07227 [Planctomyces maris DSM 8797]
gi|148844248|gb|EDL58602.1| hypothetical protein PM8797T_07227 [Planctomyces maris DSM 8797]
Length = 242
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 106/245 (43%), Gaps = 14/245 (5%)
Query: 46 RFFSQGGI----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVV 101
RFF G + ++G E H+ VLR+ D V +FNG G EG I + R ++V
Sbjct: 4 RFFYDGSFDVDQLLLDGSEAHHLLHVLRMQAGDTVLVFNGTGAEAEGVISKTSRKTVEVQ 63
Query: 102 ALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGD 161
+ +Q + A KG R WLVEK ELG + PLLT R D
Sbjct: 64 VTA--RHAAQAKSQTPLILATAVPKGDRFRWLVEKAAELGVTKLVPLLTR-----RSSVD 116
Query: 162 NGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLV 221
G I ++A G +L M L D L +SQ++ + A V
Sbjct: 117 PGQNRLKKLQQTIVSAAKQSGQIQL--MELTEVQNWDEFLSEISQTESRLLIADPAGSGV 174
Query: 222 TAL-SSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
S + ES +I++GPEG FT E+ +E GA +V L LR+ETA I +
Sbjct: 175 DFFRSGEKRESPVVILIGPEGGFTPDELQSALEKGAKSVRLSEGILRIETAAILFAGLIR 234
Query: 281 LCSDS 285
L S
Sbjct: 235 LTEPS 239
>gi|407801891|ref|ZP_11148734.1| hypothetical protein S7S_00967 [Alcanivorax sp. W11-5]
gi|407024208|gb|EKE35952.1| hypothetical protein S7S_00967 [Alcanivorax sp. W11-5]
Length = 237
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 108/233 (46%), Gaps = 16/233 (6%)
Query: 45 PRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVA-- 102
P+ FSQG + D H+ +VLR+ +R+++FNG+GG E I I + + V+
Sbjct: 7 PQPFSQGQQTVLGEDASHHIARVLRMQVGERLQVFNGQGGAWEAEITAISKKAVTVLTQG 66
Query: 103 --LEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIG 160
ED LP V A +KG R D+ ++K TELGA LLT R G
Sbjct: 67 FDAEDRTAPLP------VTVALPMIKGERMDYALQKATELGAHRFQ-LLTTERTDVRLDG 119
Query: 161 DNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPL 220
D + + ++ G R+ ++ P+ + LP + + L +A PL
Sbjct: 120 DRQDKKLRHWQQVVVSACEQCGMNRV--PTVHAPLPLTAWLP-TADTALKLIAHPGEAPL 176
Query: 221 VTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
A ++ R S +++ GPEG F++ E+ + G A LG LR ETA +
Sbjct: 177 --ADTTLRQADSMVLLTGPEGGFSDAELYSAADHGFVAFALGNRVLRAETAPV 227
>gi|91785218|ref|YP_560424.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia xenovorans
LB400]
gi|91689172|gb|ABE32372.1| Conserved hypothetical protein 46 [Burkholderia xenovorans LB400]
Length = 251
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 116/247 (46%), Gaps = 19/247 (7%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF I+++ D H+ VLRL D + LFNG+GG + ++R
Sbjct: 6 MPRFFVGTPLQSDDIMQLPDDVVRHVL-VLRLQPGDSIVLFNGEGGEYSAELVEVERRSA 64
Query: 99 DVVALE--DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
V E ++++ P + + A G G + DWL+EK ELGA + PL T +
Sbjct: 65 KVRIREFRNIEVEAP----YRLTLAQGIAGGDKMDWLIEKAVELGASAFVPLTTTRSV-V 119
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKID---GLLPLV-SQSKLAFV 212
R G+ + G + S G RL E++ P +I G +P + L +
Sbjct: 120 RLTGERAQRRHAHWQGIVRASCEQCGRNRLPEVM--PVREIATWLGAMPRTPEEGDLRIL 177
Query: 213 AIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
A+ +AL + + ++VGPEG F+ E + G TAVGLGP +R ETA
Sbjct: 178 LSPRASISFSALPAEPPQGRVTVLVGPEGGFSAAEEAAATDHGFTAVGLGPRVMRTETAG 237
Query: 273 IALLATL 279
IA+L+ L
Sbjct: 238 IAVLSAL 244
>gi|385208042|ref|ZP_10034910.1| RNA methyltransferase, RsmE family [Burkholderia sp. Ch1-1]
gi|385180380|gb|EIF29656.1| RNA methyltransferase, RsmE family [Burkholderia sp. Ch1-1]
Length = 246
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 116/247 (46%), Gaps = 19/247 (7%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF I+++ D H+ VLRL D + LFNG+GG + ++R
Sbjct: 1 MPRFFVGTPLQSDDIMQLPDDVVRHVL-VLRLQPGDSIVLFNGEGGEYSAELVEVERRSA 59
Query: 99 DVVALE--DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
V E ++++ P + + A G G + DWL+EK ELGA + PL T +
Sbjct: 60 KVRIREFRNIEVEAP----YRLTLAQGIAGGDKMDWLIEKAVELGASAFVPLTTTRSV-V 114
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKID---GLLPLV-SQSKLAFV 212
R G+ + G + S G RL E++ P +I G +P + L +
Sbjct: 115 RLSGERAQRRHAHWQGIVRASCEQCGRNRLPEVM--PVREIATWLGAMPRTPEEGDLRIL 172
Query: 213 AIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
A+ +AL + + ++VGPEG F+ E + G TAVGLGP +R ETA
Sbjct: 173 LSPRASISFSALPAEPPQGRVTVLVGPEGGFSAAEEAAATDHGFTAVGLGPRVMRTETAG 232
Query: 273 IALLATL 279
IA+L+ L
Sbjct: 233 IAVLSAL 239
>gi|390576391|ref|ZP_10256461.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia terrae
BS001]
gi|420252870|ref|ZP_14755949.1| RNA methyltransferase, RsmE family [Burkholderia sp. BT03]
gi|389931730|gb|EIM93788.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia terrae
BS001]
gi|398053185|gb|EJL45389.1| RNA methyltransferase, RsmE family [Burkholderia sp. BT03]
Length = 246
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 111/255 (43%), Gaps = 35/255 (13%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTG- 97
+PRFF IV + DE +VLRL D V LFNG GG I +DR G
Sbjct: 1 MPRFFVGTPFKTDDIVSLP-DEVNRHVRVLRLQPGDTVSLFNGTGGEYGAEIVDMDRHGT 59
Query: 98 -LDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
+ + D++ P + + A G + DWL+EK TELGA PL T +
Sbjct: 60 IVRIGPFRDVEAEPP----YQLTLAQGIAGSDKMDWLIEKATELGASEFVPLTTTRSV-V 114
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLN----------PPMKIDGLLPLV-- 204
R G+ + + S G RL E++ P DG L L+
Sbjct: 115 RLSGERAQRRQVHWQRIVQASCEQCGRNRLPEVMPTRELATWLSSMPKQPADGELRLLLS 174
Query: 205 SQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPH 264
++ + F A+ P V AL ++VGPEG F+ E G T+VGLGP
Sbjct: 175 PRASVPFSALPSEPPTVRAL----------VLVGPEGGFSAAEEAAAAGHGFTSVGLGPR 224
Query: 265 RLRVETATIALLATL 279
LR ETA IA+L+ L
Sbjct: 225 VLRTETAGIAVLSAL 239
>gi|302877374|ref|YP_003845938.1| hypothetical protein Galf_0129 [Gallionella capsiferriformans ES-2]
gi|302580163|gb|ADL54174.1| protein of unknown function DUF558 [Gallionella capsiferriformans
ES-2]
Length = 243
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 115/242 (47%), Gaps = 13/242 (5%)
Query: 44 IPRFFS-----QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRF+ G + D H ++VLRL D V+LF+G G G I D TG
Sbjct: 1 MPRFYCPPPIPAQGAFNLPADAAHHASRVLRLREGDSVQLFDGTGHEYHGAI--TDMTGK 58
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
VV + + + + + + A + DW+++K TELGA + PL T + K
Sbjct: 59 QVVVGDIVHIEADRESPLQIVLAQALCSSEKMDWVIQKATELGATEIQPLATGRSVA--K 116
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLA-FVAIAEA 217
+ + ++ +A SA G+ + V++PP++I L + S ++ ++ + +
Sbjct: 117 LSADRAAKRTEHWQQVAISACEQCGRNVLP-VIHPPVEIGTWLQHMLDSDMSKYILLPQG 175
Query: 218 TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
+ + +S ++++G EG FTE E + + G T V LG +R ETA +A LA
Sbjct: 176 AKSLQ--EQEKPQSGAVLLIGAEGGFTEAESDNALRCGFTPVRLGARVMRTETAAVAGLA 233
Query: 278 TL 279
L
Sbjct: 234 VL 235
>gi|300770808|ref|ZP_07080686.1| RsmE family RNA methyltransferase [Sphingobacterium spiritivorum
ATCC 33861]
gi|300762365|gb|EFK59183.1| RsmE family RNA methyltransferase [Sphingobacterium spiritivorum
ATCC 33861]
Length = 237
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 110/227 (48%), Gaps = 33/227 (14%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRID----RTGLDVVALEDLKLVLPQHT 114
+E H +VLRL+ D++ L +G+GG I ID RT L ++ +++ Q
Sbjct: 21 EESKHAIRVLRLANRDQIHLIDGRGGFYRAEI--IDAHPKRTTLQIIEIQEAF----QKP 74
Query: 115 QWNVFAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGF 173
+++ A K R +W +EK TE+G Q +TP+++E H + +++ +
Sbjct: 75 SYHLHMAVAPTKNIERFEWFLEKATEVGVQEITPVISE-HSERKEVKPDRL--------- 124
Query: 174 IANSAFVYGGQRLHEMV---LNPPMKIDGLLP----LVSQSKLAFVAIAEATPLVTALSS 226
N V ++ ++ LNP M + L + +Q +A +E L +
Sbjct: 125 --NKVIVAAMKQSYKAYMPKLNPAMTLTNFLKQQEQVSAQKAIAHCVDSEKQYLSQVFTP 182
Query: 227 SRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
++ +I++GPEGDF+ +E+ K + +G + LG RLR ETA +
Sbjct: 183 QQD---YVILIGPEGDFSTEEIGKTISSGFVPISLGEARLRTETAAL 226
>gi|88859066|ref|ZP_01133707.1| putative RNA methyltransferase with a deep trefoil knot
[Pseudoalteromonas tunicata D2]
gi|88819292|gb|EAR29106.1| putative RNA methyltransferase with a deep trefoil knot
[Pseudoalteromonas tunicata D2]
Length = 243
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 116/235 (49%), Gaps = 16/235 (6%)
Query: 51 GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVV--ALEDLKL 108
G I++++ D H+ +VLR+S D+V LFNG+GG + + + G++V + E+ +
Sbjct: 15 GQILQLDDDAAGHIGRVLRMSIGDKVCLFNGQGGQFLAELTEVSKKGVNVQIESFEEHDV 74
Query: 109 VLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCN 168
P + G +G + D+ ++K ELG +TPL TE K+ + +
Sbjct: 75 ESP----LKIHLGQGISRGDKMDFTIQKSVELGVTEITPLFTER--CGVKLSGDRLEKKH 128
Query: 169 FYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS-KLAFVAIAEATPLVTALSSS 227
+ IA +A G+ V++PP+K++ L S KL AE + + +
Sbjct: 129 QQWQKIAIAAAEQSGRNF-VTVIHPPIKLEQWLSQQSDELKLTLHPRAEHS-----IKTI 182
Query: 228 RNESSGL-IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
+ GL IVGPEG FT+ E+ +G + LGP LR ETA + +L+ L L
Sbjct: 183 TKPTEGLRFIVGPEGGFTDAEMLMTKNSGFIDIRLGPRILRTETAALTVLSALQL 237
>gi|187716561|gb|ACD17785.1| protein of unknown function DUF558 [Burkholderia phytofirmans PsJN]
Length = 246
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 112/246 (45%), Gaps = 17/246 (6%)
Query: 44 IPRFFS----QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTG-- 97
+PRFF Q V D+ VLRL D + LFNG+GG + ++R
Sbjct: 1 MPRFFVGTPLQPEDVLPLPDDVVRHVLVLRLQPGDSIVLFNGEGGEYSAELVEVERRSAM 60
Query: 98 LDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
+ + D+++ P + + A G G + DWL+EK ELGA S PL T + R
Sbjct: 61 VKIREFRDIEVEAP----YRLTLAQGIAGGDKMDWLIEKAVELGASSFVPLTTTRSV-VR 115
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKID---GLLPLV-SQSKLAFVA 213
GD + G + S G RL E++ P +I G +P + L +
Sbjct: 116 LSGDRAQRRHAHWQGIVRASCEQCGRNRLPEVM--PVREIATWLGSMPRTPEEGDLRILL 173
Query: 214 IAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
A+ +AL S + ++VGPEG F+ E G TAVGLGP +R ETA I
Sbjct: 174 SPRASISFSALPSEPPKGRVTVLVGPEGGFSATEEAAAAAHGFTAVGLGPRVMRTETAGI 233
Query: 274 ALLATL 279
A+L+ L
Sbjct: 234 AVLSAL 239
>gi|312795128|ref|YP_004028050.1| surface protein [Burkholderia rhizoxinica HKI 454]
gi|312166903|emb|CBW73906.1| surface protein [Burkholderia rhizoxinica HKI 454]
Length = 271
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 109/245 (44%), Gaps = 17/245 (6%)
Query: 45 PRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PRFF G + + D HM VLRL D+ LFNG+GG + + ++D+
Sbjct: 27 PRFFVPMPLHSGHSMPLPDDVVRHM-HVLRLQAGDKAILFNGEGGQFDAELLQLDKRSAT 85
Query: 100 V-VALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
V V D + V P + V A G G + DWL+EK ELG SV PL+T + R
Sbjct: 86 VQVGRFDAREVEPP---YRVVLAQGIAGGDKMDWLLEKAIELGVASVIPLVTARSV-VRL 141
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLL----PLVSQSKLAFVAI 214
G+ + + + G +L ++ PP + L L + L +
Sbjct: 142 TGERAARRHAHWQALVRAACEQCGRNQLPDVA--PPTDVMAWLESSVALPRDNALRLLLS 199
Query: 215 AEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274
A AL + + ++++GPEG + E + G +GLGP LR ETA IA
Sbjct: 200 PRAERPFAALPDTAPAAPVIVMIGPEGGLSATEEAAAISHGFMPLGLGPRVLRTETAGIA 259
Query: 275 LLATL 279
+LA L
Sbjct: 260 VLAAL 264
>gi|297568502|ref|YP_003689846.1| protein of unknown function DUF558 [Desulfurivibrio alkaliphilus
AHT2]
gi|296924417|gb|ADH85227.1| protein of unknown function DUF558 [Desulfurivibrio alkaliphilus
AHT2]
Length = 242
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 111/241 (46%), Gaps = 16/241 (6%)
Query: 46 RFFS-----QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV 100
RFF QG + G + H+ VLRL+ +RVELF+G+G + + I I+ GL
Sbjct: 3 RFFIDPEAIQGREASLTGSDAHHLQHVLRLTPGERVELFDGRGTVYQAAIDHIE-PGLTR 61
Query: 101 VALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIG 160
+ L P ++ A LKG + D +V+KCTELG +S+ P T H + G
Sbjct: 62 LTLLSSSDTPPDRLAIHLGQAM--LKGKKMDLVVQKCTELGVRSLRP-YTSQHTTTPPPG 118
Query: 161 DNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI--AEAT 218
+ I + + Q +PP LL + L + EA
Sbjct: 119 AEKLAR----WQRIIHESCKQCNQPWPPSC-HPPQTFAELLADAADFDLRLICWEEPEAP 173
Query: 219 PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
PL +S L+++GPEG F+ +E++ +AG +GLG LR ETA+I ++A
Sbjct: 174 PLSNIAEQLGAPASVLVLIGPEGGFSREEIDLARQAGFIVIGLGRRILRAETASIVIIAL 233
Query: 279 L 279
L
Sbjct: 234 L 234
>gi|377821658|ref|YP_004978029.1| hypothetical protein BYI23_A022140 [Burkholderia sp. YI23]
gi|357936493|gb|AET90052.1| hypothetical protein BYI23_A022140 [Burkholderia sp. YI23]
Length = 256
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 103/248 (41%), Gaps = 12/248 (4%)
Query: 39 QSRGGIPRFFSQG----GIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRID 94
+ R +PRF G G D+ VLRL T D + LF+G GG G + +D
Sbjct: 7 RDRTYMPRFHVDGPLSVGQTLALPDDVVRHVHVLRLQTGDPITLFDGAGGEYRGTL--VD 64
Query: 95 RTGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHL 154
A D + V A G G + DWL+EK ELG + P+ E +
Sbjct: 65 IAKRAATARLDEHSDREAEPPYRVTLAQGVAGGDKMDWLIEKAVELGVAGIAPITAERGV 124
Query: 155 QSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLL---PLVSQSKLAF 211
R G+ + + G R+ ++ PP +D L P +
Sbjct: 125 -VRLAGERALRRQAHWQALTRAACEQCGRNRVPDVA--PPRDLDAWLADLPTAIDGEWRL 181
Query: 212 VAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA 271
+ A +L + +++GPE F+ E + IV+AG A+GLGP LR ETA
Sbjct: 182 LLSPRADVNFASLPADAPHGPVTLLIGPEAGFSPAEESAIVDAGFAALGLGPRVLRTETA 241
Query: 272 TIALLATL 279
IA+LA L
Sbjct: 242 GIAVLAAL 249
>gi|229597247|ref|YP_001897009.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia phytofirmans
PsJN]
Length = 251
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 112/246 (45%), Gaps = 17/246 (6%)
Query: 44 IPRFFS----QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTG-- 97
+PRFF Q V D+ VLRL D + LFNG+GG + ++R
Sbjct: 6 MPRFFVGTPLQPEDVLPLPDDVVRHVLVLRLQPGDSIVLFNGEGGEYSAELVEVERRSAM 65
Query: 98 LDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
+ + D+++ P + + A G G + DWL+EK ELGA S PL T + R
Sbjct: 66 VKIREFRDIEVEAP----YRLTLAQGIAGGDKMDWLIEKAVELGASSFVPLTTTRSV-VR 120
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKID---GLLPLV-SQSKLAFVA 213
GD + G + S G RL E++ P +I G +P + L +
Sbjct: 121 LSGDRAQRRHAHWQGIVRASCEQCGRNRLPEVM--PVREIATWLGSMPRTPEEGDLRILL 178
Query: 214 IAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
A+ +AL S + ++VGPEG F+ E G TAVGLGP +R ETA I
Sbjct: 179 SPRASISFSALPSEPPKGRVTVLVGPEGGFSATEEAAAAAHGFTAVGLGPRVMRTETAGI 238
Query: 274 ALLATL 279
A+L+ L
Sbjct: 239 AVLSAL 244
>gi|227538374|ref|ZP_03968423.1| protein of hypothetical function DUF558 [Sphingobacterium
spiritivorum ATCC 33300]
gi|227241756|gb|EEI91771.1| protein of hypothetical function DUF558 [Sphingobacterium
spiritivorum ATCC 33300]
Length = 237
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 111/227 (48%), Gaps = 33/227 (14%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRID----RTGLDVVALEDLKLVLPQHT 114
+E H +VLRL+ D+V L +G+GG I ID RT L ++ +++ Q
Sbjct: 21 EESKHAVRVLRLANRDQVHLIDGRGGFYRAEI--IDAHPKRTALQIIEIQEAF----QKP 74
Query: 115 QWNVFAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGF 173
+++ A K R +W +EK TE+G Q +TP+++E H + +++ +
Sbjct: 75 SYHLHMAVAPTKNIERFEWFLEKATEVGVQEITPVISE-HSERKEVKPDRL--------- 124
Query: 174 IANSAFVYGGQRLHEMV---LNPPMKIDGLLP----LVSQSKLAFVAIAEATPLVTALSS 226
N V ++ ++ LNP + + L + +Q +A +E L +
Sbjct: 125 --NKVIVAAMKQSYKAYMPKLNPAITLTNFLKQQEQVSAQKAIAHCVDSEKKYLGQVFTP 182
Query: 227 SRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
++ +I++GPEGDF+ +E++K + +G + LG RLR ETA +
Sbjct: 183 QQD---YVILIGPEGDFSTEEISKTISSGFVPISLGEARLRTETAAL 226
>gi|410665234|ref|YP_006917605.1| 16S rRNA m3U1498 methyltransferase [Simiduia agarivorans SA1 = DSM
21679]
gi|409027591|gb|AFU99875.1| 16S rRNA m3U1498 methyltransferase [Simiduia agarivorans SA1 = DSM
21679]
Length = 242
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 119/249 (47%), Gaps = 26/249 (10%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTG- 97
IPR F + G V ++ D ++ VLR+ + +FNGKGG I +
Sbjct: 3 IPRLFVNTELASGHTVALDADASRYLAGVLRMEAGRPLTVFNGKGGEYAATIASAAKKAV 62
Query: 98 -LDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLT---ELH 153
L + A + + + + + G KG R DW+++K TELG +TPLLT E+
Sbjct: 63 TLTIGAFDPTE----KESPLAIHLGIGLSKGDRFDWVIQKATELGVTHITPLLTSRSEVK 118
Query: 154 LQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS-KLAFV 212
L + + D ++ IA SA QR V+ P+K+D L S++ KL
Sbjct: 119 LSAER-ADKKIA----HWQQIAVSA-CEQCQRNRLPVIAAPLKLDQWLADRSEALKLVLH 172
Query: 213 AIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
A+ ALS+ +S +++GPEG +++E+ + + G + LGP LR ETA
Sbjct: 173 HRAD-----RALSTHATPTSVAMVIGPEGGLSDEEIAQAQDQGFHPLQLGPRVLRTETAP 227
Query: 273 IALLATLML 281
IA L+ L +
Sbjct: 228 IAALSILQM 236
>gi|332531193|ref|ZP_08407106.1| 16S ribosomal RNA methyltransferase RsmE [Hylemonella gracilis ATCC
19624]
gi|332039300|gb|EGI75713.1| 16S ribosomal RNA methyltransferase RsmE [Hylemonella gracilis ATCC
19624]
Length = 248
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 103/248 (41%), Gaps = 14/248 (5%)
Query: 44 IPRF---------FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRID 94
+PRF GG V + + H+ +VLRL D + LFNG+ G + R+
Sbjct: 1 MPRFHCPEEPSSVLRAGGEVELPPETARHV-QVLRLQPGDTLTLFNGRSGEWTATVLRMG 59
Query: 95 RTGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHL 154
R + V D + + +V A G R DWLVEK ELG S+ PL TE +
Sbjct: 60 RASVTVRV--DHHHAVEREAPLDVHLAVGMPANERMDWLVEKAVELGVASIQPLQTERSV 117
Query: 155 QSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEM-VLNPPMKIDGLLPLVSQSKLAFVA 213
R G+ + G + G RL + + P + P Q +
Sbjct: 118 L-RLSGERALKKQLHWQGIAIAACEQCGRNRLPPVHAVRPLQDVAAWSPPEVQRRFVLSL 176
Query: 214 IAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
+ P+ L+S + S L++ GPEG + E AG V LG LR ETA +
Sbjct: 177 DDDCVPISQVLASRGSTGSVLLLSGPEGGLSPTEEQAARAAGFQPVSLGQRTLRAETAPL 236
Query: 274 ALLATLML 281
A LA L L
Sbjct: 237 AALAVLTL 244
>gi|406940689|gb|EKD73378.1| hypothetical protein ACD_45C00338G0002 [uncultured bacterium]
Length = 242
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 120/227 (52%), Gaps = 21/227 (9%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
H+ +VLR + +D V +FNG+GG EG I++I++ + V ++ + + + ++ A
Sbjct: 26 HLARVLRATIHDPVIIFNGQGGEYEGVIKQIEKKQVTVEIMQHVAREV--ESPLEIWLAQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTEL------HLQSRKIGDNGFLSCNFYYGFIAN 176
G +G + D++++K ELG + + PL TE H + K + ++ IA
Sbjct: 84 GISRGEKMDYIIQKSVELGVKKIIPLFTERCNVKLDHARGEKRQE--------HWQSIAV 135
Query: 177 SAFVYGGQ-RLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLI 235
SA G+ R+ E++L P ID L + Q++ FV A V + + + ++
Sbjct: 136 SACEQSGRNRIPEVLL--PQSIDTWL-MTVQAEYCFVLSPHAEQKVKEWTIPKT-AQIVL 191
Query: 236 IVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLC 282
++GPEG +E+E+N+ ++ ++ LGP +R ETA +A +A L C
Sbjct: 192 LIGPEGGLSEQEMNQALQHHFFSLNLGPRIMRTETAAVAAIAALQGC 238
>gi|374373947|ref|ZP_09631606.1| Ribosomal RNA small subunit methyltransferase E [Niabella soli DSM
19437]
gi|373233389|gb|EHP53183.1| Ribosomal RNA small subunit methyltransferase E [Niabella soli DSM
19437]
Length = 236
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 107/223 (47%), Gaps = 18/223 (8%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
H+ +VLR+ T +R+ L +G G L+ + + +V A+E + + P H Q + A
Sbjct: 27 HIVQVLRMETGERLHLTDGCGHLLTAIVTNPHKKHCEV-AIEHSEFIPPAHPQITI--AI 83
Query: 123 GTLKGG-RADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVY 181
LK R +W +EK TE+G ++ PL+T+ ++ KI N + S V+
Sbjct: 84 ALLKNASRFEWFLEKATEIGVHAIVPLITD---RTEKIRTKTERLQNILVSALLQSRQVW 140
Query: 182 GGQRLHEMVLNPPMKIDGLL--PLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGP 239
Q L P K + P + F+A + S N ++ ++++GP
Sbjct: 141 LPQ------LPEPAKFTDFMNGPEWQTTPQKFIAHCLEHEKASLRQQSINNNT-ILLIGP 193
Query: 240 EGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLC 282
EGDFT E+ +E G AV LG RLR ETA ++A ++LC
Sbjct: 194 EGDFTTNEIGAALENGYKAVTLGETRLRSETA--GVVAAVLLC 234
>gi|228473117|ref|ZP_04057874.1| RNA methyltransferase, RsmE family [Capnocytophaga gingivalis ATCC
33624]
gi|228275699|gb|EEK14476.1| RNA methyltransferase, RsmE family [Capnocytophaga gingivalis ATCC
33624]
Length = 243
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 108/239 (45%), Gaps = 18/239 (7%)
Query: 47 FFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRI-DRTGLDVVALED 105
+ Q V + +E H+ KVLR T D + + +G+G L E IQ I D+ +
Sbjct: 9 LYPQVQEVTFDKEESNHIHKVLRKKTGDLLFITDGRGYLYEAQIQYITDKKCTAHILSHS 68
Query: 106 LKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFL 165
L H A T R +W +EK TE+G VTP+L + H + + I F
Sbjct: 69 LAPTPAYHLH---IAVAPTKMNERYEWFLEKATEIGVHEVTPILCD-HSERKTIKTERFE 124
Query: 166 SCNFYYGFIANSAFVYGGQRLHEMVLNPPMKI-DGLLPLVSQSKLAFVAIAEA---TPLV 221
+ S Y Q LNPP+ + + L + S S +VA + L+
Sbjct: 125 --KILLSAMKQSLQCYKPQ------LNPPISLLEWLDTIESNSVGKYVAHCQEGARVLLL 176
Query: 222 TALSSSRNESSGL-IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
L E++ L +++GPEGDF+++E+ K G + L P+RLR ETA I + +
Sbjct: 177 DRLEELPQETTNLWVLIGPEGDFSQREIQKACSKGFLPISLSPNRLRTETAAIVACSCI 235
>gi|388256332|ref|ZP_10133513.1| hypothetical protein O59_000603 [Cellvibrio sp. BR]
gi|387940032|gb|EIK46582.1| hypothetical protein O59_000603 [Cellvibrio sp. BR]
Length = 241
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 115/247 (46%), Gaps = 30/247 (12%)
Query: 44 IPRFFSQ-----GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
IPR F++ G + +E H++KVLR+ + LFNG GG I + + +
Sbjct: 3 IPRIFTEQNLLSGEQIELEESASHHLSKVLRMQAGRELILFNGAGGEFAATIHEVTKKHV 62
Query: 99 DVVALED--------LKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLT 150
V E LKL L A G +G R +W+++K TELG +TPL+T
Sbjct: 63 IVSVQEHSADNRESPLKLEL----------AIGISRGERFEWVLQKATELGVTKITPLIT 112
Query: 151 ELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLA 210
E + + GD + + + ++ QR L+ P++I LP V+ S L
Sbjct: 113 E-RTEVKVNGDRQEKMHDRWQHILISAC--EQCQRNLLPQLSAPIQISDWLPSVN-SDLR 168
Query: 211 FVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
FV + + A +N + +++GPEG +E E+ + + A+ LGP LR ET
Sbjct: 169 FVLHHRDSKTLPAEQKPQNIT---LLIGPEGGLSESEIEQALAKNFNALTLGPRVLRTET 225
Query: 271 ATIALLA 277
A +A ++
Sbjct: 226 APVAAIS 232
>gi|119475424|ref|ZP_01615777.1| hypothetical protein GP2143_16431 [marine gamma proteobacterium
HTCC2143]
gi|119451627|gb|EAW32860.1| hypothetical protein GP2143_16431 [marine gamma proteobacterium
HTCC2143]
Length = 241
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 110/241 (45%), Gaps = 14/241 (5%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
I R ++Q + V +E H++KVLRL V LFNG G G I I + +
Sbjct: 3 ISRIYTQATLQASQSVELEEKPSHHLSKVLRLKVGSDVILFNGDGYDYSGHINAIGKKSV 62
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
+ D + + + + KG R DW+++K TELG +TPLLTE K
Sbjct: 63 GIYI--DSREIKHSESSLKIHLGVAVSKGDRMDWIIQKSTELGVDEITPLLTE--RTELK 118
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT 218
+ + ++ IA SA G R +N + + + ++ FV +T
Sbjct: 119 LKGDRKEKKQHHWQQIAISACEQSG-RAQLPSINRIQHLSEWIQTIEATR-KFVLHHRST 176
Query: 219 PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
L L+S+ + SS +++GPEG +E E+ A+ LGP LR ETA +A ++
Sbjct: 177 AL---LNSNDDVSSACLLIGPEGGLSEDEIALAEHYHFDALQLGPRILRTETAPLAAISI 233
Query: 279 L 279
L
Sbjct: 234 L 234
>gi|269837717|ref|YP_003319945.1| hypothetical protein Sthe_1689 [Sphaerobacter thermophilus DSM
20745]
gi|269786980|gb|ACZ39123.1| protein of unknown function DUF558 [Sphaerobacter thermophilus DSM
20745]
Length = 249
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 111/244 (45%), Gaps = 27/244 (11%)
Query: 44 IPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKG----GLIEGCIQRIDRTGLD 99
+P G V + ++ +VLRL+ V LFNG G G IE C R
Sbjct: 10 LPAPLPPGESVALTEEQARQAARVLRLAPGAPVVLFNGDGQEVPGTIEDCAPR------- 62
Query: 100 VVALEDLKLVLPQHTQW----NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQ 155
++L P+ + + A +K R DW+V+K TELG +TPL T +
Sbjct: 63 ---RVTVRLGEPRAGRSCPVPAIHVAQALIKADRFDWVVQKVTELGVARITPLATSRTVV 119
Query: 156 SRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIA 215
S + + + +A G + E ++ P +D LLPL+++
Sbjct: 120 SLPV-ERARQRRERWQRIAVEAAEQSGRVTIPE--IDEPATLDDLLPLMARIPALVCWEN 176
Query: 216 EATPLVTALSSSRNESSG--LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
EA PL R ++G L+++GPEG FT +E+ V+AGA V LGP LR ETA +
Sbjct: 177 EAMPL----HRVRLPTAGPLLVVIGPEGGFTREEIAAAVDAGARTVSLGPLILRSETAAL 232
Query: 274 ALLA 277
A LA
Sbjct: 233 AALA 236
>gi|392419393|ref|YP_006455997.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas stutzeri CCUG
29243]
gi|390981581|gb|AFM31574.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas stutzeri CCUG
29243]
Length = 238
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 102/215 (47%), Gaps = 11/215 (5%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLRLS V+LF+G G G + + + + V E L +P+ +
Sbjct: 26 YISRVLRLSAGSAVQLFDGSGSEFRGELLEVGKKSVTVELHERLT-GMPE-SPLQTHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TP+++E ++ D ++ IA SA
Sbjct: 84 GLSRGERMDWAIQKATELGVTQITPIISERC--EVRLNDERADKRLAHWRQIAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G+ + V++PPM + LP+ + KL P+ L+S + ++GPEG
Sbjct: 142 GRSVLP-VIHPPMSLSDWLPVEADLKLVL------HPVAAPLTSHARPQTLAFLIGPEGG 194
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
+E EV + G LGP LR ETA + L+
Sbjct: 195 LSESEVEQAANQGFQPARLGPRVLRTETAPVVALS 229
>gi|374386626|ref|ZP_09644124.1| RsmE family RNA methyltransferase [Odoribacter laneus YIT 12061]
gi|373223576|gb|EHP45924.1| RsmE family RNA methyltransferase [Odoribacter laneus YIT 12061]
Length = 241
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 106/240 (44%), Gaps = 17/240 (7%)
Query: 50 QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLV 109
+G I R+ +E H KVLRL D V L +G+GG G I + G V +
Sbjct: 10 EGEIYRLNPEESKHCIKVLRLEEGDTVALVDGRGGFYSGIITVANVKGCQV----KVTAC 65
Query: 110 LPQHTQ--WNVFAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLS 166
Q+ + + + A K R +W +EKCTE+G TP+ H + R + +
Sbjct: 66 TRQYEKRPFCLHIAIAPTKNIERTEWFLEKCTEIGIDEFTPIAA-AHSERRVVKEERLEK 124
Query: 167 CNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSS 226
A + + + VL+P M+ L + Q K F+A +
Sbjct: 125 --------VIVAAMKQSLKAYLPVLHPMMRFQEFL-VNCQYKHKFIAHCQPGTKKRLDEV 175
Query: 227 SRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSDSQ 286
+I++GPEGDF+E+EV + + G ++ LGP RLR ETA + ++ ++ Q
Sbjct: 176 YTAGEDAVILIGPEGDFSEEEVAEAAKYGFVSITLGPSRLRTETAGVVACHSINFLNEQQ 235
>gi|413958870|ref|ZP_11398109.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia sp. SJ98]
gi|413941450|gb|EKS73410.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia sp. SJ98]
Length = 245
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 102/243 (41%), Gaps = 12/243 (4%)
Query: 44 IPRFFSQGGIVRVEG----DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
+PRF G + + D+ VLRL T D + LF+G+GG G + +D
Sbjct: 1 MPRFHVDGPLCAGQTFALPDDVVRHVHVLRLQTGDAITLFDGRGGEYRG--ELVDIAKRA 58
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
A D + V A G G + DWL+EK ELG + P+ E + R
Sbjct: 59 ATARIDEHSDREAEPPYRVTLAQGVAGGDKMDWLIEKAVELGVSGIAPITAERGV-VRLA 117
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLL---PLVSQSKLAFVAIAE 216
G+ + + G R+ E+ PP + L P +L +
Sbjct: 118 GERALRRQAHWQALTRAACEQCGRNRVPEVA--PPRDLGAWLADLPAAIDGELRLLLSPR 175
Query: 217 ATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALL 276
A +L S +++GPE F+ E IV+AG + +GLGP LR ETA IA+L
Sbjct: 176 AEVSFASLPVDPPASPVTLLIGPEAGFSPAEETAIVDAGFSTLGLGPRVLRTETAGIAVL 235
Query: 277 ATL 279
A L
Sbjct: 236 AAL 238
>gi|337281454|ref|YP_004620926.1| hypothetical protein Rta_37920 [Ramlibacter tataouinensis TTB310]
gi|334732531|gb|AEG94907.1| conserved hypothetical protein [Ramlibacter tataouinensis TTB310]
Length = 240
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 115/247 (46%), Gaps = 21/247 (8%)
Query: 43 GIPRF-----FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTG 97
G+PRF + G ++ G +VLRL D + LF+G+GG + I+R+ R+
Sbjct: 4 GMPRFHCPEPLAAGPLLLPPGAA--RHAQVLRLQPGDAITLFDGRGGQWQAVIERMGRS- 60
Query: 98 LDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
+V L + + V A G R DWLVEK +ELGA SV PLL E +
Sbjct: 61 -EVAVLVGAHQAVEREAPREVHLAVGIPANERMDWLVEKASELGAASVQPLLAERSV--- 116
Query: 158 KIGDNGFLSCN--FYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIA 215
+ NG + ++ +A +A G R V++ P ++ P + +++A
Sbjct: 117 -LKPNGERAAKKQAHWQAVAVAACEQCG-RNRVPVVHAPAALEDWQPAAGGRRW-LLSLA 173
Query: 216 EATP-LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274
+ P TALS+ ++ GPEG T +E + G V LG LR ETA +A
Sbjct: 174 DGAPGAATALSAP---GPAWVLSGPEGGLTAQEEALALARGFERVSLGQRVLRAETAPLA 230
Query: 275 LLATLML 281
+LA L +
Sbjct: 231 MLALLTM 237
>gi|89891576|ref|ZP_01203080.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7]
gi|89516123|gb|EAS18786.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7]
Length = 234
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 107/231 (46%), Gaps = 16/231 (6%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRI--DRTGLDVVALEDLKLVLPQH 113
++ +E H+ KVLR + D + + +G+G L G I I +R LD+ E P H
Sbjct: 18 LDREESKHVFKVLRKNIGDIINITDGRGNLYHGTINHITSNRCDLDIAFAE----AYPTH 73
Query: 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGF 173
+ A T R +W +EK TE+G +TP+L++ H + +KI + F
Sbjct: 74 DYYLHIAIAPTKMNDRMEWFLEKATEMGISRITPILSQ-HSERQKINLDRF-------NR 125
Query: 174 IANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSG 233
I SA Q H+ L+ + + + S F+A E + +S
Sbjct: 126 IIVSAMKQSLQ-FHKPELDALTNFEDFINAKNVSD-KFIAHCEDGDKNHLKNLIHKGNST 183
Query: 234 LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSD 284
+++GPEGDFT +E+ ++ V LG RLR ETA + ATL + +D
Sbjct: 184 TVLIGPEGDFTPQEIEMALKNDFKPVSLGSTRLRTETAGVYTAATLNIFND 234
>gi|392950864|ref|ZP_10316419.1| hypothetical protein WQQ_04910 [Hydrocarboniphaga effusa AP103]
gi|391859826|gb|EIT70354.1| hypothetical protein WQQ_04910 [Hydrocarboniphaga effusa AP103]
Length = 241
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 103/223 (46%), Gaps = 12/223 (5%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
D F H +VLR D +LF+G G E + I + V ++ + + + +
Sbjct: 21 DAFRHWVQVLRARVGDTAQLFDGSGDEFEAQLLAIGKRSAQVRI--GARIAVDRESPLRL 78
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSA 178
A KG R D+ ++K ELG + PLLTE + + + + G I ++
Sbjct: 79 SLAQAVSKGDRMDYTLQKAVELGVNEIQPLLTERTV-VKVDAERWEKKLEHWRGVIVSAC 137
Query: 179 FVYGGQRLHEMVLNPPMKIDGLL--PLVSQSKLAFVAIAEATPLVTALSSSRNESSGLII 236
G RL L+P +K+D L P + +L A+ +AL + SS ++
Sbjct: 138 EQSGRTRLP--TLHPVLKLDSWLAQPPAHELRLTLAPTAQ-----SALRNLPKVSSACLL 190
Query: 237 VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
VGPEG +E E+ +G TAV LGP LR ETA +A ++ +
Sbjct: 191 VGPEGGLSEAEIALAQRSGWTAVKLGPRVLRTETAGVAAMSAM 233
>gi|333891895|ref|YP_004465770.1| hypothetical protein ambt_02070 [Alteromonas sp. SN2]
gi|332991913|gb|AEF01968.1| hypothetical protein ambt_02070 [Alteromonas sp. SN2]
Length = 242
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 100/217 (46%), Gaps = 8/217 (3%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
H+ VLRL N + LFNG G E Q I+ V D L L + + N+
Sbjct: 27 HIASVLRLKANHPIVLFNGDGN--EYSAQIINAQRKKVFVEADACLTLSKESSLNIHLGQ 84
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G KG R D +++K ELG +TP+L+E + K+ + + + I A
Sbjct: 85 GVSKGDRMDTVLQKSVELGVTEITPILSERC--TVKLDEARWEKKLLQWQKIIIGACEQS 142
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G R LNPP+ ++ L + S +A PL N +++GPEG
Sbjct: 143 G-RNTLPSLNPPIALNKWLSESTSSSRLVLAPGAEKPLA---RQPYNSQGFRLLIGPEGG 198
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
+E E+++ E+G T+ LGP LR ETA I+ ++ L
Sbjct: 199 LSEGEIHQANESGFTSCSLGPRILRTETAAISSISIL 235
>gi|295677690|ref|YP_003606214.1| hypothetical protein BC1002_2655 [Burkholderia sp. CCGE1002]
gi|295437533|gb|ADG16703.1| protein of unknown function DUF558 [Burkholderia sp. CCGE1002]
Length = 246
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 109/245 (44%), Gaps = 15/245 (6%)
Query: 44 IPRFFSQG-----GIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF ++ + D H+ VLRL D + LFNG+GG + ++R
Sbjct: 1 MPRFFVDALLYPDDVIALPDDVVRHVA-VLRLQPGDSLVLFNGRGGEYGAELVEVERRSA 59
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
V E + + + + A G G + DWL+EK ELGA PL T + R
Sbjct: 60 RVKIGEFRAVEV--EPPYRLTLAQGIAGGDKMDWLIEKAVELGASGFVPLATARSV-VRL 116
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQ----SKLAFVAI 214
G+ + G + S G RL ++ P +I L +S+ +L +
Sbjct: 117 TGERAQRRQQHWQGVVRASCEQCGRNRLPDV--TPVGEIGPWLDTLSREPAPDELRLLLS 174
Query: 215 AEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274
A+ AL + +++GPEG + E VE G TAVGLGP LR ETA IA
Sbjct: 175 PRASIGFAALPDAPPPGGVTLLIGPEGGLSADEEAAAVEQGFTAVGLGPRVLRTETAGIA 234
Query: 275 LLATL 279
+LA L
Sbjct: 235 VLAAL 239
>gi|152981289|ref|YP_001352520.1| 16S ribosomal RNA methyltransferase RsmE [Janthinobacterium sp.
Marseille]
gi|151281366|gb|ABR89776.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
Length = 241
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 109/242 (45%), Gaps = 14/242 (5%)
Query: 44 IPRFFSQG----GIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
+PRF+ G V D H +V+RL + D + LFNG+GG I I++ +
Sbjct: 1 MPRFYCPQPLAIGAVITLPDHVAHHIQVVRLGSGDHITLFNGEGGEYTATITTIEKKRVT 60
Query: 100 VVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
++KL P+ + + V A + + DW++EK ELG ++ PL ++ R
Sbjct: 61 A----EIKLFTPREVELPYAVTVAQALPEASKMDWIIEKAVELGVHAIQPLASQ-RCVVR 115
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA 217
+ + G I ++ G RL L P+ + + K ++ A
Sbjct: 116 LSAERAAKKMQHWQGVIVAASEQSGRNRL--AALAEPVDFNQWVQQKDLHKRILLS-PRA 172
Query: 218 TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
++ + S +++GPEG FT+KE + + GA + +GP LR ETA ++ LA
Sbjct: 173 EQSLSDWARHHPPQSVALMIGPEGGFTDKEEDLALAQGALMLSMGPRVLRTETAGLSALA 232
Query: 278 TL 279
L
Sbjct: 233 AL 234
>gi|408371254|ref|ZP_11169023.1| 16S ribosomal RNA methyltransferase RsmE [Galbibacter sp. ck-I2-15]
gi|407743349|gb|EKF54927.1| 16S ribosomal RNA methyltransferase RsmE [Galbibacter sp. ck-I2-15]
Length = 239
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 104/243 (42%), Gaps = 20/243 (8%)
Query: 45 PRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE 104
P + + +E H+ KVLR + D + + NGKG + E I D V L
Sbjct: 7 PDLVETSKEYQFDKEESRHIHKVLRKTIGDSLHITNGKGWIFEAKILASDAKQCSVQLLS 66
Query: 105 DLKLVLPQHTQWNVFAAFGTLK-GGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNG 163
++ + A K R +W +EK TE+G +TP++ + RK+
Sbjct: 67 S---TFKNPRRYRLHMAVAPTKMNDRFEWFLEKATEIGIDEITPIICDH--SERKV---- 117
Query: 164 FLSCNFYYGFIANSAFVYGGQRLHEM--VLNPPMKIDGLLPLVSQSKLA---FVAIAEAT 218
+ Y I ++A Q L+ VL+PP L+ VS+ + F+A E
Sbjct: 118 -VKLERYEKIIQSAA----KQSLNPYLPVLHPPQSFSDLIGSVSKQAVNEQLFIAHCEDQ 172
Query: 219 PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
T + + S LI++GPEGDF+ E+ + AV LG RLR ETA I T
Sbjct: 173 QKQTLQQAIEKQQSALILIGPEGDFSPSEIITALANDFKAVSLGDSRLRTETAAIVACHT 232
Query: 279 LML 281
L
Sbjct: 233 FAL 235
>gi|196231634|ref|ZP_03130492.1| protein of unknown function DUF558 [Chthoniobacter flavus Ellin428]
gi|196224487|gb|EDY18999.1| protein of unknown function DUF558 [Chthoniobacter flavus Ellin428]
Length = 249
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 100/229 (43%), Gaps = 17/229 (7%)
Query: 60 EFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVF 119
E H VLR+ DR LFNG+G I +D+ +AL+ + + + +
Sbjct: 22 ETHHALDVLRMKAGDRATLFNGQGAEATVEIASVDKGK---IALKKISVSKSEPIGCQIV 78
Query: 120 AAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAF 179
KG D +VEK TELGA + PLL+E + G+ L+ + +A A
Sbjct: 79 LGQAIPKGKNMDLIVEKATELGAAGIVPLLSERTVVRCDEGEA--LAKREKWQRVAIEAA 136
Query: 180 VYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP--------LVTALSSSRNES 231
GQ V P D S K + IA P L A +S + +
Sbjct: 137 KQCGQNWLPTVFKPQSPKDFFQ---SGEKFDLMLIASLQPDSRHVKEVLAEAGASGKKKP 193
Query: 232 SG-LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
+ L++VGPEGDFT EVN AG V LGP LR ETA I L+ L
Sbjct: 194 ARVLVLVGPEGDFTPAEVNLAKNAGCRPVTLGPIILRSETAAIYCLSVL 242
>gi|78486164|ref|YP_392089.1| hypothetical protein Tcr_1823 [Thiomicrospira crunogena XCL-2]
gi|78364450|gb|ABB42415.1| Conserved hypothetical protein with DUF 558 [Thiomicrospira
crunogena XCL-2]
Length = 245
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 110/241 (45%), Gaps = 11/241 (4%)
Query: 44 IPRF-----FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
IPRF F +G + ++ + + VLRL +E+F+GKG +Q R
Sbjct: 3 IPRFYLPVTFQEGERISLDKAQAHYALTVLRLKDQRPIEVFDGKGHQAHATLQVTGRKTA 62
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
DV +E + V + V G KG R D+ ++K ELG ++ PL TE +
Sbjct: 63 DVF-IERCESVNTESPLQTVLLQ-GISKGDRMDYTIQKSVELGVTAIQPLFTE-RCDVKL 119
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT 218
GD + IA +A + + VL P D L S L AE T
Sbjct: 120 TGDR-LDKKRTQWQDIAINACEQSNRNVVPAVLPPLSYSDWLSTQTLVSGLVLSPTAEHT 178
Query: 219 PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
+ L SS +E S +++GPEG T++EV + + G T + LGP LR ETA + +L+
Sbjct: 179 --LQTLPSSLSEQSVHLLIGPEGGLTDEEVLQGTQKGLTPIQLGPRILRTETAGVVVLSA 236
Query: 279 L 279
L
Sbjct: 237 L 237
>gi|395648990|ref|ZP_10436840.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas
extremaustralis 14-3 substr. 14-3b]
Length = 239
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 108/219 (49%), Gaps = 18/219 (8%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR+ D V+LF+G G G + + + + V E + + ++
Sbjct: 26 YISRVLRMGEGDAVQLFDGSGQEFRGTLLEVGKKRVSVQLTE--QFAGQAESPLHIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G +G R DW ++K TELG ++TP+ +E + L+ + D L ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVNAITPIFSERCEVRLKDER-ADKRLL----HWRQVAISAC 138
Query: 180 VYGGQRLHEMVLNPPMKI-DGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVG 238
G R V++PP+ + D L + KL +AE PLV S SS ++G
Sbjct: 139 EQCG-RSTVPVIHPPLLLADWLKQTEADLKLVLHPVAE--PLV----SHAKPSSLAFLIG 191
Query: 239 PEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
PEG T+ EV+ +AG A LGP LR ETA + LA
Sbjct: 192 PEGGLTDSEVDTAQDAGFHAARLGPRVLRTETAPVVALA 230
>gi|383933961|ref|ZP_09987404.1| 16S rRNA (uracil1498-N3)-methyltransferase [Rheinheimera
nanhaiensis E407-8]
gi|383704960|dbj|GAB57495.1| 16S rRNA (uracil1498-N3)-methyltransferase [Rheinheimera
nanhaiensis E407-8]
Length = 276
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 16/244 (6%)
Query: 44 IPRFFSQGGIV-----RVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
IPR + G I +++ D H+ +VLR+ ++LFNG G I D+ +
Sbjct: 37 IPRIYHSGAIALNSEFQLDEDAANHVGRVLRMPNGSELQLFNGDGFNYSANISNSDKKRV 96
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
V+ K P + ++ G +G R D+ ++K ELG +TPL TE K
Sbjct: 97 WVITTA--KHDNPVESPLSIHLGQGISRGDRMDFAIQKAVELGVTEITPLFTERC--GVK 152
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS-KLAFVAIAEA 217
+ N + IA SA G R ++P + +D L +++ KL A+
Sbjct: 153 LDGERLTKRNEQWQKIAISACEQSG-RSRVPTVHPAITLDNWLAQQTKALKLTLHPWAKD 211
Query: 218 TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
T + T + +++ +++GPEG F+E+E+ + AG T + LGP LR ETA + ++
Sbjct: 212 T-IKTLIPNTQIR----LVIGPEGGFSEQEMAQTTAAGFTGIQLGPRVLRTETAALTAIS 266
Query: 278 TLML 281
L L
Sbjct: 267 ALQL 270
>gi|304316647|ref|YP_003851792.1| hypothetical protein Tthe_1189 [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778149|gb|ADL68708.1| protein of unknown function DUF558 [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 240
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 111/233 (47%), Gaps = 8/233 (3%)
Query: 50 QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLV 109
+ GIVR+ GD+ H+ VLR ++ + NGK I + I+ + + + +E+ V
Sbjct: 7 KDGIVRINGDDAHHIIDVLRFKIGTKLIISNGKNQYIVSILD-IENSSVILKIIEEYNQV 65
Query: 110 LPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNF 169
+ + N+ G K + D +++KCTE+G + + P+ TE + KI + +
Sbjct: 66 V--ESPINITLYQGLPKSDKMDLIIQKCTEIGIKKIVPVETEF--STIKIKEKNIYNKIN 121
Query: 170 YYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP--LVTALSSS 227
+ I+ A G+ + VL P D L L ++ L + + T L L +
Sbjct: 122 RWKKISLEASKQSGRSIVPDVLVPVGFKDALESL-NEFDLCLIPYEKETNMRLKDVLKKN 180
Query: 228 RNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
N + + +GPEG F+E E+ +E GA V LGP LR ETA I + ++
Sbjct: 181 FNAKNICVFIGPEGGFSENEIMAAIEYGAIPVTLGPRILRTETAGIVTSSIIL 233
>gi|402300027|ref|ZP_10819580.1| ribosomal RNA small subunit methyltransferase E [Bacillus
alcalophilus ATCC 27647]
gi|401724818|gb|EJS98147.1| ribosomal RNA small subunit methyltransferase E [Bacillus
alcalophilus ATCC 27647]
Length = 248
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 115/244 (47%), Gaps = 39/244 (15%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGG-----LIEGCIQRIDRTGLDVVALEDLKLVL 110
+ GD+ H+++V+R+ + D + + + G L+E + ++ + DLK L
Sbjct: 16 ITGDDAKHISRVMRMESGDSIICLSEREGAYLCQLLEVSSDEVSAKPMEAI---DLKTEL 72
Query: 111 PQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHL------QSRKIGDNGF 164
P H V A G KG + D++V+K TELGA P+ T + +SRK +
Sbjct: 73 PVH----VTIAQGLPKGDKLDYIVQKGTELGASRFIPMQTSRAIVKWDEKKSRKKIER-- 126
Query: 165 LSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSK------LAFVAIA--- 215
IA A R V+ + GL + QSK +A+ +A
Sbjct: 127 ------LQKIAKEA-AEQSYRAKVPVVENSVSFKGL---IEQSKQFDQILVAYEEVAKQH 176
Query: 216 EATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIAL 275
E + L L + NE S L+++GPEG +E EV ++ + GA GLGP LR ETA++ +
Sbjct: 177 ETSQLANVLQTLENEHSILVVIGPEGGLSEDEVCQLEQVGAKICGLGPRILRTETASLYV 236
Query: 276 LATL 279
LA L
Sbjct: 237 LAAL 240
>gi|390566384|ref|ZP_10246775.1| conserved hypothetical protein [Nitrolancetus hollandicus Lb]
gi|390170369|emb|CCF86121.1| conserved hypothetical protein [Nitrolancetus hollandicus Lb]
Length = 264
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 109/248 (43%), Gaps = 36/248 (14%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRI--DRTGLDVVALED 105
++G +V + D + KVLRL D + LF+G+GG + + +RT + + +
Sbjct: 16 LAEGAVVTLPRDRSLQIAKVLRLRAGDEIVLFDGRGGEFPARLIDVSPERTMVSIGSRSA 75
Query: 106 LKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFL 165
+ Q + A LK + DW+V+K TELG ++TP++TE + S G
Sbjct: 76 GR----ADPQPAIHLAPALLKADKFDWVVQKATELGVVAITPVITERTVISLAADRAGRR 131
Query: 166 SCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTAL- 224
+ IA A G+ V +P + F+ + E TP AL
Sbjct: 132 RERWQR--IAIEAAEQSGRTQVPAVADP---------------IPFMTLLERTPGTPALL 174
Query: 225 ------------SSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
S N L++VGPEG FT EV + AGA V LGP LR ETA
Sbjct: 175 FWEGEREQGLAPVPSGNGGPLLVLVGPEGGFTPDEVQTAIGAGARTVSLGPLILRSETAA 234
Query: 273 IALLATLM 280
IA +A ++
Sbjct: 235 IAGVAMIL 242
>gi|319954606|ref|YP_004165873.1| ribosomal RNA small subunit methyltransferase e [Cellulophaga
algicola DSM 14237]
gi|319423266|gb|ADV50375.1| Ribosomal RNA small subunit methyltransferase E [Cellulophaga
algicola DSM 14237]
Length = 238
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 102/228 (44%), Gaps = 17/228 (7%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
+E H+ KVLR D + L NGKG L E I R D L A++ +K + +
Sbjct: 21 EESKHIVKVLRKKEGDILHLTNGKGYLFEAEILRAD---LRKCAVKIIKETYHKKNSPAL 77
Query: 119 FAAFGTLK-GGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANS 177
K R +W +EK TE+G +TP++ + RK+ L + +
Sbjct: 78 HLVVAPTKMNDRYEWFLEKATEIGVTEITPIICDN--SERKV-----LKLDRMEKVL--Q 128
Query: 178 AFVYGGQRLHEMVLNPPMKIDGLL----PLVSQSKLAFVAIAEATPLVTALSSSRNESSG 233
A + + H+ +LN P+ + P + + F+A E T + +
Sbjct: 129 AAMKQSLQFHKPILNEPISAKTFIEQNNPTHQEEQQFFIAHCEETEKIDLKERLIPSHNA 188
Query: 234 LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
LI++GPEGDF+ E+ + G V LG +RLR ETA I AT+ L
Sbjct: 189 LILIGPEGDFSTSEIEIALRLGYKPVSLGENRLRTETAAIFACATMKL 236
>gi|402832411|ref|ZP_10881058.1| RNA methyltransferase, RsmE family [Capnocytophaga sp. CM59]
gi|402277308|gb|EJU26388.1| RNA methyltransferase, RsmE family [Capnocytophaga sp. CM59]
Length = 245
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 103/236 (43%), Gaps = 22/236 (9%)
Query: 45 PRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRI-DRTGLDVVAL 103
P ++ + + +E H+ KVLR D + + +GKG L +G I + D+ L +
Sbjct: 7 PSLSAESETLLFDKEESTHIYKVLRKKAGDTLHITDGKGYLYQGQILEVSDKKCLVHLRS 66
Query: 104 EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNG 163
+L P H V T R +W VEK E+G Q +TP++ E RK+
Sbjct: 67 CELTPAPPYHLHMVVAP---TKMNERYEWFVEKAMEIGLQELTPIICEH--SERKVIKTE 121
Query: 164 FLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPL--- 220
L + S Y + +NPP+ + L V E L
Sbjct: 122 RLE-KILLSAMKQSLQCYLPK------INPPITLLEWLNKVPNEAKYIAHCQEGNRLALF 174
Query: 221 ---VTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
T SS +N + I++GPEGDF+ KE+ K + G T V L PHRLR ETA +
Sbjct: 175 ELLCTLPSSVKNIT---ILIGPEGDFSSKEIEKALSMGFTPVILSPHRLRTETAAV 227
>gi|387128291|ref|YP_006296896.1| ribosomal RNA small subunit methyltransferase E [Methylophaga sp.
JAM1]
gi|386275353|gb|AFI85251.1| Ribosomal RNA small subunit methyltransferase E [Methylophaga sp.
JAM1]
Length = 242
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 107/225 (47%), Gaps = 21/225 (9%)
Query: 61 FWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFA 120
F H +VLR+ + LF+G+G + ++++D+ V+L+ ++ + ++
Sbjct: 25 FRHAVQVLRMKPGALLNLFDGQGLEYQAQLEQVDKRQA-TVSLQQ-QIHTDNESPLDILL 82
Query: 121 AFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFV 180
G +G R D+ ++K ELG + + P++TE + GD N + G I ++
Sbjct: 83 MQGISRGERMDYAIQKAVELGVKRIMPVVTE-RCNVQLSGDRAEKRINHWQGVIISACEQ 141
Query: 181 YGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLV------TALSSSRNESSGL 234
G L E LLP+ S AF + +A LV + SS +
Sbjct: 142 SGRSYLPE-----------LLPIASIDS-AFGNVNDACKLVLDPEAIKSFSSVKKAQQIA 189
Query: 235 IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
+++GPEG +E EV + +AG T + LGP LR ETA+ A LA +
Sbjct: 190 LLIGPEGGLSETEVQRANDAGFTGITLGPRILRTETASAAALAMV 234
>gi|134094087|ref|YP_001099162.1| 16S ribosomal RNA methyltransferase RsmE [Herminiimonas
arsenicoxydans]
gi|133737990|emb|CAL61035.1| conserved hypothetical protein [Herminiimonas arsenicoxydans]
Length = 241
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 108/244 (44%), Gaps = 18/244 (7%)
Query: 44 IPRFFSQG----GIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRID--RTG 97
+PRF+ G V + H +V+RLS D + LFNG+GG I I+ R
Sbjct: 1 MPRFYCPQALVIGAVVTLPEHVAHHIQVIRLSAGDAITLFNGEGGEYTATISTIEKKRVT 60
Query: 98 LDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
++ E ++ LP + + A + + DW++EK ELGA ++ PL ++ R
Sbjct: 61 AEIKIFEPREVELP----YAITLAQALPEASKMDWIIEKAVELGAHALQPLASQ-RCVVR 115
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI--A 215
+ + G I ++ G RL L P + +Q L +
Sbjct: 116 LSAERAAKKMQHWQGIIIAASEQSGRNRL--TTLAEPADFNQ---WATQQDLHVRIMLSP 170
Query: 216 EATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIAL 275
A ++ + S +++GPEG FTEKE + + GA + +GP LR ETA +A
Sbjct: 171 RAEQSLSDWARHHPPQSVALMIGPEGGFTEKEETQAIANGALMLSMGPRVLRTETAGMAA 230
Query: 276 LATL 279
+A L
Sbjct: 231 IAAL 234
>gi|256004286|ref|ZP_05429268.1| protein of unknown function DUF558 [Clostridium thermocellum DSM
2360]
gi|419722184|ref|ZP_14249332.1| Ribosomal RNA small subunit methyltransferase E [Clostridium
thermocellum AD2]
gi|419724282|ref|ZP_14251350.1| Ribosomal RNA small subunit methyltransferase E [Clostridium
thermocellum YS]
gi|255991720|gb|EEU01820.1| protein of unknown function DUF558 [Clostridium thermocellum DSM
2360]
gi|380772288|gb|EIC06140.1| Ribosomal RNA small subunit methyltransferase E [Clostridium
thermocellum YS]
gi|380781755|gb|EIC11405.1| Ribosomal RNA small subunit methyltransferase E [Clostridium
thermocellum AD2]
Length = 254
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 118/248 (47%), Gaps = 20/248 (8%)
Query: 44 IPRFFSQ-----GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGG--LIEGCIQRIDRT 96
+PRFF + G + + G++F H+ KVLRL D+V + +G+G L+E I++I+
Sbjct: 8 MPRFFVRKSDIYGDFINISGEDFNHIKKVLRLGKGDKVTVCDGEGTDYLVE--IEKIEDA 65
Query: 97 GLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHL-- 154
++ +E +K + +F G K + D++++K ELG + P++TE +
Sbjct: 66 VINTRIVEAMKNATEPPLKVTLFQ--GLPKSDKMDYIIQKAVELGINEIVPVITERTVVK 123
Query: 155 QSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI 214
K G + N I+ A + + V P+ L S LA +
Sbjct: 124 MDEKSGSKKYERWN----RISMEAAKQCNRGIIPKV-GIPLSFKEALDNAKGSSLALIPY 178
Query: 215 AEATPL--VTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
+ T + LSSS + + +GPEG FTE E+ V G V LGP LR ETA
Sbjct: 179 EKETGIKLKEVLSSSSSVEKVSVFIGPEGGFTETEIETAVSCGICPVTLGPRILRTETAG 238
Query: 273 IALLATLM 280
IA+L+ LM
Sbjct: 239 IAVLSILM 246
>gi|125973834|ref|YP_001037744.1| hypothetical protein Cthe_1319 [Clostridium thermocellum ATCC
27405]
gi|281417994|ref|ZP_06249014.1| protein of unknown function DUF558 [Clostridium thermocellum JW20]
gi|385778290|ref|YP_005687455.1| hypothetical protein Clo1313_0936 [Clostridium thermocellum DSM
1313]
gi|125714059|gb|ABN52551.1| protein of unknown function DUF558 [Clostridium thermocellum ATCC
27405]
gi|281409396|gb|EFB39654.1| protein of unknown function DUF558 [Clostridium thermocellum JW20]
gi|316939970|gb|ADU74004.1| protein of unknown function DUF558 [Clostridium thermocellum DSM
1313]
Length = 247
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 118/248 (47%), Gaps = 20/248 (8%)
Query: 44 IPRFFSQ-----GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGG--LIEGCIQRIDRT 96
+PRFF + G + + G++F H+ KVLRL D+V + +G+G L+E I++I+
Sbjct: 1 MPRFFVRKSDIYGDFINISGEDFNHIKKVLRLGKGDKVTVCDGEGTDYLVE--IEKIEDA 58
Query: 97 GLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHL-- 154
++ +E +K + +F G K + D++++K ELG + P++TE +
Sbjct: 59 VINTRIVEAMKNATEPPLKVTLFQ--GLPKSDKMDYIIQKAVELGINEIVPVITERTVVK 116
Query: 155 QSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI 214
K G + N I+ A + + V P+ L S LA +
Sbjct: 117 MDEKSGSKKYERWN----RISMEAAKQCNRGIIPKV-GIPLSFKEALDNAKGSSLALIPY 171
Query: 215 AEATPL--VTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
+ T + LSSS + + +GPEG FTE E+ V G V LGP LR ETA
Sbjct: 172 EKETGIKLKEVLSSSSSVEKVSVFIGPEGGFTETEIETAVSCGICPVTLGPRILRTETAG 231
Query: 273 IALLATLM 280
IA+L+ LM
Sbjct: 232 IAVLSILM 239
>gi|399927286|ref|ZP_10784644.1| 16S ribosomal RNA methyltransferase RsmE [Myroides injenensis
M09-0166]
Length = 244
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 106/230 (46%), Gaps = 15/230 (6%)
Query: 57 EGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQ-RIDRTGL-DVVALEDLKLVLPQHT 114
+ DE H+ +VLR D + + +GKG L I D+ L ++V+ ED P
Sbjct: 28 DKDESKHIVRVLRRKIGDTLHVTDGKGTLFTTKISLDSDKNCLTEIVSFEDQA---PTPF 84
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
+ ++ A T R +W +EK TE+G +TP++ E H + + + F I
Sbjct: 85 RLHIAVA-PTKMNERYEWFLEKATEIGIHEITPIICE-HSERKVVKTERFER-------I 135
Query: 175 ANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGL 234
+SA Q +H +LN P+ + L + +L E + S + L
Sbjct: 136 IHSAMKQSLQ-MHLPILNEPISLKDFLNQNHEGELYIAHCEEDNAKILLKDSIVPNKNYL 194
Query: 235 IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSD 284
++VGPEGDF+ E+ +E G V LG RLR ETA + + + + ++
Sbjct: 195 LLVGPEGDFSPSEIKLALEKGYKPVSLGHTRLRTETAALVAVHSFVFVNE 244
>gi|300853987|ref|YP_003778971.1| hypothetical protein CLJU_c08010 [Clostridium ljungdahlii DSM
13528]
gi|300434102|gb|ADK13869.1| conserved hypothetical protein [Clostridium ljungdahlii DSM 13528]
Length = 251
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 107/232 (46%), Gaps = 15/232 (6%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQ 115
+ G++ H+ KVLRL D++ + N G G I++ID+ + V +E+L L ++
Sbjct: 18 IRGEDVKHIRKVLRLKCGDKININNCNGKEFLGAIEKIDKDEVVVNIIEELTLY--NESK 75
Query: 116 WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI--GDNGFLSCNFYYGF 173
++ G K G+ D +V+K ELG +TP++T SR + D+G +
Sbjct: 76 IKIYLFQGLPKSGKMDLIVQKAVELGVYEITPVVT-----SRVVVKNDSGEFKKVDRWNK 130
Query: 174 IANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT-----PLVTALSSSR 228
IA A + + V N P+ LL + V + +V ++
Sbjct: 131 IAKEACKQCKRSIIPKV-NVPISFKELLSEGEYMDVIVVPYENESNTGIKKIVNSIKDKS 189
Query: 229 NESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
N I++GPEG F E+E++++ + LGP LR ETA ++ +M
Sbjct: 190 NLEKIAIVIGPEGGFEEQEIDELKNINSHIATLGPRILRTETAGFVCISLIM 241
>gi|423134107|ref|ZP_17121754.1| RsmE family RNA methyltransferase [Myroides odoratimimus CIP
101113]
gi|371646864|gb|EHO12374.1| RsmE family RNA methyltransferase [Myroides odoratimimus CIP
101113]
Length = 234
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 105/229 (45%), Gaps = 14/229 (6%)
Query: 57 EGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQW 116
+ DE H+ KVLR D + + NGKG L I +D V + D + P T +
Sbjct: 19 DKDESKHIIKVLRRKMGDLLYVTNGKGTLFTTKIT-LDSDKKCVTEIIDSEDQAP--TPF 75
Query: 117 NVFAAFGTLK-GGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
+ A K R +W +EK TE+G +TP++ + H + + + F I
Sbjct: 76 RLHLAVAPTKMNERYEWFLEKATEIGIHEITPIICD-HSERKIVKTERFEK-------II 127
Query: 176 NSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLI 235
SA Q H +LN P+ + L Q++ ++A E T V S + L+
Sbjct: 128 QSAMKQSLQ-YHLPILNEPISLKDFLNQDHQAE-KYIAHCEETEKVLLKDSIDIHKNYLL 185
Query: 236 IVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSD 284
+VGPEGDF+ E+N + G V LG RLR ETA + + + + ++
Sbjct: 186 LVGPEGDFSTNEINLALAKGYRPVSLGHTRLRTETAALVAVHSFVFTNE 234
>gi|110638000|ref|YP_678207.1| 16S ribosomal RNA methyltransferase RsmE [Cytophaga hutchinsonii
ATCC 33406]
gi|110280681|gb|ABG58867.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406]
Length = 234
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 100/230 (43%), Gaps = 17/230 (7%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQ 115
++ E H+ KVLRL D + + NG G ++ I + D +E+ KL + +
Sbjct: 15 LDEQESVHVVKVLRLKEGDAITVTNGNGIVVSAQITKADHRKCGYKIIEEQKL--NKRSA 72
Query: 116 WNVFAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
+ A K R +WLVEKCTE G + + +LTE H + + N +
Sbjct: 73 ARIHIAIAPTKNIDRMEWLVEKCTEFGIDAFSFVLTE-HSERK----------NLPVAKL 121
Query: 175 ANSAFVYGGQRLHEMV--LNPPMKIDGLLPL-VSQSKLAFVAIAEATPLVTALSSSRNES 231
+AF Q + + + L S +A + P T L +
Sbjct: 122 EKTAFAAIKQSGQPFLPHFSELLSFTAFLQSDFSDYDYKLIACLDEAPKSTILKLVQPAK 181
Query: 232 SGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
S L+++GPEGDFT++EV VE G + LG LR ETA IA L L
Sbjct: 182 SCLVLIGPEGDFTQQEVRSAVEKGFVKISLGNSILRTETAAIASCHILNL 231
>gi|399001999|ref|ZP_10704701.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM18]
gi|398126109|gb|EJM15556.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM18]
Length = 239
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 105/220 (47%), Gaps = 18/220 (8%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR++ D V+LF+G G G + + + VV D + V
Sbjct: 26 YISRVLRMAEGDAVQLFDGSGHEFRGTLMEVGKK--RVVVQIDESFTGQVESSLAVHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLT---ELHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G +G R DW ++K TELG +TP+ T E+ L+ + D + ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVSEITPIFTDRCEVRLKDER-ADKRLM----HWRQVAISAC 138
Query: 180 VYGGQRLHEMVLNPPMKI-DGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVG 238
G R V++PP+ + D L ++ KL +AE PLV S SS ++G
Sbjct: 139 EQCG-RSRVPVIHPPLLLADWLKQTAAELKLVLHPVAE--PLV----SHAKPSSLAFLIG 191
Query: 239 PEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
PEG ++ EV + G A LGP LR ETA + LA
Sbjct: 192 PEGGLSDVEVEQAKAGGFHAARLGPRVLRTETAPVVALAV 231
>gi|209521966|ref|ZP_03270631.1| protein of unknown function DUF558 [Burkholderia sp. H160]
gi|209497600|gb|EDZ97790.1| protein of unknown function DUF558 [Burkholderia sp. H160]
Length = 232
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 9/225 (4%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
D+ VLRL D + LFNG+GG + ++R V + D + V + +
Sbjct: 6 DDVVRHVTVLRLQPGDSLVLFNGQGGEYGAELVEVERRSARV-KIRDFRAV-EVEPPYRL 63
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSA 178
A G G + DWL+EK ELGA PL T + R G+ + G + S
Sbjct: 64 TLAQGIAGGDKMDWLIEKAVELGASGFVPLAT-VRSVVRLTGERAQRRQQHWQGVVRASC 122
Query: 179 FVYGGQRLHEMVLNPPMKIDGLLPLVSQ----SKLAFVAIAEATPLVTALSSSRNESSGL 234
G RL E++ P L +S+ +L + A+ AL +
Sbjct: 123 EQCGRNRLPEVM--PVQDFGAWLDTLSREPAPDELRLLLSPRASISFAALPDAPPRGRVT 180
Query: 235 IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
+++GPEG + E V G TA+GLGP LR ETA IA+LA L
Sbjct: 181 LLIGPEGGLSADEEAAAVAQGFTALGLGPRVLRTETAGIAVLAAL 225
>gi|431798399|ref|YP_007225303.1| RsmE family RNA methyltransferase [Echinicola vietnamensis DSM
17526]
gi|430789164|gb|AGA79293.1| RNA methyltransferase, RsmE family [Echinicola vietnamensis DSM
17526]
Length = 235
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 110/237 (46%), Gaps = 14/237 (5%)
Query: 50 QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLV 109
+ G + + +E H+ KVLR + D V + +GKG L I + D ++ +E
Sbjct: 11 ESGNITLHPEESKHLVKVLRKNVGDEVFMTDGKGHLFSCQITKGDLKRAELSIIEKKATP 70
Query: 110 LPQHTQWNVFAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCN 168
LP H ++ A K R +W++EK TE+G +T + T + FL +
Sbjct: 71 LPDH---HIHLAIAPTKNTDRMEWMLEKITEIGFSKLTFIKTS-------NSERSFLKPD 120
Query: 169 FYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKL-AFVAIAEATPLVTALSSS 227
+ ++ + H +++P + LL +Q L F+A + +
Sbjct: 121 RLEKKMVSAC--KQSLKTHFPIIDPLTSFEELLDKHAQDDLQKFIAYVDENHRHHLFEVA 178
Query: 228 RNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSD 284
+ + + LI++GPEGDF+ +E+N G V LG RLR ETA +A + TL L ++
Sbjct: 179 KAKGAYLILIGPEGDFSPEEINLAKAKGFIPVSLGHSRLRTETAGLAAVHTLSLLNN 235
>gi|149372812|ref|ZP_01891833.1| hypothetical protein SCB49_12654 [unidentified eubacterium SCB49]
gi|149354509|gb|EDM43074.1| hypothetical protein SCB49_12654 [unidentified eubacterium SCB49]
Length = 236
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 106/254 (41%), Gaps = 37/254 (14%)
Query: 47 FFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLI---------EGCIQR 92
F+ QG + + + DE H+ KVLR D++ + NG+G L + CI
Sbjct: 4 FYQQGILPTATEIVFDKDESRHIHKVLRKKEGDQLHITNGEGYLFTTEILSSNPKSCIAT 63
Query: 93 IDRTGLDVVALEDLKLVLPQHTQWNVFAAFGTLK-GGRADWLVEKCTELGAQSVTPLLTE 151
+ T L+ Q + + A K R +W +EK TE+G +TP++ +
Sbjct: 64 VTETSLE------------QPLPYQLHMAVAPTKLNDRFEWFLEKATEIGITEITPIICD 111
Query: 152 LHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAF 211
H + + I + + S Y + LN + + L
Sbjct: 112 -HSERKVIKKERYEK--IIVSAMKQSLSCYLPK------LNDAITFTAFMKLSHDENFKS 162
Query: 212 VAIAEATPLVTALSSS-RNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
+A E P AL + + L+++GPEGDF++KE+ + + T V LG RLR ET
Sbjct: 163 IAHCENEPTKKALKNCIKPNFDSLLLIGPEGDFSKKEIKQAKDKDFTEVSLGDRRLRTET 222
Query: 271 ATIALLATLMLCSD 284
A I T + +D
Sbjct: 223 AAIVACHTFSVLND 236
>gi|409203612|ref|ZP_11231815.1| hypothetical protein PflaJ_19906 [Pseudoalteromonas flavipulchra
JG1]
Length = 244
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 112/234 (47%), Gaps = 20/234 (8%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVV--ALEDLKLVLP 111
V ++ D H+ +VLR++T D+V LFNG+GG + + + + V + ED + P
Sbjct: 18 VTLDDDAAGHIGRVLRMTTKDKVSLFNGQGGEYLCQLSEVGKKKVVAVPESFEDKNVESP 77
Query: 112 QHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR---KIGDNGFLSCN 168
+ G +G + D+ ++K ELG +TPL T +R K+ +
Sbjct: 78 ----LAIHLGQGISRGDKMDFTIQKSVELGVSEITPLFT-----TRCGVKLSGERLAKKH 128
Query: 169 FYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSR 228
+ IA +A G R ++NPPM++ L S +L A + L S+
Sbjct: 129 QQWQKIAIAAAEQSG-RNTITIINPPMELSEWLAQQS-DELKITLHPRAEHSIKTLPYSQ 186
Query: 229 NESSGL-IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
SG+ +VGPEG FT++E++ + V LGP LR ETA + +L+ L L
Sbjct: 187 ---SGIRFLVGPEGGFTDEELDATAQQRFVDVRLGPRVLRTETAALTVLSALQL 237
>gi|443244375|ref|YP_007377600.1| protein containing DUF558 [Nonlabens dokdonensis DSW-6]
gi|442801774|gb|AGC77579.1| protein containing DUF558 [Nonlabens dokdonensis DSW-6]
Length = 235
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 104/228 (45%), Gaps = 18/228 (7%)
Query: 53 IVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRI--DRTGLDVVALEDLKLVL 110
++ ++ ++ HMTKVLR D+V + +GKG L +G I + ++ +D+ +
Sbjct: 15 LLELDKEQSRHMTKVLRKKVGDQVHITDGKGNLYDGKISLVTSNKCHIDIAFAKAYPKPF 74
Query: 111 PQ-HTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNF 169
P+ H A T R +W +EK TE+G Q +TPLL + H + +KI F
Sbjct: 75 PRLH-----IAIAPTKMNDRMEWFLEKATEMGIQKITPLLCD-HSERKKINVARFEK--- 125
Query: 170 YYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRN 229
I SA Q H VL + + K VA E T + +
Sbjct: 126 ----ILISALQQSYQ-FHLPVLEELTSSQDFIKRKIEGKKC-VAHCEETEKIQLANFIET 179
Query: 230 ESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
++ +I+GPEGDF+ +E+ ++ G LG RLR ETA + A
Sbjct: 180 KADFTVIIGPEGDFSNREIELAIKNGFQPTSLGEKRLRTETAGVYTAA 227
>gi|310826526|ref|YP_003958883.1| hypothetical protein [Eubacterium limosum KIST612]
gi|308738260|gb|ADO35920.1| hypothetical protein ELI_0908 [Eubacterium limosum KIST612]
Length = 245
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 115/255 (45%), Gaps = 39/255 (15%)
Query: 46 RFFS-----QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV 100
RFF + G+V +EG++F H+TKVLRL ++ +E+ +G+G C++ + + L
Sbjct: 3 RFFVSPGQIEDGLVTIEGEDFKHITKVLRLRDDEAIEVCDGRGTDYIACVETVGKDSLKG 62
Query: 101 VALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIG 160
LE + + V G KG + + +++KC E GA S+ P +E + K+G
Sbjct: 63 RILES-RPSRGETDSLRVTLFQGVPKGQKMESVIQKCVEAGAASIVPFTSERTVV--KLG 119
Query: 161 DNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQ-SKLAFVAIAEATP 219
D + QR+ + G++P V++ + L+ VA
Sbjct: 120 DKEEKKTRRW-------------QRVAYEAAKQSKR--GIIPHVAEVTTLSAVADTLDNY 164
Query: 220 LVTALSSSRNESSGL---------------IIVGPEGDFTEKEVNKIVEAGATAVGLGPH 264
+ ++ E S L +I+GPEG F EV I EAG +V LG
Sbjct: 165 DLVLIAYEGEEESSLKDVISCLEFDPERIAVIIGPEGGFAPAEVAMIEEAGGYSVSLGRR 224
Query: 265 RLRVETATIALLATL 279
LR ETA + LLA L
Sbjct: 225 ILRTETAGVVLLAQL 239
>gi|388542922|ref|ZP_10146214.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas sp. M47T1]
gi|388279008|gb|EIK98578.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas sp. M47T1]
Length = 239
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 108/217 (49%), Gaps = 12/217 (5%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +VLR++ D V+LF+G G G + + + + V L++ P+ +
Sbjct: 26 YIGRVLRMAEGDAVQLFDGSGQEYRGALLEVGKKRVRV-QLDEAFAGQPE-SSLKTHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELGA +TP+++E ++ D ++ IA SA
Sbjct: 84 GLSRGERMDWAIQKATELGASEITPIVSERC--EVRLKDERAEKRQAHWQQIAVSACEQC 141
Query: 183 GQRLHEMVLNPPMKI-DGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEG 241
G R V++PP+ + D L ++ KL +AE PLV S +S ++GPEG
Sbjct: 142 G-RSTVPVIHPPLVLADWLKACDAELKLVLHPVAE--PLV----SHEKPASLAFLIGPEG 194
Query: 242 DFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
++ EV++ AG + LGP LR ETA + LA
Sbjct: 195 GLSDAEVSQAQAAGFHSARLGPRVLRTETAPVVALAV 231
>gi|344203608|ref|YP_004788751.1| ribosomal RNA small subunit methyltransferase E [Muricauda
ruestringensis DSM 13258]
gi|343955530|gb|AEM71329.1| Ribosomal RNA small subunit methyltransferase E [Muricauda
ruestringensis DSM 13258]
Length = 235
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 103/226 (45%), Gaps = 11/226 (4%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
DE H+ +VLR S D V + NGKG L E I D+ K + P+ + ++
Sbjct: 21 DESKHIVRVLRKSEGDIVHITNGKGYLFEAEILEPDQKRCRARITSQRKSI-PKRYKLHL 79
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSA 178
A T R +W +EK TE+G +TP++ + H + + I + +A
Sbjct: 80 VVA-PTKMNDRYEWFLEKATEIGVDEITPIICD-HSERKTIKLERMER-------VLQAA 130
Query: 179 FVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVG 238
Q + + NPP+ L + L F+A + + ++ I++G
Sbjct: 131 MKQSLQTVLPQI-NPPISCRDFLESDTTVGLKFIAHCQNGEKMELKRRVIADNDVTILIG 189
Query: 239 PEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSD 284
PEGDF+++E++ E G + LG +RLR ETA I T+ + ++
Sbjct: 190 PEGDFSKEEIDLAKEKGYIPIALGRNRLRTETAAIVACTTVAMINN 235
>gi|408375430|ref|ZP_11173099.1| hypothetical protein A11A3_15012 [Alcanivorax hongdengensis A-11-3]
gi|407764725|gb|EKF73193.1| hypothetical protein A11A3_15012 [Alcanivorax hongdengensis A-11-3]
Length = 238
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 106/229 (46%), Gaps = 23/229 (10%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVAL----EDLKLVLPQHTQWNV 118
H+ KVLR++ D + +FNG+GG I I + ++V L ED + L V
Sbjct: 25 HVGKVLRMAEGDELVVFNGEGGEWTARITAISKKAVEVEPLQFHHEDRQAPL------AV 78
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSA 178
A +KG R D+ ++K TELGA + L TE + R G+ + I ++
Sbjct: 79 TVALPMIKGDRMDYAIQKATELGAARIVVLDTE-RCEVRLKGERQDKKLAHWQQVIISAC 137
Query: 179 FVYGGQRLHEMVLNPPMKIDGLLPLVS---QSKLAFVAIAEATPLVTALSSSRNESSGLI 235
G LN P +++G+LPL Q A IA ++ + + +
Sbjct: 138 EQCG--------LNRPPQLEGVLPLADWLRQPLPALRLIAHPGEQPFEPATLKAHMALAL 189
Query: 236 IVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM-LCS 283
+ GPEG F++ E+ +AG T LG LR ETA +ALLA L CS
Sbjct: 190 LTGPEGGFSDDELAAAGQAGFTPFALGNRVLRAETAPVALLAALWAWCS 238
>gi|373110520|ref|ZP_09524789.1| RsmE family RNA methyltransferase [Myroides odoratimimus CCUG
10230]
gi|423130408|ref|ZP_17118083.1| RsmE family RNA methyltransferase [Myroides odoratimimus CCUG
12901]
gi|423326825|ref|ZP_17304633.1| RsmE family RNA methyltransferase [Myroides odoratimimus CCUG 3837]
gi|371643162|gb|EHO08720.1| RsmE family RNA methyltransferase [Myroides odoratimimus CCUG
10230]
gi|371644991|gb|EHO10519.1| RsmE family RNA methyltransferase [Myroides odoratimimus CCUG
12901]
gi|404607395|gb|EKB06897.1| RsmE family RNA methyltransferase [Myroides odoratimimus CCUG 3837]
Length = 234
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 104/229 (45%), Gaps = 14/229 (6%)
Query: 57 EGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQW 116
+ DE H+ KVLR D + + NGKG L I +D V + D + P T +
Sbjct: 19 DKDESKHIIKVLRRKMGDLLYVTNGKGTLFTTKIT-LDSDKKCVTEIIDSEDQAP--TPF 75
Query: 117 NVFAAFGTLK-GGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
+ A K R +W +EK TE+G +TP++ + H + + + F I
Sbjct: 76 RLHLAVAPTKMNERYEWFLEKATEIGIHEITPIICD-HSERKIVKTERFEK-------II 127
Query: 176 NSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLI 235
SA Q H +LN P+ + L Q + ++A E T V S + L+
Sbjct: 128 QSAMKQSLQ-YHLPILNDPISLKDFLNQDHQGE-KYIAHCEETEKVLLKDSIDIHKNYLL 185
Query: 236 IVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSD 284
+VGPEGDF+ E+N + G V LG RLR ETA + + + + ++
Sbjct: 186 LVGPEGDFSTNEINLALAKGYRPVSLGHTRLRTETAALVAVHSFVFTNE 234
>gi|452749826|ref|ZP_21949583.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas stutzeri
NF13]
gi|452006135|gb|EMD98410.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas stutzeri
NF13]
Length = 238
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 104/216 (48%), Gaps = 11/216 (5%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLRLS V+LF+G G G + + + + +V L + +P+ + +
Sbjct: 26 YISRVLRLSAGSAVQLFDGSGSEFRGELLEVGKKSV-IVELHERVTGMPE-SPLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TP+++E ++ D ++ IA SA
Sbjct: 84 GLSRGERMDWAIQKATELGVTQITPIVSER--CEVRLSDERADKRLAHWRQIAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G+ + V++ P+ + LP+ + KL +AE L+S + ++GPEG
Sbjct: 142 GRSVLP-VIHSPVSLRDWLPVEADLKLVLHPVAEP------LTSHARPQTLAFLIGPEGG 194
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
+E EV + G LGP LR ETA + L+
Sbjct: 195 LSESEVEQAANQGFQPARLGPRVLRTETAPVVALSV 230
>gi|237798149|ref|ZP_04586610.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331021001|gb|EGI01058.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 239
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 116/238 (48%), Gaps = 14/238 (5%)
Query: 44 IPRFFSQGGIVRVEGD----EFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
+ RFF++ + E + + ++++VLR++ D ++LF+G G G + + + +
Sbjct: 3 LSRFFTETPLSLGEHELPEAQVHYISRVLRMTEGDALQLFDGSGLEFRGTLLEVGKKRVR 62
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
V E + + + G +G R DW ++K TELG +TP+++E ++
Sbjct: 63 VQMTE--RFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERC--EVRL 118
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
D ++ IA SA G+ + V++PPM + + L +++ L V P
Sbjct: 119 KDERAEKRQAHWQQIAISACEQCGRSVVP-VIHPPMPLADWIKL-TEADLKLVL----HP 172
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
+ L+S +S ++GPEG + E+++ +AG A LGP LR ETA + L+
Sbjct: 173 VAEPLTSHDKPASLAFLIGPEGGLNDAEIDQAQDAGFHAARLGPRVLRTETAPVVALS 230
>gi|422643458|ref|ZP_16706597.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
maculicola str. ES4326]
gi|330957011|gb|EGH57271.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 239
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 105/215 (48%), Gaps = 10/215 (4%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR++ D ++LF+G G G + + + + V E + + +
Sbjct: 26 YISRVLRMTEGDALQLFDGSGLEFRGTLLEVGKKRVRVQLTESFAGQV--ESGLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TP+++E ++ D ++ IA SA
Sbjct: 84 GLSRGERMDWAIQKATELGVSEITPIISERC--EVRLKDERAEKRQAHWQQIAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G+ + V++PPM + + L +++ L V P+ L+S +S ++GPEG
Sbjct: 142 GRSVVP-VIHPPMPLADWIRL-TEADLKLVL----HPVAEPLTSHAKPASLAFLIGPEGG 195
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
E EV++ AG A LGP LR ETA + L+
Sbjct: 196 LNEAEVDQAQTAGFHAARLGPRVLRTETAPVVALS 230
>gi|213971885|ref|ZP_03399986.1| conserved hypothetical protein TIGR00046 [Pseudomonas syringae pv.
tomato T1]
gi|301385288|ref|ZP_07233706.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
tomato Max13]
gi|302061292|ref|ZP_07252833.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
tomato K40]
gi|302131396|ref|ZP_07257386.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|213923369|gb|EEB56963.1| conserved hypothetical protein TIGR00046 [Pseudomonas syringae pv.
tomato T1]
Length = 239
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 105/215 (48%), Gaps = 10/215 (4%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR++ D ++LF+G G G + + + + V E + + +
Sbjct: 26 YISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKRVRVQLTE--RFAGQVESGLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TP+++E ++ D ++ IA SA
Sbjct: 84 GLSRGERMDWAIQKATELGVSEITPIVSERC--EVRLKDERAEKRQAHWQQIAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G+ + V++PPM + + L +++ L V P+ L+S +S ++GPEG
Sbjct: 142 GRSVVP-VIHPPMPLADWIKL-TEADLKLVL----HPVAEPLTSHAKPASLAFLIGPEGG 195
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
+ EV++ AG A LGP LR ETA + L+
Sbjct: 196 LNDAEVDQAQNAGFHAARLGPRVLRTETAPVVALS 230
>gi|28872189|ref|NP_794808.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
tomato str. DC3000]
gi|28855443|gb|AAO58503.1| conserved hypothetical protein TIGR00046 [Pseudomonas syringae pv.
tomato str. DC3000]
Length = 239
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 105/215 (48%), Gaps = 10/215 (4%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR++ D ++LF+G G G + + + + V E + + +
Sbjct: 26 YISRVLRMTEGDALQLFDGSGQEFSGTLLEVGKKRVRVQLTE--RFAGQVESGLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TP+++E ++ D ++ IA SA
Sbjct: 84 GLSRGERMDWAIQKATELGVSEITPIVSERC--EVRLKDERAEKRQAHWQQIAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G+ + V++PPM + + L +++ L V P+ L+S +S ++GPEG
Sbjct: 142 GRSVVP-VIHPPMPLADWIKL-TEADLKLVL----HPVAEPLTSHAKPASLAFLIGPEGG 195
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
+ EV++ AG A LGP LR ETA + L+
Sbjct: 196 LNDAEVDQAQNAGFHAARLGPRVLRTETAPVVALS 230
>gi|189219856|ref|YP_001940497.1| hypothetical protein Minf_1845 [Methylacidiphilum infernorum V4]
gi|189186714|gb|ACD83899.1| Uncharacterized conserved protein [Methylacidiphilum infernorum V4]
Length = 217
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 104/220 (47%), Gaps = 16/220 (7%)
Query: 68 LRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAFGTLKG 127
+R D +E+F+GKG E I++I+ + V L ++K P V LK
Sbjct: 1 MRHKIGDLIEVFDGKGSSWEAKIEKIENHQVFVSLLREIKEDSPSKKPLLVLIQ-SVLKN 59
Query: 128 GRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLH 187
WL++K TE+G + P++++ L + + G L + N + ++ H
Sbjct: 60 KAMHWLLQKVTEIGVDRIIPVISKRSLSAVEEGQQ--LKEKKW-----NEILIAAAKQSH 112
Query: 188 EMVLNPPMKIDGLLPLVSQ---SKLAFVAI--AEATPL--VTALSSSRNESSGLIIVGPE 240
L KI L + + S L VA EA L V SSRN SS +I++GPE
Sbjct: 113 RRKLPELFKISLLADALKEGFPSSLKLVAFLGKEARSLKEVMQCYSSRNVSSVVILIGPE 172
Query: 241 GDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
GDFT +E N ++ G V LG LR ETA + LA++M
Sbjct: 173 GDFTGEEKNMVLNQGFIPVSLGNQVLRSETAAL-FLASVM 211
>gi|398900592|ref|ZP_10649620.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM50]
gi|398180992|gb|EJM68566.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM50]
Length = 239
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 106/220 (48%), Gaps = 18/220 (8%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR++ D V+LF+G G G + + + VV D + V
Sbjct: 26 YISRVLRMAEGDAVQLFDGSGHEFRGTLAEVGKK--RVVVQIDESFAGQVESSLAVHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLT---ELHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G +G R DW ++K TELG +TP+ T E+ L+ + D + ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVSEITPIFTDRCEVRLKDER-ADKRLM----HWRQVAISAC 138
Query: 180 VYGGQRLHEMVLNPPMKI-DGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVG 238
G R V++PP+ + D L ++ KL +AE PLV S ++ ++G
Sbjct: 139 EQCG-RSRVPVIHPPLLLADWLKQTEAELKLVLHPVAE--PLV----SHAKPATLAFLIG 191
Query: 239 PEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
PEG ++ EV + AG A LGP LR ETA + LA
Sbjct: 192 PEGGLSDAEVEQAKGAGFHAARLGPRVLRTETAPVVALAV 231
>gi|386816417|ref|ZP_10103635.1| 16S rRNA m(3)U-1498 methyltransferase [Thiothrix nivea DSM 5205]
gi|386420993|gb|EIJ34828.1| 16S rRNA m(3)U-1498 methyltransferase [Thiothrix nivea DSM 5205]
Length = 243
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 115/245 (46%), Gaps = 20/245 (8%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGG----LIEGCIQRID 94
IPRF+ G ++ + + F H +VLRL+ + + LFNG GG +E +R
Sbjct: 3 IPRFYLPLELHAGQVLELPPETFRHAIQVLRLNAGEPLILFNGAGGEYLARVETVSKRAA 62
Query: 95 RTGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHL 154
+D + + + +LP + A +K + D+ ++K ELG + PL+T+ +
Sbjct: 63 TARIDSFSPGNPESLLP------LTLAQAIIKPDKMDFALQKAVELGVACIQPLITQRSV 116
Query: 155 QSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI 214
++G ++ I +A G+ MV P + L + ++L +
Sbjct: 117 I--RVGKEKADKKTQHWEGIVQAACEQSGRTRLPMVDAPQTLANWLETPTAGTRL--ILA 172
Query: 215 AEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274
P + AL + L+ GPEG FT++EV + + AG A+ LGP LR ETA+IA
Sbjct: 173 PGDYPRINALPADLPTPISLL-TGPEGGFTDEEVAQCLHAGMMAIALGPRILRAETASIA 231
Query: 275 LLATL 279
LA L
Sbjct: 232 ALALL 236
>gi|398893370|ref|ZP_10646084.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM55]
gi|398184270|gb|EJM71726.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM55]
Length = 239
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 105/219 (47%), Gaps = 16/219 (7%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +VLR++ D ++LF+G G + + + VV D + +
Sbjct: 26 YIGRVLRMAEGDALQLFDGSGHEFRATLVEVGKK--RVVVQIDESFAGQIESPLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G +G R DW ++K TELGA +TP+ TE + L+ + D L ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGATEITPIFTERCEVRLKDER-ADKRLL----HWRQVAISAC 138
Query: 180 VYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGP 239
G R V++PPM + L +Q++L V A PLV S S+ ++GP
Sbjct: 139 EQCG-RSRVPVIHPPMLLADWLKQ-AQAELKLVLHPVAEPLV----SHAKPSNLAFLIGP 192
Query: 240 EGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
EG ++ EV++ +G A LGP LR ETA + LA
Sbjct: 193 EGGLSDAEVDQAKASGFHAARLGPRVLRTETAPVVALAV 231
>gi|255034262|ref|YP_003084883.1| hypothetical protein Dfer_0449 [Dyadobacter fermentans DSM 18053]
gi|254947018|gb|ACT91718.1| protein of unknown function DUF558 [Dyadobacter fermentans DSM
18053]
Length = 235
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 107/225 (47%), Gaps = 14/225 (6%)
Query: 53 IVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRID--RTGLDVVALEDLKLVL 110
I ++ +E H +KVLRL + D +++ NGKG L++ C I R G +V+ +
Sbjct: 11 IFELDEEEARHSSKVLRLGSGDIIQVTNGKG-LLQKCRLNIQGRRVGYEVIESKT----- 64
Query: 111 PQHTQWNVFAAFG-TLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNF 169
+ + V A T K R +W+VEK TE+G + + ++TE H + L+
Sbjct: 65 AERRPFAVHMAIAPTRKAERNEWMVEKMTEIGVERIDFVVTE-HTNPETLNRVVNLT--- 120
Query: 170 YYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRN 229
IA +A + Q+ + V+ K + + + E + S +
Sbjct: 121 RLNRIAAAA-MKQSQQFYMPVITVNNKYEPFIKNAGDEVRLIAYVPEQNTVEHVFSKIKK 179
Query: 230 ESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274
+ +++GPEGDF+ KEV ++AG V LGP RLR ETA +A
Sbjct: 180 GADTTLLIGPEGDFSPKEVELALQAGFQTVSLGPTRLRTETAAVA 224
>gi|366164498|ref|ZP_09464253.1| hypothetical protein AcelC_12591 [Acetivibrio cellulolyticus CD2]
Length = 247
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 115/260 (44%), Gaps = 43/260 (16%)
Query: 44 IPRFFSQGGIV-----RVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF V + G+++ H+ KVLRL + V L +G G I+ +
Sbjct: 1 MPRFFINSKDVFDDNINITGEDYNHIKKVLRLKCEEIVTLSDGIGNEYVAEIKDFGDGFV 60
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQ 155
+E K + ++ G K + D++++K ELG + P+LTE + L
Sbjct: 61 HTKVIESYKNTTEPPIKVTLYQ--GLPKSDKMDFIIQKSVELGISRIVPVLTERTVVRLD 118
Query: 156 SRK-----------IGDNGFLSCNFYYGFIANS----AFVYGGQRLHEMVLNPPMKIDGL 200
S K I CN G I +F +++H++ L+ L
Sbjct: 119 SEKDAAKKCERWNRISQEAAKQCN--RGIIPKIEVPISFKEAIKKVHDVPLS-------L 169
Query: 201 LPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVG 260
+P +SK + I ++ ++ +S + +GPEG FTE+E+ + V G ++V
Sbjct: 170 IPYEKESKNSLKQILKSVGDISEVS---------VFIGPEGGFTEQEIEEAVNCGLSSVT 220
Query: 261 LGPHRLRVETATIALLATLM 280
LGP LR ETA I +L LM
Sbjct: 221 LGPRILRTETAGITVLTILM 240
>gi|418293503|ref|ZP_12905411.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas stutzeri ATCC
14405 = CCUG 16156]
gi|379064894|gb|EHY77637.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas stutzeri ATCC
14405 = CCUG 16156]
Length = 238
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 107/216 (49%), Gaps = 11/216 (5%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLRLS+ V+LF+G G G + + + + V E L +L + +
Sbjct: 26 YISRVLRLSSGSAVQLFDGSGAEFRGELAEVGKKTVTVELQEYLAGML--ESPLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TP+++E ++ D ++ IA SA
Sbjct: 84 GLSRGERMDWAIQKATELGVAQITPIVSERC--EVRLNDERVDKRLAHWRQIAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G+ + ++ + P+ + L L + KL +AE PLV S ++ ++ +I GPEG
Sbjct: 142 GRSVLPLI-HAPVSLRDWLTLEADLKLVLHPVAE--PLV---SHAKPQTLAFLI-GPEGG 194
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
+E EV + + G LGP LR ETA + L+
Sbjct: 195 LSESEVAQAADQGFQPARLGPRVLRTETAPVVALSV 230
>gi|398861321|ref|ZP_10616955.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM79]
gi|398233471|gb|EJN19399.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM79]
Length = 239
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 104/219 (47%), Gaps = 16/219 (7%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR++ D V+LF+G G G + + + VV D + V
Sbjct: 26 YISRVLRMAEGDAVQLFDGSGHEFRGTLAEVGKK--RVVVQIDESFAGQVESSLAVHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLT---ELHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G +G R DW ++K TELG +TP+ T E+ L+ + D + ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVSEITPIFTDRCEVRLKDER-ADKRLM----HWRQVAISAC 138
Query: 180 VYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGP 239
G R V++PP+ + L +Q++L V A PLV S ++ ++GP
Sbjct: 139 EQCG-RSSVPVIHPPLLLADWLKQ-TQAELKLVLHPMAEPLV----SHAKPATLAFLIGP 192
Query: 240 EGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
EG ++ EV + G A LGP LR ETA + LA
Sbjct: 193 EGGLSDAEVEQAKAGGFHAARLGPRVLRTETAPVVALAV 231
>gi|423694049|ref|ZP_17668569.1| 16S rRNA methyltransferase, RsmE family [Pseudomonas fluorescens
SS101]
gi|388000056|gb|EIK61385.1| 16S rRNA methyltransferase, RsmE family [Pseudomonas fluorescens
SS101]
Length = 239
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 106/221 (47%), Gaps = 22/221 (9%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDL--KLVLPQHTQWNVFA 120
++++VLR+ D V+LF+G G G + + + + V E + P H +
Sbjct: 26 YISRVLRMGEGDAVQLFDGSGQEFRGTLLEVGKKRVTVQLTESFAGQAESPLH----IHL 81
Query: 121 AFGTLKGGRADWLVEKCTELGAQSVTPLLT---ELHLQSRKIGDNGFLSCNFYYGFIANS 177
G +G R DW ++K TELG ++TP+ + E+ L+ + D L ++ +A S
Sbjct: 82 GQGLSRGERMDWAIQKATELGVNAITPIFSDRCEVRLKDER-ADKRLL----HWRQVAIS 136
Query: 178 AFVYGGQRLHEMVLNPPMKI-DGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLII 236
A G R V++PP+ + D L + KL +AE P++ S SS +
Sbjct: 137 ACEQCG-RSTVPVIHPPLLLADWLKQTEADLKLVLHPVAE--PMI----SHAKPSSLAFL 189
Query: 237 VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
+GPEG T+ EV AG A LGP LR ETA + LA
Sbjct: 190 IGPEGGLTDNEVETAQSAGFHAARLGPRVLRTETAPVVALA 230
>gi|171909516|ref|ZP_02924986.1| hypothetical protein VspiD_00050 [Verrucomicrobium spinosum DSM
4136]
Length = 253
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 106/235 (45%), Gaps = 12/235 (5%)
Query: 51 GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVL 110
GG + ++GDE H T V+R + D + F+G G+ C RI T V LE ++ +
Sbjct: 18 GGTLVLDGDEARHCTSVMRHTAGDEITTFDG-AGISARC--RIVATTGKTVELEVVETLS 74
Query: 111 PQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFY 170
++ KG +W+VEK ELG ++ P+LT + K+
Sbjct: 75 TPAPAVSISLVQSVPKGSNMEWIVEKAVELGVNAIHPVLTARTVV--KLDKKEAAKKQEK 132
Query: 171 YGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIA--EATPLVTALSSSR 228
+ +A A GQ V++PP ++ + L +A ++ PL L
Sbjct: 133 WQRLALEACKQCGQNWLP-VIHPPAPYAEVMAGLPPHDLRIIAAIQDDSKPLKEILKDRA 191
Query: 229 NE----SSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
+ SS L+ VGPEGDFT E + G + LGP LRVETAT+ L+ L
Sbjct: 192 KQGSVISSTLLCVGPEGDFTPAEYQTARDHGCVPMSLGPIILRVETATMYGLSVL 246
>gi|424925396|ref|ZP_18348757.1| RsmE [Pseudomonas fluorescens R124]
gi|404306556|gb|EJZ60518.1| RsmE [Pseudomonas fluorescens R124]
Length = 239
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 106/219 (48%), Gaps = 16/219 (7%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR++ D V+LF+G G G + + + VV D +L + +
Sbjct: 26 YISRVLRMAEGDAVQLFDGSGHEFRGSLVEVGKK--RVVVQIDEQLAGQIESPLQIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLT---ELHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G +G R DW ++K TELG +TP+ + E+ L+ + D L ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVSEITPIFSDRCEVRLKDER-ADKRLL----HWRQVAISAC 138
Query: 180 VYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGP 239
G R V++PP+ + L +Q++L V A PLV S ++ ++GP
Sbjct: 139 EQCG-RSRVPVIHPPLLLADWLKQ-AQAELKLVLHPVAEPLV----SHAKPATLAFLIGP 192
Query: 240 EGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
EG ++ EV + G A LGP LR ETA + LA
Sbjct: 193 EGGLSDAEVEQAKGNGFHAARLGPRVLRTETAPVVALAV 231
>gi|91202795|emb|CAJ72434.1| similar to RNA methyltransferase YggJ [Candidatus Kuenenia
stuttgartiensis]
Length = 244
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 110/245 (44%), Gaps = 9/245 (3%)
Query: 38 NQSRGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTG 97
+Q R IP S + +EG E H+ V R +++ LF+GKG + + R
Sbjct: 2 HQDRFFIPNV-SIDSEIWIEGKEAHHILHVKRAKQGNKITLFDGKGIEYKAVVVETQRAR 60
Query: 98 LDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
L V + LV+ + ++ A KG +D L++KC+ELG ++TPL E + +
Sbjct: 61 LKVFI--ESSLVVDREPNVSITIAVSIPKGKFSDILIQKCSELGIHTLTPLHCERSVVA- 117
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI--A 215
I + + + S+ L E+ + I+ L + L+ +
Sbjct: 118 -IKETSAEKRERWNKIVIESSKQCKRNILTEITTG--VAIEDFLKTLCDYDLSLMPCLRR 174
Query: 216 EATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIAL 275
A L L + + ++GPEG FT+ E+ + VE G V LG LR+ETA IA+
Sbjct: 175 HAMSLKAVLRERPSAKKIVCLIGPEGGFTDNEIERAVEKGCIPVTLGSSTLRIETAAIAV 234
Query: 276 LATLM 280
+ L+
Sbjct: 235 SSMLL 239
>gi|392553157|ref|ZP_10300294.1| 16S ribosomal RNA methyltransferase RsmE [Pseudoalteromonas
spongiae UST010723-006]
Length = 247
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 118/256 (46%), Gaps = 33/256 (12%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
IP + G I +++ D H+ +VLR+ +V LFNG+GG I + + +
Sbjct: 3 IPHIYQAGTIEVGTELQLGDDAAGHIGRVLRMQPGQQVSLFNGEGGEYLCTISQASKKNV 62
Query: 99 --------DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLT 150
DV + LK+ L Q G +G + ++ ++K ELG +TPL +
Sbjct: 63 YVSVDEFHDVTSESPLKIHLGQ----------GISRGEKMEFTIQKSVELGITEITPLFS 112
Query: 151 E---LHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVS-Q 206
E + LQ ++ + + IA +A G+ V++PP+K++ L S +
Sbjct: 113 ERCGVKLQGERLEKK-----HQQWQKIAIAAAEQSGRNFVP-VVHPPIKLEQWLTQPSDE 166
Query: 207 SKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRL 266
+KL AE + +S N ++ +VGPEG FT+ E+ A + LGP L
Sbjct: 167 TKLTLHPRAEHSIKTIDKLASFNATAMRFVVGPEGGFTDAEIAATKAADFVDIKLGPRVL 226
Query: 267 RVETATIALLATLMLC 282
R ETA + +L+ L L
Sbjct: 227 RTETAALTVLSALQLV 242
>gi|433654785|ref|YP_007298493.1| RNA methyltransferase, RsmE family [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433292974|gb|AGB18796.1| RNA methyltransferase, RsmE family [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 240
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 110/233 (47%), Gaps = 8/233 (3%)
Query: 50 QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLV 109
+ GI R+ GD+ H+ VLR ++ + NGK I I I+ + + + +E+ V
Sbjct: 7 KDGIARINGDDAHHIINVLRFKIGTKLIISNGKNQYI-VTILDIENSSVILKIIEEYNQV 65
Query: 110 LPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNF 169
+ + N+ G K + D +++KCTE+G + + P+ TE + KI + +
Sbjct: 66 V--ESPINITLYQGLPKSDKMDLIIQKCTEIGIKKIVPVETEF--STIKIKEKNIYNKIN 121
Query: 170 YYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP--LVTALSSS 227
+ I+ A G+ + VL P D L L ++ L + + T L L +
Sbjct: 122 RWKKISLEASKQSGRSIVPDVLVPVGFKDALESL-NEFDLCLIPYEKETNMRLKDVLKKN 180
Query: 228 RNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
+ + + +GPEG F+E E+ +E GA V LGP LR ETA I + ++
Sbjct: 181 FDAKNICVFIGPEGGFSENEIMAAIEYGAIPVTLGPRILRTETAGIVTSSIIL 233
>gi|149280553|ref|ZP_01886669.1| hypothetical protein PBAL39_05663 [Pedobacter sp. BAL39]
gi|149228668|gb|EDM34071.1| hypothetical protein PBAL39_05663 [Pedobacter sp. BAL39]
Length = 234
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 97/219 (44%), Gaps = 16/219 (7%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
+E H KVLRL D V L +G+GG E I + + + + ++ ++
Sbjct: 19 EESKHCLKVLRLGVGDVVNLIDGRGGFYEAEIIEAGKRNVKLRVTHARQEFQKRNHHLHI 78
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSA 178
A T R +W +EK TE+G +TPLL E RKI L F ++
Sbjct: 79 AIA-PTKNIDRLEWFLEKATEIGIDEITPLLCER--SERKIVKEDRL-------FKVITS 128
Query: 179 FVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIA---EATPLVTALSSSRNESSGLI 235
V + + VLNP + L Q F IA + P + + I
Sbjct: 129 AVKQSLQAYHPVLNPLTSMSDFL---RQENDTFKMIAHCIDGVPREYISEVIQPQGRYTI 185
Query: 236 IVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274
++GPEGDF+EKE+ +++G + LG RLR ETA +A
Sbjct: 186 LIGPEGDFSEKEIQHALQSGYKPLTLGNTRLRTETAALA 224
>gi|146328991|ref|YP_001209347.1| hypothetical protein DNO_0433 [Dichelobacter nodosus VCS1703A]
gi|146232461|gb|ABQ13439.1| conserved hypothetical protein [Dichelobacter nodosus VCS1703A]
Length = 240
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 91/211 (43%), Gaps = 10/211 (4%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
H KVLRL ND V++ G G G I IDR V + T+ + A
Sbjct: 27 HALKVLRLRENDAVDVICGDGYFYHGEITCIDRKQTLVRVYSRSEHSTRPKTEVILLPAL 86
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
LKG DW+++K ELG + V P+ TE + R GD + G + SA G
Sbjct: 87 --LKGEPMDWVLQKSVELGVRRVIPMNTE-RSERRIEGDRLTSKYEHWQGILQASALQCG 143
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
R +L+ PM L ++ K E TP + + SS ++VGPEG
Sbjct: 144 --RAEWPLLSLPMNFIDALKTIADEKWILSPHDETTPAIKEMPSSIA-----LMVGPEGG 196
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
F+E EV V G G LR +TA++
Sbjct: 197 FSEDEVQSAVHMGWKTHCFGSRILRADTASV 227
>gi|422300459|ref|ZP_16387976.1| hypothetical protein Pav631_4625 [Pseudomonas avellanae BPIC 631]
gi|407987340|gb|EKG30170.1| hypothetical protein Pav631_4625 [Pseudomonas avellanae BPIC 631]
Length = 239
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 105/215 (48%), Gaps = 10/215 (4%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR++ D ++LF+G G G + + + + V E + + +
Sbjct: 26 YISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKRVRVQLTECFAGQV--ESGLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TP+++E ++ D ++ IA SA
Sbjct: 84 GLSRGERMDWAIQKATELGVSEITPIVSER--CEVRLKDERAEKRQAHWQQIAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G+ + V++PPM + + L +++ L V P+ L+S +S ++GPEG
Sbjct: 142 GRSVVP-VIHPPMPLADWIKL-TEADLKLVL----HPVAEPLTSHAKPASLAFLIGPEGG 195
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
+ EV++ AG A LGP LR ETA + L+
Sbjct: 196 LNDAEVHQAQTAGFHAARLGPRVLRTETAPVVALS 230
>gi|433444357|ref|ZP_20409276.1| ribosomal RNA small subunit methyltransferase E [Anoxybacillus
flavithermus TNO-09.006]
gi|432001649|gb|ELK22522.1| ribosomal RNA small subunit methyltransferase E [Anoxybacillus
flavithermus TNO-09.006]
Length = 250
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 111/251 (44%), Gaps = 24/251 (9%)
Query: 44 IPRFFSQ-----GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRI--DRT 96
+ R+F + G V + GD+ H+ +V+R++ DR N + + I++I D
Sbjct: 2 LQRYFVRNEQIVGDHVMISGDDVHHIGRVMRMNEGDRFLCCNERSETMLCEIEQISNDFV 61
Query: 97 GLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHL-- 154
++ + + LP H V+ A G LKG + + +++K TELGA+ PL+T +
Sbjct: 62 RCRIIQWIEANVELPVH----VYVASGLLKGDKYELVLQKGTELGAKGFLPLITSRSIVK 117
Query: 155 QSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI 214
K GD + + +A R + + PM I L+ ++A
Sbjct: 118 WDEKKGDK---KVERWQKIVKEAA--EQSHRAYMPSVCAPMTIRELIAWARDINYKYIAY 172
Query: 215 AEATP------LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRV 268
E L + E S LI+ GPEG +E+EV + E G A LGP LR
Sbjct: 173 EEEAKEGRHRSFAHLLQTMSKEDSLLIVFGPEGGLSEQEVALLKEHGFVACSLGPRILRA 232
Query: 269 ETATIALLATL 279
ETA + L+ +
Sbjct: 233 ETAPLYALSAV 243
>gi|410089834|ref|ZP_11286443.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas viridiflava
UASWS0038]
gi|409762830|gb|EKN47825.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas viridiflava
UASWS0038]
Length = 239
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 103/215 (47%), Gaps = 10/215 (4%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR++ D ++LF+G G G + + + + V D + +
Sbjct: 26 YISRVLRMTEGDALQLFDGSGSEFRGTLLEVGKKRVRVQL--DECFAGQVESGLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TP+++E ++ D ++ IA SA
Sbjct: 84 GLSRGERMDWAIQKATELGVSEITPIVSERC--EVRLKDERAEKRQMHWQQIAVSACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G+ + V++PPM + L +++ L V P+ L+S +S ++GPEG
Sbjct: 142 GRSVVP-VIHPPMPLAEWLKQ-TEADLKLVL----HPVAEPLTSHEKPASLAFLIGPEGG 195
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
+ EV++ AG A LGP LR ETA + L+
Sbjct: 196 LNDAEVDQAQTAGFHAARLGPRVLRTETAPVVALS 230
>gi|229593101|ref|YP_002875220.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas fluorescens
SBW25]
gi|229364967|emb|CAY53089.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
Length = 239
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 104/220 (47%), Gaps = 20/220 (9%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDL--KLVLPQHTQWNVFA 120
++++VLR+ D V+LF+G G G + + + + V E + + P H +
Sbjct: 26 YISRVLRMGEGDAVQLFDGSGQEFLGSLLEVGKKRVTVQLTESVAGQAESPLH----IHL 81
Query: 121 AFGTLKGGRADWLVEKCTELGAQSVTPLLT---ELHLQSRKIGDNGFLSCNFYYGFIANS 177
G +G R DW ++K TELG ++TP+ + E+ L+ + D L ++ +A S
Sbjct: 82 GQGLSRGERMDWAIQKATELGVNAITPIFSDRCEVRLKDER-ADKRLL----HWRQVAIS 136
Query: 178 AFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIV 237
A G+ ++ P + D L + KL +AE P+V S SS ++
Sbjct: 137 ACEQCGRSTVPLIHPPLLLADWLKQTEADLKLVLHPVAE--PMV----SHAKPSSLAFLI 190
Query: 238 GPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
GPEG T+ EV AG A LGP LR ETA + LA
Sbjct: 191 GPEGGLTDAEVQAAQGAGYHAARLGPRVLRTETAPVVALA 230
>gi|77461509|ref|YP_351016.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas fluorescens
Pf0-1]
gi|77385512|gb|ABA77025.1| 16S rRNA m(3)U-1498 methyltransferase [Pseudomonas fluorescens
Pf0-1]
Length = 239
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 106/220 (48%), Gaps = 18/220 (8%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR++ D V+LF+G G G + + + VV D + + +
Sbjct: 26 YISRVLRMAEGDAVQLFDGSGHEFRGSLVEVGKK--RVVVQIDEQFAGQVESPLKIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G +G R DW ++K TELG +TP+ +E + L+ + D L ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVTEITPIFSERCEVRLKDER-ADKRLL----HWRQVAISAC 138
Query: 180 VYGGQRLHEMVLNPPMKI-DGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVG 238
G R V++PP+ + D L ++ KL +AE PLV S S+ ++G
Sbjct: 139 EQCG-RSRVPVIHPPVLLADWLKQTEAELKLVLHPVAE--PLV----SHAKPSTLAFLIG 191
Query: 239 PEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
PEG ++ EV + G A LGP LR ETA + LA
Sbjct: 192 PEGGLSDAEVEQAKAGGFHAARLGPRVLRTETAPVVALAV 231
>gi|423093198|ref|ZP_17080994.1| 16S rRNA methyltransferase, RsmE family [Pseudomonas fluorescens
Q2-87]
gi|397882641|gb|EJK99128.1| 16S rRNA methyltransferase, RsmE family [Pseudomonas fluorescens
Q2-87]
Length = 239
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 105/221 (47%), Gaps = 20/221 (9%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDL--KLVLPQHTQWNVFA 120
++ +VLR++ D V++F+G G G + + + + V E ++ P H +
Sbjct: 26 YIGRVLRMAEGDAVQVFDGSGQEFRGTLAEVGKKRVRVQLDEQFAGQVESPLH----IHL 81
Query: 121 AFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNFYYGFIANS 177
G +G R DW ++K TELG +TP+ +E + L+ + D L ++ +A S
Sbjct: 82 GQGLSRGERMDWAIQKATELGVSEITPIFSERCEVRLKDER-ADKRLL----HWRQVAIS 136
Query: 178 AFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIV 237
A G+ ++ P + D L ++ KL +AE PLV S S+ ++
Sbjct: 137 ACEQCGRSTVPLIHPPLLLADWLKQTEAELKLVLHPVAE--PLV----SHAKPSTLAFLI 190
Query: 238 GPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
GPEG ++ EV + AG A LGP LR ETA + LA
Sbjct: 191 GPEGGLSDAEVEQAKTAGYHAARLGPRVLRTETAPVVALAV 231
>gi|374997414|ref|YP_004972913.1| RsmE family RNA methyltransferase [Desulfosporosinus orientis DSM
765]
gi|357215780|gb|AET70398.1| RNA methyltransferase, RsmE family [Desulfosporosinus orientis DSM
765]
Length = 245
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 112/241 (46%), Gaps = 32/241 (13%)
Query: 59 DEFW-------HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLP 111
D FW H+ +VLRLS D V ++ G + I+ + L + +
Sbjct: 12 DFFWLRDAEREHLVRVLRLSPGDLVVGYDNTGREYTAVVVNIEDKSVTCRILSTDEPDVE 71
Query: 112 QHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCN 168
HT +V+ G KG R DW+++K TELG + PL + +H++ +K D
Sbjct: 72 AHT--SVYIVAGLSKGERMDWVIQKGTELGMAGLIPLRAKRAIVHIEGKKAQDR-----V 124
Query: 169 FYYGFIANSAFVYGGQRLHEMVLNPPMK-------IDGLLPLVSQSKLAFVAIAEATPLV 221
+ IA+ A ++ H VL P +K I GLLP +Q + + ++ +
Sbjct: 125 ARWQKIASEA----AKQSHR-VLEPEIKEVSDWKDIKGLLPEDTQWIIPYEE-EKSQRMA 178
Query: 222 TALSSSRNESSGLIIVGPEGDFTEKEVNKIVEA-GATAVGLGPHRLRVETATIALLATLM 280
L + E II+GPEG F E EV E GA +V LGP LR ETA +A L TL+
Sbjct: 179 PVLGGMKAEHPVAIIIGPEGGFEESEVAWAKENLGAQSVSLGPRILRTETAAMAAL-TLV 237
Query: 281 L 281
L
Sbjct: 238 L 238
>gi|398839157|ref|ZP_10596407.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM102]
gi|398113787|gb|EJM03631.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM102]
Length = 239
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 106/220 (48%), Gaps = 18/220 (8%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR++ D V+LF+G G G + + + V+ D + V
Sbjct: 26 YISRVLRMAEGDAVQLFDGSGHEFRGTLAEVGKK--RVLVNIDESFAGQVESSLAVHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLT---ELHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G +G R DW ++K TELG +TP+ T E+ L+ + D + ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVSEITPIFTDRCEVRLKDER-ADKRLM----HWRQVAISAC 138
Query: 180 VYGGQRLHEMVLNPPMKI-DGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVG 238
G R V++PP+ + D L ++ KL +AE PLV S ++ ++G
Sbjct: 139 EQCG-RSSVPVIHPPLLLADWLKQTEAELKLVLHPVAE--PLV----SHAKPATLAFLIG 191
Query: 239 PEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
PEG ++ EV + AG A LGP LR ETA + LA
Sbjct: 192 PEGGLSDAEVEQAKAAGFHAARLGPRVLRTETAPVVALAV 231
>gi|398872348|ref|ZP_10627645.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM74]
gi|398203279|gb|EJM90104.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM74]
Length = 239
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 104/219 (47%), Gaps = 16/219 (7%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR++ D ++LF+G G + + + VV D + +
Sbjct: 26 YISRVLRMAEGDVLQLFDGSGQEFRARLVEVGKK--RVVVQVDESFAGQVESPLQIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLT---ELHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G +G R DW ++K TELG +TP+ T E+ L+ + D L ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVTEITPIFTDRCEVRLKDER-ADKRLL----HWRQVAISAC 138
Query: 180 VYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGP 239
G R V++PP+ + L +Q++L V A PLV S SS ++GP
Sbjct: 139 EQCG-RSRVPVIHPPLLLADWLKQ-TQAELKLVLHPVAEPLV----SHAKPSSLAFLIGP 192
Query: 240 EGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
EG ++ EV++ G A LGP LR ETA + LA
Sbjct: 193 EGGLSDAEVDQAKSTGFHAARLGPRVLRTETAPVVALAV 231
>gi|392544495|ref|ZP_10291632.1| 16S ribosomal RNA methyltransferase RsmE [Pseudoalteromonas
piscicida JCM 20779]
Length = 244
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 112/234 (47%), Gaps = 20/234 (8%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVV--ALEDLKLVLP 111
V ++ D H+ +VLR++T D+V LFNG+GG + + + + V + ED + P
Sbjct: 18 VTLDDDAAGHIGRVLRMTTKDKVSLFNGQGGEYLCQLSEVGKKKVVAVPESFEDKNVESP 77
Query: 112 QHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR---KIGDNGFLSCN 168
+ G +G + D+ ++K ELG +TPL T +R K+ +
Sbjct: 78 ----LAIHLGQGISRGDKMDFTIQKSVELGVSEITPLFT-----TRCGVKLSGERLAKKH 128
Query: 169 FYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSR 228
+ IA +A G R V++PPM++ L S +L A + L ++
Sbjct: 129 QQWQKIAIAAAEQSG-RNTITVIHPPMELSEWLAQQS-DELKITLHPRAEHSIKTLPYTQ 186
Query: 229 NESSGL-IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
SG+ +VGPEG FT++E++ + V LGP LR ETA + +L+ L L
Sbjct: 187 ---SGIRFLVGPEGGFTDEELDATAQQRFVDVRLGPRVLRTETAALTVLSALQL 237
>gi|378953389|ref|YP_005210877.1| ribosomal RNA small subunit methyltransferase E [Pseudomonas
fluorescens F113]
gi|359763403|gb|AEV65482.1| Ribosomal RNA small subunit methyltransferase E [Pseudomonas
fluorescens F113]
Length = 263
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 16/219 (7%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR++ D V++F+G G G + + + + V D + + +
Sbjct: 50 YISRVLRMAEGDAVQVFDGSGQEFRGTLAEVGKKRVRVQL--DEQFAGQAESPLRIHLGQ 107
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G +G R DW ++K TELG +TP+ +E + L+ + D L ++ +A SA
Sbjct: 108 GLSRGERMDWAIQKATELGVSEITPIFSERCEVRLKDER-ADKRLL----HWRQVAISAC 162
Query: 180 VYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGP 239
G R V++PP+ + L +++ L V A PLV S S+ ++GP
Sbjct: 163 EQCG-RSSVPVIHPPLLLADWLK-QTEAGLKLVLHPVAEPLV----SHDKPSTLAFLIGP 216
Query: 240 EGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
EG ++ EV + AG A LGP LR ETA + LA
Sbjct: 217 EGGLSDAEVEQAKSAGYHAARLGPRVLRTETAPVVALAV 255
>gi|374597965|ref|ZP_09670967.1| Ribosomal RNA small subunit methyltransferase E [Myroides odoratus
DSM 2801]
gi|423323700|ref|ZP_17301542.1| RsmE family RNA methyltransferase [Myroides odoratimimus CIP
103059]
gi|373909435|gb|EHQ41284.1| Ribosomal RNA small subunit methyltransferase E [Myroides odoratus
DSM 2801]
gi|404609227|gb|EKB08623.1| RsmE family RNA methyltransferase [Myroides odoratimimus CIP
103059]
Length = 235
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 107/232 (46%), Gaps = 19/232 (8%)
Query: 57 EGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRI-DRTGL-DVVALEDLKLVLPQHT 114
+ DE H+ +VLR D + + NG+G L E I DR+ L D+V D + T
Sbjct: 19 DKDESKHIIRVLRKKEGDILFVTNGRGTLFETRISLASDRSCLTDIVGYTD-----KEQT 73
Query: 115 QWNVFAAFGTLK-GGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGF 173
+ + A K R +W +EK TE+G +TP++ + H + + + F
Sbjct: 74 PFRLHLAVAPTKMNERYEWFLEKATEIGIHEITPIICD-HSERKVVKTERFEK------- 125
Query: 174 IANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSS-RNESS 232
I SA Q LH LN P+ + L Q L ++A E L + + + +
Sbjct: 126 IIQSAMKQSLQ-LHLPQLNEPITLKEFLKQDHQGAL-YIAHCEDDQTKELLKNKIQPQEN 183
Query: 233 GLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSD 284
L++VGPEGDF+ E+ +E G V LG RLR ETA + + + ++
Sbjct: 184 YLLLVGPEGDFSPVEIKIALEKGFKPVSLGHTRLRTETAALVACHSFVFANE 235
>gi|408492606|ref|YP_006868975.1| 16S ribosomal RNA methyltransferase RsmE [Psychroflexus torquis
ATCC 700755]
gi|408469881|gb|AFU70225.1| 16S ribosomal RNA methyltransferase RsmE [Psychroflexus torquis
ATCC 700755]
Length = 233
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 106/239 (44%), Gaps = 18/239 (7%)
Query: 45 PRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE 104
P F S + + E H++KVLR S + + L NG G EG + V
Sbjct: 7 PNFDSSATSISINEMESRHISKVLRKSIGESIYLTNGLGICAEGILISNHPKKCKV---- 62
Query: 105 DLKLVLPQHT-QWNVFAAFGTLKGG-RADWLVEKCTELGAQSVTPLLTELHLQSRKIGDN 162
++K ++ + + + A K R +W +EK TE+G +TPLL + H + RKI
Sbjct: 63 EVKTIIEEKKPNFRIHIAIAPTKANDRFEWFLEKATEIGIDEITPLLCD-HSERRKI--- 118
Query: 163 GFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVT 222
+ Y + + RL +LNP + + L+ S SK + T
Sbjct: 119 ---KADRYEKVLQTAMKQSLKYRL--PLLNPMISFNDLMKSDSDSKKMIAHCEDDTK--E 171
Query: 223 ALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
LS + N LI++GPEGDF+ E+ K ++ + L RLR ETA I T+ L
Sbjct: 172 KLSGTVNRD-NLILIGPEGDFSIDEIKKAIKHEFLPISLSEARLRTETAGIVACHTVNL 229
>gi|421590383|ref|ZP_16035396.1| 16S ribosomal RNA methyltransferase RsmE [Rhizobium sp. Pop5]
gi|403704472|gb|EJZ20343.1| 16S ribosomal RNA methyltransferase RsmE [Rhizobium sp. Pop5]
Length = 245
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 104/222 (46%), Gaps = 14/222 (6%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
S G V D+F ++ VLRL + LFNG+ G + + R + + A E +
Sbjct: 16 LSSGAAVEANADQFNYLANVLRLEDGAEILLFNGRDGEWKATLSFPTRKRIQLTATEQTR 75
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
PQ ++ F LK GR D+LV+K E+GA + P++T+ H+Q KI + L
Sbjct: 76 ---PQPAPCDLHYLFAPLKVGRLDYLVQKAVEMGAGLLQPVMTQ-HVQG-KITNLDKLRA 130
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLP-LVSQSKLAFVAIAEATPLVTALSS 226
N A V G + E PMK+ LL S+ ++ + +A + S
Sbjct: 131 NVVEA--AEQCGVLGIPEVAE-----PMKLSDLLDRWPSERRIIYCDEGDAGQNPLPVLS 183
Query: 227 SRNESSGLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLR 267
+ E ++VGPEG F+E+E ++ TA+ LGP LR
Sbjct: 184 AIQERHLALLVGPEGGFSEEERARLRSLDFVTAIPLGPRILR 225
>gi|383648591|ref|ZP_09958997.1| 16S ribosomal RNA methyltransferase RsmE [Sphingomonas elodea ATCC
31461]
Length = 246
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 110/242 (45%), Gaps = 20/242 (8%)
Query: 45 PRFFSQG----GIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV 100
PR F +G G R++G + ++ V+RL + V+LF+G G G + I + L +
Sbjct: 13 PRLFVEGPLEPGPRRIDGPQAHYLGSVMRLKPGEAVKLFDGSNGEWLGIARDIGKRDLTL 72
Query: 101 VALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIG 160
E L+ P +++ +K GR DW+ EK ELG + P+LT + R
Sbjct: 73 EITEQLR---PHEAVPDLWLCAAPIKKGRIDWVAEKACELGVARLVPVLTRRTVIDR--- 126
Query: 161 DNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPL 220
L+ + + +A G L E+V P+K+ LL + F A+ T
Sbjct: 127 ----LNLDRLRSHMIEAAEQCGRTALPELVE--PVKLPALLRDWPAERSLF--FADETGG 178
Query: 221 VTALSSSR-NESSGLIIVGPEGDFTEKEVNKI-VEAGATAVGLGPHRLRVETATIALLAT 278
V AL + R + I+VGPEG F +E I + A + LGP LR ETA A +
Sbjct: 179 VPALEAMRAHPGPAAILVGPEGGFDAEERESIRAVSQAIGIALGPRILRAETAAAAAVTL 238
Query: 279 LM 280
M
Sbjct: 239 WM 240
>gi|365893612|ref|ZP_09431783.1| conserved hypothetical protein [Bradyrhizobium sp. STM 3843]
gi|365425638|emb|CCE04325.1| conserved hypothetical protein [Bradyrhizobium sp. STM 3843]
Length = 248
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 117/245 (47%), Gaps = 24/245 (9%)
Query: 45 PRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PR F S G V +E D+ ++ VLRLST DRV +FNG+ G + I R
Sbjct: 9 PRLFVDAALSTGQTVALERDQSNYLGNVLRLSTGDRVLVFNGRDGEWQATIAGRKRAEQL 68
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
V + PQ +V F LK R D++V+K E+GA + P++T +R
Sbjct: 69 TVQ----EQTRPQDRLPDVAYVFAPLKHARLDYMVQKAVEMGACRLQPVITRFTQVARVN 124
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
G+ + N + +A G L E+ P+ ++ L S +L V EA
Sbjct: 125 GER--MRAN-----VIEAAEQCGILSLAEV--TDPVPLERFLSQRSAQRL-LVFCDEAAE 174
Query: 220 LVTALSSSRN---ESSGL-IIVGPEGDFTEKEVNKIVEAGATA-VGLGPHRLRVETATIA 274
+ + L + R+ ++G+ +++GPEG F E+E ++ A + LGP LR +TA +A
Sbjct: 175 VASPLEALRDVGEPAAGIDVLIGPEGGFAEEERTLLLRQPRLARLALGPRILRADTAGVA 234
Query: 275 LLATL 279
LA +
Sbjct: 235 ALALI 239
>gi|408356466|ref|YP_006844997.1| ribosomal RNA small subunit methyltransferase E [Amphibacillus
xylanus NBRC 15112]
gi|407727237|dbj|BAM47235.1| ribosomal RNA small subunit methyltransferase E [Amphibacillus
xylanus NBRC 15112]
Length = 249
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 108/242 (44%), Gaps = 27/242 (11%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQ- 112
V ++GD++ H+ V+R+ D V + N E + IDR + L + + Q
Sbjct: 16 VVIKGDDYHHIVNVMRMRVGDEV-ICNHPDK--EAYLCSIDRIDQQAIYLNKINRMTDQV 72
Query: 113 HTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLT-------ELHLQSRKIGDNGFL 165
++ G KG + +W+V+K TELG + + PL T ++ Q++KI
Sbjct: 73 ELPVDITLIQGLPKGDKLEWIVQKSTELGVKKIIPLNTARSVVKWDIKKQAKKID----- 127
Query: 166 SCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT------P 219
IA A R + ++ M I L + + FVA E T
Sbjct: 128 ----RLKKIAKEA-SEQSHRTDQPIIESLMTIKQLSAQIEEFDHLFVAYEETTRQIKTDK 182
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
L T L + + S I++GPEG TE+E+ ++ A AV LGP LR ETA + L+ +
Sbjct: 183 LYTYLENIKPGQSVAIVIGPEGGLTEEEIEQLYAAQFKAVRLGPRILRTETAPLYFLSVM 242
Query: 280 ML 281
L
Sbjct: 243 SL 244
>gi|410632673|ref|ZP_11343326.1| 16S rRNA (uracil1498-N3)-methyltransferase [Glaciecola arctica
BSs20135]
gi|410147752|dbj|GAC20193.1| 16S rRNA (uracil1498-N3)-methyltransferase [Glaciecola arctica
BSs20135]
Length = 242
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 107/239 (44%), Gaps = 16/239 (6%)
Query: 45 PRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE 104
P S V + D H+ VLR T V LFNG G + + + VVA
Sbjct: 9 PFELSTDSYVTLTDDATNHLANVLRAKTGQAVVLFNGDGNEYSAQLSEVAKR--KVVAHV 66
Query: 105 DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGF 164
D K+ + + ++ G +G R +W+++K ELG +TPL+TE K+G +
Sbjct: 67 DSKISISIESPLSIHLGQGISRGDRMEWVIQKSIELGVTEITPLITE--RCGVKLGKERW 124
Query: 165 LSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA----TPL 220
+ + +A +A G+ + ++ P D + +Q +L A+ P+
Sbjct: 125 SKKHEQWQKLAIAACEQCGRNVLPILHAPSSFADWVNLSTNQVRLTLHPRADKAFRHVPM 184
Query: 221 VTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
A +++GPEG F+E+E+ + + G + LGP LR ETA IA ++ L
Sbjct: 185 PPA--------GARLLIGPEGGFSEQEIYQTEQNGFQTIQLGPRVLRTETAAIAAISAL 235
>gi|397685459|ref|YP_006522778.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas stutzeri DSM
10701]
gi|395807015|gb|AFN76420.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas stutzeri DSM
10701]
Length = 238
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 102/218 (46%), Gaps = 15/218 (6%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLP--QHTQWNVFA 120
+M +VLRL+ V+LF+G+G G + + + + V L LP ++ +
Sbjct: 26 YMARVLRLAAGAAVQLFDGRGQEYRGELIEVGKKAVRV----QLHEALPGLAESRLQIHL 81
Query: 121 AFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFV 180
G +G R DW ++K TELGA +TP+++E ++ D ++ IA SA
Sbjct: 82 GQGLSRGERMDWAIQKATELGATQITPVISERC--EVRLKDERADKRLTHWRQIAISACE 139
Query: 181 YGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPE 240
G+ + V++PP + L + + KL +AE L S ++ ++GPE
Sbjct: 140 QCGRSVIP-VIHPPQLLADWLAIEADLKLVLHPVAEP------LESHAAPATLAFLIGPE 192
Query: 241 GDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
G + EV + AG LGP LR ETA + L+
Sbjct: 193 GGLNDAEVEQARTAGFQPARLGPRVLRTETAPVVALSV 230
>gi|209966873|ref|YP_002299788.1| 16S ribosomal RNA methyltransferase RsmE [Rhodospirillum centenum
SW]
gi|209960339|gb|ACJ00976.1| conserved hypothetical protein [Rhodospirillum centenum SW]
Length = 260
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 114/235 (48%), Gaps = 20/235 (8%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
S+G V +EG ++ VLR+ +RV FNG+ G + ++ ++G + AL +
Sbjct: 15 LSEGAAVPLEGGRAHYLRTVLRMQPGERVLAFNGRDGEWLAEVAQLGKSGGTLTALRRER 74
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
+ W +FA LKGGR+D + EK TELGA + P+ T + D G ++
Sbjct: 75 DQTGEEGPWLLFA---PLKGGRSDSVAEKATELGAAVLHPVFT-------RRTDVGRVNL 124
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPM--KIDGLLPLVSQSKLAFVAI--AEATPLVTA 223
+A + E+ P+ ++G P +++ FVA +A P V+A
Sbjct: 125 ERLAANAVEAAEQCERLSVPEVREACPLFKALEGWDP----ARVLFVAAESGQAMPAVSA 180
Query: 224 LSSSRNESSGLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLRVETATIALLA 277
+++ R + ++ GPEG F E++ ++ VGLGP LR +TA A+LA
Sbjct: 181 VTAQRGRPAAWLL-GPEGGFDRAELDGLLHLPFVVPVGLGPRVLRADTAAFAVLA 234
>gi|167036024|ref|YP_001671255.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida GB-1]
gi|166862512|gb|ABZ00920.1| protein of unknown function DUF558 [Pseudomonas putida GB-1]
Length = 239
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 113/237 (47%), Gaps = 16/237 (6%)
Query: 46 RFFSQGGIVRVEGD----EFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVV 101
RFF + E D + ++ +VLR++ D V+LF+G G G + + + + V
Sbjct: 5 RFFIDAPLSLGEHDLPEAQAHYIGRVLRMAPGDAVQLFDGSGQEYLGQLLEVGKKTVRVS 64
Query: 102 ALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGD 161
D L + +V G +G R DW ++K TELGA +TP+++E ++ D
Sbjct: 65 L--DQALTGQADSPLHVHLGQGLSRGERMDWAIQKATELGANEITPIVSER--CEVRLKD 120
Query: 162 NGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLV 221
++ +A SA G R V++PP+ + L +Q+ L V A PL
Sbjct: 121 ERADKRLAHWRQVAISACEQCG-RSTLPVIHPPVPLTEWLS-STQADLKLVLHPVAEPL- 177
Query: 222 TALSSSRNESSGL-IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
+S + +GL ++GPEG +E EV + AG A LGP LR ETA + L+
Sbjct: 178 ----TSHAKPAGLAFLIGPEGGLSEAEVEQAKAAGFHAARLGPRVLRTETAPVVALS 230
>gi|423013598|ref|ZP_17004319.1| 16S ribosomal RNA methyltransferase RsmE [Achromobacter
xylosoxidans AXX-A]
gi|338783534|gb|EGP47900.1| 16S ribosomal RNA methyltransferase RsmE [Achromobacter
xylosoxidans AXX-A]
Length = 243
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 109/244 (44%), Gaps = 21/244 (8%)
Query: 45 PRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PRFF S G + + H +VLRL + V LFNG+GG ++ + G
Sbjct: 4 PRFFCDAPLSAGARIALPEALAHHAIRVLRLRAGETVALFNGQGGEYPAVLEIEGKAGFA 63
Query: 100 VVALEDLKLVLPQHTQW--NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHL 154
+ D P+ + + G G + DW+VEK ELGA V+P+ + L L
Sbjct: 64 QLGAFD-----PREAELAGRITLVQGLPAGDKMDWVVEKAVELGAARVSPIAAQRSVLQL 118
Query: 155 QSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI 214
++ ++ IA SA G R M ++ P+ + L +
Sbjct: 119 AGPRLEKR-----VAHWQRIAQSAAEQCG-RNRLMAVDAPVALADWLAQPADGLRLLCHP 172
Query: 215 AEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274
T L L ++ +S ++VGPEG +++KE+ + EAG AV GP LR ETA +A
Sbjct: 173 EADTDLAGLLGATPGLASLTLLVGPEGGWSDKELAQAREAGVQAVRFGPRVLRTETAGLA 232
Query: 275 LLAT 278
L++
Sbjct: 233 LISA 236
>gi|407782494|ref|ZP_11129706.1| 16S ribosomal RNA methyltransferase RsmE [Oceanibaculum indicum
P24]
gi|407205859|gb|EKE75825.1| 16S ribosomal RNA methyltransferase RsmE [Oceanibaculum indicum
P24]
Length = 252
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 102/213 (47%), Gaps = 20/213 (9%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ VLRLS DR+ LFNG+ G I + + V LE L+ PQ + +++ F
Sbjct: 30 YLRSVLRLSPGDRLALFNGRDGEWLAEISDLGKASALVTPLEQLR---PQAVEPDLWLVF 86
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSA-FVY 181
LK R D+L EK TELG ++ P+ T+ + SR + +AN+
Sbjct: 87 APLKHARIDYLAEKATELGVSALCPVFTQRTIVSRVNEER----------LLANAVEAAE 136
Query: 182 GGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVA--IAEATPLVTALSSSRNESSG-LIIVG 238
+RL + P K++ +L + V P+ AL+ N S G +++G
Sbjct: 137 QSERLSVPEVMPARKLEAVLADWPAGRRLLVCDETGGGRPISEALAD--NVSGGNAVLIG 194
Query: 239 PEGDFTEKEVNKIVEAG-ATAVGLGPHRLRVET 270
PEG FTE E++ + + TA+ LGP LR +T
Sbjct: 195 PEGGFTETELDGLRKLPFVTAISLGPRVLRADT 227
>gi|399519075|ref|ZP_10759883.1| Ribosomal RNA small subunit methyltransferase E [Pseudomonas
pseudoalcaligenes CECT 5344]
gi|399112899|emb|CCH36441.1| Ribosomal RNA small subunit methyltransferase E [Pseudomonas
pseudoalcaligenes CECT 5344]
Length = 241
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 106/219 (48%), Gaps = 16/219 (7%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +VLR + D V+LF+G G G + + + + V E + + + +
Sbjct: 26 YIGRVLRHAVGDAVQLFDGSGHEYLGELIEVGKKSVRVELRESIAGL--SESPLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLT---ELHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G +G R DW ++K TELGA +TP+++ E+ L+ + ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGASEITPIVSARCEVRLKDERADKR-----MTHWRQVAISAC 138
Query: 180 VYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGP 239
G+ + V+NPP ++D L + ++ L V P+ L S +S ++GP
Sbjct: 139 EQCGRSVLP-VINPPQELDTWLQQI-EADLKLVL----HPIAAPLQSHDKPNSLAFLIGP 192
Query: 240 EGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
EG ++ EV++ AG + LGP LR ETA + L+
Sbjct: 193 EGGLSDAEVDQAKAAGFHSARLGPRVLRTETAPVVALSV 231
>gi|422590817|ref|ZP_16665469.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|330878069|gb|EGH12218.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
morsprunorum str. M302280]
Length = 239
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 103/216 (47%), Gaps = 12/216 (5%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR++ D ++LF+G G G + + + + V E + + +
Sbjct: 26 YISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKRVRVQLTECFAGQV--ESGLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TP+++E ++ D ++ IA SA
Sbjct: 84 GLSRGERMDWAIQKATELGVSEITPIVSER--CEVRLKDERAEKRQAHWQQIAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQS-KLAFVAIAEATPLVTALSSSRNESSGLIIVGPEG 241
G+ + V++PPM + + L KL +AE L+S +S ++GPEG
Sbjct: 142 GRSVVP-VIHPPMPLADWIKLTDADLKLVLHPVAEP------LTSHARPASLAFLIGPEG 194
Query: 242 DFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
+ EV++ AG A LGP LR ETA + L+
Sbjct: 195 GLNDAEVHQAQTAGFHAARLGPRVLRTETAPVVALS 230
>gi|387896118|ref|YP_006326415.1| 16S rRNA methyltransferase, RsmE family [Pseudomonas fluorescens
A506]
gi|387161564|gb|AFJ56763.1| 16S rRNA methyltransferase, RsmE family [Pseudomonas fluorescens
A506]
Length = 239
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 107/219 (48%), Gaps = 18/219 (8%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR+ D V+LF+G G G + + + + V L D + ++
Sbjct: 26 YISRVLRMGEGDAVQLFDGSGQEFSGTLLEVGKKRV-TVQLTD-SFAGQAESPLHIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLT---ELHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G +G R DW ++K TELG ++TP+ + E+ L+ + D L ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVNAITPIFSDRCEVRLKDER-ADKRLL----HWRQVAISAC 138
Query: 180 VYGGQRLHEMVLNPPMKI-DGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVG 238
G R V++PP+ + D L + KL +AE P++ S SS ++G
Sbjct: 139 EQCG-RSTVPVIHPPLLLADWLKQTEADLKLVLHPVAE--PMI----SHAKPSSLAFLIG 191
Query: 239 PEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
PEG T+ EV +AG A LGP LR ETA + L+
Sbjct: 192 PEGGLTDNEVATAQDAGYHAARLGPRVLRTETAPVVALS 230
>gi|168204735|ref|ZP_02630740.1| RNA methyltransferase, RsmE family [Clostridium perfringens E str.
JGS1987]
gi|169343763|ref|ZP_02864762.1| conserved hypothetical protein [Clostridium perfringens C str.
JGS1495]
gi|169298323|gb|EDS80413.1| conserved hypothetical protein [Clostridium perfringens C str.
JGS1495]
gi|170663617|gb|EDT16300.1| RNA methyltransferase, RsmE family [Clostridium perfringens E str.
JGS1987]
Length = 250
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 104/222 (46%), Gaps = 12/222 (5%)
Query: 55 RVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHT 114
++ G++ H+ KVLR+ ++V + N + G ++ +++ + + LE KL + +
Sbjct: 17 KITGEDVKHIYKVLRVKPGEKVVVNNLESEEFLGEVEEVNKQEVSIKILE--KLDVNNES 74
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
N+ G K + D +V+KC ELG + P +T+ + + G+ L I
Sbjct: 75 NLNITLFQGMPKAAKMDLIVQKCVELGVSEIIPTITD-RVDVKLKGEFKKLD---RLNKI 130
Query: 175 ANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT-----PLVTALSSSRN 229
A A + + VL P M G+L + Q L + AT +V ++ +
Sbjct: 131 ALEACKQSKRTVIPQVLEP-MDFKGVLEKIDQLDLMVIPYENATGYGIRAMVNSIEDKDS 189
Query: 230 ESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA 271
+ I+VGPEG F E E+ + E GA V LGP LR ETA
Sbjct: 190 IKNVGIMVGPEGGFEESEIEALKEKGAHIVTLGPRILRTETA 231
>gi|398910431|ref|ZP_10655032.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM49]
gi|398185784|gb|EJM73175.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM49]
Length = 239
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 104/219 (47%), Gaps = 16/219 (7%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR++ D ++LF+G G + + + VV D + +
Sbjct: 26 YISRVLRMAEGDALQLFDGSGQEFRARLVEVGKK--RVVVQIDESFAGQVESPLQIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G +G R DW ++K TELG +TP+ TE + L+ + D L ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVTEITPIFTERCEVRLKDER-ADKRLL----HWRQVAISAC 138
Query: 180 VYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGP 239
G R V++PP+ + L +Q+ L V A PLV S SS ++GP
Sbjct: 139 EQCG-RSQVPVIHPPLLLADWLKQ-TQAGLKLVLHPVAEPLV----SHAKPSSLAFLIGP 192
Query: 240 EGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
EG ++ EV++ +G A LGP LR ETA + LA
Sbjct: 193 EGGLSDAEVDQAKASGFHAARLGPRVLRTETAPVVALAV 231
>gi|347536274|ref|YP_004843699.1| hypothetical protein FBFL15_1389 [Flavobacterium branchiophilum
FL-15]
gi|345529432|emb|CCB69462.1| Protein of unknown function [Flavobacterium branchiophilum FL-15]
Length = 234
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 104/229 (45%), Gaps = 22/229 (9%)
Query: 57 EGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQW 116
+ +E H+ KVLR ND + + NGKG L E C ++ V + D K + P+ +
Sbjct: 19 DKEESKHIIKVLRKKLNDILYVTNGKGFLFE-CEIILESESKCTVHINDCKEISPKKYKI 77
Query: 117 NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIAN 176
++ A T R +W +EK TE+G +TP++ + H + + I ++ F
Sbjct: 78 HLAVA-PTKMNERFEWFLEKATEIGIDEITPIICD-HSERKIIKNDRF------------ 123
Query: 177 SAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAF-----VAIAEATPLVTALSSSRNES 231
+ + P K++ +PL + K F +A E T S ++
Sbjct: 124 EKIILAAMKQSNQYYLP--KLNAAIPLKTFLKQTFEGQKYIAHCENDQKNTLKSVMKSNH 181
Query: 232 SGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
+ L+++GPEGDF+ E+ + V LG RLR ETA I +++
Sbjct: 182 NILMLIGPEGDFSTSEIQAALAENFVPVSLGNTRLRTETAAIVACHSIV 230
>gi|333376842|ref|ZP_08468578.1| hypothetical protein HMPREF9456_00173 [Dysgonomonas mossii DSM
22836]
gi|332886055|gb|EGK06299.1| hypothetical protein HMPREF9456_00173 [Dysgonomonas mossii DSM
22836]
Length = 234
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 100/229 (43%), Gaps = 23/229 (10%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
+E H KVLR D + L +GKG + I + + V L+ +V P++ + N+
Sbjct: 20 EEAQHCIKVLRKKEGDEIFLTDGKGSFYDAEIIQANPKHCHVNILK--TIVQPKNWKCNI 77
Query: 119 FAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANS 177
AF K R +W EK TE+G +PLL H + R+I
Sbjct: 78 HIAFAPTKNIDRIEWFAEKATEIGVDRFSPLLCH-HSERREIKLQRI-----------EK 125
Query: 178 AFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP-----LVTALSSSRNESS 232
V ++ + +L ++ V Q A IA P L A N
Sbjct: 126 ILVSAMKQSQKAILPQLDEMQSFSKFVKQDFEAQKFIAHCYPSEKKSLKDAYKLGEN--- 182
Query: 233 GLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
LI++GPEGDF+E+EV + ++ G V LG RLR ETA +A ++ +
Sbjct: 183 VLILIGPEGDFSEQEVEEAMKNGFQPVTLGESRLRTETAALAACHSIHV 231
>gi|398975837|ref|ZP_10685863.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM25]
gi|398139829|gb|EJM28817.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM25]
Length = 239
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 106/220 (48%), Gaps = 18/220 (8%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR++ D V++F+G G G + + + VV D + + +
Sbjct: 26 YISRVLRMAEGDAVQMFDGSGHEFRGSLVEVGKK--RVVVQIDEQFAGQIESPLQIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G +G R DW ++K TELG +TP+ +E + L+ + D L ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVNEITPIFSERCEVRLKDER-ADKRLL----HWRQVAISAC 138
Query: 180 VYGGQRLHEMVLNPPMKI-DGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVG 238
G R V++PP+ + D L ++ KL +AE PLV S S+ ++G
Sbjct: 139 EQCG-RSRVPVIHPPVLLADWLKQTEAELKLVLHPVAE--PLV----SHAKPSTLAFLIG 191
Query: 239 PEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
PEG ++ EV + G A LGP LR ETA + LA
Sbjct: 192 PEGGLSDAEVEQAKAKGFHAARLGPRVLRTETAPVVALAV 231
>gi|333383484|ref|ZP_08475143.1| hypothetical protein HMPREF9455_03309 [Dysgonomonas gadei ATCC
BAA-286]
gi|332827614|gb|EGK00356.1| hypothetical protein HMPREF9455_03309 [Dysgonomonas gadei ATCC
BAA-286]
Length = 233
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 112/254 (44%), Gaps = 43/254 (16%)
Query: 47 FFSQGGIVRVE--GDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE 104
FF+ + VE +E H KVLR D + L +GKG + I + + V L+
Sbjct: 6 FFTPDILSNVELPAEEALHCIKVLRKKEGDEILLTDGKGFFYDAEIMQANPKHCMVNILK 65
Query: 105 DLKLVLPQHTQWNVFAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNG 163
++ P+ +N+ AF K R +W EK TE+G ++P+L H + ++I
Sbjct: 66 TIEQ--PKGWNFNLQIAFAPTKNIDRIEWFAEKATEIGIDRLSPILCR-HSERKEI---- 118
Query: 164 FLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMK--IDGLLPLVS--QSKLAFVA------ 213
QR+ E +L MK LLP + QS AF+
Sbjct: 119 ------------------KAQRI-EKILVSAMKQSQKALLPQLDEMQSFPAFIKQEFDGQ 159
Query: 214 --IAEATPLVTALSSSRNESSG--LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVE 269
IA P L + G LI++GPEGDF+E+EV ++ G ++ LG RLR E
Sbjct: 160 KFIAHCYPQEKVLLKDIYKKGGNALILIGPEGDFSEEEVKMAIDHGFKSISLGDSRLRTE 219
Query: 270 TATIALLATLMLCS 283
TA + TL + S
Sbjct: 220 TAALVACHTLHVLS 233
>gi|398964908|ref|ZP_10680612.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM30]
gi|398147710|gb|EJM36409.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM30]
Length = 239
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 106/219 (48%), Gaps = 16/219 (7%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR++ D V+LF+G G G + + + VV D + + +
Sbjct: 26 YISRVLRMAEGDAVQLFDGSGHEFRGALVEVGKK--RVVVQIDEQFAGQIESPLQIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLT---ELHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G +G R DW ++K TELG +TP+ + E+ L+ + D L ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVTEITPIFSDRCEVRLKDER-ADKRLL----HWRQVAISAC 138
Query: 180 VYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGP 239
G R V++PP+ + L S+++L V A PLV S +R + +I GP
Sbjct: 139 EQCG-RSRVPVIHPPVLLTDWLKQ-SEAELKLVLHPVAEPLV---SHARPATLAFLI-GP 192
Query: 240 EGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
EG ++ EV + G A LGP LR ETA + LA
Sbjct: 193 EGGLSDAEVEQAKANGFHAARLGPRVLRTETAPVVALAV 231
>gi|423699841|ref|ZP_17674331.1| 16S rRNA methyltransferase, RsmE family [Pseudomonas fluorescens
Q8r1-96]
gi|387997273|gb|EIK58603.1| 16S rRNA methyltransferase, RsmE family [Pseudomonas fluorescens
Q8r1-96]
Length = 239
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 16/219 (7%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +VLR++ D V++F+G G G + + + + V D + + +
Sbjct: 26 YIGRVLRMAEGDAVQVFDGSGQEFRGTLAEVGKKRVRVQL--DEQFAGQPESPLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G +G R DW ++K TELG +TP+ +E + L+ + D L ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVSEITPIFSERCEVRLKDER-ADKRLL----HWRQVAISAC 138
Query: 180 VYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGP 239
G R V++PP+ + L ++++L V A PLV S S+ ++GP
Sbjct: 139 EQCG-RSSVPVIHPPLLLADWLKQ-TEAELRLVLHPVAEPLV----SHDKPSTLAFLIGP 192
Query: 240 EGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
EG ++ EV + AG A LGP LR ETA + LA
Sbjct: 193 EGGLSDAEVEQAKTAGYHAARLGPRVLRTETAPVVALAV 231
>gi|298373262|ref|ZP_06983251.1| RNA methyltransferase, RsmE family [Bacteroidetes oral taxon 274
str. F0058]
gi|298274314|gb|EFI15866.1| RNA methyltransferase, RsmE family [Bacteroidetes oral taxon 274
str. F0058]
Length = 232
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 96/220 (43%), Gaps = 21/220 (9%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
+E +H TKVLR+ D V++ +GKG + E I D T ++A+ + +
Sbjct: 18 EESYHCTKVLRMREGDVVQVTDGKGNMYEAEIVLPD-TVHTMLAIRSVMSDFGKRRYRLH 76
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSA 178
A T R +WLVEK E+G +TPLL + H + R + + A
Sbjct: 77 LAVAPTKNIDRFEWLVEKAVEIGVDRITPLLCQ-HSERRTVKTER----------LEKIA 125
Query: 179 FVYGGQRLHEMVLNPPMKIDGLLPLV-----SQSKLAFVAIAEATPLVTALSSSRNESSG 233
Q L + KID + S + FVA P + R S
Sbjct: 126 LAAAKQSLKAYI----PKIDPITHFAEITAHSDDEQRFVAHCYDMPKENLFDACRPRQST 181
Query: 234 LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
++++GPEGDF+ +EV + AG +V L RLR ETA I
Sbjct: 182 VVLIGPEGDFSTEEVELALTAGFRSVSLSDSRLRTETAGI 221
>gi|330812331|ref|YP_004356793.1| RNA methyltransferase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327380439|gb|AEA71789.1| putative RNA methyltransferase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 239
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 16/219 (7%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +VLR++ D V++F+G G G + + + + V D + + +
Sbjct: 26 YIGRVLRMAEGDAVQVFDGSGQEFRGTLAEVGKKRVRVQL--DEQFAGQPESPLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G +G R DW ++K TELG +TP+ +E + L+ + D L ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVSEITPIFSERCEVRLKDER-ADKRLL----HWRQVAISAC 138
Query: 180 VYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGP 239
G R V++PP+ + L ++++L V A PLV S S+ ++GP
Sbjct: 139 EQCG-RSSVPVIHPPLLLADWLKQ-TEAELRLVLHPVAEPLV----SHDKPSTLAFLIGP 192
Query: 240 EGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
EG ++ EV + AG A LGP LR ETA + LA
Sbjct: 193 EGGLSDAEVEQAKTAGYHAARLGPRVLRTETAPVVALAV 231
>gi|158521743|ref|YP_001529613.1| hypothetical protein Dole_1732 [Desulfococcus oleovorans Hxd3]
gi|158510569|gb|ABW67536.1| protein of unknown function DUF558 [Desulfococcus oleovorans Hxd3]
Length = 245
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 102/232 (43%), Gaps = 13/232 (5%)
Query: 53 IVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQ 112
I + G + H+ VLR+ D + LFNG G +G I +D + V
Sbjct: 15 ICPITGPDANHIKNVLRMKPGDAIWLFNGAGMEFKGVIHSVDSEAVTVEITGAFSCATES 74
Query: 113 HTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHL---QSRKIGDNGFLSCNF 169
+ + AF LK + D LV + TELG P+ T+ + +R++
Sbjct: 75 PIRLTLAQAF--LKDKKMDALVRQATELGVTRWIPVFTQRTIPRPDARRVSSR----MER 128
Query: 170 YYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFV-AIAEATPLVTALSSSR 228
+ A S G RL E + PP+ + LL L + A A+A L L S
Sbjct: 129 WQAIAAESLKQCGRGRLPE--IEPPILFEDLLSRSDDWSLKIIFADAKAPGLNDTLPSQE 186
Query: 229 NE-SSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
L+++GPEG FT +E+++ ++ G A LGP L+ +TAT+ A +
Sbjct: 187 ATVRRVLVMIGPEGGFTPEEIDRAIKKGFIAASLGPRILKADTATVGACAIV 238
>gi|212638681|ref|YP_002315201.1| hypothetical protein Aflv_0838 [Anoxybacillus flavithermus WK1]
gi|212560161|gb|ACJ33216.1| Uncharacterized protein conserved in bacteria [Anoxybacillus
flavithermus WK1]
Length = 252
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 111/251 (44%), Gaps = 24/251 (9%)
Query: 44 IPRFFSQ-----GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRI--DRT 96
+ R+F + G V + GD+ H+ +V+R++ DR+ N + + I++I D
Sbjct: 4 LQRYFVRNEQIVGDHVMISGDDVHHIGRVMRMNEGDRLLCCNERSETMLCEIEQISNDFV 63
Query: 97 GLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHL-- 154
++ + + LP H V+ A G LKG + + +++K TELGA+ PL+T +
Sbjct: 64 RCRIIQWIEANVELPVH----VYVASGLLKGDKYELVLQKGTELGAKGFLPLITSRSIVK 119
Query: 155 QSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI 214
K GD + + +A R + + PM I L+ +A
Sbjct: 120 WDEKKGDK---KVERWQKIVKEAA--EQSHRAYMPSVYAPMTIRELIAWAHDIHYKCIAY 174
Query: 215 AEATP------LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRV 268
E L + E S LI+ GPEG +E+EV + E G A LGP LR
Sbjct: 175 EEEAKEGHHRSFAHLLQTMNKEDSLLIVFGPEGGLSEQEVALLKEHGFVACSLGPRILRA 234
Query: 269 ETATIALLATL 279
ETA + L+ +
Sbjct: 235 ETAPLYALSAV 245
>gi|422638960|ref|ZP_16702390.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae Cit
7]
gi|440742987|ref|ZP_20922309.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae
BRIP39023]
gi|330951354|gb|EGH51614.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae Cit
7]
gi|440376838|gb|ELQ13501.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae
BRIP39023]
Length = 239
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 104/215 (48%), Gaps = 10/215 (4%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR++ D ++LF+G G G + + + + V E Q + +
Sbjct: 26 YISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKRVHVQLTESF--AGQQESGLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TP+++E ++ D ++ IA SA
Sbjct: 84 GLSRGERMDWAIQKATELGVSEITPIVSER--CEVRLKDERAEKRQAHWQQIAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G+ + V++ PM + + +++ L V P+ L+S +S ++GPEG
Sbjct: 142 GRSV-VPVIHAPMPLAEWIKH-TEADLKLVL----HPVAEPLTSHDKPASLAFLIGPEGG 195
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
+ EV++ +AG A LGP LR ETA + L+
Sbjct: 196 LNDAEVDQAQDAGFHAARLGPRVLRTETAPVVALS 230
>gi|345871321|ref|ZP_08823267.1| Ribosomal RNA small subunit methyltransferase E [Thiorhodococcus
drewsii AZ1]
gi|343920484|gb|EGV31215.1| Ribosomal RNA small subunit methyltransferase E [Thiorhodococcus
drewsii AZ1]
Length = 245
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 97/219 (44%), Gaps = 12/219 (5%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCI--QRIDRTGLDVVALEDLKLVLPQHTQWNVFA 120
H+T+VLRL +D + LFNG G I D T + V A+ D + P +
Sbjct: 27 HLTQVLRLGQDDPLVLFNGDGFDYSARILSTHKDGTRVSVEAVGDREPDAP----IEIHL 82
Query: 121 AFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFV 180
A G KG R D+ ++K ELG ++TPL T Q R G + G + +
Sbjct: 83 ALGVSKGERMDFALQKAVELGVGAITPLFTA-RSQVRLDGPRLERRLEHWRGILTAACEQ 141
Query: 181 YGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPE 240
G +RL LN D L S+ K + +TPL R E+ +++GPE
Sbjct: 142 SGRRRLPS--LNAAATFDTWLKSPSRGKGLLLDPTASTPLA---GLKRPETGVTLLIGPE 196
Query: 241 GDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
G + E K G V LGP LR ETA +A +A +
Sbjct: 197 GGLSPGEREKAYATGYQGVRLGPRILRTETAPLATIAVI 235
>gi|126727781|ref|ZP_01743611.1| hypothetical protein RB2150_10474 [Rhodobacterales bacterium
HTCC2150]
gi|126702908|gb|EBA02011.1| hypothetical protein RB2150_10474 [Rhodobacterales bacterium
HTCC2150]
Length = 246
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 115/237 (48%), Gaps = 22/237 (9%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDR-TGLDVVALEDL 106
+QG + +E D+ ++ V+R D VELFNG+ G G + ++ G+ V +
Sbjct: 13 LAQGHNIPLERDQAHYLFGVMRRKLGDEVELFNGRDGEWRGKVVHANKHRGILEVTHQTR 72
Query: 107 KLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTEL----HLQSRKIGDN 162
L +P +++ F +K R D++VEK TE+GA + P++TE ++ K+ +
Sbjct: 73 PLQMPP----DLWLMFAPIKKARTDFIVEKATEMGAARIVPVMTEYTNSDRVRQEKMQIH 128
Query: 163 GFLSCNFYYG-FIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLV 221
+ G ++ A + Q+L M+ N P DG L L I T L
Sbjct: 129 AVEAAEQCGGTYVPEVAEL---QKLDRMLDNWP---DGRQLLFCDEGL----IGRPTGLD 178
Query: 222 TALSSSRNESSGL-IIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLRVETATIALL 276
+ ++ N++ I++GPEG F+EKE N++ T LGP LR +TA +A L
Sbjct: 179 QSKLTAVNKTGPWAILIGPEGGFSEKERNRLASLDFVTTQSLGPRILRADTAAVAAL 235
>gi|440780679|ref|ZP_20959150.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium pasteurianum
DSM 525]
gi|440221267|gb|ELP60472.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium pasteurianum
DSM 525]
Length = 251
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 113/241 (46%), Gaps = 10/241 (4%)
Query: 44 IPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVAL 103
+P G I + GD+ H+ KVLRL D++ + N KG I+ ID+ + +
Sbjct: 6 VPENNMDGKIATITGDDVKHIYKVLRLKAGDKININNYKGKEFVAEIRSIDKAAVICNII 65
Query: 104 EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNG 163
E++ + +++ A K + + +++K TELG S+ P++T+ + + G++
Sbjct: 66 EEVNADNESSIKIHLYQALP--KASKMELIIQKATELGVISIIPVITKRVVVKNEFGESK 123
Query: 164 FLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP--LV 221
+ + IA A + L V N + + L V + L V +
Sbjct: 124 KID---RWNKIALEACKQSKRTLIPKVKN-TIDFNEFLEEVKEFDLIVVPYENEKNHGIK 179
Query: 222 TALSSSRNE--SSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
+S+ R+ ++ I+VGPEG F ++E+ ++ E GA V LGP LR ETA + +
Sbjct: 180 NMISNIRDRYITNVAIMVGPEGGFEDEEIKRLEEVGAYIVTLGPRILRTETAGFVCSSLI 239
Query: 280 M 280
M
Sbjct: 240 M 240
>gi|409418367|ref|ZP_11258363.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas sp. HYS]
Length = 239
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 100/216 (46%), Gaps = 10/216 (4%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +VLR++ D V+LF+G G G + + + + V D + V
Sbjct: 26 YIGRVLRMAAGDAVQLFDGSGQEFRGQLLEVGKKTVRVQL--DEAFAGQADSSLQVHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG ++TP+++E ++ D ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVSAITPIVSERC--EVRLKDERADKRLAHWRQVAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G+ ++ P + D L KL +AE P+V S + +S ++GPEG
Sbjct: 142 GRSSVPVIHPPQLLADWLKACDEDLKLVLHPVAE--PMV----SHQKPASLAFLIGPEGG 195
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
+E EV + AG A LGP LR ETA + LA
Sbjct: 196 LSEAEVEQAKGAGFHAARLGPRVLRTETAPVVALAV 231
>gi|404450978|ref|ZP_11015953.1| 16S ribosomal RNA methyltransferase RsmE [Indibacter alkaliphilus
LW1]
gi|403763395|gb|EJZ24354.1| 16S ribosomal RNA methyltransferase RsmE [Indibacter alkaliphilus
LW1]
Length = 238
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 102/238 (42%), Gaps = 22/238 (9%)
Query: 50 QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLV 109
Q +++ +E H+ KVLR D+V +GKG L E I ID D +L
Sbjct: 10 QQSNFQLDPEESRHLIKVLRKQQGDKVNFTDGKGCLFECTI--IDSNPKKTTIQIDKRLY 67
Query: 110 LPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNF 169
P + A T R +W+VEK TE+G ++ + +E +S+
Sbjct: 68 TPDDDFYIHLAISPTKNSERMEWMVEKLTEIGVHEISFMESEFSERSK-----------L 116
Query: 170 YYGFIANSAFVYGGQRLHEMV--LNPPMKIDGLLPLVS----QSKLAFVAIAEATPLVTA 223
Y + Q L V LNP + ++ L+ Q +A+V L
Sbjct: 117 KYDRLEKKIKAACKQSLKTRVPKLNPVIPMEDLVRDDKFNEYQRFIAYVDKENDRHLFQK 176
Query: 224 LSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
L R + LI++GPEGDF+++E+ + LG RLR ETA +A + T+ +
Sbjct: 177 LEKDR---AYLILIGPEGDFSKQELQLAFDHLFLPCSLGKSRLRSETAALAAVHTIQM 231
>gi|171320065|ref|ZP_02909134.1| protein of unknown function DUF558 [Burkholderia ambifaria MEX-5]
gi|171094694|gb|EDT39739.1| protein of unknown function DUF558 [Burkholderia ambifaria MEX-5]
Length = 262
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 110/246 (44%), Gaps = 35/246 (14%)
Query: 44 IPRFFSQGGIVRVEGD-----EFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF + + R + E +VLRL D + LF+G GG + ID+
Sbjct: 17 VPRFFVEAAL-RADATLTLPAEVARHAQVLRLQPGDTLALFDGSGGQYRARLVEIDKRN- 74
Query: 99 DVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
AL ++ P + + V A G G + DW++EK ELG +V PL T +
Sbjct: 75 ---ALAQIEAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLST-VRGVV 130
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMV--------LN--PPMKIDGLLPLV-- 204
+ G+ + G + S G R+ ++ L+ PP DG L L+
Sbjct: 131 KLSGERADKRVAHWRGVVRASCEQCGRNRVPDVAPVRGFGAWLDSLPPAPADGELRLLLS 190
Query: 205 SQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPH 264
++ + FV++ +A P TA++ +++GPEG + E N G TA+ LGP
Sbjct: 191 PRASIPFVSLPDAPP-ATAVT---------LLIGPEGGLSPDEENAARAHGFTALSLGPR 240
Query: 265 RLRVET 270
LR ET
Sbjct: 241 VLRTET 246
>gi|346225989|ref|ZP_08847131.1| ribosomal RNA small subunit methyltransferase E [Anaerophaga
thermohalophila DSM 12881]
gi|346226986|ref|ZP_08848128.1| ribosomal RNA small subunit methyltransferase E [Anaerophaga
thermohalophila DSM 12881]
Length = 240
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 100/239 (41%), Gaps = 27/239 (11%)
Query: 45 PRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKG----GLIEGCIQRIDRTGLDV 100
P + GG++ E E H KVLR + D + + NGKG G I + R ++
Sbjct: 7 PEILTNGGLLNEE--ESHHCIKVLRHNKGDTIHVINGKGVRAIGTITEATAKACRIRIEN 64
Query: 101 VALEDLKLVLPQHTQWNVFAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
+E+ + A K R +W +EK TELG +TPLL H RK
Sbjct: 65 TEIEN-------EPEGKCHIAIAPTKSIDRFEWFLEKSTELGIDKITPLLC--HQSERK- 114
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIA---E 216
+A RL + + I L L ++A E
Sbjct: 115 ------HIRLQRLERVLTAATKQSLRLWKPEITELTNIQDFLNSALPEPLKYIAYCDNQE 168
Query: 217 ATPLVTALSSSRNESSG-LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274
A + L +R +S G LI++GPEGDF+E EV E G V LG +RLR ETA IA
Sbjct: 169 AQQYLPDLLKNRKDSDGVLILIGPEGDFSESEVLLAKEKGFIPVSLGKNRLRTETAGIA 227
>gi|331007217|ref|ZP_08330426.1| Ribosomal RNA small subunit methyltransferase E [gamma
proteobacterium IMCC1989]
gi|330418984|gb|EGG93441.1| Ribosomal RNA small subunit methyltransferase E [gamma
proteobacterium IMCC1989]
Length = 257
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 121/267 (45%), Gaps = 36/267 (13%)
Query: 41 RGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFN-----GKGGLIEGCIQRIDR 95
R IP S+ + ++ H+ V+R+ +V LFN G+ G + +D+
Sbjct: 5 RIYIPLPLSEHTQIELDKASMHHLVTVMRMKVGRQVILFNNVPIDGRYGEFTATLASVDK 64
Query: 96 TGLDVVALEDL-KLVLPQ-HTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLL---T 150
V D+ + V PQ + V +K R DWL++K TELG +TPL T
Sbjct: 65 KQARV----DIGEFVSPQIESPLQVHLGACLIKNDRMDWLLQKATELGVSEITPLFSQYT 120
Query: 151 ELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLA 210
++ L + +I + + N+ G RL VL+ P+ ++ + + +
Sbjct: 121 DVKLPAERIEKK----MGHWRKIVINACEQSGRVRL--PVLHTPLALEKWVASSTHVRQK 174
Query: 211 FV--AIAEATPLVTA-------LSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGL 261
FV A ++P +A LSS N + ++VGPEG TE EV+ V++ + L
Sbjct: 175 FVLHPYASSSPHTSADRPQESSLSSDINAIA--LLVGPEGGLTEDEVDLAVQSQFKGMRL 232
Query: 262 GPHRLRVETATIALLATLMLCSDSQQM 288
GP LR ETA + LA L SQQ+
Sbjct: 233 GPRILRAETAPLVALAVL-----SQQL 254
>gi|312963582|ref|ZP_07778063.1| hypothetical protein PFWH6_5505 [Pseudomonas fluorescens WH6]
gi|311282091|gb|EFQ60691.1| hypothetical protein PFWH6_5505 [Pseudomonas fluorescens WH6]
Length = 239
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 30/225 (13%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQH------TQW 116
++++VLR+ D V+LF+G G G + + + + V L QH +
Sbjct: 26 YISRVLRMGEGDAVQLFDGSGQEFLGTLLEVGKKRVTVQ--------LTQHFAGQAESPL 77
Query: 117 NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNFYYGF 173
++ G +G R DW ++K TELG ++TP+ +E + L+ + D L ++
Sbjct: 78 HIHLGQGLSRGERMDWAIQKATELGVNAITPIFSERCEVRLKDER-ADKRLL----HWRQ 132
Query: 174 IANSAFVYGGQRLHEMVLNPPMKI-DGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESS 232
+A SA G R V++PP+ + D L + KL +AE P+V S SS
Sbjct: 133 VAISACEQCG-RSTVPVIHPPLLLADWLKQTEADLKLVLHPVAE--PMV----SHAKPSS 185
Query: 233 GLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
++GPEG T+ EV AG A LGP LR ETA + LA
Sbjct: 186 LAFLIGPEGGLTDNEVETAQGAGYHAARLGPRVLRTETAPVVALA 230
>gi|398928774|ref|ZP_10663658.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM48]
gi|398167865|gb|EJM55900.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM48]
Length = 239
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 103/219 (47%), Gaps = 16/219 (7%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR++ D ++LF+G G + + + VV D + +
Sbjct: 26 YISRVLRMAEGDALQLFDGSGQEFRARLVEVGKK--RVVVQIDESFAGQIESPLQIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G +G R DW ++K TELG +TP+ TE + L+ + D L ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVSEITPIFTERCEVRLKDER-ADKRLL----HWRQVAISAC 138
Query: 180 VYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGP 239
G R V++PP+ + L +Q+ L V A PLV S SS ++GP
Sbjct: 139 EQCG-RSRVPVIHPPLLLADWLKQ-TQAGLKLVLHPVAEPLV----SHAKPSSLAFLIGP 192
Query: 240 EGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
EG ++ EV++ G A LGP LR ETA + LA
Sbjct: 193 EGGLSDAEVDQAKAGGFHAARLGPRVLRTETAPVVALAV 231
>gi|336314722|ref|ZP_08569638.1| RNA methyltransferase, RsmE family [Rheinheimera sp. A13L]
gi|335881021|gb|EGM78904.1| RNA methyltransferase, RsmE family [Rheinheimera sp. A13L]
Length = 242
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 112/255 (43%), Gaps = 38/255 (14%)
Query: 44 IPRFFSQGGIV-----RVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
IPR + G IV + D H+ +VLR+ D + LFNG G + I +++ L
Sbjct: 3 IPRIYQPGAIVLQQDFSLAEDGANHIGRVLRMQAGDELCLFNGDGLNYQAVITSVEKKQL 62
Query: 99 DVVALED--------LKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLT 150
V A+ LKL L Q G +G R D++++K ELG +TPL T
Sbjct: 63 WVKAISSGDNPVESPLKLHLGQ----------GISRGDRMDFVIQKAVELGVTEITPLFT 112
Query: 151 E---LHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS 207
E + L + ++ + IA +A G+ + +V L+
Sbjct: 113 ERCGVKLDAERLAKR-----TEQWQKIAIAACEQSGRSVVPLVHTAVQLTKWLVQETKDL 167
Query: 208 KLAFVAIAEATPLVT-ALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRL 266
KL P + ++ + + +++GPEG FT+ EV + +AG AV LGP L
Sbjct: 168 KLTL------DPWTSDSIKTIAGSQTIRLVIGPEGGFTDAEVAQTKDAGFMAVRLGPRVL 221
Query: 267 RVETATIALLATLML 281
R ETA + ++ L L
Sbjct: 222 RTETAALTAISALQL 236
>gi|421523629|ref|ZP_15970258.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida LS46]
gi|402752615|gb|EJX13120.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida LS46]
Length = 239
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 110/237 (46%), Gaps = 14/237 (5%)
Query: 46 RFFSQGGIVRVEGD----EFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVV 101
RFF + E D + ++ +VLR++ D V+LF+G G G + + + + V
Sbjct: 5 RFFIDAPLSLGEHDLPEAQAHYIGRVLRMAPGDAVQLFDGSGQEFRGQLLEVGKKTVRVS 64
Query: 102 ALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGD 161
D + +V G +G R DW ++K TELGA +TP+++E ++ D
Sbjct: 65 L--DQAFAGQADSPLHVHLGQGLSRGERMDWAIQKATELGANEITPIVSER--CEVRLKD 120
Query: 162 NGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLV 221
++ +A SA G R V++PP+ + L +++ L V P+
Sbjct: 121 ERADKRLAHWRQVAISACEQCG-RSTLPVIHPPVPLAEWLS-STKADLKLVL----HPVA 174
Query: 222 TALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
L+S ++ ++GPEG +E EV + AG A LGP LR ETA + L+
Sbjct: 175 EPLTSHEKPATLAFVIGPEGGLSEAEVEQAKAAGFHAARLGPRVLRTETAPVVALSV 231
>gi|372221441|ref|ZP_09499862.1| 16S ribosomal RNA methyltransferase RsmE [Mesoflavibacter
zeaxanthinifaciens S86]
Length = 234
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 100/240 (41%), Gaps = 42/240 (17%)
Query: 57 EGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE-DLKLVLPQHTQ 115
+ +E H+ KVLR D + + NGKG L + + + D V LE D K P H
Sbjct: 19 DKEESRHIAKVLRKKEGDALYITNGKGLLFKAELLQADFKKCVVKILETDEKETEPYHLH 78
Query: 116 WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
A T R +W +EK TE+G +TPLL + H + ++I F
Sbjct: 79 ---IAVAPTKMNDRFEWFLEKATEIGISEITPLLCD-HSERKQIKLERF----------- 123
Query: 176 NSAFVYGGQRLHEMVLNPPMK--IDGLLPLVS------------QSKLAFVAIAEATPLV 221
E V+ MK + LP ++ QS+ F+A E T
Sbjct: 124 ------------EKVIQAAMKQSLQTWLPKINPLTTFSEFVTNQQSEQLFIAHCEETERN 171
Query: 222 TALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
S I++GPEGDF+ +E+N + V LG +RLR ETA I T+ L
Sbjct: 172 ALKDCVLPNKSTTILIGPEGDFSSQEINAALCKKYKPVMLGNNRLRTETAAIFACTTVRL 231
>gi|431804807|ref|YP_007231710.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida
HB3267]
gi|430795572|gb|AGA75767.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida
HB3267]
Length = 239
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 112/239 (46%), Gaps = 14/239 (5%)
Query: 44 IPRFFSQGGIVRVEGD----EFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
+ RFF + E D + ++ +VLR++ D V+LF+G G G + + + +
Sbjct: 3 LSRFFIDAPLSLGEHDLPEAQAHYIGRVLRMAPGDAVQLFDGSGQEYRGQLLEVGKKTVR 62
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
V D L + +V G +G R DW ++K TELGA +TP+++E ++
Sbjct: 63 VSL--DQALAGQADSPLHVHLGQGLSRGERMDWAIQKATELGANEITPIVSER--CEVRL 118
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
D ++ +A SA G R V++PP+ + L +++ L V P
Sbjct: 119 KDERADKRLAHWRQVAISACEQCG-RSTLPVIHPPVTLAEWLS-SAKADLKLVL----HP 172
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
+ L+S ++ ++GPEG +E EV + AG A LGP LR ETA + L+
Sbjct: 173 VAEPLTSHAKPATLAFLIGPEGGLSEAEVEQAKAAGFHAARLGPRVLRTETAPVVALSV 231
>gi|398953913|ref|ZP_10675657.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM33]
gi|398153215|gb|EJM41720.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM33]
Length = 239
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 104/219 (47%), Gaps = 16/219 (7%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR++ D ++LF+G G + + + VV D + +
Sbjct: 26 YISRVLRMAEGDALQLFDGSGQEFRARLVEVGKK--RVVVQIDESFTGQIESPLQIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G +G R DW ++K TELG +TP+ TE + L+ + D L ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVSEITPIFTERCEVRLKDER-ADKRLL----HWRQVAISAC 138
Query: 180 VYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGP 239
G R +++PP+ + L +Q++L V A PLV S SS ++GP
Sbjct: 139 EQCG-RSRVPLIHPPLLLADWLK-QTQAELKLVLHPVAEPLV----SHAKPSSLAFLIGP 192
Query: 240 EGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
EG ++ EV++ G A LGP LR ETA + LA
Sbjct: 193 EGGLSDAEVDQAKAGGFHAARLGPRVLRTETAPVVALAV 231
>gi|296124207|ref|YP_003631985.1| hypothetical protein Plim_3975 [Planctomyces limnophilus DSM 3776]
gi|296016547|gb|ADG69786.1| protein of unknown function DUF558 [Planctomyces limnophilus DSM
3776]
Length = 251
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 112/253 (44%), Gaps = 37/253 (14%)
Query: 46 RFFS-------QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
RFF G + +EG E H VLR+ T ++ LF+G G + R R +
Sbjct: 3 RFFHPELLKPLDSGELLLEGSEAHHALHVLRVKTGQQIVLFDGHGNSATAEVIRPGRKDV 62
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
+ + ++ P Q + A T KG R DW+VEK TELG PL+T+ R
Sbjct: 63 GLRIVSGIQHSSPPALQLTLLVA--TPKGDRLDWMVEKLTELGVSRFVPLITQ-----RS 115
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLL---------------PL 203
+ D + ++ R M + P ++ L PL
Sbjct: 116 VVDPRESKLERLRQTVISAC--KQSHRDWLMEIEEPARLTDWLNRKDHPTQWFGSLQAPL 173
Query: 204 VSQSKLAFVAIAEATPLVTALSSSRNESSGL-IIVGPEGDFTEKEVNKIVEAGATAVGLG 262
V++ A ++ P+ +A S E++ L I++GPEG +T +E ++++ +GA V LG
Sbjct: 174 VARK-----ASNDSQPIASANSRMPLENTSLAILIGPEGGWTSEEESQLMTSGARPVRLG 228
Query: 263 PHRLRVETATIAL 275
LR ETA IAL
Sbjct: 229 QFVLRTETAAIAL 241
>gi|146305452|ref|YP_001185917.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas mendocina
ymp]
gi|145573653|gb|ABP83185.1| 16S rRNA m(3)U-1498 methyltransferase [Pseudomonas mendocina ymp]
Length = 241
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 106/219 (48%), Gaps = 16/219 (7%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +VLR + D ++LF+G G G + + + + V E + + + +
Sbjct: 26 YIGRVLRHAVGDALQLFDGSGQEYLGELIEVGKKSVRVELREAIAGM--SESPLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLT---ELHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G +G R DW ++K TELGA +TP+++ E+ L+ + ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGAAEITPIVSARCEVRLKDERADKR-----MAHWRQVAISAC 138
Query: 180 VYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGP 239
G+ + ++ NPP+++ L + ++ L V P+ L S +S +VGP
Sbjct: 139 EQCGRSVLPLI-NPPLELAAWLQQI-EADLKLVL----HPVAAPLQSHDKPNSLAFLVGP 192
Query: 240 EGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
EG +E EV++ AG A LGP LR ETA + L+
Sbjct: 193 EGGLSEAEVDQTKAAGFHAARLGPRVLRTETAPVVALSV 231
>gi|392546372|ref|ZP_10293509.1| 16S ribosomal RNA methyltransferase RsmE [Pseudoalteromonas rubra
ATCC 29570]
Length = 244
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 114/249 (45%), Gaps = 25/249 (10%)
Query: 44 IPRFFSQGGIVRVEG-----DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
IP + +V E D H+ +VLR+ D + LFNG+GG I + + +
Sbjct: 3 IPHIYQPSDLVIGEAIDLGDDAAGHVARVLRMGEGDTLSLFNGQGGEYLATISEVSKKKV 62
Query: 99 DVVALE--DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
V+ + D ++ P ++ G +G + D+ ++K ELG +TPL T +
Sbjct: 63 RVMPEQFIDKQVESP----LSIHLGQGISRGDKMDFTIQKSVELGITEITPLFT-----T 113
Query: 157 R---KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS-KLAFV 212
R K+ + + IA +A G R ++PP+ ID L S++ KL
Sbjct: 114 RCGVKLSGERLAKKHQQWQKIAIAAAEQSG-RNTITTIHPPISIDDWLAQTSEALKLTLH 172
Query: 213 AIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
AE + + L + E +VGPEG FT++E+ + G + LGP LR ETA
Sbjct: 173 PRAEHS--IKTLPAP--EHGVRFLVGPEGGFTDEEMAATAQQGFIDIRLGPRVLRTETAA 228
Query: 273 IALLATLML 281
+ +L+ L L
Sbjct: 229 LTVLSALQL 237
>gi|295134596|ref|YP_003585272.1| RNA methyltransferase [Zunongwangia profunda SM-A87]
gi|294982611|gb|ADF53076.1| RNA methyltransferase [Zunongwangia profunda SM-A87]
Length = 237
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 104/230 (45%), Gaps = 15/230 (6%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
+E H+ KVLR S +++ NGKG L I D ++ K P + W
Sbjct: 21 EESKHIIKVLRRSEGALLKVTNGKGLLFTAQIINADIKQCVAKIIDTEKQAKPNY--WLH 78
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSA 178
A T R +W +EK TE+G +TP++ E H + + + + Y + SA
Sbjct: 79 LAVAPTKMNDRYEWFLEKATEIGVDEITPVICE-HSERKVVKLDR-------YERVLQSA 130
Query: 179 FVYGGQRLHEMV--LNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLII 236
Q LH + LN P+ + +++ + P V ++ + LI+
Sbjct: 131 M---KQSLHFRMPKLNEPVDFTAFIEKQFEAEKFIAHCEDDQPRVLLQHAATAVADTLIL 187
Query: 237 VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSDSQ 286
+GPEGDF+ +E+ + + V LG +RLR ETA I T+ L ++++
Sbjct: 188 IGPEGDFSPEEIRLALTNKFSPVSLGSNRLRTETAAIVACHTINLLNETK 237
>gi|56461316|ref|YP_156597.1| 16S ribosomal RNA methyltransferase RsmE [Idiomarina loihiensis
L2TR]
gi|56180326|gb|AAV83048.1| Uncharacterized conserved protein [Idiomarina loihiensis L2TR]
Length = 243
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 104/242 (42%), Gaps = 15/242 (6%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PR + I + D F H+ KVLRL+ D + LFNG G E I + +
Sbjct: 3 VPRIYHPASISLQNETELSADAFQHLIKVLRLNVGDSIVLFNGDGQNYEAKITSVQKKSA 62
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
VA + N+ A +G R D++++K ELG +TPL +E K
Sbjct: 63 QFVATSSQANA--SESPVNIHLAQVVSRGDRMDFVLQKSVELGVTEITPLFSERC--GVK 118
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT 218
+ + + I +SA G+ + V P ++ + S + +
Sbjct: 119 LSGDRLEKKQLQWQKIVHSACEQCGRSVVPQV-KPAQQLTDFIA----SSFEGLRLTLDP 173
Query: 219 PLVTALSSSRNESSGL-IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
LSS + G+ +++GPEG FT+ EV+ + G + LGP LR ETA ++ L
Sbjct: 174 TATQPLSSFQQAEKGIQLLIGPEGGFTDTEVSAAGQLGFKPMRLGPRILRTETAALSALT 233
Query: 278 TL 279
+
Sbjct: 234 AV 235
>gi|408479486|ref|ZP_11185705.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas sp. R81]
Length = 239
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 101/218 (46%), Gaps = 16/218 (7%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR+ D V+LF+G G G + + + + V E + +
Sbjct: 26 YISRVLRMGEGDAVQLFDGSGLEFRGSLLEVGKKRVTVQLTESFSG--QTESPLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLT---ELHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G +G R DW ++K TELG +TP+ + E+ L+ + D ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVSEITPIFSDRCEVRLKDER-ADKRLQ----HWRQVAISAC 138
Query: 180 VYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGP 239
G+ ++ P + +D L + KL +AE P+V S SS ++GP
Sbjct: 139 EQCGRSTVPVIHPPLLLVDWLKQTQADLKLVLHPVAE--PMV----SHAKPSSLAFLIGP 192
Query: 240 EGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
EG T+ EV+ AG A LGP LR ETA + LA
Sbjct: 193 EGGLTDLEVDTAQAAGYHAARLGPRVLRTETAPVVALA 230
>gi|148550061|ref|YP_001270163.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida F1]
gi|395445834|ref|YP_006386087.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida ND6]
gi|148514119|gb|ABQ80979.1| 16S rRNA m(3)U-1498 methyltransferase [Pseudomonas putida F1]
gi|388559831|gb|AFK68972.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida ND6]
Length = 239
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 110/237 (46%), Gaps = 14/237 (5%)
Query: 46 RFFSQGGIVRVEGD----EFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVV 101
RFF + E D + ++ +VLR++ D V+LF+G G G + + + + V
Sbjct: 5 RFFIDAPLSLGEHDLPEAQAHYIGRVLRMAPGDAVQLFDGSGQEYRGQLLEVGKKTVRVS 64
Query: 102 ALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGD 161
D + +V G +G R DW ++K TELGA +TP+++E ++ D
Sbjct: 65 L--DQAFAGQADSPLHVHLGQGLSRGERMDWAIQKATELGANEITPIVSER--CEVRLKD 120
Query: 162 NGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLV 221
++ +A SA G R V++PP+ + L +++ L V P+
Sbjct: 121 ERADKRLAHWRQVAISACEQCG-RSTLPVIHPPVPLAEWLS-STKADLKLVL----HPVA 174
Query: 222 TALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
L+S ++ ++GPEG +E EV + AG A LGP LR ETA + L+
Sbjct: 175 EPLTSHEKPATLAFVIGPEGGLSEAEVEQAKAAGFHAARLGPRVLRTETAPVVALSV 231
>gi|386821127|ref|ZP_10108343.1| RNA methyltransferase, RsmE family [Joostella marina DSM 19592]
gi|386426233|gb|EIJ40063.1| RNA methyltransferase, RsmE family [Joostella marina DSM 19592]
Length = 234
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 103/231 (44%), Gaps = 16/231 (6%)
Query: 45 PRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE 104
P S + +E H++KVLR D + + NGKG L + I D VV ++
Sbjct: 7 PELESNAQQFTFDKEESRHISKVLRKKEGDTLYITNGKGWLFDAEIINADIKNC-VVTIK 65
Query: 105 DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGF 164
D L ++ ++ A T R +W +EK TE+G +TP++ + H + + I
Sbjct: 66 DANLKYKKNYYLHMAVA-PTKMNDRFEWFLEKATEIGIDEITPIICD-HSERKTIKIER- 122
Query: 165 LSCNFYYGFIANSAFVYGGQRLHEMV--LNPPMKIDGLLPLVSQSKLAFVAIAEATPLVT 222
Y I +A Q L+ + LN + L + +L F+A E
Sbjct: 123 ------YEKILQAAM---KQSLNCYLPKLNDAINFTSFLDEKREGQL-FIAHCEEQEKYD 172
Query: 223 ALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
++ LI++GPEGDF+ E+ V+ G T V L +RLR ETA I
Sbjct: 173 LKRKIMADNKVLILIGPEGDFSLNEIKTAVDHGFTPVSLSDNRLRTETAAI 223
>gi|422346692|ref|ZP_16427606.1| RsmE family RNA methyltransferase [Clostridium perfringens
WAL-14572]
gi|373226237|gb|EHP48564.1| RsmE family RNA methyltransferase [Clostridium perfringens
WAL-14572]
Length = 250
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 105/222 (47%), Gaps = 12/222 (5%)
Query: 55 RVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHT 114
++ G++ H+ KVLR+ ++V + N + G ++ +++ + + LE KL + +
Sbjct: 17 KITGEDVKHIYKVLRVKPGEKVVVNNLESEEFLGEVEEVNKQEVSIKILE--KLDVNNES 74
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
N+ G K + D +V+KC ELG + P +T+ + + G+ L I
Sbjct: 75 NLNITLFQGMPKAAKMDLIVQKCVELGVSEIIPTITD-RVDVKLKGEFKKLD---RLNKI 130
Query: 175 ANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT-----PLVTALSSSRN 229
A A + + VL P M G+L + + L + AT +V ++ + +
Sbjct: 131 ALEACKQSKRTVIPQVLEP-MDFKGVLEKIDELDLMVIPYENATGYGIRAMVNSIENKDS 189
Query: 230 ESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA 271
+ I+VGPEG F E E+ + E GA V LGP LR ETA
Sbjct: 190 IKNVGIMVGPEGGFEESEIEALKEKGAHIVTLGPRILRTETA 231
>gi|422651616|ref|ZP_16714409.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|330964692|gb|EGH64952.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 239
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 105/216 (48%), Gaps = 12/216 (5%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQ-HTQWNVFAA 121
++++VLR++ D ++LF+G G G + + G V ++ K Q + +
Sbjct: 26 YISRVLRMTEGDALQLFDGSGQEFRGTLLEV---GKKRVRVQLNKCFAGQVESGLRIHLG 82
Query: 122 FGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVY 181
G +G R DW ++K TELG +TP+++E ++ D ++ IA SA
Sbjct: 83 QGLSRGERMDWAIQKATELGVSEITPIVSERC--EVRLKDERAEKRQAHWQQIAISACEQ 140
Query: 182 GGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEG 241
G+ + V++PPM + + L +++ L V P+ L+S S ++GPEG
Sbjct: 141 CGRSVVP-VIHPPMTLADWIKL-TEADLKLVL----HPVAEPLTSHAKPVSLAFLIGPEG 194
Query: 242 DFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
+ EV++ AG A LGP LR ETA + L+
Sbjct: 195 GLNDAEVDQAQTAGFHAARLGPRVLRTETAPVVALS 230
>gi|398992125|ref|ZP_10695172.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM24]
gi|399013719|ref|ZP_10716022.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM16]
gi|398112961|gb|EJM02813.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM16]
gi|398134102|gb|EJM23276.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM24]
Length = 239
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 108/222 (48%), Gaps = 22/222 (9%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDL--KLVLPQHTQWNVFA 120
++++VLR++ D V+LF+G G G + + + + V E ++ P H +
Sbjct: 26 YISRVLRMAEGDAVQLFDGSGHEFRGALLEVGKKRVTVQIDEQFAGQVESPLH----IHL 81
Query: 121 AFGTLKGGRADWLVEKCTELGAQSVTPLLT---ELHLQSRKIGDNGFLSCNFYYGFIANS 177
G +G R DW ++K TELG +TP+ + E+ L+ + D L ++ +A S
Sbjct: 82 GQGLSRGERMDWAIQKATELGVNEITPIFSDRCEVRLKDER-ADKRLL----HWRQVAIS 136
Query: 178 AFVYGGQRLHEMVLNPPMKI-DGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLII 236
A G R V++PP+ + D + ++ KL +AE PLV S ++ +
Sbjct: 137 ACEQCG-RSRVPVIHPPVLLADWIKQTEAELKLVLHPVAE--PLV----SHAKPATLAFL 189
Query: 237 VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
+GPEG T+ EV + G A LGP LR ETA + LA
Sbjct: 190 IGPEGGLTDAEVEQAKGNGFHAARLGPRVLRTETAPVVALAV 231
>gi|422874942|ref|ZP_16921427.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium perfringens
F262]
gi|380304137|gb|EIA16429.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium perfringens
F262]
Length = 250
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 104/222 (46%), Gaps = 12/222 (5%)
Query: 55 RVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHT 114
++ G++ H+ KVLR+ ++V + N + G ++ +++ + + LE KL + +
Sbjct: 17 KITGEDVKHIYKVLRVKPGEKVVVNNLESEEFLGEVEEVNKQEVSIKILE--KLDVNNES 74
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
N+ G K + D +V+KC ELG + P +T+ + + G+ L I
Sbjct: 75 NLNITLFQGMPKAAKMDLIVQKCVELGVSEIIPTITD-RVDVKLKGEFKKLD---RLNKI 130
Query: 175 ANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT-----PLVTALSSSRN 229
A A + + VL P M G+L + + L + AT +V ++ +
Sbjct: 131 ALEACKQSKRTVIPQVLEP-MDFKGVLEKIDELDLMVIPYENATGYGIRAMVNSIEDKDS 189
Query: 230 ESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA 271
+ I+VGPEG F E E+ + E GA V LGP LR ETA
Sbjct: 190 IKNVGIMVGPEGGFEESEIEALKEKGAHIVTLGPRILRTETA 231
>gi|376261396|ref|YP_005148116.1| RsmE family RNA methyltransferase [Clostridium sp. BNL1100]
gi|373945390|gb|AEY66311.1| RNA methyltransferase, RsmE family [Clostridium sp. BNL1100]
Length = 250
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 110/256 (42%), Gaps = 40/256 (15%)
Query: 46 RFFSQ-----GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV 100
R+F + G + + G++F H+ KVLR D V + G G I++I+ + +
Sbjct: 3 RYFVEEAQIANGRINIIGEDFQHLKKVLRAQIKDEVTVCCG-GFDYTAEIEKINDSSISC 61
Query: 101 VALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS---- 156
V + K + +F G K + + +++KC ELG + P++TE +
Sbjct: 62 VITDVNKNFTESPLKVTLFQ--GLPKSDKMELIIQKCVELGVWEIVPVITERCVSRINTD 119
Query: 157 ----------RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQ 206
+KI CN G I N + P+ + + SQ
Sbjct: 120 KDAKNKLARWQKIAREAAKQCN--RGTIPNILY--------------PITFKEAVEMASQ 163
Query: 207 SKLAFVAIAEATPLVTALSSSRNE--SSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPH 264
++LA + + + + R E +SG II+GPEG F EKEV + G + LGP
Sbjct: 164 AELAVIPYEKESAVGLKNIVPRYEGITSGSIIIGPEGGFEEKEVQLAEDRGVKKISLGPR 223
Query: 265 RLRVETATIALLATLM 280
LR ETA + L+ LM
Sbjct: 224 ILRTETAGMVALSLLM 239
>gi|26991662|ref|NP_747087.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida
KT2440]
gi|386014255|ref|YP_005932532.1| hypothetical protein PPUBIRD1_4772 [Pseudomonas putida BIRD-1]
gi|24986759|gb|AAN70551.1|AE016697_6 conserved hypothetical protein TIGR00046 [Pseudomonas putida
KT2440]
gi|313500961|gb|ADR62327.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1]
Length = 239
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 110/237 (46%), Gaps = 14/237 (5%)
Query: 46 RFFSQGGIVRVEGD----EFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVV 101
RFF + E D + ++ +VLR++ D V+LF+G G G + + + + V
Sbjct: 5 RFFIDAPLSLGEHDLPEAQAHYIGRVLRMAPGDAVQLFDGSGQEYRGQLLEVGKKTVRVS 64
Query: 102 ALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGD 161
D + +V G +G R DW ++K TELGA +TP+++E ++ D
Sbjct: 65 L--DQAFAGQADSPLHVHLGQGLSRGERMDWAIQKATELGANEITPIVSER--CEVRLKD 120
Query: 162 NGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLV 221
++ +A SA G R V++PP+ + L +++ L V A PL+
Sbjct: 121 ERADKRLAHWRQVAISACEQCG-RSTLPVIHPPVTLAEWLS-STKADLKLVLHPVAEPLI 178
Query: 222 TALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
S ++ ++GPEG +E EV + AG A LGP LR ETA + L+
Sbjct: 179 ----SHEKPATLAFVIGPEGGLSEAEVEQAKAAGFHAARLGPRVLRTETAPVVALSV 231
>gi|171060614|ref|YP_001792963.1| 16S ribosomal RNA methyltransferase RsmE [Leptothrix cholodnii
SP-6]
gi|170778059|gb|ACB36198.1| protein of unknown function DUF558 [Leptothrix cholodnii SP-6]
Length = 247
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 107/225 (47%), Gaps = 19/225 (8%)
Query: 66 KVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE----DLKLVLPQHTQWNVFAA 121
+VLR+ + + +FNG+GG I R+ R+ + V+ + D +L L +V
Sbjct: 28 QVLRMQPGEELIVFNGQGGEWRVRIARMGRSEVQVLVEQFVDVDRELAL------HVTLV 81
Query: 122 FGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVY 181
G R DWL+EK TELGA + P + E + R G+ + G ++A
Sbjct: 82 AGMPANERFDWLIEKATELGAAEIVPTMCERSV-LRLSGERAQKKREHWQGIAISAAQQC 140
Query: 182 GGQRLHEMV----LNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGL-II 236
G R+ + L+ + V+Q +++A+A PL L++ + + L I
Sbjct: 141 GRTRVPHIAAVRSLSEERAGESADTPVTQ---LLLSLADAQPLGRRLAARADTGAPLRIY 197
Query: 237 VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
GPEG FTE E + + GA LGP LR ETA +A+L+ L L
Sbjct: 198 SGPEGGFTEAEERLLRQGGAQPTSLGPRVLRSETAPLAVLSHLAL 242
>gi|449132194|ref|ZP_21768349.1| Ribosomal RNA small subunit methyltransferase E [Rhodopirellula
europaea 6C]
gi|448888549|gb|EMB18864.1| Ribosomal RNA small subunit methyltransferase E [Rhodopirellula
europaea 6C]
Length = 309
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 134/286 (46%), Gaps = 35/286 (12%)
Query: 20 SLKPLSLRAFSSSSSDY-ANQSRGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVEL 78
+++P + SS+ + A R +P +Q IV++ +E H ++V+R+ T D +EL
Sbjct: 34 TIRPFGIFCISSNFPEPPAMTRRYYVPDLRTQAPIVQLPDEEASHASRVMRVQTGDWIEL 93
Query: 79 FNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCT 138
F+G G + + + + VV + +K V + + A G K RA ++E+ T
Sbjct: 94 FDGCGHQADAEVVTVSKREC-VVRCDAIKAV-DREPSVAIDLAIGLPKPDRAKEMIERLT 151
Query: 139 ELGAQSVTPLLTELHLQSRKIGDNGFL---------SC-----NFYYGFIANSAFVYGGQ 184
ELG V P++ E ++++ + FL SC N + + F +
Sbjct: 152 ELGVARVFPIVFE---RTQRPPKDNFLDKLRRIVIESCKQSGRNVLMTIESPTDFASFAE 208
Query: 185 RLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNE---------SSGLI 235
+ N + +G P S + VA+ ++ PL A+ ++N+ S L
Sbjct: 209 TI---AANNSISDEGDAP--SSWQRVLVAMPDSPPL-NAMDVNQNDMGQSDVNGRPSTLA 262
Query: 236 IVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
++GPEG +E E + ++ GA ++GLG LR+ETA + A L++
Sbjct: 263 LIGPEGGLSEAEHQRCIDIGAESIGLGRRILRIETAAAIVAARLVV 308
>gi|392308141|ref|ZP_10270675.1| 16S ribosomal RNA methyltransferase RsmE [Pseudoalteromonas citrea
NCIMB 1889]
Length = 244
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 103/231 (44%), Gaps = 18/231 (7%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV--VALEDLKLVLPQH 113
++ D H+ +VLR+ ++V LFN +GG I I + + V + ED P H
Sbjct: 20 LDDDAAGHIARVLRMKVGEQVSLFNNQGGEYLCEISEITKKKVSVTPIKFEDKDCESPLH 79
Query: 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR---KIGDNGFLSCNFY 170
V G +G + D+ ++K ELG +TPL T +R K+ +
Sbjct: 80 ----VHLGQGISRGDKMDFTIQKAVELGISEITPLFT-----TRCGVKLSGERLQKKHQQ 130
Query: 171 YGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNE 230
+ IA +A G R ++PP+++ L S + L A + L + E
Sbjct: 131 WQKIAIAAAEQSG-RNTITTIHPPIELHEWLAQDSDA-LKLTLHPRAQHSIKTL--PKPE 186
Query: 231 SSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
+VGPEG FT+ E+ E G V LGP LR ETA + +L+ L L
Sbjct: 187 QGIRFVVGPEGGFTDPEMENTTEQGFIDVRLGPRVLRTETAALTVLSALQL 237
>gi|398852766|ref|ZP_10609410.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM80]
gi|398242954|gb|EJN28554.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM80]
Length = 239
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 108/222 (48%), Gaps = 22/222 (9%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDL--KLVLPQHTQWNVFA 120
++++VLR++ D V+LF+G G G + + + + V E ++ P H +
Sbjct: 26 YISRVLRMAEGDAVQLFDGSGHEFRGTLLEVGKKRVTVQLDEQFAGQVESPLH----IHL 81
Query: 121 AFGTLKGGRADWLVEKCTELGAQSVTPLLT---ELHLQSRKIGDNGFLSCNFYYGFIANS 177
G +G R DW ++K TELG +TP+ + E+ L+ + D L ++ +A S
Sbjct: 82 GQGLSRGERMDWAIQKATELGVNEITPIFSDRCEVRLKDER-ADKRLL----HWRQVAIS 136
Query: 178 AFVYGGQRLHEMVLNPPMKI-DGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLII 236
A G R V++PP+ + D + ++ KL +AE PLV S ++ +
Sbjct: 137 ACEQCG-RSRVPVIHPPVLLADWIKQTEAELKLVLHPVAE--PLV----SHAKPATLAFL 189
Query: 237 VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
+GPEG T+ EV + G A LGP LR ETA + LA
Sbjct: 190 IGPEGGLTDAEVEQAKGNGFHAARLGPRVLRTETAPVVALAV 231
>gi|224538561|ref|ZP_03679100.1| hypothetical protein BACCELL_03455 [Bacteroides cellulosilyticus
DSM 14838]
gi|224519829|gb|EEF88934.1| hypothetical protein BACCELL_03455 [Bacteroides cellulosilyticus
DSM 14838]
Length = 244
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 96/236 (40%), Gaps = 37/236 (15%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWN- 117
+E H +VLRL+ D++ L +GKG I V LE + Q WN
Sbjct: 30 EEAQHCVRVLRLNIGDQITLTDGKGNFYRAEISAATNKRCMVNILE----TIYQEPLWNG 85
Query: 118 --VFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
A T R +W EK TE+G +T FL+C F +
Sbjct: 86 HLHIAMAPTKNMDRTEWFAEKATEIGFDELT-----------------FLNCRFSERKVI 128
Query: 176 NSAFVYG------GQRLHEMV--LNPPMKIDGLL--PLVSQSKLAFVAIAEATPLVTALS 225
+ + Q L + LN + + P Q +A E PL+ +
Sbjct: 129 KTERISKILVSAIKQSLKARLPQLNEMTDFNKFITQPFKGQKFIAHCYEGEK-PLLKDVF 187
Query: 226 SSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
R L+++GPEGDF+EKEV K +E G T + LG RLR ETA + TL L
Sbjct: 188 --RKGEDALVLIGPEGDFSEKEVQKAIENGFTPISLGKSRLRTETAALVACHTLNL 241
>gi|339627000|ref|YP_004718643.1| hypothetical protein TPY_0705 [Sulfobacillus acidophilus TPY]
gi|379008619|ref|YP_005258070.1| ribosomal RNA small subunit methyltransferase E [Sulfobacillus
acidophilus DSM 10332]
gi|339284789|gb|AEJ38900.1| hypothetical protein TPY_0705 [Sulfobacillus acidophilus TPY]
gi|361054881|gb|AEW06398.1| Ribosomal RNA small subunit methyltransferase E [Sulfobacillus
acidophilus DSM 10332]
Length = 230
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 108/243 (44%), Gaps = 15/243 (6%)
Query: 41 RGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV 100
R IP + G VR+ GD+ ++ V+R+ D EL +G L + + D V
Sbjct: 3 RLSIPEAAATGDRVRLSGDDAHYLKTVMRVRPGDSFELLTPEGRLFRAEMGKAD----SV 58
Query: 101 VALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIG 160
+E+L +P ++ A LKG R ++EK TE+G PL+T +R +
Sbjct: 59 AVVEELAPPVPVPIHMTLYQAL--LKGDRMRDVIEKGTEVGISRFVPLVT-----ARTVV 111
Query: 161 DNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPL 220
+ + +A A +R + P L P V S +V + P
Sbjct: 112 REASSAKQQRWQTVAKEA-AEQSRRREVPTVEPVRPWSRLDPAVGGS--WWVLSPQGDPW 168
Query: 221 VTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
++ S R+ + ++VGPEG T+ EV ++V+ GA AV LGP R E A + ++
Sbjct: 169 MSLRSEIRDRALH-VVVGPEGGLTDDEVAQLVDQGAKAVSLGPRIYRAENAGVWAALLVL 227
Query: 281 LCS 283
CS
Sbjct: 228 SCS 230
>gi|345879812|ref|ZP_08831379.1| hypothetical protein HMPREF9431_00043 [Prevotella oulorum F0390]
gi|343920152|gb|EGV30890.1| hypothetical protein HMPREF9431_00043 [Prevotella oulorum F0390]
Length = 240
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 97/235 (41%), Gaps = 27/235 (11%)
Query: 55 RVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHT 114
R+ +E H +VLRL +D + L +GKG + R E+L PQ
Sbjct: 17 RLPPEEAAHALRVLRLKADDEIFLMDGKGRFFRAEVTLTSRQDCCYRITEEL----PQQK 72
Query: 115 QWNVFAAFG---TLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYY 171
WN + T R +W+VEK TE+G +T L T RK N
Sbjct: 73 TWNGYIHLAIAPTKHIDRIEWMVEKATEIGFDELTFLQTAF--TERK---------NIRV 121
Query: 172 GFIANSAFVYGGQRLHEM--VLNPPMKIDGLLPLVSQSKLAFVAIA----EATPLVTALS 225
I Q V+N M + L V F+A E L+ AL
Sbjct: 122 DRIEKIVVAAAKQSRKAWLPVVNDCMSMTEFLN-VPHRGAKFIAHCYDDFEKVDLMAALQ 180
Query: 226 SSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
N + +++VGPEGDF+ +EV + + G +V LG RLR ETA L+A M
Sbjct: 181 RDSNVNEAVVLVGPEGDFSHEEVAQALTKGFQSVSLGNSRLRTETA--GLMAVTM 233
>gi|397693891|ref|YP_006531771.1| hypothetical protein T1E_1122 [Pseudomonas putida DOT-T1E]
gi|397330621|gb|AFO46980.1| hypothetical protein T1E_1122 [Pseudomonas putida DOT-T1E]
Length = 239
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 111/238 (46%), Gaps = 14/238 (5%)
Query: 44 IPRFFSQGGIVRVEGD----EFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
+ RFF + E D + ++ +VLR++ D V+LF+G G G + + + +
Sbjct: 3 LSRFFIDAPLSLGEHDLPEAQAHYIGRVLRMAPGDAVQLFDGSGQEYRGQLLEVGKKTVR 62
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
V D + +V G +G R DW ++K TELGA +TP+++E ++
Sbjct: 63 VSL--DQAFAGQADSPLHVHLGQGLSRGERMDWAIQKATELGANEITPIVSER--CEVRL 118
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
D ++ +A SA G R V++PP+ + L +++ L V P
Sbjct: 119 KDERADKRLAHWRQVAISACEQCG-RSTLPVIHPPVTLAEWLS-STEADLKLVL----HP 172
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
+ L+S ++ ++GPEG +E EV + AG A LGP LR ETA + L+
Sbjct: 173 VAEPLTSHAKPATLAFVIGPEGGLSEAEVEQAKAAGFHAARLGPRVLRTETAPVVALS 230
>gi|376316266|emb|CCF99662.1| RNA methyltransferase, RsmE family [uncultured Dokdonia sp.]
Length = 233
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 101/225 (44%), Gaps = 33/225 (14%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHT---- 114
DE H+ +VLR D + L NG G L + + KL + HT
Sbjct: 21 DESKHVIRVLRKQPGDTIYLTNGNGYLFTAQVYDANPNKC--------KLSITSHTYQEP 72
Query: 115 -QWNVFAAFGTLK-GGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYG 172
+ + A K R +W +EK TE+G +TPLL + H + + I + FL
Sbjct: 73 RDYKLHLAVAPTKLNDRFEWFLEKATEIGVTEITPLLCD-HSERKVIKEERFLK------ 125
Query: 173 FIANSAFVYGGQRLHEMV--LNP--PMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSR 228
I SA Q LH + LNP P K D + S + +A + L + LS +
Sbjct: 126 -ILQSAM---KQSLHYHLPALNPLTPFK-DFITNAHSNTFIAHCEDDTKSLLKSELSPAT 180
Query: 229 NESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
+ + I++GPEGDF+ E+ + ++ T V LG RLR ETA I
Sbjct: 181 DYT---ILIGPEGDFSTTEIQQALQKNITPVSLGHSRLRTETAAI 222
>gi|359776371|ref|ZP_09279686.1| ribosomal RNA small subunit methyltransferase E [Arthrobacter
globiformis NBRC 12137]
gi|359306390|dbj|GAB13515.1| ribosomal RNA small subunit methyltransferase E [Arthrobacter
globiformis NBRC 12137]
Length = 256
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 113/251 (45%), Gaps = 37/251 (14%)
Query: 45 PRFFSQGGIVR---------VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQ---- 91
P FF+ G + ++G E H V RL+ ++V+L +G G I G +
Sbjct: 4 PLFFTPAGALDGTVPGSLFVLDGAEARHAVTVKRLAVGEQVDLADGAGKRITGTVTGAAP 63
Query: 92 ---RIDRTGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPL 148
++ T + V D++LVL Q KG R + +E TELG +V P
Sbjct: 64 AELTVECTSVSVEPRPDVRLVLVQ----------ALAKGDRDELAIETATELGIDAVIPW 113
Query: 149 LTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSK 208
+E + K GD + + +A +A + E+ P + L V+++
Sbjct: 114 QSERSIVRWK-GDRAAKAHGKWQSTVAAAAKQARRAWIPEV--RPAVDTQALAKTVAEAG 170
Query: 209 LAFVAIAEA-TPLVTAL---SSSRNESSG----LIIVGPEGDFTEKEVNKIVEAGATAVG 260
LA + +A TPL L S R E++G L+IVGPEG + +EV ++ AGA
Sbjct: 171 LAVILHEDAVTPLRRVLGKWSEERQEAAGSGEILLIVGPEGGISPREVTRLCSAGAVTAL 230
Query: 261 LGPHRLRVETA 271
LGPH LR TA
Sbjct: 231 LGPHVLRSSTA 241
>gi|348618451|ref|ZP_08884976.1| Putative 16S ribosomal RNA methyltransferase RsmE [Candidatus
Glomeribacter gigasporarum BEG34]
gi|347816251|emb|CCD29721.1| Putative 16S ribosomal RNA methyltransferase RsmE [Candidatus
Glomeribacter gigasporarum BEG34]
Length = 269
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 109/244 (44%), Gaps = 23/244 (9%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
IPRF+ + G + + HM +VLRL D + LFNG GG ++ +D+ +
Sbjct: 2 IPRFYLPQSLTVGAWIALPDAAAQHM-RVLRLKVGDSLSLFNGAGGAFSATVRAMDKKQI 60
Query: 99 --DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
++ A + + W FA GG+ DWL+EK ELG + + PL+T +
Sbjct: 61 QVEITAYDSQAGRAAELPYWITFAQ-AIAGGGKMDWLIEKAVELGVECIVPLMTARSVV- 118
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQ-RLHEMVLNPPM----KIDGLLPLVSQSK--- 208
++ D ++ I+++A G+ R+ E+ PPM +D L P + +
Sbjct: 119 -QLADARAARRRAHWQAISSAACRQCGRYRVPEIA--PPMVFLAWLDTLTPPDATASNPC 175
Query: 209 --LAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRL 266
F+ A+ +L + I+VGPE + E ++ G A+ LGP L
Sbjct: 176 VSTRFLLSPAASCGFESLPLTSPADPVTILVGPESGLDDAEEQAAIKRGFIAIHLGPRIL 235
Query: 267 RVET 270
R ET
Sbjct: 236 RTET 239
>gi|398995115|ref|ZP_10698004.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM21]
gi|398130682|gb|EJM20016.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM21]
Length = 239
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 103/219 (47%), Gaps = 16/219 (7%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR++ D ++LF+G G + + + VV D + +
Sbjct: 26 YISRVLRMAEGDALQLFDGSGHEFRATLVEVGKK--RVVVQIDESFAGQVESPLAIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLT---ELHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G +G R DW ++K TELG +TP+ + E+ L+ + D + ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVTEITPIFSDRCEVRLKDER-ADKRLM----HWRQVAISAC 138
Query: 180 VYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGP 239
G+ ++ P + +D L +Q KL +AE PLV S + ++GP
Sbjct: 139 EQCGRSRVPVIHPPLLLVDWLKQTEAQLKLVLHPVAE--PLV----SHAKPGTLAFLIGP 192
Query: 240 EGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
EG ++ EV++ AG A LGP LR ETA + LA
Sbjct: 193 EGGLSDAEVDQAKSAGFHAARLGPRVLRTETAPVVALAV 231
>gi|296444351|ref|ZP_06886316.1| protein of unknown function DUF558 [Methylosinus trichosporium
OB3b]
gi|296257998|gb|EFH05060.1| protein of unknown function DUF558 [Methylosinus trichosporium
OB3b]
Length = 247
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 108/238 (45%), Gaps = 16/238 (6%)
Query: 33 SSDYANQSRGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQR 92
S D+A Q R + G + +GD ++ VLRL D V LFNG+ G +++
Sbjct: 3 SYDFAAQ-RLFVDERLEAGARMIPDGDRLNYLLNVLRLREGDGVLLFNGRDGEWLARLEK 61
Query: 93 IDRTGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTEL 152
+ R ++VA + Q ++ F LK R D++ +K TE+GA + P++T
Sbjct: 62 VTRRSAELVATTRAR---EQTAPCDLHYCFAPLKHARLDYMAQKATEMGASRLVPIITR- 117
Query: 153 HLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFV 212
Q+R++ + L N A V G + E V +D L + S+L
Sbjct: 118 RTQARRV-NLTRLRANAIEA--AEQCGVLGVPEVAEEV-----SLDAFLAGLCASRLLVF 169
Query: 213 A--IAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATA-VGLGPHRLR 267
AE V AL ++ +I+GPEG F E+E I+ AG A + LGP LR
Sbjct: 170 CDEAAEIADPVAALRAAPEHEGIAVIIGPEGGFDEEERRAILSAGKVARLALGPRILR 227
>gi|421619631|ref|ZP_16060583.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas stutzeri
KOS6]
gi|409778421|gb|EKN58122.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas stutzeri
KOS6]
Length = 238
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 106/216 (49%), Gaps = 11/216 (5%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLRLS V+LF+G G G + + + + +V L + +P+ + +
Sbjct: 26 YISRVLRLSAGSAVQLFDGSGNEFRGELLEVGKKSV-IVELHERLTGMPE-SPLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TP+++E ++ D ++ IA SA
Sbjct: 84 GLSRGERMDWAIQKTTELGVAQITPVVSER--CEVRLSDERADKRLAHWRQIAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G+ + V++ P+ + L + + KL +AE PL S +R ++ +I GPEG
Sbjct: 142 GRSVLP-VIHSPVSLRDWLTVEADLKLVLHPVAE--PLT---SHARPQTLAFLI-GPEGG 194
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
+E EV + G LGP LR ETA + L+
Sbjct: 195 LSESEVEQAANHGFQPARLGPRVLRTETAPVVALSV 230
>gi|429768080|ref|ZP_19300251.1| RNA methyltransferase, RsmE family [Brevundimonas diminuta 470-4]
gi|429189481|gb|EKY30313.1| RNA methyltransferase, RsmE family [Brevundimonas diminuta 470-4]
Length = 239
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 107/220 (48%), Gaps = 15/220 (6%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
D+ ++T+V+RL D + +FNG+ G + + + G+ + A E ++ PQ ++
Sbjct: 21 DQSRYLTQVMRLKAGDELLVFNGRDGEWRVSVAEVLKKGVILRAEEQMR---PQAYGPDL 77
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSA 178
+K R + +VEK ELGA+ V +LT+ R L + +A
Sbjct: 78 ELIVAVVKKARVETIVEKAAELGAKRVRLVLTQRTNADR-------LRLDRLDAIAEEAA 130
Query: 179 FVYGGQRLHEMVLNPPMKIDGLLP-LVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIV 237
G RL V++ P+K+D LL + +L F P +AL+ + + I++
Sbjct: 131 EQTG--RLDVPVVDDPVKLDALLDGWETGRRLMFCDETGGAPAASALTQA-GQGKWAILI 187
Query: 238 GPEGDFTEKEVNKIVEAG-ATAVGLGPHRLRVETATIALL 276
GPEG F+ +E ++ A TAV LGP LR +TA IA +
Sbjct: 188 GPEGGFSPEEGERLRSAPFTTAVSLGPRILRADTAAIAAM 227
>gi|311108286|ref|YP_003981139.1| methyltransferase [Achromobacter xylosoxidans A8]
gi|310762975|gb|ADP18424.1| RNA methyltransferase family protein [Achromobacter xylosoxidans
A8]
Length = 243
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 102/237 (43%), Gaps = 21/237 (8%)
Query: 45 PRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PRFF + G V + H +VLRL + V LFNG+GG ++ + G
Sbjct: 4 PRFFCDIPLTAGARVALPDALAHHALRVLRLRAGEAVALFNGQGGEYPATLEVDGKAGF- 62
Query: 100 VVALEDLKLVLPQHTQW--NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHL 154
L LP+ + + G G + DW+VEK ELGA V P+ + L L
Sbjct: 63 ----AQLGQFLPREAELAGRITLVQGLPSGDKMDWVVEKAVELGAARVCPIAAQRSVLQL 118
Query: 155 QSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI 214
++ ++ IA SA G R M ++ P + L +
Sbjct: 119 SGPRLDKR-----VAHWQRIAQSASEQCG-RNRLMAVDAPFTLADWLQQPADGLRLMCHP 172
Query: 215 AEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA 271
+ L AL + N + ++VGPEG +++KE+ + EAG AV GP LR ETA
Sbjct: 173 EASDDLAGALRAVPNLQALTLLVGPEGGWSDKELAQAREAGVQAVRFGPRVLRTETA 229
>gi|421505464|ref|ZP_15952402.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas mendocina
DLHK]
gi|400343873|gb|EJO92245.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas mendocina
DLHK]
Length = 241
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 108/224 (48%), Gaps = 26/224 (11%)
Query: 63 HMTKVLRLSTNDRVELFNGKG-----GLIEGCIQRID---RTGLDVVALEDLKLVLPQHT 114
++ +VLR + D V+LF+G G LIE + + R LD +A L++ L Q
Sbjct: 26 YIGRVLRHAAGDAVQLFDGSGREFLGELIEVGKKTVRVELREALDGLAESPLRIHLGQ-- 83
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
G +G R DW ++K TELGA +TP+++E ++ D ++ +
Sbjct: 84 --------GLSRGERMDWAIQKATELGASEITPIVSER--CEVRLKDERADKRLAHWRQV 133
Query: 175 ANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGL 234
A SA G+ + V++PP+++ L +++ L V P+ AL S +S
Sbjct: 134 AISACEQCGRSVLP-VIHPPLELSAWLQ-QTEADLKLVL----HPVAEALQSHDKPNSLA 187
Query: 235 IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
++GPEG E EV + AG A LGP LR ETA + L+
Sbjct: 188 FLIGPEGGLNEGEVAQAKLAGFHAARLGPRVLRTETAPVVALSV 231
>gi|333898535|ref|YP_004472408.1| ribosomal RNA small subunit methyltransferase E [Pseudomonas fulva
12-X]
gi|333113800|gb|AEF20314.1| Ribosomal RNA small subunit methyltransferase E [Pseudomonas fulva
12-X]
Length = 239
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 107/220 (48%), Gaps = 18/220 (8%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +VLR + D V+LF+G G G + + + + V E + + ++
Sbjct: 26 YIGRVLRHAAGDAVQLFDGSGQEFLGELIEVGKKSVRVELRE--QFAGQAESPLHIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLT---ELHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G +G R DW ++K TELGAQ ++P+++ E+ L+ + ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGAQVISPIISARCEVRLKDERTDKR-----MAHWRQVAISAC 138
Query: 180 VYGGQRLHEMVLNPPMKI-DGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVG 238
G+ + V++PP+ + D L + KL +AE L+S +S ++G
Sbjct: 139 EQCGRSVIP-VIHPPIVLGDWLQQTSADLKLVLHPVAEP------LTSHAKPASLAFLIG 191
Query: 239 PEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
PEG T+ EV + AG A LGP LR ETA +A LA
Sbjct: 192 PEGGLTDAEVEQAKGAGFHAARLGPRVLRTETAPVAGLAV 231
>gi|283781126|ref|YP_003371881.1| hypothetical protein Psta_3357 [Pirellula staleyi DSM 6068]
gi|283439579|gb|ADB18021.1| protein of unknown function DUF558 [Pirellula staleyi DSM 6068]
Length = 236
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 110/238 (46%), Gaps = 20/238 (8%)
Query: 51 GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRI--DRTGLDVVALEDLKL 108
GI + GDE H+ V+R D V LF+G G + I++ +R L V + D+
Sbjct: 13 AGIAIIAGDEARHLVGVMRAKLGDEVVLFDGCGHEADATIEKTAKERVELRVETVRDV-- 70
Query: 109 VLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCN 168
P+ + A KG R WLVEK ELG ++ PL T+ R + +
Sbjct: 71 --PREFASQLTLAVALPKGDRQKWLVEKLVELGCDALLPLETD-----RGVAQPVESAIE 123
Query: 169 FYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVS-QSKLAFVAIAEATPLVTALSSS 227
+ ++ G L M + P D L + ++ F+ A P +L +
Sbjct: 124 RLKRGVLEASKQSGRALL--MRIEAPASSDTLFSAATVHNQPCFI----AHPGGCSLDQA 177
Query: 228 RNESSG--LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCS 283
++SSG L +GPEG F+++EV +AG V LGP LR+ETA IA+ A ML S
Sbjct: 178 WDQSSGNALFAIGPEGGFSDREVQLAEQAGFQKVSLGPTILRIETAAIAIAALRMLRS 235
>gi|377555828|ref|ZP_09785556.1| hypothetical protein eofBa_02099 [endosymbiont of Bathymodiolus
sp.]
Length = 238
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 116/243 (47%), Gaps = 25/243 (10%)
Query: 46 RFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALED 105
R S G +V ++ H++KVLR + LFNG G ++ + + +D
Sbjct: 10 RALSVGDLVTLDAYASHHLSKVLRFPEGKNITLFNGDG---------MNYSAQVLQTKKD 60
Query: 106 LKLVLPQHTQ------WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
++ + + TQ N+ G KG + D+L++K ELG + P+ T+ H R
Sbjct: 61 CRVKILEKTQNSSESKLNLTLVQGIAKGEKMDFLIQKAVELGVNRIIPVFTQ-HCVVRFK 119
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLL-PLVSQSKLAFVAIAEAT 218
GD ++ I A G+ + VL P D L P+V+ FV
Sbjct: 120 GDK-LAKRQLHWHKIVIGACEQSGRSVIPKVLAPINLRDFLQQPVVN----GFVLHHRCE 174
Query: 219 PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
+ AL++ +E+S I++GPEG +E E+N+ +AG ++ LG LR ETA++A++A
Sbjct: 175 QTLLALTAV-DEAS--ILIGPEGGLSEIEINQANQAGYRSLLLGSRVLRTETASLAVIAN 231
Query: 279 LML 281
+ L
Sbjct: 232 MQL 234
>gi|109899639|ref|YP_662894.1| hypothetical protein Patl_3334 [Pseudoalteromonas atlantica T6c]
gi|109701920|gb|ABG41840.1| 16S rRNA m(3)U-1498 methyltransferase [Pseudoalteromonas atlantica
T6c]
Length = 242
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 104/222 (46%), Gaps = 18/222 (8%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
H+ VLR V LFNG G G + ID + V D KL + + ++
Sbjct: 27 HVANVLRSKVGQPVVLFNGDGNEYSG--EFIDVSKRKVRVQIDAKLSMSLESPLSIHLGQ 84
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW+++K ELG +TPL+TE K+ + + + + I +A
Sbjct: 85 GVSRGDRMDWVLQKSVELGVTEITPLITERC--GVKLDEQRWQKKHAQWQKIIIAACEQC 142
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQS-KLAFVAIAEATPLVTALSSSRNESSG----LIIV 237
G+ + VL+ PM + +Q+ +LA AE S R+ S G +++
Sbjct: 143 GRNVLP-VLHMPMDFQSWVNQSTQALRLALHPRAE--------KSFRHTSVGKDGVRLLI 193
Query: 238 GPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
GPEG F+++E+ + + G V LGP LR ETA I ++ L
Sbjct: 194 GPEGGFSDQELYQTEQGGFQTVQLGPRVLRTETAAITAISAL 235
>gi|18311008|ref|NP_562942.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium perfringens
str. 13]
gi|168208728|ref|ZP_02634353.1| RNA methyltransferase, RsmE family [Clostridium perfringens B str.
ATCC 3626]
gi|168212937|ref|ZP_02638562.1| RNA methyltransferase, RsmE family [Clostridium perfringens CPE
str. F4969]
gi|18145690|dbj|BAB81732.1| conserved hypothetical protein [Clostridium perfringens str. 13]
gi|170712974|gb|EDT25156.1| RNA methyltransferase, RsmE family [Clostridium perfringens B str.
ATCC 3626]
gi|170715557|gb|EDT27739.1| RNA methyltransferase, RsmE family [Clostridium perfringens CPE
str. F4969]
Length = 250
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 105/222 (47%), Gaps = 12/222 (5%)
Query: 55 RVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHT 114
++ G++ H+ KVLR+ ++V + N + G ++ +++ + + LE KL + +
Sbjct: 17 KITGEDVKHIYKVLRVKPGEKVVVNNLESEEFLGEVEEVNKQEVSIKILE--KLDVNNES 74
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
N+ G K + D +V+KC ELG + P +T+ + + G+ L I
Sbjct: 75 NLNITLFQGMPKAAKMDLIVQKCVELGVSEIIPTITD-RVDVKLKGEFKKLD---RLNKI 130
Query: 175 ANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT-----PLVTALSSSRN 229
A A + + VL PM G+L + + L + AT +V ++ + +
Sbjct: 131 ALEACKQSKRTVIPEVLE-PMDFKGVLEKIDELDLMVIPYENATGYGIRAMVNSIENKDS 189
Query: 230 ESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA 271
+ I+VGPEG F E E+ + E GA V LGP LR ETA
Sbjct: 190 IKNVGIMVGPEGGFEESEIEALKEKGAHIVTLGPRILRTETA 231
>gi|417304668|ref|ZP_12091678.1| Ribosomal RNA small subunit methyltransferase E [Rhodopirellula
baltica WH47]
gi|327539023|gb|EGF25657.1| Ribosomal RNA small subunit methyltransferase E [Rhodopirellula
baltica WH47]
Length = 280
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 126/284 (44%), Gaps = 57/284 (20%)
Query: 44 IPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEG---------CIQRID 94
+P +Q +V++ +E H ++V+R+ T DR+ELF+G G + C+ R D
Sbjct: 7 VPDLQTQAPVVQLPDEEASHASRVMRVQTGDRIELFDGCGHQADAEVVSVSKRECVVRCD 66
Query: 95 RTGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE--- 151
+ED+ + V A G K RA ++E+ TELG V P++ E
Sbjct: 67 -------PIEDVD----REPSIAVDLAIGLPKPDRAKEMIERLTELGVARVFPIVFERTQ 115
Query: 152 -------------LHLQS-RKIGDNGFLSCNFYYGFI-------ANSAF---------VY 181
+ ++S ++ G N ++ F+ A+SA +
Sbjct: 116 RPPKENFLDKLRRIVIESCKQSGRNVLMTIESPIDFVSFTETLAASSATNDEEDPQPRQW 175
Query: 182 GGQR-LHEMVLNPPMKIDGLLPL-VSQSKLAFVAI--AEATPLVTALSSSRNESSGLIIV 237
QR L M +PP+ + P V Q+ A + ++A + T S + L ++
Sbjct: 176 SWQRVLVAMPDSPPLSATDVEPTGVRQTGAAQTGVGQSDARQINTGQSGLNDRPRTLALI 235
Query: 238 GPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
GPEG +E E + V+ GA ++GLG LR+ETA + A L++
Sbjct: 236 GPEGGLSEAEHQRCVDVGAESIGLGRRILRIETAAAIVAARLVV 279
>gi|423221867|ref|ZP_17208337.1| RsmE family RNA methyltransferase [Bacteroides cellulosilyticus
CL02T12C19]
gi|392645285|gb|EIY39014.1| RsmE family RNA methyltransferase [Bacteroides cellulosilyticus
CL02T12C19]
Length = 232
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 96/236 (40%), Gaps = 37/236 (15%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWN- 117
+E H +VLRL+ D++ L +GKG I V LE + Q WN
Sbjct: 18 EEAQHCVRVLRLNIGDQITLTDGKGNFYRAEISAATNKRCMVNILE----TIYQEPLWNG 73
Query: 118 --VFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
A T R +W EK TE+G +T FL+C F +
Sbjct: 74 HLHIAMAPTKNMDRTEWFAEKATEIGFDELT-----------------FLNCRFSERKVI 116
Query: 176 NSAFVYG------GQRLHEMV--LNPPMKIDGLL--PLVSQSKLAFVAIAEATPLVTALS 225
+ + Q L + LN + + P Q +A E PL+ +
Sbjct: 117 KTERISKILVSAIKQSLKARLPQLNEMTDFNKFITQPFKGQKFIAHCYEGEK-PLLKDVF 175
Query: 226 SSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
R L+++GPEGDF+EKEV K +E G T + LG RLR ETA + TL L
Sbjct: 176 --RKGEDALVLIGPEGDFSEKEVQKAIENGFTPISLGKSRLRTETAALVACHTLNL 229
>gi|416019180|ref|ZP_11566073.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
glycinea str. B076]
gi|416023972|ref|ZP_11568151.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
glycinea str. race 4]
gi|422402675|ref|ZP_16479735.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
glycinea str. race 4]
gi|320322008|gb|EFW78104.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
glycinea str. B076]
gi|320330886|gb|EFW86860.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330872110|gb|EGH06259.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 239
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 114/238 (47%), Gaps = 14/238 (5%)
Query: 44 IPRFFSQGGIVRVEGD----EFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
+ RFF++ + E + + ++++VLR++ D ++LF+G G G + + + +
Sbjct: 3 LSRFFTEAPLSLGEHELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKRVH 62
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
V E + + + G +G R DW ++K TELG +TP+++E ++
Sbjct: 63 VQLTESFAGQV--ESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSER--CEVRL 118
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
D ++ IA SA G+ + V++ PM + + +++ L V P
Sbjct: 119 KDERAEKRQAHWQQIAISACEQCGRSV-VPVIHAPMPLAEWIKH-TEADLKLVL----HP 172
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
+ L+S +S ++GPEG + EV++ +AG A LGP LR ETA + L+
Sbjct: 173 VAEPLTSHDKPASLAFLIGPEGGLNDAEVDQAQDAGFHAARLGPRVLRTETAPVVALS 230
>gi|120436000|ref|YP_861686.1| 16S ribosomal RNA methyltransferase RsmE [Gramella forsetii KT0803]
gi|117578150|emb|CAL66619.1| protein containing DUF558 [Gramella forsetii KT0803]
Length = 237
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 112/237 (47%), Gaps = 29/237 (12%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRID--RTGLDVVALEDLKLVLPQHTQW 116
DE H+ KVLR S D + + NG G LI I + D + V+++E K P +
Sbjct: 21 DESKHIVKVLRKSEGDILNITNGNGLLINAEIIKADIKQCLAKVISVE--KQPAPPYYVH 78
Query: 117 NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIAN 176
+ A T R +W +EK E+G +TP++ + H + + + N F +
Sbjct: 79 MIVAP--TKMNDRYEWFLEKAMEIGVHEITPIICD-HSERKVVKLNRFER-------VLQ 128
Query: 177 SAFVYGGQRLHEMV--LNPPMKI-DGLLPLVSQSKLAFVAIAEATPLVTALSSSRNE--- 230
SA Q LH + LN P+ D + + SK ++A E T + +NE
Sbjct: 129 SAM---KQSLHYRMPKLNDPINFSDFIATEIEGSK--YIAHCEEE---TGKNYLQNEIIP 180
Query: 231 -SSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSDSQ 286
+ I++GPEGDF+++E+ K + G AV LG RLR ETA I ++ L + +
Sbjct: 181 GENINILIGPEGDFSKEEIEKAINKGWNAVSLGDSRLRTETAAIVACHSVALINQKK 237
>gi|226942481|ref|YP_002797554.1| 16S ribosomal RNA methyltransferase RsmE [Azotobacter vinelandii
DJ]
gi|226717408|gb|ACO76579.1| conserved hypothetical protein [Azotobacter vinelandii DJ]
Length = 239
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 109/239 (45%), Gaps = 18/239 (7%)
Query: 46 RFFSQG----GIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVV 101
RFF G++ + + ++ +VLRL+ D V+LF+G G G + + + + V
Sbjct: 5 RFFIDAPLALGLLDLPEAQAHYIGRVLRLAPGDAVQLFDGSGREFRGELVEVGKKSVRV- 63
Query: 102 ALEDLKLVLP--QHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
+L+ LP + + G +G R DW ++K TELG +TPLL+E ++
Sbjct: 64 ---ELREQLPGLAESPLRIHLGQGLSRGERMDWAIQKATELGVAEITPLLSERC--EVRL 118
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
D ++ IA SA G+ + + P D L + ++ KL P
Sbjct: 119 KDERADKRLAHWQQIAISACEQCGRSVLPTIHPPAPLEDWLKGIEAELKLVL------HP 172
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
L+S +S ++GPEG +E EV+ AG A LGP LR ETA + L+
Sbjct: 173 FAEPLASHARPASLAFLIGPEGGLSETEVDAARRAGYRAARLGPRVLRTETAPVVALSV 231
>gi|71737741|ref|YP_272747.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71558294|gb|AAZ37505.1| uncharacterized conserved protein [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 239
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 114/238 (47%), Gaps = 14/238 (5%)
Query: 44 IPRFFSQGGIVRVEGD----EFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
+ RFF++ + E + + ++++VLR++ D ++LF+G G G + + + +
Sbjct: 3 LSRFFTEAPLSLGEHELPEAQTHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKRVH 62
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
V E + + + G +G R DW ++K TELG +TP+++E ++
Sbjct: 63 VQLTESFAGQV--ESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSER--CEVRL 118
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
D ++ IA SA G+ + V++ PM + + +++ L V P
Sbjct: 119 KDERAEKRQAHWQQIAISACEQCGRSV-VPVIHAPMPLAEWIKH-TEADLKLVL----HP 172
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
+ L+S +S ++GPEG + EV++ +AG A LGP LR ETA + L+
Sbjct: 173 VAEPLTSHDKPASLAFLIGPEGGLNDAEVDQAQDAGFHAARLGPRVLRTETAPVVALS 230
>gi|390944990|ref|YP_006408751.1| RsmE family RNA methyltransferase [Belliella baltica DSM 15883]
gi|390418418|gb|AFL85996.1| RNA methyltransferase, RsmE family [Belliella baltica DSM 15883]
Length = 238
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 108/245 (44%), Gaps = 34/245 (13%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQ 115
++ +E H+ KVLR + DRV+ NGKG L I +D + + LP+
Sbjct: 16 LDSEESKHLIKVLRKTQGDRVKFTNGKGCLFHCVI--LDSNPKSAKIKIEEREFLPEDDY 73
Query: 116 WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTEL----HLQSRKIGDNGFLSCNFYY 171
+ A T R +W+VEK TE+G +T + ++ HL+ ++ +C
Sbjct: 74 YIHLAISPTKNSERMEWMVEKLTEIGVHEITFMESKYSERSHLKLERLEKKIIAACK--- 130
Query: 172 GFIANSAFVYGGQRLHEMV--LNP--PMKIDGLLPLVSQSKL----AFVAIAEATPLVTA 223
Q L V LNP PM LV SK F+A +
Sbjct: 131 ------------QSLKTRVPKLNPVRPMN-----ELVQDSKFNTYQRFIAYVDKENDRHL 173
Query: 224 LSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCS 283
+ +++ LI++GPEGDF+++E+ LG RLR ETA +A + T+ L +
Sbjct: 174 FDKVKPDNAYLILIGPEGDFSQQELQLAFGNHFLPCSLGKSRLRSETAGVAAVHTIQLKN 233
Query: 284 DSQQM 288
+ +++
Sbjct: 234 NLKEL 238
>gi|339489710|ref|YP_004704238.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida S16]
gi|338840553|gb|AEJ15358.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida S16]
Length = 239
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 111/239 (46%), Gaps = 14/239 (5%)
Query: 44 IPRFFSQGGIVRVEGD----EFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
+ RFF + E D + ++ +VLR++ D V+LF+G G G + + + +
Sbjct: 3 LSRFFIDAPLSLGEHDLPEAQAHYIGRVLRMAPGDAVQLFDGSGQEYRGQLLEVGKKTVR 62
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
V D L + +V G +G R DW ++K TELGA +TP+++E ++
Sbjct: 63 VSL--DQALAGQADSPLHVHLGQGLSRGERMDWAIQKATELGANEITPIVSER--CEVRL 118
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
D ++ +A SA G R V++PP+ + L + + L V P
Sbjct: 119 KDERADKRLAHWRQVAISACEQCG-RSTLPVIHPPVTLAEWLN-SANADLKLVL----HP 172
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
+ L+S ++ ++GPEG +E EV + AG A LGP LR ETA + L+
Sbjct: 173 VAEPLTSHAKPATLAFLIGPEGGLSEAEVEQAKAAGFHAARLGPRVLRTETAPVVALSV 231
>gi|85819194|gb|EAQ40353.1| conserved hypothetical protein [Dokdonia donghaensis MED134]
Length = 233
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 100/225 (44%), Gaps = 33/225 (14%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHT---- 114
DE H+ +VLR D + L NG G L + + KL + HT
Sbjct: 21 DESKHVIRVLRKQPGDTIYLTNGNGYLFTAQVYDANPNKC--------KLSITSHTYQEP 72
Query: 115 -QWNVFAAFGTLK-GGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYG 172
+ + A K R +W +EK TE+G +TPLL + H + + I + FL
Sbjct: 73 RDYKLHLAVAPTKLNDRFEWFLEKATEIGVTEITPLLCD-HSERKVIKEERFLK------ 125
Query: 173 FIANSAFVYGGQRLHEMV--LNP--PMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSR 228
I SA Q LH + LNP P K D + S + +A + L + LS +
Sbjct: 126 -ILQSAM---KQSLHYHLPKLNPLTPFK-DFITNAHSNTFIAHCEDDTKSLLKSELSPA- 179
Query: 229 NESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
+ I++GPEGDF+ E+ + ++ T V LG RLR ETA I
Sbjct: 180 --TDCTILIGPEGDFSTTEIQQALQKNITPVSLGHSRLRTETAAI 222
>gi|20807439|ref|NP_622610.1| 16S ribosomal RNA methyltransferase RsmE [Thermoanaerobacter
tengcongensis MB4]
gi|20515963|gb|AAM24214.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis
MB4]
Length = 245
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 107/235 (45%), Gaps = 12/235 (5%)
Query: 50 QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD--VVALEDLK 107
+G V+G +F H+ VLR D++ + + + E + RI++ D ++ LE+ K
Sbjct: 12 KGKFAYVDGKDFHHLIHVLRYKVGDKIVVSD----MAEEHLGRIEKIEKDRAILFLEE-K 66
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
+ + VF G LK + D +V+KCTE+G + + P ++E + I
Sbjct: 67 MEGNAESPLEVFLFQGILKADKMDLIVQKCTEIGVKRIIPFVSEFSVVD--IKRANIDKK 124
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFV--AIAEATPLVTALS 225
+ I+ A G+ + + + P+ + + LA + E L L
Sbjct: 125 VERWKKISEEACKQSGRNIIPEI-SAPVSFKEAIEKAMECDLAIIPYEKEEKKRLKEVLK 183
Query: 226 SSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
+ I +GPEG F++KE+ K + G V LGP LR ETA IA+ A +M
Sbjct: 184 DVEDAKKIGIFIGPEGGFSQKEIEKAINNGIVPVTLGPRILRAETAAIAVSAIVM 238
>gi|82701513|ref|YP_411079.1| 16S ribosomal RNA methyltransferase RsmE [Nitrosospira multiformis
ATCC 25196]
gi|82409578|gb|ABB73687.1| conserved hypothetical protein [Nitrosospira multiformis ATCC
25196]
Length = 255
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 110/251 (43%), Gaps = 20/251 (7%)
Query: 44 IPRFFS-----QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRF+ G + + H +VLRL D V LFNG GG I R + G+
Sbjct: 3 LPRFYCPIEILAGQTLELPSAVAHHAARVLRLEAGDEVVLFNGDGGEFTCVILRASKQGV 62
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
DVV ++ + + + + A G + DW+V+K ELG + PL+T+ + R
Sbjct: 63 DVVVERHVQ--VERESPLTILLAQAVCMGEKMDWIVQKAVELGVTRIQPLITKQSV-VRL 119
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSK---------- 208
G+ G + + ++ G + E++ P + L ++++
Sbjct: 120 GGERGEKRVSHLQKVVISACEQCGRNHVPEVL--PLATLRNWLGRQTEARRMSSDSLSPD 177
Query: 209 LAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRV 268
F+ AT + S N S +++VGPEG FT+ E + AG + LG LR
Sbjct: 178 ACFMLSPFATKGLRDFKHSSNIGSIILLVGPEGGFTQDEEAAAMVAGFIPLRLGHRILRT 237
Query: 269 ETATIALLATL 279
E+A +A + +
Sbjct: 238 ESAALAAVGAM 248
>gi|402490180|ref|ZP_10836969.1| 16S ribosomal RNA methyltransferase RsmE [Rhizobium sp. CCGE 510]
gi|401810206|gb|EJT02579.1| 16S ribosomal RNA methyltransferase RsmE [Rhizobium sp. CCGE 510]
Length = 245
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 104/221 (47%), Gaps = 12/221 (5%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
S GG + D+F ++ VLR+ V LFNG+ G + + R + + A+E+ +
Sbjct: 16 LSSGGALEANADQFNYLANVLRMEEGQEVLLFNGRDGEWKATLTFPTRKRIQLTAIEETR 75
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
PQ ++ F LK GR D+LV+K E+GA + P++T+ H+Q KI + L
Sbjct: 76 ---PQPAPCDLHYLFAPLKVGRLDYLVQKAVEMGAGLLQPVMTQ-HVQG-KITNLDKLRA 130
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSS 227
N A V G + E P +D L + ++ + +A + S+
Sbjct: 131 NVVEA--AEQCGVLGIPDVAE----PVRLLDLLDRWPRERRIIYCDEGDAGQNPLPVLSA 184
Query: 228 RNESSGLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLR 267
E ++VGPEG F+E+E ++ TA+ LGP LR
Sbjct: 185 IKERHLALLVGPEGGFSEEERTRLRSLDFVTAIPLGPRILR 225
>gi|414153656|ref|ZP_11409978.1| conserved hypothetical protein [Desulfotomaculum hydrothermale Lam5
= DSM 18033]
gi|411454677|emb|CCO07882.1| conserved hypothetical protein [Desulfotomaculum hydrothermale Lam5
= DSM 18033]
Length = 246
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 104/251 (41%), Gaps = 23/251 (9%)
Query: 40 SRGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
SR +P G R+ G + H+++VLRL+T D + L +G G + + I I + +
Sbjct: 2 SRFFVPPEQITGNTARITGPDVKHISRVLRLTTGDNLTLLDGAGSVYQAVISEIHKE--E 59
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
++ + + V G KG + + +++KCTELG + PL H K+
Sbjct: 60 ILCMLLAQEAAAAEAALRVTLVQGLPKGDKMETIIQKCTELGVYRIIPLAA--HRSVVKL 117
Query: 160 GDNGFLSCNFYYGFIANSAF----------VYGGQRLHEMVLNPPMKIDGLLPLVSQSKL 209
D + +A A V +R HE++ P + LLP + +
Sbjct: 118 DDKKAAERQERWQRVAVEAAKQCRRTCVPEVQKLRRWHEVLAALPDRALVLLPWEEEKQQ 177
Query: 210 AFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVE 269
+ + + P S + +GPEG FT E ++ G V LG LR E
Sbjct: 178 SLKQVLQMVP---------TPSEVYLFIGPEGGFTPAEAAQVSRPGCYRVTLGSRILRTE 228
Query: 270 TATIALLATLM 280
TA A L ++
Sbjct: 229 TAGPAALTMVL 239
>gi|359797954|ref|ZP_09300533.1| 16S ribosomal RNA methyltransferase RsmE [Achromobacter
arsenitoxydans SY8]
gi|359364144|gb|EHK65862.1| 16S ribosomal RNA methyltransferase RsmE [Achromobacter
arsenitoxydans SY8]
Length = 243
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 108/245 (44%), Gaps = 21/245 (8%)
Query: 45 PRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PRF+ S G + + H +VLRL + + LFNG GG ++ + G
Sbjct: 4 PRFYCDVPLSAGARIALPDALAHHALRVLRLRAGETIVLFNGLGGEYPAVLEIDGKAGF- 62
Query: 100 VVALEDLKLVLPQHTQW--NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHL 154
L D P+ + + A G G + DW+VEK ELGA V+P+ + L L
Sbjct: 63 -AQLGDFD---PREAELAGRITVAQGLPSGDKMDWVVEKAVELGAAHVSPIAAQRSVLQL 118
Query: 155 QSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI 214
++ ++ IA SA G R M ++ P + L +
Sbjct: 119 SGPRLEKR-----VAHWQRIAQSAAEQCG-RNRLMTVDAPQTLADWLAQPADGLRLLCHP 172
Query: 215 AEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274
A L L + + + ++VGPEG +++KE+ + +AG AV GP LR ETA +A
Sbjct: 173 EAAEDLAGRLRAMPDARALTLLVGPEGGWSDKELEQARQAGVQAVRFGPRVLRTETAGLA 232
Query: 275 LLATL 279
LL+ +
Sbjct: 233 LLSAV 237
>gi|359782714|ref|ZP_09285934.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas
psychrotolerans L19]
gi|359369534|gb|EHK70105.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas
psychrotolerans L19]
Length = 242
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 97/215 (45%), Gaps = 10/215 (4%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +VLRL+ D V+LF+G G G + + + L V E+L + +
Sbjct: 26 YLGRVLRLAPGDAVQLFDGSGREYLGQVAEVGKKTLSVELTEELPGQ--PDSPLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TPL++E ++ D ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVAEITPLVSERC--EVRLKDERADKRLQHWRQVAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G+ ++ P + D L + KL +AE L S + +++GPEG
Sbjct: 142 GRSTVPLIHPPQLLADWQAGLDADLKLVLHPVAEP------LESHARPTRLALLIGPEGG 195
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
+E EV AG LGP LR ETA + L+
Sbjct: 196 LSEAEVTAARAAGFQPARLGPRVLRTETAPVVALS 230
>gi|395219601|ref|ZP_10402502.1| 16S ribosomal RNA methyltransferase RsmE [Pontibacter sp. BAB1700]
gi|394453894|gb|EJF08688.1| 16S ribosomal RNA methyltransferase RsmE [Pontibacter sp. BAB1700]
Length = 238
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 100/240 (41%), Gaps = 39/240 (16%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQ--RIDRTGLDVVALEDLKLVLPQHTQW 116
DE H T+VLRL D V L +G+GG+ IQ R L ++ D +L + +
Sbjct: 19 DESKHCTRVLRLHQGDTVYLVDGRGGMYTAIIQDAHQKRCQLQII---DKQLEYGKLPYY 75
Query: 117 NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIAN 176
A T R +W VEK E+G ++T L E H + +++ + IA
Sbjct: 76 VHIAVAPTKNMDRIEWFVEKAVEIGVSAITFLECE-HSERKQLRLDRIEK-------IAV 127
Query: 177 SAFVYGGQRLHEMVLNPPMKIDGLLPLVSQ------------SKLAFVAIAEATPLVTAL 224
SA + G LPL+++ + F+A E +
Sbjct: 128 SAMKQSQK--------------GYLPLLNELTPYQHFIKSCIPEDTFIAHLEDDATKSIR 173
Query: 225 SSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSD 284
R + I++GPEGDF+ KE+ + G V LG RLR ETA + TL + D
Sbjct: 174 DYYRPDRQHCILIGPEGDFSPKEIKAAYDLGIRPVTLGQSRLRTETAALVACHTLHVLHD 233
>gi|160931277|ref|ZP_02078678.1| hypothetical protein CLOLEP_00114 [Clostridium leptum DSM 753]
gi|156869755|gb|EDO63127.1| RNA methyltransferase, RsmE family [Clostridium leptum DSM 753]
Length = 242
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 108/245 (44%), Gaps = 13/245 (5%)
Query: 44 IPRFFSQ---GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRI--DRTGL 98
+PRFF + GG V + G + HM + LR+ D V L + +G + +QR+ + L
Sbjct: 1 MPRFFVESVSGGQVILTGPDAAHMCRSLRMKPGDTVTLCDTQGFDYQCVVQRLSPEEAAL 60
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
++ + +V G KG + DW+V+K ELG + P+ E + SR
Sbjct: 61 TIIDKHQCE----NEPSLSVILYQGLPKGEKMDWIVQKAVELGVSQIVPVRMERCV-SRP 115
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT 218
G + + +A G L ++ PP L +Q+++
Sbjct: 116 DGKASQKKTDRWQKIAVEAAKQCGRGILPQVC--PPADFHQALIQAAQAEVFLFCYEGGG 173
Query: 219 PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
V+ L + + ++ ++I GPEG F+ E +AG V LG LR ETA +A L+
Sbjct: 174 ESVSRLITQKTKTVSVLI-GPEGGFSLPEAEAARKAGGVPVTLGKRILRTETAPLAALSV 232
Query: 279 LMLCS 283
+M S
Sbjct: 233 IMYAS 237
>gi|367472999|ref|ZP_09472569.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 285]
gi|365274683|emb|CCD85037.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 285]
Length = 249
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 118/241 (48%), Gaps = 22/241 (9%)
Query: 45 PRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PR + +GG V +E ++ ++ VLRL D V +FNG+ G + I R D
Sbjct: 9 PRLYVDAPLKEGGAVALERNQSNYLGNVLRLGAGDSVLVFNGRDGEWQAAIA--GRKRPD 66
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
++A++ + + PQ ++ F LK R D++V+K E+GA + P+LT H Q ++
Sbjct: 67 LLAIQ--QRIRPQDRLPDIAYVFAPLKHARLDYVVQKAVEMGAARLEPILTR-HTQVARV 123
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
NG + +A G L E+ P+ ++ L + ++L V EA
Sbjct: 124 --NG----ERMRANVIEAAEQCGILSLAEV--RDPVPLERFLRERAATRL-LVFCDEAAD 174
Query: 220 LVTALSSSRNESSGLI--IVGPEGDFTEKEVNKIV-EAGATAVGLGPHRLRVETATIALL 276
+ + + R+E+ G I ++GPEG F +E ++ + + LGP LR +TA +A L
Sbjct: 175 VAAPVQALRDEAPGGIDVLIGPEGGFAAEERELLLRQPRVIRLALGPRILRADTAGVAAL 234
Query: 277 A 277
A
Sbjct: 235 A 235
>gi|317125267|ref|YP_004099379.1| hypothetical protein Intca_2142 [Intrasporangium calvum DSM 43043]
gi|315589355|gb|ADU48652.1| protein of unknown function DUF558 [Intrasporangium calvum DSM
43043]
Length = 247
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 108/233 (46%), Gaps = 7/233 (3%)
Query: 51 GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVL 110
G ++ ++GDE H V+RL +R + +G G + +DRT + LE +
Sbjct: 19 GSVIVLDGDEGRHAATVVRLRPGERYYVADGVGRRALAEAETVDRTSVRGRVLEVVDEAE 78
Query: 111 PQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFY 170
P T++ + A KG R + +E TELG V P E + + G+ S +
Sbjct: 79 PA-TRFVLVQALA--KGDRDEQAIEAATELGVDEVVPWAAERSIVVWR-GERAAKSLAKW 134
Query: 171 YGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNE 230
+ +A +R + + P+ + L+ V + L V EAT + A++ + +
Sbjct: 135 MTVVTRAA--KQSRRARIPLTSSPVDLAALIDRVRGAALTLVLHEEATEPLAAVAVAES- 191
Query: 231 SSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCS 283
L++VGPEG + +E+ +V AGA V LGP LR TA A LA L S
Sbjct: 192 GDVLVVVGPEGGISGRELEALVAAGARPVRLGPTTLRSSTAGPAALAVLNAAS 244
>gi|95928478|ref|ZP_01311225.1| protein of unknown function DUF558 [Desulfuromonas acetoxidans DSM
684]
gi|95135268|gb|EAT16920.1| protein of unknown function DUF558 [Desulfuromonas acetoxidans DSM
684]
Length = 261
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 107/249 (42%), Gaps = 12/249 (4%)
Query: 36 YANQSRGGIPRFFS-----QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCI 90
Y+ +R + RFF+ + D H++ VLRL T+DR+ L +G+GG E
Sbjct: 2 YSVSTRSLMRRFFTPQITFTHSSADLPRDVAHHISTVLRLRTDDRIVLCDGRGGCAEC-- 59
Query: 91 QRIDRTGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLT 150
RID + L+ L Q T V G + D +++K TELG Q V P+
Sbjct: 60 -RIDEISPKRCRVTRLRHWLEQETALPVTLIQGLPHSDKLDLILQKTTELGVQQVRPVRC 118
Query: 151 ELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLA 210
+ Q + + +A L E+ + + L + KL
Sbjct: 119 Q-RCQYPIAPAKAARKLERWQKIVTEAARQSERSWLPEVAALCSFE-EALQHCDADVKLV 176
Query: 211 FVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
A+ PL L + ++VGPEG ++EV VE G AVGLGP LR ET
Sbjct: 177 LWEQAD-QPLQRVLPEISPDRVA-VVVGPEGGLAQEEVALAVEHGFVAVGLGPRILRTET 234
Query: 271 ATIALLATL 279
A +AL+A L
Sbjct: 235 AGMALMAIL 243
>gi|374622126|ref|ZP_09694653.1| hypothetical protein ECTPHS_03844 [Ectothiorhodospira sp. PHS-1]
gi|373941254|gb|EHQ51799.1| hypothetical protein ECTPHS_03844 [Ectothiorhodospira sp. PHS-1]
Length = 251
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 103/231 (44%), Gaps = 29/231 (12%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTG----LDVVALEDLKLVLPQHTQWNV 118
H+ +VLRL T + LFNG G + + +R ++ D + LP V
Sbjct: 27 HVVQVLRLRTGAPLILFNGDGAEYTATLIQAERRASAARIEARVPRDTRPALP------V 80
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCN----FYYGFI 174
A G KG R D+ ++K TELG + P++T R +G + + + G +
Sbjct: 81 TLAQGIAKGDRMDYGLQKATELGVSRIQPVITR-----RTVGGDDERRLDKRMTHWRGVV 135
Query: 175 ANSAFVYGGQRLHEMVLNPPMKIDGLL------PLVSQSKLAFVAIAEATPLVTALSSSR 228
++ G + E++ PPM + L P + L V AT +T +
Sbjct: 136 ISACEQCGRNDIPELL--PPMPLTRWLGAYRSGPGAEEQALGLVLDPRATHGLTGIRD-- 191
Query: 229 NESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
+S +++GPEG E E+ + + G T V LGP LR ETA +A LA +
Sbjct: 192 RPASIHLLIGPEGGLEENEIGQAIHEGMTPVRLGPRILRTETAGVAALAVI 242
>gi|371776912|ref|ZP_09483234.1| ribosomal RNA small subunit methyltransferase e [Anaerophaga sp.
HS1]
Length = 240
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 102/248 (41%), Gaps = 31/248 (12%)
Query: 45 PRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKG-----GLIEGCIQRIDRTGLD 99
P + GI+ E E H KVLR D +++ G+G +IE ++R L
Sbjct: 7 PDILNNSGILNEE--ESRHCVKVLRHKEGDLIKVITGQGECYTCTIIEASVKR---CRLK 61
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
+ + E K + + A T R +W +EK TELG +TP+L H RK
Sbjct: 62 IESRESAK----KSSTVCHIAIAPTKSIDRFEWFIEKSTELGIDKITPILC--HQSERK- 114
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQ--RLHEMVLNPPMKIDGLLPLVSQSKLAFVAIA-- 215
+ Q R + + + L KL F+A
Sbjct: 115 --------QIRLSRLEKVIISATKQSLRFWKPSITELTNLKDFLLANHPEKLKFIAYCDE 166
Query: 216 --EATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
E PL L S LI++GPEGDFTE+EV ++ G + LG +RLR ETA I
Sbjct: 167 KVERQPLSAQLLDRDKTQSVLILIGPEGDFTEEEVTIAIDQGFIPISLGRNRLRTETAGI 226
Query: 274 ALLATLML 281
+ T+ L
Sbjct: 227 SACMTVRL 234
>gi|168215653|ref|ZP_02641278.1| RNA methyltransferase, RsmE family [Clostridium perfringens NCTC
8239]
gi|182382065|gb|EDT79544.1| RNA methyltransferase, RsmE family [Clostridium perfringens NCTC
8239]
Length = 250
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 105/223 (47%), Gaps = 12/223 (5%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQH 113
V++ G++ H+ KVLR+ ++V + N + G ++ +++ + + LE KL +
Sbjct: 16 VKITGEDVKHIYKVLRVKPGEKVVVNNLESEEFLGEVEEVNKQEVSIKILE--KLDVNNE 73
Query: 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGF 173
+ N+ G K + D +V+KC ELG + P +T+ + + G+ L
Sbjct: 74 SNLNITLFQGMPKAAKMDLIVQKCVELGVSEIIPTITD-RVDVKLKGEFKKLD---RLNK 129
Query: 174 IANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT-----PLVTALSSSR 228
IA A + + VL P M +L + + L + AT +V ++ +
Sbjct: 130 IALEACKQSKRTVIPQVLEP-MDFKEVLEKIDELDLMVIPYENATGYGIRAMVNSIENKD 188
Query: 229 NESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA 271
+ + I+VGPEG F E E+ + E GA V LGP LR ETA
Sbjct: 189 SIKNVGIMVGPEGGFEESEIEALKEKGAHIVTLGPRILRTETA 231
>gi|350553533|ref|ZP_08922704.1| Ribosomal RNA small subunit methyltransferase E [Thiorhodospira
sibirica ATCC 700588]
gi|349790354|gb|EGZ44268.1| Ribosomal RNA small subunit methyltransferase E [Thiorhodospira
sibirica ATCC 700588]
Length = 246
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 113/247 (45%), Gaps = 23/247 (9%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
IPR + G I+ + H +VLRL + +FNG+GG + + R
Sbjct: 3 IPRLYLDCALQVGEILTLPEMAHRHAVQVLRLKPGAELCVFNGQGGQYNAHLLEVTRRQS 62
Query: 99 DVVALEDLKL-VLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
V L L LP+ + A G KG R D+ ++K ELG +V PL T+ +Q
Sbjct: 63 QVRILGFTPLDTLPR---LPITLAQGIAKGERMDYALQKAVELGVSAVQPLFTQRTVQ-- 117
Query: 158 KIGDNGFLSCNFYY--GFIANSAFVYGGQRLHEMVLNPPMKIDGLL---PLVSQSKLAFV 212
+ D L+ ++ G I ++ G R+ L PP ++D L PL + L V
Sbjct: 118 -LDDPKRLNNRLHHWRGVIISACEQCG--RVELPTLYPPQRLDQWLDAAPLAN--DLGIV 172
Query: 213 AIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
+A + L+ + N + +++GPEG E+E+ G AV LGP LR ETA
Sbjct: 173 LSPQAEHSLAQLAYTPNAVT--VLIGPEGGLEERELRHAQAKGFHAVRLGPRILRTETAA 230
Query: 273 IALLATL 279
+A L+ +
Sbjct: 231 LAALSLI 237
>gi|344343807|ref|ZP_08774674.1| Ribosomal RNA small subunit methyltransferase E [Marichromatium
purpuratum 984]
gi|343804791|gb|EGV22690.1| Ribosomal RNA small subunit methyltransferase E [Marichromatium
purpuratum 984]
Length = 243
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 99/217 (45%), Gaps = 9/217 (4%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
H+ +VLRL V LF+G G I R G+ V L L P + + A
Sbjct: 27 HLAQVLRLGPGAEVVLFDGSGHDFPATIAHSGRDGV-AVRLGAPGLAEPA-PRLEIHLAL 84
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G KG R D+ ++K ELG +TPL TE + R G + + G I ++ G
Sbjct: 85 GVSKGERMDFALQKAVELGVTRITPLRTERSV-VRLDGARLARRLDHWRGVIVSACEQSG 143
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
+RL L+ + LP L AE +T L+ E+ +++GPEG
Sbjct: 144 RRRLPR--LDDLQALPDWLPAGWPGGLILDPRAERA--LTTLTPP--ETGVTLLIGPEGG 197
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
+E+E+N+ G T V LGP LR ETA +A +A +
Sbjct: 198 LSEREINQARAQGFTGVRLGPRVLRTETAPLAAIALI 234
>gi|388467408|ref|ZP_10141618.1| 16S rRNA methyltransferase, RsmE family [Pseudomonas synxantha
BG33R]
gi|388010988|gb|EIK72175.1| 16S rRNA methyltransferase, RsmE family [Pseudomonas synxantha
BG33R]
Length = 239
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 102/218 (46%), Gaps = 16/218 (7%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR+ D V+LF+G G G + + + + V + ++
Sbjct: 26 YISRVLRMGEGDAVQLFDGSGQEFSGTLLEVGKKRVTVQLTR--SFAGQDESPLHIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G +G R DW ++K TELG ++TP+ +E + L+ + D L ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVNAITPIFSERCEVRLKDER-ADKRLL----HWRQVAISAC 138
Query: 180 VYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGP 239
G+ ++ P + D L + KL +AE P++ S SS ++GP
Sbjct: 139 EQCGRSTVPVIHAPVLLADWLKQTEADLKLVLHPVAE--PMI----SHAKPSSLAFLIGP 192
Query: 240 EGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
EG T+ EV+ AG A LGP LR ETA + L+
Sbjct: 193 EGGLTDGEVDTAQGAGFHAARLGPRVLRTETAPVVALS 230
>gi|422657391|ref|ZP_16719832.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
lachrymans str. M302278]
gi|331015976|gb|EGH96032.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
lachrymans str. M302278]
Length = 275
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 10/207 (4%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR++ D ++LF+G G G + + + + V E + + +
Sbjct: 26 YISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKRVRVQLTE--RFAGQVESGLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TP+++E ++ D ++ IA SA
Sbjct: 84 GLSRGERMDWAIQKATELGVSEITPIVSER--CEVRLKDERAEKRQAHWQQIAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G+ + V++PPM + + L +++ L V P+ L+S +S ++GPEG
Sbjct: 142 GRSV-VPVIHPPMPLADWIKL-TEADLKLVL----HPVAEPLTSHAKPASLAFLIGPEGG 195
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVE 269
+ EV++ AG A LGP LR E
Sbjct: 196 LNDAEVDQAQNAGFHAARLGPRVLRTE 222
>gi|431925512|ref|YP_007238546.1| 16S rRNA m(3)U1498 methyltransferase [Pseudomonas stutzeri RCH2]
gi|431823799|gb|AGA84916.1| 16S rRNA m(3)U-1498 methyltransferase [Pseudomonas stutzeri RCH2]
Length = 238
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 103/216 (47%), Gaps = 11/216 (5%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +VLRL+ V+LF+G G G + + + + V E LK +P+ + +
Sbjct: 26 YIGRVLRLTAGSAVQLFDGSGDEFRGELLEVGKKTVTVELHEHLK-GMPE-SALQIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TP+++E ++ D ++ IA SA
Sbjct: 84 GLSRGERMDWAIQKATELGVAQITPIISER--CEVRLNDERADKRLAHWRQIAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G+ + +++ P+ + L + ++ KL IAE L+S + ++GPEG
Sbjct: 142 GRSVLP-IIHAPVSLRDWLAVEAELKLVLHPIAEP------LASHAKPRTLAFLIGPEGG 194
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
+E EV + G LGP LR ETA + L+
Sbjct: 195 LSENEVEQAAVQGFLPARLGPRVLRTETAPVVALSV 230
>gi|110803459|ref|YP_699307.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium perfringens
SM101]
gi|110683960|gb|ABG87330.1| RNA methyltransferase, RsmE family [Clostridium perfringens SM101]
Length = 250
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 105/222 (47%), Gaps = 12/222 (5%)
Query: 55 RVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHT 114
++ G++ H+ KVLR+ ++V + N + G ++ +++ + + LE KL + +
Sbjct: 17 KITGEDVKHIYKVLRVKPGEKVVVNNLESEEFLGEVEEVNKQEVSIKILE--KLDVNNES 74
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
N+ G K + D +V+KC ELG + P +T+ + + G+ L I
Sbjct: 75 NLNITLFQGMPKAAKMDLIVQKCVELGVLEIIPTITD-RVDVKLKGEFKKLD---RLNKI 130
Query: 175 ANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT-----PLVTALSSSRN 229
A A + + VL PM G+L + + L + AT +V ++ + +
Sbjct: 131 ALEACKQSKRTVIPEVLE-PMDFKGVLEKIDELDLMVIPYENATGYGIRAMVNSIENKDS 189
Query: 230 ESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA 271
+ I+VGPEG F E E+ + E GA V LGP LR ETA
Sbjct: 190 IKNVGIMVGPEGGFEESEIEALKEKGAHIVTLGPRILRTETA 231
>gi|256821459|ref|YP_003145422.1| hypothetical protein Kkor_0233 [Kangiella koreensis DSM 16069]
gi|256794998|gb|ACV25654.1| protein of unknown function DUF558 [Kangiella koreensis DSM 16069]
Length = 242
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 118/244 (48%), Gaps = 19/244 (7%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PR F+ + + ++ + H+++VLR++T ++ELFNG G IQ I+R +
Sbjct: 3 VPRIFTSEALSLSTEMALDKEASTHISRVLRMNTGQQIELFNGDGFSYFAQIQAIERNQV 62
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQ 155
V +E ++ + + N+ G +G + + ++K ELG + TPL+TE + L
Sbjct: 63 SVRVVEAIE--VNNESPLNIHLFQGISRGDKMELTLQKGVELGVKQFTPLITERCGVKLD 120
Query: 156 SRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIA 215
+++ + I ++ G + L P +K+ L ++ + F+
Sbjct: 121 AKRWQKK----LQHWQKVIESACEQCGRNSIPS--LYPAVKLQDALSQLNNTSF-FMHPD 173
Query: 216 EATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIAL 275
T ++ +++E + VGPEG F+++EV + G V LGP LR ETA +A
Sbjct: 174 SKHSFKTIIADAQSELQ--LWVGPEGGFSDEEVEWVESHGCKPVQLGPRILRTETAALAA 231
Query: 276 LATL 279
++ +
Sbjct: 232 VSVM 235
>gi|194290708|ref|YP_002006615.1| 16S ribosomal RNA methyltransferase rsme [Cupriavidus taiwanensis
LMG 19424]
gi|193224543|emb|CAQ70554.1| conserved hypothetical protein, DUF558 [Cupriavidus taiwanensis LMG
19424]
Length = 253
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 111/253 (43%), Gaps = 27/253 (10%)
Query: 45 PRFFSQGG--IVRVEGD-----EFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRI-DRT 96
PRFF G ++ E D +VLRL+ D + LF+G+GG + + R
Sbjct: 3 PRFFVGGADAVLAAESDFPLPEPVVRHAQVLRLAPGDAITLFDGRGGSHAATLVELGKRH 62
Query: 97 GLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
L + D P + V A G G + DWL+EK ELG ++ PL +
Sbjct: 63 ALARIGAHDAAEAEPP---FRVTLAQGLAGGDKMDWLIEKAVELGVAAIQPLQASRSV-V 118
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSK------LA 210
R G+ + + + + G RL + +D L V+QS L
Sbjct: 119 RLSGERAQKRQSHWQALVQAACEQCGRNRLPAVA--EVTNLDTWLARVAQSGNGGTRLLL 176
Query: 211 FVAIAEATPLVTALSSSRNES---SGL-IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRL 266
A+A P AL + R E+ G+ +++GPEG +E ++AG T V LGP L
Sbjct: 177 SPRAAQALP---ALVAERREALLADGVTLLIGPEGGLAPEEEQAALQAGFTGVSLGPRIL 233
Query: 267 RVETATIALLATL 279
R ETA +A LATL
Sbjct: 234 RTETAGLACLATL 246
>gi|425902085|ref|ZP_18878676.1| 16S rRNA methyltransferase, RsmE family [Pseudomonas chlororaphis
subsp. aureofaciens 30-84]
gi|397881696|gb|EJK98185.1| 16S rRNA methyltransferase, RsmE family [Pseudomonas chlororaphis
subsp. aureofaciens 30-84]
Length = 239
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 101/216 (46%), Gaps = 10/216 (4%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +VLR++ D ++LF+G G G + + + VV D + +
Sbjct: 26 YIGRVLRMAEGDALQLFDGSGNEFRGTLLEVGKK--RVVVRLDENFAGQVESPLQIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TP+ +E ++ D ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVNEITPIFSERC--EVRLKDERADKRLAHWRQVAVSACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G R V++PP+ + + +Q+ L V A PLV S ++ ++GPEG
Sbjct: 142 G-RSRVPVIHPPVLLADWIKQ-TQADLKLVLHPVAEPLV----SHAKPATLAFLIGPEGG 195
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
++ EV++ +AG LGP LR ETA + LA
Sbjct: 196 LSDTEVDQAQDAGFLPARLGPRVLRTETAPVVALAV 231
>gi|315645962|ref|ZP_07899083.1| hypothetical protein PVOR_10924 [Paenibacillus vortex V453]
gi|315278723|gb|EFU42037.1| hypothetical protein PVOR_10924 [Paenibacillus vortex V453]
Length = 256
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 113/261 (43%), Gaps = 55/261 (21%)
Query: 50 QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNG--KGGLIEGCIQRIDRTGLDVVALEDLK 107
+G V + GD+ H+TKV+R D++ + +G + ++E I+ ++ + V +E ++
Sbjct: 12 EGDRVEITGDDARHITKVMRGRLGDKLIVSDGVSREAMVE--IESLEAASVFAVVIESME 69
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHL------------- 154
+ + V A KG + + +++KCTE+GA S P L+E +
Sbjct: 70 M--RNEPRLQVTIAQSLPKGDKMETVIQKCTEIGAVSFAPFLSERTIVQYDAKKEGKRLE 127
Query: 155 QSRKIGDNGFLSC---------------NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDG 199
+ RKI N F + A + ++ H L D
Sbjct: 128 RWRKIAKEAAEQAHRNRVPSVEQPLSWRNLLAAFSSYDAVCFCYEKEHGSQLR-----DV 182
Query: 200 LLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAV 259
L P V Q AL S +++ L++VGPEG FTE+E +AGA +V
Sbjct: 183 LKPFVEQ----------------ALPESGSQACLLLVVGPEGGFTEEECRAAEDAGAVSV 226
Query: 260 GLGPHRLRVETATIALLATLM 280
GLG LR ETA + LA +
Sbjct: 227 GLGRRILRCETAGMTALACAL 247
>gi|389682943|ref|ZP_10174277.1| 16S rRNA methyltransferase, RsmE family [Pseudomonas chlororaphis
O6]
gi|388553150|gb|EIM16409.1| 16S rRNA methyltransferase, RsmE family [Pseudomonas chlororaphis
O6]
Length = 239
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 101/216 (46%), Gaps = 10/216 (4%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +VLR++ D ++LF+G G G + + + VV D + +
Sbjct: 26 YIGRVLRMAEGDALQLFDGSGNEFRGTLLEVGKK--RVVVRLDESFAGQVESPLQIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TP+ +E ++ D ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVNEITPIFSERC--EVRLKDERADKRLAHWRQVAVSACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G R V++PP+ + + +Q+ L V A PLV S ++ ++GPEG
Sbjct: 142 G-RSRVPVIHPPVLLADWIKQ-TQADLKLVLHPVAEPLV----SHAKPATLAFLIGPEGG 195
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
++ EV++ +AG LGP LR ETA + LA
Sbjct: 196 LSDTEVDQAQDAGFLPARLGPRVLRTETAPVVALAV 231
>gi|407701074|ref|YP_006825861.1| hypothetical protein AMBLS11_14185 [Alteromonas macleodii str.
'Black Sea 11']
gi|407250221|gb|AFT79406.1| hypothetical protein AMBLS11_14185 [Alteromonas macleodii str.
'Black Sea 11']
Length = 242
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 112/243 (46%), Gaps = 17/243 (6%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
IPR + I + D H+ VLR+ N + LFNG G I + R +
Sbjct: 3 IPRVYYPNPIPLEQEFELTEDAGHHIATVLRIKPNRPIVLFNGDGNEYSAQIISVQRKKV 62
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
V A D L L + + ++ G KG R D +++K ELG +TP++TE + K
Sbjct: 63 TVEA--DACLSLAKESPLHLHLGQGVSKGDRMDTVLQKSVELGVTEITPVITERC--TVK 118
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPL-VSQSKLAFVAIAEA 217
+ ++ + + I A G+ + VLN P+ ++ L + ++L AE
Sbjct: 119 LDESRWEKKIQQWQKIIIGACEQSGRNIIP-VLNAPVSLNQWLSSSTNTTRLVLAPGAEQ 177
Query: 218 TPLVTALSSSRNESSGL-IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALL 276
+ L+ + G +++GPEG +E E+++ E G +V LGP LR ETA I L
Sbjct: 178 S-----LARQPYNAQGFRLLIGPEGGLSETEIHQANENGYQSVSLGPRILRTETAAITSL 232
Query: 277 ATL 279
+ L
Sbjct: 233 SIL 235
>gi|340619696|ref|YP_004738149.1| m3U1498 16S rRNA methyltransferase [Zobellia galactanivorans]
gi|339734493|emb|CAZ97870.1| m3U1498 16S rRNA methyltransferase [Zobellia galactanivorans]
Length = 235
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 101/231 (43%), Gaps = 20/231 (8%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRID--RTGLDVVALEDLKLVLPQHTQ- 115
+E H+ KVLR D + + NGKG + E I D R VV+ +H Q
Sbjct: 21 EESRHIVKVLRKKEGDTLHITNGKGFIFESEILLADPKRCKAQVVS------TTKKHPQR 74
Query: 116 -WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
W T R +W +EK TE+G +TP+ + RK+ L +
Sbjct: 75 HWLHMVVAPTKNNDRFEWFLEKATEIGVNEITPIFCDR--SERKVIKKERLEK------V 126
Query: 175 ANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGL 234
SA + R + LN + + +Q+ L F+A E V ++
Sbjct: 127 VQSA-MKQSLRTYLPKLNDAIAYKDYIAQ-AQNGLLFIAHCEEEEKVDLKRRVAADTDVT 184
Query: 235 IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSDS 285
I++GPEGDF+ +E+ ++G V LG +RLR ETA I T+ + ++S
Sbjct: 185 ILIGPEGDFSPEEIRLARKSGFLPVSLGEYRLRTETAAIVACTTVTMINNS 235
>gi|167586100|ref|ZP_02378488.1| hypothetical protein BuboB_12224 [Burkholderia ubonensis Bu]
Length = 255
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 106/246 (43%), Gaps = 35/246 (14%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF S G ++ + D H +VLRL D + LF+G GG + ID+
Sbjct: 10 VPRFFVEAALSAGAVLALPADVARH-AQVLRLQPGDALVLFDGTGGQYRARLVEIDKRS- 67
Query: 99 DVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
A+ L P + + V A G G + DW++EK ELG ++ PL T +
Sbjct: 68 ---AVAQLDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAIAPLSTSRGV-V 123
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMV----------LNPPMKIDGLLPLV-- 204
R G+ + G + S G R+ ++ P + DG L L+
Sbjct: 124 RLSGERAEKRVAHWRGIVRASCEQCGRNRVPDVAPVRGFDAWLDALPAARADGELRLLLS 183
Query: 205 SQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPH 264
++ + F ++ +A P +S +++GPEG + E + G TA+ LGP
Sbjct: 184 PRASMPFASLPDAPP----------AASVTLLIGPEGGLSPDEEHAARTHGFTALSLGPR 233
Query: 265 RLRVET 270
LR ET
Sbjct: 234 VLRTET 239
>gi|325280830|ref|YP_004253372.1| Ribosomal RNA small subunit methyltransferase E [Odoribacter
splanchnicus DSM 20712]
gi|324312639|gb|ADY33192.1| Ribosomal RNA small subunit methyltransferase E [Odoribacter
splanchnicus DSM 20712]
Length = 234
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 97/224 (43%), Gaps = 11/224 (4%)
Query: 50 QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLV 109
+G I + DE H +VLRL + V L +GKG EG I+R + G ++ + +L
Sbjct: 10 EGDIYTLNADESRHCVRVLRLGAGEAVSLVDGKGTWYEGVIERAEVRGCEIRITDRRELY 69
Query: 110 LPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNF 169
++ + A T R +W++EKCTE+G +T LL H RK+ L
Sbjct: 70 GRRNFHLH-LAVAPTKNIDRIEWMLEKCTEMGIDEIT-LLHAAH-SERKVVKEERLE-KV 125
Query: 170 YYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRN 229
+ S Y + LNP L+ + F+A R
Sbjct: 126 IVAAMKQSLKAYLPR------LNPMTDFRQLVTSCREPH-KFIAHCNEGDKKRLDEVYRP 178
Query: 230 ESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
+I++GPEGDF+E+EV G V LG RLR ETA I
Sbjct: 179 GEDVVILIGPEGDFSEEEVVLARHHGFVPVTLGTSRLRTETAGI 222
>gi|182626905|ref|ZP_02954639.1| RNA methyltransferase, RsmE family [Clostridium perfringens D str.
JGS1721]
gi|177907755|gb|EDT70367.1| RNA methyltransferase, RsmE family [Clostridium perfringens D str.
JGS1721]
Length = 250
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 103/222 (46%), Gaps = 12/222 (5%)
Query: 55 RVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHT 114
++ G++ H+ KVLR+ ++V + N + G ++ +++ + + LE KL + +
Sbjct: 17 KITGEDVKHIYKVLRVKAGEKVVVNNLESEEFLGEVEEVNKQEVSIKILE--KLDVNNES 74
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
N+ G K + D +V+KC ELG + P +T+ + + G+ L I
Sbjct: 75 NLNITLFQGMPKAAKMDLIVQKCVELGVSEIIPTITD-RVDVKLKGEFKKLD---RLNKI 130
Query: 175 ANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT-----PLVTALSSSRN 229
A A + + VL P M +L + Q L + AT +V ++ +
Sbjct: 131 ALEACKQSKRTVIPQVLEP-MDFKEVLEKIDQLDLMVIPYENATGYGIRAMVNSIEDKDS 189
Query: 230 ESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA 271
+ I+VGPEG F E E+ + E GA + LGP LR ETA
Sbjct: 190 IKNVGIMVGPEGGFEESEIEALKEKGAHIITLGPRILRTETA 231
>gi|374703240|ref|ZP_09710110.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas sp. S9]
Length = 239
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 104/218 (47%), Gaps = 14/218 (6%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQ-HTQWNVFAA 121
++++VLR D V+LF+G G G + G V++E + + Q + ++
Sbjct: 26 YISRVLRHGVGDAVQLFDGSGNEFLG---ELIEVGKKAVSVELRQCIAGQPESPLSIHLG 82
Query: 122 FGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVY 181
G +G R DW ++K TELGA ++P+++E ++ D ++ +A SA
Sbjct: 83 QGLSRGERMDWAIQKATELGATEISPIVSER--CEVRLKDERADKRMAHWRQVAISACEQ 140
Query: 182 GGQRLHEMVLNPPMKI-DGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPE 240
G+ + ++ +PP+ + D L + +Q KL +AE L S S ++GPE
Sbjct: 141 CGRSVVPLI-HPPISLNDWLAQIDAQLKLVLHPVAEP------LESHAKPQSLAFLIGPE 193
Query: 241 GDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
G + EV + G A LGP LR ETA + L+
Sbjct: 194 GGLNDAEVEQAKAQGFHAARLGPRVLRTETAPVVALSV 231
>gi|398844107|ref|ZP_10601210.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM84]
gi|398254898|gb|EJN39952.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM84]
Length = 240
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 111/239 (46%), Gaps = 18/239 (7%)
Query: 46 RFFSQGGIVRVEGD----EFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVV 101
RFF + E D + ++ +VLR++ D V+LF+G G G + + + + V
Sbjct: 5 RFFIDAPLSLGEHDLPEAQAHYIGRVLRMAPGDAVQLFDGSGQEYLGQLLEVGKKTVRV- 63
Query: 102 ALEDLKLVLPQH--TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
L LP + ++ G +G R DW ++K TELG +TP+++E ++
Sbjct: 64 ---SLDQALPGQADSPLHIHLGQGLSRGERMDWAIQKATELGVNEITPIVSER--CEVRL 118
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
D ++ +A SA G R V++PP+ + + S++ L V P
Sbjct: 119 KDERADKRLAHWRQVAISACEQCG-RSTLPVIHPPVTLAEWIK-GSEADLKLVL----HP 172
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
+ L+S + ++GPEG +E EV++ AG A LGP LR ETA + LA
Sbjct: 173 VAEPLTSHEKPARLAFLIGPEGGLSEAEVDQAKAAGFHAARLGPRVLRTETAPVVALAV 231
>gi|374594613|ref|ZP_09667617.1| Ribosomal RNA small subunit methyltransferase E [Gillisia limnaea
DSM 15749]
gi|373869252|gb|EHQ01250.1| Ribosomal RNA small subunit methyltransferase E [Gillisia limnaea
DSM 15749]
Length = 236
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 104/233 (44%), Gaps = 23/233 (9%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
+E H+ KVLR D + + NG G L + I I +E P + +
Sbjct: 21 EESKHIVKVLRKKQGDLLHVTNGTGFLFKTEIILITAQQCIAKVIEVEAEKKPDY--YLH 78
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSA 178
A T R +W +EK TE+G Q +TP++ E H + + + N F + SA
Sbjct: 79 LAVAPTKMNDRYEWFLEKSTEIGIQEITPIICE-HSERKFVKSNRFER-------VLQSA 130
Query: 179 FVYGGQRLHEMV--LNPPMKIDGLLPLVSQSKLA---FVAIAEATPLVTALSS-SRNESS 232
Q LH + LN P+ + + QS + ++A E +L S + S
Sbjct: 131 M---KQSLHFSIPKLNEPLSVSEFI----QSDIKGEKYIAHCEEDKQRASLKSLIKPGES 183
Query: 233 GLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSDS 285
I++GPEGDF+ E+ + G T V LG RLR ETA I T+ L +++
Sbjct: 184 STILIGPEGDFSLAEIELALNNGWTPVSLGKSRLRTETAAIVACHTIALANEN 236
>gi|404254292|ref|ZP_10958260.1| 16S ribosomal RNA methyltransferase RsmE [Sphingomonas sp. PAMC
26621]
Length = 246
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 104/229 (45%), Gaps = 20/229 (8%)
Query: 45 PRFFSQG----GIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV 100
PR F + G +RVEG + ++ V+R+ D V+LF+G+ G G + + L +
Sbjct: 13 PRLFVEHRLARGPLRVEGAQAHYLATVMRMKPGDPVKLFDGESGEWLGVAASVGKRDLML 72
Query: 101 VALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIG 160
+ L+ +H +++ +K GR DW+ EK ELG + P+LT + R G
Sbjct: 73 DVTDQLRAR--EHVP-DLWLCAAPIKKGRIDWVAEKACELGVSRLVPVLTRRTIVDRLNG 129
Query: 161 DNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLL-PLVSQSKLAFVAIAEATP 219
+ + +A G + E L+ P+K++ LL + L F TP
Sbjct: 130 ER-------LRAHMIEAAEQCGRTAVPE--LSEPVKLNNLLRDWPAGRALYFADETGGTP 180
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKI-VEAGATAVGLGPHRLR 267
A+ I++GPEG F + E + I GATA+ LGP LR
Sbjct: 181 AAAAMRD--GPPCAAILIGPEGGFDDAERDAIRAVPGATAITLGPRILR 227
>gi|300775606|ref|ZP_07085467.1| RsmE family RNA methyltransferase [Chryseobacterium gleum ATCC
35910]
gi|300505633|gb|EFK36770.1| RsmE family RNA methyltransferase [Chryseobacterium gleum ATCC
35910]
Length = 231
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 100/230 (43%), Gaps = 18/230 (7%)
Query: 51 GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEG-CIQRIDRTGLDVVALEDLKLV 109
G V + +E H+ KVLR+ + + + +GKG L G I + G+++ ++K
Sbjct: 10 GNNVIINDEEQQHIVKVLRMKDGEDIHVTDGKGKLASGKLIIEGKKAGIEI---SEIKEN 66
Query: 110 LPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNF 169
+P+ + A T R ++ VEK E+G +T L TE RK N
Sbjct: 67 MPEFSPMLHIAIAPTKNIDRIEFFVEKAVEMGISEITILQTEK--TERK---------NV 115
Query: 170 YYGFIANSAFVYGGQ--RLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSS 227
I A Q R H V+N +KI L + FVA AL +
Sbjct: 116 NIDKIRKQAVAASKQSLRFHFPVINDLIKIQDFLKSIDPEH-TFVAHCHENLERIALKNI 174
Query: 228 RNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
++GPEGDF+EKE+ + E AV LG RLR ETA + + A
Sbjct: 175 PKMEKLTFLIGPEGDFSEKEIAFLAENKVRAVSLGNQRLRTETAGVFVAA 224
>gi|190890510|ref|YP_001977052.1| 16S ribosomal RNA methyltransferase RsmE [Rhizobium etli CIAT 652]
gi|190695789|gb|ACE89874.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
Length = 245
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 107/222 (48%), Gaps = 14/222 (6%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
S G +V ++F ++ VLR+ + + LFNG+ G + + R + + A+E+ +
Sbjct: 16 LSAGAVVEASAEQFNYLANVLRMEADAEILLFNGRDGEWKASLSFPTRKRILLTAIEETR 75
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
PQ ++ F LK GR D+LV+K E+GA + P++T+ H+Q KI + L
Sbjct: 76 ---PQPLPCDLHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQ-HVQG-KITNLDKLRA 130
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLP-LVSQSKLAFVAIAEATPLVTALSS 226
N A V G + E P+K+ LL + ++ + +A + S
Sbjct: 131 NVVEA--AEQCGVLGIPDVAE-----PVKLSDLLDRWPKERRIIYCDEGDAGQNPLPVLS 183
Query: 227 SRNESSGLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLR 267
+ E ++VGPEG F+E+E ++ TA+ LGP LR
Sbjct: 184 AIRERHLALLVGPEGGFSEEERARLRSLDFVTAIPLGPRILR 225
>gi|89091936|ref|ZP_01164891.1| hypothetical protein MED92_07211 [Neptuniibacter caesariensis]
gi|89083671|gb|EAR62888.1| hypothetical protein MED92_07211 [Oceanospirillum sp. MED92]
Length = 242
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 114/252 (45%), Gaps = 36/252 (14%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
IPRF+ S+ +++ + H+++ LR+ D++ LFNG G + ++++
Sbjct: 3 IPRFYDPQPLSEKSEIQLSDEVVQHVSRALRMKVGDQLILFNGNGVEYLAELSQVEKRKA 62
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTEL------ 152
+E ++ T V +G R D+ V+K TE+G +TPL +E
Sbjct: 63 SAHIVETIQSN--SETPLTVHIGQSLSRGERMDYAVQKSTEMGVHQITPLFSERCEVKLP 120
Query: 153 -HLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPM--KIDGLLPLVSQ--S 207
Q+++I ++ IA SA G+ +NPP+ K + L ++Q +
Sbjct: 121 EERQAKRIN---------HWQQIAISACEQSGR------VNPPLIAKPENLKSWLAQQDA 165
Query: 208 KLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLR 267
+L V + L + SS +++GPEG TE EV E G + LGP +R
Sbjct: 166 ELKLVLHHHSE---MPLQEMKPPSSVALLIGPEGGLTEDEVELAQEFGFKPLTLGPRVMR 222
Query: 268 VETATIALLATL 279
ETA +A L L
Sbjct: 223 TETAPVAALTLL 234
>gi|315924412|ref|ZP_07920634.1| RsmE family RNA methyltransferase [Pseudoramibacter alactolyticus
ATCC 23263]
gi|315622291|gb|EFV02250.1| RsmE family RNA methyltransferase [Pseudoramibacter alactolyticus
ATCC 23263]
Length = 245
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 106/245 (43%), Gaps = 19/245 (7%)
Query: 46 RFFSQ-----GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV 100
RFF + G + ++G+EF H K +R+ N+ E+ +G G I ++ L
Sbjct: 3 RFFVKPEQIHGDQIIIDGEEFKHAAKAVRIRDNELFEVCDGSGFDYHCLITCREKEQLTA 62
Query: 101 VALEDLKLV--LPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
V E LP + V G KG + D +V+K TELG SV P ++ + +
Sbjct: 63 VIQEKRPSAGELP----YTVTLFQGLPKGQKMDEIVQKNTELGISSVVPFVSAFCVAKLE 118
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMV--LNPPMKIDGLLPLVSQSKLAFVAIAE 216
D C G AF Q + ++ P+ + + + L +A
Sbjct: 119 EPDKVARKC----GRWQRIAFEAAKQSKRGKIPQVHEPVAFQRMCEIAADFDLVIIAYEH 174
Query: 217 AT--PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274
PL T L + +IVG EG F+ +EV ++ AGA +V LG LR ETA +
Sbjct: 175 EMDRPLQTVLEGRTQYRNIAVIVGSEGGFSREEVERLEAAGAKSVSLGRRILRTETAGMV 234
Query: 275 LLATL 279
LLA +
Sbjct: 235 LLAQI 239
>gi|282891340|ref|ZP_06299842.1| hypothetical protein pah_c050o135 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338175026|ref|YP_004651836.1| hypothetical protein PUV_10320 [Parachlamydia acanthamoebae UV-7]
gi|281498837|gb|EFB41154.1| hypothetical protein pah_c050o135 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336479384|emb|CCB85982.1| putative uncharacterized protein [Parachlamydia acanthamoebae UV-7]
Length = 241
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 109/259 (42%), Gaps = 36/259 (13%)
Query: 40 SRGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
R IP+ F +G + +EG EF H+ V+R + VE+ NG+GG ++ +++
Sbjct: 4 ERYYIPQPFQKGSELIIEGQEFHHLVHVMRTQVGESVEVVNGEGGFGHAVLEHLEKKRAI 63
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSV---------TPLLT 150
E ++ P + V A K R D+++EK TELG LT
Sbjct: 64 FRVEETVQHPKP---AFEVILAQAIPKINRLDFILEKGTELGMTQFWLFPSQRGERKQLT 120
Query: 151 ELHLQS-RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPM-KIDGLLPLVSQSK 208
E ++ R + C +Y L +++ PP+ K + LPL +
Sbjct: 121 EHQIERMRALSIAAMKQCGSFY--------------LPTILMKPPLEKWERNLPLPA--- 163
Query: 209 LAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRV 268
L +A V L R ++ + VGPE F+ +E + V L PH LR
Sbjct: 164 LFGNVQPDAPSCVEKLKQERFQNGVIFFVGPESGFSYEEEKTLQALDVEGVKLHPHILRT 223
Query: 269 ETATIALLATLMLCSDSQQ 287
+TA IA LC+ +QQ
Sbjct: 224 DTAAIA-----ALCAITQQ 237
>gi|395796056|ref|ZP_10475355.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas sp. Ag1]
gi|421142548|ref|ZP_15602522.1| phosphoribosyl-dephospho-CoA transferase [Pseudomonas fluorescens
BBc6R8]
gi|395339694|gb|EJF71536.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas sp. Ag1]
gi|404506221|gb|EKA20217.1| phosphoribosyl-dephospho-CoA transferase [Pseudomonas fluorescens
BBc6R8]
Length = 239
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 101/219 (46%), Gaps = 16/219 (7%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR+S D V+LF+G G + + + + V E + Q +
Sbjct: 26 YISRVLRMSEGDPVQLFDGSGQEFRASLLEVGKKRVVVQVTETFAGQVESRLQ--IHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLT---ELHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G +G R DW ++K TELG +TP+ + E+ L+ + D ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVNEITPIFSDRCEVRLKDER-ADKRLQ----HWRQVAISAC 138
Query: 180 VYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGP 239
G R V++PP+ + L +++ L V A PLV S S ++GP
Sbjct: 139 EQCG-RSRVPVIHPPLLLADWLKQ-AEADLKLVLHPVAEPLV----SHAKPGSLAFLIGP 192
Query: 240 EGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
EG T+ EV AG A LGP LR ETA + LA
Sbjct: 193 EGGLTDGEVETAQGAGFHAARLGPRVLRTETAPVVALAV 231
>gi|422594373|ref|ZP_16668664.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|422680294|ref|ZP_16738566.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
tabaci str. ATCC 11528]
gi|330984681|gb|EGH82784.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331009640|gb|EGH89696.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
tabaci str. ATCC 11528]
Length = 239
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 113/238 (47%), Gaps = 14/238 (5%)
Query: 44 IPRFFSQGGIVRVEGD----EFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
+ RFF++ + E + + ++++VLR++ D ++LF+G G G + + + +
Sbjct: 3 LSRFFTEAPLSLGEHELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKRVH 62
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
V E + + + G +G R DW ++K TELG +TP+++E ++
Sbjct: 63 VQLTESFAGQV--ESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSER--CEVRL 118
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
D ++ IA SA G+ + V++ PM + + +++ L V P
Sbjct: 119 KDERAEKRQAHWQQIAISACEQCGRSV-VPVIHAPMPLAEWIKH-TEADLKLVL----HP 172
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
+ L+S +S ++GPEG + EV++ AG A LGP LR ETA + L+
Sbjct: 173 VAEPLTSHDKPASLAFLIGPEGGLNDAEVDQAQAAGFHAARLGPRVLRTETAPVVALS 230
>gi|317128303|ref|YP_004094585.1| hypothetical protein Bcell_1591 [Bacillus cellulosilyticus DSM
2522]
gi|315473251|gb|ADU29854.1| protein of unknown function DUF558 [Bacillus cellulosilyticus DSM
2522]
Length = 250
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 107/246 (43%), Gaps = 22/246 (8%)
Query: 45 PRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL--DVVA 102
P+ F + +V + GD+ H+++V+R+ D + G E I + + + +
Sbjct: 8 PQMFHEDHVV-ISGDDAKHISRVMRMEQGDNIICCTTSGVCYECVISEMKDSYIYATIEK 66
Query: 103 LEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDN 162
E + LP NV G KG + +W+++K TELGA++ P E +
Sbjct: 67 QESKSVELP----VNVTIGHGLPKGDKFEWVIQKGTELGAKNFLPFEAERSIVKLDKKKA 122
Query: 163 GFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKID---GLLPLVSQSKLAFVAIAEA-- 217
+ IA A ++ H L M++ LL V VA EA
Sbjct: 123 DKKIDR--WNKIAKEA----AEQSHRQQLPKVMEVQRFSQLLDHVDGYSYVLVAYEEAAK 176
Query: 218 ----TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
+ L + L + S L + GPEG F+++E+N++ + GA GLGP LR ETA +
Sbjct: 177 NDEKSQLFSVLQEVKKGESILFLFGPEGGFSDREINELTKKGALICGLGPRILRSETAPL 236
Query: 274 ALLATL 279
L +
Sbjct: 237 YGLTAI 242
>gi|429332061|ref|ZP_19212796.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida CSV86]
gi|428763292|gb|EKX85472.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida CSV86]
Length = 239
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 104/221 (47%), Gaps = 20/221 (9%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQ--WNVFA 120
++++VLR+S D V+LF+G G G + + + + V L LP + ++
Sbjct: 26 YISRVLRMSAGDAVQLFDGSGQEYLGQLLEVGKKTVRV----SLAEALPGQAESPLHIHL 81
Query: 121 AFGTLKGGRADWLVEKCTELGAQSVTPLLT---ELHLQSRKIGDNGFLSCNFYYGFIANS 177
G +G R DW ++K TELG +TP+++ E+ L+ + D ++ +A S
Sbjct: 82 GQGLSRGERMDWAIQKATELGVNVITPIVSDRCEVRLKDER-ADKRLA----HWRQVAIS 136
Query: 178 AFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIV 237
A G+ + NPP+ + L S L V A PLV S +S ++
Sbjct: 137 ACEQCGRSTVPRI-NPPLTLAEWLA-ASDEALKLVLHPVAEPLV----SHARPASLAFLI 190
Query: 238 GPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
GPEG ++ EV + +G + LGP LR ETA + LA
Sbjct: 191 GPEGGLSDAEVEQARASGFQSARLGPRVLRTETAPVVALAV 231
>gi|296269135|ref|YP_003651767.1| hypothetical protein Tbis_1152 [Thermobispora bispora DSM 43833]
gi|296091922|gb|ADG87874.1| protein of unknown function DUF558 [Thermobispora bispora DSM
43833]
Length = 246
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 101/224 (45%), Gaps = 8/224 (3%)
Query: 58 GDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWN 117
G E H V RL +RV++ +G G + E C+ + TG DV+ L+ + +
Sbjct: 22 GPEGHHAATVRRLRPGERVDITDGAGRVAE-CV--VAETGKDVLTARVLRRFHAEPPRPR 78
Query: 118 VFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANS 177
+ KG R + VE TE G + P + K GD + + +
Sbjct: 79 LIVVQALAKGDRGELAVEMMTEAGVDVIVPWAASRCVVQWK-GDRAAKALARWRSTAREA 137
Query: 178 AFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSG--LI 235
A +R H + + L+S ++LA V EA ++ ++ R S+G ++
Sbjct: 138 A--KQSRRFHLPEVTEQASTAQVAELISGAELAVVLHEEAERPLSGITPPRGPSAGDIVV 195
Query: 236 IVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
+VGPEG TE+E+ ++ EAGA LGP LR TA +A A L
Sbjct: 196 VVGPEGGITEEELARLSEAGAVPALLGPTVLRTSTAGVAAAAVL 239
>gi|163754910|ref|ZP_02162031.1| hypothetical protein KAOT1_02812 [Kordia algicida OT-1]
gi|161324977|gb|EDP96305.1| hypothetical protein KAOT1_02812 [Kordia algicida OT-1]
Length = 235
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 105/242 (43%), Gaps = 16/242 (6%)
Query: 45 PRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE 104
P S+ +E H+ +VLR +D + + NGKG + I D+ +V ++
Sbjct: 7 PEITSETKNYTFSKEESRHIVRVLRKKEDDILHITNGKGYIFSAIITVADQKNC-MVKIQ 65
Query: 105 DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGF 164
+ PQ + A T R +W +EK TE+G ++TP++ + H + + I F
Sbjct: 66 SFEF-QPQKSYKLHLAVAPTKMNDRYEWFLEKATEIGIDTITPIICD-HSERKVIKAERF 123
Query: 165 LSCNFYYGFIANSAFVYGGQRLHEMV--LNPPMKIDGLLPLVSQSKLAFVAIAEATPLVT 222
I SA Q L L P + + + +L F+A E +
Sbjct: 124 EK-------IIQSA---TKQSLSAYFPKLKPAISFSNFISTHTDEQL-FIAHCEENEKQS 172
Query: 223 ALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLC 282
+ + + I++GPEGDF+ KE+ ++ V LG RLR ETA I +++
Sbjct: 173 LKEALKIQKDVTILIGPEGDFSTKEIQLALDHNYIPVTLGETRLRTETAAIVACHSVVFL 232
Query: 283 SD 284
++
Sbjct: 233 NE 234
>gi|375011395|ref|YP_004988383.1| RNA methyltransferase, RsmE family [Owenweeksia hongkongensis DSM
17368]
gi|359347319|gb|AEV31738.1| RNA methyltransferase, RsmE family [Owenweeksia hongkongensis DSM
17368]
Length = 231
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 101/220 (45%), Gaps = 11/220 (5%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQ 115
+E +E H T+VLR+S+ D + + +GKG + + + + ++ED+ +
Sbjct: 16 LEKEESHHATRVLRMSSGDSLLVTDGKGTIYQATLTAASKLETRF-SIEDVYKSEDNPSG 74
Query: 116 WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
A T R ++ +EK TE+G +TP++ + + D G A
Sbjct: 75 HLHIAIAPTKSNDRFEFFLEKATEIGISEITPIICDHSERKVYKTDRG----QKIVSAAA 130
Query: 176 NSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLI 235
+ LHE P+ + L + + F+A E + L + S L+
Sbjct: 131 KQSLACWWPILHE-----PITLKEFLTRDPEGE-KFIAHCEKDDMPNILKELPSFSKVLM 184
Query: 236 IVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIAL 275
++GPEGDF+ +E++K EAG LGP RLR ETA +A+
Sbjct: 185 LIGPEGDFSPREIDKAREAGYQECSLGPKRLRTETAGLAV 224
>gi|440739280|ref|ZP_20918798.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas fluorescens
BRIP34879]
gi|447918804|ref|YP_007399372.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas poae
RE*1-1-14]
gi|440379877|gb|ELQ16457.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas fluorescens
BRIP34879]
gi|445202667|gb|AGE27876.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas poae
RE*1-1-14]
Length = 239
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 104/218 (47%), Gaps = 16/218 (7%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDL--KLVLPQHTQWNVFA 120
++++VLR+ D V+LF+G G G + + + + V E + P H +
Sbjct: 26 YISRVLRMVEGDAVQLFDGSGEEFLGSLLDVGKKRVTVQLTESFAGQAESPLH----IHL 81
Query: 121 AFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFV 180
G +G R DW ++K TELG ++TP+ +E ++ D ++ +A SA
Sbjct: 82 GQGLSRGERMDWAIQKATELGVNAITPIFSER--CEVRLKDERADKRLQHWRQVAISACE 139
Query: 181 YGGQRLHEMVLNPPMKI-DGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGP 239
G R V++PP+ + D L + KL +AE P+V S ++ ++GP
Sbjct: 140 QCG-RSTVPVIHPPLLLADWLKQTEADLKLVLHPVAE--PMV----SHAKPANLAFLIGP 192
Query: 240 EGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
EG T+KEV AG A LGP LR ETA + LA
Sbjct: 193 EGGLTDKEVEIAQTAGYHAARLGPRVLRTETAPVVALA 230
>gi|66043720|ref|YP_233561.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
syringae B728a]
gi|422673953|ref|ZP_16733309.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
aceris str. M302273]
gi|63254427|gb|AAY35523.1| 16S rRNA m(3)U-1498 methyltransferase [Pseudomonas syringae pv.
syringae B728a]
gi|330971683|gb|EGH71749.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
aceris str. M302273]
Length = 239
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 103/215 (47%), Gaps = 10/215 (4%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR++ D ++LF+G G G + + + + V E + + +
Sbjct: 26 YISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKRVHVQLTESFAGQV--ESGLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TP+++E ++ D ++ IA SA
Sbjct: 84 GLSRGERMDWAIQKATELGVSEITPIVSER--CEVRLKDERAEKRQAHWQQIAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G+ + V++ PM + + +++ L V P+ L+S +S ++GPEG
Sbjct: 142 GRSV-VPVIHAPMPLAEWIKH-TEADLKLVL----HPVAEPLTSHDKPASLAFLIGPEGG 195
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
+ EV + +AG A LGP LR ETA + L+
Sbjct: 196 LNDAEVTQAQDAGFHAARLGPRVLRTETAPVVALS 230
>gi|395495359|ref|ZP_10426938.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas sp. PAMC
25886]
Length = 239
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 101/219 (46%), Gaps = 16/219 (7%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR+S D V+LF+G G + + + + V E + Q +
Sbjct: 26 YISRVLRMSEGDAVQLFDGSGQEFRASLLEVGKKRVVVQVTETFAGQIESPLQ--IHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLT---ELHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G +G R DW ++K TELG +TP+ + E+ L+ + D ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVNEITPIFSDRCEVRLKDER-ADKRLQ----HWRQVAISAC 138
Query: 180 VYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGP 239
G R V++PP+ + L V ++ L V A PLV S S ++GP
Sbjct: 139 EQCG-RSRVPVIHPPLLLADWLKQV-EADLKLVLHPVAEPLV----SHAKPGSLAFLIGP 192
Query: 240 EGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
EG T+ EV AG + LGP LR ETA + LA
Sbjct: 193 EGGLTDGEVETAQGAGFHSARLGPRVLRTETAPVVALAV 231
>gi|406915255|gb|EKD54353.1| hypothetical protein ACD_60C00090G0002 [uncultured bacterium]
Length = 243
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 108/222 (48%), Gaps = 17/222 (7%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQ--WNVFA 120
H+ +VLR S D +FNG+GG IQ ID+ + V ++K ++ + + +++
Sbjct: 26 HLARVLRASIGDPAIIFNGEGGEYASVIQSIDKKTVTV----EIKQLIDRDVESSLDLWL 81
Query: 121 AFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNFYYGFIANS 177
A G +G + D+ ++K ELG + + PL TE + L S + ++ I S
Sbjct: 82 AQGISRGEKMDYTIQKAVELGVKKIIPLFTERCNVKLDSERSKKR-----IEHWQSIIIS 136
Query: 178 AFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIV 237
A G+ +L P +D L +++ FV ++ T + N S ++++
Sbjct: 137 ACEQCGRNTVPTIL-APQSLDVWLK-TAKADHCFV-LSPHTDKKLKTFTIENHSRVILLI 193
Query: 238 GPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
GPEG +E+E+ + V+ + LGP LR ETA IA + L
Sbjct: 194 GPEGGLSEQEMTQAVQQCFLPLNLGPRILRTETAGIAAMTAL 235
>gi|393786947|ref|ZP_10375079.1| RsmE family RNA methyltransferase [Bacteroides nordii CL02T12C05]
gi|392658182|gb|EIY51812.1| RsmE family RNA methyltransferase [Bacteroides nordii CL02T12C05]
Length = 230
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 99/245 (40%), Gaps = 51/245 (20%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWN- 117
+E H +VLRL+ D + L +G G I V LE +PQ W+
Sbjct: 18 EEAQHCVRVLRLNIGDEITLTDGNGNFYRAEITAATNKRCLVKILE----TIPQEPLWSG 73
Query: 118 --VFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
A T R +W EK TE+G +T FL+C F
Sbjct: 74 HLHIAMAPTKNMDRNEWFAEKATEIGFDELT-----------------FLNCRF------ 110
Query: 176 NSAFVYGGQRLHEMV--------------LNPPMKIDGLL--PLVSQSKLAFVAIAEATP 219
+ V +R+ ++V LN D + Q +A E
Sbjct: 111 SERKVIKMERIEKIVVSAIKQSLKARLPRLNEMTDFDKFITQEFTGQKFIAHCYEGEKPL 170
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
L L + L+++GPEGDF+E+EV K +E G + LG RLR ETA AL+AT+
Sbjct: 171 LKNILKPGED---ALVLIGPEGDFSEEEVTKAIEKGFQPISLGKSRLRTETA--ALVATM 225
Query: 280 MLCSD 284
++ SD
Sbjct: 226 VVNSD 230
>gi|114705941|ref|ZP_01438844.1| surface protein [Fulvimarina pelagi HTCC2506]
gi|114538787|gb|EAU41908.1| surface protein [Fulvimarina pelagi HTCC2506]
Length = 295
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 109/231 (47%), Gaps = 27/231 (11%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ VLR D V LFNG+ G +++ + LD+ + +++ Q +++ F
Sbjct: 78 YLLNVLRKDEGDSVLLFNGQDGEWRAELRKASKKKLDLFPVAKVRV---QQPPYDLIYCF 134
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTEL----HLQSRKIGDNGFLSCNFYYGFIANSA 178
LK GR D++V+K E+GA + P+LT +++ KI N + A
Sbjct: 135 APLKVGRLDYMVQKAVEMGAGILQPVLTHRTQNHRVRTDKIRANAIEA--------AEQC 186
Query: 179 FVYGGQRLHEMVLNPPMKIDGLLPLVSQS-KLAFV--AIAEATPLVTALSSSRNESSGLI 235
+ E P+K D LL S S L F + A+P + AL + GLI
Sbjct: 187 GILAIPECRE-----PVKFDDLLSNWSSSIPLVFCDEKMDAASP-IDALRELGDGRKGLI 240
Query: 236 IVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLRVETATIALLATLM-LCSD 284
I GPEG F++ E ++ A TA+ LGP LR +TA +A L + +C D
Sbjct: 241 I-GPEGGFSQDERVSLLGAEFTTAISLGPRILRADTAAVAALTMVQAVCGD 290
>gi|119383376|ref|YP_914432.1| 16S ribosomal RNA methyltransferase RsmE [Paracoccus denitrificans
PD1222]
gi|119373143|gb|ABL68736.1| protein of unknown function DUF558 [Paracoccus denitrificans
PD1222]
Length = 239
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 109/233 (46%), Gaps = 18/233 (7%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
++G + + D+ +++ V+R D + +FNG+ G I+RI + G ALE L+
Sbjct: 12 LAEGQGIELNADQSHYLSSVMRQGAGDEILVFNGQDGEWLARIERIAKRG---GALEALR 68
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
PQ +++ F +K R D++VEK E+GA + P+ T+ H S +I +
Sbjct: 69 QTAPQLNPPDLWLVFAPIKKARTDFIVEKAAEMGAARILPVQTD-HTNSERIRQDRL--- 124
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMK--IDGLLPLVSQSKLAFVAIAEATPLVTALS 225
+A GG + E+ P+ +DG + ++ + A A P +
Sbjct: 125 ---QAHAVEAAEQCGGTHVPEVCDLVPLSRLLDG---WDAGRRILWADEALAGP--AQVL 176
Query: 226 SSRNESSGLIIVGPEGDFTEKEVNKIVEAGA-TAVGLGPHRLRVETATIALLA 277
S I++GPEG ++E E ++ T + LGP LR +TA +A LA
Sbjct: 177 SGLPRGPWAILIGPEGGWSESERKRLSAMDCVTRIALGPRILRADTAAVASLA 229
>gi|403668268|ref|ZP_10933543.1| hypothetical protein KJC8E_05741 [Kurthia sp. JC8E]
Length = 246
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 104/241 (43%), Gaps = 21/241 (8%)
Query: 50 QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDR-TGLDVVALEDLKL 108
Q G R+ GD+ H+++V+R+ +++ + + E I I DV+ + K
Sbjct: 11 QNGKARLTGDDARHISRVMRMREGEQLIVVEQEK---EAHICEIHAFEEQDVLVKQTGKT 67
Query: 109 VLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI----GDNGF 164
+ V A G KG + D +V+K TELG S+ P +R I G
Sbjct: 68 IPSPELPIQVTIACGLPKGDKLDLIVQKGTELGMHSMIPFDA-----ARSIVKWDAKKGA 122
Query: 165 LSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVA------IAEAT 218
+A R H V++ + L+ +Q + FVA IAE T
Sbjct: 123 KKTERLQKIAKEAA--EQSHRTHIPVISSAISFAQLVQSCAQYDVVFVADEEDAKIAERT 180
Query: 219 PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
LV L + + S L+I GPEG E K+ EAGA LGP LR ETA + +LA
Sbjct: 181 RLVDKLKKTVDCQSMLVIFGPEGGIDRVEAEKLREAGAITTSLGPRILRAETAPLYMLAA 240
Query: 279 L 279
+
Sbjct: 241 I 241
>gi|456357821|dbj|BAM92266.1| conserved hypothetical protein [Agromonas oligotrophica S58]
Length = 251
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 115/244 (47%), Gaps = 26/244 (10%)
Query: 45 PRFFS-----QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDR-TGL 98
PR F +GG V ++ + ++ VLRL D V +FNG+ G + I+ R GL
Sbjct: 9 PRLFVDAPLIEGGAVALDRSQSNYLGNVLRLGAGDHVLIFNGRDGEWQAAIEGRKRPDGL 68
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
+ + V PQ ++ F LK R D++V+K E+GA ++TP+LT SR
Sbjct: 69 TI-----RQRVRPQDRLADIAYVFAPLKHARLDYMVQKAVEMGAATLTPVLTRHTQVSRV 123
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT 218
G+ + N + +A G L E + P+ ++ + S++ V EA
Sbjct: 124 NGER--MRAN-----VIEAAEQCGILSLAE--VKDPVPLERFIRERPGSRM-LVFCDEAA 173
Query: 219 PLVTALSSSRNESSG----LIIVGPEGDFTEKEVNKIV-EAGATAVGLGPHRLRVETATI 273
+ L + R S+G +++GPEG F E ++ + T + LGP LR +TA +
Sbjct: 174 EIADPLQALRGGSAGGAGIDLLIGPEGGFAADERELLLRQPHVTRLALGPRILRADTAGV 233
Query: 274 ALLA 277
A LA
Sbjct: 234 AALA 237
>gi|410637894|ref|ZP_11348464.1| 16S rRNA (uracil1498-N3)-methyltransferase [Glaciecola lipolytica
E3]
gi|410142580|dbj|GAC15669.1| 16S rRNA (uracil1498-N3)-methyltransferase [Glaciecola lipolytica
E3]
Length = 242
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 101/222 (45%), Gaps = 10/222 (4%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
D H+ VLRLS + LFNG G E + + AL D KL + + N+
Sbjct: 23 DAANHIVSVLRLSEGHPLVLFNGDGN--EYSAELVSVKKRQASALVDAKLSISVESGLNI 80
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSA 178
G +G R D+ ++K ELG +TPL+TE K+ + + + + SA
Sbjct: 81 HLGQGVSRGDRMDFAIQKAVELGVTEITPLITE--RCGVKLSAERWEKKSIQWQKLIISA 138
Query: 179 FVYGGQRLHEMVLNPPMKI-DGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIV 237
G R +L+P M I D +Q +L A+ + A+ + + +++
Sbjct: 139 CEQCG-RNQIPILHPCMSIHDWTRQSTNQLRLTLHPKADKSIKDLAIPPAGVK----LLI 193
Query: 238 GPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
GPEG F+E E+ + G V LGP LR ETA IA +A L
Sbjct: 194 GPEGGFSETEIYATEQVGFQTVQLGPRVLRTETAAIATIAVL 235
>gi|363581410|ref|ZP_09314220.1| 16S ribosomal RNA methyltransferase RsmE [Flavobacteriaceae
bacterium HQM9]
Length = 236
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 106/234 (45%), Gaps = 20/234 (8%)
Query: 49 SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKL 108
SQ ++ +E H+ KVLR ST D V + NGKG L +I G++
Sbjct: 11 SQDTDIQFSKEESKHIVKVLRKSTGDVVFITNGKGYLFTA---KITLAGINKCLATITST 67
Query: 109 VLPQHTQWNVFAAFGTLK-GGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
+ ++ A K R +W +EK TE+G Q +TP++ + H + + + F
Sbjct: 68 EYQNKEKHHIHLAVAPTKMNDRYEWFLEKATEIGIQEITPIICD-HSERKTVKIERFKK- 125
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT---PLVTAL 224
I SA Q H LN + L ++ +A E T L L
Sbjct: 126 ------IIQSAAKQSLQ-YHIPKLNDACSFKDFINL-HKNNTCLIAHCEETDRKSLKRIL 177
Query: 225 SSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
S+S+ S+ ++++GPEGDF+ KE+ + V LG RLR ETA A++AT
Sbjct: 178 SNSKG-SNYILLIGPEGDFSTKEIELALAYNYQPVTLGKTRLRTETA--AVIAT 228
>gi|397171846|ref|ZP_10495244.1| hypothetical protein AEST_30100 [Alishewanella aestuarii B11]
gi|396086564|gb|EJI84176.1| hypothetical protein AEST_30100 [Alishewanella aestuarii B11]
Length = 242
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 103/240 (42%), Gaps = 15/240 (6%)
Query: 45 PRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE 104
P G + + D H+ +VLR+ ++LFNG G I + + L V
Sbjct: 9 PSALPAGAKLALSDDAANHVGRVLRMQAGQPLQLFNGDGKNYTATISEVGKKQLLVTI-- 66
Query: 105 DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGD 161
D P + + G +G R D+ ++K ELG +TPL TE + L + ++
Sbjct: 67 DSSSDNPVESPLRIHLGQGISRGDRMDFAIQKAVELGVTEITPLFTERCGVKLDAERLAK 126
Query: 162 NGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLV 221
+ IA SA G+ + V L +L A AT +
Sbjct: 127 R-----TEQWQKIAISACEQSGRSVVPTVHTAVSLQQWLATPTKALRLTLDPRAAAT--I 179
Query: 222 TALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
L+S+ S +++GPEG FT+ EV++ AG T + LGP LR ETA + ++ L L
Sbjct: 180 KTLTSA---SDIQLVIGPEGGFTDTEVSQTAAAGFTGITLGPRILRTETAALTAISALQL 236
>gi|15894567|ref|NP_347916.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium
acetobutylicum ATCC 824]
gi|337736503|ref|YP_004635950.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium
acetobutylicum DSM 1731]
gi|384458010|ref|YP_005670430.1| hypothetical protein CEA_G1298 [Clostridium acetobutylicum EA 2018]
gi|15024214|gb|AAK79256.1|AE007641_2 Uncharacterized conserved protein, ortholog of YQEU B.subtilis
[Clostridium acetobutylicum ATCC 824]
gi|4104515|gb|AAD02055.1| unknown [Clostridium acetobutylicum DSM 1731]
gi|325508699|gb|ADZ20335.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018]
gi|336290612|gb|AEI31746.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium
acetobutylicum DSM 1731]
Length = 250
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 109/238 (45%), Gaps = 32/238 (13%)
Query: 58 GDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWN 117
GD+ H+ KVLRL ++V + + G I++I++ + V +E+L + + N
Sbjct: 20 GDDVKHIYKVLRLKVGEKVSINDCNSHEFLGEIEQINKENVKVKIIENLDI--NNESPLN 77
Query: 118 VFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIAN- 176
V+ G K + D +V+K TELG + + PL+T+ + + + + F A
Sbjct: 78 VYLYQGFPKAAKMDIIVQKNTELGIREIIPLITQRVVVKNEKSELKKVDRWNRIAFEAAK 137
Query: 177 -------------SAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTA 223
++F + L EM L L+P +Q K+ +A A
Sbjct: 138 QSKRSVIPKVKDIASFNSAIEELKEMDL-------VLVPYENQEKVGMKKVAAAI----- 185
Query: 224 LSSSRNESSGL-IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
+N+ + I++GPEG F E E+ ++ + GA + LGP LR ETA + + +M
Sbjct: 186 ---EKNKIKNVAIVIGPEGGFEETEIEELKKIGAYIITLGPRILRTETAGLVCTSLVM 240
>gi|332142455|ref|YP_004428193.1| hypothetical protein MADE_1015315 [Alteromonas macleodii str. 'Deep
ecotype']
gi|410862667|ref|YP_006977901.1| hypothetical protein amad1_15260 [Alteromonas macleodii AltDE1]
gi|327552477|gb|AEA99195.1| hypothetical protein MADE_1015315 [Alteromonas macleodii str. 'Deep
ecotype']
gi|410819929|gb|AFV86546.1| hypothetical protein amad1_15260 [Alteromonas macleodii AltDE1]
Length = 242
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 107/241 (44%), Gaps = 13/241 (5%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
IPR + I + D H+ VLR+ N + LFNG G + + R +
Sbjct: 3 IPRVYYPNPIPLEQEFELTEDAGHHIATVLRIKPNRPIVLFNGDGNEYSAQVISVQRKKV 62
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
V A D L L + + ++ G KG R D +++K ELG +TP++TE + K
Sbjct: 63 IVEA--DACLSLAKESPLHLHLGQGVSKGDRMDTVLQKSVELGVSEITPVITERC--TVK 118
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT 218
+ ++ + + I A G+ + LN P+ ++ L + + +A
Sbjct: 119 LDESRWEKKIQQWQKIVIGACEQSGRNIIPK-LNAPVSLNTWLSSSTNTTRLVLAPGAEQ 177
Query: 219 PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
PL N +++GPEG ++ E+++ E G +V LGP LR ETA I L+
Sbjct: 178 PLA---RQPYNAQGFRLLIGPEGGLSDTEIHQANENGYQSVSLGPRILRTETAAITSLSI 234
Query: 279 L 279
L
Sbjct: 235 L 235
>gi|83814115|ref|YP_446222.1| hypothetical protein SRU_2116 [Salinibacter ruber DSM 13855]
gi|294508153|ref|YP_003572211.1| hypothetical protein SRM_02338 [Salinibacter ruber M8]
gi|83755509|gb|ABC43622.1| conserved hypothetical protein TIGR00046 [Salinibacter ruber DSM
13855]
gi|294344481|emb|CBH25259.1| conserved hypothetical protein [Salinibacter ruber M8]
Length = 239
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 109/235 (46%), Gaps = 17/235 (7%)
Query: 50 QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVV--ALEDLK 107
+ G V + +E H+ VLR D + + +G GG RID G D V + D +
Sbjct: 13 RAGRVVLPEEEARHLRTVLRGEAGDDMTVVDGDGGWYRA---RIDHVGPDQVVGTITDER 69
Query: 108 LVLPQHTQWNVFAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLS 166
+ + +V A G LK R + VEK ELGA+ V PL T R+ +
Sbjct: 70 DNVGE-PDMDVTVALGILKKRSRFETFVEKAVELGARRVVPLRT------RRTERDAIRE 122
Query: 167 CNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLP-LVSQSKLAFVAIAEATPLVTALS 225
+A + +R L P I+ LL V +++L A E+ P+ A +
Sbjct: 123 ERLRNVMVA---AMKQCRRSRLPALAAPQSIEPLLAGDVGETRLVCHAGEESVPIQQAAA 179
Query: 226 SSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
+R +S L++VGPEG F EV VEA AT V LG RLR ETA IA L ++
Sbjct: 180 DTRQRASALVLVGPEGGFAPPEVEAAVEAEATPVSLGARRLRAETAGIAALHAVI 234
>gi|374297051|ref|YP_005047242.1| RNA methyltransferase, RsmE family [Clostridium clariflavum DSM
19732]
gi|359826545|gb|AEV69318.1| RNA methyltransferase, RsmE family [Clostridium clariflavum DSM
19732]
Length = 247
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 110/254 (43%), Gaps = 31/254 (12%)
Query: 44 IPRFFSQG-----GIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF + ++GD++ H+ KVLRL + + L +G G I+ +
Sbjct: 1 MPRFFINSEDIFDDNINIKGDDYNHIKKVLRLKCGEIITLSDGVGNEYAARIEAFGDGFV 60
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQ 155
+E K + ++ G K + D++++K ELG V P+LTE + +
Sbjct: 61 HTKIVESYKNATEPPVKVTLYQ--GLPKSDKMDFIIQKSVELGISKVVPVLTERTVVKID 118
Query: 156 SRKIGDNGFLSCNFY---------YGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQ 206
++K + N G I + + + N + I +P +
Sbjct: 119 NQKDAQKKWERWNRISQEAAKQSNRGIIPEVELPISFKEAIKQIKNGSLSI---IPYEKE 175
Query: 207 SKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRL 266
SK + I ++ + +S + +GPEG FTE+E+ + + G V LGP L
Sbjct: 176 SKKSLKQILKSNGHMKDIS---------VFIGPEGGFTEQEIEEAISFGINPVTLGPRIL 226
Query: 267 RVETATIALLATLM 280
R ETA IA+L+ LM
Sbjct: 227 RTETAGIAVLSILM 240
>gi|15613913|ref|NP_242216.1| hypothetical protein BH1350 [Bacillus halodurans C-125]
gi|10173966|dbj|BAB05069.1| BH1350 [Bacillus halodurans C-125]
Length = 250
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 105/244 (43%), Gaps = 15/244 (6%)
Query: 44 IPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVAL 103
+P+ V + GD+ H+ KV+R++ D + +G G + I++ + + +V+A
Sbjct: 6 VPKEQMTDTYVTITGDDVKHIIKVMRMTIGDELICSDGHGRTVRCEIEKANDS--EVLAR 63
Query: 104 EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNG 163
L+ V A KG + D++V+K TELGAQ+ P SR I
Sbjct: 64 VIEPLIPNTELPIRVTIAQALPKGDKLDYIVQKGTELGAQAFWPFSA-----SRSIVKWD 118
Query: 164 FLSCNFYYGFIANSAFVYGGQRLHEMV--LNPPMKIDGLLPLVSQSKLAFVAIAEATP-- 219
+ A Q E + + P+ LL +S VA E
Sbjct: 119 EKKGRKKTERLMKIAKEAAEQSYRERIPSIETPLAFSKLLQEISGFTKTIVAYEEEAKEG 178
Query: 220 ----LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIAL 275
L+ + S L+I+GPEG FT +E++ I AG GLGP LR ETA++
Sbjct: 179 RLMTFAACLNELHHGDSLLVIIGPEGGFTTEEIDAIQRAGGAPAGLGPRILRTETASLYA 238
Query: 276 LATL 279
LA +
Sbjct: 239 LAAI 242
>gi|424070337|ref|ZP_17807772.1| hypothetical protein Pav037_0449 [Pseudomonas syringae pv.
avellanae str. ISPaVe037]
gi|408000660|gb|EKG41007.1| hypothetical protein Pav037_0449 [Pseudomonas syringae pv.
avellanae str. ISPaVe037]
Length = 239
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 103/215 (47%), Gaps = 10/215 (4%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR++ D ++LF+G G G + + + + V E + + +
Sbjct: 26 YISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKRVHVQLTESFSGQV--ESGLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TP+++E ++ D ++ IA SA
Sbjct: 84 GLSRGERMDWAIQKATELGVSEITPIVSER--CEVRLKDERAEKRQAHWQQIAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G+ + V++ PM + + +++ L V P+ L+S +S ++GPEG
Sbjct: 142 GRSV-VPVIHAPMPLAEWIKH-TEADLKLVL----HPVAEPLTSHDKPASLAFLIGPEGG 195
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
+ EV + +AG A LGP LR ETA + L+
Sbjct: 196 LNDAEVAQAQDAGFHAARLGPRVLRTETAPVVALS 230
>gi|78044093|ref|YP_359279.1| hypothetical protein CHY_0418 [Carboxydothermus hydrogenoformans
Z-2901]
gi|77996208|gb|ABB15107.1| conserved hypothetical protein TIGR00046 [Carboxydothermus
hydrogenoformans Z-2901]
Length = 248
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 110/247 (44%), Gaps = 20/247 (8%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKG--GLIEGCIQRIDRT 96
+P FF +QG + GD+ H+ KVLR+ +++ L + + L + R D
Sbjct: 1 MPYFFLPPGQTQGDYAYLTGDDAKHVAKVLRIKPGEKLTLQDDQEFRYLCQVIAVRKDLV 60
Query: 97 GLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTP---LLTELH 153
L + LE K+V NV G KG + D++V+K TELG + P + T +
Sbjct: 61 QLKI--LEKKKVV--TRPPVNVTLVQGVPKGDKMDFIVQKATELGVYRIIPVETIRTVVV 116
Query: 154 LQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVA 213
RK D C + +A G R+ E+ P + + L +S + +
Sbjct: 117 FDERKKKDR----CERWQKIAYEAAKQAGVSRVPEIF--PVIDLKALPEFISDALILVPY 170
Query: 214 IAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
E + L + + +I+GPEG F E+ + GA V LGP LR ETA +
Sbjct: 171 EGEEQTSLKQLLNKEAVKNVTVIIGPEGGFDPGEIEYLKSFGAVTVSLGPRILRTETAAL 230
Query: 274 ALLATLM 280
A+L+ ++
Sbjct: 231 AVLSMVL 237
>gi|265755568|ref|ZP_06090189.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|263234174|gb|EEZ19767.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 233
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 101/242 (41%), Gaps = 49/242 (20%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
+E H +VLRLS D + L +GKG + I V E +PQ WN
Sbjct: 18 EEAGHCLRVLRLSIGDEIMLTDGKGCFYKAVISAASGKRCQVKVTE----TIPQEKGWNG 73
Query: 119 F---AAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
+ A T R +W EK TE+G ++ FL+C +
Sbjct: 74 WLHIAMAPTKNMDRTEWFTEKATEIGFDELS-----------------FLNCRY------ 110
Query: 176 NSAFVYGGQRLHEMVLNP-PMKIDGLLPLVS---------------QSKLAFVAIAEATP 219
+ V +R+ +++++ + +P+++ Q +A E
Sbjct: 111 SERKVIKKERIEKILVSAVKQSLKATMPVLNEMTDFNKFVSRDFKGQKFIAHCYEGEKLL 170
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
L L S ++ L+++GPEGDF+E+EV K + AG V LG RLR ETA + TL
Sbjct: 171 LKDILRSGKD---ALVMIGPEGDFSEEEVAKAIAAGFQPVSLGKSRLRTETAALVACHTL 227
Query: 280 ML 281
L
Sbjct: 228 NL 229
>gi|429739297|ref|ZP_19273057.1| RNA methyltransferase, RsmE family [Prevotella saccharolytica
F0055]
gi|429157262|gb|EKX99863.1| RNA methyltransferase, RsmE family [Prevotella saccharolytica
F0055]
Length = 242
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 101/243 (41%), Gaps = 51/243 (20%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWN- 117
DE H +VLRL+ D V L +G+G + + + + +K LPQ WN
Sbjct: 21 DEAQHAVRVLRLTAGDEVFLMDGEGTFYAAELSLVSKNA----CMYHIKETLPQEKTWNG 76
Query: 118 --VFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
A T R +WL+EK TE+G I + FL+C F
Sbjct: 77 RLHLAVAPTKMAERMEWLIEKSTEIG-----------------IDECSFLNCAF------ 113
Query: 176 NSAFVYGGQRLHEMVLNPPMK------IDGLLPLVS--------QSKLAFVAIA----EA 217
+ G+R+ E V+ MK I L P+ S ++ F+A E
Sbjct: 114 SERRQIKGERM-ERVMVSAMKQSRKAWIPVLHPMQSFNDFIHTTRTGRKFIAHCYDEIEK 172
Query: 218 TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
LS + I++GPEGDF+ EV + + G +V LG RLR ETA AL A
Sbjct: 173 KDFFDELSHASCTEEITIMIGPEGDFSIDEVRQAQKNGFESVTLGAARLRTETA--ALYA 230
Query: 278 TLM 280
+M
Sbjct: 231 VMM 233
>gi|422632484|ref|ZP_16697652.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
pisi str. 1704B]
gi|424065634|ref|ZP_17803108.1| hypothetical protein Pav013_0636 [Pseudomonas syringae pv.
avellanae str. ISPaVe013]
gi|330942525|gb|EGH45109.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
pisi str. 1704B]
gi|408003159|gb|EKG43367.1| hypothetical protein Pav013_0636 [Pseudomonas syringae pv.
avellanae str. ISPaVe013]
Length = 239
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 103/215 (47%), Gaps = 10/215 (4%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR++ D ++LF+G G G + + + + V E + + +
Sbjct: 26 YISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKRVHVQLTESFAGQV--ESGLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TP+++E ++ D ++ IA SA
Sbjct: 84 GLSRGERMDWAIQKATELGVSEITPIVSER--CEVRLKDERAEKRQAHWQQIAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G+ + V++ PM + + +++ L V P+ L+S +S ++GPEG
Sbjct: 142 GRSV-VPVIHAPMPLAEWIKH-TEADLKLVL----HPVAEPLTSHDKPASLAFLIGPEGG 195
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
+ EV + +AG A LGP LR ETA + L+
Sbjct: 196 LNDAEVAQAQDAGFHAARLGPRVLRTETAPVVALS 230
>gi|110798700|ref|YP_696706.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium perfringens
ATCC 13124]
gi|110673347|gb|ABG82334.1| RNA methyltransferase, RsmE family [Clostridium perfringens ATCC
13124]
Length = 250
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 102/221 (46%), Gaps = 12/221 (5%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQ 115
+ G++ H+ KVLR+ ++V + N + G ++ +++ + + LE KL + +
Sbjct: 18 ITGEDVKHIYKVLRVKPGEKVVVNNLESEEFLGEVEEVNKQEVSIKILE--KLDVNNESN 75
Query: 116 WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
N+ G K + D +V+KC ELG + P +T+ + + G+ L IA
Sbjct: 76 LNITLFQGMPKAAKMDLIVQKCVELGVSEIIPTITD-RVDVKLKGEFKKLD---RLNKIA 131
Query: 176 NSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT-----PLVTALSSSRNE 230
A + + VL P M +L + Q L + AT +V ++ +
Sbjct: 132 LEACKQSKRTVIPQVLEP-MDFKEVLEKIDQLDLMVIPYENATGYGIRAMVNSIEDKDSI 190
Query: 231 SSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA 271
+ I+VGPEG F E E+ + E GA V LGP LR ETA
Sbjct: 191 KNVGIMVGPEGGFEESEIEALKEKGAHIVTLGPRILRTETA 231
>gi|398881145|ref|ZP_10636158.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM67]
gi|398190480|gb|EJM77703.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM67]
Length = 239
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 106/220 (48%), Gaps = 18/220 (8%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR++ D ++LF+G G + + + VV D + +
Sbjct: 26 YISRVLRMAEGDALQLFDGSGHEFRAKLVEVGKK--RVVVQIDESFAGQIESPLQIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLT---ELHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G +G R DW ++K TELG +TP+ + E+ L+ + D + ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVTEITPIFSDRCEVRLKDER-ADKRLM----HWRQVAISAC 138
Query: 180 VYGGQRLHEMVLNPPMKI-DGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVG 238
G R V++PP+ + D L ++ KL +AE PLV S ++ ++G
Sbjct: 139 EQCG-RSRVPVIHPPVLLADWLKQTEAELKLVLHPVAE--PLV----SHAKPATLAFLIG 191
Query: 239 PEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
PEG ++ EV++ AG A LGP LR ETA + LA
Sbjct: 192 PEGGLSDAEVDQAKAAGFHAARLGPRVLRTETAPVVALAV 231
>gi|419952568|ref|ZP_14468715.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas stutzeri
TS44]
gi|387970613|gb|EIK54891.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas stutzeri
TS44]
Length = 238
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 104/216 (48%), Gaps = 11/216 (5%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +VLRLS+ V+LF+G G G + + + V + P+ + +
Sbjct: 26 YIGRVLRLSSGSAVQLFDGSGQEYLGELVEVGKKQARVELRQQFD-GQPE-SPLQIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TPL++E ++ D ++ IA SA
Sbjct: 84 GLSRGERMDWAIQKATELGVAQITPLISERC--EVRLNDERADKRLAHWRQIAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G+ + M+ +PP +D L + ++ KL P+ L+S + ++GPEG
Sbjct: 142 GRSVVPMI-HPPQLLDDWLQVEAELKLVL------HPVAAPLTSHAQPRTLAFLIGPEGG 194
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
+E+EV + +AG A LGP LR ETA + L+
Sbjct: 195 LSEREVEQAQQAGFQAARLGPRVLRTETAPVVALSV 230
>gi|170701111|ref|ZP_02892086.1| protein of unknown function DUF558 [Burkholderia ambifaria
IOP40-10]
gi|170133972|gb|EDT02325.1| protein of unknown function DUF558 [Burkholderia ambifaria
IOP40-10]
Length = 262
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 104/246 (42%), Gaps = 35/246 (14%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF + + + + D H +VLRL D + LF+G GG + ID+
Sbjct: 17 VPRFFVEAALRADATLTLPADVARH-AQVLRLQPGDTLALFDGSGGQYRARLVEIDKRN- 74
Query: 99 DVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
AL ++ P + + V A G G + DW++EK ELG +V PL T +
Sbjct: 75 ---ALAQIEAFDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLTTARGV-V 130
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMV----------LNPPMKIDGLLPLV-- 204
+ G+ + G + S G R+ ++ P M DG L L+
Sbjct: 131 KLSGERADKRVAHWRGVVRASCEQCGRNRVPDVAPVRGFGAWLDTLPAMPADGELRLLLS 190
Query: 205 SQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPH 264
++ + F ++ +A P +++GPEG + E N G TA+ LGP
Sbjct: 191 PRASIPFASLPDAPPAAAVT----------LLIGPEGGLSPDEENAARAHGFTALSLGPR 240
Query: 265 RLRVET 270
LR ET
Sbjct: 241 VLRTET 246
>gi|289625569|ref|ZP_06458523.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
aesculi str. NCPPB 3681]
gi|289647472|ref|ZP_06478815.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
aesculi str. 2250]
gi|422580920|ref|ZP_16656064.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|298160443|gb|EFI01467.1| predicted methyltransferase [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
gi|330865771|gb|EGH00480.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
aesculi str. 0893_23]
Length = 239
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 113/238 (47%), Gaps = 14/238 (5%)
Query: 44 IPRFFSQGGIVRVEGD----EFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
+ RFF++ + E + + ++++VLR++ D ++LF+G G G + + + +
Sbjct: 3 LSRFFTEAPLSLGEHELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKRVH 62
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
V E + + + G +G R DW ++K TELG +TP+++E ++
Sbjct: 63 VQLTESFAGQV--ESGLRIHLGQGLSRGERMDWAIQKATELGVGEITPIVSER--CEVRL 118
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
D ++ IA SA G+ + V++ PM + + +++ L V P
Sbjct: 119 KDERAEKRQAHWQQIAISACEQCGRSV-VPVIHAPMPLAEWIKH-TEADLKLVL----HP 172
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
+ L+S +S ++GPEG + EV++ AG A LGP LR ETA + L+
Sbjct: 173 VAEPLTSHDKPASLAFLIGPEGGLNDAEVDQAQAAGFHAARLGPRVLRTETAPVVALS 230
>gi|188585812|ref|YP_001917357.1| hypothetical protein Nther_1186 [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179350499|gb|ACB84769.1| protein of unknown function DUF558 [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 240
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 111/232 (47%), Gaps = 24/232 (10%)
Query: 64 MTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE-DLKLVLPQHTQWNVFAAF 122
MT+VLRL DRV L +GKGG C I+R G + E + L+ + + A
Sbjct: 1 MTRVLRLKIGDRVILLDGKGG---ACFSFINRLGEGQIEFELEEPLIDNKEAPIRITLAQ 57
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTE------LHLQSRKIGDNGFLSCNFYYGFIAN 176
+K +++++K TELGA PL+++ L+ +K+ + + N
Sbjct: 58 SLIKKDNFEFVLQKGTELGATEFYPLISQRTEVNLLNKSDKKVSKK----LTRWREIVKN 113
Query: 177 SAFVYGGQRLHEMVLNPPMKIDGLLPLVSQ------SKLAFVAIA-EATPLVTALSSSRN 229
+A QR +++ P+ + L ++ S+L + E TPL L +
Sbjct: 114 AA--EQCQRQVLPLIHYPVNFEKYLKNNNENSNNNGSRLKIMCHEQENTPLKKVLKTIET 171
Query: 230 E-SSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
SS +I++GPEG F+ EV+ E G ++V +GP LR ETA I ++ ++
Sbjct: 172 PPSSAIILIGPEGGFSHNEVDLAREQGFSSVSMGPRILRAETAGIVAVSAIL 223
>gi|88705487|ref|ZP_01103198.1| conserved hypothetical protein [Congregibacter litoralis KT71]
gi|88700577|gb|EAQ97685.1| conserved hypothetical protein [Congregibacter litoralis KT71]
Length = 245
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 109/242 (45%), Gaps = 20/242 (8%)
Query: 45 PRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PRFF S+G + +E + H+ K LR+ D + LF+G G G I +D++ +
Sbjct: 4 PRFFTAQTLSEGSTLTLEKEPSRHIAKALRMRAGDSLCLFDGSGIEAHGEISDLDKSQVS 63
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
V+ + + + + +G R D +V+K TELG + P+++E ++
Sbjct: 64 VIVKSIQQPT--RESPLDTVLIIALSRGDRMDTVVQKATELGVTEIWPMISER--TGVRL 119
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS----KLAFVAIA 215
+ ++ IA SA G R + P + L ++ +L A
Sbjct: 120 DETRLARKRQHWERIAISACEQCG-RNRLPTVETPTSFEETLQRAAKGDDSLRLILHTSA 178
Query: 216 EATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIAL 275
+PL T S ++VGPEG F+++EV ++ G A+ +GP LR ETA +
Sbjct: 179 HPSPLPTHCKSL------TLLVGPEGGFSDEEVTAALDQGFCALQMGPRILRTETAPLVG 232
Query: 276 LA 277
LA
Sbjct: 233 LA 234
>gi|292493337|ref|YP_003528776.1| hypothetical protein Nhal_3352 [Nitrosococcus halophilus Nc4]
gi|291581932|gb|ADE16389.1| protein of unknown function DUF558 [Nitrosococcus halophilus Nc4]
Length = 243
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 108/246 (43%), Gaps = 18/246 (7%)
Query: 44 IPRFFSQ-----GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PR +S G V ++ H+ +VLRL + LF+G+G ++ +++
Sbjct: 3 VPRIYSSLPLSIGSSVVLDERALQHVVRVLRLRAGAELWLFDGRGTEYRAVLETVEKRSA 62
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQ 155
+ LE ++ + + ++ G +G R D+ ++K ELG + PL TE +HL
Sbjct: 63 EARILERMERNV--ESPLDIILGQGISRGERMDYALQKAVELGVSGIVPLFTERSAVHLS 120
Query: 156 SRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIA 215
++ + G + ++ G R + ++ P + L +
Sbjct: 121 GERLEKR----LRHWRGVVISACEQCG--RNYTPGVDTPRSLAAFLGDCHAGLAVLLDPR 174
Query: 216 EATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIAL 275
PL T S ++++GPEG +E EV + +AG V LGP LR ETAT+A
Sbjct: 175 SHRPLKTLPSPLGKRL--ILLIGPEGGLSEVEVKEAQQAGFIDVSLGPRVLRTETATVAA 232
Query: 276 LATLML 281
L L L
Sbjct: 233 LTALQL 238
>gi|365877122|ref|ZP_09416627.1| Ribosomal RNA small subunit methyltransferase E [Elizabethkingia
anophelis Ag1]
gi|442587954|ref|ZP_21006768.1| Ribosomal RNA small subunit methyltransferase E [Elizabethkingia
anophelis R26]
gi|365754982|gb|EHM96916.1| Ribosomal RNA small subunit methyltransferase E [Elizabethkingia
anophelis Ag1]
gi|442562453|gb|ELR79674.1| Ribosomal RNA small subunit methyltransferase E [Elizabethkingia
anophelis R26]
Length = 231
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 100/227 (44%), Gaps = 18/227 (7%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQ-RIDRTGLDVVALEDLKLVLPQ 112
V++ D+ H+ KVLR+ + + + NG+G L G + + ++V L+ P
Sbjct: 13 VQINEDDQQHIAKVLRMREGEEISVTNGEGALAHGQLYFEGKKVLIEVTELQTETPDFPH 72
Query: 113 HTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYG 172
H A T R ++ +EK TE+G ++ LLTE RK N
Sbjct: 73 HLH---IAIAPTKNIDRTEFFIEKATEMGVTEISFLLTEK--TERK---------NLNID 118
Query: 173 FIANSAFVYGGQ--RLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNE 230
I Q R + +N +KI L V+ K +VA + ++ + +
Sbjct: 119 KIRKQVIAASKQSLRFYFPKVNDLIKISDFLQKVNTEK-TYVAHCHSELERQDITRLQIQ 177
Query: 231 SSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
++GPEGDF+ KE+ + E AV LGP RLR ETA + + A
Sbjct: 178 KDICFLIGPEGDFSLKEIQMLKEKQIKAVSLGPQRLRTETAGVFVAA 224
>gi|406831351|ref|ZP_11090945.1| 16S ribosomal RNA methyltransferase RsmE [Schlesneria paludicola
DSM 18645]
Length = 234
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 102/232 (43%), Gaps = 19/232 (8%)
Query: 46 RFF----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVV 101
RF+ S+ G VR+ E H+ VLR D+VELF+G+G I + + D+
Sbjct: 4 RFYCSDLSELGSVRLVETEAHHLVHVLRHDVGDQVELFDGRGLAAICRITAVRKRDADLE 63
Query: 102 ALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGD 161
L + +P + A G KG R +WL+EK TELG V PL T +R + D
Sbjct: 64 ILTSRRDPVPLTL---LTLATGVPKGDRFEWLIEKATELGVARVIPLTT-----TRSVVD 115
Query: 162 NGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLV 221
+ + +A GQ H M + P + L A + IA
Sbjct: 116 PRDSKLDKLRQTVI-TACKQSGQN-HLMEITPVVAWTEFLR--DHDPAAELLIAHPRGAD 171
Query: 222 TALSSSRNESSGLII---VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
L S +SS I +GPEG F++ EV V GA + LGP LR+ET
Sbjct: 172 VGLVSEDAKSSSRAIIAAIGPEGGFSDDEVQSAVTHGAKIIRLGPRILRIET 223
>gi|399010694|ref|ZP_10713056.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM17]
gi|398106185|gb|EJL96233.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM17]
Length = 239
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 100/216 (46%), Gaps = 10/216 (4%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +VLR++ D ++LF+G G G + + + VV D + +
Sbjct: 26 YIGRVLRMAEGDALQLFDGSGNEFRGTLLEVGKK--RVVVRLDESFAGQVESPLQIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TP+ +E ++ D ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVNEITPIFSERC--EVRLKDERADKRLAHWRQVAVSACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G R V++PP+ + + +Q+ L V A PLV S ++ ++GPEG
Sbjct: 142 G-RSRVPVIHPPVLLADWIKQ-TQADLKLVLHPVAEPLV----SHAKPATLAFLIGPEGG 195
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
++ EV++ AG LGP LR ETA + LA
Sbjct: 196 LSDAEVDQAQGAGFLPARLGPRVLRTETAPVVALAV 231
>gi|399019608|ref|ZP_10721754.1| RNA methyltransferase, RsmE family [Herbaspirillum sp. CF444]
gi|398097499|gb|EJL87803.1| RNA methyltransferase, RsmE family [Herbaspirillum sp. CF444]
Length = 241
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 112/247 (45%), Gaps = 24/247 (9%)
Query: 44 IPRFFSQG----GIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
+PRF+ G D+ H +V+R+ + + LFNG+GG + ++++ +
Sbjct: 1 MPRFYCPDPLAIGTTLALPDQVAHHVQVIRMQVGNPITLFNGEGGEYTAVVTQMEKKRVH 60
Query: 100 VVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHL 154
++K P+ + + V A + + DW++EK ELG ++ PL ++ + L
Sbjct: 61 A----EVKTFSPREAELSYAVTLAQALPEAAKMDWIIEKAVELGVTAIQPLASQRCVVRL 116
Query: 155 QSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI 214
S + + + G I +A G RL + L+P + VSQS L +
Sbjct: 117 NSERAEKKQ----SHWQGIIHAAAEQSGRNRLAQ--LSPLTDFNSW---VSQSDLHKRIL 167
Query: 215 AEATPLVTALSSSRNESSGLI--IVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
+ +R+ + + +VGPEG FT+ E N + GA + +GP LR ETA
Sbjct: 168 LSPRGEQSLSDWARHHPAQALSLMVGPEGGFTDAEENLACDHGALMLSMGPRVLRTETAG 227
Query: 273 IALLATL 279
+ LA +
Sbjct: 228 LGALAAI 234
>gi|29349736|ref|NP_813239.1| 16S ribosomal RNA methyltransferase RsmE [Bacteroides
thetaiotaomicron VPI-5482]
gi|298384009|ref|ZP_06993570.1| RNA methyltransferase, RsmE family [Bacteroides sp. 1_1_14]
gi|383120675|ref|ZP_09941400.1| RsmE family RNA methyltransferase [Bacteroides sp. 1_1_6]
gi|29341646|gb|AAO79433.1| conserved hypothetical protein [Bacteroides thetaiotaomicron
VPI-5482]
gi|251840280|gb|EES68362.1| RsmE family RNA methyltransferase [Bacteroides sp. 1_1_6]
gi|298263613|gb|EFI06476.1| RNA methyltransferase, RsmE family [Bacteroides sp. 1_1_14]
Length = 232
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 99/242 (40%), Gaps = 49/242 (20%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQW-- 116
+E H T+VLRL D + L +GKG + I + L +K + Q W
Sbjct: 18 EEAQHCTRVLRLGIGDEITLTDGKGHFYKAEIT----VATNKRCLVAIKETIFQEPLWPC 73
Query: 117 NVFAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
++ A K R +WL EK TE+G +T FL+C F
Sbjct: 74 HLHIAMAPTKNMDRNEWLAEKATEIGFDELT-----------------FLNCRF------ 110
Query: 176 NSAFVYGGQRLHEMV--------------LNPPMKIDGLL--PLVSQSKLAFVAIAEATP 219
+ V +R+ +++ LN D + Q +A E
Sbjct: 111 SERKVIKTERIEKILISAIKQSLKARLPKLNEMTDFDKFIAQEFQGQKFIAHCYEGEKPQ 170
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
L L + + L+++GPEGDF+E+EV K +E G T + LG RLR ETA + T+
Sbjct: 171 LKNVLKAGED---ALVLIGPEGDFSEEEVKKAIECGFTPISLGKSRLRTETAALVACHTM 227
Query: 280 ML 281
L
Sbjct: 228 NL 229
>gi|407688742|ref|YP_006803915.1| hypothetical protein AMBAS45_14855 [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|407292122|gb|AFT96434.1| hypothetical protein AMBAS45_14855 [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 242
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 17/243 (6%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
IPR + I + D H+ VLR+ N + LFNG G I + R +
Sbjct: 3 IPRVYYPNPIPLEQEFELTEDAGHHIATVLRIKPNRPIVLFNGDGNEYSAQIISVQRKKV 62
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
V A D L L + + ++ G KG R D +++K ELG +TP++TE + K
Sbjct: 63 TVEA--DACLSLAKESPLHLHLGQGVSKGDRMDTVLQKSVELGVSEITPVITERC--TVK 118
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLL-PLVSQSKLAFVAIAEA 217
+ ++ + + I A G+ + LN P+ ++ L + ++L AE
Sbjct: 119 LDESRWEKKIQQWQKIIIGACEQSGRNIIP-ALNAPVSLNQWLSSSTNTTRLVLAPGAEQ 177
Query: 218 TPLVTALSSSRNESSGL-IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALL 276
+ L+ + G +++GPEG +E E+++ E G +V LGP LR ETA I L
Sbjct: 178 S-----LARQPYNAQGFRLLIGPEGGLSETEIHQANENGYQSVSLGPRILRTETAAITSL 232
Query: 277 ATL 279
+ L
Sbjct: 233 SIL 235
>gi|410028950|ref|ZP_11278786.1| 16S ribosomal RNA methyltransferase RsmE [Marinilabilia sp. AK2]
Length = 238
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 101/243 (41%), Gaps = 24/243 (9%)
Query: 49 SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKL 108
+Q +E +E H+ KVLR D+V +G G L I + V D +
Sbjct: 9 TQEDNFYLEQEESKHLIKVLRKQAGDKVNFTDGNGCLFSCTILEPNPKKTRVQI--DQRH 66
Query: 109 VLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTEL----HLQSRKIGDNGF 164
P + A T R +W+VEK TE+G +T +++E HL+ ++
Sbjct: 67 FAPPDDYYIHLAISPTKNPDRMEWMVEKATEIGVHEITFMVSEHSERPHLKMDRLEKKVI 126
Query: 165 LSCNFYYGFIANSAFVYGGQRLHEMV--LNPPMKIDGLLPLVS-QSKLAFVAIAEATPLV 221
+C Q L LNP + GL+ + F+A +
Sbjct: 127 AACK---------------QSLKTRFPKLNPIRSMQGLVQDKTFDDYQRFIAYVDKENDR 171
Query: 222 TALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
+ + + +I++GPEGDF+E+E+ + LG RLR ETA IA + TL L
Sbjct: 172 HLFDKAEPDRAYIILIGPEGDFSEQELQAAFDQHFLPCSLGKSRLRSETAGIAAVHTLQL 231
Query: 282 CSD 284
++
Sbjct: 232 INN 234
>gi|167920517|ref|ZP_02507608.1| hypothetical protein BpseBC_18364 [Burkholderia pseudomallei
BCC215]
Length = 249
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 101/240 (42%), Gaps = 21/240 (8%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF + + + D H VLRL D + LF+G GG + ID+ G
Sbjct: 19 VPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKRG- 76
Query: 99 DVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
AL + P + + V A G G + DW++EK ELG +V PL T +
Sbjct: 77 ---ALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGV-V 132
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMK-----IDGLLPLVSQSKLAF 211
R G+ + + G + S G RL E+ P++ +D L + +L
Sbjct: 133 RLSGERADKRVSHWRGVVRASCEQCGRNRLPEIA---PVRGFDAWLDALPATPADGELRL 189
Query: 212 VAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA 271
+ A+ +L ++ +++GPEG E G A+ LGP LR ETA
Sbjct: 190 LLSPRASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAALSLGPRVLRTETA 249
>gi|288555682|ref|YP_003427617.1| RNA methyltransferase RsmE [Bacillus pseudofirmus OF4]
gi|288546842|gb|ADC50725.1| RNA methyltransferase, RsmE [Bacillus pseudofirmus OF4]
Length = 250
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 103/239 (43%), Gaps = 19/239 (7%)
Query: 51 GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDL--KL 108
G IV + GD+ H+ +V+R+ + + + N G + ++++ + + LE+L K
Sbjct: 13 GSIVTITGDDVKHIARVMRMQEGEEIIVSNNAGRTVLAKLKKLSESDIQAEVLEELDPKT 72
Query: 109 VLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCN 168
LP V A G KG + + + +K TELG P SR I
Sbjct: 73 ELP----IKVTVAQGLPKGDKLELITQKGTELGVSCFQPFQA-----SRSIVKWDMKKAK 123
Query: 169 FYYGFIANSAFVYGGQRLHEMV--LNPPMKIDGLLPLVSQSKLAFVA------IAEATPL 220
+ A Q E++ + LL + VA EA+ L
Sbjct: 124 KKVERLEKIAKEAAEQSYREIIPTIKEAASFTQLLETIESYTHTIVAYEESAKTGEASNL 183
Query: 221 VTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
L+ ++ S LI++GPEG TE+EV+ + GA GLGP +R ETA + ++A +
Sbjct: 184 HNVLNQVKSGDSVLIVIGPEGGLTEEEVSALEGKGAVLCGLGPRIIRTETAPLYVMAAI 242
>gi|399024431|ref|ZP_10726468.1| RNA methyltransferase, RsmE family [Chryseobacterium sp. CF314]
gi|398080421|gb|EJL71235.1| RNA methyltransferase, RsmE family [Chryseobacterium sp. CF314]
Length = 229
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 98/227 (43%), Gaps = 18/227 (7%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQ-RIDRTGLDVVALEDLKLVLPQ 112
V + +E H+ KVLR+ + + + +GKG L G + + G+DV A+ K P
Sbjct: 13 VVINDEEQQHILKVLRMKDGEEIHVTDGKGSLASGTLMIEGKKAGIDVSAI---KTDFPD 69
Query: 113 HTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYG 172
A T R ++ VEK E+G +T +LTE RK N
Sbjct: 70 FEPKLHIAIAPTKNIDRIEFFVEKAVEMGISEITFVLTEK--TERK---------NINTD 118
Query: 173 FIANSAFVYGGQ--RLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNE 230
I + Q R H ++N +K L ++ K FVA L +
Sbjct: 119 KIRKQSIAASKQSLRFHFPIINDVVKFSDFLK-NTEIKNTFVAHCNENLERIELKNISKT 177
Query: 231 SSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
S ++GPEGDF++KE+ + + AV LG RLR ETA I + A
Sbjct: 178 GSYTFLIGPEGDFSDKEIQYLTDLKIRAVSLGNQRLRTETAGIFVAA 224
>gi|325273070|ref|ZP_08139378.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas sp. TJI-51]
gi|324101804|gb|EGB99342.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas sp. TJI-51]
Length = 239
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 109/238 (45%), Gaps = 14/238 (5%)
Query: 44 IPRFFSQGGIVRVEGD----EFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
+ RFF + E D + ++ +VLR++ D V+LF+G G G + + + +
Sbjct: 3 LSRFFIDAPLSLGEHDLPEAQAHYVGRVLRMAPGDAVQLFDGSGQEYRGHLLEVGKKTVR 62
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
V D + ++ G +G R DW ++K TELGA ++TP+++E ++
Sbjct: 63 VSL--DQAFAGQADSPLHIHLGQGLSRGERMDWAIQKATELGANAITPIISER--CEVRL 118
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
D ++ +A SA G R +NPP + L + ++L V P
Sbjct: 119 KDERADKRLAHWRQVAISACEQCG-RSTLPAINPPTTLAEWLS-STHAELKLVL----HP 172
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
+ L+S ++ ++GPEG + EV + AG A LGP LR ETA + L+
Sbjct: 173 VAEPLTSHARPATLAFLIGPEGGLGDAEVEQAQRAGFQAARLGPRVLRTETAPVVALS 230
>gi|406597805|ref|YP_006748935.1| hypothetical protein MASE_14385 [Alteromonas macleodii ATCC 27126]
gi|406375126|gb|AFS38381.1| hypothetical protein MASE_14385 [Alteromonas macleodii ATCC 27126]
Length = 242
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 104/219 (47%), Gaps = 12/219 (5%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
H+ VLR+ N + LFNG G I + R + V A D L L + + ++
Sbjct: 27 HIATVLRIKPNRPIVLFNGDGNEYSAQIISVQRKKVTVEA--DACLSLAKESPLHLHLGQ 84
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G KG R D +++K ELG +TP++TE + K+ ++ + + I A
Sbjct: 85 GVSKGDRMDTVLQKSVELGVSEITPVITERC--TVKLDESRWEKKIQQWQKIIIGACEQS 142
Query: 183 GQRLHEMVLNPPMKIDGLL-PLVSQSKLAFVAIAEATPLVTALSSSRNESSGL-IIVGPE 240
G+ + LN P+ ++ L + ++L AE + L+ + G +++GPE
Sbjct: 143 GRNIIP-ALNAPVSLNQWLSSSTNTTRLVLAPGAEQS-----LARQPYNAQGFRLLIGPE 196
Query: 241 GDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
G +E EV++ E G +V LGP LR ETA I L+ L
Sbjct: 197 GGLSETEVHQANENGYQSVSLGPRILRTETAAITSLSIL 235
>gi|372268101|ref|ZP_09504149.1| hypothetical protein AlS89_09380 [Alteromonas sp. S89]
Length = 246
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 112/245 (45%), Gaps = 17/245 (6%)
Query: 44 IPRFFSQ---GGIVRVEGDEFW--HMTKVLRLSTNDRVELFNGKGGLIEG-CIQRIDRTG 97
IPR FS G ++ DE H+ KVLRL + LF+G GG ++ +
Sbjct: 3 IPRIFSSQPLAGQAELQLDEAASRHLVKVLRLGPGRPLILFDGSGGEYAAELVEAGKKAR 62
Query: 98 LDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
+ + A + + + + A G +G R DW+++K TELG + PL TE + +
Sbjct: 63 VKIGAFSEGN----RQSPLAITLAIGISRGDRFDWVIQKATELGVAQIQPLFTE-RCEVK 117
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS---KLAFVAI 214
GD + IA SA + L +L P +K+ LL +S KL
Sbjct: 118 LSGDR-LQKKLGQWQQIAISACEQCARNLVPEILAP-LKLPQLLDQAQESDALKLVLHHR 175
Query: 215 AEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274
AT S R ++ L++VGPEG + +E+ ++ G + LGP LR ETA +A
Sbjct: 176 TNATLAELEQQSGRTHAA-LLLVGPEGGLSAEEIALALQQGFHPLRLGPRVLRTETAPVA 234
Query: 275 LLATL 279
L+ L
Sbjct: 235 ALSVL 239
>gi|422319497|ref|ZP_16400572.1| hypothetical protein HMPREF0005_02771 [Achromobacter xylosoxidans
C54]
gi|317405816|gb|EFV86104.1| hypothetical protein HMPREF0005_02771 [Achromobacter xylosoxidans
C54]
Length = 243
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 110/245 (44%), Gaps = 23/245 (9%)
Query: 45 PRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PRFF S G + + H +VLRL + + LFNG+GG ++ + G
Sbjct: 4 PRFFCDAPLSAGARIALPEALAHHAIRVLRLRAGEPMVLFNGQGGEYPAVLEIEGKAGFA 63
Query: 100 VVALEDLKLVLPQHTQW--NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHL 154
+ D P+ + + G G + DW+VEK ELGA V P+ + L L
Sbjct: 64 QLGAFD-----PREAELAGRITLVQGLPAGDKMDWVVEKAVELGAAHVCPIAAQRSVLQL 118
Query: 155 QSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKI-DGLLPLVSQSKLAFVA 213
++ ++ IA SA G R M ++ PM + D L +L
Sbjct: 119 AGPRLEKR-----VAHWQRIAQSAAEQCG-RNRLMAVDAPMALADWLAQPADGLRLLCHP 172
Query: 214 IAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
A+A L L ++ S ++VGPEG +++KE+ EAG AV GP LR ETA +
Sbjct: 173 DADAD-LAGRLGATPGLQSLTLLVGPEGGWSDKELALAREAGVQAVRFGPRVLRTETAGL 231
Query: 274 ALLAT 278
AL++
Sbjct: 232 ALISA 236
>gi|426411984|ref|YP_007032083.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas sp. UW4]
gi|426270201|gb|AFY22278.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas sp. UW4]
Length = 239
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 103/219 (47%), Gaps = 16/219 (7%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR++ D ++LF+G G + + + VV D + +
Sbjct: 26 YISRVLRMAEGDALQLFDGSGQEFRARLVEVGKK--RVVVQIDESFAGQIESPLQIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G +G R DW ++K TELG +TP+ TE + L+ + D L ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVSEITPIFTERCEVRLKDER-ADKRLL----HWRQVAISAC 138
Query: 180 VYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGP 239
G R V++PP+ + L +Q++L V A PLV S + ++GP
Sbjct: 139 EQCG-RSRVPVIHPPLLLADWLKQ-TQAELKLVLHPVAEPLV----SHAKPGTLAFLIGP 192
Query: 240 EGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
EG ++ EV++ A + LGP LR ETA + LA
Sbjct: 193 EGGLSDAEVDQAKSADFHSARLGPRVLRTETAPVVALAV 231
>gi|398886260|ref|ZP_10641147.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM60]
gi|398190375|gb|EJM77605.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM60]
Length = 239
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 106/220 (48%), Gaps = 18/220 (8%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR++ D ++LF+G G + + + VV D + +
Sbjct: 26 YISRVLRMAEGDALQLFDGSGHEFRAKLVEVGKK--RVVVQIDESFAGQIESPLQIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLT---ELHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G +G R DW ++K TELG +TP+ + E+ L+ + D + ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVTEITPIFSDRCEVRLKDER-ADKRLM----HWRQVAISAC 138
Query: 180 VYGGQRLHEMVLNPPMKI-DGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVG 238
G R V++PP+ + D L ++ KL +AE PLV S ++ ++G
Sbjct: 139 EQCG-RSRVPVIHPPVLLADWLKQTEAELKLVLHPVAE--PLV----SHAKPATLAFLIG 191
Query: 239 PEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
PEG ++ EV++ AG A LGP LR ETA + LA
Sbjct: 192 PEGGLSDVEVDQAKAAGFHAARLGPRVLRTETAPVVALAV 231
>gi|424915370|ref|ZP_18338734.1| RNA methyltransferase, RsmE family [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|392851546|gb|EJB04067.1| RNA methyltransferase, RsmE family [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 245
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 103/221 (46%), Gaps = 12/221 (5%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
S G + D+F ++ VLR+ V LFNG+ G + + R + + A+E+ +
Sbjct: 16 LSNGATLEANADQFNYLANVLRMEEGGEVLLFNGRDGEWKATLSFPTRKRIQLTAIEETR 75
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
PQ ++ F LK GR D+LV+K E+GA + P++T+ H+Q KI + L
Sbjct: 76 ---PQPAPCDLHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQ-HVQG-KITNLDKLRA 130
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSS 227
N A V G + E P +D L + ++ + +A + S+
Sbjct: 131 NVVEA--AEQCGVLGIPDVAE----PVRLLDLLDRWPKERRIIYCDEGDAGQNPLPVLSA 184
Query: 228 RNESSGLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLR 267
E ++VGPEG F+E+E ++ TA+ LGP LR
Sbjct: 185 IRERHLALLVGPEGGFSEEERARLRSLDFVTAIPLGPRILR 225
>gi|338740634|ref|YP_004677596.1| hypothetical protein HYPMC_3820 [Hyphomicrobium sp. MC1]
gi|337761197|emb|CCB67030.1| conserved protein of unknown function [Hyphomicrobium sp. MC1]
Length = 248
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 113/235 (48%), Gaps = 20/235 (8%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
+ GG V +E + ++T VLRL R+ +FNG+ G + + G + + +
Sbjct: 17 LAPGGRVELEPAQAHYLTAVLRLKLGARLLVFNGRHGEWVASLSETHKRGGALTVDDQAR 76
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
PQ + +V F LK R D++V+K TE+G + P++TE + R ++
Sbjct: 77 ---PQESGPDVDYLFAPLKRSRLDYMVQKATEMGVARLRPVITERTIAER-------VNS 126
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS-KLAFV--AIAEATPLVTAL 224
+ +A G R+ E + P+++D +L S ++ F E P+ T
Sbjct: 127 ERMQANVIEAAEQCGVLRVPE--VQTPVRLDDVLDAWDASRRIVFCDEQDQENDPIATL- 183
Query: 225 SSSRNESSGL-IIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLRVETATIALLA 277
+ E L ++VGPEG F+ +E ++V T++ LGP +R +TA +A+LA
Sbjct: 184 --QKLEPGPLAVLVGPEGGFSPRERERLVSKTFVTSLSLGPRIMRADTAAVAVLA 236
>gi|86356450|ref|YP_468342.1| 16S ribosomal RNA methyltransferase RsmE [Rhizobium etli CFN 42]
gi|86280552|gb|ABC89615.1| hypothetical conserved protein [Rhizobium etli CFN 42]
Length = 245
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 107/222 (48%), Gaps = 14/222 (6%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
S G V D+F ++ VLR+ + LFNG+ G + + R + + A+E +
Sbjct: 16 LSAGAAVEANADQFNYLANVLRMEDGAEILLFNGRDGEWKATLSFPTRKRILLTAIEATR 75
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
PQ ++ F LK GR D+LV+K E+GA + P++T+ H+Q KI + L
Sbjct: 76 ---PQPAPCDLHYLFAPLKVGRLDYLVQKAVEMGAGRLQPVMTQ-HVQG-KITNLDKLRA 130
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLP-LVSQSKLAFVAIAEATPLVTALSS 226
N + +A G + E+ P+K+ LL S+ ++ + +A + +
Sbjct: 131 N-----VVEAAEQCGVLAIPEVA--EPVKLSDLLDRWPSERRIIYCDEGDAGQNPLPVLA 183
Query: 227 SRNESSGLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLR 267
+ E ++VGPEG F+E+E ++ TA+ LGP LR
Sbjct: 184 AIQERHLALLVGPEGGFSEEERARLRSLDFVTAIPLGPRILR 225
>gi|422618950|ref|ZP_16687644.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
japonica str. M301072]
gi|440720858|ref|ZP_20901270.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae
BRIP34876]
gi|440727687|ref|ZP_20907913.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae
BRIP34881]
gi|330899324|gb|EGH30743.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
japonica str. M301072]
gi|440363092|gb|ELQ00262.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae
BRIP34881]
gi|440365228|gb|ELQ02342.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae
BRIP34876]
Length = 239
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 100/215 (46%), Gaps = 10/215 (4%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR++ D ++LF+G G G + + + + V E + + +
Sbjct: 26 YISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKRVHVQLTESFAGQV--ESGLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TP+++E ++ D ++ IA SA
Sbjct: 84 GLSRGERMDWAIQKATELGVSEITPIVSER--CEVRLKDERAEKRQAHWQQIAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G+ + ++ P + + + KL +AE L+S +S ++GPEG
Sbjct: 142 GRSVVPVIHAPIPLAEWIKHTEADLKLVLHPVAEP------LTSHDKPASLAFLIGPEGG 195
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
+ EV + +AG A LGP LR ETA + L+
Sbjct: 196 LNDAEVAQAQDAGFHAARLGPRVLRTETAPVVALS 230
>gi|302188983|ref|ZP_07265656.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
syringae 642]
Length = 239
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 102/215 (47%), Gaps = 10/215 (4%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR++ D ++LF+G G G + + + + V E + + +
Sbjct: 26 YISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKRVHVQLNESFAGQV--ESVLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TP+++E ++ D ++ IA SA
Sbjct: 84 GLSRGERMDWAIQKATELGVSEITPIVSERC--EVRLKDERAEKRQAHWQQIAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G+ + V++ PM L + Q++ + P+ L+S +S ++GPEG
Sbjct: 142 GRSV-VPVIHAPMP---LTEWIKQTEADLKLVLH--PVAEPLTSHDKPASLAFLIGPEGG 195
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
+ EV + +AG A LGP LR ETA + L+
Sbjct: 196 LNDAEVAQAQDAGFHAARLGPRVLRTETAPVVALS 230
>gi|84499775|ref|ZP_00998063.1| hypothetical protein OB2597_07590 [Oceanicola batsensis HTCC2597]
gi|84392919|gb|EAQ05130.1| hypothetical protein OB2597_07590 [Oceanicola batsensis HTCC2597]
Length = 241
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 105/230 (45%), Gaps = 14/230 (6%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
+G V + D+ ++ V+R+ D V LFNG+ G + G LE +
Sbjct: 14 LGEGQTVPLARDQAHYLFGVMRMGVGDAVALFNGRAGEWRA---EVVEAGKRAGTLECVG 70
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
PQ +++ AF +K R D++VEK TE+GA+ + P+ T+ R D C
Sbjct: 71 QSAPQMDPPDLWLAFAPIKKARTDFIVEKATEMGARRILPVQTDFTNSERVRIDRLQAHC 130
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSS 227
+A GG + E+ P+K+ LL + + + EA A +
Sbjct: 131 -------VEAAEQCGGTFVPEVA--EPVKLGTLLSGWPEGR-QLMFCDEALAGGPAALPT 180
Query: 228 RNESSGLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLRVETATIALL 276
R+++ I++GPEG F+E E ++ A V LGP LR +TA +A L
Sbjct: 181 RSDAPWAILIGPEGGFSEAERARLRGMDQAHPVALGPRVLRADTAAVAAL 230
>gi|167825846|ref|ZP_02457317.1| hypothetical protein Bpseu9_19397 [Burkholderia pseudomallei 9]
Length = 251
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 101/240 (42%), Gaps = 21/240 (8%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF + + + D H VLRL D + LF+G GG + ID+ G
Sbjct: 19 VPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKRG- 76
Query: 99 DVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
AL + P + + V A G G + DW++EK ELG +V PL T +
Sbjct: 77 ---ALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGV-V 132
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMK-----IDGLLPLVSQSKLAF 211
R G+ + + G + S G RL E+ P++ +D L + +L
Sbjct: 133 RLSGERADKRVSHWRGVVRASCEQCGRNRLPEIA---PVRGFDAWLDALPATPADGELRL 189
Query: 212 VAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA 271
+ A+ +L ++ +++GPEG E G A+ LGP LR ETA
Sbjct: 190 LLSPRASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAALSLGPRVLRTETA 249
>gi|345879212|ref|ZP_08830882.1| hypothetical protein Rifp1Sym_du00030 [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|344223763|gb|EGV50196.1| hypothetical protein Rifp1Sym_du00030 [endosymbiont of Riftia
pachyptila (vent Ph05)]
Length = 244
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 113/247 (45%), Gaps = 27/247 (10%)
Query: 45 PRFFSQ-----GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PR F+ G +++E + H+ KVLRL + ++ LFNG G + DR ++
Sbjct: 4 PRIFTSQPLQTGHHIQLEAEPSHHLLKVLRLRSGAQLRLFNGDGREFSASLISSDRNRVE 63
Query: 100 V----VALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---L 152
V ++ K LP + A G +G R D+ ++K ELG ++ PL+TE +
Sbjct: 64 VELHQCLRKEAKDSLP------ITLAIGISRGERMDFALQKSVELGVSAIVPLVTERCVV 117
Query: 153 HLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFV 212
L R+ ++ I SA G R L P + D +L + + + +
Sbjct: 118 RLDPRRQQKR-----MTHWQKIVISACEQSG-RCRVPQLEQPGRFDEMLQQLP-ATMRLM 170
Query: 213 AIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
A+ + LSS + +++VGPEG + +E +AG V LGP LR ETA
Sbjct: 171 LDHRASESLHDLSS--RPDAIVLLVGPEGGLSPEERRLAQQAGFKGVRLGPRVLRTETAP 228
Query: 273 IALLATL 279
+A LA +
Sbjct: 229 LAALAAI 235
>gi|94311915|ref|YP_585125.1| 16S ribosomal RNA methyltransferase RsmE [Cupriavidus metallidurans
CH34]
gi|93355767|gb|ABF09856.1| conserved hypothetical protein DUF558 [Cupriavidus metallidurans
CH34]
Length = 247
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 102/244 (41%), Gaps = 15/244 (6%)
Query: 45 PRFFSQGGI----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRI-DRTGLD 99
PRFF + V D +VLRL+ D + LFNG+GG + I R
Sbjct: 3 PRFFVDAALAADTVLELPDAVVRHVQVLRLAPGDAITLFNGQGGSHPATLTEIGKRHASA 62
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
+ D T + V A G G + DWL+EK ELG ++ PL + R
Sbjct: 63 TLGTHDAS---EAETPFAVTLAQGLAGGDKMDWLIEKAVELGVSAIQPLQAARSV-VRLS 118
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLV--SQSKLAFVAIAEA 217
G+ + I + G RL L P ++ L V + ++LA A A
Sbjct: 119 GERATKRQAHWQALIEAACEQCGRNRLP--ALAPVANLESWLTSVPATAARLALSPRASA 176
Query: 218 T--PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIAL 275
+ L A + +++GPEG + +E ++ AG V LGP LR ETA +
Sbjct: 177 SLPELAQAEREAWRAGGVTLLIGPEGGLSPEEEDRARRAGFIGVSLGPRILRTETAGLTC 236
Query: 276 LATL 279
LATL
Sbjct: 237 LATL 240
>gi|21674816|ref|NP_662881.1| 16S ribosomal RNA methyltransferase RsmE [Chlorobium tepidum TLS]
gi|21648035|gb|AAM73223.1| conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 248
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 107/231 (46%), Gaps = 27/231 (11%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQ 115
++G+EF H+ +VLR D V + +G G E + I + LD A+ + + V P TQ
Sbjct: 20 IDGEEFHHLARVLRCQPGDVVPITDGAGFAAELMVGSIGKHSLDG-AICNPRTVPPPKTQ 78
Query: 116 WNVFAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
V A LK R D +EK TELGA + P++T+ + + G G + G +
Sbjct: 79 VTV--ALSLLKSPQRFDLFLEKATELGAARIVPMITKRTVSTPDSGKVG-RKLERWRGIV 135
Query: 175 ANSAFVYGGQRLHEMVLNPPMK------IDG--LLPLVSQSKLAFVAIAEATPLVTALSS 226
++A +R H L P+ +DG L + +S+ AF + A +
Sbjct: 136 QSAA--RQSRRYHLPELMSPLTFREALVLDGYDLRLIAHESENAFPSFEPAGKKI----- 188
Query: 227 SRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
L +VG EG FT+ EV VEAG T + G LR ETA I +A
Sbjct: 189 -------LFLVGGEGGFTDAEVADAVEAGFTPLSFGESVLRAETAGIFAVA 232
>gi|153807645|ref|ZP_01960313.1| hypothetical protein BACCAC_01927 [Bacteroides caccae ATCC 43185]
gi|423217357|ref|ZP_17203853.1| RsmE family RNA methyltransferase [Bacteroides caccae CL03T12C61]
gi|149130007|gb|EDM21219.1| RNA methyltransferase, RsmE family [Bacteroides caccae ATCC 43185]
gi|392628516|gb|EIY22542.1| RsmE family RNA methyltransferase [Bacteroides caccae CL03T12C61]
Length = 233
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 99/241 (41%), Gaps = 47/241 (19%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDL--KLVLPQHTQW 116
+E H T+VLRLS D + L +GKG + I V E + K + P H
Sbjct: 18 EEAQHCTRVLRLSIGDEITLTDGKGSFYKAEITAATNKRCLVAIKETIFQKPLWPCHLH- 76
Query: 117 NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIAN 176
A T R +W EK TE+G +T FL+C F +
Sbjct: 77 --IAMAPTKNMDRNEWFAEKATEIGFDELT-----------------FLNCRF------S 111
Query: 177 SAFVYGGQRLHEMVLNP-PMKIDGLLPLVS---------------QSKLAFVAIAEATPL 220
V +R+ +++++ + LP ++ Q +A E L
Sbjct: 112 ERKVIKNERIEKILISAIKQSLKARLPKLNEMTDFNKFINQEFKGQKFIAHCYEGEKPLL 171
Query: 221 VTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
L + + L+++GPEGDF+E EV K +E G T + LG RLR ETA + TL
Sbjct: 172 KDVLKAGED---ALVLIGPEGDFSEGEVEKAIERGFTPISLGKSRLRTETAALVACHTLN 228
Query: 281 L 281
L
Sbjct: 229 L 229
>gi|365960383|ref|YP_004941950.1| 16S ribosomal RNA methyltransferase RsmE [Flavobacterium columnare
ATCC 49512]
gi|365737064|gb|AEW86157.1| 16S ribosomal RNA methyltransferase RsmE [Flavobacterium columnare
ATCC 49512]
Length = 247
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 99/234 (42%), Gaps = 24/234 (10%)
Query: 57 EGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQW 116
+ +E H+ KVLR D + + NG G L E T + + + + + + H +
Sbjct: 32 DKEESKHIVKVLRKKEGDILFVTNGFGFLFE--------TEITLASEKKCSIKINNHKTF 83
Query: 117 NV------FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFY 170
N A T R +W +EK TE+G +TP++ E H + I + F
Sbjct: 84 NQTGFYLHLAVAPTKMNERYEWFLEKATEIGIHEITPIICE-HSERTSIKTDRFDK---- 138
Query: 171 YGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNE 230
I SA Q H LN + + + +L F+A E +
Sbjct: 139 ---IIQSAMKQSNQ-FHLPKLNKAISFKDFINKDFEGQL-FIAHCEDSDKKNLKKEITPN 193
Query: 231 SSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSD 284
S I++GPEGDF+EKE+ V G V LG RLR ETA + +++ ++
Sbjct: 194 SKYTILIGPEGDFSEKEIRLAVNKGFIPVTLGNTRLRTETAAVVACHSVVFSNE 247
>gi|398941312|ref|ZP_10669771.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM41(2012)]
gi|398161781|gb|EJM50001.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM41(2012)]
Length = 239
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 105/220 (47%), Gaps = 18/220 (8%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR++ D ++LF+G G + + + VV D + ++
Sbjct: 26 YISRVLRMAEGDALQLFDGSGHEFRATLVEVGKK--RVVVQIDESFTGQVESPLSIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLT---ELHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G +G R DW ++K TELG +TP+ + E+ L+ + D + ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVTEITPIFSDRCEVRLKDER-ADKRLM----HWRQVAISAC 138
Query: 180 VYGGQRLHEMVLNPPMKI-DGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVG 238
G R V++PP+ + D L ++ KL +AE PLV S ++ ++G
Sbjct: 139 EQCG-RSRVPVIHPPLLLADWLKQTEAELKLVLHPVAE--PLV----SHAKPATLAFLIG 191
Query: 239 PEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
PEG ++ EV + G A LGP LR ETA + LA
Sbjct: 192 PEGGLSDAEVEQAKAGGFHAARLGPRVLRTETAPVVALAV 231
>gi|150006102|ref|YP_001300846.1| 16S ribosomal RNA methyltransferase RsmE [Bacteroides vulgatus ATCC
8482]
gi|294775280|ref|ZP_06740803.1| RNA methyltransferase, RsmE family [Bacteroides vulgatus PC510]
gi|319641723|ref|ZP_07996406.1| hypothetical protein HMPREF9011_02004 [Bacteroides sp. 3_1_40A]
gi|345519845|ref|ZP_08799256.1| hypothetical protein BSFG_02737 [Bacteroides sp. 4_3_47FAA]
gi|423314245|ref|ZP_17292179.1| RsmE family RNA methyltransferase [Bacteroides vulgatus CL09T03C04]
gi|149934526|gb|ABR41224.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
gi|254836281|gb|EET16590.1| hypothetical protein BSFG_02737 [Bacteroides sp. 4_3_47FAA]
gi|294450857|gb|EFG19334.1| RNA methyltransferase, RsmE family [Bacteroides vulgatus PC510]
gi|317386697|gb|EFV67593.1| hypothetical protein HMPREF9011_02004 [Bacteroides sp. 3_1_40A]
gi|392683015|gb|EIY76353.1| RsmE family RNA methyltransferase [Bacteroides vulgatus CL09T03C04]
Length = 233
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 100/242 (41%), Gaps = 49/242 (20%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
+E H +VLRLS D + L +GKG + I V E +PQ WN
Sbjct: 18 EEAGHCLRVLRLSIGDEIMLTDGKGCFYKAVISAASGKRCQVKVTE----TIPQEKGWNG 73
Query: 119 F---AAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
+ A T R +W EK TE+G ++ FL+C +
Sbjct: 74 WLHIAMAPTKNMDRTEWFTEKATEIGFDELS-----------------FLNCRY------ 110
Query: 176 NSAFVYGGQRLHEMVLNP-PMKIDGLLPLVS---------------QSKLAFVAIAEATP 219
+ V +R+ +++++ + +P+++ Q +A E
Sbjct: 111 SERKVIKKERIEKILVSAVKQSLKATMPVLNEMTDFNKFVSRDFKGQKFIAHCYEGEKPL 170
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
L L S + L+++GPEGDF+E+EV K + AG V LG RLR ETA + TL
Sbjct: 171 LKDILRSGED---ALVMIGPEGDFSEEEVAKAIAAGFQPVSLGKSRLRTETAALVACHTL 227
Query: 280 ML 281
L
Sbjct: 228 NL 229
>gi|218129752|ref|ZP_03458556.1| hypothetical protein BACEGG_01331 [Bacteroides eggerthii DSM 20697]
gi|317475901|ref|ZP_07935157.1| RNA methyltransferase [Bacteroides eggerthii 1_2_48FAA]
gi|217987862|gb|EEC54187.1| RNA methyltransferase, RsmE family [Bacteroides eggerthii DSM
20697]
gi|316907934|gb|EFV29632.1| RNA methyltransferase [Bacteroides eggerthii 1_2_48FAA]
Length = 232
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 104/246 (42%), Gaps = 49/246 (19%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWN- 117
+E H +VLRL T D V L +GKG I T + L +L +PQ W+
Sbjct: 18 EEAAHAVRVLRLQTGDEVTLTDGKGNFYRAEIS----TATNKRCLVNLLETIPQTPLWSG 73
Query: 118 --VFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
A T R +W EK TE+G +T FL+C F
Sbjct: 74 HLHIAMAPTKNMDRTEWFAEKATEIGFDELT-----------------FLNCRF------ 110
Query: 176 NSAFVYGGQRLHEMVLNP-PMKIDGLLP----------LVSQSKLAFVAIAEA----TPL 220
+ V +R+ +++++ + LP +SQ IA PL
Sbjct: 111 SERKVIKTERIAKILISAIKQSLKARLPQLNEMTDFNKFISQPFNGRKFIAHCYEGDKPL 170
Query: 221 VTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
+ + R L+++GPEGDF+E+EV K +E G + LG RLR ETA AL+A +
Sbjct: 171 LKDIV--RKGEDALVLIGPEGDFSEEEVKKAIENGFEPISLGRSRLRTETA--ALVACHI 226
Query: 281 LCSDSQ 286
L +Q
Sbjct: 227 LNLQNQ 232
>gi|302389476|ref|YP_003825297.1| hypothetical protein Toce_0912 [Thermosediminibacter oceani DSM
16646]
gi|302200104|gb|ADL07674.1| protein of unknown function DUF558 [Thermosediminibacter oceani DSM
16646]
Length = 256
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 117/248 (47%), Gaps = 18/248 (7%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRI---DR 95
+P FF + G +V + G++ H+ +VLR+ D + L NG L G I + DR
Sbjct: 1 MPIFFIHGKMNPGEVVEISGEDAHHIARVLRMGKGDLLSLSNGLDALGTGQILELFPEDR 60
Query: 96 TGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQ 155
+ V +E K P+ + +F + KG + D +++K TELG P++TE +
Sbjct: 61 K-IKVKVIEKNKFE-PRRPRITLFQSVP--KGQKFDLILQKNTELGVSEFVPVITERTVV 116
Query: 156 SRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIA 215
+ G++ + +A +R V+ P+ DG L L+ ++ V
Sbjct: 117 EIE-GESKSKKAERWRKITKEAA--KQCRRPDLPVVREPVSFDGCLELLKNYRIVLVPWE 173
Query: 216 --EATPLVTALSSSRNESSGL-IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
L + LS+ + + +++GPEG F+ +E+ + ++GA V LGP LR ETA
Sbjct: 174 GEREVFLKSILSNVPPDVPDIAVLIGPEGGFSVQEIERARKSGAVTVSLGPRILRTETAG 233
Query: 273 IALLATLM 280
+ A LM
Sbjct: 234 FVVTAVLM 241
>gi|424888497|ref|ZP_18312100.1| RNA methyltransferase, RsmE family [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393174046|gb|EJC74090.1| RNA methyltransferase, RsmE family [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 245
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 105/221 (47%), Gaps = 12/221 (5%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
S+G + V D+F ++ VLR+ V LFNG+ G + + R + + A+E+ +
Sbjct: 16 LSRGVALEVNVDQFNYLANVLRMQEGGEVLLFNGRDGEWKATLTFPTRKRIQLTAIEETR 75
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
PQ ++ F LK GR D+LV+K E+GA + P++T+ H+Q KI + L
Sbjct: 76 ---PQPAPCDLHYLFAPLKVGRLDYLVQKAVEMGAGLLQPVMTQ-HVQG-KITNLDKLRA 130
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSS 227
N A V G + E P +D L + ++ + +A + S+
Sbjct: 131 NVVEA--AEQCGVLGIPEVAE----PVRLLDLLDRWPKERRIIYCDEGDAGQNPLPVLSA 184
Query: 228 RNESSGLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLR 267
E ++VGPEG F+E+E ++ TA+ LGP LR
Sbjct: 185 IRERHLALLVGPEGGFSEEERARLRSLDFVTAIPLGPRILR 225
>gi|192360419|ref|YP_001980593.1| hypothetical protein CJA_0070 [Cellvibrio japonicus Ueda107]
gi|190686584|gb|ACE84262.1| conserved hypothetical protein TIGR00046 [Cellvibrio japonicus
Ueda107]
Length = 241
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 110/244 (45%), Gaps = 20/244 (8%)
Query: 44 IPRFFSQ-----GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
IPR ++ G V++E H++KVLR+ + LFNG GG I I + +
Sbjct: 3 IPRIYTNQTLLTGNKVQLEESASHHLSKVLRMQPGRELVLFNGAGGEFAATIDEISKRHV 62
Query: 99 DV-VALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQ 155
+A + P + + + A G +G R +W+++K TELG +TPL+TE
Sbjct: 63 TASIAAHN-----PHNRESPLQLELAIGISRGERFEWVLQKATELGVTKITPLMTE--RT 115
Query: 156 SRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIA 215
K+ + I SA + L L+ P+ I L V ++L FV
Sbjct: 116 EVKVSGERQEKIMERWQHILISACEQCQRNLLPQ-LSAPVPITDWLKTVD-AELRFVLHH 173
Query: 216 EATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIAL 275
+ L + + S +++GPEG ++ E+ + A+ LGP LR ETA IA
Sbjct: 174 RDS---QTLPADKKPHSAALLIGPEGGLSDDEIALAKQQEFAALTLGPRVLRTETAPIAA 230
Query: 276 LATL 279
++ +
Sbjct: 231 ISVV 234
>gi|407684817|ref|YP_006799991.1| hypothetical protein AMEC673_14660 [Alteromonas macleodii str.
'English Channel 673']
gi|407246428|gb|AFT75614.1| hypothetical protein AMEC673_14660 [Alteromonas macleodii str.
'English Channel 673']
Length = 242
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 111/243 (45%), Gaps = 17/243 (6%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
IPR + I + D H+ VLR+ N + LFNG G I + R +
Sbjct: 3 IPRVYYPNPIPLEQEFELTEDAGHHIATVLRIKPNRPIVLFNGDGNEYSAQIISVQRKKV 62
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
V A D L L + + ++ G KG R D +++K ELG +TP++TE + K
Sbjct: 63 TVEA--DACLSLAKESPLHLHLGQGVSKGDRMDTVLQKSVELGVSEITPVITERC--TVK 118
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLL-PLVSQSKLAFVAIAEA 217
+ ++ + + I A G+ + LN P+ ++ L + ++L AE
Sbjct: 119 LDESRWEKKIQQWQKIIIGACEQSGRNIIP-ALNAPVSLNQWLSSSTNTTRLVLAPGAEQ 177
Query: 218 TPLVTALSSSRNESSGL-IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALL 276
+ L+ + G +++GPEG +E E+++ E G +V LGP +R ETA I L
Sbjct: 178 S-----LARQPYNAQGFRLLIGPEGGLSETEIHQANENGYQSVSLGPRIMRTETAAITSL 232
Query: 277 ATL 279
+ L
Sbjct: 233 SIL 235
>gi|212692063|ref|ZP_03300191.1| hypothetical protein BACDOR_01558 [Bacteroides dorei DSM 17855]
gi|345516637|ref|ZP_08796126.1| hypothetical protein BSEG_03071 [Bacteroides dorei 5_1_36/D4]
gi|423232222|ref|ZP_17218623.1| RsmE family RNA methyltransferase [Bacteroides dorei CL02T00C15]
gi|423241841|ref|ZP_17222952.1| RsmE family RNA methyltransferase [Bacteroides dorei CL03T12C01]
gi|423242733|ref|ZP_17223809.1| RsmE family RNA methyltransferase [Bacteroides dorei CL02T12C06]
gi|212665455|gb|EEB26027.1| RNA methyltransferase, RsmE family [Bacteroides dorei DSM 17855]
gi|229436853|gb|EEO46930.1| hypothetical protein BSEG_03071 [Bacteroides dorei 5_1_36/D4]
gi|392624523|gb|EIY18603.1| RsmE family RNA methyltransferase [Bacteroides dorei CL02T00C15]
gi|392640369|gb|EIY34170.1| RsmE family RNA methyltransferase [Bacteroides dorei CL03T12C01]
gi|392647176|gb|EIY40880.1| RsmE family RNA methyltransferase [Bacteroides dorei CL02T12C06]
Length = 233
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 100/242 (41%), Gaps = 49/242 (20%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
+E H +VLRLS D + L +GKG + I V E +PQ WN
Sbjct: 18 EEAGHCLRVLRLSIGDEIMLTDGKGCFYKAVISAASGKRCQVKVTE----TIPQEKGWNG 73
Query: 119 F---AAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
+ A T R +W EK TE+G ++ FL+C +
Sbjct: 74 WLHIAMAPTKNMDRTEWFTEKATEIGFDELS-----------------FLNCRY------ 110
Query: 176 NSAFVYGGQRLHEMVLNP-PMKIDGLLPLVS---------------QSKLAFVAIAEATP 219
+ V +R+ +++++ + +P+++ Q +A E
Sbjct: 111 SERKVIKKERIEKILVSAVKQSLKATMPVLNEMTDFNKFVSRDFKGQKFIAHCYEGEKLL 170
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
L L S + L+++GPEGDF+E+EV K + AG V LG RLR ETA + TL
Sbjct: 171 LKDILRSGED---ALVMIGPEGDFSEEEVAKAIAAGFQPVSLGKSRLRTETAALVACHTL 227
Query: 280 ML 281
L
Sbjct: 228 NL 229
>gi|332293484|ref|YP_004432093.1| hypothetical protein Krodi_2850 [Krokinobacter sp. 4H-3-7-5]
gi|332171570|gb|AEE20825.1| protein of unknown function DUF558 [Krokinobacter sp. 4H-3-7-5]
Length = 234
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 95/218 (43%), Gaps = 18/218 (8%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
DE H+ +VLR T D + L NG G L + + + +E P++ + ++
Sbjct: 21 DESKHVIRVLRKKTGDAIHLTNGHGYLFNAIVAEENPNKCRL-QIESYSYQEPRNYKLHL 79
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSA 178
A L R +W +EK TE+G +TPLL + H + + I + F+ I SA
Sbjct: 80 AVAPTKL-NDRFEWFLEKATEIGITEITPLLCD-HSERKVIKEERFMK-------IIQSA 130
Query: 179 FVYGGQRLHEMVLNPPMK-IDGLLPLVSQSKL--AFVAIAEATPLVTALSSSRNESSGLI 235
Q LH + P M + V F+A E + + S I
Sbjct: 131 M---KQSLHYHL--PKMNALTSFSDFVGHQNHEDTFIAHCEDLKKESLKDYLKPNKSYTI 185
Query: 236 IVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
++GPEGDF+ E+ ++ G V LG RLR ETA I
Sbjct: 186 LIGPEGDFSPAEIELALKQGIIPVSLGKSRLRTETAAI 223
>gi|209548049|ref|YP_002279966.1| 16S ribosomal RNA methyltransferase RsmE [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|209533805|gb|ACI53740.1| protein of unknown function DUF558 [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 245
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 103/221 (46%), Gaps = 12/221 (5%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
S G + D+F ++ VLR+ V LFNG+ G + + R + + A+E+ +
Sbjct: 16 LSSGAALEANADQFNYLANVLRMEEGGEVLLFNGRDGEWKATLTFPTRKRIQLTAIEETR 75
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
PQ ++ F LK GR D+LV+K E+GA + P++T+ H+Q KI + L
Sbjct: 76 ---PQPAPCDLHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQ-HVQG-KITNLDKLRA 130
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSS 227
N A V G + E P +D L + ++ + +A + S+
Sbjct: 131 NVVEA--AEQCGVLGIPDVAE----PVRLLDLLDRWPKERRIIYCDEGDAGQNPLPVLSA 184
Query: 228 RNESSGLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLR 267
E ++VGPEG F+E+E ++ TA+ LGP LR
Sbjct: 185 IRERHLALLVGPEGGFSEEERARLRSLDFVTAIPLGPRILR 225
>gi|390935153|ref|YP_006392658.1| Ribosomal RNA small subunit methyltransferase E
[Thermoanaerobacterium saccharolyticum JW/SL-YS485]
gi|389570654|gb|AFK87059.1| Ribosomal RNA small subunit methyltransferase E
[Thermoanaerobacterium saccharolyticum JW/SL-YS485]
Length = 248
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 104/230 (45%), Gaps = 14/230 (6%)
Query: 50 QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLV 109
+ GIVR+ GD+ H+ VLRL + + NG I I+ T + + + +L V
Sbjct: 15 KDGIVRIHGDDAHHIKDVLRLKIGTDLVVSNGVKQY-NASILSIESTSVLLKIVGELHQV 73
Query: 110 LPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLS 166
+ +F G K + D +V+KCTE+G + + P+ TE + ++ + IG+
Sbjct: 74 VESSINVTLFQ--GLPKSDKMDLIVQKCTEIGIKKIVPVETEFSVIKVKEKSIGN----K 127
Query: 167 CNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP--LVTAL 224
N + I+ A G+ + VL P + + L + + L + T L L
Sbjct: 128 IN-RWNKISQEASKQSGRLIVPEVLEP-ISFNIALNYIQEFDLCIMPYERETNVRLKDVL 185
Query: 225 SSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274
+ + I +GPEG F+ EV + GA V LGP LR ETA I
Sbjct: 186 RENNGAKNICIFIGPEGGFSSSEVTMATKNGAVIVTLGPRILRTETAGIV 235
>gi|422603810|ref|ZP_16675828.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
mori str. 301020]
gi|330886230|gb|EGH20131.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
mori str. 301020]
Length = 239
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 115/246 (46%), Gaps = 15/246 (6%)
Query: 44 IPRFFSQGGIVRVEGD----EFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
+ RFF++ + E + + ++++VLR++ D ++LF+G G G + + + +
Sbjct: 3 LSRFFTEAPLSLGEHELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKRVH 62
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
V E + + + G +G R DW ++K TELG +TP+++E ++
Sbjct: 63 VQLTESFAGQV--ESGLRIHLGQGLSRGERMDWAIQKATELGVGEITPIVSER--CEVRL 118
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
D ++ IA SA G+ + V++ PM + + +++ L V P
Sbjct: 119 KDERAEKRQAHWQQIAISACEQCGRSV-VPVIHAPMPLAEWIKH-TEADLKLVL----HP 172
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA-TIALLAT 278
+ L+S +S ++GPEG + EV++ AG A LGP LR ETA +AL
Sbjct: 173 VAEPLTSHDKPASLAFLIGPEGGLNDAEVDQAQAAGFHAARLGPRVLRTETAPAVALSVA 232
Query: 279 LMLCSD 284
L D
Sbjct: 233 QQLWGD 238
>gi|255525324|ref|ZP_05392264.1| protein of unknown function DUF558 [Clostridium carboxidivorans P7]
gi|296188192|ref|ZP_06856584.1| RNA methyltransferase, RsmE family [Clostridium carboxidivorans P7]
gi|255510996|gb|EET87296.1| protein of unknown function DUF558 [Clostridium carboxidivorans P7]
gi|296047318|gb|EFG86760.1| RNA methyltransferase, RsmE family [Clostridium carboxidivorans P7]
Length = 251
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 113/231 (48%), Gaps = 14/231 (6%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQ 115
+ GD+ H+ KVLRL D+V + N G G I+ I++ + V ++ KL L +
Sbjct: 18 INGDDVKHIYKVLRLQVGDKVNINNCGGEEFLGEIEEINKKQVIVKFIK--KLPLNNESN 75
Query: 116 WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
V+ G K + D +V+K TELG + VTP++TE + ++G+ F + +
Sbjct: 76 VEVYLFQGLPKSAKMDLIVQKTTELGVKEVTPIVTERVVVKNELGE--FKKIDRW----C 129
Query: 176 NSAFVYGGQRLHEMV--LNPPMKIDGLLPLVSQSKLAFVAI--AEATPLVTALSSSRNES 231
A Q +V +N P++ LL ++ Q L V AE + +++ +S
Sbjct: 130 RIALEACKQSKRSLVPKINTPIEFQSLLEVLKQMDLIVVPYENAEGYGIKKVVNNIDKDS 189
Query: 232 --SGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
II+GPEG F E E+ + + GA V LGP LR ETA ++ LM
Sbjct: 190 IKKIGIIIGPEGGFEESEIEALEKLGAHIVTLGPRILRTETAGFVCMSLLM 240
>gi|206890400|ref|YP_002249400.1| hypothetical protein THEYE_A1605 [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|206890475|ref|YP_002249450.1| hypothetical protein THEYE_A1657 [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|206742338|gb|ACI21395.1| conserved hypothetical protein [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|206742413|gb|ACI21470.1| conserved hypothetical protein [Thermodesulfovibrio yellowstonii
DSM 11347]
Length = 236
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 113/236 (47%), Gaps = 28/236 (11%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
F G I+ + ++ ++ VLR D + +FNGKG I ID ++++ E+L
Sbjct: 13 FFPGKILELSNEDRKYLFNVLRCHPGDTLSIFNGKGKSFHAKI--IDLKTIEILQEEEL- 69
Query: 108 LVLPQHTQWNVFA---AFGTLKGGRADWLVEKCTELGAQSVTPLLTELHL--QSRKIGDN 162
HT+ +VF+ LKG + D +++K TELG + + P +++ + +RKIG
Sbjct: 70 -----HTE-DVFSITLCQALLKGEKMDMIIQKATELGVKKIIPFVSDRCIVRHTRKIG-- 121
Query: 163 GFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT-PLV 221
+ IA A ++ H ++ + L+ + +AT PL+
Sbjct: 122 -------RWEKIAKEA----SEQSHRSIVPEISNVINFSELIKNIDNGILFWEKATSPLI 170
Query: 222 TALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
+S ++ + +++GPEG F+++EV++ + LG L+ ETA+I +A
Sbjct: 171 QTISEVNHDKNIFLLIGPEGGFSQEEVSQAEKMNIKTASLGKRILKAETASIVSVA 226
>gi|395490219|ref|ZP_10421798.1| 16S ribosomal RNA methyltransferase RsmE [Sphingomonas sp. PAMC
26617]
Length = 246
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 102/229 (44%), Gaps = 20/229 (8%)
Query: 45 PRFFSQG----GIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV 100
PR F + G +RVEG + ++ V+R+ D V+LF+G+ G G + + L +
Sbjct: 13 PRLFVEHRLARGPLRVEGAQAHYLATVMRMKPGDPVKLFDGESGEWLGVAASVGKRDLML 72
Query: 101 VALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIG 160
+ L+ +H +++ +K GR DW+ EK ELG + P+LT + R G
Sbjct: 73 DVTDQLRTR--EHVP-DLWLCAAPIKKGRIDWVAEKACELGVARLVPVLTRRTIVDRLNG 129
Query: 161 DNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLL-PLVSQSKLAFVAIAEATP 219
+ + +A G + E L P+K+ LL + L F TP
Sbjct: 130 ER-------LRAHMIEAAEQCGRTAVPE--LAEPVKLTALLRDWPAGRALYFADETGGTP 180
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKI-VEAGATAVGLGPHRLR 267
A+ I++GPEG F + E + I GATA+ LGP LR
Sbjct: 181 AAAAMRD--GPPCAAILIGPEGGFDDAERDAIRAVPGATAITLGPRILR 227
>gi|421477105|ref|ZP_15924956.1| RNA methyltransferase, RsmE family [Burkholderia multivorans CF2]
gi|400227130|gb|EJO57143.1| RNA methyltransferase, RsmE family [Burkholderia multivorans CF2]
Length = 255
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 102/248 (41%), Gaps = 35/248 (14%)
Query: 42 GGIPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRT 96
+PRFF + + + D H +VLRL DR+ LF+G GG + ID+
Sbjct: 8 AAVPRFFVDTALRADATLALPADVARH-AQVLRLQPGDRLALFDGTGGQYRARLVEIDKR 66
Query: 97 GLDVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHL 154
AL + P + + V A G G + DW++EK ELG +V PL T +
Sbjct: 67 S----ALAQIDAFDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGV 122
Query: 155 QSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLN----------PPMKIDGLLPLV 204
+ G+ + G + S G R+ ++ PP DG L L+
Sbjct: 123 -VKLSGERAEKRVAHWRGVVRASCEQCGRNRVPDVAAVRAFAAWLDSLPPAPADGELRLL 181
Query: 205 --SQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLG 262
++ + F ++ +A P +++GPEG + E G TA+ LG
Sbjct: 182 LSPRASIPFASLPDAPPAAPVT----------LLIGPEGGLSPDEEAAARARGFTALSLG 231
Query: 263 PHRLRVET 270
P LR ET
Sbjct: 232 PRVLRTET 239
>gi|336173724|ref|YP_004580862.1| ribosomal RNA small subunit methyltransferase E [Lacinutrix sp.
5H-3-7-4]
gi|334728296|gb|AEH02434.1| Ribosomal RNA small subunit methyltransferase E [Lacinutrix sp.
5H-3-7-4]
Length = 234
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 97/218 (44%), Gaps = 18/218 (8%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
+E H+ KVLR D + + NGKG + I + +E ++V +N+
Sbjct: 21 EESRHIVKVLRKRDGDILHITNGKGDVFTAVILI---AAIKSCTVEIKEVVTQNPLNYNL 77
Query: 119 FAAFGTLK-GGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANS 177
A K R +W +EK TE+G S+TP++ + H + + I ++ F I S
Sbjct: 78 HLAVAPTKMNDRYEWFLEKATEIGISSITPIICD-HSERKVIKEDRFEK-------ILQS 129
Query: 178 AFVYGGQRLHEMV--LNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLI 235
A Q L + LNP + L S L ++A E T + + + I
Sbjct: 130 AM---KQSLSAYLPKLNPAIAFKEFLKQDFNSAL-YIAHCEETNKKSLKKVLQTNTDITI 185
Query: 236 IVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
++GPEGDF+ KE+ + V LG RLR ETA I
Sbjct: 186 LIGPEGDFSTKEIELALANNYIPVTLGETRLRTETAAI 223
>gi|73542528|ref|YP_297048.1| 16S ribosomal RNA methyltransferase RsmE [Ralstonia eutropha
JMP134]
gi|72119941|gb|AAZ62204.1| Conserved hypothetical protein 46 [Ralstonia eutropha JMP134]
Length = 249
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 104/246 (42%), Gaps = 17/246 (6%)
Query: 45 PRFF-SQGGIVRVEGDEF------WHMTKVLRLSTNDRVELFNGKGGLIEGCIQRI-DRT 96
PRFF G +F +VLRL+ D + LF+G+GG + + R
Sbjct: 3 PRFFVGSADAALAAGTDFDLPEAVVRHVQVLRLAPGDAITLFDGRGGSHAATLLDLGKRH 62
Query: 97 GLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
L V D P + V A G G + DWL+EK ELG ++ PL +
Sbjct: 63 ALARVGERDNTETEPP---FRVMLAQGLAGGDKMDWLIEKAVELGVTAIQPLQAARSV-V 118
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVA--I 214
R GD + + + G RL + P +D L + V+
Sbjct: 119 RLSGDRAQKRQAHWQALVEAACEQCGRNRLPAVA--PVTNLDTWLRAAGEGNRLLVSPRA 176
Query: 215 AEATPLVTALSSSRNESSGL-IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
++ P A + + G+ +++GPEG +E + + AG TAV LGP LR ETA +
Sbjct: 177 DQSLPAYAAANRVSLLAGGVTLLIGPEGGLAPEEEDAALHAGFTAVSLGPRILRTETAGL 236
Query: 274 ALLATL 279
A LATL
Sbjct: 237 ACLATL 242
>gi|329888452|ref|ZP_08267050.1| RNA methyltransferase, RsmE family protein [Brevundimonas diminuta
ATCC 11568]
gi|328847008|gb|EGF96570.1| RNA methyltransferase, RsmE family protein [Brevundimonas diminuta
ATCC 11568]
Length = 239
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 15/231 (6%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
+ G +V D+ ++T+V+RL D + +FNG+ G + + + G+ + A E ++
Sbjct: 10 LAPGAVVAPTLDQSRYLTQVMRLKAGDELLVFNGRDGEWRVSVAEVLKKGVILRAEEQMR 69
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
PQ ++ +K R + +VEK ELGA+ V L L R D L
Sbjct: 70 ---PQVYGPDLELIVAVVKKARVETIVEKAAELGAKRV-----RLALTHRTNADRLRLD- 120
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLP-LVSQSKLAFVAIAEATPLVTALSS 226
IA A G RL V++ P+K+D LL + +L F P +AL+
Sbjct: 121 --RLDAIAEEAAEQTG-RLDVPVVDDPVKLDALLDGWEAGRRLMFCDETGGAPAASALTQ 177
Query: 227 SRNESSGLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLRVETATIALL 276
+ + I++GPEG F+ +E ++ TAV LGP LR +TA IA +
Sbjct: 178 A-GDGKWAILIGPEGGFSPEEGERLRSLPFTTAVSLGPRILRADTAAIAAM 227
>gi|390955529|ref|YP_006419287.1| RsmE family RNA methyltransferase [Aequorivita sublithincola DSM
14238]
gi|390421515|gb|AFL82272.1| RNA methyltransferase, RsmE family [Aequorivita sublithincola DSM
14238]
Length = 236
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 100/230 (43%), Gaps = 12/230 (5%)
Query: 45 PRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE 104
P + V + +E H+ KVLR+ D ++ NGKG I + G +V +
Sbjct: 7 PNISNNSKEVTFDKEESRHIVKVLRMKDGDDFKITNGKGSFFNAEITNANPKGC-LVKII 65
Query: 105 DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGF 164
++ P Q ++ A L R +W +EK TE+G +TP++ H + + I +
Sbjct: 66 SEEIQPPMSYQLHLAVAPTKL-NDRYEWFLEKATEIGISEITPIIC-AHSERKTIKPD-- 121
Query: 165 LSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSK-LAFVAIAEATPLVTA 223
Y I SA + + + VLN + + S+ L +A E T +
Sbjct: 122 -----RYEKILQSA-MKQSLKAYLPVLNEAVSFKDFINSEKSSEGLKCIAHCEETDKKSL 175
Query: 224 LSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
S I++GPEGDF+ +E+ +G V LG RLR ETA I
Sbjct: 176 KSVINKNQKITILIGPEGDFSSEEIELAKMSGYIPVTLGESRLRTETAAI 225
>gi|254492173|ref|ZP_05105347.1| conserved hypothetical protein TIGR00046 [Methylophaga thiooxidans
DMS010]
gi|224462498|gb|EEF78773.1| conserved hypothetical protein TIGR00046 [Methylophaga thiooxydans
DMS010]
Length = 242
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 110/252 (43%), Gaps = 36/252 (14%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
IPRFF + ++ + H +VLRL R++LFNGKG + + ++R
Sbjct: 3 IPRFFCPELDASQRVLPLPEAVHRHAIQVLRLKQGARIQLFNGKGLEYQATLTHVERKRS 62
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQ 155
+ E +L + N+ G +G R D+ ++K ELG + P++TE + L+
Sbjct: 63 EAELGE--QLTQASESPLNITLLQGISRGERMDFAIQKAVELGVNQIIPVMTERCNVQLK 120
Query: 156 SRKIGDNGFLSCNFYYGFIANSAFVYGGQ---RLHEMV-----LNPPMKIDGLLPLVSQS 207
+I + G I ++ G L E+V LN L+ L Q+
Sbjct: 121 HDRIEKR----LAHWQGVIVSACEQSGRAVLPTLSEVVDMQNALNSTADTMKLV-LDPQA 175
Query: 208 KLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLR 267
+ F + AT L +++GPEG T+ EV +G TAV GP LR
Sbjct: 176 QTRFNDLQAATQLT-------------LLIGPEGGLTDDEVKMATSSGFTAVQFGPRILR 222
Query: 268 VETATIALLATL 279
ETA+ A LA +
Sbjct: 223 TETASTAALAVV 234
>gi|333897339|ref|YP_004471213.1| ribosomal RNA small subunit methyltransferase E
[Thermoanaerobacterium xylanolyticum LX-11]
gi|333112604|gb|AEF17541.1| Ribosomal RNA small subunit methyltransferase E
[Thermoanaerobacterium xylanolyticum LX-11]
Length = 248
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 106/230 (46%), Gaps = 14/230 (6%)
Query: 50 QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLV 109
+ GIVR+ GD+ H+ VLRL + + NG I I+ T + + +++L V
Sbjct: 15 KDGIVRIYGDDAHHIKDVLRLRIGTDLVVSNGVKQY-NASILSIESTSVLLKIVDELHQV 73
Query: 110 LPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLS 166
+ +F G K + D +V+KCTE+G + + P+ TE + ++ + IG+
Sbjct: 74 VESSINVTLFQ--GLPKSDKMDLIVQKCTEIGIKKIVPVETEFSIIKVKEKSIGN----K 127
Query: 167 CNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP--LVTAL 224
N + I+ A G+ + VL P + + +++ L + T L L
Sbjct: 128 IN-RWNKISQEASKQSGRLIVPEVLEP-ISFTIAVNYINEFDLCVMPYERETNVRLKDVL 185
Query: 225 SSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274
+ + I +GPEG F+ EV+ + GA V LGP LR ETA I
Sbjct: 186 KENNGAKNICIFIGPEGGFSHSEVDTATKNGAVIVTLGPRILRTETAGIV 235
>gi|407368121|ref|ZP_11114653.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas mandelii
JR-1]
Length = 239
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 104/220 (47%), Gaps = 18/220 (8%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR++ D ++LF+G G + + + VV D + +
Sbjct: 26 YISRVLRMAEGDALQLFDGSGHEFRATLVEVGKK--RVVVQIDESFAGQIESPLQIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLT---ELHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G +G R DW ++K TELG +TP+ + E+ L+ + D + ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVTEITPIFSDRCEVRLKDER-ADKRLM----HWRQVAISAC 138
Query: 180 VYGGQRLHEMVLNPPMKI-DGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVG 238
G R V++PP+ + D L ++ KL +AE PLV S ++ ++G
Sbjct: 139 EQCG-RSRVPVIHPPLLLADWLKQTEAELKLVLHPVAE--PLV----SHAKPTTLAFLIG 191
Query: 239 PEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
PEG ++ EV + G A LGP LR ETA + LA
Sbjct: 192 PEGGLSDAEVEQAKAGGFHAARLGPRVLRTETAPVVALAV 231
>gi|116250629|ref|YP_766467.1| 16S ribosomal RNA methyltransferase RsmE [Rhizobium leguminosarum
bv. viciae 3841]
gi|115255277|emb|CAK06352.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 245
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 104/221 (47%), Gaps = 12/221 (5%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
S G +V D+F ++ VLR+ + LFNG+ G + + R + + A E+ +
Sbjct: 16 LSSGAVVEANADQFNYLGNVLRMEEGAEILLFNGRDGEWKATLTFPTRKRILLTATEETR 75
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
PQ ++ F LK GR D+LV+K E+GA + P++T+ H+Q KI + L
Sbjct: 76 ---PQPQPCDLHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQ-HVQG-KITNLDKLRA 130
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSS 227
N A + G + E P +D L S+ ++ + +A + S+
Sbjct: 131 NVVEA--AEQCGILGIPDVAE----PVRLLDLLDHWPSERRIIYCDEGDAGQNPLPVLSA 184
Query: 228 RNESSGLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLR 267
E ++VGPEG F+E+E ++ TA+ LGP LR
Sbjct: 185 IRERHLALLVGPEGGFSEEERARLRSLDFVTAIPLGPRILR 225
>gi|134137877|gb|ABO53620.1| 16S rRNA m(3)U-1498 methyltransferase [Burkholderia vietnamiensis
G4]
Length = 262
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 102/246 (41%), Gaps = 35/246 (14%)
Query: 44 IPRFFSQ-----GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF + G + + D H +VLRL D + LF+G GG + ID+
Sbjct: 17 VPRFFVEATLRAGATLALPADVARH-AQVLRLEPGDALVLFDGSGGQYRAQLVEIDKRN- 74
Query: 99 DVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
AL L P + + V A G G + DW++EK ELG +V PL T +
Sbjct: 75 ---ALAQLDAFEPVEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLTTARGV-V 130
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLN----------PPMKIDGLLPLV-- 204
+ G+ + G + S G R+ E+ P DG L L+
Sbjct: 131 KLSGERADKRVAHWRGVVRASCEQCGRNRVPEVAAVRGFGAWLDALPAAPADGELRLLLS 190
Query: 205 SQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPH 264
++ + F ++ + P T +++GPEG + E N G TA+ LGP
Sbjct: 191 PRASIPFASLPDQPPAATVT----------LLIGPEGGLSPDEENAARAHGFTALSLGPR 240
Query: 265 RLRVET 270
LR ET
Sbjct: 241 VLRTET 246
>gi|237709004|ref|ZP_04539485.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|229457066|gb|EEO62787.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
Length = 233
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 100/242 (41%), Gaps = 49/242 (20%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
+E H +VLRLS D + L +GKG + I V E +PQ WN
Sbjct: 18 EEAGHCLRVLRLSIGDEIMLTDGKGCFYKAVISAASGKRCQVKVTE----AIPQEKGWNG 73
Query: 119 F---AAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
+ A T R +W EK TE+G ++ FL+C +
Sbjct: 74 WLHIAMAPTKNMDRTEWFTEKATEIGFDELS-----------------FLNCRY------ 110
Query: 176 NSAFVYGGQRLHEMVLNP-PMKIDGLLPLVS---------------QSKLAFVAIAEATP 219
+ V +R+ +++++ + +P+++ Q +A E
Sbjct: 111 SERKVIKKERIEKILVSAVKQSLKATMPVLNEMTDFNKFVSRDFKGQKFIAHCYEGEKFL 170
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
L L S + L+++GPEGDF+E+EV K + AG V LG RLR ETA + TL
Sbjct: 171 LKDILRSGED---ALVMIGPEGDFSEEEVAKAIAAGFQPVSLGKSRLRTETAALVACHTL 227
Query: 280 ML 281
L
Sbjct: 228 NL 229
>gi|410628840|ref|ZP_11339558.1| 16S rRNA (uracil1498-N3)-methyltransferase [Glaciecola mesophila
KMM 241]
gi|410151844|dbj|GAC26327.1| 16S rRNA (uracil1498-N3)-methyltransferase [Glaciecola mesophila
KMM 241]
Length = 242
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 102/221 (46%), Gaps = 16/221 (7%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
H+ VLR V LFNG G G + ID + V D KL + + +V
Sbjct: 27 HVANVLRSKVGQPVVLFNGDGNEYSG--EFIDVSKRKVRVQIDAKLSMSLESPLSVHLGQ 84
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW+++K ELG +TPL+TE K+ + + + + I +A
Sbjct: 85 GVSRGDRMDWVLQKSVELGVTEITPLITERC--GVKLDEQRWQKKHAQWQKIIIAACEQC 142
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSG----LIIVG 238
G+ + +L+ PM V+QS A T A S R+ + G +++G
Sbjct: 143 GRNVLP-ILHMPMDFQS---WVNQSTQAL----RLTLHPRAQKSFRHINVGKDGVRLLIG 194
Query: 239 PEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
PEG F+++E+ + + G V LGP LR ETA I ++ L
Sbjct: 195 PEGGFSDQELYQTEQGGFQTVQLGPRVLRTETAAITAISAL 235
>gi|421165282|ref|ZP_15623620.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
ATCC 700888]
gi|421172140|ref|ZP_15629920.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
CI27]
gi|404538367|gb|EKA47910.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
CI27]
gi|404542346|gb|EKA51667.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
ATCC 700888]
Length = 240
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 101/216 (46%), Gaps = 10/216 (4%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +VLR +T D V+LF+G G G + + + + V E + + +
Sbjct: 26 YIGRVLRHATGDAVQLFDGSGREYLGELVEVGKKNVRVELRE--QFAGQPDSPLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TP+++E ++ D ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVAEITPIVSER--CEVRLKDERADKRLQHWRQVAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G R +++PP+ ++ L +L V A PL + + SR +VGPEG
Sbjct: 142 G-RSSLPLIHPPLALEDWL-RGRDDELRLVLHPVAAPLASHVPPSRLA----FLVGPEGG 195
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
++ EV + AG A LGP LR ETA + LA
Sbjct: 196 LSDAEVEQAKAAGFHAARLGPRVLRTETAPVVALAV 231
>gi|85708013|ref|ZP_01039079.1| hypothetical protein NAP1_02220 [Erythrobacter sp. NAP1]
gi|85689547|gb|EAQ29550.1| hypothetical protein NAP1_02220 [Erythrobacter sp. NAP1]
Length = 253
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 109/242 (45%), Gaps = 19/242 (7%)
Query: 45 PRFFSQ-----GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PR F + G I +EG++ ++ KV+R+S D V L + G + ++++ +D
Sbjct: 13 PRLFVEDELGDGRIFALEGNQAHYLGKVMRVSPGDTVILCDNITGEWAARVGQVEKRRVD 72
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
+ + L+ P+ +++ LK R D+++EK TELG+ + P++T R +
Sbjct: 73 LTVTDHLR---PRGEVPDLWLCPALLKKDRFDFVLEKATELGSARIQPMITR-----RCV 124
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
D N I + R + P+K+D LL + F A E
Sbjct: 125 ADK----LNMERARIIATEAAEQCARTALPDIAEPVKLDALLADWPSERAIFFADEEGGE 180
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKI-VEAGATAVGLGPHRLRVETATIALLAT 278
A + +E I++GPEG F + E I A A+ LGP LR ETA IA L+
Sbjct: 181 H-AADAFCFHEGPAAILIGPEGGFDDAERAAIRAHPQARAISLGPRILRGETAAIAALSV 239
Query: 279 LM 280
M
Sbjct: 240 WM 241
>gi|319901365|ref|YP_004161093.1| hypothetical protein Bache_1502 [Bacteroides helcogenes P 36-108]
gi|319416396|gb|ADV43507.1| protein of unknown function DUF558 [Bacteroides helcogenes P
36-108]
Length = 232
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 105/258 (40%), Gaps = 47/258 (18%)
Query: 47 FFSQGGIVRVE--GDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE 104
F++ +R E +E H +VLRL T D V L +G G I V +E
Sbjct: 4 FYTPDIEIRSELPEEEAAHAIRVLRLQTGDEVMLTDGNGNFYRAEISTATGKRCSVKIIE 63
Query: 105 DLKLVLPQHTQWN---VFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGD 161
LPQ WN A T R +W EK TE+G +T
Sbjct: 64 ----TLPQEPLWNGHLHIAMAPTKNMDRTEWFAEKATEIGFDELT--------------- 104
Query: 162 NGFLSCNFYYGFIANSAFVYGGQRLHEMVLNP-PMKIDGLLPLVSQ------------SK 208
FL+C F + V +R+ +++++ + LP +++
Sbjct: 105 --FLNCRF------SERKVIKTERISKILISAIKQSLKARLPKLNEMTDFNNFITRPFEG 156
Query: 209 LAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRV 268
F+A + R L+++GPEGDF+E+EV K ++ G + LG RLR
Sbjct: 157 QKFIAHCHEDEKLLLKEQIRKGEDALVLIGPEGDFSEEEVKKALKNGFIPISLGKSRLRT 216
Query: 269 ETATIALLATLMLCSDSQ 286
ETA AL+A +L +Q
Sbjct: 217 ETA--ALVACHILNLQNQ 232
>gi|294673777|ref|YP_003574393.1| hypothetical protein PRU_1064 [Prevotella ruminicola 23]
gi|294472516|gb|ADE81905.1| conserved hypothetical protein TIGR00046 [Prevotella ruminicola 23]
Length = 231
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 91/239 (38%), Gaps = 35/239 (14%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
DE H +VLRL + D + L +G G + LE L PQ QW
Sbjct: 13 DEAMHAMRVLRLKSGDELFLMDGVGNYFRAQVTVAATHHCYYEILEKL----PQEPQWKG 68
Query: 119 FAAFG---TLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
G T R +W++EK TE+G V+ FL+C F +
Sbjct: 69 HLHLGIAPTKMMDRMEWMMEKATEVGIDEVS-----------------FLNCKFSERRLV 111
Query: 176 N--------SAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSS 227
+A V + + +N + + L Q + E P V
Sbjct: 112 KLVRLDKIVTAAVKQSHKAWKPQVNEMVHFNHFLEQPIQGRKYIAHCYEEVPRVELFDEL 171
Query: 228 RNESS---GLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCS 283
R S ++VGPEGDF+ EV V AG +V LG RLR ETA +A + + L
Sbjct: 172 RKPSDSQDATVLVGPEGDFSIDEVKAAVAAGWVSVSLGSARLRTETAGLAAVMMMQLAQ 230
>gi|355646712|ref|ZP_09054585.1| hypothetical protein HMPREF1030_03671 [Pseudomonas sp. 2_1_26]
gi|354828432|gb|EHF12554.1| hypothetical protein HMPREF1030_03671 [Pseudomonas sp. 2_1_26]
Length = 240
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 101/216 (46%), Gaps = 10/216 (4%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +VLR +T D V+LF+G G G + + + + V E + + +
Sbjct: 26 YIGRVLRHATGDAVQLFDGSGREYLGELVEVGKKNVRVELRE--QFAGQPDSPLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TP+++E ++ D ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVAEITPIVSER--CEVRLKDERADKRLQHWRQVAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G R +++PP+ ++ L +L V A PL + + SR +VGPEG
Sbjct: 142 G-RSSLPLIHPPLALEDWL-RGRDDELRLVLHPVAAPLASHVPPSRLA----FLVGPEGG 195
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
++ EV + AG A LGP LR ETA + LA
Sbjct: 196 LSDAEVEQAQAAGFHAARLGPRVLRTETAPVVALAV 231
>gi|262276809|ref|ZP_06054602.1| RNA methyltransferase, RsmE family [alpha proteobacterium HIMB114]
gi|262223912|gb|EEY74371.1| RNA methyltransferase, RsmE family [alpha proteobacterium HIMB114]
Length = 234
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 105/225 (46%), Gaps = 16/225 (7%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQH 113
+ + GD++ +++ V+R + LFN G + RI + LE ++ +
Sbjct: 18 INIIGDDYHYLSNVMRCEVGSDIFLFNENNG---EYLCRIIEKNKKKLILEVIQKAEYEK 74
Query: 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGF 173
Q N+ F K + D L++KCTE+G +S P++++ H ++RK L+ N
Sbjct: 75 IQNNINLIFCPPKSHKLDTLIQKCTEIGVKSFIPVISD-HTENRK------LNLNRIRKI 127
Query: 174 IANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSG 233
I S V +L+ + P+ D L Q F A ++ ++ L + E++
Sbjct: 128 IKES--VEQSNQLNIPHIFDPISFDQFLN--QQKYKVFFADIQSDINLSKLKINLKENNS 183
Query: 234 LIIVGPEGDFTEKEVNKI-VEAGATAVGLGPHRLRVETATIALLA 277
I++GPEGDF+ KE+ + + LG LR ETA IA L
Sbjct: 184 -ILIGPEGDFSSKELKTLRSNNNFISFSLGKRILRSETAAIASLV 227
>gi|412985996|emb|CCO17196.1| predicted protein [Bathycoccus prasinos]
Length = 351
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 108/270 (40%), Gaps = 52/270 (19%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVV-----ALEDLKLVLPQHTQWN 117
H K LRL +D +E+ +G+G + + ID D + E+ P +W+
Sbjct: 85 HALKSLRLRVDDAIEVCDGQGRVKRAQLVDIDSRRTDATFEMMSSKEENFHPFPGRVKWD 144
Query: 118 VFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANS 177
V A +KG R+ LVEK TEL +++ PLLT +S KIG N G ++
Sbjct: 145 VVCACAGIKGERSSVLVEKLTELNGRALVPLLTS---RSGKIGSASASGKNASKGGSSSD 201
Query: 178 ----------------------------AFVYGGQ--RLHEMVLNPPMKIDGLLP--LVS 205
A Q R H + P+ + +
Sbjct: 202 NSIGRSKRRKNEEEEDEETGKKLRWQRVALAASKQSLRAHVFGIEKPVNFNDFVSSTYFR 261
Query: 206 QSKLAFVAIAEATPLVTALSSSR-----------NESSGLIIVGPEGDFTEKEVNKIVEA 254
++ FVA A L + E GLII+GPEGDF + E+ +++
Sbjct: 262 EATCRFVAAAGGADFAEKLRGVKENVLKDDDEITKERYGLIIIGPEGDFDDDEMKVLMDT 321
Query: 255 GATAVGLGPHRLRVETATIALLATLMLCSD 284
T + LG RLR ETA IA L+ + ++
Sbjct: 322 CET-ISLGDLRLRTETAAIASLSIAQMITN 350
>gi|421481750|ref|ZP_15929333.1| 16S ribosomal RNA methyltransferase RsmE [Achromobacter piechaudii
HLE]
gi|400200065|gb|EJO33018.1| 16S ribosomal RNA methyltransferase RsmE [Achromobacter piechaudii
HLE]
Length = 243
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 103/231 (44%), Gaps = 34/231 (14%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQW--NVFA 120
H +VLRL + V LFNG+GG ++ + G L P+ + +
Sbjct: 27 HALRVLRLKAGEYVILFNGQGGEYPAVLEIDGKAGF-----AQLGEFNPREAELAGRITL 81
Query: 121 AFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNFYYGFIANS 177
G G + DW+VEK ELGA V+P+ + L L ++ ++ IA S
Sbjct: 82 VQGLPTGDKMDWVVEKAVELGAARVSPIAAQRSVLQLSGARLDKR-----VAHWQRIAQS 136
Query: 178 AFVYGGQRLHEMVLNPPMK--------IDGLLPLVSQSKLAFVA-IAEATPLVTALSSSR 228
A G R M ++ P +DGL L +A A P V ALS
Sbjct: 137 AAEQCG-RNRLMKVDAPQSLADWLAEPVDGLRLLCHPDAADDLAGKLRAEPDVQALS--- 192
Query: 229 NESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
++VGPEG +++KE+ + +AG AV GP LR ETA +ALL+ +
Sbjct: 193 ------LLVGPEGGWSDKELEQARQAGVQAVRFGPRVLRTETAGLALLSAV 237
>gi|229260084|ref|YP_001118455.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia
vietnamiensis G4]
gi|387901309|ref|YP_006331648.1| ribosomal RNA small subunit methyltransferase E [Burkholderia sp.
KJ006]
gi|387576201|gb|AFJ84917.1| Ribosomal RNA small subunit methyltransferase E [Burkholderia sp.
KJ006]
Length = 255
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 102/246 (41%), Gaps = 35/246 (14%)
Query: 44 IPRFFSQ-----GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF + G + + D H +VLRL D + LF+G GG + ID+
Sbjct: 10 VPRFFVEATLRAGATLALPADVARH-AQVLRLEPGDALVLFDGSGGQYRAQLVEIDKRN- 67
Query: 99 DVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
AL L P + + V A G G + DW++EK ELG +V PL T +
Sbjct: 68 ---ALAQLDAFEPVEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLTTARGV-V 123
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLN----------PPMKIDGLLPLV-- 204
+ G+ + G + S G R+ E+ P DG L L+
Sbjct: 124 KLSGERADKRVAHWRGVVRASCEQCGRNRVPEVAAVRGFGAWLDALPAAPADGELRLLLS 183
Query: 205 SQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPH 264
++ + F ++ + P T +++GPEG + E N G TA+ LGP
Sbjct: 184 PRASIPFASLPDQPPAATVT----------LLIGPEGGLSPDEENAARAHGFTALSLGPR 233
Query: 265 RLRVET 270
LR ET
Sbjct: 234 VLRTET 239
>gi|393781324|ref|ZP_10369524.1| RsmE family RNA methyltransferase [Bacteroides salyersiae
CL02T12C01]
gi|392676908|gb|EIY70329.1| RsmE family RNA methyltransferase [Bacteroides salyersiae
CL02T12C01]
Length = 230
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 102/245 (41%), Gaps = 51/245 (20%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWN- 117
+E H T+VLRL D + L +GKG I V +E +PQ W+
Sbjct: 18 EEAQHCTRVLRLGIGDEITLTDGKGNFYRAEITAATNKRCLVKLIE----TIPQAPLWSG 73
Query: 118 --VFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
A T R +W EK TE+G +T FL+C F
Sbjct: 74 HLHIAMAPTKNMDRNEWFAEKATEIGFDELT-----------------FLNCRF------ 110
Query: 176 NSAFVYGGQRLHEMV--------------LNPPMKIDGLLP--LVSQSKLAFVAIAEATP 219
+ V +R+ +++ LN ++ D + Q +A E
Sbjct: 111 SERKVIKTERIEKILVSAMKQSLKARLPKLNEMVEFDKFIAQDYPGQKFIAHCYEGEKPL 170
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
L L ++ L+++GPEGDF+E+EV K + G + LG RLR ETA AL+AT+
Sbjct: 171 LKDILEPGKD---ALVLIGPEGDFSEEEVKKAIGKGFRPISLGKSRLRTETA--ALVATM 225
Query: 280 MLCSD 284
++ SD
Sbjct: 226 VINSD 230
>gi|375094529|ref|ZP_09740794.1| RNA methyltransferase, RsmE family [Saccharomonospora marina XMU15]
gi|374655262|gb|EHR50095.1| RNA methyltransferase, RsmE family [Saccharomonospora marina XMU15]
Length = 250
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 100/216 (46%), Gaps = 5/216 (2%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQ 115
++G+E H V R+ +R+ L +G+GG+ E ++ + + L + L Q
Sbjct: 22 LDGEEARHAVTVRRIRQGERLALCDGEGGIAECVVESVRPGRAPSLELLVARRRLEQPPA 81
Query: 116 WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
V A +KG R + VE TE GA +V P + + G G + +
Sbjct: 82 LRVTVAQALIKGDRGELAVELATEAGADAVVPWRAARSIARWEEGARGAKALGRWRNAAR 141
Query: 176 NSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALS-SSRNESSGL 234
+A R+ V++ P+ DGL LVS++ A V A A + + R E +
Sbjct: 142 AAAKQARRGRVP--VVSEPVDTDGLAHLVSRAAGAVVLDAAAARTLAEVELPQRGEL--V 197
Query: 235 IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
++VGPEG TE+E + + AGAT V LGP LR T
Sbjct: 198 LVVGPEGGVTEEEADTLAAAGATRVRLGPTVLRAST 233
>gi|407693893|ref|YP_006818681.1| hypothetical protein B5T_00049 [Alcanivorax dieselolei B5]
gi|407251231|gb|AFT68338.1| hypothetical protein B5T_00049 [Alcanivorax dieselolei B5]
Length = 241
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 102/215 (47%), Gaps = 16/215 (7%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVAL--EDLKLVLPQHTQWNVFA 120
H+ +VLR+S + V LFNG+GG + +D+ ++V+ L + ++ P V
Sbjct: 28 HIARVLRMSKGEEVVLFNGRGGEWRARLVAVDKKTVEVLPLAHDPVERTPP----LAVTL 83
Query: 121 AFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFV 180
+KG R D+ ++K TELG + +L + R G+ + ++
Sbjct: 84 GLPMIKGERMDYAIQKATELGVARIQ-ILDTARCEVRLKGERQEKKREHWRQVAISACEQ 142
Query: 181 YGGQRLHEMVLNPPMK--IDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVG 238
G R E++ P+ + G LP L +A + P T S+++E + ++ G
Sbjct: 143 CGLNRPPEILTAMPLTNWLAGPLP-----GLKLIAHPGSEPFPTERLSTQSELT--LLTG 195
Query: 239 PEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
PEG F + E++K EAG +A LG LR ETA +
Sbjct: 196 PEGGFDDDELDKAFEAGFSAFALGSRVLRAETAPV 230
>gi|409395751|ref|ZP_11246812.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas sp. Chol1]
gi|409119688|gb|EKM96064.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas sp. Chol1]
Length = 238
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 102/216 (47%), Gaps = 11/216 (5%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +VLRLS V+LF+G G G + + + + V + +L + +
Sbjct: 26 YIGRVLRLSNGSAVQLFDGSGQEYLGELVEVGKKQVRVELRQ--QLAGQPESPLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TPL++E ++ D ++ IA SA
Sbjct: 84 GLSRGERMDWAIQKATELGVAQITPLISERC--EVRLNDERADKRLAHWRQIAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G+ + + +PP + LP+ ++ KL P+ L+S + ++GPEG
Sbjct: 142 GRSVVPTI-HPPQLLGDWLPVEAELKLVL------HPVAAPLTSHAQPRTLAFLIGPEGG 194
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
+E EV + +AG A LGP LR ETA + L+
Sbjct: 195 LSEHEVEQAQQAGFQAARLGPRVLRTETAPVVALSV 230
>gi|221202461|ref|ZP_03575492.1| conserved hypothetical protein TIGR00046 [Burkholderia multivorans
CGD2M]
gi|221208082|ref|ZP_03581087.1| conserved hypothetical protein TIGR00046 [Burkholderia multivorans
CGD2]
gi|221171985|gb|EEE04427.1| conserved hypothetical protein TIGR00046 [Burkholderia multivorans
CGD2]
gi|221177634|gb|EEE10050.1| conserved hypothetical protein TIGR00046 [Burkholderia multivorans
CGD2M]
Length = 255
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 102/236 (43%), Gaps = 15/236 (6%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF + + + D H +VLRL D + LF+G GG + ID+ G
Sbjct: 10 VPRFFVDTALRADATLALPADVARH-AQVLRLQPGDPLALFDGTGGQYRARLVEIDKRG- 67
Query: 99 DVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
AL + P + + V A G G + DW++EK ELG +V PL T +
Sbjct: 68 ---ALAQIDAFDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGV-V 123
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEM--VLNPPMKIDGLLPLVSQSKLAFVAI 214
+ G+ + G + S G R+ ++ V +DGL P +L +
Sbjct: 124 KLSGERAEKRVAHWRGVVRASCEQCGRNRVPDVAAVRAFAAWLDGLAPAPVDGELRLLLS 183
Query: 215 AEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
A+ +L + + +++GPEG + +E G TA+ LGP LR ET
Sbjct: 184 PRASIPFASLPDAPPAAPVTLLIGPEGGLSPEEEAAARARGFTALSLGPRVLRTET 239
>gi|443472228|ref|ZP_21062257.1| Ribosomal RNA small subunit methyltransferase E [Pseudomonas
pseudoalcaligenes KF707]
gi|442902570|gb|ELS28086.1| Ribosomal RNA small subunit methyltransferase E [Pseudomonas
pseudoalcaligenes KF707]
Length = 239
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 97/216 (44%), Gaps = 10/216 (4%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +VLRL+ D V+LF+G G G + + + + V E + + V
Sbjct: 26 YIGRVLRLAAGDAVQLFDGSGQEFRGELVEVGKKRVQVELREAFAGL--AESPLRVHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELGA +TPL++E ++ D ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGAVEITPLVSERC--EVRLKDERADKRLAHWRQVAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G+ + ++ P D + + KL P+ L+S + ++GPEG
Sbjct: 142 GRSVLPVIHAPVALADWQRQVEADLKLVL------HPVAAPLASHARPGTLAFLIGPEGG 195
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
++ EV AG A LGP LR ETA + L+
Sbjct: 196 LSDTEVESAKAAGFHAARLGPRVLRTETAPVVALSV 231
>gi|429749008|ref|ZP_19282162.1| RNA methyltransferase, RsmE family [Capnocytophaga sp. oral taxon
332 str. F0381]
gi|429169307|gb|EKY11066.1| RNA methyltransferase, RsmE family [Capnocytophaga sp. oral taxon
332 str. F0381]
Length = 243
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 96/227 (42%), Gaps = 13/227 (5%)
Query: 57 EGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQW 116
+ +E H+ KVLRL D + + NGKG L +G + +V + P+ +
Sbjct: 19 DKEESQHIAKVLRLQQGDTLHITNGKGLLFQGQLTFASPKQCEVAITQCTPQ--PRRPYY 76
Query: 117 NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIAN 176
T R +W +EK TE+G +TP++ + H + + F +
Sbjct: 77 LHLVVAPTKMNERYEWFLEKATEIGVDEITPIICQ-HSERTVLKIERFQ--KIILSAMKQ 133
Query: 177 SAFVYGGQRLHEMVLNPPMKI-DGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSG-L 234
S Y Q LNPP+K D L + F+A E T N++ +
Sbjct: 134 SLQCYLPQ------LNPPIKSSDFFKQLQPDATAKFIAHCEDTHKQMLSHILPNDAQRIM 187
Query: 235 IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
I++GPEGDF+ E+ + + LG RLR ETA I T+ +
Sbjct: 188 ILIGPEGDFSSDEITTALAQHFQPISLGDTRLRTETAAIVACHTITV 234
>gi|146284257|ref|YP_001174410.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas stutzeri
A1501]
gi|145572462|gb|ABP81568.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
Length = 238
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 100/216 (46%), Gaps = 11/216 (5%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +VLRLS V+LF+G G G + + + + V E L +P+ + +
Sbjct: 26 YIGRVLRLSAGSAVQLFDGSGAEYRGELLEVGKKSVSVELYERLA-GMPE-SPLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TPL++E ++ D ++ IA SA
Sbjct: 84 GLSRGERMDWAIQKATELGVSEITPLISE--RCEVRLNDERADKRLAHWRQIAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G+ + +++ P+ + L + + KL +AE L+S S ++GPEG
Sbjct: 142 GRSVLP-IIHAPVTLRDWLDVEADLKLVLHPVAE------PLASHAKPQSLAFLIGPEGG 194
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
++ EV G LGP LR ETA + L+
Sbjct: 195 LSDSEVELASGQGFLPARLGPRVLRTETAPVVALSV 230
>gi|440748633|ref|ZP_20927885.1| Ribosomal RNA small subunit methyltransferase E [Mariniradius
saccharolyticus AK6]
gi|436483141|gb|ELP39217.1| Ribosomal RNA small subunit methyltransferase E [Mariniradius
saccharolyticus AK6]
Length = 238
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 107/246 (43%), Gaps = 29/246 (11%)
Query: 47 FFSQ---GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRID--RTGLDVV 101
FF++ G ++ +E H+ KVLR S +RV +GKG L + IQ + +T L V
Sbjct: 4 FFAENIEGNTFHLDPEESNHLIKVLRKSKGERVSFTDGKGYLYQCVIQDANPKKTKLSVE 63
Query: 102 ALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGD 161
+ + P+ + A T R +W+VEK TE+G ++ + +E +S D
Sbjct: 64 S----RHFTPEEDFYIHLAICPTKNADRMEWMVEKITEIGIHEISLIQSEHSERSMIKLD 119
Query: 162 NGFLSCNFYYGFIANSAFVYGGQRLHEMV--LNPPMKIDGLLPLVSQSKL----AFVAIA 215
+ Q + + LNP M ++ LVS + F+A
Sbjct: 120 R-----------LEKKIIAACKQSVKTRIPKLNPVMPMEK---LVSDHRYDAYERFIAYV 165
Query: 216 EATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIAL 275
+ + + L+++GPEGDF+ KE+ + LG RLR ETA +A
Sbjct: 166 DKENDRHLFEKATVNKAYLVLIGPEGDFSPKELELAFKYHFHPCSLGQSRLRTETAGLAA 225
Query: 276 LATLML 281
+ TL L
Sbjct: 226 VHTLQL 231
>gi|417103734|ref|ZP_11961189.1| hypothetical protein RHECNPAF_3350022 [Rhizobium etli CNPAF512]
gi|327191156|gb|EGE58200.1| hypothetical protein RHECNPAF_3350022 [Rhizobium etli CNPAF512]
Length = 245
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 14/222 (6%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
S G + ++F ++ VLR+ + + LFNG+ G + + R + + A+E +
Sbjct: 16 LSSGAAIEANAEQFNYLANVLRMEADAEILLFNGRDGEWKASLTFPTRKRILLTAIEQTR 75
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
PQ ++ F LK GR D+LV+K E+GA + P++T+ H+Q KI + L
Sbjct: 76 ---PQPLPCDLHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQ-HVQG-KITNLDKLRA 130
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLP-LVSQSKLAFVAIAEATPLVTALSS 226
N A V G + E P+K+ LL + ++ + +A + S
Sbjct: 131 NVVEA--AEQCGVLGIPDVAE-----PVKLSDLLDRWPKERRIIYCDEGDAGQNPLPVLS 183
Query: 227 SRNESSGLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLR 267
+ E ++VGPEG F+E+E ++ TA+ LGP LR
Sbjct: 184 AIREKHLALLVGPEGGFSEEERARLRSLDFVTAIPLGPRILR 225
>gi|170719665|ref|YP_001747353.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida W619]
gi|169757668|gb|ACA70984.1| protein of unknown function DUF558 [Pseudomonas putida W619]
Length = 239
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 101/216 (46%), Gaps = 10/216 (4%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +VLR++ D V+LF+G G G + + + + V D + + ++
Sbjct: 26 YIGRVLRMAPGDAVQLFDGSGQEYLGQLLEVGKKTVRVSL--DQAVAGQAESPLHIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELGA +TP+++E ++ D ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGANEITPIVSERC--EVRLKDERADKRLAHWRQVAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G+ + ++ P D + + KL +AE L+S + ++GPEG
Sbjct: 142 GRSILPIIRAPVTLGDWIKGSDADLKLVLHPVAEP------LTSHDKPARLAFLIGPEGG 195
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
+E EV++ AG A LGP LR ETA + L+
Sbjct: 196 LSEAEVDQAKGAGFQAARLGPRVLRTETAPVVALSV 231
>gi|409195387|ref|ZP_11224050.1| RsmE family RNA methyltransferase [Marinilabilia salmonicolor JCM
21150]
Length = 238
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 99/233 (42%), Gaps = 16/233 (6%)
Query: 45 PRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE 104
P + GG++ E E H KVLR D++ + +G+G + I V +E
Sbjct: 7 PEILTNGGVLNEE--ESKHCIKVLRHKAGDQIYVIDGRGTRVLCSITEASPKACRV-KIE 63
Query: 105 DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGF 164
+ P ++ A T R +W +EK TELG +TPLL H R+
Sbjct: 64 QKETGQPDAPACHIAIA-PTKSIDRFEWFLEKSTELGIDRITPLLC--HQSERRQIKLPR 120
Query: 165 LSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIA---EATPLV 221
L +A RL + +I L K F+A E L+
Sbjct: 121 LD-------RVITAATKQCLRLWRPSIAELTEIKKFLDAPHPEKYKFIAHCMEDERKELI 173
Query: 222 TALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274
T L ++ + LI++GPEGDF +EV ++ G V +G +RLR ETA IA
Sbjct: 174 TELKKNKAKEDILILIGPEGDFAPEEVKMAIKNGFIPVVMGKNRLRTETAGIA 226
>gi|260062552|ref|YP_003195632.1| 16S ribosomal RNA methyltransferase RsmE [Robiginitalea biformata
HTCC2501]
gi|88784119|gb|EAR15289.1| hypothetical protein RB2501_13214 [Robiginitalea biformata
HTCC2501]
Length = 235
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 98/226 (43%), Gaps = 12/226 (5%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
+E H+ KVLR D++ + NGKG L I + LE K P+ +V
Sbjct: 21 EESRHIVKVLRKKAGDQLHITNGKGYLFVAEILEANPERCMGKLLETRKF-HPKMYSLHV 79
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSA 178
A T K R +W +EK TE+G +TP++ + + RK+ + A
Sbjct: 80 AVA-PTKKTDRFEWFLEKATEIGIDRITPVICQ-RSERRKLPMERMQR-------VVQEA 130
Query: 179 FVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVG 238
+ R + L P+ + L Q L F+A E + + +I++G
Sbjct: 131 -MKQSLRTYLPELEEPVALREFLER-EQPVLKFIAHCEEDEKMDLKRRVAADKDVIILIG 188
Query: 239 PEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSD 284
PEGDFT E+ E G V LG +RLR ETA + T+ L ++
Sbjct: 189 PEGDFTHDEIQMACEKGFIPVSLGEYRLRTETAALVACTTVNLINN 234
>gi|406663219|ref|ZP_11071285.1| Ribosomal RNA small subunit methyltransferase E [Cecembia
lonarensis LW9]
gi|405552736|gb|EKB48087.1| Ribosomal RNA small subunit methyltransferase E [Cecembia
lonarensis LW9]
Length = 238
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 104/235 (44%), Gaps = 22/235 (9%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRI--DRTGLDVVALEDLKLVLPQH 113
+E +E H+ KVLR D+V +G G L G I +T + + D + +PQ
Sbjct: 16 LEQEESKHLIKVLRKKLGDKVNFTDGNGCLFLGTITDASPKKTKIQI----DQRHFIPQD 71
Query: 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTEL----HLQSRKIGDNGFLSCNF 169
+ A T R +W+VEK TE+G +T +++E +L+ ++ +C
Sbjct: 72 DYFIHLAICPTKNAERMEWMVEKATEIGVHEITFMVSEHSERPNLKMDRLEKKLIAACK- 130
Query: 170 YYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRN 229
+ + + E+V++ Q +A+V L + R
Sbjct: 131 -QSLKTRFPKINPIRDMQELVMDKTFD-------EYQRFIAYVDKENDRHLFEKVEKDR- 181
Query: 230 ESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSD 284
+ +I++GPEGDF+++E+ + LG RLR ETA +A + TL L ++
Sbjct: 182 --AYIILIGPEGDFSDQEIQLAFDHHFLPCSLGKSRLRSETAGLAAIHTLQLVNN 234
>gi|302391394|ref|YP_003827214.1| hypothetical protein [Acetohalobium arabaticum DSM 5501]
gi|302203471|gb|ADL12149.1| protein of unknown function DUF558 [Acetohalobium arabaticum DSM
5501]
Length = 248
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 109/240 (45%), Gaps = 12/240 (5%)
Query: 45 PRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE 104
P + ++G VR+ GD+ H+TK LRL D + + +GKG + I TG +V L
Sbjct: 8 PDYITEGQ-VRITGDDVKHITKSLRLGPGDEISVADGKG---RRYMVEIAETGNGLV-LG 62
Query: 105 DLKLVLPQHTQWNVFAAF--GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDN 162
++K + V G K + D +VEKCTELG V P T+ + K+ +
Sbjct: 63 NIKEEFRSKVEPEVEVTLLQGLPKSRKMDLIVEKCTELGIDKVIPAETKRSVV--KLKPS 120
Query: 163 GFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAE--ATPL 220
+ A +A +R + M + L + + L + E + +
Sbjct: 121 KAKRRRKRWQRKAEAA-AKQSKRARIPAVGQLMNLTDLSEIATDYDLILLPWEEESTSSV 179
Query: 221 VTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
L S+ LII+GPEG FT +EV + GA +V LGP LR ETA + L+ ++
Sbjct: 180 KEVLGSAAAIEKVLIIIGPEGGFTAEEVETAKQLGAKSVSLGPRILRTETAGLTTLSLVL 239
>gi|410614781|ref|ZP_11325819.1| 16S rRNA (uracil1498-N3)-methyltransferase [Glaciecola psychrophila
170]
gi|410165630|dbj|GAC39708.1| 16S rRNA (uracil1498-N3)-methyltransferase [Glaciecola psychrophila
170]
Length = 215
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 98/216 (45%), Gaps = 8/216 (3%)
Query: 64 MTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAFG 123
M VLR V LFNG G E Q + VV D K+ + + ++ G
Sbjct: 1 MANVLRAKAGQAVVLFNGDGN--EYSAQLFEVAKRKVVVHIDSKISISIESPLSIHLGQG 58
Query: 124 TLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGG 183
+G R +W+++K ELG +TPL+TE K+ + + + + +A +A G
Sbjct: 59 ISRGDRMEWVIQKSVELGVSEITPLITERC--GVKLSQDRWSKKHEQWQKLAIAACEQCG 116
Query: 184 QRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDF 243
+ + + P + D + +Q +L AE ++ + +++GPEG F
Sbjct: 117 RNVLPTLHTPRLFADWISSSTNQVRLTLHPRAEKAFRHVSIPPA----GARLLIGPEGGF 172
Query: 244 TEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
+++E+ + + G + LGP LR ETA I ++ L
Sbjct: 173 SDQEIYQTEQNGFQTIQLGPRVLRTETAAITAISAL 208
>gi|393725518|ref|ZP_10345445.1| 16S ribosomal RNA methyltransferase RsmE [Sphingomonas sp. PAMC
26605]
Length = 246
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 103/229 (44%), Gaps = 20/229 (8%)
Query: 45 PRFFSQG----GIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV 100
PR F G +R++G + ++ V+R+ D V+LF+G+ G G + + L +
Sbjct: 13 PRLFVATPLGLGPLRIDGPQAHYLGSVMRMKPGDPVKLFDGQSGEWLGVAASVAKRELIL 72
Query: 101 VALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIG 160
+ L+ T +++ +K GR DW+ EK ELG + P+LT + R G
Sbjct: 73 DVTQQLRE---PETVPDLWLCAAPIKKGRIDWVAEKACELGVARLVPVLTRRTVVDRLNG 129
Query: 161 DNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPL 220
+ + +A G + E L P+K+ LL + F A+ T
Sbjct: 130 ER-------LRAHMIEAAEQCGRTAVPE--LAEPVKLTALLRDWPAERALF--FADETGG 178
Query: 221 VTALSSSR-NESSGLIIVGPEGDFTEKEVNKI-VEAGATAVGLGPHRLR 267
AL + R +S I++GPEG F E E I GA A+GLGP LR
Sbjct: 179 APALGAMRGGAASAAILIGPEGGFDEDERAAIRAVPGAVAIGLGPRILR 227
>gi|329956990|ref|ZP_08297558.1| RNA methyltransferase, RsmE family [Bacteroides clarus YIT 12056]
gi|328523747|gb|EGF50839.1| RNA methyltransferase, RsmE family [Bacteroides clarus YIT 12056]
Length = 232
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 98/233 (42%), Gaps = 47/233 (20%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
+E H +VLRL T D V L +GKG I T + L ++ PQ W+
Sbjct: 18 EEAVHAIRVLRLQTGDEVTLTDGKGNFYRAEIS----TATNKRCLVNILETTPQAPLWSG 73
Query: 119 F---AAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
+ A T R +W EK TE+G +T FL+C F I
Sbjct: 74 YLHIAMAPTKNMDRTEWFAEKATEIGFDELT-----------------FLNCRFSERKII 116
Query: 176 NSAFVYGGQRLHEMVLNP-PMKIDGLLP----------LVSQSKLAFVAIAEA----TPL 220
+ +R+ +++++ + LP +SQS IA PL
Sbjct: 117 KT------ERIAKILVSAIKQSLKARLPRLNEMTDFNKFISQSFNGRKFIAHCYEGEKPL 170
Query: 221 VTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
+ + R L+++GPEGDF+E+EV K +E G + LG RLR ETA +
Sbjct: 171 LKDIV--RKGEDALVLIGPEGDFSEEEVKKAIENGFEPISLGRSRLRTETAAL 221
>gi|430807183|ref|ZP_19434298.1| 16S ribosomal RNA methyltransferase RsmE [Cupriavidus sp. HMR-1]
gi|429500555|gb|EKZ98921.1| 16S ribosomal RNA methyltransferase RsmE [Cupriavidus sp. HMR-1]
Length = 247
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 101/244 (41%), Gaps = 15/244 (6%)
Query: 45 PRFFSQGGI----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRI-DRTGLD 99
PRFF + V D VLRL+ D + LFNG+GG + I R
Sbjct: 3 PRFFVDAALAADTVLELPDAVVRHVHVLRLAPGDAITLFNGQGGSHPATLTEIAKRHASA 62
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
+ D T + V A G G + DWL+EK ELG ++ PL + R
Sbjct: 63 TLGTHDAS---EAETPFAVTLAQGLAGGDKMDWLIEKAVELGVSAIQPLQAARSV-VRLS 118
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
G+ + I + G RL L P ++ L + + A+
Sbjct: 119 GERATKRQAHWQALIEAACEQCGRNRLP--ALAPVANVESWLASAPATAAKLLLSPRASA 176
Query: 220 LVTALSSSRNES---SGL-IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIAL 275
+ L+ + E+ G+ +++GPEG + +E ++ AG V LGP LR ETA +
Sbjct: 177 SLPELAQAEREAWRAGGVTLLIGPEGGLSPEEEDRARRAGFIGVSLGPRILRTETAGLTC 236
Query: 276 LATL 279
LATL
Sbjct: 237 LATL 240
>gi|424843928|ref|ZP_18268553.1| RNA methyltransferase, RsmE family [Saprospira grandis DSM 2844]
gi|395322126|gb|EJF55047.1| RNA methyltransferase, RsmE family [Saprospira grandis DSM 2844]
Length = 238
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 105/233 (45%), Gaps = 25/233 (10%)
Query: 50 QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLV 109
QG +E DEF H K LR D++ LF+G+G I + + + LE +
Sbjct: 10 QGQQAILEEDEFRHACKTLRKKEGDQLHLFDGRGHYYLAQIAKTSKREALLDILEQEERP 69
Query: 110 LPQHTQWNV---FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLS 166
LP W+ A T R +WLVEK E+G ++ L++ + +K+ +
Sbjct: 70 LP----WSFSLHLALAPTKNMDRMEWLVEKAVEVGVNKISLFLSQ-QSERKKVRLDRLQR 124
Query: 167 CNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLA--FVAIAEAT--PLVT 222
IA SA ++ H+ VL +++ + Q K F+A +T PL+
Sbjct: 125 -------IALSA----AKQSHKWVLPEWGELEKFSDFLPQQKAQHRFIAHCHSTDLPLLK 173
Query: 223 ALSSSR--NESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
A + LI++GPEGDF+ EV AG +V LG RLR ETA +
Sbjct: 174 AACPKTIGPKEEILILLGPEGDFSWPEVELAEAAGFRSVSLGHSRLRTETAAL 226
>gi|435854580|ref|YP_007315899.1| RNA methyltransferase, RsmE family [Halobacteroides halobius DSM
5150]
gi|433670991|gb|AGB41806.1| RNA methyltransferase, RsmE family [Halobacteroides halobius DSM
5150]
Length = 253
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 110/230 (47%), Gaps = 16/230 (6%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGG--LIEGCIQRIDRTGLDVVA---LEDLKL 108
V + G + H+T+ LRLS D++ + +G+G L+E + RT +VV +E+++
Sbjct: 16 VLITGSDVGHITRSLRLSAKDKITVADGEGNKYLVE-----LIRTTNEVVEGQIIEEIER 70
Query: 109 VLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCN 168
+ + + K + D +V+KCTELG + P++TE + K+ D
Sbjct: 71 KVESTVEITLIQGVPKRKK-KMDLIVQKCTELGIDKIIPIITERTVV--KLTDKKANKRQ 127
Query: 169 FYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIA-EATPLVTALSSS 227
+ IA A R ++ +K +P V+ LA + E T + +
Sbjct: 128 DRWQKIALEA--AKQSRRAKVPTIAKIKDFAQMPAVASDDLALIPWEDEDTTGIKEVMQE 185
Query: 228 RNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
+N S +I++GPEG F++ EVN+ + G V LG LR ETA I +A
Sbjct: 186 QNVSKVVILIGPEGGFSQSEVNQAKKIGFKPVSLGARILRTETAGITAVA 235
>gi|389796097|ref|ZP_10199153.1| 16S ribosomal RNA methyltransferase RsmE [Rhodanobacter sp. 116-2]
gi|388448737|gb|EIM04717.1| 16S ribosomal RNA methyltransferase RsmE [Rhodanobacter sp. 116-2]
Length = 244
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 96/215 (44%), Gaps = 20/215 (9%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
H+ +VLR++ D + LFNG G I + + +V + K L + + A
Sbjct: 27 HVGRVLRMNPGDPLTLFNGDGHDYAAVILAVGKR--EVAVRVESKQALRNESPLALTLAQ 84
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G + D +V+K TELG + PLLTE + R + +A++ G
Sbjct: 85 GVARGEKMDLIVQKATELGVARIVPLLTE-RSEVRLDAARAEKRLAHWRAVVASACEQSG 143
Query: 183 GQRLHEMVLNPPMKI-------DGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLI 235
RL E+ P+ DG L +LA + A+ +P + GL+
Sbjct: 144 RARLPEVAPALPLAAWLGSLADDGTL------RLALLPEADRSPRQLQFGPA----GGLL 193
Query: 236 IVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
+VGPEG E++V+ + AG + LGP LR ET
Sbjct: 194 VVGPEGGLGERDVDALSAAGFEGLRLGPRILRTET 228
>gi|104783966|ref|YP_610464.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas entomophila
L48]
gi|95112953|emb|CAK17681.1| conserved hypothetical protein [Pseudomonas entomophila L48]
Length = 239
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 101/218 (46%), Gaps = 14/218 (6%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQ--WNVFA 120
++ +VLR++ D V+LF+G G G + + + + V L LP + +V
Sbjct: 26 YIGRVLRMAPGDAVQLFDGSGQEYLGQLLEVGKKTVRV----SLDQALPGQAESSLHVHL 81
Query: 121 AFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFV 180
G +G R DW ++K TELG +TP+++E ++ D ++ +A SA
Sbjct: 82 GQGLSRGERMDWAIQKATELGVNEITPIVSER--CEVRLKDERADKRLAHWRQVAISACE 139
Query: 181 YGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPE 240
G R V++PP+ + + S + L V A PL + +R ++GPE
Sbjct: 140 QCG-RSSVPVIHPPVTLAEWIK-GSDADLKLVLHPVAAPLTSHAKPARLA----FLIGPE 193
Query: 241 GDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
G + EV + AG A LGP LR ETA + L+
Sbjct: 194 GGLNDAEVEQAKAAGFHAARLGPRVLRTETAPVVALSV 231
>gi|86141368|ref|ZP_01059914.1| hypothetical protein MED217_05102 [Leeuwenhoekiella blandensis
MED217]
gi|85831927|gb|EAQ50382.1| hypothetical protein MED217_05102 [Leeuwenhoekiella blandensis
MED217]
Length = 237
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 96/217 (44%), Gaps = 14/217 (6%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE-DLKLVLPQHTQWN 117
DE H+ KVLR T D +++ NG G + I + V LE + LP H
Sbjct: 21 DESKHIVKVLRKRTGDVLDITNGSGNFFKAEIISASPSNCTVKILEVTSEQPLPYHLH-- 78
Query: 118 VFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANS 177
A T R + +EK TE+G ++P++ + H + + I + Y I S
Sbjct: 79 -LAVAPTKLNDRFELFLEKATEIGISEISPIICD-HSERKVIKEE-------RYERIIQS 129
Query: 178 AFVYGGQRLHEMVLNPPMKIDGLLPLVSQ-SKLAFVAIAEATPLVTALSSSRNESSGLII 236
A + + H LN L + F+A E T + + + LI+
Sbjct: 130 A-MKQSLKAHIPKLNEAQSFSDFLETTKTFNGDRFIAHCEETNRFSLKQKLQPKRDVLIL 188
Query: 237 VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
+GPEGDF+ E+ + ++AG + V LG RLR ETA I
Sbjct: 189 IGPEGDFSPSEIEQAIQAGFSPVMLGESRLRTETAAI 225
>gi|255533946|ref|YP_003094318.1| hypothetical protein Phep_4065 [Pedobacter heparinus DSM 2366]
gi|255346930|gb|ACU06256.1| protein of unknown function DUF558 [Pedobacter heparinus DSM 2366]
Length = 234
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 98/216 (45%), Gaps = 10/216 (4%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
+E H T+VLRL T V L +G GGL + I + +++ +E K + ++
Sbjct: 19 EESRHCTRVLRLGTGAVVYLIDGIGGLYKAEITGETKRQVNLRIIEVQKEYHKRRHYLHI 78
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSA 178
A T R +W +EK TE+G + +TP++ + RK+ L+ + +A
Sbjct: 79 AVA-PTKNIDRLEWFLEKATEIGIEEITPVICDR--SERKVVKEDRLN------KVITAA 129
Query: 179 FVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVG 238
Q H LNP + + L + S +A + S I++G
Sbjct: 130 VKQSLQAYHPR-LNPQISLSAFLKQKNDSLKMIAHCVDAAARQYISDVVKPAGSYTILIG 188
Query: 239 PEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274
PEGDFT +E+ +++G + LG RLR ETA +A
Sbjct: 189 PEGDFTGQEIEMALQSGYKPLTLGNTRLRTETAALA 224
>gi|56708314|ref|YP_170210.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
subsp. tularensis SCHU S4]
gi|110670785|ref|YP_667342.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
subsp. tularensis FSC198]
gi|134301732|ref|YP_001121700.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
subsp. tularensis WY96-3418]
gi|187931804|ref|YP_001891789.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
subsp. mediasiatica FSC147]
gi|254370797|ref|ZP_04986802.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis FSC033]
gi|254875134|ref|ZP_05247844.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|379717548|ref|YP_005305884.1| Ribosomal RNA small subunit methyltransferase E [Francisella
tularensis subsp. tularensis TIGB03]
gi|379726152|ref|YP_005318338.1| ribosomal RNA small subunit methyltransferase E [Francisella
tularensis subsp. tularensis TI0902]
gi|385795010|ref|YP_005831416.1| hypothetical protein NE061598_07235 [Francisella tularensis subsp.
tularensis NE061598]
gi|421751510|ref|ZP_16188554.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
subsp. tularensis AS_713]
gi|421753363|ref|ZP_16190359.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
subsp. tularensis 831]
gi|421755898|ref|ZP_16192834.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
subsp. tularensis 80700075]
gi|421757089|ref|ZP_16193976.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
subsp. tularensis 80700103]
gi|421758951|ref|ZP_16195789.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
subsp. tularensis 70102010]
gi|424674272|ref|ZP_18111193.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
subsp. tularensis 70001275]
gi|56604806|emb|CAG45885.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110321118|emb|CAL09268.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis FSC198]
gi|134049509|gb|ABO46580.1| hypothetical protein FTW_0692 [Francisella tularensis subsp.
tularensis WY96-3418]
gi|151569040|gb|EDN34694.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis FSC033]
gi|187712713|gb|ACD31010.1| conserved hypothetical protein [Francisella tularensis subsp.
mediasiatica FSC147]
gi|254841133|gb|EET19569.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282159545|gb|ADA78936.1| hypothetical protein NE061598_07235 [Francisella tularensis subsp.
tularensis NE061598]
gi|377827601|gb|AFB80849.1| Ribosomal RNA small subunit methyltransferase E [Francisella
tularensis subsp. tularensis TI0902]
gi|377829225|gb|AFB79304.1| Ribosomal RNA small subunit methyltransferase E [Francisella
tularensis subsp. tularensis TIGB03]
gi|409087181|gb|EKM87287.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
subsp. tularensis 80700075]
gi|409087377|gb|EKM87475.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
subsp. tularensis 831]
gi|409087462|gb|EKM87558.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
subsp. tularensis AS_713]
gi|409091532|gb|EKM91527.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
subsp. tularensis 70102010]
gi|409092920|gb|EKM92882.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
subsp. tularensis 80700103]
gi|417435075|gb|EKT89999.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
subsp. tularensis 70001275]
Length = 242
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 110/241 (45%), Gaps = 10/241 (4%)
Query: 41 RGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGL-IEGCIQRIDRTGLD 99
RG ++ I + G+ + + VLRL +D +ELFN L + I ID +
Sbjct: 5 RGFFSDISTKTTIFNISGEYYNYFKNVLRLKKSDLIELFNNTDSLQYKTKIITIDNKNIT 64
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
+ ++ + + N++ A +K + +++K TELG ++ P++TE + K
Sbjct: 65 LEVIDKKHISNENNYITNLYQAI--IKSENFELVIQKATELGVNNIYPIITEF--TNHKF 120
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT- 218
NGF + IA + G R+ ++ P+ I+ L + L +A
Sbjct: 121 DKNGFDKKLERWHKIAIAGSEQCG-RVFIPKIHTPIDINDLQMPQNDLNLVLCPYTQAKQ 179
Query: 219 PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
V + SS N + I +GPEG F++KE++K + LG L+ ETA I +L+
Sbjct: 180 DFVQKVKSSTNFN---IFIGPEGGFSDKEMSKFHSNNFYTINLGKRILKAETAPINILSI 236
Query: 279 L 279
+
Sbjct: 237 I 237
>gi|374583201|ref|ZP_09656295.1| RNA methyltransferase, RsmE family [Desulfosporosinus youngiae DSM
17734]
gi|374419283|gb|EHQ91718.1| RNA methyltransferase, RsmE family [Desulfosporosinus youngiae DSM
17734]
Length = 245
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 104/235 (44%), Gaps = 21/235 (8%)
Query: 59 DEFW-------HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLP 111
D FW H+ +VLRLS D V ++ G I +I+ + L + +
Sbjct: 12 DVFWLRDAEREHLVRVLRLSPGDLVVGYDNTGKEYTSVIVKIEDKSVTCRILSTDQPDVE 71
Query: 112 QHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCN 168
HT +VF G KG + DW+++K TELG + PL + +H++ +K D
Sbjct: 72 AHT--SVFMVAGLSKGEKMDWVIQKGTELGMAGLIPLRAKRSIVHIEGKKARDR-----V 124
Query: 169 FYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAE--ATPLVTALSS 226
+ I++ A R+ E ++ L L+ + + E + L T L
Sbjct: 125 VRWQKISSEAS-KQSHRVQEPEISEVCDWKDLKALLPEDTQWLIPYEEEKSQRLSTVLGM 183
Query: 227 SRNESSGLIIVGPEGDFTEKEVNKIVEA-GATAVGLGPHRLRVETATIALLATLM 280
+ +I+GPEG F E EV E GA +V LGP LR ETA +A L ++
Sbjct: 184 MNGKHPIAVIIGPEGGFEETEVAWARENLGAQSVSLGPRILRTETAALAALTMVL 238
>gi|312864411|ref|ZP_07724644.1| RNA methyltransferase, RsmE family [Streptococcus downei F0415]
gi|311100132|gb|EFQ58343.1| RNA methyltransferase, RsmE family [Streptococcus downei F0415]
Length = 248
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 107/236 (45%), Gaps = 17/236 (7%)
Query: 57 EGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVV-ALEDLKLVLPQHTQ 115
+ D HM +V+RL +D+V L G + +D +++ LED + LP
Sbjct: 18 DKDTLKHMFQVMRLKADDKVTLVFDDGIKRLARVLNVDSQTFEILQGLED-NVELPV--- 73
Query: 116 WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNFYYG 172
+V A G KG + DWL +K TELGA ++ + + +K+ G
Sbjct: 74 -SVTIASGFPKGDKLDWLTQKATELGADAIWAFPADWSVVKWDGKKLAKKEDKLAKIALG 132
Query: 173 FIANSAFVYGGQRLHEMVLNPPMK-IDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNES 231
S RL ++ L K + LP + LA+ A+A L T SS R
Sbjct: 133 AAQQSK----RNRLPQVKLFEKKKDLLKQLPDFDKIFLAYEESAKAGELSTLASSLRQSQ 188
Query: 232 SG---LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSD 284
SG L I GPEG + +E+ + ++GA VGLGP +R ETA + L+ + ++
Sbjct: 189 SGDKLLFIFGPEGGISPQELAEFEKSGAIPVGLGPRIMRAETAPLYALSAVSFYTE 244
>gi|118497856|ref|YP_898906.1| 16S ribosomal RNA methyltransferase RsmE [Francisella novicida
U112]
gi|194323829|ref|ZP_03057605.1| conserved hypothetical protein [Francisella novicida FTE]
gi|385793246|ref|YP_005826222.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|118423762|gb|ABK90152.1| conserved protein of unknown function [Francisella novicida U112]
gi|194322193|gb|EDX19675.1| conserved hypothetical protein [Francisella tularensis subsp.
novicida FTE]
gi|332678571|gb|AEE87700.1| Ribosomal RNA small subunit methyltransferase E [Francisella cf.
novicida Fx1]
Length = 242
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 110/241 (45%), Gaps = 10/241 (4%)
Query: 41 RGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGL-IEGCIQRIDRTGLD 99
RG ++ I + G+ + + VLRL +D +ELFN L + I ID +
Sbjct: 5 RGFFSDISTKTTIFNISGEYYNYFKNVLRLKKSDLIELFNNNDSLQYKTKIIAIDNKNIT 64
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
+ ++ + + N++ A +K + +++K TELG ++ P++TE + K
Sbjct: 65 LEVIDKKHISNENNYITNLYQAI--IKSENFELVIQKATELGVNNIYPIITEF--TNHKF 120
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT- 218
NGF + IA + G R+ ++ P+ I+ L + L +A
Sbjct: 121 DKNGFDKKLERWHKIAIAGSEQCG-RVFIPKIHTPIDINDLQMPQNDLNLVLCPYTQAKQ 179
Query: 219 PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
V + SS N + I +GPEG F++KE++K + LG L+ ETA I +L+
Sbjct: 180 DFVQKVKSSTNFN---IFIGPEGGFSDKEMSKFHSNNFYTINLGKRILKAETAPINILSI 236
Query: 279 L 279
+
Sbjct: 237 I 237
>gi|329851437|ref|ZP_08266194.1| RNA methyltransferase, RsmE family protein [Asticcacaulis
biprosthecum C19]
gi|328840283|gb|EGF89855.1| RNA methyltransferase, RsmE family protein [Asticcacaulis
biprosthecum C19]
Length = 248
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 106/237 (44%), Gaps = 20/237 (8%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
F++G V + D+ ++ V+RLS +D V +FNG+ G R+ G V L+ ++
Sbjct: 13 FAEGLSVILNPDQSRYLAAVMRLSVDDTVSIFNGRDG---EWGARLSEVGKKAVKLDLIE 69
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
PQ T A +K +++VEK TELGA ++ LLT + +S
Sbjct: 70 QTRPQPTGQGPILAVALIKRSALEYIVEKATELGAGTIQ-LLTTRRTNASHTNVERLVS- 127
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAF-------VAIAEATPL 220
IA + +RL + P+K+D L + +L F E PL
Sbjct: 128 ------IAKES-AEQTERLDVPEILAPVKLDRFLAAAAFDRLIFGDENSTHEGTRETLPL 180
Query: 221 VTALSSSRNESSGLIIVGPEGDFTEKEVNKIV-EAGATAVGLGPHRLRVETATIALL 276
+ AL ++ +I++GPEG F + E + V LGP LR +TA I+ L
Sbjct: 181 LQALKTTAAVERSVILIGPEGGFDDDERLALRGRPDCIPVNLGPRILRADTAAISAL 237
>gi|116620083|ref|YP_822239.1| 16S ribosomal RNA methyltransferase RsmE [Candidatus Solibacter
usitatus Ellin6076]
gi|116223245|gb|ABJ81954.1| protein of unknown function DUF558 [Candidatus Solibacter usitatus
Ellin6076]
Length = 237
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 103/228 (45%), Gaps = 13/228 (5%)
Query: 46 RFFS---QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVA 102
RFF + G + GDE H+T+VLR+ + R E+ + + + I + V
Sbjct: 5 RFFVDAIRNGAAELRGDEARHLTRVLRVESGQRFEISDNQHAYL----AEIAEAKGERVV 60
Query: 103 LEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDN 162
L+ + P + +K R +W++EK TELG + + P+ E R + +
Sbjct: 61 FRVLEAIAPVPMPVRITLCAAIVKFDRFEWMIEKATELGVERILPV--EATRTERGLFEA 118
Query: 163 GFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVT 222
+ S+ +R+ + P ++++ L ++ + F+ A PLV
Sbjct: 119 SRKRSERWTRIARESS--QQSRRVQIPEILPAVRLEECLKETAEHRY-FLDEGAAPPLVR 175
Query: 223 ALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
+ + R+++ L+I GPEG +TE E V AG V LGP LR ET
Sbjct: 176 EIPAERSDTVALLI-GPEGGWTEAERGLAVSAGWCPVSLGPLVLRAET 222
>gi|389783944|ref|ZP_10195179.1| 16S ribosomal RNA methyltransferase RsmE [Rhodanobacter
spathiphylli B39]
gi|388434148|gb|EIL91101.1| 16S ribosomal RNA methyltransferase RsmE [Rhodanobacter
spathiphylli B39]
Length = 244
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 100/211 (47%), Gaps = 12/211 (5%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
H+ +VLR++ D + +FNG G + I + + L V D KL++ + + A
Sbjct: 27 HVGRVLRMNAGDPLTVFNGDGNDYDATIVALGKRDLRVRI--DAKLLVRNESPLPLTLAQ 84
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNF-YYGFIANSAFVY 181
G +G + D +V+K TELGA + PLLTE +S D ++ +A SA
Sbjct: 85 GVARGEKMDLIVQKATELGAVRIVPLLTE---RSEVKLDPARAEKRLAHWRAVAASACEQ 141
Query: 182 GGQ-RLHEMVLNPPMKIDGLLP-LVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGP 239
G+ RL E + P + G L L L + E +A + GL+++GP
Sbjct: 142 CGRARLPE--ITPAQPLAGWLAGLADDGALRLALLPEGA--RSARELRFGTAGGLLVIGP 197
Query: 240 EGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
EG E++++ + AG + LGP LR ET
Sbjct: 198 EGGLGERDIDALSRAGFEGLRLGPRILRTET 228
>gi|352080256|ref|ZP_08951325.1| protein of unknown function DUF558 [Rhodanobacter sp. 2APBS1]
gi|351684965|gb|EHA68034.1| protein of unknown function DUF558 [Rhodanobacter sp. 2APBS1]
Length = 244
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 96/215 (44%), Gaps = 20/215 (9%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
H+ +VLR++ D + LFNG G I + + +V + K L + + A
Sbjct: 27 HVGRVLRMNPGDPLTLFNGDGHDYAAVILTVGKR--EVAVRVESKQALRNESPLPLTLAQ 84
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G + D +V+K TELG + PLLTE + R + +A++ G
Sbjct: 85 GVARGEKMDLIVQKATELGVARIVPLLTE-RSEVRLDAARAEKRLAHWRAVVASACEQSG 143
Query: 183 GQRLHEMVLNPPMKI-------DGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLI 235
RL E+ P+ DG L +LA + A+ +P + GL+
Sbjct: 144 RARLPEVTPALPLAAWLGSLADDGTL------RLALLPEADRSPRQLQFGPA----GGLL 193
Query: 236 IVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
+VGPEG E++V+ + AG + LGP LR ET
Sbjct: 194 VVGPEGGLGERDVDALSAAGFEGLRLGPRILRTET 228
>gi|389736138|ref|ZP_10189726.1| 16S ribosomal RNA methyltransferase RsmE [Rhodanobacter sp. 115]
gi|388439803|gb|EIL96270.1| 16S ribosomal RNA methyltransferase RsmE [Rhodanobacter sp. 115]
Length = 244
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 6/208 (2%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
H+ +VLR++ + +FNG G + I + + + + + ++ + + A
Sbjct: 27 HVARVLRMTAGAPLTVFNGDGHDYDAVILAVGKREVSLRVEQGRRI--DNESPLRLTLAQ 84
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G + D +V+K TELG + PLLTE + + + A++ G
Sbjct: 85 GVARGEKMDLIVQKATELGVSRIVPLLTE-RSEVKLDAARAEKRLTHWRAVAASACEQSG 143
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
RL E+ P++ L L L + E T AL ++ GL++VGPEG
Sbjct: 144 RARLPEITAATPLQA-WLDNLRGDEALRLALLPEGTQQARALDF--GDAGGLLVVGPEGG 200
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVET 270
+E++V +V+AG + LGP LR ET
Sbjct: 201 LSERDVAALVDAGFAGLRLGPRILRTET 228
>gi|402567635|ref|YP_006616980.1| hypothetical protein GEM_2888 [Burkholderia cepacia GG4]
gi|402248832|gb|AFQ49286.1| protein of unknown function DUF558 [Burkholderia cepacia GG4]
Length = 255
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 103/246 (41%), Gaps = 35/246 (14%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF + + + + D H +VLRL D + LF+G GG + ID+
Sbjct: 10 VPRFFVEAALRADATLALPADVARH-AQVLRLQPGDALALFDGSGGQYRARLVEIDKRS- 67
Query: 99 DVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
AL ++ P + + V A G G + DW++EK ELG +V PL T +
Sbjct: 68 ---ALAQIEAFDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGV-V 123
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLN----------PPMKIDGLLPLV-- 204
+ G+ + G + S G R+ ++ P DG L L+
Sbjct: 124 KLSGERADKRVAHWRGVVRASCEQCGRNRVPDVAAVRGFGAWLDTLPAAPADGELRLLLS 183
Query: 205 SQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPH 264
++ + F ++ +A P +++GPEG + E N G TA+ LGP
Sbjct: 184 PRASIPFASLPDAPPAAAVT----------LLIGPEGGLSPDEENAARACGFTALSLGPR 233
Query: 265 RLRVET 270
LR ET
Sbjct: 234 VLRTET 239
>gi|220936059|ref|YP_002514958.1| hypothetical protein Tgr7_2898 [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219997369|gb|ACL73971.1| protein of unknown function DUF558 [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 244
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 105/253 (41%), Gaps = 32/253 (12%)
Query: 36 YANQSRGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDR 95
Y NQS S G + ++ H+ +VLRL + LFNG+GG + +
Sbjct: 7 YLNQS-------LSVGDTIELDERAHRHVVQVLRLRPGAELVLFNGQGGEYRATLTEAQK 59
Query: 96 -------TGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPL 148
TG D D + LP V G KG R D+ ++K TELG + P+
Sbjct: 60 RHSSVSLTGFDP---RDTRPALP------VTLVQGISKGDRMDYSLQKATELGVSRIQPV 110
Query: 149 LTELHLQSRKIGDNGFLS--CNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQ 206
LT+ +S+ GD L + G + ++ G L E L + L
Sbjct: 111 LTQ---RSQAPGDPRRLDNRLEHWRGVVISACEQCGRNELPE--LGGVISFQAWLGSEPD 165
Query: 207 SKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRL 266
S L V A ++ L E S +++GPEG E E+ G T V LGP L
Sbjct: 166 SGLGLVLDPRAETGLSGLVPPEGEVS--LLIGPEGGLDEAEILAARHRGFTPVRLGPRIL 223
Query: 267 RVETATIALLATL 279
R ETA +A LA +
Sbjct: 224 RTETAGVAALAVI 236
>gi|386022666|ref|YP_005940691.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas stutzeri DSM
4166]
gi|327482639|gb|AEA85949.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas stutzeri DSM
4166]
Length = 238
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 100/216 (46%), Gaps = 11/216 (5%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +VLRLS V+LF+G G G + + + + V E L +P+ + +
Sbjct: 26 YIGRVLRLSAGSAVQLFDGSGAEYRGELLEVGKKSVSVELHERLA-GMPE-SPLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TPL++E ++ D ++ IA SA
Sbjct: 84 GLSRGERMDWAIQKATELGVSEITPLISE--RCEVRLNDERADKRLAHWRQIAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G+ + +++ P+ + L + + KL +AE L+S S ++GPEG
Sbjct: 142 GRSVLP-IIHAPVTLRDWLDVEADLKLVLHPVAE------PLASHAKPQSLAFLIGPEGG 194
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
++ EV G LGP LR ETA + L+
Sbjct: 195 LSDNEVELASGQGFLPARLGPRVLRTETAPVVALSV 230
>gi|254180624|ref|ZP_04887222.1| RNA methyltransferase, RsmE family [Burkholderia pseudomallei 1655]
gi|184211163|gb|EDU08206.1| RNA methyltransferase, RsmE family [Burkholderia pseudomallei 1655]
Length = 255
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 98/236 (41%), Gaps = 15/236 (6%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF + + + D H VLRL D + LF+G GG + ID+ G
Sbjct: 10 VPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKRG- 67
Query: 99 DVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
AL + P + + V A G G + DW++EK ELG +V PL T +
Sbjct: 68 ---ALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGV-V 123
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMK--IDGLLPLVSQSKLAFVAI 214
R G+ + + G + S G RL E+ L +D L + +L +
Sbjct: 124 RLSGERADKRVSHWRGVVRASCEQCGRNRLPEIALVRGFDAWLDALPATPADGELRLLLS 183
Query: 215 AEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
A+ +L ++ +++GPEG E G A+ LGP LR ET
Sbjct: 184 PRASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAALSLGPRVLRTET 239
>gi|254374666|ref|ZP_04990147.1| conserved hypothetical protein [Francisella novicida GA99-3548]
gi|151572385|gb|EDN38039.1| conserved hypothetical protein [Francisella novicida GA99-3548]
Length = 242
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 110/241 (45%), Gaps = 10/241 (4%)
Query: 41 RGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGL-IEGCIQRIDRTGLD 99
RG ++ I + G+ + + VLRL +D +ELFN L + I ID +
Sbjct: 5 RGFFSDISTKTTIFNISGEYYNYFKNVLRLKKSDLIELFNNTDSLQYKTKIIAIDNKNIT 64
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
+ ++ + + N++ A +K + +++K TELG ++ P++TE + K
Sbjct: 65 LEVIDKKHISNENNYITNLYQAI--IKSENFELVIQKATELGVNNIYPIITEF--TNHKF 120
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT- 218
NGF + IA + G R+ ++ P+ I+ L + L +A
Sbjct: 121 DKNGFDKKLERWHKIAIAGSEQCG-RVFIPKIHTPIDINDLQMPQNDLNLVLCPYTQAKQ 179
Query: 219 PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
V + SS N + I +GPEG F++KE++K + LG L+ ETA I +L+
Sbjct: 180 DFVQKVKSSTNFN---IFIGPEGGFSDKEMSKFHSNNFYTINLGKRILKAETAPINILSI 236
Query: 279 L 279
+
Sbjct: 237 I 237
>gi|410624661|ref|ZP_11335456.1| 16S rRNA (uracil1498-N3)-methyltransferase [Glaciecola pallidula
DSM 14239 = ACAM 615]
gi|410155742|dbj|GAC30830.1| 16S rRNA (uracil1498-N3)-methyltransferase [Glaciecola pallidula
DSM 14239 = ACAM 615]
Length = 242
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 107/219 (48%), Gaps = 12/219 (5%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ VLRL D + LFNG G + I++ V+A+ + +L + + ++ A
Sbjct: 27 YINNVLRLKQADPIVLFNGDGNEYSAEVLSINKK--QVLAIVNSQLSMRSESPLHIHLAQ 84
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G KG R D+ ++K ELG +TP++TE + K+ + + + + I SA
Sbjct: 85 GVSKGDRMDFALQKSVELGVTEITPVITERC--AVKLSADRWQKKHEQWQKIVISACEQS 142
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSS--RNESSGLIIVGPE 240
G+ + L+ P+ ++ L ++ + + TP + SS R +++GPE
Sbjct: 143 GRNVLP-TLHQPLSLNKWLGQSTEQQKVML-----TPGSSKYMSSLTRPVHGFRLLIGPE 196
Query: 241 GDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
G +E+EV + G +V LGP LR ETA +A ++ +
Sbjct: 197 GGLSEQEVYTCEQTGFDSVNLGPRILRTETAALASISIM 235
>gi|339495982|ref|YP_004716275.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas stutzeri ATCC
17588 = LMG 11199]
gi|338803354|gb|AEJ07186.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas stutzeri ATCC
17588 = LMG 11199]
Length = 238
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 100/216 (46%), Gaps = 11/216 (5%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +VLRLS V+LF+G G G + + + + V E L +P+ + +
Sbjct: 26 YIGRVLRLSAGSAVQLFDGSGAEYRGELLEVGKKSVSVELHERLT-GMPE-SPLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TPL++E ++ D ++ IA SA
Sbjct: 84 GLSRGERMDWAIQKATELGVSEITPLISE--RCEVRLNDERADKRLAHWRQIAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G+ + +++ P+ + L + + KL +AE L+S S ++GPEG
Sbjct: 142 GRSVLP-IIHAPVTLRDWLDVEADLKLVLHPVAE------PLASHAKPQSLAFLIGPEGG 194
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
++ EV G LGP LR ETA + L+
Sbjct: 195 LSDNEVELASGQGFLPARLGPRVLRTETAPVVALSV 230
>gi|421157430|ref|ZP_15616805.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
ATCC 25324]
gi|404550629|gb|EKA59360.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
ATCC 25324]
Length = 240
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 99/216 (45%), Gaps = 10/216 (4%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +VLR +T D V+LF+G G G + + + + V E + + +
Sbjct: 26 YIGRVLRHATGDAVQLFDGSGREYLGELVEVGKKNVRVELRE--QFAGQPDSPLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TP+++E ++ D ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVAEITPIVSER--CEVRLKDERADKRLQHWRQVAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G R +++PP+ ++ L L V A PL + SR +VGPEG
Sbjct: 142 G-RSSLPLIHPPLALEDWL-RGRDDDLRLVLHPVAAPLASHAPPSRLA----FLVGPEGG 195
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
++ EV + AG A LGP LR ETA + LA
Sbjct: 196 LSDAEVEQAKAAGFHAARLGPRVLRTETAPVVALAV 231
>gi|375104181|ref|ZP_09750442.1| RNA methyltransferase, RsmE family [Burkholderiales bacterium
JOSHI_001]
gi|374664912|gb|EHR69697.1| RNA methyltransferase, RsmE family [Burkholderiales bacterium
JOSHI_001]
Length = 242
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 96/219 (43%), Gaps = 9/219 (4%)
Query: 65 TKVLRLSTNDRVELFNGKGGLIEGCIQRIDRT--GLDVVALEDLKLVLPQHTQWNVFAAF 122
+VLRL + + LF+G+GG + R+ R+ + V+ E L LP W V A
Sbjct: 27 VQVLRLQPDAELRLFDGRGGQWRARVLRMGRSEVAVQVLVHEAQDLELP----WAVTLAI 82
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G R D LVEK TELG ++ PL+ E + R G+ + + G
Sbjct: 83 GMPANERMDALVEKATELGVAAIQPLVCERSVL-RLAGERAERRAQHWQAVAVAACEQCG 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
R+ + P+ + L S A ++ A + + + ++ GPEG
Sbjct: 142 RDRVPAVAA--PLPLSAWLRAGSGPAAAAWVLSLAPGSLRPAQRTVPADALTVLSGPEGG 199
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
+ E + + G VGLGP LR +TA +ALLA L L
Sbjct: 200 LSPAEEAQALAHGFLPVGLGPRVLRADTAPLALLAWLGL 238
>gi|374371963|ref|ZP_09629866.1| 16S ribosomal RNA methyltransferase RsmE [Cupriavidus basilensis
OR16]
gi|373096494|gb|EHP37712.1| 16S ribosomal RNA methyltransferase RsmE [Cupriavidus basilensis
OR16]
Length = 251
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 95/223 (42%), Gaps = 15/223 (6%)
Query: 66 KVLRLSTNDRVELFNGKGGLIEGCIQRI-DRTGLDVVALEDLKLVLPQHTQWNVFAAFGT 124
+VLRL+ D + LF+G+GG + I R + + D T V A G
Sbjct: 28 QVLRLNPGDDITLFDGRGGSHAATLVEIGKRNAMARIGGHD---PFEAETPLRVTLAQGL 84
Query: 125 LKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQ 184
G + DWL+EK ELG ++ PL + R + + + + G
Sbjct: 85 AGGDKMDWLIEKSVELGVAAIQPLQAARSV-VRLSAERAQKRQAHWQALVQAACEQCGRN 143
Query: 185 RLHEMVLNPPMKIDGLL-----PLVSQSKLAFVAIAEATPLVTALSSSRN---ESSGLII 236
RL E+ P ++ L P S+S V+ LV+ + RN + ++
Sbjct: 144 RLPEVA--PVANLESWLGQQASPATSRSARLLVSPRALQSLVSFATEQRNALLDCGVTLL 201
Query: 237 VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
+GPEG E + AG T V LGP LR ETA +A LATL
Sbjct: 202 IGPEGGLAPDEEAAALRAGFTGVSLGPRILRTETAGLACLATL 244
>gi|163788243|ref|ZP_02182689.1| hypothetical protein FBALC1_07678 [Flavobacteriales bacterium
ALC-1]
gi|159876563|gb|EDP70621.1| hypothetical protein FBALC1_07678 [Flavobacteriales bacterium
ALC-1]
Length = 234
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 95/220 (43%), Gaps = 18/220 (8%)
Query: 57 EGDEFWHMTKVLRLSTNDRVELFNGKGGLIEG--CIQRIDRTGLDVVALEDLKLVLPQHT 114
+ +E H+ KVLR D++ + NG G L E I I + + + L
Sbjct: 19 DKEESRHIVKVLRKKDGDKLHITNGNGWLFEAELSIADIKHCSVSINSK-----TLQGKR 73
Query: 115 QWNVFAAFGTLK-GGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGF 173
+N+ A K R +W +EK TE+G +++TP++ + H + + + F
Sbjct: 74 SYNLHLAVSPTKMNDRYEWFLEKATEIGIETITPIICD-HSERKVVKTERFEK------- 125
Query: 174 IANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSG 233
I SA Q + LN P+ + S F+A E T + S
Sbjct: 126 IIQSAMKQSLQ-CYLPKLNAPIAFKDFIN-EDFSGQKFIAHCEETDKKSLKSQISKNKDC 183
Query: 234 LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
I++GPEGDF+ KE+ ++ V LG RLR ETA I
Sbjct: 184 TILIGPEGDFSVKEIEMALQHNYIPVTLGETRLRTETAAI 223
>gi|167904305|ref|ZP_02491510.1| hypothetical protein BpseN_18786 [Burkholderia pseudomallei NCTC
13177]
Length = 262
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 100/239 (41%), Gaps = 21/239 (8%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF + + + D H VLRL D + LF+G GG + ID+ G
Sbjct: 19 VPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKRG- 76
Query: 99 DVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
AL + P + + V A G G + DW++EK ELG +V PL T +
Sbjct: 77 ---ALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGV-I 132
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMK-----IDGLLPLVSQSKLAF 211
R G+ + + G + S G RL E+ P++ +D L + +L
Sbjct: 133 RLSGERADKRVSHWRGVVRASCEQCGRNRLPEIA---PVRGFDAWLDALPATPADGELRL 189
Query: 212 VAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
+ A+ +L ++ +++GPEG E G A+ LGP LR ET
Sbjct: 190 LLSPRASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAALSLGPRVLRTET 248
>gi|420239657|ref|ZP_14743957.1| RNA methyltransferase, RsmE family [Rhizobium sp. CF080]
gi|398079307|gb|EJL70169.1| RNA methyltransferase, RsmE family [Rhizobium sp. CF080]
Length = 245
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 106/219 (48%), Gaps = 14/219 (6%)
Query: 51 GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVL 110
G V V ++F ++ VLR+ + LFNG+ G + + R + + A+E +
Sbjct: 19 GTRVEVSPEQFNYLANVLRMEEGAAILLFNGRDGEWKAHVTFPTRKKIVLEAVEQTR--- 75
Query: 111 PQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFY 170
PQ ++ F LK GR D+LV+K E+GA + P++T+ H+Q KI L N
Sbjct: 76 PQPPSSDLHYLFAPLKVGRLDYLVQKAVEMGAGFIQPVMTQ-HVQG-KITSMDRLQAN-- 131
Query: 171 YGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS-KLAFVAIAEATPLVTALSSSRN 229
+ +A G + E+ PP K+ LL + ++ F +A + S+
Sbjct: 132 ---VVEAAEQCGILSVPEVA--PPKKLGDLLDTWPEDRRIIFCDEGDAGQNPLPVLSAIK 186
Query: 230 ESSGLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLR 267
E+ ++VGPEG F+E+E ++ TA+ LGP LR
Sbjct: 187 ETKLALLVGPEGGFSEEERERLRALPFVTAIPLGPRILR 225
>gi|293607138|ref|ZP_06689480.1| 16S rRNA methyltransferase RsmE [Achromobacter piechaudii ATCC
43553]
gi|292814472|gb|EFF73611.1| 16S rRNA methyltransferase RsmE [Achromobacter piechaudii ATCC
43553]
Length = 243
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 104/243 (42%), Gaps = 17/243 (6%)
Query: 45 PRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PRFF S G + + H +VLRL + V LFNG+GG + + G
Sbjct: 4 PRFFCDIPLSAGARIALPDALAHHALRVLRLKAGESVVLFNGQGGEYPAVLDVDGKAG-- 61
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQS 156
L D + G G + DW+VEK ELGA V+P+ + L L
Sbjct: 62 YAQLGDFS-AREAELAGRITLVQGLPSGDKMDWVVEKAVELGASRVSPIAAQRSVLQLSG 120
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAE 216
++ ++ IA SA G R M ++ P + L ++
Sbjct: 121 PRLDKR-----VAHWQRIAQSAAEQCG-RNRLMAVDAPRSLADWLAEPAEGLRLLCHPEA 174
Query: 217 ATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALL 276
L L ++ ++ ++VGPEG +++KE+ +AG AV GP LR ETA +AL+
Sbjct: 175 GEDLAGKLRAAPGLTALTLLVGPEGGWSDKELELARQAGVQAVRFGPRVLRTETAGLALV 234
Query: 277 ATL 279
+ +
Sbjct: 235 SAV 237
>gi|398867792|ref|ZP_10623236.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM78]
gi|398235743|gb|EJN21552.1| RNA methyltransferase, RsmE family [Pseudomonas sp. GM78]
Length = 239
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 104/220 (47%), Gaps = 18/220 (8%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +VLR++ D ++LF+G G G + + + + V E + Q +
Sbjct: 26 YIGRVLRMAEGDALQLFDGSGHEFRGTLVEVGKKRVVVQINEQFAGQVESPLQ--IHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G +G R DW ++K TELG +TP+ +E + L+ + D L ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVTQITPIFSERCEVRLKDER-ADKRLL----HWRQVAISAC 138
Query: 180 VYGGQRLHEMVLNPPMKI-DGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVG 238
G R V++PP+ + D L ++ KL +AE PLV S + ++G
Sbjct: 139 EQCG-RSRVPVIHPPVLLADWLKQTEAELKLVLHPVAE--PLV----SHAKPGTLAFLIG 191
Query: 239 PEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
PEG ++ EV + G A LGP LR ETA + LA
Sbjct: 192 PEGGLSDAEVEQAKANGFHAARLGPRVLRTETAPVVALAV 231
>gi|187735952|ref|YP_001878064.1| hypothetical protein Amuc_1461 [Akkermansia muciniphila ATCC
BAA-835]
gi|187426004|gb|ACD05283.1| protein of unknown function DUF558 [Akkermansia muciniphila ATCC
BAA-835]
Length = 245
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 107/237 (45%), Gaps = 17/237 (7%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRT-GLDVVALEDLKLVLPQHT 114
+ GDE H KVLRL D +F+G G + R+ G+ +V E+ P
Sbjct: 18 LRGDEAHHAAKVLRLKQGDSCIVFDGCGRAAHAVVAEPPRSSGVLLVPGEECP---PSPP 74
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNFYY 171
++ KG D +++K ELG ++ PL+T+ + L +R+ +
Sbjct: 75 VAHLTLCQAVPKGANMDLIIQKSVELGVSAIVPLVTDRTIVRLNAREAEAK-----RQKW 129
Query: 172 GFIANSAFVYGGQR-LHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT-PLVTALSSSRN 229
IA A GQ L E+ L P + L + + ++A P+ L ++R+
Sbjct: 130 QRIALEACKQCGQNTLPEVALPVPFA-EWLRGGIPEGLNIIASLAPGVRPVREVLETARS 188
Query: 230 ES--SGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSD 284
S ++VGPEGDFT++E +EAG V LGP LRVETA LA + D
Sbjct: 189 RSVRHASLLVGPEGDFTDRETAMALEAGFVPVTLGPIVLRVETAAFFGLAAMRYALD 245
>gi|380694082|ref|ZP_09858941.1| 16S ribosomal RNA methyltransferase RsmE [Bacteroides faecis MAJ27]
Length = 232
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 98/242 (40%), Gaps = 49/242 (20%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQW-- 116
+E H T+VLRL D + L +GKG + I + L +K + Q W
Sbjct: 18 EEAQHCTRVLRLGIGDEITLTDGKGYFYQAEIT----VATNKRCLVAIKETIFQEPLWPC 73
Query: 117 NVFAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
++ A K R +W EK TE+G +T FL+C F
Sbjct: 74 HLHIAMAPTKNMDRNEWFAEKATEIGFDELT-----------------FLNCRF------ 110
Query: 176 NSAFVYGGQRLHEMV--------------LNPPMKIDGLL--PLVSQSKLAFVAIAEATP 219
+ V +R+ +++ LN D + Q +A E
Sbjct: 111 SERKVIKAERIEKILISAIKQSLKARLPKLNEMTDFDKFITQEFKGQKFIAHCYEGEKPL 170
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
L L + + L+++GPEGDF+E+EV K +E G T + LG RLR ETA + T+
Sbjct: 171 LKNILKAGED---ALVLIGPEGDFSEEEVKKAIECGFTPISLGKSRLRTETAALVACHTI 227
Query: 280 ML 281
L
Sbjct: 228 NL 229
>gi|237721383|ref|ZP_04551864.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|229449179|gb|EEO54970.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
Length = 232
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 99/242 (40%), Gaps = 49/242 (20%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQW-- 116
+E H +VLRLS D + L +GKG + I + ++K + Q W
Sbjct: 18 EEAQHCIRVLRLSIGDEITLTDGKGNFYKAEIT----VATNKRCFVNIKETIFQEPLWPC 73
Query: 117 NVFAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
++ A K R +W EK TE+G +T FL+C+F
Sbjct: 74 HLHIAMAPTKNMDRNEWFAEKATEIGFDELT-----------------FLNCHF------ 110
Query: 176 NSAFVYGGQRLHEMV--------------LNPPMKIDGLL--PLVSQSKLAFVAIAEATP 219
+ V +R+ +++ LN ++ D + Q +A E
Sbjct: 111 SERKVIKTERIEKILISAIKQSLKARLPKLNEMIEFDQFIRQEFKGQKFIAHCYEGEKPL 170
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
L L + L+++GPEGDF+E+EV K +E G + LG RLR ETA + TL
Sbjct: 171 LKNVLKPGED---ALVLIGPEGDFSEEEVKKAIERGFVPISLGKSRLRTETAALVACHTL 227
Query: 280 ML 281
L
Sbjct: 228 NL 229
>gi|254373211|ref|ZP_04988700.1| conserved hypothetical protein [Francisella tularensis subsp.
novicida GA99-3549]
gi|151570938|gb|EDN36592.1| conserved hypothetical protein [Francisella novicida GA99-3549]
Length = 242
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 110/241 (45%), Gaps = 10/241 (4%)
Query: 41 RGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGL-IEGCIQRIDRTGLD 99
RG ++ I + G+ + + VLRL +D +ELFN L + I ID +
Sbjct: 5 RGFFSDISTKTTIFNISGEYYNYFKNVLRLKKSDLIELFNNNDSLQYKTKIIAIDNKNIT 64
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
+ ++ + + N++ A +K + +++K TELG ++ P++TE + K
Sbjct: 65 LEVIDKKHISNENNYITNLYQAI--IKTENFELVIQKATELGVNNIYPIITEF--TNHKF 120
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT- 218
NGF + IA + G R+ ++ P+ I+ L + L +A
Sbjct: 121 DKNGFDKKLERWHKIAIAGSEQCG-RVFIPKIHTPIDINDLQMPQNDLNLVLCPYTQAKQ 179
Query: 219 PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
V + SS N + I +GPEG F++KE++K + LG L+ ETA I +L+
Sbjct: 180 DFVQKVKSSTNFN---IFIGPEGGFSDKEMSKFHSNNFYTINLGKRILKAETAPINILSI 236
Query: 279 L 279
+
Sbjct: 237 I 237
>gi|126439667|ref|YP_001060446.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia pseudomallei
668]
gi|237813838|ref|YP_002898289.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia pseudomallei
MSHR346]
gi|254199135|ref|ZP_04905550.1| RNA methyltransferase, RsmE family [Burkholderia pseudomallei S13]
gi|126219160|gb|ABN82666.1| 16S rRNA methyltransferase RsmE [Burkholderia pseudomallei 668]
gi|169656965|gb|EDS88362.1| RNA methyltransferase, RsmE family [Burkholderia pseudomallei S13]
gi|237506144|gb|ACQ98462.1| RNA methyltransferase, RsmE family [Burkholderia pseudomallei
MSHR346]
Length = 255
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 100/239 (41%), Gaps = 21/239 (8%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF + + + D H VLRL D + LF+G GG + ID+ G
Sbjct: 10 VPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKRG- 67
Query: 99 DVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
AL + P + + V A G G + DW++EK ELG +V PL T +
Sbjct: 68 ---ALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGV-V 123
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMK-----IDGLLPLVSQSKLAF 211
R G+ + + G + S G RL E+ P++ +D L + +L
Sbjct: 124 RLSGERADKRVSHWRGVVRASCEQCGRNRLPEIA---PVRGFDAWLDALPATPADGELRL 180
Query: 212 VAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
+ A+ +L ++ +++GPEG E G A+ LGP LR ET
Sbjct: 181 LLSPRASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAALSLGPRVLRTET 239
>gi|52081092|ref|YP_079883.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|319644950|ref|ZP_07999183.1| hypothetical protein HMPREF1012_00216 [Bacillus sp. BT1B_CT2]
gi|404489974|ref|YP_006714080.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|423683070|ref|ZP_17657909.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus licheniformis
WX-02]
gi|52004303|gb|AAU24245.1| Conserved hypothetical protein [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|52348973|gb|AAU41607.1| ribosomal RNA small subunit methyltransferase E [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|317392759|gb|EFV73553.1| hypothetical protein HMPREF1012_00216 [Bacillus sp. BT1B_CT2]
gi|383439844|gb|EID47619.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus licheniformis
WX-02]
Length = 255
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 103/234 (44%), Gaps = 19/234 (8%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLV-LPQHT 114
++G++ H+ V+R+S D V + K G C RI+ + V L ++ +
Sbjct: 21 IKGEDVHHIATVMRMSPGDEV-ICCAKDGHEAKC--RIESVTKEEVLLSVIEWTGETREL 77
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
+ A G KG + +W+++K TELGA S P + K+ + + I
Sbjct: 78 PVQIHIANGLPKGDKLEWIIQKGTELGASSFIPFQASRSVV--KLDEKKAKKKRERWAKI 135
Query: 175 ANSAFVYGGQRLHEMVL---NPPMKIDGLLPLVSQSKLAFVAIAEATP------LVTALS 225
A A ++ H + P LL + VA E++ + L
Sbjct: 136 AKEA----AEQSHRNAIPDVAPVHTFQRLLESLEDFDKCVVAYEESSKQGETSRFQSVLK 191
Query: 226 SSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
S SS L++ GPEG FTE+E+ + E GA A GLGP LR ETA + LA +
Sbjct: 192 SLSEGSSVLMVFGPEGGFTEEEIEALKEKGALACGLGPRILRAETAPLYALAAV 245
>gi|296386918|ref|ZP_06876417.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
PAb1]
gi|313111958|ref|ZP_07797747.1| hypothetical protein PA39016_004050033 [Pseudomonas aeruginosa
39016]
gi|386068671|ref|YP_005983975.1| hypothetical protein NCGM2_5779 [Pseudomonas aeruginosa NCGM2.S1]
gi|416882446|ref|ZP_11921910.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
152504]
gi|310884249|gb|EFQ42843.1| hypothetical protein PA39016_004050033 [Pseudomonas aeruginosa
39016]
gi|334835110|gb|EGM14010.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
152504]
gi|348037230|dbj|BAK92590.1| hypothetical protein NCGM2_5779 [Pseudomonas aeruginosa NCGM2.S1]
Length = 240
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 99/216 (45%), Gaps = 10/216 (4%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +VLR +T D V+LF+G G G + + + + V E + + +
Sbjct: 26 YIGRVLRHATGDAVQLFDGSGREYLGELVEVGKKNVRVELRE--QFAGQPDSPLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TP+++E ++ D ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVAEITPIVSER--CEVRLKDERADKRLQHWRQVAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G R +++PP+ ++ L L V A PL + SR +VGPEG
Sbjct: 142 G-RSSLPLIHPPLALEDWL-RGRDDDLRLVLHPVAAPLASHAPPSRLA----FLVGPEGG 195
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
++ EV + AG A LGP LR ETA + LA
Sbjct: 196 LSDAEVEQAQAAGFHAARLGPRVLRTETAPVVALAV 231
>gi|254369089|ref|ZP_04985101.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica FSC022]
gi|157122039|gb|EDO66179.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica FSC022]
Length = 242
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 110/241 (45%), Gaps = 10/241 (4%)
Query: 41 RGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGL-IEGCIQRIDRTGLD 99
RG ++ I + G+ + + VLRL +D +ELFN L + I ID +
Sbjct: 5 RGFFSDILTKTTIFNISGEYYNYFKNVLRLKKSDLIELFNNTDSLQYKTKIITIDNKNIT 64
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
+ ++ + + N++ A +K + +++K T+LG ++ P++TE + K
Sbjct: 65 LEVIDKKHISNENNYITNLYQAI--IKSENFELVIQKATKLGVNNIYPIITEF--TNHKF 120
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT- 218
NGF + IA + G R+ ++ P+ I+ L + L +A
Sbjct: 121 DKNGFDKKLERWHKIAIAGSEQCG-RVFIPKIHTPIDINDLQMPQNDLNLVLCPYTQAKQ 179
Query: 219 PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
V + SS N + I +GPEG F++KE++K + LG L+ ETA I +L+
Sbjct: 180 DFVQKVKSSTNFN---IFIGPEGGFSDKEMSKFHSNNFYTINLGKRILKAETAPINILSI 236
Query: 279 L 279
+
Sbjct: 237 I 237
>gi|217420819|ref|ZP_03452324.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei
576]
gi|217396231|gb|EEC36248.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei
576]
Length = 255
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 100/239 (41%), Gaps = 21/239 (8%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF + + + D H VLRL D + LF+G GG + ID+ G
Sbjct: 10 VPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKRG- 67
Query: 99 DVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
AL + P + + V A G G + DW++EK ELG +V PL T +
Sbjct: 68 ---ALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTTRGV-V 123
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMK-----IDGLLPLVSQSKLAF 211
R G+ + + G + S G RL E+ P++ +D L + +L
Sbjct: 124 RLSGERADKRVSHWRGVVRASCEQCGRNRLPEIA---PVRGFDAWLDALPATPADGELRL 180
Query: 212 VAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
+ A+ +L ++ +++GPEG E G A+ LGP LR ET
Sbjct: 181 LLSPRASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAALSLGPRVLRTET 239
>gi|427383693|ref|ZP_18880413.1| RsmE family RNA methyltransferase [Bacteroides oleiciplenus YIT
12058]
gi|425728398|gb|EKU91256.1| RsmE family RNA methyltransferase [Bacteroides oleiciplenus YIT
12058]
Length = 232
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 99/247 (40%), Gaps = 51/247 (20%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWN- 117
+E H +VLRL+ D++ L +GKG I V LE Q WN
Sbjct: 18 EEAQHCVRVLRLNIGDQITLTDGKGNFYRAEISVATNKRCMVNILE----TTYQEPLWNG 73
Query: 118 --VFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
A T R +W EK TE+G +T FL+C F
Sbjct: 74 HLHIAMAPTKNMDRTEWFAEKATEIGFDELT-----------------FLNCRF------ 110
Query: 176 NSAFVYGGQRLHEMV--------------LNPPMKIDGLL--PLVSQSKLAFVAIAEATP 219
+ V +R+ +++ LN + D + P Q +A E
Sbjct: 111 SERKVIKTERISKILVSAIKQSLKARLPQLNEMIDFDKFIVQPFEGQKFIAHCYEGEKPL 170
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
L L R L+++GPEGDF+E+EV K +E G + LG RLR ETA AL+A
Sbjct: 171 LKEVL---RKGEDALVLIGPEGDFSEEEVQKAIEYGFMPISLGRSRLRTETA--ALVACH 225
Query: 280 MLCSDSQ 286
+L +Q
Sbjct: 226 ILNLQNQ 232
>gi|424873868|ref|ZP_18297530.1| RNA methyltransferase, RsmE family [Rhizobium leguminosarum bv.
viciae WSM1455]
gi|393169569|gb|EJC69616.1| RNA methyltransferase, RsmE family [Rhizobium leguminosarum bv.
viciae WSM1455]
Length = 245
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 103/221 (46%), Gaps = 12/221 (5%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
S G +V D+F ++ VLR+ + LFNG+ G + + R + + E+ +
Sbjct: 16 LSSGAVVEANADQFNYLGNVLRMEDGAEILLFNGRDGEWKATLTFPTRKRILLTPTEETR 75
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
PQ ++ F LK GR D+LV+K E+GA + P++T+ H+Q KI + L
Sbjct: 76 ---PQPQPCDLHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQ-HVQG-KITNLDKLRA 130
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSS 227
N A + G + E P +D L S+ ++ + +A + S+
Sbjct: 131 NVVEA--AEQCGILGIPEVAE----PVRLLDLLDRWPSERRIIYCDEGDAGQNPLPVLSA 184
Query: 228 RNESSGLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLR 267
E ++VGPEG F+E+E ++ TA+ LGP LR
Sbjct: 185 IRERHLALLVGPEGGFSEEERARLRSLDFITAIPLGPRILR 225
>gi|443641180|ref|ZP_21125030.1| 16S ribosomal RNA methyltransferase E [Pseudomonas syringae pv.
syringae B64]
gi|443281197|gb|ELS40202.1| 16S ribosomal RNA methyltransferase E [Pseudomonas syringae pv.
syringae B64]
Length = 239
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 102/215 (47%), Gaps = 10/215 (4%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++++VLR++ D ++LF+G G G + + + + V E + + +
Sbjct: 26 YISRVLRMTEGDALQLFDGSGQEFLGTLLEVGKKRVHVQLTESFAGQV--ESGLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TP+++E ++ D ++ IA SA
Sbjct: 84 GLSRGERMDWAIQKATELGVSEITPIVSER--CEVRLKDERAEKRQAHWQQIAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G+ + V++ PM + + +++ L V P+ L+S S ++GPEG
Sbjct: 142 GRSV-VPVIHAPMPLAEWIKH-TEADLKLVL----HPVAEPLTSHDKPVSLAFLIGPEGG 195
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
+ EV + +AG A LGP LR ETA + L+
Sbjct: 196 LNDAEVAQAQDAGFHAARLGPRVLRTETAPVVALS 230
>gi|384099178|ref|ZP_10000278.1| 16S ribosomal RNA methyltransferase RsmE [Imtechella halotolerans
K1]
gi|383833602|gb|EID73053.1| 16S ribosomal RNA methyltransferase RsmE [Imtechella halotolerans
K1]
Length = 234
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 99/237 (41%), Gaps = 12/237 (5%)
Query: 45 PRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE 104
P ++ + +E H+ KVLR D + + NGKG E I+ + V +
Sbjct: 7 PDLTAEMTTFTFDKEESSHIVKVLRKKEGDLLHITNGKGECWEAEIELSSQKACVVTLTK 66
Query: 105 DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGF 164
K + A T R +W +EK TE+G +TP++ + H + + F
Sbjct: 67 HRKE--SGRNYYLHLAVAPTKMNDRYEWFLEKATEIGIDEITPIICD-HSERTIVKSERF 123
Query: 165 LSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTAL 224
I SA Q L+ LNP + + + +L F+A + +
Sbjct: 124 EK-------IIQSAMKQSLQ-LYLPKLNPAISFKDFIDIERNGQL-FIAHCDQGTRYSLK 174
Query: 225 SSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
+ + I++GPEGDF+E E+N + T V +G RLR ETA + T+ L
Sbjct: 175 RKALADHKVTILIGPEGDFSEAEINLALSKDYTPVSMGDTRLRTETAALVACHTVAL 231
>gi|336436660|ref|ZP_08616372.1| hypothetical protein HMPREF0988_01957 [Lachnospiraceae bacterium
1_4_56FAA]
gi|336007525|gb|EGN37550.1| hypothetical protein HMPREF0988_01957 [Lachnospiraceae bacterium
1_4_56FAA]
Length = 244
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 105/240 (43%), Gaps = 24/240 (10%)
Query: 52 GIVRVEGDEFWHMTKVLRLSTNDRVELF--NGKGGLIEGCIQRIDRTGLDVVALED--LK 107
G + +EG + HM VLR+ ++V++ NGK L E L+ E +
Sbjct: 14 GKIFIEGSDVNHMKNVLRMRVGEQVQISDQNGKNYLCE----------LETFEEEQACFR 63
Query: 108 LVLPQHTQ----WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNG 163
+V Q +Q ++ G K + + +V+K ELG V P+ T H K+ +
Sbjct: 64 IVETQRSQNELGSRLYLFQGLPKSDKMELIVQKAVELGVYEVIPVAT--HRAVVKLDEKK 121
Query: 164 FLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTA 223
+ IA A G+ + +V N M ++ L + L + +A +
Sbjct: 122 AAKKTARWNAIAEGAAKQSGRDVIPVVKNV-MTLEDALAYAADLDLILMPYEDAQGMAKT 180
Query: 224 ---LSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
+S R S I +GPEG F E EV K E GA + LG LR ETA IA+L+ LM
Sbjct: 181 RRVISEIRQGQSVGIFIGPEGGFEEAEVQKAQETGAVPITLGKRILRTETAGIAVLSILM 240
>gi|237747297|ref|ZP_04577777.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
gi|229378648|gb|EEO28739.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
Length = 243
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 103/216 (47%), Gaps = 12/216 (5%)
Query: 67 VLRLSTNDRVELFNGKGGLIEGCIQRI--DRTGLDVVALEDLKLVLPQHTQWNVFAAFGT 124
V+RLS + + LFNG+GG I +R ++V+ ++ LP + + G
Sbjct: 28 VVRLSRGEAITLFNGQGGEYRARILETGRNRVRAEIVSFSPHEVELP----YEISLVQGI 83
Query: 125 LKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQ 184
+ G+ DW++EK ELG + PL T+ + R D + + +++ G
Sbjct: 84 PEAGKMDWIIEKAAELGVHRIVPLATQRSV-VRVNADRIEKRLARWQSIVVSASEQCGRN 142
Query: 185 RLHEMVLNPPMKIDGLLPLVSQ-SKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDF 243
RL + + P+ D L + SK+ F A + + + ++ + + +++GPEG F
Sbjct: 143 RL--LAIGQPVNFDAYLQNSPEPSKIMFSPRASHS--LASWATGQKPHAISLLIGPEGGF 198
Query: 244 TEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
+ +E + G T + +GP LR ETA +A ++ +
Sbjct: 199 SAEEEELARQKGVTFLSMGPRILRTETAGLAAVSAI 234
>gi|208779920|ref|ZP_03247264.1| conserved hypothetical protein [Francisella novicida FTG]
gi|208744375|gb|EDZ90675.1| conserved hypothetical protein [Francisella novicida FTG]
Length = 242
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 110/241 (45%), Gaps = 10/241 (4%)
Query: 41 RGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGL-IEGCIQRIDRTGLD 99
RG ++ I + G+ + + VLRL +D +ELFN L + I ID +
Sbjct: 5 RGFFSDISTKTTIFNISGEYYNYFKNVLRLKKSDLIELFNNNDSLQYKTKIIAIDNKNIT 64
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
+ ++ + + N++ A +K + +++K TELG ++ P++TE + K
Sbjct: 65 LEVIDKKHISNENNYITNLYQAI--IKTENFELVIQKATELGVNNIYPIITEF--TNHKF 120
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT- 218
NGF + IA + G R+ ++ P+ I+ L + L +A
Sbjct: 121 DKNGFDKKLERWHKIAIAGSEQCG-RVFIPKIHTPIDINDLQMPQNDLNLVLCPYTQAKQ 179
Query: 219 PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
V + SS N + I +GPEG F++KE++K + LG L+ ETA I +L+
Sbjct: 180 DFVQKVKSSANFN---IFIGPEGGFSDKEMSKFHSNNFYTINLGKRILKAETAPINILSI 236
Query: 279 L 279
+
Sbjct: 237 I 237
>gi|404398908|ref|ZP_10990492.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas fuscovaginae
UPB0736]
Length = 239
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 104/218 (47%), Gaps = 14/218 (6%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDL--KLVLPQHTQWNVFA 120
++ +VLR++ D +++F+G G G + + + + V E + P H +
Sbjct: 26 YIGRVLRMAEGDALQVFDGSGNEFLGSLLEVGKKHVRVQLTETFAGQPDSPLH----LHL 81
Query: 121 AFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFV 180
G +G R DW ++K TELG +TP+++E ++ D ++ IA SA
Sbjct: 82 GQGLSRGERMDWAIQKATELGVSEITPIVSER--CEVRLKDERADKRLAHWRQIAISACE 139
Query: 181 YGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPE 240
G R V++PP+ ++ L ++++L V P+ L+S +S ++GPE
Sbjct: 140 QCG-RSTLPVIHPPLLLNEWLK-QTEAELKLVL----HPVAEPLTSHPKPASLAFLIGPE 193
Query: 241 GDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
G ++ EV + +G LGP LR ETA + LA
Sbjct: 194 GGLSDAEVEQAARSGYWPARLGPRVLRTETAPVVALAV 231
>gi|77965940|gb|ABB07320.1| 16S rRNA m(3)U-1498 methyltransferase [Burkholderia sp. 383]
Length = 262
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 103/246 (41%), Gaps = 35/246 (14%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF + + + D H +VLRL D + LF+G GG + ID+
Sbjct: 17 VPRFFVDAALRADATLALPADVARH-AQVLRLQPGDVLALFDGTGGQYRARLVEIDKRS- 74
Query: 99 DVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
AL + P + + V A G G + DW++EK ELG +V PL T +
Sbjct: 75 ---ALAQIDTFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGV-V 130
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMV----LN------PPMKIDGLLPLV-- 204
+ G+ + G + S G R+ ++ N P DG L L+
Sbjct: 131 KLSGERADKRVAHWRGVVRASCEQCGRNRVPDVAPVAGFNAWLDTLPAAPADGELRLLLS 190
Query: 205 SQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPH 264
++ + F ++ +A P T +++GPEG + E N G TA+ LGP
Sbjct: 191 PRASIPFTSLPDAPPAATVT----------LLIGPEGGLSPDEENAARARGFTALSLGPR 240
Query: 265 RLRVET 270
LR ET
Sbjct: 241 VLRTET 246
>gi|76812178|ref|YP_334841.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia pseudomallei
1710b]
gi|226196890|ref|ZP_03792469.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei
Pakistan 9]
gi|229269497|ref|YP_109550.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia pseudomallei
K96243]
gi|254190942|ref|ZP_04897448.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei
Pasteur 52237]
gi|254259381|ref|ZP_04950435.1| 16S rRNA methyltransferase RsmE [Burkholderia pseudomallei 1710a]
gi|386860467|ref|YP_006273416.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia pseudomallei
1026b]
gi|418377813|ref|ZP_12965845.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia pseudomallei
354a]
gi|418538930|ref|ZP_13104531.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia pseudomallei
1026a]
gi|418539701|ref|ZP_13105283.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia pseudomallei
1258a]
gi|418545952|ref|ZP_13111189.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia pseudomallei
1258b]
gi|418552404|ref|ZP_13117267.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia pseudomallei
354e]
gi|76581631|gb|ABA51106.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei
1710b]
gi|157938616|gb|EDO94286.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei
Pasteur 52237]
gi|225931150|gb|EEH27158.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei
Pakistan 9]
gi|254218070|gb|EET07454.1| 16S rRNA methyltransferase RsmE [Burkholderia pseudomallei 1710a]
gi|385346611|gb|EIF53286.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia pseudomallei
1026a]
gi|385364016|gb|EIF69763.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia pseudomallei
1258a]
gi|385365829|gb|EIF71486.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia pseudomallei
1258b]
gi|385373064|gb|EIF78135.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia pseudomallei
354e]
gi|385377951|gb|EIF82474.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia pseudomallei
354a]
gi|385657595|gb|AFI65018.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia pseudomallei
1026b]
Length = 255
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 100/239 (41%), Gaps = 21/239 (8%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF + + + D H VLRL D + LF+G GG + ID+ G
Sbjct: 10 VPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKRG- 67
Query: 99 DVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
AL + P + + V A G G + DW++EK ELG +V PL T +
Sbjct: 68 ---ALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGV-V 123
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMK-----IDGLLPLVSQSKLAF 211
R G+ + + G + S G RL E+ P++ +D L + +L
Sbjct: 124 RLSGERADKRVSHWRGVVRASCEQCGRNRLPEIA---PVRGFDAWLDALPATPADGELRL 180
Query: 212 VAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
+ A+ +L ++ +++GPEG E G A+ LGP LR ET
Sbjct: 181 LLSPRASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAALSLGPRVLRTET 239
>gi|10945822|gb|AAG24651.1| unknown [Alcanivorax borkumensis]
Length = 240
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 108/243 (44%), Gaps = 30/243 (12%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
F G +V + H+ KVLR++ D + +FNG+GG + RI V +E L
Sbjct: 11 FHVGQLVELGASASHHIGKVLRMAVADELVVFNGRGG---EWLARISAISKKAVCIEPLT 67
Query: 108 LVLPQHTQ-WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTEL-------HLQSRKI 159
V A +KG R D+ ++K TELGA ++ L TE Q +K+
Sbjct: 68 FTDEDRCAPLAVTVALPMIKGERMDYAIQKATELGATALVILDTERCEVRLKGERQEKKL 127
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPL---VSQSKLAFVAIAE 216
G ++ +A SA G LN + G+L L ++ A IA
Sbjct: 128 G---------HWQQVAISACEQCG-------LNRVPVVHGVLSLRDWLTSDLPALKLIAH 171
Query: 217 ATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALL 276
+ ++ + ++ ++ GPEG F+ E+ + +AG + LG LR ETA +ALL
Sbjct: 172 PGEKSFSAAALQGQTELALLTGPEGGFSNDELQQAADAGFSPFALGNRVLRAETAPVALL 231
Query: 277 ATL 279
A L
Sbjct: 232 AAL 234
>gi|171992137|gb|ACB63056.1| protein of unknown function DUF558 [Burkholderia ambifaria MC40-6]
Length = 262
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 103/239 (43%), Gaps = 21/239 (8%)
Query: 44 IPRFFSQGGIVRVEGD-----EFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF + + R + E +VLRL D + LF+G GG + ID+
Sbjct: 17 VPRFFVEAAL-RADATLTLPAEVARHAQVLRLQPGDTLALFDGSGGQYRARLVEIDKRN- 74
Query: 99 DVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
AL ++ P + + V A G G + DW++EK ELG +V PL T +
Sbjct: 75 ---ALAQIEAFDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGV-V 130
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMK-----IDGLLPLVSQSKLAF 211
+ G+ + G + S G R+ ++ P++ +D L + +L
Sbjct: 131 KLSGERADKRVAHWRGVVRASCEQCGRNRVPDVA---PVRGFGAWLDTLPAAPADGELRL 187
Query: 212 VAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
+ A+ +L + + +++GPEG + E N G TA+ LGP LR ET
Sbjct: 188 LLSPRASVPFASLPDAPPAAEVTLLIGPEGGLSPDEENAARAHGFTALSLGPRVLRTET 246
>gi|406946596|gb|EKD77748.1| hypothetical protein ACD_42C00198G0002 [uncultured bacterium]
Length = 240
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 105/246 (42%), Gaps = 21/246 (8%)
Query: 45 PRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDR--TGLDVVA 102
P + G V +E + H+ +VLR T D + +FN K G + IQ + +++
Sbjct: 9 PHHLTTGLTVMLEKNASHHLLQVLRKKTGDTLFVFNEKDGEYDATIQSEQKKIACIEIGK 68
Query: 103 LEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKI 159
+ K P + G + R D+ ++K TELG +TPL +E + L + ++
Sbjct: 69 YHERKTESP----LRIHLGQGISRSDRMDYAIQKATELGVAEITPLFSEFCQVQLSAERM 124
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
++ I SA G R V++P M + K+ F+ T
Sbjct: 125 EKR-----IAHWQAITVSAAEQSG-RCAVPVVHPVMPFSEWI--TQNEKIKFICCPRPTE 176
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
+N L+ +GPEG F++ E+ ++ + + LGP LR ETAT+ + L
Sbjct: 177 QNMLSEKIKN---CLLTIGPEGGFSQAEIENALQQNFSILSLGPRILRTETATVVAMTVL 233
Query: 280 M-LCSD 284
C D
Sbjct: 234 QSWCGD 239
>gi|325287492|ref|YP_004263282.1| Ribosomal RNA small subunit methyltransferase E [Cellulophaga
lytica DSM 7489]
gi|324322946|gb|ADY30411.1| Ribosomal RNA small subunit methyltransferase E [Cellulophaga
lytica DSM 7489]
Length = 235
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 94/240 (39%), Gaps = 40/240 (16%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
+E H+ KVLR D + + NG G L I D K P H W
Sbjct: 21 EESKHIVKVLRKVEGDELYITNGNGYLFTAKIMVADVKKCKAQITSKEKKHRPMH--WLH 78
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSA 178
A T R +W +EK TE+G +TP++ + H + +
Sbjct: 79 IAVAPTKMNDRFEWFLEKATEIGVDEITPIICD-HSERK--------------------- 116
Query: 179 FVYGGQRLHEMVLNPPMK--IDGLLPLVS------------QSKLAFVAIAEATPLVTAL 224
V +R+ E VL MK + LP ++ L F+A E V
Sbjct: 117 -VLKLERM-EKVLQSAMKQSLQTYLPKLNAPIPYAEFVQKEHKDLLFIAHCEEEEKVELK 174
Query: 225 SSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSD 284
+ I++GPEGDF+ E+ + G V LG +RLR ETA I AT+ + ++
Sbjct: 175 RRVAADKDVTILIGPEGDFSSAEIKQAYVNGFIPVSLGKNRLRTETAAIVACATVAMINN 234
>gi|110832950|ref|YP_691810.1| hypothetical protein ABO_0090 [Alcanivorax borkumensis SK2]
gi|110646061|emb|CAL15537.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
Length = 240
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 108/243 (44%), Gaps = 30/243 (12%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
F G +V + H+ KVLR++ D + +FNG+GG + RI V +E L
Sbjct: 11 FHVGQLVELGASASHHIGKVLRMAVADELVVFNGRGG---EWLARISAINKKAVCIEPLT 67
Query: 108 LVLPQHTQ-WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTEL-------HLQSRKI 159
V A +KG R D+ ++K TELGA ++ L TE Q +K+
Sbjct: 68 FTDEDRCAPLAVTVALPMIKGERMDYAIQKATELGATALVILDTERCEVRLKGERQEKKL 127
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPL---VSQSKLAFVAIAE 216
G ++ +A SA G LN + G+L L ++ A IA
Sbjct: 128 G---------HWQQVAISACEQCG-------LNRVPVVHGVLSLRDWLTSDLPALKLIAH 171
Query: 217 ATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALL 276
+ ++ + ++ ++ GPEG F+ E+ + +AG + LG LR ETA +ALL
Sbjct: 172 PGEKSFSAAALQGQTELALLTGPEGGFSNDELQQAADAGFSPFALGNRVLRAETAPVALL 231
Query: 277 ATL 279
A L
Sbjct: 232 AAL 234
>gi|348026699|ref|YP_004766504.1| RNA methyltransferase [Megasphaera elsdenii DSM 20460]
gi|341822753|emb|CCC73677.1| RNA methyltransferase [Megasphaera elsdenii DSM 20460]
Length = 242
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 96/235 (40%), Gaps = 8/235 (3%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
F G + D+ H+ VLR + D + + + G E I R++ G K
Sbjct: 8 FPICGTFELSADDAHHVVVVLRHTVGDTLNVTDCTGATYECFITRME--GHSAYLTPARK 65
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
L V A G LKG + DW+V+K TELG + P+ E H +
Sbjct: 66 LSDGPSANGKVILAAGLLKGDKFDWVVQKATELGVGRIVPVQME-HCVVKLDDKRRQARL 124
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSS 227
+ +A G + E+ P M L+ + ++ E PL A
Sbjct: 125 GRWQRLALEAAKQCGRDDVPEVA--PVMSFTELVDAYADTRFIIPYEQETAPLSEACHDV 182
Query: 228 RNESSGLIIVGPEGDFTEKEVNKIVE--AGATAVGLGPHRLRVETATIALLATLM 280
R +I +GPEG + EKE+ + A V LGP LR ETA++A L+ +M
Sbjct: 183 RT-GDAVIAIGPEGGYAEKEIAYATQHLAWCRTVSLGPRILRAETASLAALSIIM 236
>gi|332878544|ref|ZP_08446264.1| RNA methyltransferase, RsmE family [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332683445|gb|EGJ56322.1| RNA methyltransferase, RsmE family [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 242
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 101/229 (44%), Gaps = 19/229 (8%)
Query: 57 EGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQW 116
+ +E H+ KVLR D + + NGKG L EG + +V L+ + + H +
Sbjct: 19 DKEESQHIAKVLRKKQGDTLHITNGKGFLFEGQLSFASPKQCEVSILKCQEQI---HRPY 75
Query: 117 NVFAAFGTLK-GGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
++ K R +W +EK TE+G +TP++ + H + + F I
Sbjct: 76 HLHLVVAPTKMNERYEWFLEKATEIGIDEITPIICQ-HSERTSLKLERFEK-------II 127
Query: 176 NSAFVYGGQRLHEMVLNPPMK----IDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNES 231
SA Q + LN P+ ++ S +A E L AL+
Sbjct: 128 LSAMKQSLQ-CYLPTLNSPITSAAFFKQMMTDTSDKYIAHCQENEKILLSNALTPLSERI 186
Query: 232 SGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
+ I++GPEGDF+E+E++ + G + LG RLR ETA I T++
Sbjct: 187 T--ILIGPEGDFSEEEISTAIAQGFRPISLGDTRLRTETAAIVACHTVL 233
>gi|116054150|ref|YP_788593.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
UCBPP-PA14]
gi|115589371|gb|ABJ15386.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
Length = 240
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 101/216 (46%), Gaps = 10/216 (4%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +VLR +T D V+LF+G G G + + + + V E + + +
Sbjct: 26 YIGRVLRHATGDAVQLFDGSGREYLGELVEVGKKNVRVELRE--QFAGQPDSPLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TP+++E ++ D ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVAEITPIVSER--CEVRLKDERADKRLQHWRQVAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G R +++PP+ ++ L +L V A PL + + SR +VGP+G
Sbjct: 142 G-RSSLPLIHPPLALEDWL-RGRDDELRLVLHPVAAPLASHVPPSRLA----FLVGPKGG 195
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
++ EV + AG A LGP LR ETA + LA
Sbjct: 196 LSDAEVEQAKAAGFHAARLGPRVLRTETAPVVALAV 231
>gi|356960532|ref|ZP_09063514.1| hypothetical protein gproSA_02411 [gamma proteobacterium SCGC
AAA001-B15]
Length = 238
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 108/241 (44%), Gaps = 25/241 (10%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRT-GLDVVALE-- 104
F G +E + H+ KVLR + + LFNG G + + +T ++VV+ +
Sbjct: 12 FKVGDKANLEKNNEHHLIKVLRFPVGNTITLFNGDGFDYQAIVISTKKTYKVEVVSQQKN 71
Query: 105 ----DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIG 160
+L L L Q G KG + D+L++K ELG + P+ TE H R
Sbjct: 72 ESESNLDLTLAQ----------GIAKGEKMDFLIQKAVELGVSRIIPIQTE-HCVVRLKA 120
Query: 161 DNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPL 220
D N ++ IAN A G+ + + ++ P + LL + + FV AT
Sbjct: 121 DKVVKRIN-HWQKIANHACGQSGRSV-IVDISLPQTLTELLNKSNHN--GFVLHHRATE- 175
Query: 221 VTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
L + S I++GPEG ++ E+ + AG + LG LR ETA++ +A +
Sbjct: 176 --NLQTVEKPSKATILIGPEGGLSDVEIKQATNAGFQPLLLGKRILRTETASLVAIANMQ 233
Query: 281 L 281
L
Sbjct: 234 L 234
>gi|339327205|ref|YP_004686898.1| ribosomal RNA small subunit methyltransferase E [Cupriavidus
necator N-1]
gi|338167362|gb|AEI78417.1| ribosomal RNA small subunit methyltransferase E [Cupriavidus
necator N-1]
Length = 250
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 104/247 (42%), Gaps = 18/247 (7%)
Query: 45 PRFFSQGG--IVRVEGD-----EFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRI-DRT 96
PRFF G ++ E D +VLRL D + LF+G+GG + + R
Sbjct: 3 PRFFVGGTDTVLAAESDFPLPEPVVRHAQVLRLVPGDAMTLFDGRGGSHAATLVELGKRH 62
Query: 97 GLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
L + D P + V A G G + DWL+EK ELG ++ PL +
Sbjct: 63 ALARIGAHDAAEAEPP---FRVTLAQGLAGGDKMDWLIEKAVELGVTAIQPLQASRSV-V 118
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAE 216
R G+ + + + G RL E+ P + L + +
Sbjct: 119 RLSGERAHKRHAHWQALVQAACEQCGRNRLPEVA--PVANFETWLAQSAAGGARLLVSPR 176
Query: 217 ATPLVTALSSSRNES---SGL-IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
AT + A + + E+ G+ +++GPEG +E +AG T V LGP LR ETA
Sbjct: 177 ATYSLPAFIAEQREALLAGGVTLLIGPEGGLAPEEEQAARQAGFTGVSLGPRILRTETAG 236
Query: 273 IALLATL 279
+A LATL
Sbjct: 237 LACLATL 243
>gi|229260091|ref|YP_367964.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia sp. 383]
Length = 255
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 103/246 (41%), Gaps = 35/246 (14%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF + + + D H +VLRL D + LF+G GG + ID+
Sbjct: 10 VPRFFVDAALRADATLALPADVARH-AQVLRLQPGDVLALFDGTGGQYRARLVEIDKRS- 67
Query: 99 DVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
AL + P + + V A G G + DW++EK ELG +V PL T +
Sbjct: 68 ---ALAQIDTFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGV-V 123
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMV----LN------PPMKIDGLLPLV-- 204
+ G+ + G + S G R+ ++ N P DG L L+
Sbjct: 124 KLSGERADKRVAHWRGVVRASCEQCGRNRVPDVAPVAGFNAWLDTLPAAPADGELRLLLS 183
Query: 205 SQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPH 264
++ + F ++ +A P T +++GPEG + E N G TA+ LGP
Sbjct: 184 PRASIPFTSLPDAPPAATVT----------LLIGPEGGLSPDEENAARARGFTALSLGPR 233
Query: 265 RLRVET 270
LR ET
Sbjct: 234 VLRTET 239
>gi|381395532|ref|ZP_09921229.1| 16S rRNA (uracil1498-N3)-methyltransferase [Glaciecola punicea DSM
14233 = ACAM 611]
gi|379328761|dbj|GAB56362.1| 16S rRNA (uracil1498-N3)-methyltransferase [Glaciecola punicea DSM
14233 = ACAM 611]
Length = 252
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 105/253 (41%), Gaps = 37/253 (14%)
Query: 44 IPRFFSQGGIV-----RVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
IPRFF + ++ + +M VLRL + LFNG G I I +
Sbjct: 13 IPRFFIEDPLIIDSTINAPTELAHYMHNVLRLRIGTPIVLFNGNGSDFPSEIVDIQKRSA 72
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
++ + L L + ++ G KG R D+ ++K ELG +TP++TE
Sbjct: 73 SILINAQISLSL--ESPLHLHLGQGVSKGERMDFALQKSVELGVTEITPIITE------- 123
Query: 159 IGDNGFLSCN-------FYYGFIANSAFVYGG----QRLHEMVLNPPMKIDGLLPLVSQS 207
+CN + A + G QR +L+ P+ + L S
Sbjct: 124 -------NCNVKLDQERWDKKLAAWQKLIIGACEQSQRNILPILHQPVTMHQWLG--QSS 174
Query: 208 KLAFVAIAEATPLVTALSSSRNESSGL-IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRL 266
L + +A T LS + G +++GPEG +EKE+ E G T V +G L
Sbjct: 175 DLTKIILAPGAK--TYLSGLQQPQKGFRVVIGPEGGLSEKEIYTATETGYTPVNIGSRIL 232
Query: 267 RVETATIALLATL 279
R ETA IA LA L
Sbjct: 233 RTETAAIACLAIL 245
>gi|189467796|ref|ZP_03016581.1| hypothetical protein BACINT_04188 [Bacteroides intestinalis DSM
17393]
gi|189436060|gb|EDV05045.1| RNA methyltransferase, RsmE family [Bacteroides intestinalis DSM
17393]
Length = 232
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 100/247 (40%), Gaps = 51/247 (20%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWN- 117
+E H +VLRL+ D++ L +GKG I V LE + Q WN
Sbjct: 18 EEAQHCIRVLRLNIGDQITLTDGKGYFYRAEISAATNKRCMVNILE----TIYQEPLWNG 73
Query: 118 --VFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
A T R +W EK TE+G +T FL+C F
Sbjct: 74 HLHIAMAPTKNMDRTEWFAEKATEIGFDELT-----------------FLNCRF------ 110
Query: 176 NSAFVYGGQRLHEMV--------------LNPPMKIDGLL--PLVSQSKLAFVAIAEATP 219
+ V +R+ +++ LN + + P Q +A E
Sbjct: 111 SERKVIKIERISKILVSAIKQSLKARLPQLNEMTDFNKFIAQPFKGQKFIAHCYEGEKPL 170
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
L L R L+++GPEGDF+E+EV K +E G T + LG RLR ETA AL+A
Sbjct: 171 LKDVL---RKGEDALVLIGPEGDFSEEEVQKAIENGFTPISLGKSRLRTETA--ALVACH 225
Query: 280 MLCSDSQ 286
+L +Q
Sbjct: 226 ILNLQNQ 232
>gi|326333962|ref|ZP_08200192.1| RNA methyltransferase, RsmE family [Nocardioidaceae bacterium
Broad-1]
gi|325948241|gb|EGD40351.1| RNA methyltransferase, RsmE family [Nocardioidaceae bacterium
Broad-1]
Length = 247
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 99/230 (43%), Gaps = 6/230 (2%)
Query: 51 GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVL 110
G V V GDE H V RL + V L +G G + G I + + + V E +
Sbjct: 17 GDAVEVSGDEGHHAVVVRRLRVGEEVVLTDGAGEGVTGTITQTTKKSMTVRVDEIIIGDA 76
Query: 111 PQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFY 170
P V A KG R + VE TE+GA + P + K G+ S +
Sbjct: 77 PPEPSLTVVQALP--KGDRGELAVEMVTEIGAARIVPWAAARSVAVWK-GERAVKSLARW 133
Query: 171 YGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNE 230
+A +RL + P D ++ ++ + +A V E T + A+ +E
Sbjct: 134 RATAREAA--KQSRRLWHPEVEPLATTDAVVAMIEAADVAVVLHEEGTLPLGAVPVI-DE 190
Query: 231 SSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
S L++VGPEG T E+ +AGAT + LG LR TA +A A L+
Sbjct: 191 GSILVVVGPEGGLTVDEIALFEKAGATTIRLGGEVLRTSTAGVAACAALL 240
>gi|344340367|ref|ZP_08771292.1| Ribosomal RNA small subunit methyltransferase E [Thiocapsa marina
5811]
gi|343799537|gb|EGV17486.1| Ribosomal RNA small subunit methyltransferase E [Thiocapsa marina
5811]
Length = 243
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 104/250 (41%), Gaps = 32/250 (12%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
IPR + G + + + H+T+VLRL T + LFNG G + R++R+G
Sbjct: 3 IPRVYVDLPLEPGTALELPSAQARHLTQVLRLPTETPLVLFNGDGYDYPAHLIRVERSG- 61
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQ 155
AL + N+ A G KG R D+ ++K ELG VTPL TE +HL
Sbjct: 62 -TAALIGTPGAPERVPPLNIHLALGVSKGERMDYALQKSVELGVGRVTPLFTERSQVHLS 120
Query: 156 SRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPM------KIDGLLPLVSQSKL 209
++ + G + + G +RL + DG L L ++
Sbjct: 121 GPRLERR----LEHWRGVLIGACEQSGRRRLPYLAAAATYSDWLSKHADGGLLLDPEADR 176
Query: 210 AFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVE 269
A++ +T +++GPEG + +E G V LGP LR E
Sbjct: 177 PLTALSAPVATIT------------LLIGPEGGLSPRERTGARTRGFEGVRLGPRILRTE 224
Query: 270 TATIALLATL 279
TA +A +A +
Sbjct: 225 TAPLAAIAVI 234
>gi|160887114|ref|ZP_02068117.1| hypothetical protein BACOVA_05130 [Bacteroides ovatus ATCC 8483]
gi|423288790|ref|ZP_17267641.1| RsmE family RNA methyltransferase [Bacteroides ovatus CL02T12C04]
gi|156107525|gb|EDO09270.1| RNA methyltransferase, RsmE family [Bacteroides ovatus ATCC 8483]
gi|392669988|gb|EIY63474.1| RsmE family RNA methyltransferase [Bacteroides ovatus CL02T12C04]
Length = 232
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 98/242 (40%), Gaps = 49/242 (20%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQW-- 116
+E H +VLRLS D + L +GKG + I + ++K + Q W
Sbjct: 18 EEAQHCIRVLRLSIGDEITLTDGKGNFYKAEIT----VATNKRCFVNIKETIFQEPLWPC 73
Query: 117 NVFAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
++ A K R +W EK TE+G +T FL+C F
Sbjct: 74 HLHIAMAPTKNMDRNEWFAEKATEIGFNELT-----------------FLNCRF------ 110
Query: 176 NSAFVYGGQRLHEMV--------------LNPPMKIDGLL--PLVSQSKLAFVAIAEATP 219
+ V +R+ +++ LN ++ D + Q +A E
Sbjct: 111 SERKVIKTERIEKILVSAIKQSLKARLPKLNEMIEFDQFIRQEFKGQKFIAHCYEGEKPL 170
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
L L + L+++GPEGDF+E+EV K +E G + LG RLR ETA + TL
Sbjct: 171 LKNVLKPGED---ALVLIGPEGDFSEEEVKKAIERGFVPISLGKSRLRTETAALVACHTL 227
Query: 280 ML 281
L
Sbjct: 228 NL 229
>gi|126663640|ref|ZP_01734636.1| hypothetical protein FBBAL38_11239 [Flavobacteria bacterium BAL38]
gi|126624223|gb|EAZ94915.1| hypothetical protein FBBAL38_11239 [Flavobacteria bacterium BAL38]
Length = 234
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 99/230 (43%), Gaps = 22/230 (9%)
Query: 57 EGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV-VALEDLKLVLPQHTQ 115
+ +E H+ KVLR D + + NG G L E I +V +A E + + +T
Sbjct: 19 DKEESKHIVKVLRKKEGDTIFITNGLGFLFESEIILASEKKCEVKIAKETFQEPVAFYTH 78
Query: 116 WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
A T R +W +EK TE+G +TP++ + RK+ Y
Sbjct: 79 ---IAVAPTKMNDRLEWFLEKATEIGIDEITPIICDH--SERKV-----------YKIDR 122
Query: 176 NSAFVYGG--QRLHEMV--LNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNES 231
+ Q LH + +N P + + L + + F+A E T + + ++
Sbjct: 123 AEKIIQAAMKQSLHYYLPKINEPTSLSQFVKLNFEGQ-KFIAHCEETDKKSFKNEIKHNE 181
Query: 232 SGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
I++GPEGDF+ KE+N + V LG RLR ETA + T+ L
Sbjct: 182 KITILIGPEGDFSTKEINLAIANQFIPVTLGNTRLRTETAALVACHTIAL 231
>gi|424943164|ref|ZP_18358927.1| conserved hypothetical protein [Pseudomonas aeruginosa NCMG1179]
gi|346059610|dbj|GAA19493.1| conserved hypothetical protein [Pseudomonas aeruginosa NCMG1179]
Length = 240
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 100/216 (46%), Gaps = 10/216 (4%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +VLR +T D V+LF+G G G + + + + V E + + +
Sbjct: 26 YIGRVLRHATGDAVQLFDGSGREYLGELVEVGKKNVRVELRE--QFAGQPDSPLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TP+++E ++ D ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVAEITPIVSER--CEVRLKDERADKRLQHWRQVAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G R +++PP+ ++ L +L V A PL + SR +VGPEG
Sbjct: 142 G-RSSLPLIHPPLALEDWL-RGRDDELRLVLHPVAAPLASHAPPSRLA----FLVGPEGG 195
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
++ EV + AG + LGP LR ETA + LA
Sbjct: 196 LSDAEVEQAQAAGFHSARLGPRVLRTETAPVVALAV 231
>gi|293370883|ref|ZP_06617428.1| RNA methyltransferase, RsmE family [Bacteroides ovatus SD CMC 3f]
gi|383114528|ref|ZP_09935290.1| RsmE family RNA methyltransferase [Bacteroides sp. D2]
gi|423295047|ref|ZP_17273174.1| RsmE family RNA methyltransferase [Bacteroides ovatus CL03T12C18]
gi|292634099|gb|EFF52643.1| RNA methyltransferase, RsmE family [Bacteroides ovatus SD CMC 3f]
gi|313693766|gb|EFS30601.1| RsmE family RNA methyltransferase [Bacteroides sp. D2]
gi|392674070|gb|EIY67520.1| RsmE family RNA methyltransferase [Bacteroides ovatus CL03T12C18]
Length = 232
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 98/242 (40%), Gaps = 49/242 (20%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQW-- 116
+E H +VLRLS D + L +GKG + I + ++K + Q W
Sbjct: 18 EEAQHCIRVLRLSIGDEITLTDGKGNFYKAEIT----VATNKRCFVNIKETIFQEPLWPC 73
Query: 117 NVFAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
++ A K R +W EK TE+G +T FL+C F
Sbjct: 74 HLHIAMAPTKNMDRNEWFAEKATEIGFDELT-----------------FLNCRF------ 110
Query: 176 NSAFVYGGQRLHEMV--------------LNPPMKIDGLL--PLVSQSKLAFVAIAEATP 219
+ V +R+ +++ LN ++ D + Q +A E
Sbjct: 111 SERKVIKTERIEKILVSAIKQSLKARLPKLNEMIEFDQFIRQEFKGQKFIAHCYEGEKPL 170
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
L L + L+++GPEGDF+E+EV K +E G + LG RLR ETA + TL
Sbjct: 171 LKNVLKPGED---ALVLIGPEGDFSEEEVKKAIERGFVPISLGKSRLRTETAALVACHTL 227
Query: 280 ML 281
L
Sbjct: 228 NL 229
>gi|342210501|ref|ZP_08703265.1| 16S ribosomal RNA methyltransferase RsmE [Mycoplasma anatis 1340]
gi|341579435|gb|EGS29455.1| 16S ribosomal RNA methyltransferase RsmE [Mycoplasma anatis 1340]
Length = 226
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 104/230 (45%), Gaps = 39/230 (16%)
Query: 66 KVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAFGT- 124
KVLRL + V +++ + L C T + VAL +K + ++ ++N G
Sbjct: 25 KVLRLENKEIVAVYDKRFYL---C------TLKNNVAL--IKDEIHENHEFNFKVKLGIS 73
Query: 125 -LKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGG 183
+K R +WL+EK ELGA + P +++ H S IA F
Sbjct: 74 LIKLERFEWLIEKAVELGATEIIPFVSQ-HTISE----------------IAKFKFNKKI 116
Query: 184 QRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI--AEATPLVTALSSSRNE-------SSGL 234
+R +E++ N + + + F I EA + A + NE L
Sbjct: 117 ERFNEIMFNAAQQSYRNINIELSQLRTFEDILNEEAEIKIIAHEKNNNEFINQKINKDVL 176
Query: 235 IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSD 284
+VGPEG F+E+E+NK + G ++V LG LR ETA I LL+ + + +D
Sbjct: 177 FLVGPEGGFSEEEINKATQKGFSSVSLGKRILRAETAAIYLLSQVEVSND 226
>gi|52210978|emb|CAH36966.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
Length = 246
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 100/239 (41%), Gaps = 21/239 (8%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF + + + D H VLRL D + LF+G GG + ID+ G
Sbjct: 1 MPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKRG- 58
Query: 99 DVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
AL + P + + V A G G + DW++EK ELG +V PL T +
Sbjct: 59 ---ALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGV-V 114
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMK-----IDGLLPLVSQSKLAF 211
R G+ + + G + S G RL E+ P++ +D L + +L
Sbjct: 115 RLSGERADKRVSHWRGVVRASCEQCGRNRLPEIA---PVRGFDAWLDALPATPADGELRL 171
Query: 212 VAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
+ A+ +L ++ +++GPEG E G A+ LGP LR ET
Sbjct: 172 LLSPRASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAALSLGPRVLRTET 230
>gi|392395126|ref|YP_006431728.1| RsmE family RNA methyltransferase [Desulfitobacterium dehalogenans
ATCC 51507]
gi|390526204|gb|AFM01935.1| RNA methyltransferase, RsmE family [Desulfitobacterium dehalogenans
ATCC 51507]
Length = 245
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 112/233 (48%), Gaps = 17/233 (7%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQ 115
++G E H+ +VLRL+ D++ F+ G + I +I+ + +E + TQ
Sbjct: 16 LKGPEREHLVRVLRLAVGDQIIGFDNSGAEYKAVINKIEDQSVTCGIMEQDYPEVEARTQ 75
Query: 116 WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNFYYG 172
V+ A G KG + +W+++K TELG + PL T+ + L+ K D +
Sbjct: 76 --VYLAAGLSKGEKMEWVIQKGTELGMAGLIPLRTKRAVMKLEGSKAKDR-----VERWQ 128
Query: 173 FIANSAFVYGGQRLHEMVLNPP---MKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRN 229
I++ A R+ E L P ++ LLP +Q + + + T L + L +
Sbjct: 129 KISSEA-SKQSHRVREPKLFPVSDWKELKTLLPSTTQWLIPYESEKTKT-LQSVLRNFSP 186
Query: 230 ESSGLIIVGPEGDFTEKEVNKIVEA-GATAVGLGPHRLRVETATIALLATLML 281
+ +++GPEG F E EV E A +V LGP LR ETA IA L TL+L
Sbjct: 187 QEPIALLIGPEGGFDESEVLWAQENLQAQSVSLGPRILRAETAAIATL-TLVL 238
>gi|326799017|ref|YP_004316836.1| ribosomal RNA small subunit methyltransferase E [Sphingobacterium
sp. 21]
gi|326549781|gb|ADZ78166.1| Ribosomal RNA small subunit methyltransferase E [Sphingobacterium
sp. 21]
Length = 236
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 95/220 (43%), Gaps = 21/220 (9%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGL--IEGCIQRIDRTGLDVVALEDLKLVLPQHTQW 116
DE H +VLRL D + L +G+G L +E RT + ++ +E + +
Sbjct: 21 DESKHCARVLRLGIGDPIVLIDGRGSLFRVEIADAHPKRTKVRILTIER---NYGKRNHY 77
Query: 117 NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIAN 176
A T R +W +EK TE+G +TP++ E H + +++
Sbjct: 78 LHIAVAPTKNLDRLEWFLEKATEIGIDEITPIICE-HSERKELKIERLTK--------VV 128
Query: 177 SAFVYGGQRLHEMVLNPPMKIDGL---LPLVSQSKLAFVAIAEATPLVTALSSSRNESSG 233
+A V + +N P+ LP +K F+A VT + + S
Sbjct: 129 TAAVKQSLSAYHPKINEPIDFRRFAEELP----AKQHFIAHCLEATKVTLTAEIKPHGSY 184
Query: 234 LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
+++GPEGDF+ EV + G A+ LG RLR ETA +
Sbjct: 185 CVLIGPEGDFSPSEVEFAISKGCQAISLGNTRLRTETAAL 224
>gi|229597240|ref|YP_001807272.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia ambifaria
MC40-6]
Length = 255
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 103/239 (43%), Gaps = 21/239 (8%)
Query: 44 IPRFFSQGGIVRVEGD-----EFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF + + R + E +VLRL D + LF+G GG + ID+
Sbjct: 10 VPRFFVEAAL-RADATLTLPAEVARHAQVLRLQPGDTLALFDGSGGQYRARLVEIDKRN- 67
Query: 99 DVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
AL ++ P + + V A G G + DW++EK ELG +V PL T +
Sbjct: 68 ---ALAQIEAFDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGV-V 123
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMK-----IDGLLPLVSQSKLAF 211
+ G+ + G + S G R+ ++ P++ +D L + +L
Sbjct: 124 KLSGERADKRVAHWRGVVRASCEQCGRNRVPDVA---PVRGFGAWLDTLPAAPADGELRL 180
Query: 212 VAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
+ A+ +L + + +++GPEG + E N G TA+ LGP LR ET
Sbjct: 181 LLSPRASVPFASLPDAPPAAEVTLLIGPEGGLSPDEENAARAHGFTALSLGPRVLRTET 239
>gi|53725660|ref|YP_104018.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia mallei ATCC
23344]
gi|124384319|ref|YP_001027236.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia mallei NCTC
10229]
gi|126452434|ref|YP_001067709.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia pseudomallei
1106a]
gi|166998553|ref|ZP_02264411.1| RNA methyltransferase, RsmE family [Burkholderia mallei PRL-20]
gi|229008328|ref|YP_991742.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia mallei
SAVP1]
gi|229027672|ref|YP_001082829.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia mallei NCTC
10247]
gi|242315666|ref|ZP_04814682.1| 16S rRNA methyltransferase RsmE [Burkholderia pseudomallei 1106b]
gi|254178856|ref|ZP_04885510.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei ATCC
10399]
gi|254202737|ref|ZP_04909100.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei FMH]
gi|254208079|ref|ZP_04914429.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei JHU]
gi|254299290|ref|ZP_04966740.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei
406e]
gi|403520141|ref|YP_006654275.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia pseudomallei
BPC006]
gi|52429083|gb|AAU49676.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei ATCC
23344]
gi|124292339|gb|ABN01608.1| RNA methyltransferase, RsmE family [Burkholderia mallei NCTC 10229]
gi|126226076|gb|ABN89616.1| RNA methyltransferase, RsmE family [Burkholderia pseudomallei
1106a]
gi|147746984|gb|EDK54061.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei FMH]
gi|147751973|gb|EDK59040.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei JHU]
gi|157808975|gb|EDO86145.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei
406e]
gi|160694770|gb|EDP84778.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei ATCC
10399]
gi|242138905|gb|EES25307.1| 16S rRNA methyltransferase RsmE [Burkholderia pseudomallei 1106b]
gi|243065237|gb|EES47423.1| RNA methyltransferase, RsmE family [Burkholderia mallei PRL-20]
gi|403075784|gb|AFR17364.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia pseudomallei
BPC006]
Length = 255
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 99/239 (41%), Gaps = 21/239 (8%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF + + + D H VLRL D + LF+G GG + ID+ G
Sbjct: 10 VPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKRG- 67
Query: 99 DVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
AL + P + + V A G G + DW++EK ELG +V PL T +
Sbjct: 68 ---ALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGV-V 123
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMK-----IDGLLPLVSQSKLAF 211
R G+ + + G + S G RL E+ P++ +D L + L
Sbjct: 124 RLSGERADKRVSHWRGVVRASCEQCGRNRLPEIA---PVRGFDAWLDALPATPADGALRL 180
Query: 212 VAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
+ A+ +L ++ +++GPEG E G A+ LGP LR ET
Sbjct: 181 LLSPRASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAALSLGPRVLRTET 239
>gi|311069145|ref|YP_003974068.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus atrophaeus 1942]
gi|419820207|ref|ZP_14343819.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus atrophaeus C89]
gi|310869662|gb|ADP33137.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus atrophaeus 1942]
gi|388475619|gb|EIM12330.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus atrophaeus C89]
Length = 256
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 109/243 (44%), Gaps = 37/243 (15%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQ 115
+ G++ H+T V+R+S D + + G + L V+ E + ++ + T
Sbjct: 21 ITGEDVHHITNVMRMSAGDEIICCSLDG--------HEAKCELQSVSKEKVACLVSEWTG 72
Query: 116 WN------VFAAFGTLKGGRADWLVEKCTELG---------AQSVTPLLTELHLQSR--- 157
N V A G KG + +W+++K TELG A+SV L + + R
Sbjct: 73 ANRELPIKVHIASGLPKGDKLEWIIQKGTELGSSMFLPFQAARSVVKLDDKKAKKKRERW 132
Query: 158 -KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAE 216
KI + Y I + A V+ Q+L L+ D + +S E
Sbjct: 133 TKIAKEA--AEQSYRNEIPDVAPVHTFQQL----LSKVQDFDKCVVAYEESSKQ----GE 182
Query: 217 ATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALL 276
+ LV+ LSS ++SS LII GPEG TE EV ++ + GA GLGP LR ETA + L
Sbjct: 183 TSALVSVLSSLPDQSSLLIIFGPEGGLTESEVEQLKDKGAVPCGLGPRILRTETAPLYAL 242
Query: 277 ATL 279
+
Sbjct: 243 GAV 245
>gi|85714212|ref|ZP_01045200.1| hypothetical protein NB311A_14712 [Nitrobacter sp. Nb-311A]
gi|85698659|gb|EAQ36528.1| hypothetical protein NB311A_14712 [Nitrobacter sp. Nb-311A]
Length = 256
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 105/226 (46%), Gaps = 31/226 (13%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCI---QRIDRTGLDVVALEDLKLVLPQHTQWNVF 119
++ VLRL T V +FNG+ G I +R++ L++VA + LP +V
Sbjct: 39 YLGNVLRLGTGTNVLVFNGRDGEWRAAIFGRKRLE--NLEIVAATRKQDQLP-----DVR 91
Query: 120 AAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDN---GFLSCNFYYGFIAN 176
AF LK R D++V+K E+G ++ PLLT R G+ + G ++
Sbjct: 92 YAFAPLKHARLDYMVQKAVEMGVCALQPLLTRFTQVGRVNGERMRANVIEAAEQCGILSL 151
Query: 177 SAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFV---AIAEATPLVTALSSSRNESSG 233
+A + P +D L +L A + A PL T L +R + G
Sbjct: 152 AA------------VEEPASLDQWLGRRGPERLLVFCDEAASTANPLRT-LEPARRVAQG 198
Query: 234 L-IIVGPEGDFTEKE-VNKIVEAGATAVGLGPHRLRVETATIALLA 277
+ ++VGPEG F E E VN + + + LGP LR +TA +A+LA
Sbjct: 199 IDVLVGPEGGFAEDERVNLLKQPNVLRLSLGPRILRADTAAVAVLA 244
>gi|365086138|ref|ZP_09327391.1| 16S ribosomal RNA methyltransferase RsmE [Acidovorax sp. NO-1]
gi|363417724|gb|EHL24785.1| 16S ribosomal RNA methyltransferase RsmE [Acidovorax sp. NO-1]
Length = 245
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 88/207 (42%), Gaps = 7/207 (3%)
Query: 65 TKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAFGT 124
+VLRL D + LFNG+GG E + ++ R+ DV L + + V G
Sbjct: 26 VQVLRLQPGDALMLFNGEGGEFEATVLKMGRS--DVRVLVGTHHAVEREAPRAVHLLAGI 83
Query: 125 LKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQ 184
R DWLVEK TELG S+TPL+ E + K G+ + + G
Sbjct: 84 TANERMDWLVEKATELGVASITPLVAERSVLKLK-GERAEKKIAHWQAVAVAACEQCGRN 142
Query: 185 RL---HEMV-LNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPE 240
R+ H V L M+ P + +L A PL TA + S + + GPE
Sbjct: 143 RVPVVHNAVDLAAWMRTQVQAPALDVQRLLLSLRAGTAPLHTAAALSPPSGPVVFLSGPE 202
Query: 241 GDFTEKEVNKIVEAGATAVGLGPHRLR 267
G + E + ++ G V LGP LR
Sbjct: 203 GGLSGAEEDLALQHGFAPVTLGPRVLR 229
>gi|357039504|ref|ZP_09101297.1| Ribosomal RNA small subunit methyltransferase E [Desulfotomaculum
gibsoniae DSM 7213]
gi|355357867|gb|EHG05637.1| Ribosomal RNA small subunit methyltransferase E [Desulfotomaculum
gibsoniae DSM 7213]
Length = 247
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 105/244 (43%), Gaps = 12/244 (4%)
Query: 44 IPRFFS-----QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF QG V V G E H+ +VLRL D + L +G G E I+ + TG
Sbjct: 1 MPRFFVAPQQVQGDSVIVTGSEVHHIKRVLRLGPGDVITLLDGCGNFYESRIEGL--TGE 58
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
V + V V G KG R D +++K TELGA + P+ + + +
Sbjct: 59 TVTCRVLRQGVAGGEPPLRVVLVQGLAKGDRMDTVIQKGTELGAVAFWPVFCKRSVV--R 116
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT 218
+ + S + IA A + L VL P ++ L L+ L + + T
Sbjct: 117 LDASKKASRLRRWQRIAAGAAKQCRRALVPEVLEP-LEWSKALDLMPPGALVLIPWEDET 175
Query: 219 --PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALL 276
PL L S +++GPEG EV + G V LGP LR ETA A++
Sbjct: 176 VCPLKEVLQSRPRPDEVYLLIGPEGGLENYEVEEARLRGGIPVTLGPRILRTETAGPAVV 235
Query: 277 ATLM 280
A ++
Sbjct: 236 AMIL 239
>gi|345865767|ref|ZP_08817939.1| ribosomal RNA small subunit methyltransferase E [endosymbiont of
Tevnia jerichonana (vent Tica)]
gi|345123116|gb|EGW53024.1| ribosomal RNA small subunit methyltransferase E [endosymbiont of
Tevnia jerichonana (vent Tica)]
Length = 476
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 114/245 (46%), Gaps = 23/245 (9%)
Query: 45 PRFFSQ-----GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PR F+ G +++E + H+ KVLRL + ++ LFNG G + DR ++
Sbjct: 236 PRIFTSQPLQTGHHIQLEAEPSHHLLKVLRLRSGAQLRLFNGDGREFSASLISSDRNRVE 295
Query: 100 VVALEDLKLVLPQHTQWN--VFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHL 154
V +L L + + + + A G +G R D+ ++K ELG ++ PL+TE + L
Sbjct: 296 V----ELHQCLRKEAKDSLPITLAIGISRGERMDFALQKSVELGVSAIVPLVTERCVVRL 351
Query: 155 QSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI 214
R+ ++ I SA G R L P + D +L + + + +
Sbjct: 352 DPRRQQKR-----MTHWQKIVISACEQSG-RCRVPQLEQPGRFDEMLQQLP-ATMRLMLD 404
Query: 215 AEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274
A+ + LSS + +++VGPEG + +E +AG V LGP LR ETA +A
Sbjct: 405 HRASESLHDLSS--RPDAIVLLVGPEGGLSPEERRLAQQAGFKGVRLGPRVLRTETAPLA 462
Query: 275 LLATL 279
LA +
Sbjct: 463 ALAAI 467
>gi|326202057|ref|ZP_08191927.1| protein of unknown function DUF558 [Clostridium papyrosolvens DSM
2782]
gi|325987852|gb|EGD48678.1| protein of unknown function DUF558 [Clostridium papyrosolvens DSM
2782]
Length = 250
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 107/256 (41%), Gaps = 40/256 (15%)
Query: 46 RFFSQ-----GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV 100
R+F + G + + G++F H+ KVLR D V G G I+ I+ + +
Sbjct: 3 RYFVEEAQIANGRINIVGEDFQHLKKVLRAQLKDEVTACCG-GFDYTAEIEEINDSSIIC 61
Query: 101 VALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS---- 156
+ + K + +F G K + + +++KC ELG + P++T+ +
Sbjct: 62 IITDVNKNFTESPLKVTLFQ--GLPKSDKMELIIQKCVELGVWEIVPVITDRCVSRINTD 119
Query: 157 ----------RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQ 206
+KI CN G I N + P+ + SQ
Sbjct: 120 KDAKNKLARWQKIAREAAKQCN--RGTIPNILY--------------PITFKEAVEKASQ 163
Query: 207 SKLAFVAIAEATPLVTALSSSRNE--SSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPH 264
++LA + + + + R E +SG II+GPEG F EKEV + G + LGP
Sbjct: 164 AELAIIPYEKESAVGLKNIVPRYEGITSGSIIIGPEGGFEEKEVQMAEDRGVKKISLGPR 223
Query: 265 RLRVETATIALLATLM 280
LR ETA + L+ LM
Sbjct: 224 ILRTETAGMVALSLLM 239
>gi|289209554|ref|YP_003461620.1| hypothetical protein TK90_2394 [Thioalkalivibrio sp. K90mix]
gi|288945185|gb|ADC72884.1| protein of unknown function DUF558 [Thioalkalivibrio sp. K90mix]
Length = 255
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 100/225 (44%), Gaps = 17/225 (7%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL--DVVALEDLKLVLPQHTQW 116
D + T VLRL + +F+G+G R++ TG L D + P
Sbjct: 24 DRLHYATNVLRLKNDAACRVFDGQGNEFHA---RLEVTGRRSGTFHLGD-RAAAPTTPAR 79
Query: 117 NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCN--FYYGFI 174
+ G +G D V+K ELG + P+L E +SR + L + G I
Sbjct: 80 PIELLQGIARGDHMDLAVQKAVELGISVIRPVLCE---RSRSAAAHRGLDKRQAHWAGII 136
Query: 175 ANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSS-SRNESSG 233
+A G L +V PP +D L S L VA + PL AL S + +SG
Sbjct: 137 QAAAEQCGRNELPLLV--PPATLDEALD-ASSPGLDLVADEQGPPLSGALDSFGKGGTSG 193
Query: 234 L--IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALL 276
I++GPEG T++E + AG AV +GP LR ETA I+LL
Sbjct: 194 RVRILIGPEGGLTDEERIQARNAGFQAVAMGPRTLRTETAAISLL 238
>gi|87306779|ref|ZP_01088926.1| hypothetical protein DSM3645_10607 [Blastopirellula marina DSM
3645]
gi|87290958|gb|EAQ82845.1| hypothetical protein DSM3645_10607 [Blastopirellula marina DSM
3645]
Length = 240
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 99/231 (42%), Gaps = 18/231 (7%)
Query: 46 RFFSQ----GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD-- 99
RFF + G V ++G E H+ V+R +V LF+ G I + R
Sbjct: 4 RFFLEAPITGDTVEIDGPEAHHLLHVMRAKIGAQVTLFDDSGAQFAAEIIAVGRKSATAR 63
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
VVA +++ LP + AA KG R WLVEKC ELG +TPL TE R +
Sbjct: 64 VVARQEVSRELP--ISLTIAAALP--KGDRQRWLVEKCVELGVTDLTPLDTE-----RSV 114
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
S + G++ +++ RL M + + S S + +A +A
Sbjct: 115 SLKKEKSLDKLRGYVIDASKQCERNRL--MRIADSAALPAFWNHASLSAVRLIADPDACE 172
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
V L + + ++ +GPEG F+ E + AG LG LR+ET
Sbjct: 173 SVADLLPA-EPTDVIVAIGPEGGFSPDEYQAALSAGWRGFRLGKRILRIET 222
>gi|424898458|ref|ZP_18322032.1| RNA methyltransferase, RsmE family [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393182685|gb|EJC82724.1| RNA methyltransferase, RsmE family [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 245
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 101/221 (45%), Gaps = 12/221 (5%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
S G + D+F ++ VLR+ + LFNG+ G + + R + + A+E+ +
Sbjct: 16 LSLGAALEANADQFNYLANVLRMEEGGEILLFNGRDGEWKAALTFPTRKRIQLTAIEETR 75
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
PQ ++ F LK GR D+LV+K E+GA + P++T+ H+Q KI + L
Sbjct: 76 ---PQPAPCDLHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQ-HVQG-KITNLDKLRA 130
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSS 227
N A V G + E P +D L + ++ + + + S
Sbjct: 131 NVVEA--AEQCGVLGIPDVAE----PVRLLDLLDRWPKERRIIYCDEGDVGQNPLPVLSE 184
Query: 228 RNESSGLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLR 267
E ++VGPEG F+E+E ++ TA+ LGP LR
Sbjct: 185 IRERHLALLVGPEGGFSEEERERLRSLDFVTAIPLGPRILR 225
>gi|374621041|ref|ZP_09693575.1| 16S rRNA m(3)U-1498 methyltransferase [gamma proteobacterium
HIMB55]
gi|374304268|gb|EHQ58452.1| 16S rRNA m(3)U-1498 methyltransferase [gamma proteobacterium
HIMB55]
Length = 243
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 102/219 (46%), Gaps = 14/219 (6%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL--DVVALEDLKLVLPQHTQWNVFA 120
H+ +VLR+ +D V +FNG G I + +T + D+++ ED P T
Sbjct: 27 HLARVLRVKVDDAVTVFNGDGDNYYSRISAVTKTNVTVDLLSKEDPCNESPLATH----L 82
Query: 121 AFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFV 180
KG R +W ++K TELG S++P+L++ ++ + ++ I SA
Sbjct: 83 GLAVSKGDRFEWAIKKATELGVSSISPILSQR--VDVRLAPERWKKKQDHWQQIVISACE 140
Query: 181 YGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPE 240
G+ + V +PP + G + V + + L AL ++ S L+I GPE
Sbjct: 141 QSGRAVVPEV-HPPQPLGGWVETVKADQKFCLHPG----LSNALPATPPNSVALLI-GPE 194
Query: 241 GDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
G ++ EV ++G + LGP LR ETA + L+ +
Sbjct: 195 GGLSDNEVTLASDSGFLGLNLGPRILRTETAPLVALSVV 233
>gi|115350589|ref|YP_772428.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia ambifaria
AMMD]
gi|115280577|gb|ABI86094.1| 16S rRNA m(3)U-1498 methyltransferase [Burkholderia ambifaria AMMD]
Length = 255
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 104/239 (43%), Gaps = 21/239 (8%)
Query: 44 IPRFFSQGGIVRVEGD-----EFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF + + R + E +VLRL D + LF+G GG + ID+
Sbjct: 10 LPRFFVEAAL-RADATLTLPAEVARHAQVLRLQPGDTLALFDGSGGQYRARLVEIDKRN- 67
Query: 99 DVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
AL ++ P + + V A G G + DW++EK ELG +V PL T +
Sbjct: 68 ---ALAQIEAFDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLTTARGV-V 123
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMK-----IDGLLPLVSQSKLAF 211
+ G+ + G + S G R+ ++ P++ +D L + +L
Sbjct: 124 KLSGERADKRVAHWRGVVRASCEQCGRNRVPDVA---PVRGFGAWLDTLPAAPADGELRL 180
Query: 212 VAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
+ A+ +L + ++ +++GPEG + E N G TA+ LGP LR ET
Sbjct: 181 LLSPRASIPFASLPDAPPAAAVTLLIGPEGGLSPDEENVARAHGFTALSLGPRVLRTET 239
>gi|163816746|ref|ZP_02208109.1| hypothetical protein COPEUT_02936 [Coprococcus eutactus ATCC 27759]
gi|158448003|gb|EDP24998.1| RNA methyltransferase, RsmE family [Coprococcus eutactus ATCC
27759]
Length = 245
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 110/246 (44%), Gaps = 16/246 (6%)
Query: 46 RFFSQ------GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
RFF G + + G + H+ VLRL + + + +G+G I RID +
Sbjct: 3 RFFVDIDGRDIGTDIEITGGDVNHIKNVLRLKIGEEILVSDGRGRDYTCRISRIDPDKV- 61
Query: 100 VVALEDLKLVLPQ-HTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
V +ED+ + + +F + K + D +V+K ELG + P+ T + K
Sbjct: 62 VCNIEDISDNFAELPVKVTLFQGYP--KSDKMDLIVQKMVELGVCRIVPVFTSRTIV--K 117
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT 218
+ Y IA SA G+ + + P+ L + S+ + + EA
Sbjct: 118 LDQKKATKKTERYRTIAESAAKQSGRGIVPEI-TEPVSFAKALDMASELDMNIIPYEEAE 176
Query: 219 PLVTA---LSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIAL 275
+ + +++ R + S I +GPEG F +EV + V AGA + LG LR ETA +A+
Sbjct: 177 GIEESRQIIANVRGKRSLGIFIGPEGGFAREEVEEAVAAGAECITLGHRILRTETAGLAV 236
Query: 276 LATLML 281
+A +M
Sbjct: 237 MAIIMF 242
>gi|336414888|ref|ZP_08595231.1| hypothetical protein HMPREF1017_02339 [Bacteroides ovatus
3_8_47FAA]
gi|335941749|gb|EGN03600.1| hypothetical protein HMPREF1017_02339 [Bacteroides ovatus
3_8_47FAA]
Length = 232
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 98/242 (40%), Gaps = 49/242 (20%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQW-- 116
+E H +VLRLS D + L +GKG + I + ++K + Q W
Sbjct: 18 EEAQHCIRVLRLSIGDEITLTDGKGNFYKAEIT----VATNKRCFVNIKETIFQEPLWPC 73
Query: 117 NVFAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
++ A K R +W EK TE+G +T FL+C F
Sbjct: 74 HLHIAMAPTKNMDRNEWFAEKATEIGFDELT-----------------FLNCRF------ 110
Query: 176 NSAFVYGGQRLHEMV--------------LNPPMKIDGLL--PLVSQSKLAFVAIAEATP 219
+ V +R+ +++ LN ++ D + Q +A E
Sbjct: 111 SERKVIKTERIEKILVSAIKQSLKARLPKLNDMIEFDRFIGQEFKGQKFIAHCYEGEKPL 170
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
L L + L+++GPEGDF+E+EV K +E G + LG RLR ETA + TL
Sbjct: 171 LKNVLKPGED---ALVLIGPEGDFSEEEVKKAIERGFVPISLGKSRLRTETAALVACHTL 227
Query: 280 ML 281
L
Sbjct: 228 NL 229
>gi|15595616|ref|NP_249110.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
PAO1]
gi|218889161|ref|YP_002438025.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
LESB58]
gi|254237347|ref|ZP_04930670.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|254243517|ref|ZP_04936839.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|392981832|ref|YP_006480419.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
DK2]
gi|416864742|ref|ZP_11915497.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
138244]
gi|418588411|ref|ZP_13152423.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
MPAO1/P1]
gi|418593489|ref|ZP_13157334.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
MPAO1/P2]
gi|419755901|ref|ZP_14282253.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
PADK2_CF510]
gi|421151486|ref|ZP_15611099.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
ATCC 14886]
gi|421178329|ref|ZP_15635944.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
E2]
gi|421515035|ref|ZP_15961721.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
PAO579]
gi|451988199|ref|ZP_21936338.1| Ribosomal RNA small subunit methyltransferase E [Pseudomonas
aeruginosa 18A]
gi|9946275|gb|AAG03808.1|AE004479_3 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
gi|126169278|gb|EAZ54789.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|126196895|gb|EAZ60958.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|218769384|emb|CAW25144.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58]
gi|334834973|gb|EGM13884.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
138244]
gi|375040807|gb|EHS33539.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
MPAO1/P1]
gi|375047580|gb|EHS40124.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
MPAO1/P2]
gi|384397563|gb|EIE43974.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
PADK2_CF510]
gi|392317337|gb|AFM62717.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
DK2]
gi|404348763|gb|EJZ75100.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
PAO579]
gi|404527242|gb|EKA37411.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
ATCC 14886]
gi|404548659|gb|EKA57606.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
E2]
gi|451754175|emb|CCQ88861.1| Ribosomal RNA small subunit methyltransferase E [Pseudomonas
aeruginosa 18A]
gi|453045798|gb|EME93516.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
PA21_ST175]
Length = 240
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 99/216 (45%), Gaps = 10/216 (4%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +VLR +T D V+LF+G G G + + + + V E + + +
Sbjct: 26 YIGRVLRHATGDAVQLFDGSGREYLGELVEVGKKNVRVELRE--QFAGQPDSPLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TP+++E ++ D ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVAEITPIVSER--CEVRLKDERADKRLQHWRQVAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G R +++PP+ ++ L L V A PL + SR +VGPEG
Sbjct: 142 G-RSSLPLIHPPLALEDWL-RGRDDDLRLVLHPVAAPLASHAPPSRLA----FLVGPEGG 195
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
++ EV + AG + LGP LR ETA + LA
Sbjct: 196 LSDAEVEQAQAAGFHSARLGPRVLRTETAPVVALAV 231
>gi|167571263|ref|ZP_02364137.1| hypothetical protein BoklC_15582 [Burkholderia oklahomensis C6786]
Length = 253
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 104/249 (41%), Gaps = 15/249 (6%)
Query: 40 SRGGIPRFFSQG-----GIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRID 94
S IPRFF + + D H+ +VLRL+ D V LFNG GG +D
Sbjct: 4 STSAIPRFFVDAELQSDATLALPADVARHV-QVLRLAAGDAVTLFNGAGGQYRAEFVELD 62
Query: 95 RTGLDVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTEL 152
+ AL + P + + + A G G + DWL+EK ELGA ++ PL T
Sbjct: 63 KR----AALVRIGAFTPADVEAPYRITLAQGIAGGDKMDWLIEKAVELGAAAIAPLSTAR 118
Query: 153 HLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEM--VLNPPMKIDGLLPLVSQSKLA 210
+ R G+ + G + S G R+ ++ V + + L + +L
Sbjct: 119 GV-VRLSGERAQKRVAHWQGVVRASCEQCGRNRVPDVAPVRDIHAWLAALPAAPAPDELR 177
Query: 211 FVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
+ A+ L +++GPEG E E G ++ LGP LR ET
Sbjct: 178 LMLSPRASVGFADLPGMPPAGGVTLLIGPEGGLAPDEEEAARERGFASILLGPRVLRTET 237
Query: 271 ATIALLATL 279
A IA+LA L
Sbjct: 238 AGIAMLAAL 246
>gi|113869103|ref|YP_727592.1| 16S ribosomal RNA methyltransferase RsmE [Ralstonia eutropha H16]
gi|113527879|emb|CAJ94224.1| conserved hypothetical protein [Ralstonia eutropha H16]
Length = 250
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 102/247 (41%), Gaps = 18/247 (7%)
Query: 45 PRFFSQGG--IVRVEGD-----EFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRI-DRT 96
PRFF G ++ E D +VLRL D + LF+G+GG + + R
Sbjct: 3 PRFFVGGTDTVLAAESDFPLPEPVVRHVQVLRLVPGDAMTLFDGRGGSHAATLVELGKRH 62
Query: 97 GLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
L + D P + V A G G + DWL+EK ELG ++ PL +
Sbjct: 63 ALARIGAHDAAEAEPP---FRVTLAQGLAGGDKMDWLIEKAVELGVTAIQPLQASRSV-V 118
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAE 216
R G+ + + + G RL E+ P + L + +
Sbjct: 119 RLSGERAHKRHAHWQALVQAACEQCGRNRLPEVA--PVANFETWLAQSAAGGARLLVSPR 176
Query: 217 ATPLVTALSSSRNES---SGL-IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
AT + A + + ES G+ +++GPEG E + G T V LGP LR ETA
Sbjct: 177 ATHSLPAFIAEQRESLLAGGVTLLIGPEGGLAPDEEQAARQVGFTGVSLGPRILRTETAG 236
Query: 273 IALLATL 279
+A LATL
Sbjct: 237 LACLATL 243
>gi|49082184|gb|AAT50492.1| PA0419, partial [synthetic construct]
Length = 241
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 99/216 (45%), Gaps = 10/216 (4%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +VLR +T D V+LF+G G G + + + + V E + + +
Sbjct: 26 YIGRVLRHATGDAVQLFDGSGREYLGELVEVGKKNVRVELRE--QFAGQPDSPLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TP+++E ++ D ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVAEITPIVSER--CEVRLKDERADKRLQHWRQVAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G R +++PP+ ++ L L V A PL + SR +VGPEG
Sbjct: 142 G-RSSLPLIHPPLALEDWL-RGRDDDLRLVLHPVAAPLASHAPPSRLA----FLVGPEGG 195
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
++ EV + AG + LGP LR ETA + LA
Sbjct: 196 LSDAEVEQAQAAGFHSARLGPRVLRTETAPVVALAV 231
>gi|429211462|ref|ZP_19202628.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas sp. M1]
gi|428158876|gb|EKX05423.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas sp. M1]
Length = 239
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 100/224 (44%), Gaps = 26/224 (11%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV--------VALEDLKLVLPQHT 114
++ +VLR + D V+LF+G G G + + + + V +A L+L L Q
Sbjct: 26 YIGRVLRHAAGDAVQLFDGSGQEFLGELVEVGKKNVRVELRESFAGLAESPLRLHLGQ-- 83
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
G +G R DW ++K TELGA +TP+++E ++ D ++ I
Sbjct: 84 --------GLSRGERMDWAIQKATELGAARITPIVSER--CEVRLKDERADKRTAHWRQI 133
Query: 175 ANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGL 234
A SA G+ + + P + L + KL +AE L+S S
Sbjct: 134 AISACEQCGRSVLPQIDAPISLAEWLQATEADLKLVLHPVAEP------LASHARPGSLA 187
Query: 235 IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
++GPEG ++ EV + AG A LGP LR ETA + L+
Sbjct: 188 FLIGPEGGLSDAEVEQARAAGFHAARLGPRVLRTETAPVVALSV 231
>gi|146302321|ref|YP_001196912.1| 16S ribosomal RNA methyltransferase RsmE [Flavobacterium johnsoniae
UW101]
gi|146156739|gb|ABQ07593.1| protein of unknown function DUF558 [Flavobacterium johnsoniae
UW101]
Length = 235
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 95/217 (43%), Gaps = 12/217 (5%)
Query: 57 EGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQW 116
+ +E H+ KVLR +D + + NG+G L E I V L K P+
Sbjct: 19 DKEESKHIIKVLRKKDSDILHVTNGQGLLFETEITLASDNKCIVSVLSIKKSPEPKFRLH 78
Query: 117 NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIAN 176
A T R +W +EK TE+G Q +TP++ + + + I F +N
Sbjct: 79 --LAVAPTKMNDRFEWFLEKATEIGIQEITPIICD-RSERKVINLERFEKIVLSAMKQSN 135
Query: 177 SAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLII 236
F+ LN + + +Q L F+A E T + S ++ + ++
Sbjct: 136 EMFLPK--------LNDAVSFKEFIKQKNQG-LQFIAHCEETDKKSLKESLKSNENVTLL 186
Query: 237 VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
+GPEGDF+EKE+ +E V LG RLR ETA +
Sbjct: 187 IGPEGDFSEKEIALALENNYKPVTLGNTRLRTETAAV 223
>gi|182679209|ref|YP_001833355.1| hypothetical protein Bind_2249 [Beijerinckia indica subsp. indica
ATCC 9039]
gi|182635092|gb|ACB95866.1| protein of unknown function DUF558 [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 250
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 109/255 (42%), Gaps = 27/255 (10%)
Query: 45 PRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PR + GG V ++ + ++ VLRL D + +FNG+ G ++ +G
Sbjct: 9 PRLYLDQPLRAGGTVALDKSQAHYLCTVLRLVAGDHILVFNGREGEWRAALKE---SGRK 65
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
V +E ++ V Q ++ F LK R D++ +K E+GA + PL T +
Sbjct: 66 TVQIEPIEQVRTQEPDNDLHYLFAPLKHARLDYMAQKAVEMGASLLQPLFT-------RR 118
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
N ++ +A G L E+ +K+D L Q+++ V E P
Sbjct: 119 TQNERINLERLRANAIEAAEQCGILTLPEIA--EAVKLDAYLARRDQNRV-LVFCDEDAP 175
Query: 220 LVTALSSSRNE--------SSGLIIVGPEGDFTEKEVNKIV-EAGATAVGLGPHRLRVET 270
+ L++ R +++GPEG F E + +V + + LGP LR +T
Sbjct: 176 PIGPLAALREALRPGGVACRGADVLIGPEGGFDATERDLLVSQPNHIRISLGPRILRADT 235
Query: 271 ATIALLATLMLCSDS 285
A +A+LA + D
Sbjct: 236 AAVAVLALVQAIRDE 250
>gi|281200678|gb|EFA74896.1| hypothetical protein PPL_11930 [Polysphondylium pallidum PN500]
Length = 275
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 109/248 (43%), Gaps = 26/248 (10%)
Query: 46 RFFSQG------GIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
RFF + G VR++G + H+ K LRL VELF+G +I I I + D
Sbjct: 6 RFFVENIPLMLRGSVRLDGSQHLHLKKSLRLKEGQEVELFDGNQSVI-AVIDSIGKNHSD 64
Query: 100 VVAL---EDLKLVLPQHT-QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQ 155
++ E QHT + A K R DW+VEK TEL +S+ + T+
Sbjct: 65 LIISKINESTSSADNQHTFDSRIDIASSLPKASRGDWMVEKLTELDVRSLYLIETDYSKS 124
Query: 156 SR--KIGDNGFLSCNFYYGFIANSA----FVYGGQRLHEMVLNPPMKIDGLLPLVSQSKL 209
S+ I DN F + Y I +A V H +V +P + L L+ + K
Sbjct: 125 SKSSNITDNKF---DRYQRIIIEAAKQSKIVKDNLWTHIIVGHPTGQ--PLPQLIEKFKT 179
Query: 210 AFVAIAEATPL---VTALSSSRNESSGLIIVGPEGDFTEKEVNKIVE-AGATAVGLGPHR 265
++ V +LS + L++VG EG FTE E+NK+ + + G
Sbjct: 180 DYIKNNNDNNNNNSVESLSIPKVSPRLLVMVGSEGGFTENEINKLSKLSNVYPTNFGNSI 239
Query: 266 LRVETATI 273
LR+ET ++
Sbjct: 240 LRMETFSL 247
>gi|120555960|ref|YP_960311.1| 16S ribosomal RNA methyltransferase RsmE [Marinobacter aquaeolei
VT8]
gi|120325809|gb|ABM20124.1| 16S rRNA m(3)U-1498 methyltransferase [Marinobacter aquaeolei VT8]
Length = 244
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 103/248 (41%), Gaps = 31/248 (12%)
Query: 44 IPRFFSQ-----GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
IPR F+ GG +++ + H+ +VLR+ + LFNG G I + +
Sbjct: 3 IPRIFTDSPLAVGGQCQLDDNAANHVGRVLRMQAGQALLLFNGDGQDYHATITEAGKKHV 62
Query: 99 DVVALE--------DLKLVLPQHTQWNVFAAFGTL-KGGRADWLVEKCTELGAQSVTPLL 149
V E L++VL Q TL KG R D+ V+K E+G + PL
Sbjct: 63 QVAVTEAAENETESSLRVVLAQ-----------TLSKGDRMDYAVQKAVEMGVSEIVPLT 111
Query: 150 TELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKL 209
TE + GD + ++A G R+ E + P M + L L
Sbjct: 112 TE-RCDVKLKGDREDKRLRHWQQVAISAAEQCGRARVPE--IQPVMTVQQWLEHARACDL 168
Query: 210 AFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVE 269
V +L++ SS +++GPEG T +E+ + G V LGP LR E
Sbjct: 169 RLVLHHRTE---RSLNTLEKPSSIALMIGPEGGLTAEEIALAEDNGFLPVALGPRVLRTE 225
Query: 270 TATIALLA 277
TA +A +A
Sbjct: 226 TAPVAAIA 233
>gi|84685244|ref|ZP_01013143.1| hypothetical protein 1099457000257_RB2654_10264 [Maritimibacter
alkaliphilus HTCC2654]
gi|84666976|gb|EAQ13447.1| hypothetical protein RB2654_10264 [Rhodobacterales bacterium
HTCC2654]
Length = 241
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 106/235 (45%), Gaps = 24/235 (10%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
+G + +E D+ ++ V+R + DRV LFNG+ G + G L L
Sbjct: 15 LREGQTIPLERDKAHYLFGVMRQAVGDRVALFNGRDG---EWTAEVTLAGKRNGVLTCLG 71
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
PQ +++ F +K R D++VEK E+GA + P+LTE R +
Sbjct: 72 QAAPQLDPPDLWLMFAPIKKARTDFIVEKAAEMGASRIVPVLTEFTNSER-------VRV 124
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLP-LVSQSKLAFVAIA---EATPLVTA 223
+ +A GG + E+ P K+D LL +L F A E PL A
Sbjct: 125 DRLQAHAVEAAEQCGGTFVPEVA--EPEKLDRLLDGWDGARRLMFCDEALAGENKPLSGA 182
Query: 224 LSSSRNESSGLIIVGPEGDFTEKEVNKI--VEAGATAVGLGPHRLRVETATIALL 276
+ I++GPEG F++ E ++ +E+ A +V LGP LR +TA +A +
Sbjct: 183 AG-----APWAILIGPEGGFSDAERKRLHGMES-AVSVSLGPRILRADTAAVAAM 231
>gi|238561245|ref|ZP_00442303.2| RNA methyltransferase, RsmE family [Burkholderia mallei GB8 horse
4]
gi|121227903|gb|ABM50421.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei
SAVP1]
gi|126242088|gb|ABO05181.1| RNA methyltransferase, RsmE family [Burkholderia mallei NCTC 10247]
gi|238524927|gb|EEP88357.1| RNA methyltransferase, RsmE family [Burkholderia mallei GB8 horse
4]
Length = 246
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 99/239 (41%), Gaps = 21/239 (8%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF + + + D H VLRL D + LF+G GG + ID+ G
Sbjct: 1 MPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKRG- 58
Query: 99 DVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
AL + P + + V A G G + DW++EK ELG +V PL T +
Sbjct: 59 ---ALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGV-V 114
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMK-----IDGLLPLVSQSKLAF 211
R G+ + + G + S G RL E+ P++ +D L + L
Sbjct: 115 RLSGERADKRVSHWRGVVRASCEQCGRNRLPEIA---PVRGFDAWLDALPATPADGALRL 171
Query: 212 VAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
+ A+ +L ++ +++GPEG E G A+ LGP LR ET
Sbjct: 172 LLSPRASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAALSLGPRVLRTET 230
>gi|220929216|ref|YP_002506125.1| hypothetical protein Ccel_1795 [Clostridium cellulolyticum H10]
gi|219999544|gb|ACL76145.1| protein of unknown function DUF558 [Clostridium cellulolyticum H10]
Length = 245
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 107/248 (43%), Gaps = 41/248 (16%)
Query: 52 GIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGL---IEGCIQRIDRTGLDVVALEDLKL 108
G V + ++F H+ KVLR D EL GG +E I+ I + + V + K
Sbjct: 9 GRVNIIEEDFQHLKKVLRAQIKD--ELTVCCGGFDYTVE--IEEIKNSSIVCVITDINKN 64
Query: 109 VLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS------------ 156
+ +F G K + + +++KC ELG + P++TE +
Sbjct: 65 YTESSLKVTLFQ--GLPKSDKMELIIQKCVELGVWEIVPVMTERCVSRINTDKDAQNKLA 122
Query: 157 --RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI 214
+KI CN G I N ++ P+ + + SQ++L+ +
Sbjct: 123 RWQKIAREAAKQCN--RGIIPN--------------IHYPITFKEAVEMASQAELSVIPY 166
Query: 215 AE--ATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
+ A L ++ + +SG II+GPEG F EKEV + G + LGP LR ETA
Sbjct: 167 EKESAVGLKNVVARYQGITSGSIIIGPEGGFEEKEVKMAEDRGVKKISLGPRILRTETAG 226
Query: 273 IALLATLM 280
+ L+ +M
Sbjct: 227 MVSLSLMM 234
>gi|407792549|ref|ZP_11139586.1| 16S ribosomal RNA methyltransferase RsmE [Idiomarina xiamenensis
10-D-4]
gi|407217662|gb|EKE87494.1| 16S ribosomal RNA methyltransferase RsmE [Idiomarina xiamenensis
10-D-4]
Length = 255
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 109/251 (43%), Gaps = 33/251 (13%)
Query: 44 IPRFFSQ-----GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
IPR + G + + D H+ KVLRL + ++ LFNG G I + +
Sbjct: 14 IPRIYHATELPLGTPLPLSDDAVQHVVKVLRLGNDAQLRLFNGDGHDYHAKIVSLSKRQA 73
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQ 155
+VV E + P + + G +G R D++++K ELG +TPL TE + LQ
Sbjct: 74 EVVVTEVQQN--PSESPLKIHLGQGISRGERMDFVLQKSVELGVTDITPLFTERCGVKLQ 131
Query: 156 SRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNP-PM------KIDGLLPLVSQSK 208
++ L + I SA G+ + V P P+ DGL +
Sbjct: 132 GERL-----LKKQQQWQRIVISACEQCGRSVIPTVHTPQPLSQWLQDDFDGL-------R 179
Query: 209 LAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRV 268
L A+ L+++ + +++GPEG ++ E+ + A AV LGP LR
Sbjct: 180 LTLDPEADKPLRQQQLTNAAVQ----LLIGPEGGLSDAEIEQAATAQFQAVQLGPRVLRT 235
Query: 269 ETATIALLATL 279
ETA +A + L
Sbjct: 236 ETAALAAITCL 246
>gi|409401893|ref|ZP_11251532.1| 16S ribosomal RNA methyltransferase RsmE [Acidocella sp. MX-AZ02]
gi|409129431|gb|EKM99286.1| 16S ribosomal RNA methyltransferase RsmE [Acidocella sp. MX-AZ02]
Length = 235
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 103/235 (43%), Gaps = 17/235 (7%)
Query: 44 IPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVAL 103
+P G V + ++ V+RL D + +FNG+ G I +I R +
Sbjct: 10 VPDLPGAGEGFAVSDGQAHYLANVMRLGEGDTIRVFNGQAGEWRARIAKISRKAAILEPT 69
Query: 104 EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNG 163
+ ++ P+ W FA LK + D +VEK TELG + P++T +R D+
Sbjct: 70 QQTRVPAPEPDAWLCFA---LLKRQKTDLVVEKATELGVSVIQPIIT-----ARTNADHV 121
Query: 164 FLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTA 223
L IA A +RLH + P+ + L+ + + IA+
Sbjct: 122 NLE---RLRAIATEA-AEQCERLHVPEIRAPLPVMKLMAAWPAQR--PLCIADERRDAAL 175
Query: 224 LSSSRNESSGLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLRVETATIALLA 277
L + S+ ++VGPEG FT++E+ I T V LG LR ETA IA LA
Sbjct: 176 LGPASGPSA--LMVGPEGGFTDQELEAIARTPIITRVSLGSRILRAETAAIAGLA 228
>gi|372272861|ref|ZP_09508909.1| 16S ribosomal RNA methyltransferase RsmE [Marinobacterium stanieri
S30]
Length = 242
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 100/246 (40%), Gaps = 24/246 (9%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
IPR F S G + + H+ + LR++ DR+ +FNG+G E Q D +
Sbjct: 3 IPRVFEPQPLSAGARIELGDTSIQHVVRALRMNDGDRICIFNGEGQ--ECLAQLADVSKR 60
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
A+ + + + +G R D+ V+K TELG +TPL +E + +
Sbjct: 61 SAWAILEQPATPAVESPLQIHVGQTLSRGERMDYAVQKATELGVSKITPLTSE-RCEVKL 119
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPM-----KIDGLLPLVSQSKLAFVA 213
GD + ++ R+ + P+ ++D L LV A
Sbjct: 120 KGDREDKRLRHWQQVATSACEQSLRTRVPSIEEVSPLQTWIEQVDADLKLVLHHHTA--- 176
Query: 214 IAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
L S S +++GPEG TE EV+ + AG V GP +R ETA +
Sbjct: 177 --------QPLQSMDPPGSVALLIGPEGGLTEAEVDAALAAGFQPVAFGPRVMRTETAPV 228
Query: 274 ALLATL 279
A A L
Sbjct: 229 AACAIL 234
>gi|56476009|ref|YP_157598.1| 16S ribosomal RNA methyltransferase RsmE [Aromatoleum aromaticum
EbN1]
gi|56312052|emb|CAI06697.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
Length = 241
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 9/208 (4%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
H +VLRL D + LF+G+GG + R+ G D +A+ D L + + ++
Sbjct: 27 HALRVLRLRDGDPLVLFDGRGGELAA---RLQVRGRDALAVRDEYHALERESPLSLVLVQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G + DW+V+K ELG ++ PL E + G+ + ++ G
Sbjct: 84 ALASGEKMDWIVQKAVELGTSALVPLQAE-RCVLKLSGERAHKRVAHWRQVAISACEQSG 142
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
R+ E+ I GL ++ + + + S +R +++ ++VGPEG
Sbjct: 143 RNRVPEI-----EPITGLREYLASAAVGSRLVLTPVEGRRLASLARPDAALHLLVGPEGG 197
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVET 270
++++E+ AG VGLGP LR ET
Sbjct: 198 WSDEELAMCRAAGCVPVGLGPRVLRTET 225
>gi|241203235|ref|YP_002974331.1| 16S ribosomal RNA methyltransferase RsmE [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|240857125|gb|ACS54792.1| protein of unknown function DUF558 [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 245
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 104/221 (47%), Gaps = 12/221 (5%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
++G V D+F ++ VLR+ + LFNG+ G + + R + + A E+ +
Sbjct: 16 LTRGAGVEANADQFNYLANVLRMEDGGEILLFNGRDGEWKATLTFPTRKRILLTATEETR 75
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
PQ ++ F LK GR D+LV+K E+GA + P++T+ H+Q K+ + L
Sbjct: 76 ---PQPQPCDLHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQ-HVQG-KVTNLDKLRA 130
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSS 227
N A + G + E P +D L S+ ++ + +A + S+
Sbjct: 131 NVIEA--AEQCGILGIPDVAE----PVRLLDLLDRWPSERRIIYCDEGDAGQNPLPVLSA 184
Query: 228 RNESSGLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLR 267
E ++VGPEG F+E+E ++ TA+ LGP LR
Sbjct: 185 IRERHLALLVGPEGGFSEEERARLRSLDFVTAIPLGPRILR 225
>gi|407717412|ref|YP_006838692.1| ribosomal RNA small subunit methyltransferase E [Cycloclasticus sp.
P1]
gi|407257748|gb|AFT68189.1| Ribosomal RNA small subunit methyltransferase E [Cycloclasticus sp.
P1]
Length = 243
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 116/245 (47%), Gaps = 14/245 (5%)
Query: 40 SRGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTG-- 97
SR + + +G V +E D ++ VLRL ++ +FNG+GG + R
Sbjct: 4 SRLFVEQDLVEGAAVTLEADAAHYLRNVLRLKKGYQLTVFNGQGGEYSAIAVEVHRKAVV 63
Query: 98 LDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
L++ A +++L P + + + +G R D ++K TELG +TP++T+ +
Sbjct: 64 LELGAWRNVELESPLQIELGLSVS----RGERMDVAIQKATELGVAVITPVITQHCVV-- 117
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPL-VSQSKLAFVAIAE 216
K+ + L + ++ I A G R +LN M + L ++ S++ F E
Sbjct: 118 KLTEERRLQRHQHWQNIVYRACEQCG-RNKPPILNVTMDLAQWLNTELAASRIIF----E 172
Query: 217 ATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALL 276
T + + +++GPEG F+E+EV E +A+G GP +R ETA IA +
Sbjct: 173 PGKADTLRDYPKPNDAVAVLIGPEGGFSEQEVLDAQEVNFSALGFGPRVVRNETAAIASI 232
Query: 277 ATLML 281
A + +
Sbjct: 233 AGMQV 237
>gi|409405214|ref|ZP_11253676.1| hypothetical protein GWL_08280 [Herbaspirillum sp. GW103]
gi|386433763|gb|EIJ46588.1| hypothetical protein GWL_08280 [Herbaspirillum sp. GW103]
Length = 241
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 105/235 (44%), Gaps = 18/235 (7%)
Query: 44 IPRFFSQG----GIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
+PRF+ G V ++ H +VLRL D V LFNG+GG + I++
Sbjct: 1 MPRFYFPHPLGIGSALVLPEQIAHHIQVLRLQPGDTVTLFNGEGGEYTASLSAIEKK--- 57
Query: 100 VVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
A ++K P+ + + + A +G + DW+VEK ELGA ++ PL + + R
Sbjct: 58 -RAHAEVKTFSPREAELPYALTLAQALPEGSKMDWIVEKAVELGATALQPLAAQRCV-VR 115
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLA--FVAIA 215
G+ + G + +A G RL ++ ++ ++QS L +
Sbjct: 116 LSGERAEKKQAHWQGIVHAAAEQCGRNRLPQL-----GEVTDFKRWIAQSDLHRRILLSP 170
Query: 216 EATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
T ++ + + +IVGPEG F+E+E + GA + +G LR ET
Sbjct: 171 RGTEPLSGWARHHPPQAVTVIVGPEGGFSEEEEDLACAQGALMLSMGSRVLRTET 225
>gi|430742486|ref|YP_007201615.1| RsmE family RNA methyltransferase [Singulisphaera acidiphila DSM
18658]
gi|430014206|gb|AGA25920.1| RNA methyltransferase, RsmE family [Singulisphaera acidiphila DSM
18658]
Length = 241
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHT- 114
+EGDE H+ +V RL D+VELF+G+G C + + G D V L + L
Sbjct: 18 LEGDEARHLLRVRRLGLRDQVELFDGRG--YATCAE-VTAVGRDRVELTAVGTALADRPL 74
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
+ A KG R DWL+EK TELG + P++TE R + D +
Sbjct: 75 PCRLTLATAVPKGERFDWLIEKATELGVTRLVPIITE-----RSVVDPRDAKLERLRRRV 129
Query: 175 ANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGL 234
++ G RL E + P LL V + + +A +P S + + +
Sbjct: 130 VEASKQCGRNRLME--VERPTPWSTLLKSV-EDDVRLMAHPNGSPRGRWPRSRNGQGASV 186
Query: 235 II-VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA 271
+ VGPEG F++ EV++ +G + VGLGP LR+ETA
Sbjct: 187 TLAVGPEGGFSDVEVDEAQASGWSIVGLGPTILRIETA 224
>gi|256828472|ref|YP_003157200.1| hypothetical protein Dbac_0661 [Desulfomicrobium baculatum DSM
4028]
gi|256577648|gb|ACU88784.1| protein of unknown function DUF558 [Desulfomicrobium baculatum DSM
4028]
Length = 244
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 107/244 (43%), Gaps = 27/244 (11%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQ 115
+EG+EF H+T+VLR + V LF+G+G CI+ + + + L + P
Sbjct: 20 LEGEEFHHLTRVLRAKAGESVRLFDGRGRWGIFCIRDLSKKSASLQRLSEQTAPAPACP- 78
Query: 116 WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
+ A G KG R +L+EK ELGA V L +R G+ + + +
Sbjct: 79 --LILAVGWSKGLRRGFLLEKAVELGAAEVW-----LWQAARSQGEVPQEGKDGWERQLT 131
Query: 176 NSAFVYGGQRLHEM--------VLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSS 227
+A G RL ++ V++ + + + Q + FV P + A
Sbjct: 132 AAAKQCGASRLPQIRTFAGPADVISAAVDLGSKVLCWEQEENGFV-----DPTLLA---- 182
Query: 228 RNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSDSQQ 287
+ + ++GPEG KE + E G VGLGP+ LR ETA + L+ +L L + Q
Sbjct: 183 -HRRGSIAVLGPEGGLERKEADLFREHGFAPVGLGPNILRFETAAV-LVLSLHLWAAQQH 240
Query: 288 MPIP 291
P
Sbjct: 241 RQAP 244
>gi|423279809|ref|ZP_17258722.1| RsmE family RNA methyltransferase [Bacteroides fragilis HMW 610]
gi|404584797|gb|EKA89441.1| RsmE family RNA methyltransferase [Bacteroides fragilis HMW 610]
Length = 229
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 104/241 (43%), Gaps = 47/241 (19%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQW-- 116
+E H +VLRL+ D + L +GKG I + L ++K + Q W
Sbjct: 18 EEAQHCVRVLRLTAGDEITLTDGKGNFYRAEIS----AATNKRCLVNIKETIHQEPLWQG 73
Query: 117 NVFAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
++ A K R +WL EK TE+G +T FL+C F
Sbjct: 74 HLHIAMAPTKNMDRNEWLAEKATEIGFDELT-----------------FLNCRF------ 110
Query: 176 NSAFVYGGQRLHEMVLNP-PMKIDGLLPLVSQ------------SKLAFVAIAEA--TPL 220
+ V +R+ +++++ + LP +++ S F+A PL
Sbjct: 111 SERKVIKTERIEKILVSAIKQSLKARLPRLNEMTDFNSFIEKDFSGQKFIAHCYEGEKPL 170
Query: 221 VTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
+ + ++ L+++GPEGDF+E+EV K +E G + LG RLR ETA + T+
Sbjct: 171 LKDVLKKGEDT--LVLIGPEGDFSEEEVKKAIEKGFIPISLGKSRLRTETAALVACHTMN 228
Query: 281 L 281
+
Sbjct: 229 M 229
>gi|331698261|ref|YP_004334500.1| ribosomal RNA small subunit methyltransferase E [Pseudonocardia
dioxanivorans CB1190]
gi|326952950|gb|AEA26647.1| Ribosomal RNA small subunit methyltransferase E [Pseudonocardia
dioxanivorans CB1190]
Length = 248
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 97/225 (43%), Gaps = 8/225 (3%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQ 115
++G E H V RL + + L +G+GGL + + R LDV L+ +L P
Sbjct: 20 LDGPEGRHAATVRRLRPGEEITLADGRGGLARAVVDTVGRDRLDVRVLDRAELEPPTP-- 77
Query: 116 WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
V A +KG R + VE TE G ++ P + + G G + + +
Sbjct: 78 -RVTLAQALVKGERGELAVELATEAGVDAILPWRAARCVVRWEDGARGDRALARWRATVR 136
Query: 176 NSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP-LVTALSSSRNESSGL 234
++A +R + P+ L L A V AT L + LS + E L
Sbjct: 137 SAA--KQARRAWVPEVGAPVSTRELAALCPTFDRALVLHESATEGLASGLSGAPAEV--L 192
Query: 235 IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
++VGPEG ++E+ + AGA AV LGP LR TA L +
Sbjct: 193 LVVGPEGGVADEEIAMLTAAGARAVRLGPEVLRASTAAAVALGAI 237
>gi|237749444|ref|ZP_04579924.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
gi|229380806|gb|EEO30897.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
Length = 242
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 104/222 (46%), Gaps = 10/222 (4%)
Query: 66 KVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVAL--EDLKLVLPQHTQWNVFAAFG 123
+VLRL+ + + LFNG+GG I +DRT +V L D ++ LP +++ A
Sbjct: 27 QVLRLTEGNEIVLFNGEGGEYSARIISLDRTKTNVKILSRHDREVELP----YDITLAQA 82
Query: 124 TLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGG 183
+ G+ DW++EK ELGA + PL + + R D + + ++ G
Sbjct: 83 LPEAGKMDWIIEKAVELGAAGIQPLAAQRSV-VRLNADRAEKRLARWQTIVTAASEQCGR 141
Query: 184 QRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDF 243
L E ++ P+ + + S L + AT ++ + + + I++GPEG F
Sbjct: 142 NTLME--ISEPVAFNTFID-NSGGCLRVMFTPRATETLSGWARKQAPQAITIMIGPEGGF 198
Query: 244 TEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSDS 285
+ +E ++ G + +G LR ETA +A ++ + D+
Sbjct: 199 SPEEEELAIQNGVIPLSMGSRILRTETAGMAAISAINAIWDN 240
>gi|56698449|ref|YP_168823.1| 16S ribosomal RNA methyltransferase RsmE [Ruegeria pomeroyi DSS-3]
gi|56680186|gb|AAV96852.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3]
Length = 251
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 115/249 (46%), Gaps = 32/249 (12%)
Query: 44 IPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVA- 102
+ + QG V+V D+ ++ V+RL D V LFNG+ G + + + G +++
Sbjct: 9 VEQALGQGQPVQVSRDQAHYLFGVMRLGVGDWVALFNGRDGEWQARVGEAGKRGGELLCE 68
Query: 103 LEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDN 162
+ L +P +++ F +K R D++VEK E+GA + P+ TE R D
Sbjct: 69 SQSAPLRMPP----DLWLLFAPIKKARTDFIVEKAAEMGAARIVPVQTEFTNSERIRQDR 124
Query: 163 GFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLV----SQSKLAFV--AIAE 216
+A GG + E+ ++ L PL+ ++ +L F +A
Sbjct: 125 -------LQAHAVEAAEQCGGTYVPEVA-----ELQKLGPLLDRWPAERQLMFCDETLAG 172
Query: 217 ATPLVTALSSSRNESS--------GLIIVGPEGDFTEKEVNKIVE-AGATAVGLGPHRLR 267
+ ++ L + + E++ I++GPEG F+E+E ++ A AV LGP LR
Sbjct: 173 RSSALSGLLAGQGENARTGGPSGPWAILIGPEGGFSERERARLAALPNAHAVSLGPRILR 232
Query: 268 VETATIALL 276
+TA +A L
Sbjct: 233 ADTAAVAAL 241
>gi|392957222|ref|ZP_10322746.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus macauensis
ZFHKF-1]
gi|391876629|gb|EIT85225.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus macauensis
ZFHKF-1]
Length = 250
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 101/239 (42%), Gaps = 33/239 (13%)
Query: 58 GDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQW- 116
GD+ H+T+V+R++ D + +G G R R + +A E++ + QW
Sbjct: 20 GDDANHITRVMRMAEGDEILCCDGNG--------RTARCKIVSLAKEEVSATV---VQWL 68
Query: 117 --------NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCN 168
V A G KG + + +V+K TELGA + P + SR I
Sbjct: 69 TEEKELPIQVTIAQGLPKGDKLETIVQKGTELGAHAFLPFSS-----SRCIVKWDEKKGK 123
Query: 169 FYYGFIANSAFVYGGQRLHEMV--LNPPMKIDGLLPLVSQSKLAFVAIAEATP------L 220
+ A Q +++ + PP+ LL Q K VA E L
Sbjct: 124 KKVERLEKIAKEAAEQSHRQVIPTIEPPISFKQLLAKAKQFKYKMVAYEEEAKAGEKQQL 183
Query: 221 VTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
L++ L ++GPEG + +E +++ EAG GLGP LR ETA+ +LA L
Sbjct: 184 AQLLTTMDAAQEMLCVIGPEGGLSSEEASQLQEAGFLLCGLGPRILRTETASTYVLAAL 242
>gi|188994065|ref|YP_001928317.1| 16S ribosomal RNA methyltransferase RsmE [Porphyromonas gingivalis
ATCC 33277]
gi|188593745|dbj|BAG32720.1| conserved hypothetical protein with DUF558 domain [Porphyromonas
gingivalis ATCC 33277]
Length = 248
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 103/241 (42%), Gaps = 26/241 (10%)
Query: 55 RVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHT 114
R+ DE H+ +VLR+ DR+ L +G+G + I+ DR V P
Sbjct: 16 RLPDDEAGHILRVLRMQAGDRLRLTDGRGSFFDAVIETADRKSCYVSVCGQESWQKPWRD 75
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
+ + A T + R +W++EK E+G V + +E H + R+I I
Sbjct: 76 RITI-AIAPTKQSERMEWMLEKLVEIGVDEVVFIESE-HSERRRIKAERLER-------I 126
Query: 175 ANSAFVYGGQRLHEMV-LNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTA-LSSSRNESS 232
A SA + ++ +N P++ + K A IA V A ++ R S
Sbjct: 127 AISAMKQSLKASFPVIRVNIPIQT----VIADTPKAAVRLIAYVDEAVRAEITQGRGYPS 182
Query: 233 G--------LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA---LLATLML 281
LI++GPEGDF+ EV + AG V LG RLR ETA + + TL
Sbjct: 183 DFYHVGQDVLILIGPEGDFSPSEVESALLAGFAPVSLGESRLRTETAGLVACQWIHTLQA 242
Query: 282 C 282
C
Sbjct: 243 C 243
>gi|119503497|ref|ZP_01625580.1| hypothetical protein MGP2080_03120 [marine gamma proteobacterium
HTCC2080]
gi|119460559|gb|EAW41651.1| hypothetical protein MGP2080_03120 [marine gamma proteobacterium
HTCC2080]
Length = 243
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 104/237 (43%), Gaps = 20/237 (8%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTG--LDVVALED 105
G V +E + H+ KVLR D + LF G G + C+ + + L V +
Sbjct: 12 LESGNKVELEAEVAHHLVKVLRARVGDNITLFTGTGLDWQCCVSEVHKRSVTLSVGGASN 71
Query: 106 LKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDN 162
P T + + KG R DW ++K TE G ++TPL ++ + L + +I
Sbjct: 72 PNTESPLKTHLGLCLS----KGDRFDWAIQKATEAGVATITPLYSDRVDVKLPADRIPKR 127
Query: 163 GFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVT 222
++ I SA G+ + + +P + VS++KL F+ E +
Sbjct: 128 -----IAHWQQIVRSACEQCGRAIVPQIFDPTPLSNWAQEQVSEAKL-FLHHRE-----S 176
Query: 223 ALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
A+ +S ++VGPEG +E + +AG V LGP LR ETA + L+ L
Sbjct: 177 AMLPVTRPTSIALLVGPEGGLSETDRGYASDAGFIGVKLGPRVLRTETAPLVALSIL 233
>gi|262408613|ref|ZP_06085159.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294646252|ref|ZP_06723905.1| RNA methyltransferase, RsmE family [Bacteroides ovatus SD CC 2a]
gi|294808155|ref|ZP_06766923.1| RNA methyltransferase, RsmE family [Bacteroides xylanisolvens SD CC
1b]
gi|298481449|ref|ZP_06999641.1| RNA methyltransferase, RsmE family [Bacteroides sp. D22]
gi|336406964|ref|ZP_08587606.1| hypothetical protein HMPREF0127_04919 [Bacteroides sp. 1_1_30]
gi|345511330|ref|ZP_08790874.1| hypothetical protein BSAG_01815 [Bacteroides sp. D1]
gi|423212337|ref|ZP_17198866.1| RsmE family RNA methyltransferase [Bacteroides xylanisolvens
CL03T12C04]
gi|229444313|gb|EEO50104.1| hypothetical protein BSAG_01815 [Bacteroides sp. D1]
gi|262353478|gb|EEZ02572.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292638385|gb|EFF56750.1| RNA methyltransferase, RsmE family [Bacteroides ovatus SD CC 2a]
gi|294444662|gb|EFG13361.1| RNA methyltransferase, RsmE family [Bacteroides xylanisolvens SD CC
1b]
gi|295086912|emb|CBK68435.1| RNA methyltransferase, RsmE family [Bacteroides xylanisolvens XB1A]
gi|298272313|gb|EFI13882.1| RNA methyltransferase, RsmE family [Bacteroides sp. D22]
gi|335948439|gb|EGN10147.1| hypothetical protein HMPREF0127_04919 [Bacteroides sp. 1_1_30]
gi|392694783|gb|EIY88009.1| RsmE family RNA methyltransferase [Bacteroides xylanisolvens
CL03T12C04]
Length = 232
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 95/242 (39%), Gaps = 49/242 (20%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
+E H T+VLRL D + L +GKG + I + +K + Q W
Sbjct: 18 EEAQHCTRVLRLGIGDEITLTDGKGNFYKAEIT----VATNKRCFVTIKETIFQEPLWPC 73
Query: 119 ---FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
A T R +W EK TE+G +T FL+C F
Sbjct: 74 HLHIAMAPTKNMDRNEWFAEKATEIGFDELT-----------------FLNCRF------ 110
Query: 176 NSAFVYGGQRLHEMV--------------LNPPMKIDGLL--PLVSQSKLAFVAIAEATP 219
+ V +R+ +++ LN ++ D + Q +A E
Sbjct: 111 SERKVIKTERIEKILVSAIKQSLKARLPKLNEMIEFDPFIRQEFKGQKFIAHCYEGEKPL 170
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
L L + L+++GPEGDF+E+EV K +E G + LG RLR ETA + TL
Sbjct: 171 LKNVLKPGED---ALVLIGPEGDFSEEEVKKAIEQGFVPISLGKSRLRTETAALVACHTL 227
Query: 280 ML 281
L
Sbjct: 228 NL 229
>gi|334147060|ref|YP_004509989.1| 16S ribosomal RNA methyltransferase RsmE [Porphyromonas gingivalis
TDC60]
gi|333804216|dbj|BAK25423.1| 16S ribosomal RNA methyltransferase RsmE [Porphyromonas gingivalis
TDC60]
Length = 248
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 103/241 (42%), Gaps = 26/241 (10%)
Query: 55 RVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHT 114
R+ DE H+ +VLR+ DR+ L +G+G + I+ DR V P
Sbjct: 16 RLPDDEAGHILRVLRMQAGDRLRLTDGRGSFFDAVIETADRKSCYVSVCGQESWQKPWRD 75
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
+ + A T + R +W++EK E+G V + +E H + R+I I
Sbjct: 76 RITI-AIAPTKQSERMEWMLEKLVEIGVDEVVFIESE-HSERRRIKAERLER-------I 126
Query: 175 ANSAFVYGGQRLHEMV-LNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTA-LSSSRNESS 232
A SA + ++ +N P++ + K A IA V A ++ R S
Sbjct: 127 AISAMKQSLKASFPVIRVNIPIQT----VMADTPKTAVRLIAYVDEAVRAEITQGRGYPS 182
Query: 233 G--------LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA---LLATLML 281
LI++GPEGDF+ EV + AG V LG RLR ETA + + TL
Sbjct: 183 DFYHVGQDVLILIGPEGDFSPSEVESALLAGFAPVSLGESRLRTETAGLVACQWIHTLQA 242
Query: 282 C 282
C
Sbjct: 243 C 243
>gi|160895341|ref|ZP_02076112.1| hypothetical protein CLOL250_02900 [Clostridium sp. L2-50]
gi|156863034|gb|EDO56465.1| RNA methyltransferase, RsmE family [Clostridium sp. L2-50]
Length = 248
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 109/242 (45%), Gaps = 16/242 (6%)
Query: 46 RFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALED 105
R F + + + G++ H+ VLRL ND + + +G+G I +D + L+
Sbjct: 11 RVFDKS--IDITGEDVNHIKNVLRLKVNDEIIISDGRGRDYRCQISVMDHEKVVADILDV 68
Query: 106 LKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDN 162
T+ +F F K + +W+++K ELG + P++T+ + L ++K G
Sbjct: 69 CDNFAELETEITLFQGFP--KADKMEWIIQKTVELGVTRIVPVMTKRTVVKLDAKKAGKK 126
Query: 163 GFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVT 222
Y IA +A G+ + V P+ L + + + + EA +
Sbjct: 127 -----TERYQAIALAAAKQSGRGVIPEV-TAPVTWKEALAMAKELDMNMIPYEEAEGVAY 180
Query: 223 A---LSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
+ +S + + S I +GPEG F +EV + GA V LG LR ETA +A+++ +
Sbjct: 181 SKEVFASIKGKKSLGIFIGPEGGFAGEEVVAATDMGAKMVTLGHRILRTETAGMAVMSII 240
Query: 280 ML 281
M
Sbjct: 241 MF 242
>gi|402833451|ref|ZP_10882068.1| RNA methyltransferase, RsmE family [Selenomonas sp. CM52]
gi|402280490|gb|EJU29197.1| RNA methyltransferase, RsmE family [Selenomonas sp. CM52]
Length = 261
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 107/239 (44%), Gaps = 9/239 (3%)
Query: 44 IPRFFSQGGI---VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV 100
+ R F +G I + V G + H+ +V+R +++ + +G GG E + + +
Sbjct: 1 MRRVFLEGEIADTMEVRGADAHHLQRVMRAKLGEKLLVADGAGGSAEAEVAGFADGRVQL 60
Query: 101 VALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIG 160
+ L + +F KG R D++V+K TELG + P+L++ ++ R
Sbjct: 61 RLVRRLSEAAESQAEIELFQCLP--KGDRMDFIVQKATELGVACIRPVLSQ-NVVVRYDE 117
Query: 161 DNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMK--IDGLLPLVSQSKLAFVAIAEAT 218
+ A +A G R+ E++ P++ ++G +L F + E
Sbjct: 118 KKARARVERWQKIAAEAAKQCGRTRIPEVMPIVPLRAAMEGQGAAEYALRLFFYEMEERR 177
Query: 219 PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
L T LS S ++VGPEG F E E V G +AV LG LRV+TA I LA
Sbjct: 178 ELRTVLSDSEARRI-FMLVGPEGGFDEAEAQLAVAHGFSAVTLGRRILRVDTAAIVALA 235
>gi|313145535|ref|ZP_07807728.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|424662125|ref|ZP_18099162.1| RsmE family RNA methyltransferase [Bacteroides fragilis HMW 616]
gi|313134302|gb|EFR51662.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|404577914|gb|EKA82650.1| RsmE family RNA methyltransferase [Bacteroides fragilis HMW 616]
Length = 229
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 104/241 (43%), Gaps = 47/241 (19%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQW-- 116
+E H +VLRL+ D + L +GKG I + L ++K + Q W
Sbjct: 18 EEAQHCVRVLRLTAGDEITLTDGKGNFYRAEIS----AATNKRCLVNIKETIHQEPLWEG 73
Query: 117 NVFAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
++ A K R +WL EK TE+G +T FL+C F
Sbjct: 74 HLHIAMAPTKNMDRNEWLAEKATEIGFDELT-----------------FLNCRF------ 110
Query: 176 NSAFVYGGQRLHEMVLNP-PMKIDGLLPLVSQ------------SKLAFVAIAEA--TPL 220
+ V +R+ +++++ + LP +++ S F+A PL
Sbjct: 111 SERKVIKTERIEKILVSAIKQSLKARLPRLNEMTDFNSFIEKDFSGQKFIAHCYEGEKPL 170
Query: 221 VTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
+ + ++ L+++GPEGDF+E+EV K +E G + LG RLR ETA + T+
Sbjct: 171 LKDVLKKGEDT--LVLIGPEGDFSEEEVKKAIEKGFIPISLGKSRLRTETAALVACHTMN 228
Query: 281 L 281
+
Sbjct: 229 M 229
>gi|256426185|ref|YP_003126838.1| hypothetical protein Cpin_7237 [Chitinophaga pinensis DSM 2588]
gi|256041093|gb|ACU64637.1| protein of unknown function DUF558 [Chitinophaga pinensis DSM 2588]
Length = 234
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 97/209 (46%), Gaps = 16/209 (7%)
Query: 67 VLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAFGTLK 126
VLR + V L +G+GG I +R +V + +L+ P + + +F T
Sbjct: 27 VLRHEKGNEVLLTDGRGGRYTTTITDDNRKKC-IVTVNQYELMPPVASPVRIAISF-TKN 84
Query: 127 GGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRL 186
R +W +EK E+G Q + PL+++ + + D + I SA + Q+
Sbjct: 85 SSRIEWFLEKAAEIGMQMIIPLVSQRTEKEKFRADR--------FENILVSAML-QSQQY 135
Query: 187 HEMVLNPPMKIDGLL--PLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFT 244
+ L P D L+ P Q +A + T L A+ ++ L+++GPEGDFT
Sbjct: 136 YLPELTAPASFDTLVQQPPAQQLFIAHCLPEQKTHLWQAMQPGKD---SLLLIGPEGDFT 192
Query: 245 EKEVNKIVEAGATAVGLGPHRLRVETATI 273
+E++ + G V LG +RLR ETA +
Sbjct: 193 PEEIHLALNKGFQPVSLGDNRLRTETAGV 221
>gi|340622484|ref|YP_004740936.1| 16S rRNA m3U1498 methyltransferase [Capnocytophaga canimorsus Cc5]
gi|339902750|gb|AEK23829.1| 16S rRNA m3U1498 methyltransferase [Capnocytophaga canimorsus Cc5]
Length = 239
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 100/233 (42%), Gaps = 21/233 (9%)
Query: 57 EGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQ--RIDRTGLDVVALEDLKLVLPQHT 114
E +E H+ KVLR D + + NGKG EG I R + + ++K P H
Sbjct: 19 EKEESQHIVKVLRKKEGDLLHITNGKGMRFEGQISFASAKRCEVLITNFTEIK-KHPYHL 77
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
V T R +W +EK E+G +TP++ + + + + I + F I
Sbjct: 78 HLVVAP---TKMNERYEWFLEKAVEIGVDEITPIICQ-NSERKTIKNERFEK-------I 126
Query: 175 ANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSK----LAFVAIAEATPLVTALSSSRNE 230
SA Q H +L+P + + K +A E L + + S
Sbjct: 127 ILSAMKQSLQ-YHLPILHPTISSSDFFEQMKNEKGSKFIAHCQENEKKALASEIQSVPER 185
Query: 231 SSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCS 283
+ I++GPEGDF+ E+ K + T + LG +RLR ETA I T+ + S
Sbjct: 186 LT--ILIGPEGDFSAFEIQKALSENFTPISLGNNRLRTETAAIVACHTVSVMS 236
>gi|416189186|ref|ZP_11615148.1| hypothetical protein TIGR00046 [Neisseria meningitidis M0579]
gi|325135519|gb|EGC58137.1| hypothetical protein TIGR00046 [Neisseria meningitidis M0579]
Length = 241
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 114/248 (45%), Gaps = 26/248 (10%)
Query: 41 RGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRID--RTGL 98
R +P S G V + + H+ VLR+ N+ + LFNGKG + ++ R G
Sbjct: 3 RFHLPENLSVGQTVALPDNIVRHLN-VLRVRPNENITLFNGKGKAHAARLTVLEKRRAGA 61
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
+++ E P N+ G R D+ ++K ELG ++ P+++E + R
Sbjct: 62 EILHEETADAESP----LNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCI-VRL 116
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT 218
G+ + + ++ G + PP +LP++ + +E+T
Sbjct: 117 DGERAAKRLARWQEIVISACEQSGRNTV------PP-----VLPIIGYREALDKMPSEST 165
Query: 219 PLVTALSSSRN-----ESSGLII--VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA 271
L+ +++ +R + SG I+ VGPEG +TE+E + EAG AV LG LR ETA
Sbjct: 166 KLIMSINRARKLGDIRQPSGAIVFMVGPEGGWTEQEEQQAFEAGFQAVTLGKRILRTETA 225
Query: 272 TIALLATL 279
+A LA +
Sbjct: 226 PLAALAAM 233
>gi|221213199|ref|ZP_03586174.1| conserved hypothetical protein TIGR00046 [Burkholderia multivorans
CGD1]
gi|221166651|gb|EED99122.1| conserved hypothetical protein TIGR00046 [Burkholderia multivorans
CGD1]
Length = 255
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 101/248 (40%), Gaps = 35/248 (14%)
Query: 42 GGIPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRT 96
+PRFF + + + D H +VLRL D + LF+G GG + ID+
Sbjct: 8 AAVPRFFVDTALRADATLALPADVARH-AQVLRLQPGDPLALFDGTGGQYRARLVEIDKR 66
Query: 97 GLDVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHL 154
AL + P + + V A G G + DW++EK ELG +V PL T +
Sbjct: 67 S----ALAQIDAFDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGV 122
Query: 155 QSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLN----------PPMKIDGLLPLV 204
+ G+ + G + S G R+ ++ PP DG L L+
Sbjct: 123 -VKLSGERAEKRVAHWRGVVRASCEQCGRNRVPDVAAVRAFAAWLDSLPPAPADGELRLL 181
Query: 205 --SQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLG 262
++ + F ++ +A P +++GPEG + E G TA+ LG
Sbjct: 182 LSPRASIPFASLPDAPPAAPVT----------LLIGPEGGLSPDEEAAARARGFTALSLG 231
Query: 263 PHRLRVET 270
P LR ET
Sbjct: 232 PRVLRTET 239
>gi|375256630|ref|YP_005015797.1| RsmE family RNA methyltransferase [Tannerella forsythia ATCC 43037]
gi|363407752|gb|AEW21438.1| RNA methyltransferase, RsmE family [Tannerella forsythia ATCC
43037]
Length = 232
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 93/242 (38%), Gaps = 53/242 (21%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
+E H TKVLRL+ +D + L +GKG I V +E L PQ W
Sbjct: 18 EESRHCTKVLRLTVDDTLMLTDGKGAFYRAVIAEPHPKYCRVTVVEHL----PQAPLWPF 73
Query: 119 ---FAAFGTLKGGRADWLVEKCTELGAQSVTPL------------------LTELHLQSR 157
A T R +W +EK TE+G +VT L L QS+
Sbjct: 74 RIHLAVAPTKNIDRMEWFLEKATEVGIDTVTCLNCRFSERREVKTERLEKILVSAMKQSQ 133
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA 217
K + + + F+A + G+++ P LPL+
Sbjct: 134 KARLPQLIGMSDFSDFVARP---FEGRKIIAHCHTPD------LPLIR------------ 172
Query: 218 TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
S R LI++GPEGDF+++EV G T V LG RLR ETA
Sbjct: 173 -------SVYRPGEDALILIGPEGDFSKEEVELAEAHGFTGVSLGKSRLRTETAAFTACH 225
Query: 278 TL 279
TL
Sbjct: 226 TL 227
>gi|331270009|ref|YP_004396501.1| hypothetical protein CbC4_1830 [Clostridium botulinum BKT015925]
gi|329126559|gb|AEB76504.1| conserved hypothetical protein TIGR00046 [Clostridium botulinum
BKT015925]
Length = 251
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 113/246 (45%), Gaps = 25/246 (10%)
Query: 46 RFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALED 105
+ FS ++ EG++ H+ KVLRL ++V + N G G I ID+T ++V +E+
Sbjct: 10 KIFSDLAVI--EGEDVKHIYKVLRLKEGEKVNINNCNGKEFLGIIDYIDKTKVEVKLVEE 67
Query: 106 LKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLT--------ELHLQSR 157
LK + V+ G K + D + +KCTELG + +TP++T ++ +S+
Sbjct: 68 LK--VNNEPPIEVYLFQGLPKSTKMDLITQKCTELGIKEITPIVTSRVSSSINDIKRESK 125
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI--A 215
KI + IA A + L +V N DG + L V A
Sbjct: 126 KID---------RWNRIAFEACKQNKRTLIPIV-NDITDFDGFTAKLKDMDLIVVPYENA 175
Query: 216 EATPLVTALSSSRNESSGL-IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274
E + + E + I++GPEG F E+E+ + GA V LGP LR ETA
Sbjct: 176 ENYGIKQMTKGLKGEVKKIAIVIGPEGGFEEEEITSLKNKGAHIVTLGPRILRTETAGFT 235
Query: 275 LLATLM 280
LA LM
Sbjct: 236 CLALLM 241
>gi|119470540|ref|ZP_01613243.1| hypothetical protein ATW7_12016 [Alteromonadales bacterium TW-7]
gi|119446241|gb|EAW27518.1| hypothetical protein ATW7_12016 [Alteromonadales bacterium TW-7]
Length = 244
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 116/253 (45%), Gaps = 33/253 (13%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+P + I V ++ D H+ +VLR+ + V +FNG+GG E + I+ +
Sbjct: 3 VPHIYQASSITLNTPVSLDDDAAGHIGRVLRMKVGEHVSIFNGEGG--EYLSEIIEVSKK 60
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLK---------GGRADWLVEKCTELGAQSVTPLL 149
+VV V+PQ Q+N LK G + D+ ++K ELG +TP+
Sbjct: 61 NVV-------VMPQ--QFNPHDVESPLKIHLGQCVSRGDKMDFTIQKSVELGITEITPIF 111
Query: 150 TELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS-K 208
++ + IGD + + IA +A G R + V++PP+ I L + + K
Sbjct: 112 SQ-RCGVKLIGDR-LDKKHQQWQKIAIAAAEQSG-RNYVPVVHPPIDIKQWLEQSTNAIK 168
Query: 209 LAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRV 268
L AE + + E +VGPEG FT++E+ + + + LGP LR
Sbjct: 169 LTLHPRAEHSIKTITVP----EDGVRFLVGPEGGFTDEEMAQTKQQEFVDIRLGPRVLRT 224
Query: 269 ETATIALLATLML 281
ETA + +L+ L L
Sbjct: 225 ETAALTVLSALQL 237
>gi|94496115|ref|ZP_01302693.1| hypothetical protein SKA58_03355 [Sphingomonas sp. SKA58]
gi|94424294|gb|EAT09317.1| hypothetical protein SKA58_03355 [Sphingomonas sp. SKA58]
Length = 248
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 106/235 (45%), Gaps = 16/235 (6%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
G V V+G+ ++ V+R+ +D V LF+G+ G E + D D+V +
Sbjct: 21 LGDGVAVPVDGNPAHYLISVMRVKPDDIVLLFDGRSG--EWAARARDIRKRDLVLECVAQ 78
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
P+ + + ++ GR D + EK ELG + P+LT R + D L+
Sbjct: 79 TRAPEQVP-DYWLCCAPIRKGRIDLIAEKACELGVAKLQPVLTR-----RAVVDK--LNL 130
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLL-PLVSQSKLAFVAIAEATPLVTALSS 226
+ + + +A G L + L MK+D LL S+ L F + PL L +
Sbjct: 131 DRLHAHLVEAAEQCGRTALPD--LGSLMKLDALLGNWDSRRHLFFADESGGAPLEQTLRA 188
Query: 227 SRNESSGLIIVGPEGDFTEKEVNKI-VEAGATAVGLGPHRLRVETATIALLATLM 280
++ +VGPEG F +E + I GA AV LGP LR ETA IA + M
Sbjct: 189 HPGPAA--FLVGPEGGFDPQERDAIQAMPGAVAVSLGPRILRAETAAIAATSAWM 241
>gi|71280059|ref|YP_267997.1| 16S ribosomal RNA methyltransferase RsmE [Colwellia psychrerythraea
34H]
gi|71145799|gb|AAZ26272.1| conserved hypothetical protein TIGR00046 [Colwellia psychrerythraea
34H]
Length = 244
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 107/246 (43%), Gaps = 24/246 (9%)
Query: 45 PRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGL-IEGCIQRIDRTGL 98
PR F Q V + D F H+ +VLRL D + LFNG+ + + +
Sbjct: 4 PRIFQQSQFALNETVPLSDDAFGHVVRVLRLKEGDTITLFNGEEAFQYTATLCNVSKKSA 63
Query: 99 DV--VALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LH 153
DV + E+ P N+ G +G R D+ ++K ELG ++TPL TE +
Sbjct: 64 DVKVTSQEENNSESP----LNIHLGQGISRGDRMDFTLQKSVELGVNTITPLFTERCGVK 119
Query: 154 LQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVA 213
L + ++ + I SA G+ +V P + D L S K+
Sbjct: 120 LNAERLEKK-----RQQWQKIVISACEQSGRASVPIVAEPMLLADWLKQETSALKINLHP 174
Query: 214 IAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
A+ + + + ++R +++GPEG +++E+ + ++ V LGP LR ETA +
Sbjct: 175 KAQHSIMSLPMENTRVR----LLIGPEGGLSDEEITQANDSDFHDVLLGPRVLRTETAAL 230
Query: 274 ALLATL 279
+ L
Sbjct: 231 TAITAL 236
>gi|339481960|ref|YP_004693746.1| Ribosomal RNA small subunit methyltransferase E [Nitrosomonas sp.
Is79A3]
gi|338804105|gb|AEJ00347.1| Ribosomal RNA small subunit methyltransferase E [Nitrosomonas sp.
Is79A3]
Length = 248
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 103/242 (42%), Gaps = 15/242 (6%)
Query: 45 PRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVV--A 102
P + G ++ + + H +VLRL D + LFNG GG I+ I ++ V+ A
Sbjct: 8 PAEIAIGQLIELSVENKHHAARVLRLKEGDAITLFNGHGGEFSAFIENISKSNTTVLIDA 67
Query: 103 LEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKI 159
+D+ P N+ A + DW+++K ELG + P+ T +HL +
Sbjct: 68 YQDMDCESP----LNITLAQAICVNEKMDWIIQKAAELGVTCIQPVSTVRSIVHLSDERS 123
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMV--LNPPMKIDGLLPLVSQSKLAFVAIAEA 217
+ I ++ G L +++ ++ P + + S L F+ A
Sbjct: 124 SKR----LQHWQKIIISACEQCGRNHLPQILPLISLPEWLSQKKTMRSSHDLNFMLSTTA 179
Query: 218 TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
+ + + +++GPEG FT++E I G V LG LR E+A +A ++
Sbjct: 180 VESLRNMPQPSASAHIALVIGPEGGFTQEEEIAISHTGFIPVRLGKRILRTESAALAAIS 239
Query: 278 TL 279
+
Sbjct: 240 AM 241
>gi|404370255|ref|ZP_10975578.1| RsmE family RNA methyltransferase [Clostridium sp. 7_2_43FAA]
gi|226913623|gb|EEH98824.1| RsmE family RNA methyltransferase [Clostridium sp. 7_2_43FAA]
Length = 250
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 19/226 (8%)
Query: 55 RVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHT 114
++ GD+ H+ KVLRL+ D++ L N G I I + + +V +E+ KL + +
Sbjct: 17 KILGDDVKHLYKVLRLNEGDKIVLNNCDGEEFLASISTITKQEV-IVEIEE-KLQINNES 74
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
++ G K + D +V+K TELG P LT+ + + GD L +
Sbjct: 75 SVKIYLFQGLPKAQKMDLIVQKGTELGITEFIPTLTD-RVDIKLKGDFKKLDR------L 127
Query: 175 ANSAFVYGGQRLHEMVLN--PPMKIDGLLPLVSQSKLAFVAIAEATPL-------VTALS 225
A Q ++ N P+ D L ++ + V A T L
Sbjct: 128 NRIALEAAKQSKRSIIPNVVDPISFDEALDKMNNLDMVIVPYENAENFGIKTLFNHTDLD 187
Query: 226 SSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA 271
++ ++ G I+VGPEG F E E+N++ E GA V LG LR ETA
Sbjct: 188 RTKIKTVG-ILVGPEGGFEEDEINRLKENGAYIVTLGSRILRTETA 232
>gi|265762508|ref|ZP_06091076.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|263255116|gb|EEZ26462.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
Length = 229
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 101/246 (41%), Gaps = 57/246 (23%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVA----LEDLKLVLPQHT 114
+E H +VLRL+ D + L +GKG R + V A L ++K + Q
Sbjct: 18 EEAQHCVRVLRLTAGDEISLTDGKGNFY--------RAEISVAAHKRCLVNIKETIYQEP 69
Query: 115 QWN---VFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYY 171
W+ A T R +W EK TE+G +T FL+C F
Sbjct: 70 LWDGHLHIAMAPTKNMDRNEWFAEKATEIGFDELT-----------------FLNCRF-- 110
Query: 172 GFIANSAFVYGGQRLHEMVLNP-PMKIDGLLPLVS---------------QSKLAFVAIA 215
+ V +R+ +++++ + LP ++ Q +A
Sbjct: 111 ----SERKVIKTERIEKILVSAIKQSLKARLPRLNEMTDFCTFIEKDFKGQKFIAHCYEG 166
Query: 216 EATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIAL 275
E L L+ + L+++GPEGDF+E+EV K +E G + LG RLR ETA +
Sbjct: 167 EKPLLKDVLTKGED---ALVLIGPEGDFSEEEVKKAIEKGFVPISLGKSRLRTETAALVA 223
Query: 276 LATLML 281
T+ +
Sbjct: 224 CHTMNM 229
>gi|424880174|ref|ZP_18303806.1| RNA methyltransferase, RsmE family [Rhizobium leguminosarum bv.
trifolii WU95]
gi|392516537|gb|EIW41269.1| RNA methyltransferase, RsmE family [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 245
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 106/223 (47%), Gaps = 16/223 (7%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
S G + D+F ++ VLR+ + LFNG+ G + + R + + A E+ +
Sbjct: 16 LSSGAALEANADQFNYLANVLRMEDGGEILLFNGRDGEWKATLTFPTRKRILLRASEETR 75
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
PQ ++ F LK GR D+LV+K E+GA + P++T+ H+Q KI + L
Sbjct: 76 ---PQPQPCDLHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQ-HVQG-KITNVDKLRA 130
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA--TPLVTALS 225
N A + G + E P +D L S+ ++ + +A PL LS
Sbjct: 131 NVVEA--AEQCGILGIPDVAE----PVRLLDLLDRWPSERRIIYCDEGDAGQNPL-PVLS 183
Query: 226 SSRNESSGLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLR 267
+ R+ L +VGPEG F+E+E ++ TA+ LGP LR
Sbjct: 184 AIRDRHLAL-LVGPEGGFSEEERARLRSLDFVTAIPLGPRILR 225
>gi|53712317|ref|YP_098309.1| 16S ribosomal RNA methyltransferase RsmE [Bacteroides fragilis
YCH46]
gi|52215182|dbj|BAD47775.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
Length = 229
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 98/242 (40%), Gaps = 49/242 (20%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWN- 117
+E H +VLRL+ D + L +GKG I L ++K + Q W+
Sbjct: 18 EEAQHCVRVLRLTAGDEISLTDGKGNFYRAEIS----VATHKRCLVNIKETIYQEPLWDG 73
Query: 118 --VFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
A T R +W EK TE+G +T FL+C F
Sbjct: 74 HLHIAMAPTKNMDRNEWFAEKATEIGFDELT-----------------FLNCRF------ 110
Query: 176 NSAFVYGGQRLHEMVLNP-PMKIDGLLPLVS---------------QSKLAFVAIAEATP 219
+ V +R+ +++++ + LP ++ Q +A E
Sbjct: 111 SERKVIKTERIEKILVSAIKQSLKARLPRLNEMTDFYTFIEKDFKGQKFIAHCYEGEKPL 170
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
L L+ + L+++GPEGDF+E+EV K +E G + LG RLR ETA + T+
Sbjct: 171 LKDVLTKGED---ALVLIGPEGDFSEEEVKKAIEKGFVPISLGKSRLRTETAALVACHTM 227
Query: 280 ML 281
+
Sbjct: 228 NM 229
>gi|392531688|ref|ZP_10278825.1| ribosomal RNA small subunit methyltransferase E [Carnobacterium
maltaromaticum ATCC 35586]
gi|414083947|ref|YP_006992655.1| ribosomal RNA small subunit methyltransferase E [Carnobacterium
maltaromaticum LMA28]
gi|412997531|emb|CCO11340.1| ribosomal RNA small subunit methyltransferase E [Carnobacterium
maltaromaticum LMA28]
Length = 254
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 29/245 (11%)
Query: 50 QGGIVRVEGDEFWHMTKVLRLSTNDRVELF--NGKGGLIEGCIQRIDRTGLDVVALEDLK 107
Q ++ +EGD++ HM +V+R+ D+V L N + + E IQ I+ L DLK
Sbjct: 14 QNQLISIEGDQYHHMVRVMRMKVEDKVFLVLPNSQAFIAE--IQTIENDYL------DLK 65
Query: 108 LVLPQHTQW----NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS------- 156
+ +H V G KG + + +V+K TELGA P + +
Sbjct: 66 WIADEHQNKELPVEVTIVSGLPKGDKLELIVQKGTELGASHFIPFAAKFSITKWDEKKGL 125
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEM--VLNPPMKIDGLLPLVSQSKLAFVAI 214
+KI A V + +H + ++ D LL +S +
Sbjct: 126 KKI--QRLEKIALEAAEQAQRHVVPTIEAVHSLSQLIETSQGYDRLLVAYEES----AKV 179
Query: 215 AEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274
E L + L++ GPEG +EKE++ + +AG LGP LR ETA +
Sbjct: 180 GEDQNFAKVLKNLETGEKVLVVFGPEGGLSEKEISSLTDAGFICCALGPRILRTETAPLY 239
Query: 275 LLATL 279
+L+ L
Sbjct: 240 VLSAL 244
>gi|330813642|ref|YP_004357881.1| ribosomal RNA small subunit methyltransferase E [Candidatus
Pelagibacter sp. IMCC9063]
gi|327486737|gb|AEA81142.1| ribosomal RNA small subunit methyltransferase E [Candidatus
Pelagibacter sp. IMCC9063]
Length = 238
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 109/225 (48%), Gaps = 19/225 (8%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCI--QRIDRTGLDVVALEDLKLVLPQHTQW 116
D+ +++ V+RL + D + LFNG G G + +T + V A + Q
Sbjct: 24 DQSHYISNVMRLKSGDELLLFNGIDGEFLGKVAGSEKKQTIIQVHAKQR-----DQSKPS 78
Query: 117 NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIAN 176
N+ AF LKG R D+L++KCTE+G +S P++++ H R + +N I
Sbjct: 79 NISLAFCPLKGQRLDFLIQKCTEVGLKSFIPVISD-HTIVRNVNENRL------KKIIIE 131
Query: 177 SAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLA-FVAIAEATPLVTALSSSRNESSGLI 235
S+ +LH + + ++ L + + + F I+ +T L ++++ ++
Sbjct: 132 SS--EQSDQLHIPQVLSALNLEEFLHFLKKEDVVLFGDISSKNNDLTQLIEDKSKNY-IL 188
Query: 236 IVGPEGDFTEKEVNKIVE-AGATAVGLGPHRLRVETATIALLATL 279
+GPEGDF+ KE I++ + LG + LR ETA IA L L
Sbjct: 189 FIGPEGDFSPKEREIILKNVKFKSFSLGKNILRSETAAIAGLVLL 233
>gi|407452863|ref|YP_006724588.1| hypothetical protein B739_2106 [Riemerella anatipestifer RA-CH-1]
gi|403313847|gb|AFR36688.1| hypothetical protein B739_2106 [Riemerella anatipestifer RA-CH-1]
Length = 231
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 103/229 (44%), Gaps = 22/229 (9%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEG-CIQRIDRTGLDVVALEDLKLVLPQ 112
V ++ DE H++KVLR+ + + + +GKG + +G + + LD++ ++ K P
Sbjct: 13 VIIDSDEQHHISKVLRMKEGEILYVTDGKGNVAKGNLVLEGKKVELDILEIQTKK---PP 69
Query: 113 HTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTEL----HLQSRKIGDNGFLSCN 168
+ + A T R ++ VEK TE+G ++ LLTE HL KI
Sbjct: 70 FSPYLHIAIAPTKNIDRIEFFVEKATEMGISEISFLLTEKSERKHLNIDKIQKK------ 123
Query: 169 FYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSR 228
IA S R H +N K + ++ FVA + +LS
Sbjct: 124 ----VIAASK---QSLRYHFPKVNDLQKFTSFMQ-TQTAENTFVAHCDKAFKRVSLSEIP 175
Query: 229 NESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
++GPEGDF+ E+ ++E G A+ LG RLR ETA + + A
Sbjct: 176 LVDKVCFLIGPEGDFSPSEIELLLEKGVQAISLGNQRLRTETAGVFVAA 224
>gi|379732245|ref|YP_005324441.1| 16S ribosomal RNA methyltransferase RsmE [Saprospira grandis str.
Lewin]
gi|378577856|gb|AFC26857.1| 16S ribosomal RNA methyltransferase RsmE [Saprospira grandis str.
Lewin]
Length = 238
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 104/233 (44%), Gaps = 25/233 (10%)
Query: 50 QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLV 109
QG +E DEF H K LR D++ LF+G+G I + + + L+ +
Sbjct: 10 QGQQAILEEDEFRHACKTLRKKEGDQLHLFDGRGHYYLAQIAKTSKREARLDILDQEERP 69
Query: 110 LPQHTQWNV---FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLS 166
LP W+ A T R +WLVEK E+G ++ L++ + +K+ +
Sbjct: 70 LP----WSFSLHLALAPTKNMDRMEWLVEKAVEVGVNKISLFLSQ-QSERKKVRLDRLQR 124
Query: 167 CNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLA--FVAIAEAT--PLVT 222
IA SA ++ H+ VL ++ L + Q F+A ++ PL+
Sbjct: 125 -------IALSA----AKQSHKWVLPEWGELQKLTDFLPQQTAPHRFIAHCHSSDLPLLK 173
Query: 223 ALSSSR--NESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
A + LI++GPEGDF+ EV AG +V LG RLR ETA +
Sbjct: 174 AACPKTIGPKEEILILLGPEGDFSWPEVEMAEAAGFRSVSLGHSRLRTETAAL 226
>gi|34541729|ref|NP_906208.1| 16S ribosomal RNA methyltransferase RsmE [Porphyromonas gingivalis
W83]
gi|419970720|ref|ZP_14486202.1| RNA methyltransferase, RsmE family [Porphyromonas gingivalis W50]
gi|34398047|gb|AAQ67107.1| conserved hypothetical protein TIGR00046 [Porphyromonas gingivalis
W83]
gi|392610183|gb|EIW92967.1| RNA methyltransferase, RsmE family [Porphyromonas gingivalis W50]
Length = 248
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 104/246 (42%), Gaps = 36/246 (14%)
Query: 55 RVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTG--LDVVALEDLKLVLPQ 112
R+ DE H+ +VLR+ DR+ L +G+G + I+ DR + V E P
Sbjct: 16 RLPDDEAGHILRVLRMQAGDRLRLTDGRGSFFDAVIETADRKSCYVSVCGQE------PW 69
Query: 113 HTQWN---VFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNF 169
W A T + R +W++EK E+G V + +E H + R+I
Sbjct: 70 QKPWRDRITIAIAPTKQSERMEWMLEKLVEIGVDEVVFIESE-HSERRRIKAERLER--- 125
Query: 170 YYGFIANSAFVYGGQRLHEMV-LNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTA-LSSS 227
IA SA + ++ +N P++ + K A IA V A ++
Sbjct: 126 ----IAISAMKQSLKASFPVIQVNIPIQT----VIADTPKTAVRLIAYVDEAVRAEITQG 177
Query: 228 RNESSG--------LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA---LL 276
R S LI++GPEGDF+ EV + AG V LG RLR ETA + +
Sbjct: 178 RGYPSDFYHVGQDVLILIGPEGDFSPSEVESALLAGFAPVSLGESRLRTETAGLVACQWI 237
Query: 277 ATLMLC 282
TL C
Sbjct: 238 HTLQAC 243
>gi|332799054|ref|YP_004460553.1| Ribosomal RNA small subunit methyltransferase E [Tepidanaerobacter
acetatoxydans Re1]
gi|438002157|ref|YP_007271900.1| Ribosomal RNA small subunit methyltransferase E [Tepidanaerobacter
acetatoxydans Re1]
gi|332696789|gb|AEE91246.1| Ribosomal RNA small subunit methyltransferase E [Tepidanaerobacter
acetatoxydans Re1]
gi|432178951|emb|CCP25924.1| Ribosomal RNA small subunit methyltransferase E [Tepidanaerobacter
acetatoxydans Re1]
Length = 252
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 105/240 (43%), Gaps = 25/240 (10%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQH 113
+ + G++ H+ +VLR T D + + +G G I ID G V KL + +
Sbjct: 16 ITISGEDAHHIIRVLRYQTGDVIHISDGANTESIGVILDIDTQGPSV------KLKIIEK 69
Query: 114 TQWNVFAAFGTL-----KGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFL 165
+ + + TL KG + DW+++K TE+G P++T+ +++ K+G
Sbjct: 70 NKVESISPYITLFQGLPKGEKFDWILQKNTEIGVSEFIPIITQRTVVNISPSKLGHR--- 126
Query: 166 SCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP-----L 220
+G I A R+ + + D L + + L + +
Sbjct: 127 --KNRWGKIVKEA-AKQCMRMDIPKIGDVLSFDLALQEIKKYSLCIIPWENEKEISIRHI 183
Query: 221 VTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
+ ++ +++ S + +G EG F++ EV K AGA V LGP LR ETA I + LM
Sbjct: 184 IKDMNENKSISKIAVFIGSEGGFSKDEVEKAKAAGAVPVSLGPRILRTETAGIVACSVLM 243
>gi|60680491|ref|YP_210635.1| 16S ribosomal RNA methyltransferase RsmE [Bacteroides fragilis NCTC
9343]
gi|336408536|ref|ZP_08589027.1| hypothetical protein HMPREF1018_01042 [Bacteroides sp. 2_1_56FAA]
gi|375357347|ref|YP_005110119.1| hypothetical protein BF638R_1006 [Bacteroides fragilis 638R]
gi|383117258|ref|ZP_09938004.1| RsmE family RNA methyltransferase [Bacteroides sp. 3_2_5]
gi|423269094|ref|ZP_17248066.1| RsmE family RNA methyltransferase [Bacteroides fragilis CL05T00C42]
gi|423273345|ref|ZP_17252292.1| RsmE family RNA methyltransferase [Bacteroides fragilis CL05T12C13]
gi|423281790|ref|ZP_17260675.1| RsmE family RNA methyltransferase [Bacteroides fragilis HMW 615]
gi|60491925|emb|CAH06684.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
gi|251947421|gb|EES87703.1| RsmE family RNA methyltransferase [Bacteroides sp. 3_2_5]
gi|301162028|emb|CBW21572.1| conserved hypothetical protein [Bacteroides fragilis 638R]
gi|335935757|gb|EGM97705.1| hypothetical protein HMPREF1018_01042 [Bacteroides sp. 2_1_56FAA]
gi|392702403|gb|EIY95549.1| RsmE family RNA methyltransferase [Bacteroides fragilis CL05T00C42]
gi|392707946|gb|EIZ01059.1| RsmE family RNA methyltransferase [Bacteroides fragilis CL05T12C13]
gi|404582831|gb|EKA87522.1| RsmE family RNA methyltransferase [Bacteroides fragilis HMW 615]
Length = 229
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 98/242 (40%), Gaps = 49/242 (20%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWN- 117
+E H +VLRL+ D + L +GKG I L ++K + Q W+
Sbjct: 18 EEAQHCVRVLRLTAGDEISLTDGKGNFYRAEIS----VATHKRCLVNIKETIYQEPLWDG 73
Query: 118 --VFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
A T R +W EK TE+G +T FL+C F
Sbjct: 74 HLHIAMAPTKNMDRNEWFAEKATEIGFDELT-----------------FLNCRF------ 110
Query: 176 NSAFVYGGQRLHEMVLNP-PMKIDGLLPLVS---------------QSKLAFVAIAEATP 219
+ V +R+ +++++ + LP ++ Q +A E
Sbjct: 111 SERKVIKTERIEKILVSAIKQSLKARLPRLNEMTDFCTFIEKDFKGQKFIAHCYEGEKPL 170
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
L L+ + L+++GPEGDF+E+EV K +E G + LG RLR ETA + T+
Sbjct: 171 LKDVLTKGED---ALVLIGPEGDFSEEEVKKAIEKGFVPISLGKSRLRTETAALVACHTM 227
Query: 280 ML 281
+
Sbjct: 228 NM 229
>gi|294010080|ref|YP_003543540.1| hypothetical protein SJA_C1-00940 [Sphingobium japonicum UT26S]
gi|292673410|dbj|BAI94928.1| conserved hypothetical protein [Sphingobium japonicum UT26S]
Length = 253
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 103/235 (43%), Gaps = 16/235 (6%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
+G V V+G+ ++ V+R+ +D V LF+G+ G E + D D+V LE +
Sbjct: 26 LGEGVSVPVDGNPAHYLISVMRVKADDIVLLFDGRSG--EWAAKARDIRKRDLV-LEVVS 82
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
P + + ++ GR D + EK ELG + P+LT R + D L+
Sbjct: 83 RTRPPEDVPDFWLCCAPIRKGRIDLVAEKACELGVARLQPVLTR-----RAVVDK--LNL 135
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAE-ATPLVTALSS 226
+ Y + +A G L E L K+D LL + + F A PL L +
Sbjct: 136 DRLYAHLVEAAEQCGRTALPE--LGQMAKLDALLRDWPEGRWLFFADESGGEPLADTLKA 193
Query: 227 SRNESSGLIIVGPEGDFTEKEVNKIVE-AGATAVGLGPHRLRVETATIALLATLM 280
++ LI GPEG F E I A A V LGP LR ETA IA + M
Sbjct: 194 HPGPAAFLI--GPEGGFDPAEREAIRRVAKAIPVSLGPRILRAETAAIAATSAWM 246
>gi|423258690|ref|ZP_17239613.1| RsmE family RNA methyltransferase [Bacteroides fragilis CL07T00C01]
gi|423264338|ref|ZP_17243341.1| RsmE family RNA methyltransferase [Bacteroides fragilis CL07T12C05]
gi|387776270|gb|EIK38370.1| RsmE family RNA methyltransferase [Bacteroides fragilis CL07T00C01]
gi|392706604|gb|EIY99727.1| RsmE family RNA methyltransferase [Bacteroides fragilis CL07T12C05]
Length = 229
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 98/242 (40%), Gaps = 49/242 (20%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWN- 117
+E H +VLRL+ D + L +GKG I L ++K + Q W+
Sbjct: 18 EEAQHCVRVLRLTAGDEINLTDGKGNFYRAEIS----VATHKRCLVNIKETIYQEPLWDG 73
Query: 118 --VFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
A T R +W EK TE+G +T FL+C F
Sbjct: 74 HLHIAMAPTKNMDRNEWFAEKATEIGFDELT-----------------FLNCRF------ 110
Query: 176 NSAFVYGGQRLHEMVLNP-PMKIDGLLPLVS---------------QSKLAFVAIAEATP 219
+ V +R+ +++++ + LP ++ Q +A E
Sbjct: 111 SERKVIKTERIEKILVSAIKQSLKARLPRLNEMTDFCTFIEKDFKGQKFIAHCYEGEKPL 170
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
L L+ + L+++GPEGDF+E+EV K +E G + LG RLR ETA + T+
Sbjct: 171 LKDVLTKGED---ALVLIGPEGDFSEEEVKKAIEKGFVPISLGKSRLRTETAALVACHTM 227
Query: 280 ML 281
+
Sbjct: 228 NM 229
>gi|374324922|ref|YP_005078051.1| hypothetical protein HPL003_25560 [Paenibacillus terrae HPL-003]
gi|357203931|gb|AET61828.1| hypothetical protein HPL003_25560 [Paenibacillus terrae HPL-003]
Length = 254
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 112/242 (46%), Gaps = 21/242 (8%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQH 113
V V G++ H+ KV+R + D++ + +G + I++ + +E L++ H
Sbjct: 16 VIVAGEDARHIAKVMRGRSGDKIIVSDGVTREALAALATIEQDRVTATIIEPLEMTSEPH 75
Query: 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNFY 170
Q V A KG + + +++KCTE+GA P L+E + ++K G +
Sbjct: 76 VQ--VTIAQSLPKGDKMETVMQKCTEIGAAGFVPFLSERTVVQYDAKKEGKR----LERW 129
Query: 171 YGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA---------TPLV 221
+ +A R+ E ++ P+ LL S+ L + PL
Sbjct: 130 RKIVKEAAEQSHRNRIPE--ISAPLTWKELLASFSKYDLICYCYEKERGQQLRDVIQPLA 187
Query: 222 TALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
+S+ ++ L++VGPEG F+E E + +AGA + GLG LR ETA +A LA ++
Sbjct: 188 GQWTSA-DKPRVLLVVGPEGGFSEAESLEAEQAGAQSTGLGRRILRAETAGMAALACILY 246
Query: 282 CS 283
S
Sbjct: 247 ES 248
>gi|107099405|ref|ZP_01363323.1| hypothetical protein PaerPA_01000417 [Pseudomonas aeruginosa PACS2]
Length = 240
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 99/216 (45%), Gaps = 10/216 (4%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +VLR +T D V+LF+G G G + + + + V E + + +
Sbjct: 26 YIGRVLRHATGDAVQLFDGSGREYLGELVEVGKKNVRVELRE--QFAGQPDSPLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TP+++E ++ D ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVAEITPIVSER--CEVRLKDERADKRLQHWRQVAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G R +++PP+ ++ L L V A PL + SR +VGPEG
Sbjct: 142 G-RSSLPLIHPPLALEDWL-RGRGDDLRLVLHPVAAPLASHAPPSRLA----FLVGPEGG 195
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
++ EV + AG + LGP LR ETA + LA
Sbjct: 196 LSDAEVEQAQAAGFHSARLGPRVLRTETAPVVALAV 231
>gi|399075041|ref|ZP_10751350.1| RNA methyltransferase, RsmE family [Caulobacter sp. AP07]
gi|398039660|gb|EJL32789.1| RNA methyltransferase, RsmE family [Caulobacter sp. AP07]
Length = 238
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 110/236 (46%), Gaps = 17/236 (7%)
Query: 44 IPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVAL 103
+P G V D+ ++T V+RLS D + +FNG+ G + + G + A
Sbjct: 6 VPHPLKAGAGVAPSIDQSRYLTAVMRLSVGDEILVFNGQDGEWRASLTEAGKRGCLLRAE 65
Query: 104 EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNG 163
E + PQ ++ +K GR + +VEK ELGA+ V LT Q+R+ +
Sbjct: 66 EQTR---PQDHAPDLDLVVAMVKRGRVETIVEKAAELGARRVR--LT----QTRRTNVD- 115
Query: 164 FLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS-KLAFVAI-AEATPLV 221
FL +A G RL V++ P K+D +L + +L F +A P++
Sbjct: 116 FLKLGRLDAIAIEAAEQTG--RLDVPVIDDPQKLDKILDTWDPARRLVFCDEGGDARPMI 173
Query: 222 TALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLRVETATIALL 276
A++ + ++ I++GPEG F +E ++ V LGP LR +TA IA +
Sbjct: 174 EAVTGTGAPAA--ILIGPEGGFAPEERERLRSLPFVIPVSLGPRILRADTAAIAAM 227
>gi|399546150|ref|YP_006559458.1| ribosomal RNA small subunit methyltransferase E [Marinobacter sp.
BSs20148]
gi|399161482|gb|AFP32045.1| Ribosomal RNA small subunit methyltransferase E [Marinobacter sp.
BSs20148]
Length = 244
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 109/253 (43%), Gaps = 34/253 (13%)
Query: 44 IPRFFSQ-----GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
IPR F+ G +++ + H+ +VLR+ + LFNG G I + +
Sbjct: 3 IPRIFTDTPLQAGAEAQLDDNAAQHVGRVLRMQPGQALSLFNGDGHDYRALIASASKKNV 62
Query: 99 DV--------VALEDLKLVLPQHTQWNVFAAFGTL-KGGRADWLVEKCTELGAQSVTPLL 149
V + L++VL Q TL KG R D+ V+K TE+G + PL
Sbjct: 63 TVQVGHSTANSSESALEIVLGQ-----------TLSKGDRMDYAVQKATEMGVTRIVPLS 111
Query: 150 TELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKL 209
TE R GD N + ++A G R+ +++ P M I L + +
Sbjct: 112 TE-RCDVRLKGDREDKRLNHWRSVAISAAEQCGRARVPDIL--PVMNITEWLEYSQRCDV 168
Query: 210 AFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVE 269
V +L+S +S +++GPEG + E+ + ++G V LGP LR E
Sbjct: 169 RLVLHHRTE---QSLNSLAKPNSVALMIGPEGGLSADEIAQAEKSGFLPVTLGPRVLRTE 225
Query: 270 TATIALLATLMLC 282
TA +A +A LC
Sbjct: 226 TAPVAAMA---LC 235
>gi|153815335|ref|ZP_01968003.1| hypothetical protein RUMTOR_01569 [Ruminococcus torques ATCC 27756]
gi|317501690|ref|ZP_07959881.1| RsmE family RNA methyltransferase [Lachnospiraceae bacterium
8_1_57FAA]
gi|331088425|ref|ZP_08337340.1| hypothetical protein HMPREF1025_00923 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336439858|ref|ZP_08619462.1| hypothetical protein HMPREF0990_01856 [Lachnospiraceae bacterium
1_1_57FAA]
gi|145847397|gb|EDK24315.1| RNA methyltransferase, RsmE family [Ruminococcus torques ATCC
27756]
gi|316896941|gb|EFV19021.1| RsmE family RNA methyltransferase [Lachnospiraceae bacterium
8_1_57FAA]
gi|330408192|gb|EGG87680.1| hypothetical protein HMPREF1025_00923 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336014774|gb|EGN44606.1| hypothetical protein HMPREF0990_01856 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 255
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 109/249 (43%), Gaps = 17/249 (6%)
Query: 45 PRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRI--DRTGLDVVA 102
P + ++ I+ + G + HM VLR+ + V + +G+G C+ R D+ LDV
Sbjct: 8 PSWITESEIL-IRGADLNHMKNVLRMKVGEDVRINDGQGTTYLCCLNRYEKDQAVLDVFR 66
Query: 103 LEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDN 162
D + LP + G KG + +W+V+K ELGA + P + + K+ +
Sbjct: 67 KLDTETELPSE----IILFQGLPKGDKMEWIVQKSVELGAHKIVPFSAKRSVV--KLDEK 120
Query: 163 GFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGL-----LPLVSQSKLAFVAIAEA 217
+ + IA A G+ + V + L L +V +AE
Sbjct: 121 KAVKKQERWQLIAKGAAEQSGRGVIPEVCGVCSFTEALEQAESLDVVLIPYELEEGMAET 180
Query: 218 TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
++ + +S G I +GPEG F E EV + E GA V LG LR ETA + L+
Sbjct: 181 VRVIEQIEP--GQSVG-IFIGPEGGFEEAEVLRAKEKGARPVTLGKRILRTETAGLTTLS 237
Query: 278 TLMLCSDSQ 286
LM +S+
Sbjct: 238 ILMYHIESR 246
>gi|390453065|ref|ZP_10238593.1| hypothetical protein PpeoK3_03475 [Paenibacillus peoriae KCTC 3763]
Length = 254
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 110/239 (46%), Gaps = 21/239 (8%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQH 113
V V G++ H+TKV+R + D++ + +G + I++ + +E L++ H
Sbjct: 16 VIVAGEDARHITKVMRGRSGDKIIVSDGVSREALAALDTIEQDHVTATIVELLEMTSEPH 75
Query: 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNFY 170
Q V A KG + + +++KCTE+GA P L+E + ++K G +
Sbjct: 76 VQ--VTIAQSLPKGDKMETVMQKCTEIGAAGFIPFLSERTVVQYDAKKEGKR----LERW 129
Query: 171 YGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT---------PLV 221
+ +A R+ E ++ PM LL + L + PL
Sbjct: 130 RKIVKEAAEQSHRNRIPE--ISAPMTWKELLASFAGYDLICYCYEKEQGRQLRDVIQPLA 187
Query: 222 TALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
+S ++ L++VGPEG FTE E + +AGA + GLG LR ETA +A LA ++
Sbjct: 188 GPWASV-DKPRVLLVVGPEGGFTEAESLEAEQAGAQSTGLGRRILRAETAGMAALACIL 245
>gi|256820668|ref|YP_003141947.1| 16S ribosomal RNA methyltransferase RsmE [Capnocytophaga ochracea
DSM 7271]
gi|256582251|gb|ACU93386.1| protein of unknown function DUF558 [Capnocytophaga ochracea DSM
7271]
Length = 246
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 100/232 (43%), Gaps = 17/232 (7%)
Query: 57 EGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQW 116
+ +E H+ KVLR D + + NGKG L E + +V L+ L LP+
Sbjct: 21 DKEESQHIVKVLRKKAGDILHITNGKGLLFEAKLDFATPKQCEVSILK-CTLQLPRPYYL 79
Query: 117 NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIAN 176
++ A T R +W +EK TE+G +TP++ E H + I F +
Sbjct: 80 HLVVA-PTKMNERYEWFLEKATEIGVDEITPIICE-HSERTTIKVERFE--KILLSAMKQ 135
Query: 177 SAFVYGGQRLHEMVLNPPMK----IDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESS 232
S Y + LN P+ +L S +A E L AL S
Sbjct: 136 SLQCYLPK------LNAPIASAQFFKTMLTDSSAKYIAHCQENEKRLLSRALKSF--PER 187
Query: 233 GLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSD 284
++++GPEGDF+ E+N ++ + LG RLR ETA I T+ + ++
Sbjct: 188 IIVLIGPEGDFSTNEINTALQQAFVPISLGDTRLRTETAAIVACHTVAVINE 239
>gi|224369186|ref|YP_002603350.1| hypothetical protein HRM2_20880 [Desulfobacterium autotrophicum
HRM2]
gi|223691903|gb|ACN15186.1| conserved hypothetical protein [Desulfobacterium autotrophicum
HRM2]
Length = 250
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 100/227 (44%), Gaps = 13/227 (5%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK--LVLPQH 113
+ G E H+ VLRL DRVEL +G+G + I+ + L+ P H
Sbjct: 18 ITGQEARHLGTVLRLGPGDRVELVDGRGTIARAEIETLSHNTAVFTILDSSSPGAESPVH 77
Query: 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGF 173
+ A G LK + D LV TELG P + + K S +
Sbjct: 78 ----ITLAQGMLKDKKMDMLVRHLTELGICQWIPFYSSRSIP--KPDAKRIYSRMERWNK 131
Query: 174 IANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQ--SKLAFVAIAEATPLVTALSSSRNES 231
IA A G+ + ++ +P + D LL + K+AF A A P+ T + S +
Sbjct: 132 IAREALKQCGRSMLPLIEDP-IPFDQLLKTSTDYDGKIAFWENATA-PIHTIQTPSMEPA 189
Query: 232 SGLII-VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
+I+ +GPEG F+ E++ E G ++ LGP LR ETA++ A
Sbjct: 190 KKIIVLIGPEGGFSSFEIDAARENGFSSCSLGPRILRAETASLTAAA 236
>gi|260888226|ref|ZP_05899489.1| RNA methyltransferase, RsmE family [Selenomonas sputigena ATCC
35185]
gi|330838435|ref|YP_004413015.1| Ribosomal RNA small subunit methyltransferase E [Selenomonas
sputigena ATCC 35185]
gi|260862060|gb|EEX76560.1| RNA methyltransferase, RsmE family [Selenomonas sputigena ATCC
35185]
gi|329746199|gb|AEB99555.1| Ribosomal RNA small subunit methyltransferase E [Selenomonas
sputigena ATCC 35185]
Length = 261
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 107/239 (44%), Gaps = 9/239 (3%)
Query: 44 IPRFFSQGGI---VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV 100
+ R F +G I + V G + H+ +V+R +++ + +G GG E + + +
Sbjct: 1 MRRVFLEGEIADTMEVRGADAHHLQRVMRAKLGEKLLVADGAGGSAEAEVAGFADGRVQL 60
Query: 101 VALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIG 160
+ L + +F KG R D++V+K TELG + P+L++ ++ R
Sbjct: 61 RFVRRLSEAAESQAEIELFQCLP--KGDRMDFIVQKTTELGVACIRPVLSQ-NVVVRYDE 117
Query: 161 DNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMK--IDGLLPLVSQSKLAFVAIAEAT 218
+ A +A G R+ E++ P++ ++G +L F + E
Sbjct: 118 KKARARVERWQKIAAEAAKQCGRTRIPEVMPIVPLRAAMEGQGAAEYALRLFFYEMEERR 177
Query: 219 PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
L T LS S ++VGPEG F E E V G +AV LG LRV+TA I LA
Sbjct: 178 ELRTVLSDSEARRI-FMLVGPEGGFDEAEAQLAVAHGFSAVTLGRRILRVDTAAIVALA 235
>gi|152984501|ref|YP_001345914.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
PA7]
gi|150959659|gb|ABR81684.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
Length = 240
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 18/220 (8%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +VLR +T D V+LF+G G G + + + + V E + + +
Sbjct: 26 YIGRVLRHATGDAVQLFDGSGREYLGELIEVGKKNVRVELRE--QFAGQPDSPLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TP+++E ++ D ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVAEITPIVSE--RCEVRLKDERADKRLQHWRQVAISACEQC 141
Query: 183 GQ----RLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVG 238
G+ R+H PP+ ++ L +L V P+ L+S +S +VG
Sbjct: 142 GRSSLPRIH-----PPLALEDWL-RQRDDELRLV----LHPVAAPLASHARPASLAFLVG 191
Query: 239 PEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
PEG + EV + AG + LGP LR ETA + LA
Sbjct: 192 PEGGLGDAEVEQAQAAGFHSARLGPRVLRTETAPVVALAV 231
>gi|134280575|ref|ZP_01767286.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei
305]
gi|134248582|gb|EBA48665.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei
305]
Length = 255
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 100/239 (41%), Gaps = 21/239 (8%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF + + + D H VLRL D + LF+G GG + ID+ G
Sbjct: 10 VPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKRG- 67
Query: 99 DVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
AL + P + + V A G G + +W++EK ELG +V PL T +
Sbjct: 68 ---ALARIDAFEPAEAEPPYRVTLAQGIAGGDKMEWVIEKAVELGVAAVAPLSTARGV-V 123
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMK-----IDGLLPLVSQSKLAF 211
R G+ + + G + S G RL E+ P++ +D L + +L
Sbjct: 124 RLSGERADKRVSHWRGVVRASCEQCGRNRLPEIA---PVRGFDAWLDALPATPADGELRL 180
Query: 212 VAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
+ A+ +L ++ +++GPEG E G A+ LGP LR ET
Sbjct: 181 LLSPRASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAALSLGPRVLRTET 239
>gi|386056488|ref|YP_005973010.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
M18]
gi|347302794|gb|AEO72908.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
M18]
Length = 240
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 99/216 (45%), Gaps = 10/216 (4%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +VLR ++ D V+LF+G G G + + + + V E + + +
Sbjct: 26 YIGRVLRHASGDAVQLFDGSGREYLGELVEVGKKNVRVELRE--QFAGQPDSPLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TP+++E ++ D ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVAEITPIVSER--CEVRLKDERADKRLQHWRQVAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G R +++PP+ ++ L L V A PL + SR +VGPEG
Sbjct: 142 G-RSSLPLIHPPLALEDWL-RGRDDDLRLVLHPVAAPLASHAPPSRLA----FLVGPEGG 195
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
++ EV + AG + LGP LR ETA + LA
Sbjct: 196 LSDAEVEQAQAAGFHSARLGPRVLRTETAPVVALAV 231
>gi|441497167|ref|ZP_20979385.1| Ribosomal RNA small subunit methyltransferase E [Fulvivirga
imtechensis AK7]
gi|441439096|gb|ELR72422.1| Ribosomal RNA small subunit methyltransferase E [Fulvivirga
imtechensis AK7]
Length = 233
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 99/244 (40%), Gaps = 30/244 (12%)
Query: 51 GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVL 110
G++ ++ +E H KVLR T D +++ +G+G + R+ E +
Sbjct: 11 NGVLFLDEEESRHCIKVLRYKTGDTIQVQDGRGNIFS---VRLTSAHQKKCEFEVIDTEF 67
Query: 111 PQHTQWNVFAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCN- 168
Q + + K R +W VEK E+G Q ++ F+SC
Sbjct: 68 QQPPPYYIHVGIAPTKNLDRIEWFVEKTVEIGVQEIS-----------------FISCKN 110
Query: 169 -----FYYGFIANSAFVYGGQRLHEMV--LNPPMKIDGLLPLVSQSKLAFVAIAEATPLV 221
+ A Q H + LN + L ++++ ++A + V
Sbjct: 111 SERKVLKLDRLERKALSAMKQSQHRYMPKLNELRSFNELTTKITETD-KYIAHVDFDNPV 169
Query: 222 TALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
S++ +++GPEGDFT +EV ++ G V LG RLR ETA I TL L
Sbjct: 170 GLARSAKAGGKYCVLIGPEGDFTSEEVEYALQNGFKKVSLGSSRLRTETAGIVACHTLNL 229
Query: 282 CSDS 285
+D+
Sbjct: 230 INDA 233
>gi|254293386|ref|YP_003059409.1| 16S ribosomal RNA methyltransferase RsmE [Hirschia baltica ATCC
49814]
gi|254041917|gb|ACT58712.1| protein of unknown function DUF558 [Hirschia baltica ATCC 49814]
Length = 256
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 116/253 (45%), Gaps = 33/253 (13%)
Query: 44 IPRFFSQ-----GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
IPR F + G + + ++ ++ +VLRLS ND V +FNG+ G + + R+
Sbjct: 4 IPRLFVKADLTLGAPIALTSEQANYLFRVLRLSKNDAVRVFNGRDGEWRASVTEVMRSA- 62
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
+ LE+L ++PQ ++ F LK D++VEK TELG + P++T K
Sbjct: 63 GFLCLEEL--IVPQAVIGDLQLLFAPLKKTCTDFVVEKATELGVTMIQPVIT-------K 113
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMK-IDGLLPLVSQSKLAFV----- 212
+ + + +A +RL ++ P++ ++ L +L F
Sbjct: 114 RTQTSTVRVSRLEKIVEEAA--EQTERLDIPLVQEPIQLLEALGKWDKNRRLVFCDEAGD 171
Query: 213 --------AIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGP 263
+ A P++ A+S ++ + I++GPEG F+ +E + + V LGP
Sbjct: 172 DPTENWGGDVGRARPMMEAISELKDGLAA-ILIGPEGGFSPEERKYLRQQDYVIPVTLGP 230
Query: 264 HRLRVETATIALL 276
LR ETA ++ L
Sbjct: 231 RILRAETAAVSAL 243
>gi|333029175|ref|ZP_08457236.1| Ribosomal RNA small subunit methyltransferase E [Bacteroides
coprosuis DSM 18011]
gi|332739772|gb|EGJ70254.1| Ribosomal RNA small subunit methyltransferase E [Bacteroides
coprosuis DSM 18011]
Length = 231
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 103/262 (39%), Gaps = 62/262 (23%)
Query: 44 IPRFFSQG--GIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVV 101
+P F++ I + DE H ++VLRL+ D + L +GKG E I T
Sbjct: 1 MPIFYTPNIDQIKELPSDEAKHCSRVLRLTEGDHITLTDGKGNFYEA---EITLTTPKKC 57
Query: 102 ALEDLKLVLPQHTQWNVFAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHLQSRKIG 160
L+ P + + A G K R +W+ EK TE+G T
Sbjct: 58 LFNILETHTPTPPKVYIHLAMGPTKNMDRNEWVAEKATEIGFNEFT-------------- 103
Query: 161 DNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFV-AIAEATP 219
FL+C F I + V E +L MK QSK A + + E TP
Sbjct: 104 ---FLNCQFSERKIIKTDRV-------EKILVSAMK---------QSKRATLPKLNEMTP 144
Query: 220 LVTALSSSRNE----------------------SSGLIIVGPEGDFTEKEVNKIVEAGAT 257
T ++ N + LI++GPEGDF+ +E+ ++ G
Sbjct: 145 FKTFITQPFNGQKFIAHCYKENQELLKELYTIGENALILIGPEGDFSPEEIQLALDNGFQ 204
Query: 258 AVGLGPHRLRVETATIALLATL 279
+ LG RLR ETA I +T+
Sbjct: 205 PISLGDSRLRTETAAIFACSTI 226
>gi|209886372|ref|YP_002290229.1| 16S ribosomal RNA methyltransferase RsmE [Oligotropha
carboxidovorans OM5]
gi|337740090|ref|YP_004631818.1| ribosomal RNA small subunit methyltransferase E [Oligotropha
carboxidovorans OM5]
gi|386029107|ref|YP_005949882.1| ribosomal RNA small subunit methyltransferase E [Oligotropha
carboxidovorans OM4]
gi|209874568|gb|ACI94364.1| conserved hypothetical protein [Oligotropha carboxidovorans OM5]
gi|336094175|gb|AEI02001.1| ribosomal RNA small subunit methyltransferase E [Oligotropha
carboxidovorans OM4]
gi|336097754|gb|AEI05577.1| ribosomal RNA small subunit methyltransferase E [Oligotropha
carboxidovorans OM5]
Length = 246
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 107/240 (44%), Gaps = 33/240 (13%)
Query: 45 PRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PR F G V + ++ ++ VLRLS +D V +FNG+ G E Q R L+
Sbjct: 9 PRLFVDAPLGAGREVALAREQGHYLGNVLRLSASDTVLVFNGRDG--EWRAQITGRKRLE 66
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
L L+ PQ ++ F LK R D++V+K E+GA +TP LT+ SR
Sbjct: 67 --QLTPLEQTRPQDPPCDLHLLFAPLKHARLDYMVQKAVEMGASRLTPTLTQFTQVSR-- 122
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQ-----SKLAFVAI 214
++ +A G +LN P +ID LPL + K V
Sbjct: 123 -----INLERMRANAIEAAEQCG-------ILNLP-EIDEPLPLTGRLAERDGKRLLVFC 169
Query: 215 AEATPLVT---ALSSSRNESSGLIIVGPEGDFTEKEVNKIV-EAGATAVGLGPHRLRVET 270
EA P + AL + N+ +++GPEG F+E E ++ + + LGP LR +T
Sbjct: 170 DEAAPQASPLAALKEAANDGGLDVLIGPEGGFSEDERAALLAQPRLVRLSLGPRILRADT 229
>gi|114319523|ref|YP_741206.1| hypothetical protein Mlg_0361 [Alkalilimnicola ehrlichii MLHE-1]
gi|114225917|gb|ABI55716.1| 16S rRNA m(3)U-1498 methyltransferase [Alkalilimnicola ehrlichii
MLHE-1]
Length = 248
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 107/228 (46%), Gaps = 27/228 (11%)
Query: 66 KVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQH------TQWNVF 119
K RL D + LF+G+GG ++ ++R + +L L H + +
Sbjct: 29 KAFRLRPGDELVLFDGRGGEYRARLEALER--------REARLALLGHHPVERESPLALT 80
Query: 120 AAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNFYYGFIAN 176
G +G R D+ V+K ELG + + P+ T+ + L++R+ ++ +A
Sbjct: 81 LVQGVARGERMDFTVQKAVELGVRRIVPVFTDNGVVRLEARRREKR-----RQHWQRVAV 135
Query: 177 SAFVYGGQ-RLHEMVLNPPMKIDGLLPLVSQSKLA-FVAIAEATPLVTALSSSRNE-SSG 233
+A G+ R+ E+ PP + + P ++ + + + + AL+ + E
Sbjct: 136 AACEQCGRNRVPEVA--PPRPLAEVWPELAGGEAGQGLVLTPGGRSLRALADAHPELRRA 193
Query: 234 LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
+++GPEG ++ EV + EAGA VGLGP LR ETA I LA L L
Sbjct: 194 WLLIGPEGGLSDAEVARACEAGAEPVGLGPRILRTETAGITALAALQL 241
>gi|406674160|ref|ZP_11081371.1| RsmE family RNA methyltransferase [Bergeyella zoohelcum CCUG 30536]
gi|405584571|gb|EKB58461.1| RsmE family RNA methyltransferase [Bergeyella zoohelcum CCUG 30536]
Length = 231
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 98/221 (44%), Gaps = 17/221 (7%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
DE H+TKVLR+ + L +G+G + G + I ++V +E L + Q ++
Sbjct: 17 DEVQHITKVLRIKEGTVLYLTDGQGNSVRGELT-IQGKKANLVHVEHLPKLHKSSFQLHI 75
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSA 178
A T R ++ +EK E+G +T LLT+ RK N + A
Sbjct: 76 AIA-PTKNIDRMEFFLEKAVEMGVDEITFLLTDN--SERK---------NINLERLEKQA 123
Query: 179 FVYGGQ--RLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLII 236
Q R++ +NP K+ + + S+ FVA L+ +
Sbjct: 124 IAASKQSLRMYFPKINPLTKLSDFIK--NHSENIFVAHCNERFERVLLTEFHFGEKNTFL 181
Query: 237 VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
VGPEGDF+++E+ + E AV LG RLR ETA I L A
Sbjct: 182 VGPEGDFSQREIEMLSEKNIKAVSLGTQRLRTETAGIFLSA 222
>gi|167765138|ref|ZP_02437251.1| hypothetical protein BACSTE_03524 [Bacteroides stercoris ATCC
43183]
gi|167696766|gb|EDS13345.1| RNA methyltransferase, RsmE family [Bacteroides stercoris ATCC
43183]
Length = 232
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 103/246 (41%), Gaps = 49/246 (19%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWN- 117
+E H +VLRL T D V L +GKG I T L ++ +PQ W+
Sbjct: 18 EEAAHAVRVLRLQTGDEVTLTDGKGNFYRAEIS----TATTKRCLVNILETIPQAPLWSG 73
Query: 118 --VFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
A T R +W EK TE+G +T FL+C F I
Sbjct: 74 HLHIAMAPTKNMDRTEWFAEKATEIGFDELT-----------------FLNCRFSERKII 116
Query: 176 NSAFVYGGQRLHEMVLNP-PMKIDGLLP----------LVSQSKLAFVAIAEA----TPL 220
+ +R+ +++++ + LP +SQ IA PL
Sbjct: 117 KT------ERIAKILVSAIKQSLKARLPRLNGMTDFNRFISQPFEGRKFIAHCYEGEKPL 170
Query: 221 VTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
+ + R L+++GPEGDF+E+EV + +E G + LG RLR ETA AL+A +
Sbjct: 171 LKDVV--RKGEDALVLIGPEGDFSEEEVKQAIENGFEPISLGRSRLRTETA--ALVACHI 226
Query: 281 LCSDSQ 286
L +Q
Sbjct: 227 LNLQNQ 232
>gi|89256081|ref|YP_513443.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
subsp. holarctica LVS]
gi|115314557|ref|YP_763280.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
subsp. holarctica OSU18]
gi|169656563|ref|YP_001428163.2| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|290954533|ref|ZP_06559154.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
subsp. holarctica URFT1]
gi|422938516|ref|YP_007011663.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
subsp. holarctica FSC200]
gi|423050425|ref|YP_007008859.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
subsp. holarctica F92]
gi|89143912|emb|CAJ79131.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica LVS]
gi|115129456|gb|ABI82643.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica OSU18]
gi|164551631|gb|ABU61207.2| conserved hypothetical protein [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|407293667|gb|AFT92573.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
subsp. holarctica FSC200]
gi|421951147|gb|AFX70396.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
subsp. holarctica F92]
Length = 242
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 110/241 (45%), Gaps = 10/241 (4%)
Query: 41 RGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGL-IEGCIQRIDRTGLD 99
RG ++ I + G+ + + +LRL +D +ELFN L + I ID +
Sbjct: 5 RGFFSDISTKTTIFNISGEYYNYFKNMLRLKKSDLIELFNNTDSLQYKTKIITIDNKNIT 64
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
+ ++ + + N++ A +K + +++K T+LG ++ P++TE + K
Sbjct: 65 LEVIDKKHISNENNYITNLYQAI--IKSENFELVIQKATKLGVNNIYPIITEF--TNHKF 120
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT- 218
NGF + IA + G R+ ++ P+ I+ L + L +A
Sbjct: 121 DKNGFDKKLERWHKIAIAGSEQCG-RVFIPKIHTPIDINDLQMPQNDLNLVLCPYTQAKQ 179
Query: 219 PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
V + SS N + I +GPEG F++KE++K + LG L+ ETA I +L+
Sbjct: 180 DFVQKVKSSTNFN---IFIGPEGGFSDKEMSKFHSNNFYTINLGKRILKAETAPINILSI 236
Query: 279 L 279
+
Sbjct: 237 I 237
>gi|74316173|ref|YP_313913.1| 16S ribosomal RNA methyltransferase RsmE [Thiobacillus
denitrificans ATCC 25259]
gi|74055668|gb|AAZ96108.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
25259]
Length = 242
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 10/199 (5%)
Query: 73 NDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADW 132
D + LFNG+GG ++RI R + VA+ + + + ++ + A G G R D+
Sbjct: 37 GDALTLFNGRGGEYTASVERITRDEV-AVAITGFREI-ERESRLAITLAQGISSGERMDY 94
Query: 133 LVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLN 192
++K TELG ++ P+ + + + G+ + G +A++ G RL +
Sbjct: 95 TLQKATELGVTAIQPIAAKRSV-VKLAGERAEKRVAHWQGVVASACEQCGRNRLPSIA-- 151
Query: 193 PPMKIDGLLPLVSQSKLAFVA-IAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKI 251
P+ + L + +L F++ +A+A A S R+ ++I GPEG F E+ +
Sbjct: 152 APLPLAQWLGTGTDERLLFLSPLAQARLADLAAPSGRD----VLIAGPEGGFEADEIAAL 207
Query: 252 VEAGATAVGLGPHRLRVET 270
AGA + LGP LR ET
Sbjct: 208 HAAGAVPIRLGPRVLRTET 226
>gi|345859676|ref|ZP_08812013.1| RNA methyltransferase family protein [Desulfosporosinus sp. OT]
gi|344327272|gb|EGW38713.1| RNA methyltransferase family protein [Desulfosporosinus sp. OT]
Length = 245
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 100/236 (42%), Gaps = 27/236 (11%)
Query: 61 FW-------HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQH 113
FW H+ KVLRLS D + F+ G I +I+ + L + H
Sbjct: 14 FWLRDSERDHLVKVLRLSPGDVIVGFDNTGMEYTAVILKIEDKSVTCGILSTDHPDVEAH 73
Query: 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNFY 170
T +V+ G KG + +W+++K TELG + PL + +HL+ K +
Sbjct: 74 T--SVYIVAGLSKGEKMEWVIQKGTELGMVGLVPLRAKRSVMHLEGSKAHERVVRWQKIA 131
Query: 171 YGFIANSAFVYGGQRLH-----EMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALS 225
S V Q L ++ N P+ L+P + + L + L
Sbjct: 132 SEAAKQSHRVQEPQILEVSDWKDLKENLPLDTQWLIPYEEE---------KTQRLASVLD 182
Query: 226 SSRNESSGLIIVGPEGDFTEKEVNKIVEA-GATAVGLGPHRLRVETATIALLATLM 280
+ +E I++GPEG F E EV E GA +V LGP LR ETA +A L ++
Sbjct: 183 TLDSERPIAILIGPEGGFDEAEVALAQEKLGAQSVSLGPRILRTETAALAALTMVL 238
>gi|444371476|ref|ZP_21171031.1| RNA methyltransferase, RsmE family [Burkholderia cenocepacia
K56-2Valvano]
gi|443595384|gb|ELT63976.1| RNA methyltransferase, RsmE family [Burkholderia cenocepacia
K56-2Valvano]
Length = 255
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 103/236 (43%), Gaps = 15/236 (6%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF + + + D H+ +VLRL D + LF+G GG + +D+
Sbjct: 10 VPRFFVDAALRADATLALPADVARHV-QVLRLQPGDVLALFDGTGGQYRARLVEVDKRS- 67
Query: 99 DVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
AL + P + + V A G G + DW++EK ELG +V PL T +
Sbjct: 68 ---ALVQVDSFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGV-V 123
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEM--VLNPPMKIDGLLPLVSQSKLAFVAI 214
+ G+ + G + S G R+ ++ V+ +D L + +L +
Sbjct: 124 KLSGERADKRVAHWRGVVRASCEQCGRNRVPDVAPVIGFSAWLDALPAAPADGELRLLLS 183
Query: 215 AEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
A+ +L + ++ +++GPEG + E N G TA+ LGP LR ET
Sbjct: 184 PRASIPFASLPDAPPAAAVTLLIGPEGGLSPDEENAARARGFTALSLGPRVLRTET 239
>gi|291615399|ref|YP_003525556.1| hypothetical protein Slit_2944 [Sideroxydans lithotrophicus ES-1]
gi|291585511|gb|ADE13169.1| protein of unknown function DUF558 [Sideroxydans lithotrophicus
ES-1]
Length = 245
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 100/219 (45%), Gaps = 10/219 (4%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVL-PQHTQWNVFAA 121
H ++VLRL D V++F+G G ++ I I+ G V+ L +L+ + Q + ++ A
Sbjct: 27 HASRVLRLRVGDAVQIFDGLGNALDATINAIN--GKHVL-LGNLQTFMGQQESGLHIALA 83
Query: 122 FGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVY 181
+ DW+V+K TELGA + P+ T L +R + ++
Sbjct: 84 QAMCTSEKMDWVVQKATELGAAEIIPVQT-LRSVARLSSPRAEKRAEHWRNVAVSACEQC 142
Query: 182 GGQRLHEMVLNPPMKIDGLLPLVSQSKLA-FVAIAEATPLVTALSSSRNESSGLIIVGPE 240
G L + L P ++ L V + F+ + + S R + +++GPE
Sbjct: 143 GRNTLPQ--LQTPQELGTWLEDVRHTAGGKFILLPGGA--INLQSQPRPQGRATLLIGPE 198
Query: 241 GDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
G FT E N +AG + LGP LR ETA +A +A L
Sbjct: 199 GGFTADEANIAQQAGFIPILLGPRVLRTETAALAGIAAL 237
>gi|402493451|ref|ZP_10840203.1| 16S ribosomal RNA methyltransferase RsmE [Aquimarina agarilytica
ZC1]
Length = 236
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 104/229 (45%), Gaps = 18/229 (7%)
Query: 49 SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKL 108
SQ ++ +E H+ KVLR + +D + + NGKG L + +I G++ +
Sbjct: 11 SQDTEIQFSKEESRHIIKVLRKTLDDDLFITNGKGYLFKA---KITLAGINKCIASITET 67
Query: 109 VLPQHTQWNVFAAFGTLK-GGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
+ ++ A K R +W +EK TE+G Q +TP++ + H + + I F
Sbjct: 68 EYQDKEKHHIHLAVAPTKMNDRYEWFLEKATEIGIQEITPIICD-HSERKAIKFERFQK- 125
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP---LVTAL 224
I SA R H LN + + +++ +A E T L L
Sbjct: 126 ------IIQSA-TKQSLRYHIPKLNNATTLKDFIT-NHKNETCLIAHCEETKRTSLKQIL 177
Query: 225 SSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
S++ + + L+I GPEGDF+ KE++ + + LG RLR ETA I
Sbjct: 178 SNTESLNFTLLI-GPEGDFSTKEIDLALTNNYQPITLGNTRLRTETAAI 225
>gi|423303638|ref|ZP_17281637.1| RsmE family RNA methyltransferase [Bacteroides uniformis
CL03T00C23]
gi|423307639|ref|ZP_17285629.1| RsmE family RNA methyltransferase [Bacteroides uniformis
CL03T12C37]
gi|392688002|gb|EIY81293.1| RsmE family RNA methyltransferase [Bacteroides uniformis
CL03T00C23]
gi|392689508|gb|EIY82785.1| RsmE family RNA methyltransferase [Bacteroides uniformis
CL03T12C37]
Length = 232
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 101/242 (41%), Gaps = 41/242 (16%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRID-RTGLDVVALEDLKLVLPQHTQW- 116
+E H +VLRL D V L +GKG C R + T + L ++ LPQ W
Sbjct: 18 EEAAHAVRVLRLQAGDEVMLTDGKG-----CFYRAEISTATNKRCLVNILETLPQAPLWK 72
Query: 117 -NVFAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
++ A K R +W EK TE+G +T FL+C F +
Sbjct: 73 GHLHIAMAPTKNMDRTEWFAEKATEIGFDELT-----------------FLNCRFSERKV 115
Query: 175 ANSAFVYG------GQRLHEMV--LNPPMKIDGLL--PLVSQSKLAFVAIAEATPLVTAL 224
+ + Q L + LN + + P Q +A E PL+ +
Sbjct: 116 IKTERISKILVSAIKQSLKARLPQLNEMTDFNKFITQPFPGQKFIAHCYEGEK-PLLKDM 174
Query: 225 SSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSD 284
E L+++GPEGDF+E+EV K E + LG RLR ETA AL+A +L
Sbjct: 175 VHP--EEDALVLIGPEGDFSEEEVRKATENDFIPISLGKSRLRTETA--ALVACHILNLQ 230
Query: 285 SQ 286
+Q
Sbjct: 231 NQ 232
>gi|451343576|ref|ZP_21912647.1| RsmE family RNA methyltransferase [Eggerthia catenaformis OT 569 =
DSM 20559]
gi|449337673|gb|EMD16830.1| RsmE family RNA methyltransferase [Eggerthia catenaformis OT 569 =
DSM 20559]
Length = 244
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 111/245 (45%), Gaps = 18/245 (7%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+ R+F + G+++ + HM KVLR S D+V + + I ID+
Sbjct: 1 MQRYFIKNDSHKDGVIQSTDNMIRHMKKVLRYSNGDQVICVDENANVYLCTIADIDKG-- 58
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
+ + + L +V +G KG + +++++K TELG + + PL T+ + +
Sbjct: 59 --ILIREKGLQEYNELDVDVTLVYGLPKGDKFEFILQKATELGVKRIVPLRTKRSII--R 114
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT 218
I D FL Y I A +R + +L P I L +S + VA E++
Sbjct: 115 IDDKRFLKKYERYNRIITEA-CEQCERETKPILEPLTVISKLGQY--RSDVNLVAYEESS 171
Query: 219 ----PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274
V + R ++S I+VGPEG F E+ ++ + G + LG LR ETA +
Sbjct: 172 REGEKSVLKKALDRIKTSITIVVGPEGGFDPLEIKEMNKLGFESCSLGKRILRTETAPLY 231
Query: 275 LLATL 279
+L+ +
Sbjct: 232 MLSVI 236
>gi|70733090|ref|YP_262863.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas protegens
Pf-5]
gi|68347389|gb|AAY94995.1| 16S rRNA methyltransferase, RsmE family [Pseudomonas protegens
Pf-5]
Length = 239
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 99/219 (45%), Gaps = 16/219 (7%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +VLR++ +++F+G G G + + + + V E Q + +
Sbjct: 26 YIGRVLRMAEGAALQVFDGSGTEFRGALVEVGKKRVRVQLNESF--AGQQESPLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G +G R DW ++K TELG +TP+ +E + L+ + D L ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVSEITPIFSERCEVRLKDER-ADKRLL----HWRQVAISAC 138
Query: 180 VYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGP 239
G R V++PP+ L + Q++ + P+ L S +S ++GP
Sbjct: 139 EQCG-RSQVPVIHPPVL---LADWIKQARADLKLVLH--PVAQPLESHAKPASLAFLIGP 192
Query: 240 EGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
EG T+ EV AG LGP LR ETA + LA
Sbjct: 193 EGGLTDAEVELSHSAGFLPARLGPRVLRTETAPVVALAV 231
>gi|444921006|ref|ZP_21240844.1| Ribosomal RNA small subunit methyltransferase E [Wohlfahrtiimonas
chitiniclastica SH04]
gi|444507742|gb|ELV07916.1| Ribosomal RNA small subunit methyltransferase E [Wohlfahrtiimonas
chitiniclastica SH04]
Length = 245
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 103/227 (45%), Gaps = 5/227 (2%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQH 113
V ++ +F H+ +V+R D + LFNG+GG I I + L V+ + + +
Sbjct: 15 VELKDPQFNHIVRVMRKKVGDHLVLFNGEGGEYPAIISDIGKRSLTVIL--HAHIAIDRS 72
Query: 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGF 173
++V K + D++ +K ELG +TP ++E D + + G
Sbjct: 73 APFDVHLIQSFAKFDKMDFVFQKAVELGVNRITPFMSEHSSFKLNDSDKQEKKLSHWQGI 132
Query: 174 IANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSG 233
+ ++ G ++ +L P + + L+ ++ L + + + E +
Sbjct: 133 LESACEQSGLNKV--PMLTPFASLKNIKSLLLDRPYLILSPTAEYSLGHWIKNHQTEHAF 190
Query: 234 LIIVGPEGDFTEKEVNKI-VEAGATAVGLGPHRLRVETATIALLATL 279
II+GPEG F+E E+ + + V LGP LR ETA ++++++L
Sbjct: 191 GIIIGPEGGFSEAELAWLSSQDNCHPVTLGPRILRTETAALSVISSL 237
>gi|255534646|ref|YP_003095017.1| Ribosomal RNA small subunit methyltransferase E [Flavobacteriaceae
bacterium 3519-10]
gi|255340842|gb|ACU06955.1| Ribosomal RNA small subunit methyltransferase E [Flavobacteriaceae
bacterium 3519-10]
Length = 257
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 97/227 (42%), Gaps = 18/227 (7%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEG-CIQRIDRTGLDVVALEDLKLVLPQ 112
V++ +E H+ KVLR+ + + + +GKG L G I + L+V + LP
Sbjct: 38 VKINEEEQQHILKVLRMRDGEEISVTDGKGNLATGKLITEGKKVSLNV---SETHQNLPN 94
Query: 113 HTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYG 172
+ A T R ++ +EK TE+ VT L TE RK N
Sbjct: 95 FSTQLHIAIAPTKNIDRIEFFLEKATEMAVSEVTILQTEK--TERK---------NLNID 143
Query: 173 FIANSAFVYGGQ--RLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNE 230
+ + Q R H +N K + + + FVA + L + +
Sbjct: 144 KLRKQSVSASKQSLRYHFPKVNDITKFSDFIKNLD-PETTFVAHCNESLERFNLKDIQPQ 202
Query: 231 SSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
++GPEGDF+EKE+N + + G AV LG RLR ETA I + A
Sbjct: 203 KHTTFLIGPEGDFSEKEINMLADKGIKAVSLGNQRLRTETAGIFVAA 249
>gi|421614002|ref|ZP_16055071.1| Ribosomal RNA small subunit methyltransferase E [Rhodopirellula
baltica SH28]
gi|408495209|gb|EKJ99798.1| Ribosomal RNA small subunit methyltransferase E [Rhodopirellula
baltica SH28]
Length = 280
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 120/275 (43%), Gaps = 39/275 (14%)
Query: 44 IPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVAL 103
+P +Q +V++ +E H ++V+R+ DR+ELF+G G + + + + + V
Sbjct: 7 VPDLQTQAPVVQLPDEEASHASRVMRVQIGDRIELFDGCGHQSDAEVVSVSKR--ECVVR 64
Query: 104 EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE------------ 151
D + + V A G K RA ++E+ TELG V P++ E
Sbjct: 65 CDAIEAVDREPSIAVDLAIGLPKPDRAKEMIERLTELGVARVFPIVFERTQRPPKENFLD 124
Query: 152 ----LHLQS-RKIGDNGFLSCNFYYGFI-------ANSAF---------VYGGQR-LHEM 189
+ ++S ++ G N ++ F+ A+SA + QR L M
Sbjct: 125 KLRRIVIESCKQSGRNVLMTIESPIDFVSFTETLAASSATNDEEDPQPRQWSWQRVLVAM 184
Query: 190 VLNPPMKIDGLLPL-VSQSKLAFVAIAEAT--PLVTALSSSRNESSGLIIVGPEGDFTEK 246
+PP+ + P V Q+ + + L T S L ++GPEG +E
Sbjct: 185 PDSPPLSATDVEPTGVRQTGAGQTGVGQTDVGQLNTGQSGLNGRPRTLALIGPEGGLSEA 244
Query: 247 EVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
E + V+ GA ++GLG LR+ETA + A L++
Sbjct: 245 EHQRCVDVGAESIGLGRRILRIETAAAIVAARLVV 279
>gi|387824924|ref|YP_005824395.1| Ribosomal RNA small subunit methyltransferase E [Francisella cf.
novicida 3523]
gi|332184390|gb|AEE26644.1| Ribosomal RNA small subunit methyltransferase E [Francisella cf.
novicida 3523]
Length = 242
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 111/243 (45%), Gaps = 14/243 (5%)
Query: 41 RGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGL-IEGCIQRIDRTGLD 99
RG ++ I + G+ + + VLRL +D +ELFN L + I ID +
Sbjct: 5 RGFFCEISTKTTIFNISGEYYNYFKNVLRLKKSDLIELFNNSDSLQYKTKIIAIDNKNIT 64
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
+ ++ + + N++ A +K + +++K TELG ++ P++TE + K
Sbjct: 65 LEVIDKKHINNENNYITNLYQAI--IKSENFELVIQKATELGVNNIYPIITEF--TNHKF 120
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFV---AIAE 216
NGF + IA + G R+ ++ P+ I+ + + Q+ L V
Sbjct: 121 DKNGFDKKLERWHKIAIAGSEQCG-RVFIPKIHTPIDINDIQ--IPQNDLNLVLCPYTQT 177
Query: 217 ATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALL 276
V + SS N + I +GPEG F+++E++K + LG L+ ETA I +L
Sbjct: 178 KQDFVQKIKSSTNFN---IFIGPEGGFSDREMSKFHSNNFYTINLGKRILKAETAPINIL 234
Query: 277 ATL 279
+ +
Sbjct: 235 SII 237
>gi|161525920|ref|YP_001580932.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia multivorans
ATCC 17616]
gi|189349361|ref|YP_001944989.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia multivorans
ATCC 17616]
gi|160343349|gb|ABX16435.1| protein of unknown function DUF558 [Burkholderia multivorans ATCC
17616]
gi|189333383|dbj|BAG42453.1| conserved hypothetical protein [Burkholderia multivorans ATCC
17616]
Length = 254
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 100/245 (40%), Gaps = 34/245 (13%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF + + + D H +VLRL D + LF+G GG + ID+
Sbjct: 10 VPRFFVDTALRADATLALPADVARH-AQVLRLQPGDPLALFDGTGGQYRARLVEIDKRS- 67
Query: 99 DVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
AL + P + + V A G G + DW++EK ELG +V PL T +
Sbjct: 68 ---ALAQIDAFDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGV-V 123
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMV-----------LNPPMKIDGLLPLVS 205
+ G+ + G + S G R+ ++ L PP + L L
Sbjct: 124 KLSGERAEKRVAHWRGVVRASCEQCGRNRVPDVAAVRAFAAWLDGLPPPADGELRLLLSP 183
Query: 206 QSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHR 265
++ + F ++ +A P +++GPEG + E G TA+ LGP
Sbjct: 184 RASIPFASLPDAPPAAPVT----------LLIGPEGGLSPDEEAAARARGFTALSLGPRV 233
Query: 266 LRVET 270
LR ET
Sbjct: 234 LRTET 238
>gi|421855644|ref|ZP_16288020.1| hypothetical protein ACRAD_11_00600 [Acinetobacter radioresistens
DSM 6976 = NBRC 102413]
gi|403188869|dbj|GAB74221.1| hypothetical protein ACRAD_11_00600 [Acinetobacter radioresistens
DSM 6976 = NBRC 102413]
Length = 239
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 105/244 (43%), Gaps = 20/244 (8%)
Query: 44 IPRFFSQ-----GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRF+ + G V + F H KVLR D LFNG+GG E + I +
Sbjct: 1 MPRFYIEADLTVGTTVELTETVFHHWVKVLRAQIGDSATLFNGRGGEFEANLTEISKKTA 60
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTL--KGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
V ++ P G + KG R D++++K TELG ++ LLT +
Sbjct: 61 SVA----IRSSNPADRTPPFTTVLGQVMSKGDRMDYVIQKATELGVTTIQ-LLTSERCEM 115
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKI-DGLLPLVSQSKLAFVAIA 215
R D + + + + G R+ E++ PP+ + D L +S ++L
Sbjct: 116 RLKYDRDQKKLDHWQAVVIAACEQCGMNRIPEIL--PPVPLTDWLQQNLSATRLVLAPNK 173
Query: 216 EATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIAL 275
++T ++ +++GPEG +E E++ AG +G LR ETA +
Sbjct: 174 RQQNVLTDA-----QTDLALLIGPEGGLSEAEIDMANHAGFKNWCIGERILRTETAPVVA 228
Query: 276 LATL 279
L+ L
Sbjct: 229 LSIL 232
>gi|359451310|ref|ZP_09240716.1| 16S rRNA (uracil1498-N3)-methyltransferase [Pseudoalteromonas sp.
BSi20480]
gi|392537916|ref|ZP_10285053.1| 16S ribosomal RNA methyltransferase RsmE [Pseudoalteromonas marina
mano4]
gi|358042863|dbj|GAA76965.1| 16S rRNA (uracil1498-N3)-methyltransferase [Pseudoalteromonas sp.
BSi20480]
Length = 244
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 119/253 (47%), Gaps = 33/253 (13%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+P + I V ++ D H+ +VLR+ + V +FNG+GG E + I+ +
Sbjct: 3 VPHIYQASSITLNTPVSLDDDAAGHIGRVLRMKVGEHVSIFNGEGG--EYLSEIIEVSKK 60
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLK---------GGRADWLVEKCTELGAQSVTPLL 149
+VV V+PQ Q+N LK G + D+ ++K ELG +TP+
Sbjct: 61 NVV-------VMPQ--QFNPHDVESPLKIHLGQCVSRGDKMDFTIQKSVELGITEITPIF 111
Query: 150 TELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS-K 208
++ + IGD + + IA +A G R + V++PP+ I L + + K
Sbjct: 112 SQ-RCGVKLIGDR-LDKKHQQWQKIAIAAAEQSG-RNYVPVVHPPIDIKQWLEQSTNAIK 168
Query: 209 LAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRV 268
L AE + + ++ ++ +VGPEG FT++E+ + + + LGP LR
Sbjct: 169 LTLHPRAEHS--IKTITVPKDGVR--FLVGPEGGFTDEEMAQTKQQEFVDIRLGPRVLRT 224
Query: 269 ETATIALLATLML 281
ETA + +L+ L L
Sbjct: 225 ETAALTVLSALQL 237
>gi|387133625|ref|YP_006299597.1| RsmE family RNA methyltransferase [Prevotella intermedia 17]
gi|386376473|gb|AFJ09592.1| RNA methyltransferase, RsmE family [Prevotella intermedia 17]
Length = 240
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 105/228 (46%), Gaps = 21/228 (9%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQW-- 116
+E H +VLRL + D + L +G+G + + ++ L ++K LPQ W
Sbjct: 21 EEAMHAVRVLRLKSGDDIFLMDGEGTFYQAVVTLANQKH----CLYEIKQSLPQDKTWKG 76
Query: 117 NVFAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
++ A K GR +WLVEK TE+G ++ L + H RK+ L + +
Sbjct: 77 HLHLAIAPTKDIGRIEWLVEKATEIGFDEISFL--DCHFSERKV-----LRTDRIERIVV 129
Query: 176 NSAFVYGGQRLHEMVLNPPMKIDGLL-PLVSQSKLAFVAI--AEATPLVTALSSSRNESS 232
++ + ++ + ++N + + + + +K E T L+SS +
Sbjct: 130 SA--MKQSRKAWKPIVNEMVTFEQFMCKDIKGAKFICHCYNEIEKADFFTELNSSDCAND 187
Query: 233 GLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
++VGPEGDF+ EV + + +V LG RLR ETA L A +M
Sbjct: 188 ITVLVGPEGDFSIDEVRQAINNNYRSVTLGNSRLRTETA--GLSAVMM 233
>gi|374307588|ref|YP_005054019.1| RNA methyltransferase, RsmE family [Filifactor alocis ATCC 35896]
gi|291166400|gb|EFE28446.1| RNA methyltransferase, RsmE family [Filifactor alocis ATCC 35896]
Length = 247
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 105/249 (42%), Gaps = 55/249 (22%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
+E H+TKVLR S D VE+F+ G I ID + D++ LP+ ++ N+
Sbjct: 20 EEIKHITKVLRFSVGDYVEIFDSVQGEYIAKISAIDSKRIYF----DIQKELPK-SKSNI 74
Query: 119 FAAF--GTLKGGRADWLVEKCTELGAQSVTPL------------------LTELHLQSRK 158
F G KG R ++L++K TELG ++ P+ ++ L++ K
Sbjct: 75 FVTLYQGIAKGHRMEFLIQKSTELGVDTIIPVRFQRSVAKLEKDDKKIQRWNKICLEASK 134
Query: 159 IGDNGFLSC--------NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLA 210
+SC + N ++ + H + L +K
Sbjct: 135 QCKRNKISCVKNAIDFSELSSELLKNDLNLFFYEEEHNLTLKSYLK-------------- 180
Query: 211 FVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
E + L +N S IIVGPEG TE+E + +V G ++ LG LR ET
Sbjct: 181 -----EQLNRIKVL---QNGVSIGIIVGPEGGITEQEKDILVSEGIPSLSLGKRILRTET 232
Query: 271 ATIALLATL 279
++A+L+ L
Sbjct: 233 VSVAVLSML 241
>gi|402574358|ref|YP_006623701.1| RsmE family RNA methyltransferase [Desulfosporosinus meridiei DSM
13257]
gi|402255555|gb|AFQ45830.1| RNA methyltransferase, RsmE family [Desulfosporosinus meridiei DSM
13257]
Length = 245
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 102/239 (42%), Gaps = 28/239 (11%)
Query: 59 DEFW-------HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLP 111
D FW H+ +VLRLS D V ++ G G I I+ + L + +
Sbjct: 12 DVFWLRDAEREHLVRVLRLSPGDLVVGYDNTGREYTGVIVNIEDKSVTCRILSTDQPDVE 71
Query: 112 QHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGD-----NG 163
HT +V+ G KG + +W+++K TELG + PL + +H++ +K D
Sbjct: 72 AHT--SVYIVAGLSKGEKMEWVIQKGTELGMSGLIPLRAKRSIVHIEGKKAQDRVARWQK 129
Query: 164 FLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTA 223
S V+ E+ P ++P + + L +
Sbjct: 130 IASEASKQSHRVQEPEVFEVCDWKELKEQLPEDTQWIIPYEEE---------KTQRLASV 180
Query: 224 LSSSRNESSGLIIVGPEGDFTEKEVNKIVEA-GATAVGLGPHRLRVETATIALLATLML 281
L + +E II+GPEG F E EV + E A +V LGP LR ETA +A + TL+L
Sbjct: 181 LKTMSSEHPIAIIIGPEGGFEESEVAWVQENLSAQSVSLGPRILRTETAAMAAI-TLVL 238
>gi|402701104|ref|ZP_10849083.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas fragi A22]
Length = 239
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 101/216 (46%), Gaps = 10/216 (4%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +VLR++ D +++F+G G G + + + + V+ E + + +
Sbjct: 26 YIGRVLRMAEGDALQVFDGSGHEFTGRLLEVGKKRVRVLLDESFAGQI--ESPLAIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K TELG +TP+++E ++ D ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGVNEITPIMSER--CEVRLKDERAEKRLSHWRQVAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G R V++PP+ + + +++ L V + PL + R ++GPEG
Sbjct: 142 G-RSRVPVIHPPVLLSEWIK-TTEADLKLVLHPVSEPLASHAKPGRL----AFLIGPEGG 195
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
T+ E+++ +G LGP LR ETA + LA
Sbjct: 196 LTDNEIDQAQASGFQPARLGPRVLRTETAPVVALAV 231
>gi|160889128|ref|ZP_02070131.1| hypothetical protein BACUNI_01549 [Bacteroides uniformis ATCC 8492]
gi|317480687|ref|ZP_07939774.1| RNA methyltransferase [Bacteroides sp. 4_1_36]
gi|156861135|gb|EDO54566.1| RNA methyltransferase, RsmE family [Bacteroides uniformis ATCC
8492]
gi|316903194|gb|EFV25061.1| RNA methyltransferase [Bacteroides sp. 4_1_36]
Length = 232
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 103/242 (42%), Gaps = 41/242 (16%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRID-RTGLDVVALEDLKLVLPQHTQW- 116
+E H +VLRL D V L +GKG C R + T + L ++ LPQ W
Sbjct: 18 EEAAHAVRVLRLQAGDEVMLTDGKG-----CFYRAEISTATNKRCLVNILETLPQAPLWK 72
Query: 117 -NVFAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
++ A K R +W EK TE+G +T FL+C F +
Sbjct: 73 GHLHIAMAPTKNMDRTEWFAEKATEIGFDELT-----------------FLNCRFSERKV 115
Query: 175 ANSAFVYG------GQRLHEMV--LNPPMKIDGLL--PLVSQSKLAFVAIAEATPLVTAL 224
+ + Q L + LN + + P Q +A E PL+ +
Sbjct: 116 IKTERISKILVSAIKQSLKARLPQLNEMTDFNKFITQPFPGQKFIAHCYEGEK-PLLKDM 174
Query: 225 SSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSD 284
++ L+++GPEGDF+E+EV K E G + LG RLR ETA AL+A +L
Sbjct: 175 VHPGEDA--LVLIGPEGDFSEEEVRKATENGFIPISLGKSRLRTETA--ALVACHILNLQ 230
Query: 285 SQ 286
+Q
Sbjct: 231 NQ 232
>gi|421867510|ref|ZP_16299168.1| Ribosomal RNA small subunit methyltransferase E [Burkholderia
cenocepacia H111]
gi|358072448|emb|CCE50046.1| Ribosomal RNA small subunit methyltransferase E [Burkholderia
cenocepacia H111]
Length = 255
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 103/236 (43%), Gaps = 15/236 (6%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF + + + D H+ +VLRL D + LF+G GG + +D+
Sbjct: 10 VPRFFVDAALRADATLALPADVARHV-QVLRLQPGDVLALFDGTGGQYRARLVEVDKRS- 67
Query: 99 DVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
AL + P + + V A G G + DW++EK ELG +V PL T +
Sbjct: 68 ---ALVQVDSFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGV-V 123
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEM--VLNPPMKIDGLLPLVSQSKLAFVAI 214
+ G+ + G + S G R+ ++ V+ +D L + +L +
Sbjct: 124 KLSGERADKRVAHWRGVVRASCEQCGRNRVPDVAPVIGFNAWLDALPAAPADGELRLLLS 183
Query: 215 AEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
A+ +L + ++ +++GPEG + E N G TA+ LGP LR ET
Sbjct: 184 PRASIPFASLPDAPPAAAVTLLIGPEGGLSPDEENAARARGFTALSLGPRVLRTET 239
>gi|262193422|ref|YP_003264631.1| hypothetical protein [Haliangium ochraceum DSM 14365]
gi|262076769|gb|ACY12738.1| protein of unknown function DUF558 [Haliangium ochraceum DSM 14365]
Length = 250
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 102/230 (44%), Gaps = 22/230 (9%)
Query: 50 QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRID--RTGLDVVALEDLK 107
+ G V V GD+ ++ +V RL D V LF+G G + + ID R L+V E
Sbjct: 13 RAGAVEVCGDDHRYLFRVRRLRVGDAVTLFDGAGREADARVAAIDGERAQLEVA--EPRA 70
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
+V P + +V A +KG R D+ V+K ELG + P+ + + + +G +
Sbjct: 71 VVAPSPCRVSVLPAL--IKGDRMDFCVQKLVELGVHEIAPVTSARTV----VKLDGARAA 124
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLV------SQSKLAFVAIA-EATPL 220
F+ R E P +I + PL +Q+ L + A E + +
Sbjct: 125 RRRERFV---DIARAAARQCERATVP--EIAAIAPLEQALASRAQTPLKLILWARERSRM 179
Query: 221 VTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
+ + + + + VGPEG F +E+ V AG VGLG H LR ET
Sbjct: 180 LRDIVAQPLPAGVCVAVGPEGGFAPEEIEAAVAAGFEPVGLGGHVLRAET 229
>gi|386829497|ref|ZP_10116604.1| RNA methyltransferase, RsmE family [Beggiatoa alba B18LD]
gi|386430381|gb|EIJ44209.1| RNA methyltransferase, RsmE family [Beggiatoa alba B18LD]
Length = 243
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 110/241 (45%), Gaps = 14/241 (5%)
Query: 40 SRGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
SR +P S + + + +M VLRL D++ +FNG+GG + C+ + +
Sbjct: 4 SRFYLPLSLSPLTRIDLPKEVLHYMLNVLRLREGDKLRVFNGEGGEYDACLVDVGKKNAR 63
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
+ E + + + A + D+ ++K ELG ++ P++TE ++ I
Sbjct: 64 LHVGEWHTIERESPLKLTLVQAIS--RTEHMDYALQKAVELGVNTIVPIMTERSVRLDPI 121
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLL--PLVSQSKLAFVAIAEA 217
N + + ++ G RL L+ ++ L PL ++LA++ A
Sbjct: 122 TANK--RAQHWQKILISACEQSGRNRLP--TLHAVTTLENYLSEPL---NELAYILSPTA 174
Query: 218 -TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALL 276
PL L + ++ I++G EG FT EVN +AG A+ LG LR ETATI +L
Sbjct: 175 HYPLPLQLETP--PTTLRIVIGAEGGFTTTEVNTAEQAGYKAISLGSRILRTETATITIL 232
Query: 277 A 277
A
Sbjct: 233 A 233
>gi|206561729|ref|YP_002232494.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia cenocepacia
J2315]
gi|198037771|emb|CAR53715.1| conserved hypothetical protein [Burkholderia cenocepacia J2315]
Length = 246
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 103/236 (43%), Gaps = 15/236 (6%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF + + + D H+ +VLRL D + LF+G GG + +D+
Sbjct: 1 MPRFFVDAALRADATLALPADVARHV-QVLRLQPGDVLALFDGTGGQYRARLVEVDKRS- 58
Query: 99 DVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
AL + P + + V A G G + DW++EK ELG +V PL T +
Sbjct: 59 ---ALVQVDSFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGV-V 114
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEM--VLNPPMKIDGLLPLVSQSKLAFVAI 214
+ G+ + G + S G R+ ++ V+ +D L + +L +
Sbjct: 115 KLSGERADKRVAHWRGVVRASCEQCGRNRVPDVAPVIGFSAWLDALPAAPADGELRLLLS 174
Query: 215 AEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
A+ +L + ++ +++GPEG + E N G TA+ LGP LR ET
Sbjct: 175 PRASIPFASLPDAPPAAAVTLLIGPEGGLSPDEENAARARGFTALSLGPRVLRTET 230
>gi|425737413|ref|ZP_18855686.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus
massiliensis S46]
gi|425482761|gb|EKU49917.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus
massiliensis S46]
Length = 250
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 118/260 (45%), Gaps = 27/260 (10%)
Query: 27 RAFSSSSSDYANQSRGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLI 86
R F + S+D NQ RFF Q E ++ H++KV+R+ D + + +
Sbjct: 3 RYFLTESAD-LNQ------RFFIQ------EKNDIHHISKVMRMQPEDHIVITFNDEKVF 49
Query: 87 EGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVT 146
+ I I ++V +E L ++ + + + G +K + +W+++K TELGA+
Sbjct: 50 KCEIIDISNEAIEVETIEALDVMSEMPVEVTILS--GLIKADKYEWMLQKATELGAKHF- 106
Query: 147 PLLTELHLQSRKIGDN-GFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVS 205
+ TE+ K+ N + + I +A RL + + + +++
Sbjct: 107 -IGTEMERNVVKLQPNKASKKLSRWEKIIKEAA--EQSYRLSIPSIKYMSNFNEIYDIIN 163
Query: 206 QSKLAFVAIAEATPL-----VTALSSSRNESSGLIIV-GPEGDFTEKEVNKIVEAGATAV 259
Q +A E+ + AL+ ++ V GPEG F+E E+ K+ E G AV
Sbjct: 164 QYDYVIIAYEESAKRGEVSHLKALTQKFKAGDKILFVSGPEGGFSENEIEKLTEVGC-AV 222
Query: 260 GLGPHRLRVETATIALLATL 279
GLGP LR ETA + +L+ +
Sbjct: 223 GLGPRILRAETAPLYVLSAI 242
>gi|421528855|ref|ZP_15975409.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida S11]
gi|402213692|gb|EJT85035.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida S11]
Length = 207
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 97/209 (46%), Gaps = 12/209 (5%)
Query: 70 LSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGR 129
++ D V+LF+G G G + + + + V D L + +V G +G R
Sbjct: 1 MAPGDAVQLFDGSGQEYRGQLLEVGKKTVRVSL--DQALAGQADSPLHVHLGQGLSRGER 58
Query: 130 ADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEM 189
DW ++K TELGA +TP+++E ++ D ++ +A SA G R
Sbjct: 59 MDWAIQKATELGANEITPIVSERC--EVRLKDERADKRLAHWRQVAISACEQCG-RSTLP 115
Query: 190 VLNPPMKIDGLLPLVSQS-KLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEV 248
V++PP+ + L + KL +AE L+S ++ ++GPEG +E EV
Sbjct: 116 VIHPPVTLAEWLNSANADLKLVLHPVAEP------LTSHAKPATLAFLIGPEGGLSEAEV 169
Query: 249 NKIVEAGATAVGLGPHRLRVETATIALLA 277
+ AG A LGP LR ETA + L+
Sbjct: 170 EQAKAAGFHAACLGPRVLRTETAPVVALS 198
>gi|301309334|ref|ZP_07215276.1| RNA methyltransferase, RsmE family [Bacteroides sp. 20_3]
gi|423338175|ref|ZP_17315918.1| RsmE family RNA methyltransferase [Parabacteroides distasonis
CL09T03C24]
gi|300832423|gb|EFK63051.1| RNA methyltransferase, RsmE family [Bacteroides sp. 20_3]
gi|409235198|gb|EKN28018.1| RsmE family RNA methyltransferase [Parabacteroides distasonis
CL09T03C24]
Length = 232
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 90/224 (40%), Gaps = 17/224 (7%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
+E H +VLRL D + L +G+G + I R +V LE K P +N+
Sbjct: 18 EEAGHCIRVLRLGEGDEIVLTDGQGSFYKAAISRAHPKHCEVTLLESWK--QPDLWNFNL 75
Query: 119 FAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTEL--HLQSRKIGDNGFLSCNFYYGFIA 175
A K R +W VEK TE+G ++T L + + I L A
Sbjct: 76 HIAIAPTKNMDRMEWFVEKATEIGINAITCLNCRFSERKEIKPIRLEKILVSAMKQSQKA 135
Query: 176 NSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLI 235
+ G + V P DG F+A E + + + LI
Sbjct: 136 TLPALEGMTDFKKFVATP---FDG---------RKFIAHCEEGEKPLLKHTYQPGENALI 183
Query: 236 IVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
++GPEGDF+ +E+ E G + LG RLR ETA + T+
Sbjct: 184 LIGPEGDFSPEEIKLAQENGFEPISLGESRLRTETAALVACHTI 227
>gi|150008444|ref|YP_001303187.1| 16S ribosomal RNA methyltransferase RsmE [Parabacteroides
distasonis ATCC 8503]
gi|255014179|ref|ZP_05286305.1| 16S ribosomal RNA methyltransferase RsmE [Bacteroides sp. 2_1_7]
gi|256841572|ref|ZP_05547079.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|262383279|ref|ZP_06076415.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|298376306|ref|ZP_06986262.1| RNA methyltransferase, RsmE family [Bacteroides sp. 3_1_19]
gi|410103419|ref|ZP_11298342.1| RsmE family RNA methyltransferase [Parabacteroides sp. D25]
gi|423330807|ref|ZP_17308591.1| RsmE family RNA methyltransferase [Parabacteroides distasonis
CL03T12C09]
gi|149936868|gb|ABR43565.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
8503]
gi|256737415|gb|EEU50742.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|262294177|gb|EEY82109.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|298267343|gb|EFI09000.1| RNA methyltransferase, RsmE family [Bacteroides sp. 3_1_19]
gi|409232423|gb|EKN25271.1| RsmE family RNA methyltransferase [Parabacteroides distasonis
CL03T12C09]
gi|409237175|gb|EKN29976.1| RsmE family RNA methyltransferase [Parabacteroides sp. D25]
Length = 232
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 90/224 (40%), Gaps = 17/224 (7%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
+E H +VLRL D + L +G+G + I R +V LE K P +N+
Sbjct: 18 EEAGHCIRVLRLGEGDEIVLTDGQGSFYKAAISRAHPKHCEVTLLESWK--QPDLWNFNL 75
Query: 119 FAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTEL--HLQSRKIGDNGFLSCNFYYGFIA 175
A K R +W VEK TE+G ++T L + + I L A
Sbjct: 76 HIAIAPTKNMDRMEWFVEKATEIGINAITCLNCRFSERKEIKPIRLEKILVSAMKQSQKA 135
Query: 176 NSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLI 235
+ G + V P DG F+A E + + + LI
Sbjct: 136 TLPALEGMTDFKKFVATP---FDG---------RKFIAHCEEGEKPLLKHTYQPGENALI 183
Query: 236 IVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
++GPEGDF+ +E+ E G + LG RLR ETA + T+
Sbjct: 184 LIGPEGDFSPEEIKLAQENGFEPISLGESRLRTETAALVACHTI 227
>gi|32476393|ref|NP_869387.1| hypothetical protein RB10359 [Rhodopirellula baltica SH 1]
gi|32446938|emb|CAD78844.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
Length = 280
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 125/275 (45%), Gaps = 39/275 (14%)
Query: 44 IPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVAL 103
+P +Q +V++ +E H ++V+R+ T D++ELF+G G + + + + + V
Sbjct: 7 VPDLQTQVPVVQLPDEEASHASRVMRVQTGDQIELFDGCGHQADAEVVSVSKR--ECVVR 64
Query: 104 EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE------------ 151
D + + V A G K RA ++E+ TELG V P++ E
Sbjct: 65 CDAIEAVDREPSIAVDLAIGLPKPDRAKEMIERLTELGVARVFPIVFERTQRPPKENFLD 124
Query: 152 ----LHLQS-RKIGDNGFLSCNFYYGFI-------ANSAF---------VYGGQR-LHEM 189
+ ++S ++ G N ++ F+ A+SA + QR L M
Sbjct: 125 KLRRIVIESCKQSGRNVLMTIESPIDFVSFTETLAASSATNDEEDPQPRQWSWQRVLVAM 184
Query: 190 VLNPPMKIDGLLPL-VSQSKLAFVAI--AEATPLVTALSSSRNESSGLIIVGPEGDFTEK 246
+PP+ + P V Q+ A + ++A + T S + L ++GPEG +E
Sbjct: 185 PDSPPLSATDVEPTGVRQTGAAQTGVGQSDARQINTGQSGLNDRPRTLALIGPEGGLSEA 244
Query: 247 EVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
E + V+ GA ++GLG LR+ETA + A L++
Sbjct: 245 EHQRCVDVGAESIGLGRRILRIETAAAIIAARLVV 279
>gi|375309472|ref|ZP_09774753.1| hypothetical protein WG8_3278 [Paenibacillus sp. Aloe-11]
gi|375078781|gb|EHS57008.1| hypothetical protein WG8_3278 [Paenibacillus sp. Aloe-11]
Length = 254
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 110/239 (46%), Gaps = 21/239 (8%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQH 113
V V G++ H+ KV+R + D++ + +G + I++ + +E L++ H
Sbjct: 16 VIVAGEDARHIAKVMRGRSGDKIIVSDGVSREALAALDTIEQDHVTATIVELLEMTSEPH 75
Query: 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNFY 170
Q V A KG + + +++KCTE+GA P L+E + ++K G +
Sbjct: 76 VQ--VTIAQSLPKGDKMETVMQKCTEIGAAGFIPFLSERTVVQYDAKKEGKR----LERW 129
Query: 171 YGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT---------PLV 221
+ +A R+ E ++ PM LL + L + PL
Sbjct: 130 RKIVKEAAEQSHRNRIPE--ISAPMTWKELLASFTGYDLICYCYEKEQGRQLRDVIQPLA 187
Query: 222 TALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
+S+ ++ L++VGPEG FTE E + +AGA + GLG LR ETA +A LA ++
Sbjct: 188 GPWASA-DKPRVLLVVGPEGGFTEAENLEAEQAGAQSTGLGRRILRAETAGMAALACIL 245
>gi|357976491|ref|ZP_09140462.1| 16S ribosomal RNA methyltransferase RsmE [Sphingomonas sp. KC8]
Length = 285
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 96/230 (41%), Gaps = 22/230 (9%)
Query: 45 PRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PR F S G V +EG ++ V+RL D V LF+ + G + + + L
Sbjct: 47 PRLFVETPLSDGASVPIEGAAANYLGNVMRLKAGDPVRLFDDQTGEWLATVADVGKRALR 106
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
+ L W V A +K GR DW+ EK ELG + P++T R I
Sbjct: 107 LTITAQLSAREDVPDLWLVAA---PIKKGRIDWVAEKACELGVARLVPVITR-----RTI 158
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLL-PLVSQSKLAFVAIAEAT 218
D L+ + +A G R L P+K+D LL + L F A
Sbjct: 159 VDK--LNSERLRAHMIEAAEQCG--RTALPALAEPVKLDALLRDWPADRTLLFADEAGGV 214
Query: 219 PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKI-VEAGATAVGLGPHRLR 267
PL ++ S I++GPEG FT++E I GA + LGP LR
Sbjct: 215 PLAQV---AKPGSPAAILIGPEGGFTDEERAAIRAVPGAIGMSLGPRILR 261
>gi|307543622|ref|YP_003896101.1| hypothetical protein HELO_1033 [Halomonas elongata DSM 2581]
gi|307215646|emb|CBV40916.1| K09761 hypothetical protein [Halomonas elongata DSM 2581]
Length = 248
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 102/248 (41%), Gaps = 14/248 (5%)
Query: 37 ANQSRGGIPRF-----FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQ 91
A S G PR GG V + H+ +VLRL V +F+G+G E +
Sbjct: 3 AKHSMGKAPRIHVAAELQAGGDVVLPDGAARHVARVLRLGPGAPVIIFDGQGNEAEAILT 62
Query: 92 RIDRTGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE 151
R VVA + + V KG R D+ ++K ELG +TPL TE
Sbjct: 63 EAGRK--QVVARVERVAAGRGESPLAVHLGQAISKGDRMDYAIQKAVELGVAEITPLYTE 120
Query: 152 LHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAF 211
H R G+ ++ +A SA G+ V P +D L + +
Sbjct: 121 -HGDVRLKGEREAKKLA-HWQAVAASACEQCGRATLPPVYPPRSVVDWL---AERDEPLC 175
Query: 212 VAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA 271
+ + TP L + +++GPEG + EV+ +AG ++ LGP LR ETA
Sbjct: 176 LVLHPGTP--GGLDRHDDPVRAALLIGPEGGLSHAEVDAAADAGFASLTLGPRILRTETA 233
Query: 272 TIALLATL 279
+ L+ L
Sbjct: 234 PVVALSLL 241
>gi|77163661|ref|YP_342186.1| hypothetical protein Noc_0123 [Nitrosococcus oceani ATCC 19707]
gi|254435009|ref|ZP_05048516.1| conserved hypothetical protein TIGR00046 [Nitrosococcus oceani
AFC27]
gi|76881975|gb|ABA56656.1| 16S rRNA m(3)U-1498 methyltransferase [Nitrosococcus oceani ATCC
19707]
gi|207088120|gb|EDZ65392.1| conserved hypothetical protein TIGR00046 [Nitrosococcus oceani
AFC27]
Length = 243
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 113/253 (44%), Gaps = 32/253 (12%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PR + S G V ++ ++ +VLRL ++ LF+G+G + ++ I++ +
Sbjct: 3 VPRVYFPLSLSIGSSVSLDERALQYVIRVLRLRLGAQLRLFDGRGAEYQAVLETIEKRAV 62
Query: 99 DVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LH 153
V LE ++ H + ++ G +G R D+ ++K ELG + PLLTE ++
Sbjct: 63 KVRILERIE----HHVESPLHIILGQGISRGERMDYALQKAVELGVSRIIPLLTERSAVN 118
Query: 154 LQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLV-----SQSK 208
L + + + G I ++ G + PP +D PL
Sbjct: 119 LSAERAEKR----LRHWQGVIISACEQCGRNYI------PP--VDTPRPLADFLRDDHRG 166
Query: 209 LAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRV 268
LA + + + AL + + ++++GPEG + E + +A V LGP LR
Sbjct: 167 LAVLLDPRSRRPLKALPLPLD-NRLIVLIGPEGGLNKGEAKQAQQADFIGVCLGPRILRT 225
Query: 269 ETATIALLATLML 281
ETAT+A L L L
Sbjct: 226 ETATVAALTALQL 238
>gi|299148609|ref|ZP_07041671.1| RNA methyltransferase, RsmE family [Bacteroides sp. 3_1_23]
gi|298513370|gb|EFI37257.1| RNA methyltransferase, RsmE family [Bacteroides sp. 3_1_23]
Length = 232
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 97/242 (40%), Gaps = 49/242 (20%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQW-- 116
+E H +VLRLS D + L +GKG + I + ++K + Q W
Sbjct: 18 EEAQHCIRVLRLSIGDEITLTDGKGDFYKAEIT----VATNKRCFVNIKETIFQEPLWPC 73
Query: 117 NVFAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
++ A K R +W EK TE+G +T FL+C F
Sbjct: 74 HLHIAMAPTKNMDRNEWFAEKATEIGFNELT-----------------FLNCRF------ 110
Query: 176 NSAFVYGGQRLHEMV--------------LNPPMKIDGLL--PLVSQSKLAFVAIAEATP 219
+ V +R+ +++ LN ++ D + Q +A E
Sbjct: 111 SERKVIKTERIEKILVSAIKQSLKARLPKLNEMIEFDQFIRQEFKGQKFIAHCYEGEKPL 170
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
L L + L+++GPEGDF+E+EV K +E G + L RLR ETA + TL
Sbjct: 171 LKNVLKPGED---ALVLIGPEGDFSEEEVKKAIERGFVPISLSKSRLRTETAALVACHTL 227
Query: 280 ML 281
L
Sbjct: 228 NL 229
>gi|345302805|ref|YP_004824707.1| ribosomal RNA small subunit methyltransferase E [Rhodothermus
marinus SG0.5JP17-172]
gi|345112038|gb|AEN72870.1| Ribosomal RNA small subunit methyltransferase E [Rhodothermus
marinus SG0.5JP17-172]
Length = 239
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 103/247 (41%), Gaps = 30/247 (12%)
Query: 50 QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLV 109
+ G VR+ DE H +VLR D V + +G GG ++++DR G+ LE + V
Sbjct: 13 RDGWVRLPDDEAHHAVRVLRHRPGDEVIVVDGVGGWHRLRLEQVDRHGVQGRVLETRRDV 72
Query: 110 LPQHTQWNVFAAFGTLK-GGRADWLVEKCTELGAQSVTPLLT----ELHLQ---SRKIGD 161
+ + LK R + +EK ELG ++ PLLT H + +R++
Sbjct: 73 --GEPPYRLTVGLALLKQAARFETFLEKAVELGVAAIVPLLTARTERTHFRPERARRLLI 130
Query: 162 NGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLV 221
C + ++ + E++ +P + L + +
Sbjct: 131 AAMKQCGR-----SRLPLLHAPRPFAEVLHDP-------------AALRLLCHEQPDRPR 172
Query: 222 TALSS--SRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
+L R L++VGPEG FT EV + AG V LG RLR ETA + +
Sbjct: 173 HSLHELLRRPVGDALVLVGPEGGFTSDEVLQAEAAGFQTVSLGARRLRAETAALVAASAF 232
Query: 280 MLCSDSQ 286
++C D +
Sbjct: 233 LICQDHR 239
>gi|90020116|ref|YP_525943.1| PAS/PAC sensor signal transduction histidine kinase [Saccharophagus
degradans 2-40]
gi|89949716|gb|ABD79731.1| PAS/PAC sensor signal transduction histidine kinase [Saccharophagus
degradans 2-40]
Length = 241
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 106/244 (43%), Gaps = 20/244 (8%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
IPR + I + ++G ++ KVLR+ + + LFNGKGG I+ +
Sbjct: 3 IPRIYIDKPITANANLDLDGPTAHYLLKVLRMESGRELILFNGKGGEYSAVIESAGKK-- 60
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLL---TELHLQ 155
+V + A G +G R DW+++K TELG + PL +E+ L+
Sbjct: 61 NVFCKVGKHNTRESESSLQTELAIGISRGDRMDWVLQKATELGVSRIIPLFADRSEVKLK 120
Query: 156 SRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIA 215
++ ++ I SA + +L P +D L +Q++ FV
Sbjct: 121 GERLEKK-----MQHWQQILISACEQCTRNTLPTLL-PACPLDEYLA-STQAEQKFVLHH 173
Query: 216 EATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIAL 275
+ ++ + S +++GPEG T+ E+ G A+ LGP LR ETA IA
Sbjct: 174 RTHKKLRDITKPK---SAALLIGPEGGLTDNEIQNAERKGFNALALGPRILRTETAPIAA 230
Query: 276 LATL 279
L+ L
Sbjct: 231 LSIL 234
>gi|452128160|ref|ZP_21940739.1| 16S ribosomal RNA methyltransferase RsmE [Bordetella holmesii H558]
gi|451926375|gb|EMD76511.1| 16S ribosomal RNA methyltransferase RsmE [Bordetella holmesii H558]
Length = 244
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 95/222 (42%), Gaps = 16/222 (7%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQW--NVFA 120
H +VLRL D + LF+G+GG +Q + G L LP+ + +
Sbjct: 27 HAIRVLRLRDGDDIVLFDGQGGEYPARLQIEGKAGH-----AQLGEHLPREAELPGRIVL 81
Query: 121 AFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNFYYGFIANS 177
A G G + DW+VEK ELGA +V P+ + L L ++ + +
Sbjct: 82 AQGLPSGDKMDWIVEKAVELGAAAVQPIAAQRSVLQLSGPRLEKR----LTHWERVAQAA 137
Query: 178 AFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIV 237
A G RL ++ P+ + L +Q L L + +++
Sbjct: 138 AEQCGRNRLTQIAA--PLTLREWLAQPAQGPRLMCHPQAGDDLSGWLRQQPAPQALTLMI 195
Query: 238 GPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
GPEG ++ +E+ AG +V GP LR ETA +AL+A++
Sbjct: 196 GPEGGWSAEEIATAKTAGVVSVRFGPRVLRTETAALALIASI 237
>gi|338813199|ref|ZP_08625333.1| hypothetical protein ALO_13674 [Acetonema longum DSM 6540]
gi|337274806|gb|EGO63309.1| hypothetical protein ALO_13674 [Acetonema longum DSM 6540]
Length = 244
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 109/246 (44%), Gaps = 14/246 (5%)
Query: 46 RFFSQ---GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVA 102
RFF + V + G++ H+T+VLRLS D +E+ G G I D ++V
Sbjct: 3 RFFLESLLADTVYIYGEDAHHITRVLRLSPGDTIEIVGRDGEAALGSIASADPKEVEVQL 62
Query: 103 LEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELH--LQSRKIG 160
+L V A G KG + D++++K ELG + P T H +Q K
Sbjct: 63 --RARLAGSHEPSVEVILAQGLPKGDKMDFIIQKTVELGVGKIIPW-TGQHSVVQYNKDK 119
Query: 161 DNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPL 220
+ G +S + A +A R+ + P + +L ++ L + + L
Sbjct: 120 EAGRVS--RWQKIAAEAAKQCKRNRIP--AVEPVQTLADILAQADRNTLKIMFYEQERVL 175
Query: 221 -VTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
+ + S + +S L++VGPEG F+ E+N + LGP LR ETA +A + +
Sbjct: 176 GLKQVLSDQKRNSFLLLVGPEGGFSADELNLCRQHNVNVTTLGPRTLRTETAALAGITAV 235
Query: 280 ML-CSD 284
M C D
Sbjct: 236 MYECGD 241
>gi|328953124|ref|YP_004370458.1| ribosomal RNA small subunit methyltransferase E [Desulfobacca
acetoxidans DSM 11109]
gi|328453448|gb|AEB09277.1| Ribosomal RNA small subunit methyltransferase E [Desulfobacca
acetoxidans DSM 11109]
Length = 261
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 103/233 (44%), Gaps = 17/233 (7%)
Query: 46 RFFSQGGIVRVEGDEF-------WHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
RFF+ G+ + GDE H+ +V+RL+ DRVE+ +G G + E I ++ T
Sbjct: 20 RFFA--GLNQFRGDEVILSPSESHHLIRVVRLAVGDRVEVSDGCGRIFEAEILSLEPTAA 77
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
+ L +L + + + + ++ D L+ + TELG + P + L
Sbjct: 78 RLRLLNELSVGI--ESSLKITLGLALVRAEIFDSLIRQVTELGIYRLVPFTSTRSL---- 131
Query: 159 IGDNGFLSCNFY-YGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA 217
+ G+ + +A A + QRL ++PP+ L + KL F
Sbjct: 132 VRPGGWKKSRLLRWQRLAQEA-LKSSQRLILPEIDPPVDFPDALIGPEEVKLMFWEEQRQ 190
Query: 218 TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
L++ + ++GPEG FT E + +AG +GLGP RLRVET
Sbjct: 191 AHRPHDLAAWPRPRTIRALIGPEGGFTAAEADTARQAGFNLLGLGPRRLRVET 243
>gi|421543174|ref|ZP_15989271.1| 16S rRNA methyltransferase RsmE [Neisseria meningitidis NM255]
gi|402315380|gb|EJU50944.1| 16S rRNA methyltransferase RsmE [Neisseria meningitidis NM255]
Length = 241
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 114/249 (45%), Gaps = 29/249 (11%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRF+ S G V + + H+ VLR+ N+ + LFNGKG + +++
Sbjct: 1 MPRFYLPENLSVGQTVALPDNIVRHLN-VLRVRPNENITLFNGKGKAHAAQLTVLEKRRA 59
Query: 99 DVVAL-EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
+ L ED + N+ G R D+ ++K ELG ++ P+++E + R
Sbjct: 60 EAEILHED---TTDNESPLNITLIQSISSGERMDFTLQKSVELGVTAIQPVISERCI-VR 115
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA 217
G+ + + ++ G + PP +LP++ + +E+
Sbjct: 116 LDGERAAKRLARWQEIVISACEQSGRNTV------PP-----VLPIIGYREALDKMPSES 164
Query: 218 TPLVTALSSSRN-----ESSGLII--VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
T L+ +++ +R SG I+ VGPEG +TE+E + EAG AV LG LR ET
Sbjct: 165 TKLIMSINRARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGFQAVTLGKRILRTET 224
Query: 271 ATIALLATL 279
A +A LA +
Sbjct: 225 APLAALAAM 233
>gi|152998316|ref|YP_001343151.1| hypothetical protein Mmwyl1_4321 [Marinomonas sp. MWYL1]
gi|150839240|gb|ABR73216.1| protein of unknown function DUF558 [Marinomonas sp. MWYL1]
Length = 248
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 109/248 (43%), Gaps = 21/248 (8%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNG-----KGGLIEGCIQRI 93
IPR F ++ + + F H+ KVLRL ++ + +FNG K G + +
Sbjct: 3 IPRIFIDSELNENTTIPLPDSAFQHLCKVLRLKSDHPIRVFNGQEFNGKSGQFNATLCDV 62
Query: 94 DR--TGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE 151
++ + V E L P V +G R D+ ++K E G ++ PL +E
Sbjct: 63 EKRSANIHVADFEALNNEPP----IQVTIGQTLSRGERMDYAIQKSVEAGVFAIQPLFSE 118
Query: 152 LHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAF 211
K+ D ++ IA SA G+ + +V PPM + + ++
Sbjct: 119 RC--EVKLQDGRAEKRQQHWQQIAISAAEQCGRGVVPIVY-PPMGLSEWVANCNEMLKLT 175
Query: 212 VAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA 271
+ A P+ + N+ + +++GPEG TEKEV ++G A+ LGP LR ETA
Sbjct: 176 LHHHSAKPIRQYEKPANNQVA--LLIGPEGGLTEKEVQLSEKSGFNAITLGPRVLRTETA 233
Query: 272 TIALLATL 279
I L+ +
Sbjct: 234 PIVALSVI 241
>gi|333982492|ref|YP_004511702.1| Ribosomal RNA small subunit methyltransferase E [Methylomonas
methanica MC09]
gi|333806533|gb|AEF99202.1| Ribosomal RNA small subunit methyltransferase E [Methylomonas
methanica MC09]
Length = 242
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 106/234 (45%), Gaps = 19/234 (8%)
Query: 51 GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTG--LDVVALEDLKL 108
GG + ++ + ++ VLRL + + LFNG+GG C + R L++ D +
Sbjct: 15 GGRIELDEEAAHYVRSVLRLKQGEAMVLFNGQGGEYLSCFSEVSRKTVRLEIEQFSDRDV 74
Query: 109 VLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCN 168
P V G +G R DW V+K ELG +TPL TE + K+ D+
Sbjct: 75 ESP----LAVTLGVGISRGDRMDWAVQKAVELGVTQLTPLFTERCVT--KLNDDKKQQRL 128
Query: 169 FYYGFIANSAFVYGGQRLHEMVLNPPM-KIDGLLPLVSQSKLAFVAIAEATPLVT-ALSS 226
++ I A G+ P M +I L V + + V + P T +L+
Sbjct: 129 RHWQHIVQHAAEQSGR-----TRVPAMDEIAELSEWVCRQQGLRVFL---DPYATRSLAD 180
Query: 227 SRNESSGLIIV-GPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
+ E++ + ++ GPEG F+E+E AG V +G LR ETA ++ L+ +
Sbjct: 181 CQPENNQITLLSGPEGGFSERERQIAKAAGFVPVRMGARILRTETAVLSALSAV 234
>gi|406943885|gb|EKD75780.1| hypothetical protein ACD_44C00029G0003 [uncultured bacterium]
Length = 246
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 104/234 (44%), Gaps = 44/234 (18%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVV--------ALEDLKLVLPQHT 114
H+ VLR+ +D + +FNG+GG + I ++++T ++V A LK++L Q
Sbjct: 27 HVKHVLRMKKDDLLSVFNGQGGEFKAVITQVNKT-VEVCLQSFENGFAASPLKIILAQ-- 83
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
+G + D+ ++K ELG ++ PL+TE + ++ + ++ +
Sbjct: 84 --------AISRGDKMDFTLQKAVELGVHTIIPLITE--RVNVRLDEARQAKRLLHWRKV 133
Query: 175 ANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI---------AEATPLVTALS 225
SA G R +L+P I+ P + F + E PL
Sbjct: 134 MESATEQSG-RCDLPILSP---INEFSPWLETISCDFKVVLDPHAKKEKKEKIPL----- 184
Query: 226 SSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
L++VGPEG +EKE K EAG LGP LR ETA ++ +A L
Sbjct: 185 -----KELLLLVGPEGGLSEKEYKKAYEAGFVGWRLGPRILRTETAGMSAIAIL 233
>gi|410100166|ref|ZP_11295130.1| RsmE family RNA methyltransferase [Parabacteroides goldsteinii
CL02T12C30]
gi|409216293|gb|EKN09279.1| RsmE family RNA methyltransferase [Parabacteroides goldsteinii
CL02T12C30]
Length = 232
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 92/228 (40%), Gaps = 21/228 (9%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
+E H +VLRL+ D + L +GKG + I R +V LE + Q WN
Sbjct: 18 EEAGHCIRVLRLTEGDEILLTDGKGTFYKAAISRAHHKHCEVSILESWQ----QPALWNF 73
Query: 119 ---FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
A T R +W EK TE+G ++T L + R+I
Sbjct: 74 HLHIAVAPTKNMDRMEWFAEKATEIGIDAITCLNCRFS-ERREIKPARL----------- 121
Query: 176 NSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQ--SKLAFVAIAEATPLVTALSSSRNESSG 233
V ++ + L + VSQ F+A E + R +
Sbjct: 122 EKILVSAMKQSQKATLPQLEGMTDFKSFVSQPFDGRKFIAHCEDGDKTLLKQTYRPGENA 181
Query: 234 LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
L+++GPEGDF+ +E+ ++ G + LG RLR ETA + T+ +
Sbjct: 182 LVLIGPEGDFSPEEIELALQQGFEPISLGDSRLRTETAALVACHTIHV 229
>gi|330501385|ref|YP_004378254.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas mendocina
NK-01]
gi|328915671|gb|AEB56502.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas mendocina
NK-01]
Length = 239
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 104/219 (47%), Gaps = 16/219 (7%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +VLR + D V+LF+G G G + + + + V E + + + +
Sbjct: 26 YIGRVLRHAVGDAVQLFDGSGQEYLGELIEVGKKSVRVELRESIAGL--AESPLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLT---ELHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G +G R DW ++K TELGA +TP+++ E+ L+ + ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKATELGASEITPIVSTRCEVRLKDERADKR-----MAHWRQVAISAC 138
Query: 180 VYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGP 239
G+ + ++ + P+++D L + ++ L V A P V + ++GP
Sbjct: 139 EQCGRSVLPLI-HAPLELDAWLQQI-EADLKLVLHPVAEPWV----GHAPPRALAFLIGP 192
Query: 240 EGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
EG ++ EV++ AG A LGP LR ETA + L+
Sbjct: 193 EGGLSDAEVDQAKGAGFHAARLGPRVLRTETAPVVALSV 231
>gi|305666561|ref|YP_003862848.1| hypothetical protein FB2170_09846 [Maribacter sp. HTCC2170]
gi|88708830|gb|EAR01065.1| hypothetical protein FB2170_09846 [Maribacter sp. HTCC2170]
Length = 235
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 100/244 (40%), Gaps = 20/244 (8%)
Query: 45 PRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE 104
PR + +E H+ KVLR +D + + NGKG + E I +
Sbjct: 7 PRLDNSASQFVFSPEESNHIIKVLRKKEDDILLITNGKGYMFEAKIILANAKKCKAQITS 66
Query: 105 DLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDN 162
K +H + W T R +W +EK TE+G +TP++ + RKI
Sbjct: 67 TTK----KHRKMYWFHLVVAPTKSNDRFEWFLEKATEIGVDEITPIICDN--SERKIIKP 120
Query: 163 GFLSCNFYYGFIANSAFVYGGQRLHEMV--LNPPMKIDGLLPLVSQSKLAFVAIAEATPL 220
+ + SA Q L + LNP + + S+ L F+A +
Sbjct: 121 ERMEK------VLQSAM---KQSLQAYLPKLNPAVSYKEFMG-NSREGLLFIAHCDEEEK 170
Query: 221 VTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
+ + +++GPEGDF+ KE+ E G V LG +RLR ETA I T+
Sbjct: 171 LELKRRVAPDKDVTVLIGPEGDFSRKEIESAYENGYLPVSLGRNRLRTETAAIVACTTVN 230
Query: 281 LCSD 284
L ++
Sbjct: 231 LINN 234
>gi|398802216|ref|ZP_10561432.1| RNA methyltransferase, RsmE family [Polaromonas sp. CF318]
gi|398100685|gb|EJL90918.1| RNA methyltransferase, RsmE family [Polaromonas sp. CF318]
Length = 251
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 109/244 (44%), Gaps = 23/244 (9%)
Query: 51 GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKG-------GLIEGCIQRIDRTGLDVVAL 103
G V++ D H+ +VLRL D + LFNG+G G E + R+ R+ ++V
Sbjct: 14 GTTVQLPPDAARHV-QVLRLQPGDALSLFNGRGDGLPGSEGEFEATVARMGRSEVEVT-- 70
Query: 104 EDLKLVLPQHTQWN--VFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGD 161
+ P + + A R DWLVEK ELGA S+ PL++E + K G+
Sbjct: 71 --IGAYTPTAREAGRAIHLAVVMPANERMDWLVEKAAELGAASIQPLMSERSVLRLK-GE 127
Query: 162 NGFLSCNFYYGFIANSAFVYGGQR---LHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT 218
+ G + G R +H+ V + + G + ++ +++ E +
Sbjct: 128 RADKKIAHWRGVAVAACEQCGRSRVPLIHD-VASLADWLKGTVNAAAEGSRLLLSLREGS 186
Query: 219 -PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
PL A+ S + + GPEG + E + AG + V LGP LR ETA +A L+
Sbjct: 187 LPLAQAVPGS---GALTFLSGPEGGLSPTEEAAAIAAGFSPVTLGPRVLRAETAPLACLS 243
Query: 278 TLML 281
L L
Sbjct: 244 LLTL 247
>gi|445495200|ref|ZP_21462244.1| ribosomal RNA small subunit methyltransferase E [Janthinobacterium
sp. HH01]
gi|444791361|gb|ELX12908.1| ribosomal RNA small subunit methyltransferase E [Janthinobacterium
sp. HH01]
Length = 241
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 101/221 (45%), Gaps = 14/221 (6%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQ--WNVFA 120
H +VLRL+ + V LFNG+GG + I + + V ++K P+ + + +
Sbjct: 24 HHIQVLRLAQGELVTLFNGEGGEYGATLSEIGKRHVSV----EIKTHQPREVELPFGITL 79
Query: 121 AFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFV 180
A + + DW++EK ELG V PL + + R + + G IA+++
Sbjct: 80 AQALPEASKMDWIIEKAIELGVSGVQPLAAQRCV-VRLSAERAEKKMAHWQGIIASASEQ 138
Query: 181 YGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLI--IVG 238
G RL ++ + ++Q + I + +R++S + ++G
Sbjct: 139 SGRNRLAQLA-----PLQDYKQWITQQDMHRRIILTPRAEQSLADWARHQSPQAVTLVIG 193
Query: 239 PEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
PEG ++ E + ++ GA + +GP LR ETA ++ +A L
Sbjct: 194 PEGGLSDAEESLAIQHGALPLAMGPRILRTETAGLSAVAVL 234
>gi|333909754|ref|YP_004483340.1| ribosomal RNA small subunit methyltransferase E [Marinomonas
posidonica IVIA-Po-181]
gi|333479760|gb|AEF56421.1| Ribosomal RNA small subunit methyltransferase E [Marinomonas
posidonica IVIA-Po-181]
Length = 244
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 106/243 (43%), Gaps = 16/243 (6%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDR--T 96
IPR F S+ + + F H+ KVLRL + + +FNG GG + +++
Sbjct: 3 IPRIFIDIELSENATIALPDTSFQHLCKVLRLKSGHPIRVFNGLGGQFHATLCDVEKRTA 62
Query: 97 GLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
+ + A E L + V +G R D+ ++K E G ++ PLL+E
Sbjct: 63 SIAIGAFEALN----NESAVKVTIGQTLSRGERMDYAIQKSVEAGVFAIQPLLSER--CE 116
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAE 216
K+ D ++ +A SA G+ + +V +PP+++ + + L F
Sbjct: 117 VKLEDKRMQKRLSHWQQVATSAAEQCGRGIVPIV-HPPLELTEWVGDCN-DMLKFTLHHH 174
Query: 217 ATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALL 276
+ + ++ L+I GPEG TE EV + G + LGP LR ETA + L
Sbjct: 175 SAKPIKQFDLPTHKHIALLI-GPEGGLTENEVQHSEKQGFNPITLGPRVLRTETAPVVAL 233
Query: 277 ATL 279
+ +
Sbjct: 234 SVI 236
>gi|75676748|ref|YP_319169.1| 16S ribosomal RNA methyltransferase RsmE [Nitrobacter winogradskyi
Nb-255]
gi|74421618|gb|ABA05817.1| Conserved hypothetical protein 46 [Nitrobacter winogradskyi Nb-255]
Length = 257
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 112/249 (44%), Gaps = 36/249 (14%)
Query: 45 PRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PR + + G V + ++ ++ VLRL T V +FNG+ G I R
Sbjct: 11 PRLYVDAPLAAGNRVPLNRNQGNYLGNVLRLGTGTNVLVFNGRDGEWRAAISGRKRP--- 67
Query: 100 VVALEDLKLVLPQHTQ---WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
E L++V Q +V AF LK R D++V+K E+GA ++ P+LT
Sbjct: 68 ----EHLEIVAATRKQDHLRDVHYAFAPLKHARLDYMVQKAVEMGASALQPVLTRFTQVG 123
Query: 157 RKIGDN---GFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFV- 212
R G+ + G ++ +A + P ++D L + +L
Sbjct: 124 RVNGERMRANVIEAAEQCGILSLAA------------VEEPAQLDRWLGRRAGERLLVFC 171
Query: 213 --AIAEATPLVTALSSSRNESSGL-IIVGPEGDFTEKEV-NKIVEAGATAVGLGPHRLRV 268
A + A P V AL + R+ + G+ ++VGPEG F + E N + + + LGP LR
Sbjct: 172 DEAASTANP-VRALETVRSVARGIDVLVGPEGGFADNERENLLNQPNILRLSLGPRILRA 230
Query: 269 ETATIALLA 277
+TA +A+LA
Sbjct: 231 DTAAVAVLA 239
>gi|421559845|ref|ZP_16005712.1| 16S rRNA methyltransferase RsmE [Neisseria meningitidis 92045]
gi|421564014|ref|ZP_16009825.1| 16S rRNA methyltransferase RsmE [Neisseria meningitidis NM2795]
gi|421907982|ref|ZP_16337844.1| Ribosomal RNA small subunit methyltransferase E [Neisseria
meningitidis alpha704]
gi|393290947|emb|CCI73856.1| Ribosomal RNA small subunit methyltransferase E [Neisseria
meningitidis alpha704]
gi|402334411|gb|EJU69699.1| 16S rRNA methyltransferase RsmE [Neisseria meningitidis 92045]
gi|402339233|gb|EJU74450.1| 16S rRNA methyltransferase RsmE [Neisseria meningitidis NM2795]
Length = 241
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 114/249 (45%), Gaps = 29/249 (11%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRF+ S G V + + H+ VLR+ N+ + LF+GKG + +++
Sbjct: 1 MPRFYLPENLSVGQTVALPDNIVRHLN-VLRVRPNENITLFDGKGKAHAARLSFLEKRRA 59
Query: 99 DVVAL-EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
+ L ED + N+ G R D+ ++K ELG ++ P+++E + R
Sbjct: 60 EAEILHED---TTDNESSLNIMLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCI-VR 115
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA 217
G+ + + ++ G + PP +LP++ + +E+
Sbjct: 116 LDGERAAKRLARWQEIVISACEQSGRNTV------PP-----VLPIIGYREALDKMPSES 164
Query: 218 TPLVTALSSSRN-----ESSGLII--VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
T L+ +++ +R SG I+ VGPEG +TE+E + EAG AV LG LR ET
Sbjct: 165 TKLIMSINRARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGFQAVTLGKRILRTET 224
Query: 271 ATIALLATL 279
A +A LA +
Sbjct: 225 APLAALAAM 233
>gi|423248979|ref|ZP_17229995.1| RsmE family RNA methyltransferase [Bacteroides fragilis CL03T00C08]
gi|423256711|ref|ZP_17237639.1| RsmE family RNA methyltransferase [Bacteroides fragilis CL03T12C07]
gi|392648710|gb|EIY42398.1| RsmE family RNA methyltransferase [Bacteroides fragilis CL03T12C07]
gi|392656526|gb|EIY50164.1| RsmE family RNA methyltransferase [Bacteroides fragilis CL03T00C08]
Length = 229
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 99/241 (41%), Gaps = 47/241 (19%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWN- 117
+E H +VLRL+ D + L +GKG I L ++K + Q W+
Sbjct: 18 EEAQHCVRVLRLTAGDEISLTDGKGNFYRAEIS----VATHKRCLVNIKETIYQEPLWDG 73
Query: 118 --VFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
A T R +W EK TE+G +T FL+C F
Sbjct: 74 HLHIAMAPTKNMDRNEWFAEKATEIGFDELT-----------------FLNCRF------ 110
Query: 176 NSAFVYGGQRLHEMVLNP-PMKIDGLLPLVSQ--------------SKLAFVAIAEATPL 220
+ V +R+ +++++ + LP +++ K PL
Sbjct: 111 SERKVIKTERIEKILVSAIKQSLKARLPRLNEMTDFCTFIEKDFKGQKFIAHCYEGKKPL 170
Query: 221 VTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
+ + + ++ L+++GPEGDF+E+EV K +E G + LG RLR ETA + T+
Sbjct: 171 LKDVLTKGEDA--LVLIGPEGDFSEEEVKKAIEKGFVPISLGKSRLRTETAALVACHTMN 228
Query: 281 L 281
+
Sbjct: 229 M 229
>gi|326319528|ref|YP_004237200.1| ribosomal RNA small subunit methyltransferase E [Acidovorax avenae
subsp. avenae ATCC 19860]
gi|323376364|gb|ADX48633.1| Ribosomal RNA small subunit methyltransferase E [Acidovorax avenae
subsp. avenae ATCC 19860]
Length = 240
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 109/250 (43%), Gaps = 22/250 (8%)
Query: 44 IPRF-----FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
IPRF S G + + H+ +VLRL D + LF+G+GG + R+ R+
Sbjct: 3 IPRFHCPEPLSSGAALALPPAAARHV-QVLRLQPGDAITLFDGRGGEYAATVARMGRS-- 59
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
DV L + + +V G R DWLVEK TELG + P+ +R
Sbjct: 60 DVEVLVGAHDPVEREAGRSVHLVVGMPANERMDWLVEKATELGVARIQPVAA-----ARS 114
Query: 159 I----GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI 214
+ G+ + A + G R+ ++ P+ LP + +++
Sbjct: 115 VLKLSGERALKRQAHWQAIAAAACEQCGRNRVPQVEAPVPLADWLRLPPAPDAARLVLSL 174
Query: 215 AEAT-PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
E + PL A +S+ + ++ GPEG E + +E G LGP LR ETA++
Sbjct: 175 REGSRPLHDAAASA---ACVQVLHGPEGGLAPHEEDLALERGFLPASLGPRVLRAETASV 231
Query: 274 ALLATLMLCS 283
A L +L+ C+
Sbjct: 232 AAL-SLLACA 240
>gi|254475767|ref|ZP_05089153.1| conserved hypothetical protein TIGR00046 [Ruegeria sp. R11]
gi|214030010|gb|EEB70845.1| conserved hypothetical protein TIGR00046 [Ruegeria sp. R11]
Length = 242
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 103/229 (44%), Gaps = 16/229 (6%)
Query: 51 GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRI-DRTGLDVVALEDLKLV 109
G V ++ D+ ++ V+R + +V LFNG+ G I R GL V + L+
Sbjct: 16 GQSVPLDRDQAHYLFGVMRQAVGGQVSLFNGRDGEWRAEIAEAGKRNGLLVCQEQSRPLM 75
Query: 110 LPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNF 169
LP +++ F +K R D++VEK E+GA + P+ T+ R D
Sbjct: 76 LPP----DLWLLFAPIKKARTDFIVEKAAEMGAARILPVQTDFTNSDRIRQDR------- 124
Query: 170 YYGFIANSAFVYGGQRLHEMV-LNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSR 228
+A GG + E+ L ++ P + +L F AE +T ++
Sbjct: 125 LQAHAVEAAEQCGGTYVPEVAELQKLSRVLDQWP--QERQLMFCDEAEVGTALTLAAADH 182
Query: 229 NESSGLIIVGPEGDFTEKEVNKIVE-AGATAVGLGPHRLRVETATIALL 276
++ I++GPEG F+E E ++ + V LGP LR +TA +A L
Sbjct: 183 AKAPWAIVIGPEGGFSEAERKRLHGLPQSHVVSLGPRILRADTAAVAAL 231
>gi|257416411|ref|ZP_05593405.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
gi|257158239|gb|EEU88199.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
Length = 250
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 109/247 (44%), Gaps = 29/247 (11%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVEL-FNGKGGLIEGCIQRIDRTGL--DVVALE 104
+ + + +V + + H+ +V+R++ NDR L F K ++ ++ ID T + ++ E
Sbjct: 10 YQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVE-IDSTSVYFKEISKE 68
Query: 105 DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSV------TPLLTELHLQSRK 158
++ LP V A G KG + +W+V+K TELG T ++ H + R
Sbjct: 69 EMDKELP----IEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDH-KKRA 123
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA- 217
+ IA A R ++ K ++ VA E+
Sbjct: 124 AKEKRLQK-------IATEA-AEQSHRQQTPTVSLVKKTQEIIAQFDSYDTVLVAYEESA 175
Query: 218 -----TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
+ L LS+ + + ++ GPEG F +E+ + ++AGA GLGP LR ETA
Sbjct: 176 KQGEKSQLAQVLSTCQPGARLCVLFGPEGGFAPQEIEQFLQAGAKLCGLGPRILRAETAP 235
Query: 273 IALLATL 279
+ LL+ +
Sbjct: 236 LYLLSAV 242
>gi|298209191|ref|YP_003717370.1| hypothetical protein CA2559_13143 [Croceibacter atlanticus
HTCC2559]
gi|83849118|gb|EAP86987.1| hypothetical protein CA2559_13143 [Croceibacter atlanticus
HTCC2559]
Length = 235
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 104/230 (45%), Gaps = 30/230 (13%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQH 113
V E DE H+ KVLR D + + NGKG L I D V + + K Q
Sbjct: 16 VHFERDESKHIVKVLRKKAGDTLHVTNGKGWLFTVEIIS-DNHNKCVGVITEKKYQESQQ 74
Query: 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGF 173
+V A T R +W +EK TE+G +TP+L + H + + I + F
Sbjct: 75 LYLHVLIA-PTKMNDRMEWFLEKATEIGISEITPILCD-HSERKTIKTDRFER------- 125
Query: 174 IANSAFVYGGQRLHEMVLNPPMKIDGLLP---LVSQS--KLAFVAIAEAT----PLVTAL 224
+ SA Q L+ P K++ L P ++ Q+ FVA E P+ +
Sbjct: 126 VLQSAMKQSLQ------LHLP-KLNALTPFSEVIGQNIEGQKFVAHCENDKKRLPMQNEI 178
Query: 225 SSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274
+S+R I++GPEGDF+ +E+ + ++ V LG RLR ETA I
Sbjct: 179 TSNR----LTILIGPEGDFSLEEIQQALDYNWLPVTLGNTRLRTETAGIV 224
>gi|339010558|ref|ZP_08643128.1| ribosomal RNA small subunit methyltransferase E [Brevibacillus
laterosporus LMG 15441]
gi|338772713|gb|EGP32246.1| ribosomal RNA small subunit methyltransferase E [Brevibacillus
laterosporus LMG 15441]
Length = 243
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 106/233 (45%), Gaps = 17/233 (7%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQH 113
V + GD+ H+ KV+R D + + +G+G +++ + ++ + +E + +
Sbjct: 16 VVITGDDVHHIVKVMRTEIGDHILVSDGRGRVVKARLSALEPKEVRAEIVEHI----TKQ 71
Query: 114 TQWNVFAAFGT--LKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCN 168
T+ V G KG + +W+++K TELGA S P +E + L ++K
Sbjct: 72 TELPVSVTIGQGLPKGDKLEWILQKGTELGATSFVPFQSERTIVKLDAKKEAKK----LE 127
Query: 169 FYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI--AEATPLVTALSS 226
+ + +A L E++ P+ ++ A +A + L LS+
Sbjct: 128 RWSKIVKEAAEQSHRAYLPEVL--TPLSFKQVVEHAKSYTTAVIAYEKEDTKRLGEVLSN 185
Query: 227 SRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
S +++GPEG F+E E+ E G +V LGP LR ETA+ LLA +
Sbjct: 186 LSVGDSLFVMIGPEGGFSESEIQYAEENGIHSVSLGPRILRTETASQYLLAAV 238
>gi|311747456|ref|ZP_07721241.1| RNA methyltransferase, RsmE family [Algoriphagus sp. PR1]
gi|126574815|gb|EAZ79186.1| RNA methyltransferase, RsmE family [Algoriphagus sp. PR1]
Length = 234
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 104/231 (45%), Gaps = 24/231 (10%)
Query: 60 EFWHMTKVLRLSTNDRVELFNGKGGLIEGCI--QRIDRTGLDVVALEDLKLVLPQHTQWN 117
E H+T+VLR D + + +GKG + E + ++ L +++ E + P +
Sbjct: 20 ESKHLTRVLRKREGDIIHVTDGKGSIYECKLVDSNPKKSILQIISSEKV----PADDYYI 75
Query: 118 VFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELH-----LQSRKIGDNGFLSCNFYYG 172
A T R +W++EK TE+G +T LL+ ++ L++ ++ +C
Sbjct: 76 HLAIAPTKSPDRMEWMIEKITEIGFHELT-LLSSMNSERSFLKTERLHKKMISACKQSLK 134
Query: 173 FIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESS 232
F ++ + L E N + F+A + + ++ +++
Sbjct: 135 F--HTPKINQTTDLKEFFNNSDF----------EDFQKFIAYVDENHDHHLMDVAKPQAN 182
Query: 233 GLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCS 283
LI++GPEGDF+ +E+ K E V LG RLR ETA +A + L + +
Sbjct: 183 YLILIGPEGDFSPQEIEKAFEFNFKPVSLGKSRLRTETAGLAAVQMLQVLN 233
>gi|87121181|ref|ZP_01077072.1| hypothetical protein MED121_11304 [Marinomonas sp. MED121]
gi|86163673|gb|EAQ64947.1| hypothetical protein MED121_11304 [Marinomonas sp. MED121]
Length = 244
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 107/248 (43%), Gaps = 22/248 (8%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
IPR + + + + F H+ KVLRL + + LFNG+GG + + +++
Sbjct: 3 IPRIYVDLPLQESSVFDLPQASFQHVCKVLRLKNDYSLILFNGQGGQYQAKLINVEKRSA 62
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQ 155
V L L + V +G R D+ ++K E G + PL +E + L
Sbjct: 63 QVEVLN--YQALENESPIKVTLGQTLSRGERMDYAIQKAVEAGVHRIQPLFSERCEVKLN 120
Query: 156 SRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSK--LAFVA 213
+ ++ D ++ IA SA G+ VL+P LL S K L
Sbjct: 121 TERL-DKKIQ----HWQQIAISAAEQSGRGHVPEVLSPI----NLLDWTSNCKDMLKITM 171
Query: 214 IAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
+ ++ +S +++ +++GPEG TE EV ++ G V LG LR ETA +
Sbjct: 172 HHHSAKPISEMSEPEDKAVS-VLIGPEGGLTESEVEASIQHGFQPVALGSRVLRTETAPV 230
Query: 274 ALLATLML 281
+L + L
Sbjct: 231 VILTCINL 238
>gi|119899122|ref|YP_934335.1| 16S ribosomal RNA methyltransferase RsmE [Azoarcus sp. BH72]
gi|119671535|emb|CAL95448.1| conserved hypothetical protein [Azoarcus sp. BH72]
Length = 243
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 95/217 (43%), Gaps = 6/217 (2%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
H T+VLR+ + + LF+G G E + + R G AL + + + ++
Sbjct: 26 HATRVLRMRDGEPIVLFDGSGAEAEATL--VLR-GKSAAALISAYREVDRESPLDLVLVQ 82
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G + DW+V+K ELGA++V P+ E + R G+ + + G
Sbjct: 83 ALATGDKMDWIVQKAVELGARAVQPIQAERSVL-RLAGERATRRREHWQQVAVGACEQSG 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
R+ E+ + + L + + + + + R + ++VGPEG
Sbjct: 142 RNRIPEV--GEILSLQAYLAAAREDRATVRCVLDPAAAQGLSALPRPAGALHLLVGPEGG 199
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
+++ E+ A T VGLGP LR ETA +A+LA L
Sbjct: 200 WSDDELAACAAAHCTPVGLGPRVLRTETAGLAMLAAL 236
>gi|421873925|ref|ZP_16305534.1| ribosomal RNA small subunit methyltransferase E [Brevibacillus
laterosporus GI-9]
gi|372457036|emb|CCF15083.1| ribosomal RNA small subunit methyltransferase E [Brevibacillus
laterosporus GI-9]
Length = 243
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 106/233 (45%), Gaps = 17/233 (7%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQH 113
V + GD+ H+ KV+R D + + +G+G +++ + ++ + +E + +
Sbjct: 16 VVITGDDVHHIVKVMRTEIGDHILVSDGRGRVVKARLSALEPKEVRAEIVEHI----TKQ 71
Query: 114 TQWNVFAAFGT--LKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCN 168
T+ V G KG + +W+++K TELGA S P +E + L ++K
Sbjct: 72 TELPVSVTIGQGLPKGDKLEWILQKGTELGATSFVPFQSERTIVKLDAKKEAKK----LE 127
Query: 169 FYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI--AEATPLVTALSS 226
+ + +A L E++ P+ ++ A +A + L LS+
Sbjct: 128 RWSKIVKEAAEQSHRAYLPEVL--TPLSFKQVVEHAKSYTTAVIAYEKEDTKRLGEVLSN 185
Query: 227 SRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
S +++GPEG F+E E+ E G +V LGP LR ETA+ LLA +
Sbjct: 186 LSVGDSLFVMIGPEGGFSESEIQYAEENGIHSVSLGPRILRTETASQYLLAAV 238
>gi|147677216|ref|YP_001211431.1| 16S ribosomal RNA methyltransferase RsmE [Pelotomaculum
thermopropionicum SI]
gi|146273313|dbj|BAF59062.1| Uncharacterized protein conserved in bacteria [Pelotomaculum
thermopropionicum SI]
Length = 249
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 108/252 (42%), Gaps = 28/252 (11%)
Query: 44 IPRFFS-----QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF + G + + G + H+T+VLRL D + + +G+G E I++ +
Sbjct: 1 MPRFFVSPEQIKDGRIIITGPDVVHITRVLRLGRGDCLTVLDGRGRSYEAVIEKAGAAEV 60
Query: 99 DVVA--------LEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLT 150
VA L +K+ L Q G +G + D++V+K TELG + PL+
Sbjct: 61 VCVAGSVTAAGGLPAVKVTLVQ----------GIPRGDKMDFIVQKGTELGMHRLIPLIC 110
Query: 151 ELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLA 210
+ + GD F + ++ +R ++ P D +L + A
Sbjct: 111 RRSVVKLE-GDKSFRRLERWRRIALEASKQC--RRPDVPEVDAPAGWDRVLAGMPPEAAA 167
Query: 211 FVAIAE--ATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRV 268
+ E L L S + + +GPEG F EV+K G V LGP LR
Sbjct: 168 LIPWEEEDGETLKDFLRRSLPKEEVYVFIGPEGGFDPGEVDKARAVGVRPVTLGPRILRT 227
Query: 269 ETATIALLATLM 280
ETA +A+L ++
Sbjct: 228 ETAGLAVLVMVL 239
>gi|167564119|ref|ZP_02357035.1| hypothetical protein BoklE_16297 [Burkholderia oklahomensis EO147]
Length = 253
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 103/249 (41%), Gaps = 15/249 (6%)
Query: 40 SRGGIPRFFSQG-----GIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRID 94
S IPRFF + + D H+ +VLRL+ D V LFNG GG + +D
Sbjct: 4 STSAIPRFFVDAELQSDATLALPADVARHV-QVLRLAAGDAVTLFNGAGGQYRAEVVELD 62
Query: 95 RTGLDVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTEL 152
+ AL + P + + + G G + DWL+EK ELGA ++ PL T
Sbjct: 63 KR----AALVRIGAFTPADVEAPYRITLVQGIAGGDKMDWLIEKAVELGAAAIAPLSTAR 118
Query: 153 HLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEM--VLNPPMKIDGLLPLVSQSKLA 210
+ R G+ + + S G R+ ++ V + + L + +L
Sbjct: 119 GV-VRLSGERAQKRVAHWQAVVRASCEQCGRNRVPDVAPVRDIHAWLAALPAAPAPDELR 177
Query: 211 FVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
+ A+ L +++GPEG E E G ++ LGP LR ET
Sbjct: 178 LMLSPRASVGFADLPGMPPAGGVTLLIGPEGGLAPDEEEAARERGFASILLGPRVLRTET 237
Query: 271 ATIALLATL 279
A IA+LA L
Sbjct: 238 AGIAMLAAL 246
>gi|114567095|ref|YP_754249.1| hypothetical protein Swol_1575 [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114338030|gb|ABI68878.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 248
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 108/252 (42%), Gaps = 26/252 (10%)
Query: 44 IPRFFS-----QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF +G V ++ ++ H+ KVLRL + D V++F+G G + +Q + L
Sbjct: 1 MPRFFVSADNIKGNSVLIDEEQTRHIEKVLRLKSGDIVKVFDGNGNEYQVRLQEKKQKIL 60
Query: 99 DVVAL------EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTEL 152
L EDL + N+ G + + D++++K ELG +S+ PL +E
Sbjct: 61 QAEILAQETTAEDLAI--------NLTLVQGIARSEKMDFIIQKAVELGVRSLIPLQSE- 111
Query: 153 HLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFV 212
H +R + + IA A G R H + P + L+ +
Sbjct: 112 HSVARFDKEKEGKKIKRWQK-IAQEACKQCG-RNHIPEVKPILDFPALMAQIGDKPALLC 169
Query: 213 AIAEATPLVTALSSSRNE---SSGL-IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRV 268
E L + E + GL +I+GPEG F+ EV G GLGP LR
Sbjct: 170 YEQEREAYFRTLLREQRENFCTQGLFLIIGPEGGFSPAEVEIARRQGWFIAGLGPRTLRT 229
Query: 269 ETATIALLATLM 280
ETA++ +M
Sbjct: 230 ETASLLACGIIM 241
>gi|423317017|ref|ZP_17294922.1| RsmE family RNA methyltransferase [Bergeyella zoohelcum ATCC 43767]
gi|405581840|gb|EKB55848.1| RsmE family RNA methyltransferase [Bergeyella zoohelcum ATCC 43767]
Length = 231
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 96/221 (43%), Gaps = 17/221 (7%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
DE H+TKVLR+ + L +G+G + G + I ++V +E L + Q ++
Sbjct: 17 DEVQHITKVLRIKEGTVLHLTDGQGNSVRGELT-IQGKKANLVHVEHLPKLDKSPFQLHI 75
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSA 178
A T R ++ +EK E+G +T LT+ RK N + A
Sbjct: 76 AIA-PTKNIDRMEFFLEKAVEMGVDEITFFLTDN--SERK---------NINLERLEKQA 123
Query: 179 FVYGGQ--RLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLII 236
Q R++ +NP K+ + + S+ FVA L+ +
Sbjct: 124 IAASKQSLRMYFPKINPLTKLSDFIK--NHSENIFVAHCNERFERVLLTEFHFNEKNTFL 181
Query: 237 VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
VGPEGDF+ +E+ + E AV LG RLR ETA I L A
Sbjct: 182 VGPEGDFSPREIEMLSEKNIKAVSLGTQRLRTETAGIFLSA 222
>gi|120613393|ref|YP_973071.1| 16S ribosomal RNA methyltransferase RsmE [Acidovorax citrulli
AAC00-1]
gi|120591857|gb|ABM35297.1| protein of unknown function DUF558 [Acidovorax citrulli AAC00-1]
Length = 240
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 110/247 (44%), Gaps = 16/247 (6%)
Query: 44 IPRF-----FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
IPRF S G + + H+ +VLRL D + LF+G+GG + R+ R+
Sbjct: 3 IPRFHCPEPLSSGAALALPPAAARHV-QVLRLQPGDAITLFDGRGGEYAATVARMGRS-- 59
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
DV L D + + +V G R DWLVEK TELG + P+ + K
Sbjct: 60 DVEVLVDAHDPVEREAGRSVHLVVGMPANERMDWLVEKATELGVARIQPVAAARSVL--K 117
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGL-LPLVSQSKLAFVAIAEA 217
+ L ++ IA +A G+ V P D L LP + +++ E
Sbjct: 118 LSGERALKRQAHWQAIAAAACEQCGRNRVPRVEAPVPLADWLRLPPAPGAARLVLSLREG 177
Query: 218 T-PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALL 276
+ PL A + + + ++ GPEG E + +E G LGP LR ETA++A L
Sbjct: 178 SRPLHDAAAGA---ACVQVLHGPEGGLAPHEEDLALERGFLPASLGPRVLRAETASVAAL 234
Query: 277 ATLMLCS 283
+L+ C+
Sbjct: 235 -SLLACA 240
>gi|429463206|ref|YP_007184669.1| 16S rRNA (uracil1498-N3)-methyltransferase [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451811262|ref|YP_007447717.1| ribosomal RNA small subunit methyltransferase E [Candidatus
Kinetoplastibacterium crithidii TCC036E]
gi|429338720|gb|AFZ83143.1| 16S rRNA (uracil1498-N3)-methyltransferase [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451776420|gb|AGF47419.1| ribosomal RNA small subunit methyltransferase E [Candidatus
Kinetoplastibacterium crithidii TCC036E]
Length = 246
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 104/246 (42%), Gaps = 20/246 (8%)
Query: 45 PRFFSQGG----IVRVEGDEFWHMTK-VLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL- 98
PRFF + I + E H K VLRL ND + LFNGK G I + +
Sbjct: 4 PRFFLESNLSPDINVLLPKEITHYAKQVLRLQNNDDIILFNGKNGEYNATITFVKESAYA 63
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQ 155
+++ ++ L Q ++ + D ++EK ELG Q + PL T + L
Sbjct: 64 KILSFNSKEIEL----QGSITLVQSLTTNNKMDLIIEKAVELGVQKIIPLKTNRSIVQLT 119
Query: 156 SRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIA 215
+ K+ + + I +++ G +L M + P+ D L +S F
Sbjct: 120 NEKLQN----KIRHWEKIIRSASAQCGRNQL--MAIENPISFDRYLASISNQTHLFCHPI 173
Query: 216 EATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATA-VGLGPHRLRVETATIA 274
+ L L + N I++GPEG +TE+E + + V G LR ETA I
Sbjct: 174 HSQNLTEVLKTQINTKKLSIMIGPEGGWTEEECAQARKIHDIKFVNFGNRILRTETAGIT 233
Query: 275 LLATLM 280
++A ++
Sbjct: 234 IVAAVI 239
>gi|379012485|ref|YP_005270297.1| hypothetical protein Awo_c26550 [Acetobacterium woodii DSM 1030]
gi|375303274|gb|AFA49408.1| hypothetical protein Awo_c26550 [Acetobacterium woodii DSM 1030]
Length = 251
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 114/250 (45%), Gaps = 24/250 (9%)
Query: 46 RFFSQ-----GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV 100
RFF + G V + G++F H+TKVLRL ND +E+ +G+G I+ Q + T D
Sbjct: 3 RFFVELNQISGDTVVISGEDFKHITKVLRLGNNDVIEVCDGQG--ID--YQVVLSTPGDQ 58
Query: 101 VALEDLKLVLP---QHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
+K P ++ +V G KG + + +++KC ELG + P ++ +
Sbjct: 59 RVGGVIKNRYPSEGENADLSVTLFQGLPKGTKMEVIIQKCVELGVTEIVPFSSQRAITQI 118
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA 217
K + + + IA A + + V NP I+ LL + + F+A +
Sbjct: 119 KDKQDKKIE---RWQRIAYEAAKQSKRGIVPAVKNPCSLIN-LLAAKAHYDVFFLAYEDE 174
Query: 218 TP--LVTALSSSRNESSGL------IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVE 269
L AL + + ++ +I+GPEG F +EV AG V LG LR E
Sbjct: 175 QKQSLKMALDTFKKQNDVNKKLKIGVIIGPEGGFDPQEVETCQAAGVVCVSLGKRILRTE 234
Query: 270 TATIALLATL 279
TA + +L+ L
Sbjct: 235 TAGMVVLSQL 244
>gi|385340773|ref|YP_005894645.1| hypothetical protein NMBG2136_1815 [Neisseria meningitidis G2136]
gi|416179484|ref|ZP_11611001.1| hypothetical protein TIGR00046 [Neisseria meningitidis M6190]
gi|416193312|ref|ZP_11617115.1| hypothetical protein TIGR00046 [Neisseria meningitidis ES14902]
gi|416208239|ref|ZP_11621080.1| hypothetical protein TIGR00046 [Neisseria meningitidis 961-5945]
gi|433466490|ref|ZP_20423951.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
87255]
gi|433493350|ref|ZP_20450434.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
NM586]
gi|433503728|ref|ZP_20460682.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
NM126]
gi|325131649|gb|EGC54355.1| hypothetical protein TIGR00046 [Neisseria meningitidis M6190]
gi|325137512|gb|EGC60095.1| hypothetical protein TIGR00046 [Neisseria meningitidis ES14902]
gi|325141520|gb|EGC63990.1| hypothetical protein TIGR00046 [Neisseria meningitidis 961-5945]
gi|325199017|gb|ADY94473.1| conserved hypothetical protein TIGR00046 [Neisseria meningitidis
G2136]
gi|432204600|gb|ELK60639.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
87255]
gi|432226291|gb|ELK82022.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
NM586]
gi|432238355|gb|ELK93922.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
NM126]
Length = 241
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 115/249 (46%), Gaps = 29/249 (11%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRF+ S G V + + H+ VLR+ N+ + LF+GKG + +++
Sbjct: 1 MPRFYLPENLSVGQTVALPDNIVRHLN-VLRVRPNENITLFDGKGKAHAAQLTVLEKRRA 59
Query: 99 DVVAL-EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
+ L ED + N+ G R D+ ++K ELG ++ P+++E + R
Sbjct: 60 EAEILHED---TTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCI-VR 115
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA 217
G+ + + ++ G + PP +LP++ + +E+
Sbjct: 116 LDGERAAKRLARWQEIVISACEQSGRNTV------PP-----VLPIIGYREALDKMPSES 164
Query: 218 TPLVTALSSSRN-----ESSGLII--VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
T L+ +++ +R + SG I+ VGPEG +TE+E + EAG AV LG LR ET
Sbjct: 165 TKLIMSINRARKLADIRQPSGAIVFMVGPEGGWTEQEEQQAFEAGFQAVTLGKRILRTET 224
Query: 271 ATIALLATL 279
A +A LA +
Sbjct: 225 APLAALAAM 233
>gi|114331048|ref|YP_747270.1| 16S ribosomal RNA methyltransferase RsmE [Nitrosomonas eutropha
C91]
gi|114308062|gb|ABI59305.1| protein of unknown function DUF558 [Nitrosomonas eutropha C91]
Length = 253
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 99/225 (44%), Gaps = 13/225 (5%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQH 113
V + D H +VLRL D V LF+G GG GC+ ++ ++ VV +E L + +
Sbjct: 18 VTLNNDTSHHAVQVLRLKQGDPVILFDGTGGEFSGCLVQVRKSAC-VVKIEQ-HLPVERE 75
Query: 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGF 173
+ + A + DW+++K E G + PL+T L R G+ +
Sbjct: 76 SPLMLTLAQAVCTNEKMDWIIQKAVEQGVIYIQPLITNRTL-IRLTGERADKRWQHWQKI 134
Query: 174 IANSAFVYGGQRLHEMVLNPPMKI-----DGLLPLVSQSKLA---FVAIAEATPLVTALS 225
I ++ G R+ +++ P M + LL S L+ + A + LS
Sbjct: 135 IISACEQCGRNRIPQLL--PLMSLSHWLEQKLLQKQENSNLSGRDIILSPVARLRLAELS 192
Query: 226 SSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
+ ++ GPEG FTE+E + ++ AG + LG LR ET
Sbjct: 193 PPESGECITLLTGPEGGFTEEETDAMLHAGFIPICLGTRILRTET 237
>gi|189501155|ref|YP_001960625.1| 16S ribosomal RNA methyltransferase RsmE [Chlorobium
phaeobacteroides BS1]
gi|189496596|gb|ACE05144.1| protein of unknown function DUF558 [Chlorobium phaeobacteroides
BS1]
Length = 248
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 75/152 (49%), Gaps = 7/152 (4%)
Query: 51 GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVL 110
GG + VEG+EF+H+TKVLR + + + +G G + I +I R GL A+ + K VL
Sbjct: 15 GGALTVEGEEFFHITKVLRKKEREVIHITDGMGLSVTAEITKIGRNGL-TAAVTEKKKVL 73
Query: 111 PQHTQWNVFAAFGTLKGG-RADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNF 169
P + V A LK R D+ +EK TELG + P++TE + K +
Sbjct: 74 PPSAEVTV--ALSLLKSSQRFDFFLEKATELGVAGIVPMITERTVSQPK-AEKRARKLER 130
Query: 170 YYGFIANSAFVYGGQRLHEMVLNPPMKIDGLL 201
+ + ++A +R H + P+ D +L
Sbjct: 131 WKKVVVSAAL--QTKRYHFPEITAPLHFDAVL 160
>gi|255318401|ref|ZP_05359634.1| RNA methyltransferase [Acinetobacter radioresistens SK82]
gi|262378631|ref|ZP_06071788.1| RNA methyltransferase [Acinetobacter radioresistens SH164]
gi|421464950|ref|ZP_15913639.1| RNA methyltransferase, RsmE family [Acinetobacter radioresistens
WC-A-157]
gi|255304393|gb|EET83577.1| RNA methyltransferase [Acinetobacter radioresistens SK82]
gi|262299916|gb|EEY87828.1| RNA methyltransferase [Acinetobacter radioresistens SH164]
gi|400204879|gb|EJO35862.1| RNA methyltransferase, RsmE family [Acinetobacter radioresistens
WC-A-157]
Length = 239
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 105/249 (42%), Gaps = 30/249 (12%)
Query: 44 IPRFFSQ-----GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRF+ + G V + F H KVLR D LFNG+GG E + I +
Sbjct: 1 MPRFYIEADLTVGTTVELTETVFHHWVKVLRAQIGDSATLFNGRGGEFEANLTEISKKTA 60
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTL--KGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
V ++ P G + KG R D++++K TELG ++ LLT +
Sbjct: 61 SVA----IRSSNPADRTPPFTTVLGQVMSKGDRMDYVIQKATELGVTTIQ-LLTSERCEM 115
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAE 216
R D + + + + G R+ E++ PP+ + L Q L
Sbjct: 116 RLKYDRDQKKLDHWQAVVIAACEQCGMNRIPEIL--PPVPLTDWL----QQNLP------ 163
Query: 217 ATPLVTALSSSRN------ESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
AT LV A + + ++ +++GPEG +E E++ AG +G LR ET
Sbjct: 164 ATRLVLAPNKRQQNVLTDAQTDLALLIGPEGGLSEAEIDMANHAGFKNWCIGERILRTET 223
Query: 271 ATIALLATL 279
A + L+ L
Sbjct: 224 APVVALSIL 232
>gi|433495405|ref|ZP_20452465.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
NM762]
gi|432227785|gb|ELK83490.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
NM762]
Length = 241
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 113/248 (45%), Gaps = 27/248 (10%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRF+ S G V + + H+ VLR+ N+ + LF+GKG + +++
Sbjct: 1 MPRFYLPENLSVGQTVALPDNIVRHLN-VLRVRPNENITLFDGKGKAHAARLSFLEKRRA 59
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
+ L K + N+ G R D+ ++K ELG ++ P+++E + R
Sbjct: 60 EAEILH--KDTTDNESPLNITLIQSISSGERMDFTLQKSVELGVTAIQPVISERCI-VRL 116
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT 218
G+ + + ++ G + PP +LP++ + +E+T
Sbjct: 117 DGERAAKRLARWQEIVISACEQSGRNTV------PP-----VLPIIGYREALDKMPSEST 165
Query: 219 PLVTALSSSRN-----ESSGLII--VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA 271
L+ +++ +R SG I+ VGPEG +TE+E + EAG AV LG LR ETA
Sbjct: 166 KLIMSINRARKLADIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGFQAVTLGKRILRTETA 225
Query: 272 TIALLATL 279
+A LA +
Sbjct: 226 PLAALAAM 233
>gi|442609127|ref|ZP_21023868.1| Ribosomal RNA small subunit methyltransferase E [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
gi|441749739|emb|CCQ09930.1| Ribosomal RNA small subunit methyltransferase E [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
Length = 244
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 103/229 (44%), Gaps = 10/229 (4%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQH 113
V ++ D H+ +VLR+ D V LFNG+GG + + + + + +E + +
Sbjct: 18 VTLDDDAAGHIGRVLRMREGDLVSLFNGRGGEFKAELIEVGKKQVIAKPIEFIDKCV--E 75
Query: 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGF 173
+ + G +G + D+ ++K ELG +TPL TE K+ + + +
Sbjct: 76 SPLKIHLGQGISRGDKMDFTIQKSVELGITEITPLFTER--CGVKLNGDRLDKKHQQWQK 133
Query: 174 IANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSG 233
IA SA G+ + V P L + KL AE ++ + +SG
Sbjct: 134 IAISAAEQSGRNIIPHVHYPVDLATWLQTTTDELKLTLHPRAEH-----SIKTLPVPTSG 188
Query: 234 L-IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
+ +VGPEG F+++E+ V LGP LR ETA + +L+ L L
Sbjct: 189 VRFLVGPEGGFSDQEIAATQANEFVDVRLGPRVLRTETAALTVLSALQL 237
>gi|319796621|ref|YP_004158261.1| hypothetical protein Varpa_5998 [Variovorax paradoxus EPS]
gi|315599084|gb|ADU40150.1| protein of unknown function DUF558 [Variovorax paradoxus EPS]
Length = 246
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 96/222 (43%), Gaps = 13/222 (5%)
Query: 66 KVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAFGTL 125
+VLR+ D + LF+G GG E I+R+ R+ DV + + + V A G
Sbjct: 27 QVLRMQPGDALTLFDGAGGEYEATIERMGRS--DVSVTVGVHHPVEREATRAVHLAVGMP 84
Query: 126 KGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQR 185
R DWLVEK TELG S+ PL T H R G+ + + G R
Sbjct: 85 ANERMDWLVEKATELGVASIQPLAT-AHGVLRLSGERAEKKRAHWEAIAIAACEQCGRNR 143
Query: 186 LHEMVLNPPMKIDGLLPLVSQSK-----LAFV-AIAEATPLVTALSSSR--NESSGLIIV 237
+ V++P G + + FV ++AE T + A S++ + ++
Sbjct: 144 V--PVIHPVRSFSGNSGWIDAQQDEGATARFVLSLAEGTQGIEAASAAHAPDNRDVRVLS 201
Query: 238 GPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
GPEG + E + + G V LG LR ETA + L +L
Sbjct: 202 GPEGGLSAAEEQEAIARGFAPVTLGLRVLRAETAALVALVSL 243
>gi|433497477|ref|ZP_20454504.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
M7089]
gi|433499523|ref|ZP_20456527.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
M7124]
gi|433501589|ref|ZP_20458569.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
NM174]
gi|432232082|gb|ELK87736.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
M7089]
gi|432232593|gb|ELK88230.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
M7124]
gi|432233088|gb|ELK88721.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
NM174]
Length = 241
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 113/248 (45%), Gaps = 26/248 (10%)
Query: 41 RGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRID--RTGL 98
R +P S G V + + H+ VLR+ N+ + LF+GKG + ++ R G
Sbjct: 3 RFHLPENLSIGQTVNLPDNIVRHLN-VLRVRPNENITLFDGKGKAHAARLTVLEKRRAGA 61
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
+++ E P N+ G R D+ ++K ELG ++ P+++E + R
Sbjct: 62 EILHEETADAESP----LNITLIQSISSGERMDFTLQKSVELGVTAIQPVISERCI-VRL 116
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT 218
G+ + + ++ G + PP +LP++ + +E+T
Sbjct: 117 DGERAAKRLARWQEIVISACEQSGRNTV------PP-----VLPIIGYREALDKMPSEST 165
Query: 219 PLVTALSSSRN-----ESSGLII--VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA 271
L+ +++ +R SG I+ VGPEG +TE+E + EAG AV LG LR ETA
Sbjct: 166 KLIMSINRARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGFQAVTLGKRILRTETA 225
Query: 272 TIALLATL 279
+A LA +
Sbjct: 226 PLAALAAM 233
>gi|33592148|ref|NP_879792.1| 16S ribosomal RNA methyltransferase RsmE [Bordetella pertussis
Tohama I]
gi|384203450|ref|YP_005589189.1| 16S ribosomal RNA methyltransferase RsmE [Bordetella pertussis CS]
gi|408415290|ref|YP_006625997.1| hypothetical protein BN118_1337 [Bordetella pertussis 18323]
gi|33571792|emb|CAE41299.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
gi|332381564|gb|AEE66411.1| 16S ribosomal RNA methyltransferase RsmE [Bordetella pertussis CS]
gi|401777460|emb|CCJ62762.1| conserved hypothetical protein [Bordetella pertussis 18323]
Length = 246
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 108/246 (43%), Gaps = 20/246 (8%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRF+ + G V + H +VLRL + LF+G GG ++ +
Sbjct: 3 LPRFYCDARLAPGECVALPEALAHHAVRVLRLRAGAALVLFDGAGGEYPATLEIEGKA-- 60
Query: 99 DVVALEDLKLVLPQHTQW--NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
A L +P+ + + G G + DW+VEK ELGA V+P+ Q
Sbjct: 61 ---AWAQLGAHVPREAELPGRITLVQGLPAGDKMDWVVEKAVELGAWRVSPIAA----QR 113
Query: 157 RKIGDNGFLSCN--FYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI 214
+ NG + ++ IA +A G R M ++ P + L + L +
Sbjct: 114 SVLQLNGARAEKRLAHWQRIAQAAAEQCG-RNRLMAVDAPQALAAWLAQAPGAALRLLCH 172
Query: 215 AEAT-PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
EA L AL+ ++VGPEG ++++E+ + AG AV GP LR ETA I
Sbjct: 173 PEAELDLAGALARHAAHDDICLLVGPEGGWSDEELEQARAAGVQAVRFGPRVLRTETAGI 232
Query: 274 ALLATL 279
AL+A +
Sbjct: 233 ALIAAV 238
>gi|225175075|ref|ZP_03729071.1| protein of unknown function DUF558 [Dethiobacter alkaliphilus AHT
1]
gi|225169251|gb|EEG78049.1| protein of unknown function DUF558 [Dethiobacter alkaliphilus AHT
1]
Length = 246
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 101/239 (42%), Gaps = 34/239 (14%)
Query: 46 RFFSQGGIVRVEGDEF-------WHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
RFF G +V GDE H+ +VLR S VEL + KG I +D +
Sbjct: 3 RFFYGPG--QVHGDEVILTDDDAHHLLRVLRASVGQEVELCDDKGSCRRAVIAGVDHGEV 60
Query: 99 DVV---ALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHL- 154
L D + V+ + AFG LKG + +++++K TELGA P +E +
Sbjct: 61 RCRLGHELPDSEAVI------RFYLAFGVLKGEKTEFILQKATELGAAGFFPFTSERSVV 114
Query: 155 ----QSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQ-SKL 209
++ KI +G A S +R LNPP K +L L K+
Sbjct: 115 RPDKKAEKIQKR---WQKIIHGAAAQS------RRAIIPQLNPPCKWPDVLDLSKTFDKV 165
Query: 210 AFVAIAEAT-PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLR 267
F +E PL +L L+I GPEG F+ KE + + G V LGP LR
Sbjct: 166 VFFWESEEDRPLAKSLEGCSRGDRVLLITGPEGGFSAKEAAALGKLGIEPVTLGPRILR 224
>gi|428767378|ref|YP_007153489.1| ribosomal RNA small subunit methyltransferase E [Enterococcus
faecalis str. Symbioflor 1]
gi|427185551|emb|CCO72775.1| ribosomal RNA small subunit methyltransferase E [Enterococcus
faecalis str. Symbioflor 1]
Length = 250
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 109/247 (44%), Gaps = 29/247 (11%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVEL-FNGKGGLIEGCIQRIDRTGL--DVVALE 104
+ + + +V + + H+ +V+R++ NDR L F K ++ ++ ID T + ++ E
Sbjct: 10 YQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVE-IDSTSVYFKEISKE 68
Query: 105 DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSV------TPLLTELHLQSRK 158
++ LP V A G KG + +W+V+K TELG T ++ H + R
Sbjct: 69 EMDKELP----IEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDH-KKRA 123
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA- 217
+ IA A R ++ K ++ VA E+
Sbjct: 124 AKEKRLQK-------IATEA-AEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESA 175
Query: 218 -----TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
+ L LS+ + + ++ GPEG F +E+ + ++AGA GLGP LR ETA
Sbjct: 176 KQGEKSQLAQVLSTCQPGACLCVLFGPEGGFAPQEIEQFLQAGAKLCGLGPRILRAETAP 235
Query: 273 IALLATL 279
+ LL+ +
Sbjct: 236 LYLLSAV 242
>gi|308069954|ref|YP_003871559.1| hypothetical protein PPE_03203 [Paenibacillus polymyxa E681]
gi|305859233|gb|ADM71021.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
Length = 254
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 109/239 (45%), Gaps = 21/239 (8%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQH 113
V V G++ H+ KV+R + D++ + +G + I++ + +E LK+ +
Sbjct: 16 VIVAGEDARHIAKVMRGRSGDKIIVSDGVSREALVALDTIEQDHVTATIIEPLKMTSEPY 75
Query: 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNFY 170
Q V A KG + + +++KCTE+GA P L+E + ++K G +
Sbjct: 76 VQ--VTIAQSLPKGDKMETVMQKCTEIGATGFVPFLSERTVVQYDAKKEGKR----LERW 129
Query: 171 YGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT---------PLV 221
+ +A R+ E ++ PM LL + L + PL
Sbjct: 130 RKIVKEAAEQSHRNRIPE--ISAPMTWKELLASFAGYDLICYCYEKEQGKQLRDVIQPLA 187
Query: 222 TALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
+S+ + L++VGPEG FTE E + +AGA + GLG LR ETA +A LA ++
Sbjct: 188 EQWAST-DMPRVLLVVGPEGGFTEAESLEAEQAGAQSTGLGRRILRAETAGMAALACIL 245
>gi|83720201|ref|YP_441739.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia
thailandensis E264]
gi|257137908|ref|ZP_05586170.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia
thailandensis E264]
gi|83654026|gb|ABC38089.1| conserved hypothetical protein TIGR00046 [Burkholderia
thailandensis E264]
Length = 256
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 100/239 (41%), Gaps = 21/239 (8%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF G + + D H +VLRL D + LF+G GG + ID+ G
Sbjct: 11 VPRFFVDAALRTGATLPLPADVARH-AQVLRLQPGDALALFDGTGGQYRAQLVEIDKRG- 68
Query: 99 DVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
AL + P + + V A G G + DW++EK ELG +V PL T +
Sbjct: 69 ---ALARIDAFDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGV-V 124
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMK-----IDGLLPLVSQSKLAF 211
+ G+ + + G + S G R+ + P++ +D L + +L
Sbjct: 125 KLSGERADKRVSHWRGVVRASCEQCGRNRVPGVA---PVRGFDAWLDALPDAPAAGELRL 181
Query: 212 VAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
+ A+ +L + +++GPEG + E G A+ LGP LR ET
Sbjct: 182 LLSPRASVPFASLPDAPPAGDVTLLIGPEGGLSPDEEQAARARGFAALSLGPRVLRTET 240
>gi|224024059|ref|ZP_03642425.1| hypothetical protein BACCOPRO_00776 [Bacteroides coprophilus DSM
18228]
gi|224017281|gb|EEF75293.1| hypothetical protein BACCOPRO_00776 [Bacteroides coprophilus DSM
18228]
Length = 232
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 99/242 (40%), Gaps = 49/242 (20%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQW-- 116
+E H +VLRL D V L +GKG + I V LE +PQ W
Sbjct: 18 EEAGHCLRVLRLGMGDEVMLTDGKGCFYKAVISAATNKRCQVKILE----TIPQEPFWKG 73
Query: 117 NVFAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
++ A K R +WL EK TE+G ++ FL+C F
Sbjct: 74 HLHLALAPTKNMDRIEWLAEKATEIGFDELS-----------------FLNCRF------ 110
Query: 176 NSAFVYGGQRLHEMVLNP-PMKIDGLLPLVS---------------QSKLAFVAIAEATP 219
+ V +R+ ++V++ + P+V+ Q +A E
Sbjct: 111 SERKVIKTERVEKIVVSAVKQSLKARKPVVNEMTDFMKFMERDFPGQKFIAHCYEGEKPL 170
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
L L + L+++GPEGDF+ +EV + E G AV LG RLR ETA + + T+
Sbjct: 171 LKDVLVPGED---ALVLIGPEGDFSPEEVARAEEKGFHAVSLGKSRLRTETAALVAVHTM 227
Query: 280 ML 281
L
Sbjct: 228 NL 229
>gi|167630502|ref|YP_001681001.1| hypothetical protein HM1_2440 [Heliobacterium modesticaldum Ice1]
gi|167593242|gb|ABZ84990.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1]
Length = 254
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 106/250 (42%), Gaps = 24/250 (9%)
Query: 45 PRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE 104
PR + G V ++ +E H++KVLRL D V F+G+G E + I+ D LE
Sbjct: 8 PRNLT-GARVCLDREESQHLSKVLRLRAGDAVLAFDGQGNEYEAIVAEING---DKAFLE 63
Query: 105 DLKLV-LPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHL--------- 154
L+ + ++ G KG + + +++K TELG + + P+LTE +
Sbjct: 64 SLRPTGASREAPIRLWLLQGVAKGEKMELVIQKATELGVEKIFPVLTERSVVRFDAAKAK 123
Query: 155 ----QSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLA 210
+ +KI C + I E++ + M + L+P +
Sbjct: 124 ERRDRWQKIAREAAKQC--WRTVIPEVQLPAA---WAEVITDWDMTMPLLIPWEKEQGKG 178
Query: 211 FVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
+ L S + GL I GPEG T EV + GA V LGP LR ET
Sbjct: 179 LKQVLTVLKKEGLLHDSPAKVIGLAI-GPEGGLTAAEVALARDRGARTVSLGPRILRTET 237
Query: 271 ATIALLATLM 280
A IA LA +M
Sbjct: 238 AGIAALAAIM 247
>gi|405379603|ref|ZP_11033451.1| RNA methyltransferase, RsmE family [Rhizobium sp. CF142]
gi|397323851|gb|EJJ28241.1| RNA methyltransferase, RsmE family [Rhizobium sp. CF142]
Length = 245
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 103/222 (46%), Gaps = 14/222 (6%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
S+G V ++F ++ VLR+ + LFNG+ G + + R + + A E+ +
Sbjct: 16 LSKGAAVEANSEQFNYLANVLRMDEGAEILLFNGRDGEWKASLSFPTRKRILLAATEETR 75
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
PQ ++ F LK GR D+LV+K E+GA + P++T+ H+Q KI + +
Sbjct: 76 ---PQPAPSDLHYLFAPLKVGRMDYLVQKAVEMGAGFLQPVMTQ-HVQG-KITNLDKIRA 130
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLP-LVSQSKLAFVAIAEATPLVTALSS 226
N A + G + E P+++ LL + ++ + +A L S
Sbjct: 131 NVIEA--AEQCGILGIPNVAE-----PVRLADLLDRWPADRRIIYCDEGDAGQNPLPLLS 183
Query: 227 SRNESSGLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLR 267
E ++VGPEG F+ +E ++ TA+ LGP LR
Sbjct: 184 KVTERKLALLVGPEGGFSGEEQTRLRSLDFVTAIPLGPRILR 225
>gi|124265393|ref|YP_001019397.1| 16S ribosomal RNA methyltransferase RsmE [Methylibium
petroleiphilum PM1]
gi|124258168|gb|ABM93162.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
Length = 245
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 100/216 (46%), Gaps = 22/216 (10%)
Query: 65 TKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE----DLKLVLPQHTQWNVFA 120
+VLRL D + LF+G+G E + ++ R+ + V D +L LP +
Sbjct: 26 VQVLRLQPGDGLTLFDGRGSEWEARVVQMGRSEVRVRVGASQPVDRELPLP------ITL 79
Query: 121 AFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFV 180
A G R DWLVEK TELG ++ PL+ E + R G+ + G + +A
Sbjct: 80 AVGMPANERMDWLVEKATELGVSTLQPLVCERSV-LRLGGERADRKLAHWQGVASAAAEQ 138
Query: 181 YGGQRLHEMVLNPPMKIDG-----LLPLVSQSKLAFVAIAEAT-PLVTALSSSRNESSGL 234
G L ++ P++ G L P V++++ +++AE T P V AL + GL
Sbjct: 139 CGRTTLPRLL---PVRAFGEWQRALRPDVTEARF-VLSLAEGTRPFVEALPPALRAGQGL 194
Query: 235 IIV-GPEGDFTEKEVNKIVEAGATAVGLGPHRLRVE 269
+ + GPEG E + AG + LGP LR E
Sbjct: 195 LFLSGPEGGLCNTEDAQARAAGLQPITLGPRVLRAE 230
>gi|390443478|ref|ZP_10231270.1| 16S ribosomal RNA methyltransferase RsmE [Nitritalea halalkaliphila
LW7]
gi|389666663|gb|EIM78108.1| 16S ribosomal RNA methyltransferase RsmE [Nitritalea halalkaliphila
LW7]
Length = 235
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 99/235 (42%), Gaps = 18/235 (7%)
Query: 51 GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEG--CIQRIDRTGLDVVALEDLKL 108
G V++ +E H+ KVLR D V +G+G + + + L+V+ +E +K
Sbjct: 12 GQRVQLSAEESKHLIKVLRKQIGDTVFATDGRGLKAQARIVVDHFKQAELEVLEVEQVK- 70
Query: 109 VLPQHTQWNVFAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
+++ A K R +W +EK TE+G V + T+ + +L
Sbjct: 71 ----RPDFHITVALAPTKNQDRIEWFLEKATEVGVDQVLLMQTDH-------SEKSYLKE 119
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVS-QSKLAFVAIAEATPLVTALSS 226
+ I +A + + L + D LL Q F+A
Sbjct: 120 DRLEKKILAAA--KQSHKFYLPTLETGISFDALLTDARFQDHARFIAYVSEQEREGLFGL 177
Query: 227 SRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
+ + L+++GPEGDF+ +E+ AG LGP+RLR ETA + + TL L
Sbjct: 178 APKNAQYLLLIGPEGDFSTREITAAKAAGFLPCALGPYRLRTETAALMAVHTLQL 232
>gi|313205520|ref|YP_004044697.1| hypothetical protein Riean_0009 [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|383484854|ref|YP_005393766.1| hypothetical protein RA0C_0212 [Riemerella anatipestifer ATCC 11845
= DSM 15868]
gi|386320505|ref|YP_006016667.1| Ribosomal RNA small subunit methyltransferase E [Riemerella
anatipestifer RA-GD]
gi|416110469|ref|ZP_11592084.1| Ribosomal RNA small subunit methyltransferase E [Riemerella
anatipestifer RA-YM]
gi|442315315|ref|YP_007356618.1| hypothetical protein G148_1620 [Riemerella anatipestifer RA-CH-2]
gi|312444836|gb|ADQ81191.1| protein of unknown function DUF558 [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|315023392|gb|EFT36402.1| Ribosomal RNA small subunit methyltransferase E [Riemerella
anatipestifer RA-YM]
gi|325335048|gb|ADZ11322.1| Ribosomal RNA small subunit methyltransferase E [Riemerella
anatipestifer RA-GD]
gi|380459539|gb|AFD55223.1| hypothetical protein RA0C_0212 [Riemerella anatipestifer ATCC 11845
= DSM 15868]
gi|441484238|gb|AGC40924.1| hypothetical protein G148_1620 [Riemerella anatipestifer RA-CH-2]
Length = 231
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 103/229 (44%), Gaps = 22/229 (9%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEG-CIQRIDRTGLDVVALEDLKLVLPQ 112
V ++ DE H++KVLR+ + + + +GKG + +G I + L+++ +++ P
Sbjct: 13 VIIDSDEQHHISKVLRMKEGEMLYVTDGKGNVAKGNLILEGKKVELNIL---EIQTKTPP 69
Query: 113 HTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTEL----HLQSRKIGDNGFLSCN 168
+ + A T R ++ VEK TE+G ++ LLTE HL KI
Sbjct: 70 FSPYLHIAIAPTKNIDRTEFFVEKATEMGISEISFLLTEKSERKHLNIDKIQKK------ 123
Query: 169 FYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSR 228
IA S R H +N K + ++ FVA + +LS
Sbjct: 124 ----IIAASK---QSLRYHFPKVNDLQKFTSFMQ-TQTAENTFVAHCDKAFKRVSLSEIP 175
Query: 229 NESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
++GPEGDF+ E+ ++E G A+ LG RLR ETA + + A
Sbjct: 176 LVDKVCFLIGPEGDFSLSEIELLLEKGVQAISLGNQRLRTETAGVFVAA 224
>gi|257084824|ref|ZP_05579185.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|256992854|gb|EEU80156.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
Length = 250
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 111/255 (43%), Gaps = 29/255 (11%)
Query: 40 SRGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVEL-FNGKGGLIEGCIQRIDRTGL 98
R I + + + +V + + H+ +V+R++ NDR L F K ++ ++ ID T +
Sbjct: 2 QRYFIKEDYQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVE-IDSTSV 60
Query: 99 --DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSV------TPLLT 150
++ E++ LP V A G KG + +W+V+K TELG T ++
Sbjct: 61 YFKEISKEEMDKELP----IEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVK 116
Query: 151 ELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLA 210
H + R + IA A R ++ K ++
Sbjct: 117 WDH-KKRAAKEKRLQK-------IATEA-AEQSHRQQTPSVSLVEKTQEIIAQFDTYDTV 167
Query: 211 FVAIAEA------TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPH 264
VA E+ + L LS+ + + ++ GPEG F +E+ + ++AGA GLGP
Sbjct: 168 LVAYEESAKQGEKSQLAQVLSTCQPGARLCVLFGPEGGFAPQEIEQFLQAGAKLCGLGPR 227
Query: 265 RLRVETATIALLATL 279
LR ETA + LL+ +
Sbjct: 228 ILRAETAPLYLLSAV 242
>gi|254482677|ref|ZP_05095915.1| conserved hypothetical protein TIGR00046 [marine gamma
proteobacterium HTCC2148]
gi|214037036|gb|EEB77705.1| conserved hypothetical protein TIGR00046 [marine gamma
proteobacterium HTCC2148]
Length = 243
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 110/247 (44%), Gaps = 26/247 (10%)
Query: 44 IPRFFSQGGIVRVEGD------EFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTG 97
IPR ++ G +++ E H+ + LR+ ++ LF+G+GG I + +
Sbjct: 3 IPRIYA-GQVLQAESSFDLEPGPSQHLARALRMQEAGQLILFDGRGGEYPATITSVGKKC 61
Query: 98 LDVVA--LEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQ 155
+ V+ D+++ P + +G R DW+++K TELG V+PLLTE +
Sbjct: 62 VSVLTGQRHDIEVESP----LAIHLGISISRGERMDWVIQKATELGVTHVSPLLTE-RTE 116
Query: 156 SRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLV---SQSKLAFV 212
+ D + ++ G RL V+NP LLP SQ++L V
Sbjct: 117 VKLKADRAEKKRQHWQQIAISACEQCGRNRL--PVINPLT----LLPKWLNDSQAELKLV 170
Query: 213 AIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
A L + R+ +++GPEG + E++ + A+ LG LR ETA
Sbjct: 171 LHHRAENLSAQSTPPRSID---LLIGPEGGLSPDEIHLAEQRAFHALRLGDRVLRTETAP 227
Query: 273 IALLATL 279
+A L+ L
Sbjct: 228 LAALSIL 234
>gi|255693403|ref|ZP_05417078.1| RNA methyltransferase, RsmE family [Bacteroides finegoldii DSM
17565]
gi|260620787|gb|EEX43658.1| RNA methyltransferase, RsmE family [Bacteroides finegoldii DSM
17565]
Length = 232
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 94/242 (38%), Gaps = 49/242 (20%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
+E H +VLRL+ D + L +GKG + I + L +K + Q W
Sbjct: 18 EEAQHCIRVLRLNIGDEITLTDGKGNFYKAEIT----AATNKRCLVAIKETVFQEPLWPC 73
Query: 119 FAAFG---TLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
G T R +W EK TE+G +T FL+C F
Sbjct: 74 HLHIGMAPTKNMDRNEWFAEKATEIGFDELT-----------------FLNCRF------ 110
Query: 176 NSAFVYGGQRLHEMV--------------LNPPMKIDGLL--PLVSQSKLAFVAIAEATP 219
+ V +R+ +++ LN D + Q +A +
Sbjct: 111 SERKVIKTERIEKILISAIKQSLKARLPKLNEMTDFDKFITREFKGQKFIAHCYEGDKPL 170
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
L L + L+++GPEGDF+E+EV K +E G + LG RLR ETA +A L
Sbjct: 171 LKNILKPGED---ALVLIGPEGDFSEEEVKKAIEQGFVPISLGKSRLRTETAALAACHIL 227
Query: 280 ML 281
L
Sbjct: 228 NL 229
>gi|110598135|ref|ZP_01386413.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031]
gi|110340267|gb|EAT58764.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031]
Length = 247
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 106/243 (43%), Gaps = 18/243 (7%)
Query: 51 GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVL 110
G + ++ DEF H+ +VLR + + +G G E I + ++ L+ L D +LV
Sbjct: 15 AGRIVIDSDEFHHLARVLRKQKGAVILVTDGNGIRCEARISEVGKSSLEAEIL-DHRLVG 73
Query: 111 PQHTQWNVFAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHL-QSRKIGDNGFLSCN 168
T V A LK R +W +EK TELG S+ P++T L Q K G L
Sbjct: 74 EPKT--GVTVALSMLKNPQRFEWFLEKATELGVSSIIPMITARTLAQPSKERVQGRLK-- 129
Query: 169 FYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS-KLAFVAIAEATPLVTALSSS 227
+ I SA +R H L+ P+ + L +L +E P V
Sbjct: 130 -RWKTIVLSA-ARQSKRYHLPALSEPLTFAQVSALEGYDLRLIPYEASEEAPKVEFAGKK 187
Query: 228 RNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA---TIALLATLMLCSD 284
L ++G EG FT+ EV K AG + LG LR ETA +AL+ T +L +
Sbjct: 188 -----ALFMIGGEGGFTDSEVEKAKTAGFCEISLGRTILRAETAGIFAVALVRTRLLGEE 242
Query: 285 SQQ 287
+
Sbjct: 243 RSE 245
>gi|409100458|ref|ZP_11220482.1| hypothetical protein PagrP_19357 [Pedobacter agri PB92]
Length = 234
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 102/228 (44%), Gaps = 18/228 (7%)
Query: 52 GIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLP 111
I + +E H +VLRL V L +G+GG I V+L LK+
Sbjct: 12 NIYTLNEEESKHCVRVLRLPVGALVNLVDGRGGFYTA---EITSDNPKKVSLSILKVETE 68
Query: 112 QHTQWNVF--AAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNF 169
H + + A T R +W +EK TELG +TP++T+ R++ L+
Sbjct: 69 FHKRNHYLHIAVAPTKNIDRIEWFLEKATELGIDEITPIITDR--SERRVVKEDRLNK-- 124
Query: 170 YYGFIANSAFVYGGQRLHEMVLNPPMKIDGLL--PLVSQSKLAFVAIAEATPLVTALSSS 227
+ SA V + + +LN + + L + + +A + ++ L
Sbjct: 125 ----VITSA-VKQSIKAYHPILNESIPFNKFLNSSIEGEKLIAHCIDNQGKKYISELVIP 179
Query: 228 RNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIAL 275
+ L+++GPEGDFT +EVN + G + LG +RLR ETA +++
Sbjct: 180 HQKY--LVLIGPEGDFTPEEVNLALNKGFKPLTLGDNRLRTETAALSV 225
>gi|254787838|ref|YP_003075267.1| 16S rRNA m3U1498 methyltransferase [Teredinibacter turnerae T7901]
gi|237684009|gb|ACR11273.1| 16S rRNA m3U1498 methyltransferase [Teredinibacter turnerae T7901]
Length = 241
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 107/241 (44%), Gaps = 14/241 (5%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
IPR ++Q + V +E H+ KVLR+ T + LFNG GG I +
Sbjct: 3 IPRIYTQQLLQPEVDVVLEEAASHHLLKVLRMETGRELILFNGLGGEYRATITSATKKAA 62
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
V E + + + A G +G R DW+++K TELG + PL +E + +
Sbjct: 63 TVTISEHDPV--ERESPLVTELAVGISRGDRFDWVLQKATELGISRIVPLFSE-RSEVKL 119
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT 218
G+ + + + + L E L P ++ + S L FV +T
Sbjct: 120 SGERLEKRLSQWQKVVIGACEQCQRNTLPE--LTAPQSVENYV-TDSLCDLRFVLHHRST 176
Query: 219 PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
++ L++ +S ++VGPEG ++ E+ AG + + LGP LR ETA + L+
Sbjct: 177 HHLSQLAAP---ASVALLVGPEGGLSDAEIQLAENAGFSPLALGPRVLRTETAPLVALSV 233
Query: 279 L 279
+
Sbjct: 234 V 234
>gi|452975111|gb|EME74930.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus sonorensis L12]
Length = 255
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 99/234 (42%), Gaps = 15/234 (6%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTG--LDVVALEDLKLVLP 111
V ++G++ H+ V+R+S+ D V G E I+ + + L VV LP
Sbjct: 19 VIIKGEDVHHIVNVMRMSSGDHVMCCAKDGHEAECRIESLSKEEVVLSVVDWTGKNRELP 78
Query: 112 QHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYY 171
V A G KG + +W+++K TELGA S P E K+ +
Sbjct: 79 ----IRVHIANGLPKGDKLEWIIQKGTELGASSFFPF--EASRSVVKLDHKKAKKKRERW 132
Query: 172 GFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP------LVTALS 225
IA A R + + GLL + VA E++ + +
Sbjct: 133 LKIAKEA-AEQSHRNKIPEVGGVLTFKGLLESLPSFDKCVVAYEESSKQGENSQFQSVIK 191
Query: 226 SSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
SS L++ GPEG F+E E+ + E GA A GLGP LR ETA + LA +
Sbjct: 192 DLPEGSSLLMVFGPEGGFSESEIEALKEKGALACGLGPRILRAETAPLYALAAV 245
>gi|284055742|pdb|3KW2|A Chain A, Crystal Structure Of Probable Rrna-Methyltransferase From
Porphyromonas Gingivalis
gi|284055743|pdb|3KW2|B Chain B, Crystal Structure Of Probable Rrna-Methyltransferase From
Porphyromonas Gingivalis
Length = 257
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 94/234 (40%), Gaps = 12/234 (5%)
Query: 55 RVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHT 114
R+ DE H+ +VLR DR+ L +G+G + I+ DR V P
Sbjct: 18 RLPDDEAGHILRVLRXQAGDRLRLTDGRGSFFDAVIETADRKSCYVSVCGQESWQKPWRD 77
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNF---YY 171
+ + A T + R +W +EK E+G V + +E H + R+I
Sbjct: 78 RITI-AIAPTKQSERXEWXLEKLVEIGVDEVVFIESE-HSERRRIKAERLERIAISAXKQ 135
Query: 172 GFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNES 231
A+ + + ++ + P L+ V ++ A + P
Sbjct: 136 SLKASFPVIRVNIPIQTVIADTPKAAVRLIAYVDEAVRAEITQGRGYP----SDFYHVGQ 191
Query: 232 SGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA---LLATLMLC 282
LI++GPEGDF+ EV + AG V LG RLR ETA + + TL C
Sbjct: 192 DVLILIGPEGDFSPSEVESALLAGFAPVSLGESRLRTETAGLVACQWIHTLQAC 245
>gi|347753156|ref|YP_004860721.1| ribosomal RNA small subunit methyltransferase E [Bacillus coagulans
36D1]
gi|347585674|gb|AEP01941.1| Ribosomal RNA small subunit methyltransferase E [Bacillus coagulans
36D1]
Length = 250
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 101/237 (42%), Gaps = 21/237 (8%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRI-DRTGLDVVA----LEDLKL 108
+R+ G+ + H+ +V+R+S R F G + CI I + TG VVA E
Sbjct: 16 IRLSGENYHHIARVMRMSVGSR---FYGVFSDEKVCICEIGEITGDAVVARITGWETAVK 72
Query: 109 VLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCN 168
LP H V + G K + +W+++K TELGA P L E + K
Sbjct: 73 ELPVH----VTVSCGLPKADKLEWIIQKGTELGAFQFLPFLAERSVV--KWDTKKEAKKR 126
Query: 169 FYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP------LVT 222
+ IA A R H ++PP+ L+ + VA E
Sbjct: 127 ERWQKIAQEA-AEQSHRSHLPEISPPVSFQQLIEESHTYQYKLVAFEENAKEGEQHRFAE 185
Query: 223 ALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
LS+ + L + GPEG + E+ ++ AG + GLGP LR ETA + +L+ +
Sbjct: 186 LLSNMSEGGNVLAVFGPEGGLSLDEIRRLEAAGFVSCGLGPRILRAETAPLYVLSAI 242
>gi|255972384|ref|ZP_05422970.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|255975487|ref|ZP_05426073.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256619449|ref|ZP_05476295.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|256762904|ref|ZP_05503484.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|256853489|ref|ZP_05558859.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256959288|ref|ZP_05563459.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|257079354|ref|ZP_05573715.1| conserved hypothetical protein [Enterococcus faecalis JH1]
gi|257082206|ref|ZP_05576567.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
gi|257090256|ref|ZP_05584617.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|257422237|ref|ZP_05599227.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|294779744|ref|ZP_06745131.1| RNA methyltransferase, RsmE family [Enterococcus faecalis PC1.1]
gi|300860530|ref|ZP_07106617.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TUSoD
Ef11]
gi|384513601|ref|YP_005708694.1| RsmE family RNA methyltransferase [Enterococcus faecalis OG1RF]
gi|384518977|ref|YP_005706282.1| RNA methyltransferase family protein [Enterococcus faecalis 62]
gi|397700205|ref|YP_006537993.1| RNA methyltransferase family protein [Enterococcus faecalis D32]
gi|421512508|ref|ZP_15959313.1| Ribosomal RNA small subunit methyltransferase E [Enterococcus
faecalis ATCC 29212]
gi|430367253|ref|ZP_19427816.1| RNA methyltransferase, RsmE family [Enterococcus faecalis M7]
gi|255963402|gb|EET95878.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|255968359|gb|EET98981.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256598976|gb|EEU18152.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|256684155|gb|EEU23850.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|256711948|gb|EEU26986.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256949784|gb|EEU66416.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|256987384|gb|EEU74686.1| conserved hypothetical protein [Enterococcus faecalis JH1]
gi|256990236|gb|EEU77538.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
gi|256999068|gb|EEU85588.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|257164061|gb|EEU94021.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|294453118|gb|EFG21533.1| RNA methyltransferase, RsmE family [Enterococcus faecalis PC1.1]
gi|295113239|emb|CBL31876.1| RNA methyltransferase, RsmE family [Enterococcus sp. 7L76]
gi|300849569|gb|EFK77319.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TUSoD
Ef11]
gi|323481110|gb|ADX80549.1| RNA methyltransferase family protein [Enterococcus faecalis 62]
gi|327535490|gb|AEA94324.1| RsmE family RNA methyltransferase [Enterococcus faecalis OG1RF]
gi|397336844|gb|AFO44516.1| RNA methyltransferase family protein [Enterococcus faecalis D32]
gi|401674392|gb|EJS80745.1| Ribosomal RNA small subunit methyltransferase E [Enterococcus
faecalis ATCC 29212]
gi|429516726|gb|ELA06205.1| RNA methyltransferase, RsmE family [Enterococcus faecalis M7]
Length = 250
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 109/247 (44%), Gaps = 29/247 (11%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVEL-FNGKGGLIEGCIQRIDRTGL--DVVALE 104
+ + + +V + + H+ +V+R++ NDR L F K ++ ++ ID T + ++ E
Sbjct: 10 YQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVE-IDSTSVYFKEISKE 68
Query: 105 DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSV------TPLLTELHLQSRK 158
++ LP V A G KG + +W+V+K TELG T ++ H + R
Sbjct: 69 EMDKELP----IEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDH-KKRA 123
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA- 217
+ IA A R ++ K ++ VA E+
Sbjct: 124 AKEKRLQK-------IATEA-AEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESA 175
Query: 218 -----TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
+ L LS+ + + ++ GPEG F +E+ + ++AGA GLGP LR ETA
Sbjct: 176 KQGEKSQLAQVLSTCQPGARLCVLFGPEGGFAPQEIEQFLQAGAKLCGLGPRILRAETAP 235
Query: 273 IALLATL 279
+ LL+ +
Sbjct: 236 LYLLSAV 242
>gi|253698878|ref|YP_003020067.1| 16S ribosomal RNA methyltransferase RsmE [Geobacter sp. M21]
gi|251773728|gb|ACT16309.1| protein of unknown function DUF558 [Geobacter sp. M21]
Length = 246
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 98/241 (40%), Gaps = 27/241 (11%)
Query: 51 GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVL 110
G V + G+ + HM +VLR+ VEL G G ++ + L V V
Sbjct: 13 GDSVTITGELYRHMARVLRIKEGSEVELIENGGARHRGTVEEVGAKKLTVRISAS---VA 69
Query: 111 PQHTQWNVFAAF--GTLKGGRADWLVEKCTELGAQSVTPL-----LTELHLQSRKIGDNG 163
P + + G KG + D +++KCTELG V + +LH GD
Sbjct: 70 PSAEEPGLRITLLQGMPKGEKLDLILQKCTELGVAEVVVFDAARSVVKLH------GDRS 123
Query: 164 FLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLV-----SQSKLAFVAIAEAT 218
+ Y + +A G +P + + G L V + KL E T
Sbjct: 124 AARLSRYEKIVQEAARQSGRHS------SPKVALGGTLAEVLADSSHEVKLLLYEGEEKT 177
Query: 219 PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
L + S ++VGPEG +EV + + AG T V LG LR ETA +A+L+
Sbjct: 178 TLHDCFGAVVAPKSVAVVVGPEGGLAPEEVRQALAAGFTPVTLGKRILRTETAGLAMLSI 237
Query: 279 L 279
L
Sbjct: 238 L 238
>gi|393719432|ref|ZP_10339359.1| 16S ribosomal RNA methyltransferase RsmE [Sphingomonas echinoides
ATCC 14820]
Length = 246
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 103/229 (44%), Gaps = 20/229 (8%)
Query: 45 PRFFSQG----GIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV 100
PR F + G +RV+G + ++ V+R+ T D V+LF+G G G + + L +
Sbjct: 13 PRLFVETPFGLGPLRVDGPQAHYLVSVMRMKTGDPVKLFDGASGEWLGVAASVGKRDLVL 72
Query: 101 VALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIG 160
+ L+ T +++ +K GR DW+ EK ELG + P+LT + R G
Sbjct: 73 DVTQKLREA---ETVPDLWLCAAPIKKGRIDWVAEKACELGVARLVPVLTRRTIVDRLNG 129
Query: 161 DNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLL-PLVSQSKLAFVAIAEATP 219
+ + +A G R L P+K+ LL + L F TP
Sbjct: 130 ER-------LRAHMIEAAEQCG--RTAVPALAEPVKLSALLRDWPADRALFFADETGGTP 180
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKI-VEAGATAVGLGPHRLR 267
+ A+ ++ ++ I++GPEG F + E I A A+GLGP LR
Sbjct: 181 ALAAMRAASGAAA--ILIGPEGGFDDDERAAIRAVPSAVAIGLGPRILR 227
>gi|257087179|ref|ZP_05581540.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|256995209|gb|EEU82511.1| conserved hypothetical protein [Enterococcus faecalis D6]
Length = 250
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 109/247 (44%), Gaps = 29/247 (11%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVEL-FNGKGGLIEGCIQRIDRTGL--DVVALE 104
+ + + +V + + H+ +V+R++ NDR L F K ++ ++ ID T + ++ E
Sbjct: 10 YQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVE-IDSTSVYFKEISKE 68
Query: 105 DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSV------TPLLTELHLQSRK 158
++ LP V A G KG + +W+V+K TELG T ++ H + R
Sbjct: 69 EMDKELP----IEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDH-KKRA 123
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA- 217
+ IA A R ++ K ++ VA E+
Sbjct: 124 AKEKRLQK-------IATEA-AEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESA 175
Query: 218 -----TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
+ L LS+ + + ++ GPEG F +E+ + ++AGA GLGP LR ETA
Sbjct: 176 RQGEKSQLAQVLSTCQPGARLCVLFGPEGGFAPQEIEQFLQAGAKLCGLGPRILRAETAP 235
Query: 273 IALLATL 279
+ LL+ +
Sbjct: 236 LYLLSAV 242
>gi|195998640|ref|XP_002109188.1| hypothetical protein TRIADDRAFT_52966 [Trichoplax adhaerens]
gi|190587312|gb|EDV27354.1| hypothetical protein TRIADDRAFT_52966 [Trichoplax adhaerens]
Length = 246
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 110/241 (45%), Gaps = 31/241 (12%)
Query: 50 QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLV 109
+ G V ++GD+ HM V+RL + VE+ NG+ L + RID + +A ++ V
Sbjct: 14 KNGRVALQGDQLHHMKNVMRLRVGETVEIINGRNQLAQA---RIDAYQGNQIAHVNIDQV 70
Query: 110 LPQ----HTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFL 165
L Q + N+ KG D ++EKCTELG ++ +L + ++G+
Sbjct: 71 LTQLVLDKPRINLIQPLIRSKG--LDLVIEKCTELG-------VSHFYLYASELGEISQF 121
Query: 166 SCNFYYGF--IANSAFVYGGQRLHEMVLNPPMKI--DGLLPLVSQSKLAFVAIAEATPLV 221
S IA SA G+ L+ P D L L QS + + + L
Sbjct: 122 SSARCKKLTEIAISAIKQCGR------LDLPTLTFADRLHNLKLQSNVHPICFGDTRHLD 175
Query: 222 TALSSSRNESS----GLIIVGPEGDFTEKEVNKIV-EAGATAVGLGPHRLRVETATIALL 276
A +S+ + +GPE F++KE+N + + GAT + + P LR ETA+I L
Sbjct: 176 NAQVGFTPQSTLAQCKTVCIGPEKGFSDKEINYLENQLGATGIKISPFILRSETASITLT 235
Query: 277 A 277
A
Sbjct: 236 A 236
>gi|297623572|ref|YP_003705006.1| hypothetical protein [Truepera radiovictrix DSM 17093]
gi|297164752|gb|ADI14463.1| protein of unknown function DUF558 [Truepera radiovictrix DSM
17093]
Length = 237
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 103/241 (42%), Gaps = 44/241 (18%)
Query: 58 GDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQ-- 115
G E H+ +VLR+ RV F+G G +G ++ + TGL V L+L P +
Sbjct: 20 GREAQHLAQVLRVRPGARVRAFDGAGLEADGTVREV--TGLRVT----LELGAPYAREVE 73
Query: 116 --WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGF 173
V A LKG + +V + TELGA P + SR+ D LS N
Sbjct: 74 AALRVTLAVALLKGDKLAEVVRRATELGAVGFRPFV------SRRC-DVRELSANKLARL 126
Query: 174 --IANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVA-----------IAEATPL 220
+A A G+ + PP+ L +S VA +A TP
Sbjct: 127 RRVAQEAAKQSGRSV-----VPPVAEAAPLAHLSLPAPTLVAHPSAPRTLGETLAALTPP 181
Query: 221 VTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
TAL+ ++ GPEG TE E+ + E GA + LG LR ETA +AL A L+
Sbjct: 182 PTALT---------VLTGPEGGLTEDELAALTERGAHPIRLGARILRAETAPVALTAALL 232
Query: 281 L 281
+
Sbjct: 233 I 233
>gi|313203702|ref|YP_004042359.1| hypothetical protein Palpr_1227 [Paludibacter propionicigenes WB4]
gi|312443018|gb|ADQ79374.1| protein of unknown function DUF558 [Paludibacter propionicigenes
WB4]
Length = 233
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 95/225 (42%), Gaps = 15/225 (6%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLP-QHTQWN 117
+E H KVLR+ D + + +G GG I + E K +L +
Sbjct: 18 EESKHAVKVLRMQVGDAISVVDGVGGFYNALISNPHPKHCE---FEIKKTILEFGKRDYK 74
Query: 118 VFAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIAN 176
+ A K R +W +EK TE+G +TP++ RKI L I +
Sbjct: 75 IHIAIAPTKNIERLEWFIEKATEIGIDQITPIICRF--SERKIVKAERLE-----KIIVS 127
Query: 177 SAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLII 236
+A + + +LNP D L+ + S+ F+A + + S LI+
Sbjct: 128 AA--KQSLKAYFPILNPLCTFDELINKHNASQ-KFIAHCYEEDKKLLQNEIQKSSDVLIL 184
Query: 237 VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
+GPEGDF+++EV + V LG RLR ETA + T+ +
Sbjct: 185 IGPEGDFSKEEVQSAILHDFIPVSLGESRLRTETAGVVACHTVAI 229
>gi|365157923|ref|ZP_09354167.1| RsmE family RNA methyltransferase [Bacillus smithii 7_3_47FAA]
gi|363622333|gb|EHL73499.1| RsmE family RNA methyltransferase [Bacillus smithii 7_3_47FAA]
Length = 252
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 102/233 (43%), Gaps = 13/233 (5%)
Query: 55 RVEGDEFWHMTKVLRLSTNDR-VELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQH 113
R++G++F H+++V+R+ D +F+ + + + +D D +K + +
Sbjct: 17 RIKGEDFHHLSRVMRMKAGDHFYAVFSDRQN--QTALAVLDEISSDCARATVVKWIRDEK 74
Query: 114 T-QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYG 172
V A G KG + + +++K TELGA S P + E + K + +
Sbjct: 75 ELPIQVTVASGLPKGDKLELIIQKGTELGASSFLPFMAERSIV--KWDEKKMHKKVVRWE 132
Query: 173 FIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP------LVTALSS 226
IA A QR + P+ I+ L + + A EA L +
Sbjct: 133 KIAKEA-AEQSQRTVIPEIYEPVSIEKLCEMADRYTWKLFAYEEAAKEGEHRQFYETLKN 191
Query: 227 SRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
+ + + LI GPEG F+++E + + E G GLGP LR ETA + L+ +
Sbjct: 192 VKQKDTLLIAFGPEGGFSQEEASLLSEKGFIPCGLGPRILRTETAPLYALSAI 244
>gi|343087502|ref|YP_004776797.1| ribosomal RNA small subunit methyltransferase E [Cyclobacterium
marinum DSM 745]
gi|342356036|gb|AEL28566.1| Ribosomal RNA small subunit methyltransferase E [Cyclobacterium
marinum DSM 745]
Length = 236
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 106/255 (41%), Gaps = 48/255 (18%)
Query: 51 GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVL 110
G + ++ E H+ KVLR + D V NGKG L I+ + + +E +L
Sbjct: 11 GDVFTLDSQESNHLGKVLRKNIGDTVLFTNGKGSLFTCQIEDNNPKKCRLKIVE--QLFT 68
Query: 111 PQHTQWNVFAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHLQSR----KIGDNGFL 165
P ++++ A K R +W++EK TE+G +T L T +SR ++
Sbjct: 69 PME-KFHIHLAIAPTKNMDRMEWMLEKITEIGFNEITFLKTAHIERSRLKLDRLQKKLVS 127
Query: 166 SCN--------------FYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAF 211
+C Y FI N AF HE F
Sbjct: 128 ACKQSFKTWLPDINPIVDYEKFITNPAF-----HAHE---------------------RF 161
Query: 212 VAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA 271
+A + ++ + S L+++GPEGDF+ E++ +++G LG HRLR ETA
Sbjct: 162 IAYVDKDNDQHLMNQASIGQSYLVLIGPEGDFSPGEISLAIDSGFKPSSLGKHRLRTETA 221
Query: 272 TIALLATLMLCSDSQ 286
+ + TL L + Q
Sbjct: 222 GLVAVHTLNLLNLGQ 236
>gi|77361513|ref|YP_341088.1| 16S ribosomal RNA methyltransferase RsmE [Pseudoalteromonas
haloplanktis TAC125]
gi|76876424|emb|CAI87646.1| putative RNA methyltransferase with a deep trefoil knot, RrmA and
YibK are structural paralogs [Pseudoalteromonas
haloplanktis TAC125]
Length = 244
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 117/253 (46%), Gaps = 33/253 (13%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+P + I V ++ D H+ +VLR+ + V +FNG+GG E + I+ T
Sbjct: 3 VPHIYQASSIALNTPVTLDDDAAGHIGRVLRMKVGEHVSIFNGEGG--EYLSEIIEVTKK 60
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLK---------GGRADWLVEKCTELGAQSVTPLL 149
+VV V+PQ Q N LK G + D+ ++K ELG +TP+
Sbjct: 61 NVV-------VMPQ--QLNTHDVESPLKIHLGQCVSRGDKMDFTIQKSVELGITEITPIF 111
Query: 150 TELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS-K 208
++ + +GD + + IA +A G+ V++PP+ + L S + K
Sbjct: 112 SQ-RCGVKLMGDR-LDKKHQQWQKIAIAAAEQSGRNFVP-VVHPPVDLKQWLAQQSAAIK 168
Query: 209 LAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRV 268
L AE + + ++ ++ +VGPEG FT++E+ + + + LGP LR
Sbjct: 169 LTLHPRAEHS--IKTITVPKDGVR--FLVGPEGGFTDEEMAQTKQQNFVDIRLGPRVLRT 224
Query: 269 ETATIALLATLML 281
ETA + +L+ L L
Sbjct: 225 ETAALTVLSALQL 237
>gi|433537535|ref|ZP_20494030.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
77221]
gi|432271300|gb|ELL26426.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
77221]
Length = 241
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 114/249 (45%), Gaps = 29/249 (11%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRF+ S G V + + H+ VLR+ N+ + LF+GKG + +++
Sbjct: 1 MPRFYLPENLSVGQTVALPDNIVRHLN-VLRVRPNENITLFDGKGKAHAAQLTVLEKRRA 59
Query: 99 DVVAL-EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
+ L ED + N+ G R D+ ++K ELG ++ P+++E + R
Sbjct: 60 EAEILHED---TTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCI-VR 115
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA 217
G+ + + ++ G + PP +LP++ + +E+
Sbjct: 116 LDGERAAKRLARWQEIVISACEQSGRNTV------PP-----VLPIIGYREALDKMPSES 164
Query: 218 TPLVTALSSSRN-----ESSGLII--VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
T L+ +++ +R SG I+ VGPEG +TE+E + EAG AV LG LR ET
Sbjct: 165 TKLIMSINRARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGFQAVTLGKRILRTET 224
Query: 271 ATIALLATL 279
A +A LA +
Sbjct: 225 APLAALAAM 233
>gi|29376497|ref|NP_815651.1| hypothetical protein EF1975 [Enterococcus faecalis V583]
gi|227519317|ref|ZP_03949366.1| protein of hypothetical function DUF558 [Enterococcus faecalis
TX0104]
gi|256964753|ref|ZP_05568924.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|257419655|ref|ZP_05596649.1| conserved hypothetical protein [Enterococcus faecalis T11]
gi|29343961|gb|AAO81721.1| conserved hypothetical protein TIGR00046 [Enterococcus faecalis
V583]
gi|227073246|gb|EEI11209.1| protein of hypothetical function DUF558 [Enterococcus faecalis
TX0104]
gi|256955249|gb|EEU71881.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|257161483|gb|EEU91443.1| conserved hypothetical protein [Enterococcus faecalis T11]
Length = 250
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 109/247 (44%), Gaps = 29/247 (11%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVEL-FNGKGGLIEGCIQRIDRTGL--DVVALE 104
+ + + +V + + H+ +V+R++ NDR L F K ++ ++ ID T + ++ E
Sbjct: 10 YQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVE-IDSTSVYFKEISKE 68
Query: 105 DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSV------TPLLTELHLQSRK 158
++ LP V A G KG + +W+V+K TELG T ++ H + R
Sbjct: 69 EMDKELP----IEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDH-KKRA 123
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA- 217
+ IA A R ++ K ++ VA E+
Sbjct: 124 AKEKRLQK-------IATEA-AEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESA 175
Query: 218 -----TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
+ L LS+ + + ++ GPEG F +E+ + ++AGA GLGP LR ETA
Sbjct: 176 KQGEKSQLAQVLSTCQPGARLCVLFGPEGGFAPQEIEQFLQAGAKLCGLGPRILRAETAP 235
Query: 273 IALLATL 279
+ LL+ +
Sbjct: 236 LYLLSVV 242
>gi|163795742|ref|ZP_02189707.1| hypothetical protein BAL199_07568 [alpha proteobacterium BAL199]
gi|159179038|gb|EDP63573.1| hypothetical protein BAL199_07568 [alpha proteobacterium BAL199]
Length = 253
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 102/226 (45%), Gaps = 25/226 (11%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
++G ++ +E + ++ VLRL + V LFNG+ G + RID G +L
Sbjct: 15 LAEGAVIGLESAQAHYLRSVLRLGPGEAVALFNGRDG---EWLARIDGIGKGWASLVVAN 71
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
PQ + +++ AF +K R D+ +K TELGA + P++T + R D L+
Sbjct: 72 QTHPQCPEPDLWLAFAPIKRARIDFTAQKATELGASLLWPVMTRHTMVDRVNTDR--LTA 129
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLP--------LVSQSKLAFVAIAEATP 219
N RL + P +D L+ L+ + IAEA
Sbjct: 130 NAIEA-------AEQSDRLTVPEVREPTSLDKLIAEWPEDRALLLCDESGTGLGIAEA-- 180
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPH 264
L A S R + ++GPEG F ++E++++ + TAVGLGP
Sbjct: 181 LAAAGPSVRRRAG--FVIGPEGGFAQEELDRLRKLPFVTAVGLGPR 224
>gi|410419130|ref|YP_006899579.1| hypothetical protein BN115_1337 [Bordetella bronchiseptica MO149]
gi|427820620|ref|ZP_18987683.1| conserved hypothetical protein [Bordetella bronchiseptica D445]
gi|408446425|emb|CCJ58093.1| conserved hypothetical protein [Bordetella bronchiseptica MO149]
gi|410571620|emb|CCN19853.1| conserved hypothetical protein [Bordetella bronchiseptica D445]
Length = 246
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 108/246 (43%), Gaps = 20/246 (8%)
Query: 44 IPRFFSQGGIV---RVEGDEFW--HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRF+ + RV E H +VLRL + LF+G GG ++ +
Sbjct: 3 LPRFYCDARLAPGERVALPEALAHHAVRVLRLRAGAALVLFDGAGGEYPATLEIEGKA-- 60
Query: 99 DVVALEDLKLVLPQHTQW--NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
A L +P+ + + G G + DW+VEK ELGA V+P+ Q
Sbjct: 61 ---AWAQLGAHVPREAELPGRITLVQGLPAGDKMDWVVEKAVELGAWRVSPIAA----QR 113
Query: 157 RKIGDNGFLSCN--FYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI 214
+ NG + ++ IA +A G R M ++ P + L + L +
Sbjct: 114 SVLQLNGARAEKRLAHWQRIAQAAAEQCG-RNRLMAVDAPQALAAWLAQAPGAALRLLCH 172
Query: 215 AEAT-PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
EA L AL+ ++VGPEG ++++E+ + AG AV GP LR ETA I
Sbjct: 173 PEAELDLAGALARHAAHDDICLLVGPEGGWSDEELEQARAAGVQAVRFGPRVLRTETAGI 232
Query: 274 ALLATL 279
AL+A +
Sbjct: 233 ALIAAV 238
>gi|268317477|ref|YP_003291196.1| hypothetical protein Rmar_1925 [Rhodothermus marinus DSM 4252]
gi|262335011|gb|ACY48808.1| protein of unknown function DUF558 [Rhodothermus marinus DSM 4252]
Length = 239
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 103/245 (42%), Gaps = 26/245 (10%)
Query: 50 QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLV 109
+ G VR+ DE H +VLR D V + +G GG ++ +DR G+ LE + V
Sbjct: 13 RDGWVRLPDDEAHHAVRVLRHRPGDEVIVVDGVGGWHRLRLELVDRQGVQGRVLETRRDV 72
Query: 110 LPQHTQWNVFAAFGTLK-GGRADWLVEKCTELGAQSVTPLLT----ELHLQ---SRKIGD 161
+ + LK R + +EK ELG ++ PLLT H + +R++
Sbjct: 73 --GEPPYRLTIGLALLKQTARFETFLEKAVELGVAAIVPLLTARTERTHFRPERARRLLI 130
Query: 162 NGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLV 221
C + ++ + E++ +P L L+ + P+
Sbjct: 131 AAMKQCGR-----SRLPLLHAPRPFAEVLHDP-----AALRLLCHEQ----PDRPRHPIH 176
Query: 222 TALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
L R L++VGPEG FT EV + AG V LG RLR ETA + + ++
Sbjct: 177 ELLR--RPVGDALVLVGPEGGFTSDEVLQAEAAGFQTVSLGARRLRAETAALVAASAFLI 234
Query: 282 CSDSQ 286
C D +
Sbjct: 235 CQDHR 239
>gi|150390795|ref|YP_001320844.1| 16S ribosomal RNA methyltransferase RsmE [Alkaliphilus
metalliredigens QYMF]
gi|149950657|gb|ABR49185.1| protein of unknown function DUF558 [Alkaliphilus metalliredigens
QYMF]
Length = 254
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 119/262 (45%), Gaps = 46/262 (17%)
Query: 46 RFF-------SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
RFF Q + + GD+ H+ KVLRL D VE+ +G+ ++ I R +
Sbjct: 3 RFFVVPSQVNQQARTISIVGDDVKHIGKVLRLVVGDLVEVCDGQ------ALEYIGR--I 54
Query: 99 DVVALEDLKLVLPQHTQWNVFAA--------FGTLKGGRADWLVEKCTELGAQSVTPLLT 150
D ++ E + L + + Q N+F G K + + +++K TE+G + P++T
Sbjct: 55 DEISKEQVTLSIEK--QENIFTEPPIQVRLYQGIPKATKMELIIQKTTEMGISDIIPVMT 112
Query: 151 E---LHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQ----RLHEMVLNPPMKIDGLLPL 203
+ + + K + + IA+ A + R+H PM L
Sbjct: 113 DRTIVQFNNEKDREKKVER----WQKIADEASKQSKRGKIPRIH-----IPMTYTKALEA 163
Query: 204 VSQSKLAFVAI-AEATPLVTALSSSRNESSGL----IIVGPEGDFTEKEVNKIVEAGATA 258
+++ L +A E T + AL +S E + + I +GPEG FT KE+ K + +
Sbjct: 164 CNENDLNVLAYEKEKTMGLKALIASLVEITEVKSIGIWIGPEGGFTGKEIEKALSHDVRS 223
Query: 259 VGLGPHRLRVETATIALLATLM 280
+ LGP LR ETA A+L+ LM
Sbjct: 224 ITLGPRILRTETAGFAVLSMLM 245
>gi|126665848|ref|ZP_01736829.1| hypothetical protein MELB17_04747 [Marinobacter sp. ELB17]
gi|126629782|gb|EBA00399.1| hypothetical protein MELB17_04747 [Marinobacter sp. ELB17]
Length = 244
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 106/252 (42%), Gaps = 32/252 (12%)
Query: 44 IPRFFSQ-----GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
IPR ++ G +++ + H+ +VLR+ + LFNG G I + +
Sbjct: 3 IPRIYTDTPLQAGADAQLDDNAAQHVGRVLRMQPGQALSLFNGDGQDYRALIASASKKNV 62
Query: 99 DVVALED--------LKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLT 150
V + L++VL Q KG R D+ V+K TE+G + PL T
Sbjct: 63 TVQVEQPTANSSESALEIVLGQTLS----------KGDRMDYAVQKATEMGVTRIVPLST 112
Query: 151 ELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLA 210
E R GD + + ++A G R+ +++ P M I L + +
Sbjct: 113 E-RCDVRLKGDREDKRLSHWRSVAISAAEQCGRARVPDIL--PVMNITEWLEYSQRCDVR 169
Query: 211 FVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
V +L S +S +++GPEG + E+ + ++G + LGP LR ET
Sbjct: 170 LVLHHRTE---QSLDSLAKPNSVALMIGPEGGLSADEIAQAEKSGFLPIALGPRVLRTET 226
Query: 271 ATIALLATLMLC 282
A +A +A LC
Sbjct: 227 APVAAMA---LC 235
>gi|419719127|ref|ZP_14246414.1| RNA methyltransferase, RsmE family [Lachnoanaerobaculum saburreum
F0468]
gi|383304645|gb|EIC96043.1| RNA methyltransferase, RsmE family [Lachnoanaerobaculum saburreum
F0468]
Length = 245
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 106/232 (45%), Gaps = 15/232 (6%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQ 115
+ G + H+ VLR+ + + L + KG C +I+ D V L+ L+ + +
Sbjct: 18 ISGSDVNHIVNVLRMKIGEEL-LISVKGDWDYLC--KIEEIENDRVNLKLLESMEQRELP 74
Query: 116 WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
+ G K + + +++K TELG + P+ T + KI + + + IA
Sbjct: 75 IKLTLLQGIPKSDKIEMIIQKATELGVSEIIPVKTNRVVV--KIDEKKTQAKVNRWNAIA 132
Query: 176 NSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFV------AIAEATPLVTALSSSRN 229
SA + + VLNP ID L +V + + I + ++ +L S N
Sbjct: 133 QSAAKQSKRSIIPKVLNPQT-IDNALEIVKDYGVKLLPYENADGIKKTKDILNSLDSKNN 191
Query: 230 ESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
+ + +GPEG F E EV K ++G + LG LR ETA +ALL+ +M+
Sbjct: 192 IA---VFIGPEGGFEEAEVKKSTDSGFEVITLGKRILRTETAGLALLSNIMI 240
>gi|427824404|ref|ZP_18991466.1| conserved hypothetical protein [Bordetella bronchiseptica Bbr77]
gi|410589669|emb|CCN04742.1| conserved hypothetical protein [Bordetella bronchiseptica Bbr77]
Length = 246
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 108/246 (43%), Gaps = 20/246 (8%)
Query: 44 IPRFFSQGGIV---RVEGDEF--WHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRF+ + RV E H +VLRL + LF+G GG ++ +
Sbjct: 3 LPRFYCDARLAPGERVALPEALAHHAVRVLRLRAGAALVLFDGAGGEYPATLEIEGKA-- 60
Query: 99 DVVALEDLKLVLPQHTQW--NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
A L +P+ + + G G + DW+VEK ELGA V+P+ Q
Sbjct: 61 ---AWAQLGAHVPREAELPGRITLVQGLPAGDKMDWVVEKAVELGAWRVSPIAA----QR 113
Query: 157 RKIGDNGFLSCN--FYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI 214
+ NG + ++ IA +A G R M ++ P + L + L +
Sbjct: 114 SVLQLNGARAEKRLAHWQRIAQAAAEQCG-RNRLMAVDAPQALAAWLAQAPGAALRLLCH 172
Query: 215 AEAT-PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
EA L AL+ ++VGPEG ++++E+ + AG AV GP LR ETA I
Sbjct: 173 PEAERDLAGALARHAAHDDICLLVGPEGGWSDEELEQARAAGVQAVRFGPRVLRTETAGI 232
Query: 274 ALLATL 279
AL+A +
Sbjct: 233 ALIAAV 238
>gi|402820362|ref|ZP_10869929.1| hypothetical protein IMCC14465_11630 [alpha proteobacterium
IMCC14465]
gi|402511105|gb|EJW21367.1| hypothetical protein IMCC14465_11630 [alpha proteobacterium
IMCC14465]
Length = 272
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 116/268 (43%), Gaps = 36/268 (13%)
Query: 38 NQSRGGIPRFFSQ----GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRI 93
N G I + S+ G + D+ ++ V+R +D V +FNG+ G I ++
Sbjct: 6 NHKIGKIRLYVSEDLAAGQNFALNKDQHHYLRNVMRCQIDDPVLIFNGRDGEWLATISQL 65
Query: 94 DRTGLDVVALEDLKLVLPQHTQW----------NVFAAFGTLKGGRADWLVEKCTELGAQ 143
D+ +V ++ P ++ F +K R D++V+K TE+GA
Sbjct: 66 DKKMALLVVQSQTRVQTPTKNSAHIPLSDIQASDIQVLFAPVKKARLDYMVQKATEMGAS 125
Query: 144 SVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPL 203
S+ P++T ++R D L N LH L+ M ++ L
Sbjct: 126 SLMPVMTHYTQKARLNYDR--LKANMVEA-------AEQCNLLHVPALHEAMDLEQALES 176
Query: 204 VSQ---SKLAFVAIAEATPLVT-----ALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAG 255
+SQ S+ A P +T +L +N++ I++GPEG F+ +E ++
Sbjct: 177 LSQNTASRHVVFCDEGAGPSLTPDMRKSLEDLKNQAVA-ILIGPEGGFSPEERRILLARP 235
Query: 256 AT-AVGLGPHRLRVETATIALLATLMLC 282
T A+ LGP LR +T AL+A L LC
Sbjct: 236 DTLAISLGPRILRADT---ALVAALSLC 260
>gi|254246356|ref|ZP_04939677.1| hypothetical protein BCPG_01097 [Burkholderia cenocepacia PC184]
gi|124871132|gb|EAY62848.1| hypothetical protein BCPG_01097 [Burkholderia cenocepacia PC184]
Length = 267
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 102/238 (42%), Gaps = 15/238 (6%)
Query: 42 GGIPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRT 96
+PRFF + + + D H+ +VLRL D + LF+G GG + +D+
Sbjct: 20 AAVPRFFVDAALRADAPLALPADVARHV-QVLRLQPGDVLALFDGTGGQYRARLVEVDKR 78
Query: 97 GLDVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHL 154
AL + P + + V A G G + DW++EK ELG +V PL T +
Sbjct: 79 S----ALVQVDTFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGV 134
Query: 155 QSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEM--VLNPPMKIDGLLPLVSQSKLAFV 212
+ G+ + G + S G R+ ++ V +D L + +L +
Sbjct: 135 -VKLSGERADKRVAHWRGVVRASCEQCGRNRVPDVAAVAGFNAWLDALPAAPADGELRLL 193
Query: 213 AIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
A+ +L + ++ +++GPEG + E + G TA+ LGP LR ET
Sbjct: 194 LSPRASSPFASLPDAPPAATVTLLIGPEGGLSPDEEHAARARGFTALSLGPRVLRTET 251
>gi|15677755|ref|NP_274919.1| 16S ribosomal RNA methyltransferase RsmE [Neisseria meningitidis
MC58]
gi|385852010|ref|YP_005898525.1| hypothetical protein NMBM04240196_1862 [Neisseria meningitidis
M04-240196]
gi|385853973|ref|YP_005900487.1| hypothetical protein NMBH4476_1866 [Neisseria meningitidis H44/76]
gi|416184931|ref|ZP_11613183.1| hypothetical protein TIGR00046 [Neisseria meningitidis M13399]
gi|416198857|ref|ZP_11619224.1| hypothetical protein TIGR00046 [Neisseria meningitidis CU385]
gi|416214756|ref|ZP_11623050.1| hypothetical protein TIGR00046 [Neisseria meningitidis M01-240013]
gi|421555644|ref|ZP_16001571.1| 16S rRNA methyltransferase RsmE [Neisseria meningitidis 98008]
gi|421561948|ref|ZP_16007785.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
NM2657]
gi|427826573|ref|ZP_18993623.1| RNA methyltransferase family protein [Neisseria meningitidis
H44/76]
gi|433465899|ref|ZP_20423369.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
NM422]
gi|433489093|ref|ZP_20446242.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
M13255]
gi|433491272|ref|ZP_20448384.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
NM418]
gi|433505728|ref|ZP_20462659.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
9506]
gi|433507909|ref|ZP_20464805.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
9757]
gi|433510074|ref|ZP_20466930.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
12888]
gi|433512136|ref|ZP_20468950.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
4119]
gi|7227182|gb|AAF42254.1| conserved hypothetical protein [Neisseria meningitidis MC58]
gi|254670885|emb|CBA07409.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
gi|316985547|gb|EFV64494.1| RNA methyltransferase family protein [Neisseria meningitidis
H44/76]
gi|325133384|gb|EGC56048.1| hypothetical protein TIGR00046 [Neisseria meningitidis M13399]
gi|325139579|gb|EGC62119.1| hypothetical protein TIGR00046 [Neisseria meningitidis CU385]
gi|325143638|gb|EGC65957.1| hypothetical protein TIGR00046 [Neisseria meningitidis M01-240013]
gi|325200977|gb|ADY96432.1| conserved hypothetical protein TIGR00046 [Neisseria meningitidis
H44/76]
gi|325206833|gb|ADZ02286.1| conserved hypothetical protein TIGR00046 [Neisseria meningitidis
M04-240196]
gi|402329104|gb|EJU64466.1| 16S rRNA methyltransferase RsmE [Neisseria meningitidis 98008]
gi|402336333|gb|EJU71594.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
NM2657]
gi|432200596|gb|ELK56686.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
NM422]
gi|432221089|gb|ELK76904.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
M13255]
gi|432225406|gb|ELK81149.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
NM418]
gi|432239119|gb|ELK94678.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
9757]
gi|432239213|gb|ELK94771.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
9506]
gi|432244809|gb|ELL00291.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
12888]
gi|432245293|gb|ELL00764.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
4119]
Length = 241
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 113/247 (45%), Gaps = 24/247 (9%)
Query: 41 RGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV 100
R +P S G V + + H+ VLR+ N+ + LF+GKG + +++ +
Sbjct: 3 RFHLPENLSVGQTVALPDNIVRHLN-VLRVRPNENITLFDGKGKAHAARLTVLEKRRAEA 61
Query: 101 VAL-EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
L ED + N+ G R D+ ++K ELG ++ P+++E + R
Sbjct: 62 EILHED---TTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCI-VRLD 117
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
G+ + + ++ G + PP +LP++ + +E+T
Sbjct: 118 GERAAKRLARWQEIVISACEQSGRNTV------PP-----VLPIIGYREALDKMPSESTK 166
Query: 220 LVTALSSSRN-----ESSGLII--VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
L+ +++ +R + SG I+ VGPEG +TE+E + EAG AV LG LR ETA
Sbjct: 167 LIMSINRARKLGDIRQPSGAIVFMVGPEGGWTEQEEQQAFEAGFQAVTLGKRILRTETAP 226
Query: 273 IALLATL 279
+A LA +
Sbjct: 227 LAALAAM 233
>gi|381188755|ref|ZP_09896315.1| ribosomal RNA small subunit methyltransferase E [Flavobacterium
frigoris PS1]
gi|379649393|gb|EIA07968.1| ribosomal RNA small subunit methyltransferase E [Flavobacterium
frigoris PS1]
Length = 235
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 95/219 (43%), Gaps = 14/219 (6%)
Query: 57 EGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQ-HTQ 115
+ +E H+ KVLR +D + + NG G L E I + V + K P+ H
Sbjct: 19 DKEESKHIIKVLRKKDSDILFVTNGSGYLFETEITLASDSKCTVRVISFEKKPTPKFHLH 78
Query: 116 WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
A T R +W +EK TE+G +TP++ + RK+ N + I
Sbjct: 79 ---LAVAPTKMNDRYEWFLEKATEIGISEITPIICDR--SERKVIKND------RFDKII 127
Query: 176 NSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLI 235
+A L+ LN + L ++ L +A E T T S + + +
Sbjct: 128 LTAMKQSND-LYLPKLNEAITFKEFLKRKNEG-LQLIAHCEETDKKTLKSVLKPNENVTL 185
Query: 236 IVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274
++GPEGDF+EKE+ +E V LG RLR ETA I
Sbjct: 186 LIGPEGDFSEKEIALALENKYIPVSLGNTRLRTETAAIV 224
>gi|416164769|ref|ZP_11607276.1| hypothetical protein TIGR00046 [Neisseria meningitidis N1568]
gi|433474247|ref|ZP_20431601.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
97021]
gi|433482673|ref|ZP_20439927.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
2006087]
gi|433484680|ref|ZP_20441898.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
2002038]
gi|433486921|ref|ZP_20444110.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
97014]
gi|325127441|gb|EGC50371.1| hypothetical protein TIGR00046 [Neisseria meningitidis N1568]
gi|432207565|gb|ELK63554.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
97021]
gi|432214542|gb|ELK70441.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
2006087]
gi|432219553|gb|ELK75392.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
2002038]
gi|432220520|gb|ELK76340.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
97014]
Length = 241
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 113/247 (45%), Gaps = 24/247 (9%)
Query: 41 RGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV 100
R +P S G V + + H+ VLR+ N+ + LF+GKG + +++ +
Sbjct: 3 RFHLPENLSVGQTVALPDNIVRHLN-VLRVRPNENITLFDGKGKAHAARLTVLEKRRAEA 61
Query: 101 VAL-EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
L ED + N+ G R D+ ++K ELG ++ P+++E + R
Sbjct: 62 EILHED---TTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCI-VRLD 117
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
G+ + + ++ G + PP +LP++ + +E+T
Sbjct: 118 GERAAKRLARWQEIVISACEQSGRNTV------PP-----VLPIIGYREALDKMPSESTK 166
Query: 220 LVTALSSSRN-----ESSGLII--VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
L+ +++ +R + SG I+ VGPEG +TE+E + EAG AV LG LR ETA
Sbjct: 167 LIMSINRARKLADIRQPSGAIVFMVGPEGGWTEQEEQQAFEAGFQAVTLGKRILRTETAP 226
Query: 273 IALLATL 279
+A LA +
Sbjct: 227 LAALAAM 233
>gi|148253212|ref|YP_001237797.1| 16S ribosomal RNA methyltransferase RsmE [Bradyrhizobium sp. BTAi1]
gi|146405385|gb|ABQ33891.1| hypothetical protein BBta_1682 [Bradyrhizobium sp. BTAi1]
Length = 250
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 113/244 (46%), Gaps = 23/244 (9%)
Query: 45 PRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PR + G V ++ D+ ++ VLRL RV +FNG+ G +G I R D
Sbjct: 9 PRLYVDAPLQHGAHVELDRDQSNYLGNVLRLGAGGRVLVFNGRDGEWQGLIG--GRKRPD 66
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
+ +E PQ ++ F LK R D++V+K E+G S+ P++T SR
Sbjct: 67 SLTIE--HRTRPQDRLADLAYVFAPLKHARLDYMVQKAVEMGVSSLAPVITRHTQVSRVN 124
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
G+ + N + +A G L E+ P+ ++ L +L V EA
Sbjct: 125 GER--MRAN-----VIEAAEQCGILSLAEV--REPVSLERFLAQRPPDRL-LVFCDEAAD 174
Query: 220 LVTALSSSR--NESSGL-IIVGPEGDFTEKEVNKIV-EAGATAVGLGPHRLRVETATIAL 275
+ L + R ++ +G+ +++GPEG F +E ++ + V LGP LR +TA +A
Sbjct: 175 VADPLQALRGGSDYAGIDLLIGPEGGFASEERELLLRQPLVLRVALGPRILRADTAGVAA 234
Query: 276 LATL 279
LA +
Sbjct: 235 LALI 238
>gi|225012984|ref|ZP_03703401.1| protein of unknown function DUF558 [Flavobacteria bacterium
MS024-2A]
gi|225002883|gb|EEG40862.1| protein of unknown function DUF558 [Flavobacteria bacterium
MS024-2A]
Length = 239
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 96/234 (41%), Gaps = 18/234 (7%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
+E H+ KVLR S+ + + + NG G G + + + + + +H
Sbjct: 21 EESKHIAKVLRKSSGETITVTNGSGLEWTGTLTFVSPNKTIAQIKKSFQHLEKKHQIHLA 80
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSA 178
A T R +W++EK TELG S+TP+L + H + + I F
Sbjct: 81 IAP--TKNNSRMEWMLEKLTELGIASITPVLCD-HSERKIIKKERF-----------EKI 126
Query: 179 FVYGGQRLHEMVL---NPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLI 235
V G ++ L N PM + ++ F+A E P + + + +
Sbjct: 127 IVAGLKQAQHFFLPKINDPMSFSKFIATPEFDQI-FIAHCEDQPKQRLIDIPLSGTQICL 185
Query: 236 IVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSDSQQMP 289
++GPEGDF+ E+N ++ + LG R R ETA + TL + P
Sbjct: 186 MIGPEGDFSPSEINAAIQKEIIPISLGNQRFRTETAGLLGCHTLFIKQQQNTNP 239
>gi|385855937|ref|YP_005902450.1| hypothetical protein NMBM01240355_1855 [Neisseria meningitidis
M01-240355]
gi|325204878|gb|ADZ00332.1| conserved hypothetical protein TIGR00046 [Neisseria meningitidis
M01-240355]
Length = 241
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 114/249 (45%), Gaps = 29/249 (11%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRF+ S G V + + H+ VLR+ N+ + LF+GKG + +++
Sbjct: 1 MPRFYLPENLSVGQTVALPDNIVRHLN-VLRVRPNENITLFDGKGKAHAAQLTVLEKRRA 59
Query: 99 DVVAL-EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
+ L ED + N+ G R D+ ++K ELG ++ P+++E + R
Sbjct: 60 EAEILHED---TTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCI-VR 115
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA 217
G+ + + ++ G + PP +LP++ + +E+
Sbjct: 116 LDGERAAKRLARWQEIVISACEQSGRNTV------PP-----VLPIIGYREALDKMPSES 164
Query: 218 TPLVTALSSSRN-----ESSGLII--VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
T L+ +++ +R SG I+ VGPEG +TE+E + EAG AV LG LR ET
Sbjct: 165 TKLIMSINRARKLADIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGFQAVTLGKRILRTET 224
Query: 271 ATIALLATL 279
A +A LA +
Sbjct: 225 APLAALAAM 233
>gi|307287880|ref|ZP_07567913.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0109]
gi|306501025|gb|EFM70332.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0109]
Length = 251
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 110/247 (44%), Gaps = 29/247 (11%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVEL-FNGKGGLIEGCIQRIDRTGL--DVVALE 104
+ + + +V + + H+ +V+R++ NDR L F K ++ ++ ID T + ++ E
Sbjct: 5 YQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVE-IDSTSVYFKEISKE 63
Query: 105 DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQ------SVTPLLTELHLQSRK 158
++ LP V A G KG + +W+V+K TELG + T ++ H + R
Sbjct: 64 EMDKELP----IEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDH-KKRA 118
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA- 217
+ IA A R ++ K ++ VA E+
Sbjct: 119 AKEKRLQK-------IATEA-AEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESA 170
Query: 218 -----TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
+ L LS+ + + ++ GPEG F +E+ + ++AGA GLGP LR ETA
Sbjct: 171 KQGEKSQLAQVLSTCQPGARLCVLFGPEGGFAPQEIEQFLQAGAKLCGLGPRILRAETAP 230
Query: 273 IALLATL 279
+ LL+ +
Sbjct: 231 LYLLSAV 237
>gi|422719466|ref|ZP_16776107.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0017]
gi|422741847|ref|ZP_16795869.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX2141]
gi|315033292|gb|EFT45224.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0017]
gi|315143405|gb|EFT87421.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX2141]
Length = 245
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 110/247 (44%), Gaps = 29/247 (11%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVEL-FNGKGGLIEGCIQRIDRTGL--DVVALE 104
+ + + +V + + H+ +V+R++ NDR L F K ++ ++ ID T + ++ E
Sbjct: 5 YQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVE-IDSTSVYFKEISKE 63
Query: 105 DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQ------SVTPLLTELHLQSRK 158
++ LP V A G KG + +W+V+K TELG + T ++ H + R
Sbjct: 64 EMDKELP----IEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDH-KKRA 118
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA- 217
+ IA A R ++ K ++ VA E+
Sbjct: 119 AKEKRLQK-------IATEA-AEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESA 170
Query: 218 -----TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
+ L LS+ + + ++ GPEG F +E+ + ++AGA GLGP LR ETA
Sbjct: 171 KQGEKSQLAQVLSTCQPGACLCVLFGPEGGFAPQEIEQFLQAGAKLCGLGPRILRAETAP 230
Query: 273 IALLATL 279
+ LL+ +
Sbjct: 231 LYLLSAV 237
>gi|422724017|ref|ZP_16780507.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX2137]
gi|424672844|ref|ZP_18109787.1| RNA methyltransferase, RsmE family [Enterococcus faecalis 599]
gi|315025980|gb|EFT37912.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX2137]
gi|402353350|gb|EJU88182.1| RNA methyltransferase, RsmE family [Enterococcus faecalis 599]
Length = 245
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 110/247 (44%), Gaps = 29/247 (11%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVEL-FNGKGGLIEGCIQRIDRTGL--DVVALE 104
+ + + +V + + H+ +V+R++ NDR L F K ++ ++ ID T + ++ E
Sbjct: 5 YQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVE-IDSTSVYFKEISKE 63
Query: 105 DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQ------SVTPLLTELHLQSRK 158
++ LP V A G KG + +W+V+K TELG + T ++ H + R
Sbjct: 64 EMDKELP----IEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDH-KKRA 118
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA- 217
+ IA A R ++ K ++ VA E+
Sbjct: 119 AKEKRLQK-------IATEA-AEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESA 170
Query: 218 -----TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
+ L LS+ + + ++ GPEG F +E+ + ++AGA GLGP LR ETA
Sbjct: 171 RQGEKSQLAQVLSTCQPGARLCVLFGPEGGFAPQEIEQFLQAGAKLCGLGPRILRAETAP 230
Query: 273 IALLATL 279
+ LL+ +
Sbjct: 231 LYLLSAV 237
>gi|169815197|gb|ACA89780.1| protein of unknown function DUF558 [Burkholderia cenocepacia MC0-3]
Length = 262
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 102/236 (43%), Gaps = 15/236 (6%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF + + + D H+ +VLRL D + LF+G GG + +D+
Sbjct: 17 VPRFFVDAALRADAPLALPADVARHV-QVLRLQPGDVLALFDGTGGQYRARLVEVDKRS- 74
Query: 99 DVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
AL + P + + V A G G + DW++EK ELG +V PL T +
Sbjct: 75 ---ALVQVDTFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGV-V 130
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEM--VLNPPMKIDGLLPLVSQSKLAFVAI 214
+ G+ + G + S G R+ ++ V +D L + +L +
Sbjct: 131 KLSGERADKRVAHWRGVVRASCEQCGRNRVPDVAAVAGFNAWLDALPAAPADGELRLLLS 190
Query: 215 AEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
A+ +L + ++ +++GPEG + E + G TA+ LGP LR ET
Sbjct: 191 PRASSPFASLPDAPPAATVTLLIGPEGGLSPDEEHAARARGFTALSLGPRVLRTET 246
>gi|418291320|ref|ZP_12903346.1| hypothetical protein TIGR00046 [Neisseria meningitidis NM220]
gi|372200066|gb|EHP14201.1| hypothetical protein TIGR00046 [Neisseria meningitidis NM220]
Length = 241
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 114/249 (45%), Gaps = 29/249 (11%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRF+ S G V + + H+ VLR+ N+ + LF+GKG + +++
Sbjct: 1 MPRFYLPENLSVGQTVALPDNIVRHLN-VLRVRPNENITLFDGKGKAHAARLTVLEKRRA 59
Query: 99 DVVAL-EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
+ L ED + N+ G R D+ ++K ELG ++ P+++E + R
Sbjct: 60 EAEILHED---TTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCI-VR 115
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA 217
G+ + + ++ G + PP +LP++ + +E+
Sbjct: 116 LDGERAAKRLARWQEIVISACEQSGRNTV------PP-----VLPIIGYREALDKMPSES 164
Query: 218 TPLVTALSSSRN-----ESSGLII--VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
T L+ +++ +R SG I+ VGPEG +TE+E + EAG AV LG LR ET
Sbjct: 165 TKLIMSINRARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGFQAVTLGKRILRTET 224
Query: 271 ATIALLATL 279
A +A LA +
Sbjct: 225 APLAALAAM 233
>gi|398834859|ref|ZP_10592259.1| RNA methyltransferase, RsmE family [Herbaspirillum sp. YR522]
gi|398219938|gb|EJN06401.1| RNA methyltransferase, RsmE family [Herbaspirillum sp. YR522]
Length = 241
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 99/236 (41%), Gaps = 20/236 (8%)
Query: 44 IPRFFSQG----GIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRID--RTG 97
+PRFF G + H VLRL + V LFNG+GG + I+ R
Sbjct: 1 MPRFFCPQPLAIGATLPLPEHVAHHVHVLRLQPGEHVTLFNGEGGEYVATLTSIEKRRAQ 60
Query: 98 LDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
++V + LP + + A +G + DW+VEK ELG ++ PL ++ + R
Sbjct: 61 VEVKTFSPREAELP----YALVLAQALPEGSKMDWIVEKAVELGVTAIQPLASQRCV-VR 115
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLA---FVAI 214
G+ + G + +A G RL + + + QS L ++
Sbjct: 116 LSGERADKKQAHWDGIVQAAAEQSGRNRLPHLA-----PLADFRRWIGQSDLHRRILLSP 170
Query: 215 AEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
PL +A + + ++VGPEG F ++E GA + +GP LR ET
Sbjct: 171 RGQQPL-SAWARHHPPQAVTVLVGPEGGFNDEEEQLACAQGALMLSMGPRVLRTET 225
>gi|352105559|ref|ZP_08960874.1| hypothetical protein HAL1_16351 [Halomonas sp. HAL1]
gi|350598432|gb|EHA14552.1| hypothetical protein HAL1_16351 [Halomonas sp. HAL1]
Length = 258
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 115/257 (44%), Gaps = 19/257 (7%)
Query: 30 SSSSSDYANQSRGGIPRFFSQGGIVRVEGDEFW-------HMTKVLRLSTNDRVELFNGK 82
++ ++D+ Q G +PR + + V G E H+T+VLR+ + LF+G+
Sbjct: 7 ATHAADWYAQ-HGKMPRLYVP--VDFVAGKELALPEGPARHVTRVLRMGEGTPLVLFDGQ 63
Query: 83 GGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGA 142
G +E ++ +D + +A + + + +V KG R D+ ++K ELG
Sbjct: 64 G--LEAGVRLVDVSRKQTLARVEAVWLGSGESPLSVHLGQAISKGDRMDYAIQKAVELGV 121
Query: 143 QSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLP 202
++TPL TE R GD ++ +A SA G+ + V +PPM + L
Sbjct: 122 AAITPLYTE-RGDVRLKGDREDKKLA-HWQAVAASACEQSGRAVVPPV-HPPMALQAWLA 178
Query: 203 LVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLG 262
+ + +A A +S +++GPEG +E ++ A T + LG
Sbjct: 179 ERQEPLRLMLHLATGN----AFDRQDRPASVALLIGPEGGLSESDIAAAQVATFTPLTLG 234
Query: 263 PHRLRVETATIALLATL 279
P LR ETA I L+ L
Sbjct: 235 PRVLRTETAPIVALSLL 251
>gi|390168648|ref|ZP_10220604.1| 16S ribosomal RNA methyltransferase RsmE [Sphingobium indicum B90A]
gi|389588762|gb|EIM66801.1| 16S ribosomal RNA methyltransferase RsmE [Sphingobium indicum B90A]
Length = 253
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 102/235 (43%), Gaps = 16/235 (6%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
+G V V+G+ ++ V+R+ +D V LF+G+ G E + D D+V LE +
Sbjct: 26 LGEGVSVPVDGNPAHYLISVMRVKADDIVLLFDGRSG--EWAAKARDIRKRDLV-LEVVS 82
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
P + + ++ GR D + EK ELG + P+LT R + D L+
Sbjct: 83 RTRPPEDVPDFWLCCAPIRKGRIDLVAEKACELGVARLQPVLTR-----RAVVDK--LNL 135
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAE-ATPLVTALSS 226
+ + + +A G L E L K+D LL + F A PL L +
Sbjct: 136 DRLHAHLVEAAEQCGRTALPE--LGQMAKLDALLRDWPDGRWLFFADESGGEPLADTLKA 193
Query: 227 SRNESSGLIIVGPEGDFTEKEVNKIVE-AGATAVGLGPHRLRVETATIALLATLM 280
++ LI GPEG F E I A A V LGP LR ETA IA + M
Sbjct: 194 HPGPAAFLI--GPEGGFDPAEREAIRRVAKAIPVSLGPRILRAETAAIAATSAWM 246
>gi|105891901|gb|ABF75066.1| 16S rRNA m(3)U-1498 methyltransferase [Burkholderia cenocepacia AU
1054]
gi|116646747|gb|ABK07388.1| protein of unknown function DUF558 [Burkholderia cenocepacia
HI2424]
Length = 262
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 102/236 (43%), Gaps = 15/236 (6%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF + + + D H+ +VLRL D + LF+G GG + +D+
Sbjct: 17 VPRFFVDAALRADATLALPADVARHV-QVLRLQPGDVLALFDGTGGQYRARLVEVDKRS- 74
Query: 99 DVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
AL + P + + V A G G + DW++EK ELG +V PL T +
Sbjct: 75 ---ALVQVDTFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGV-V 130
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEM--VLNPPMKIDGLLPLVSQSKLAFVAI 214
+ G+ + G + S G R+ ++ V +D L + +L +
Sbjct: 131 KLSGERADKRVAHWRGVVRASCEQCGRNRVPDVAPVAGFNAWLDALPAAPADGELRLLLS 190
Query: 215 AEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
A+ +L + ++ +++GPEG + E + G TA+ LGP LR ET
Sbjct: 191 PRASSPFASLPDAPPAAAVTLLIGPEGGLSPDEEHAARARGFTALSLGPRVLRTET 246
>gi|288939950|ref|YP_003442190.1| hypothetical protein Alvin_0191 [Allochromatium vinosum DSM 180]
gi|288895322|gb|ADC61158.1| protein of unknown function DUF558 [Allochromatium vinosum DSM 180]
Length = 248
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 96/221 (43%), Gaps = 13/221 (5%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRI--DRTGLDVVALEDLKLVLPQHTQWNVFA 120
H +VLRL + + LFNG G C+ DR + V + D +L ++ ++
Sbjct: 27 HAVQVLRLERDAPLVLFNGDGHDYSACLVEPGRDRVRVLVESRGDPEL----ESRLDIHL 82
Query: 121 AFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFV 180
A G KG R D+ ++K ELG +TPL T Q R G + G + +
Sbjct: 83 ALGISKGERMDFAIQKAVELGVTRITPLFTR-RAQVRLDGARLDKRLEHWQGVVVAACEQ 141
Query: 181 YGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVT-ALSSSRNESSGL-IIVG 238
G +RL L P ++ L A + + PL AL + SGL +++G
Sbjct: 142 SGRRRL--PTLEPAGGLEAWLETAHGDGFAGGLLLD--PLAERALPALPAPESGLTLLIG 197
Query: 239 PEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
PEG +E G V LGP LR ETA +A +A +
Sbjct: 198 PEGGLDPREREAARRHGFQGVRLGPRILRTETAPLAAIAVI 238
>gi|338213563|ref|YP_004657618.1| ribosomal RNA small subunit methyltransferase E [Runella
slithyformis DSM 19594]
gi|336307384|gb|AEI50486.1| Ribosomal RNA small subunit methyltransferase E [Runella
slithyformis DSM 19594]
Length = 234
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 95/219 (43%), Gaps = 19/219 (8%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
DE +H KVLRL + V + +GKG + +Q+ D+ ++ + P+ + +
Sbjct: 18 DEAFHAAKVLRLREGEAVRVTDGKGSWFDAVVQKSTPKRCDLTVIQR-TVQTPRSYRIEI 76
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSA 178
A T R +W VEK TE+G +V+ T H + R + IA SA
Sbjct: 77 ALA-PTKNMDRIEWFVEKATEIGIDTVSFFYTR-HSERRNMKLERLQK-------IAVSA 127
Query: 179 FVYGGQRLHEMVLNPPMK----IDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGL 234
Q L + P +K +P VS ++ + E L S++
Sbjct: 128 M---KQSLQAFL--PELKEVGDFSNYVPGVSAAQKFIAHLPEDRTPPHLLKSAQPGQEYT 182
Query: 235 IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
+++GPEGDFTE E+ + G LG RLR ETA +
Sbjct: 183 VLIGPEGDFTEAEIRLTQQHGFEMATLGNTRLRTETAAL 221
>gi|426327212|ref|NP_353680.4| conserved hypothetical protein [Agrobacterium fabrum str. C58]
gi|159139721|gb|AAK86465.2| conserved hypothetical protein [Agrobacterium fabrum str. C58]
Length = 239
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 14/222 (6%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
S+G G++F ++ VLR++ + LFNG+ G + + R + +V LE +
Sbjct: 10 LSEGVAQEATGEQFNYLANVLRMTDGAEILLFNGRDGEWKAKLSFPSRKKISLVPLEQTR 69
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
PQ + F LK GR D+LV+K E+GA + P++T+ H+Q KI ++ L
Sbjct: 70 ---PQPDAAELHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQ-HVQG-KIHNSEKLRA 124
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS-KLAFVAIAEATPLVTALSS 226
N +A G L E+ P+K+ +L + ++ + +A +
Sbjct: 125 N-----AIEAAEQCGILSLPEVA--EPVKLKEMLETWPEDRRIIYCDEGDAGQNPLPILQ 177
Query: 227 SRNESSGLIIVGPEGDFTEKEVNKIVE-AGATAVGLGPHRLR 267
+ E ++VGPEG F+E+E + A T + LGP LR
Sbjct: 178 AVKERKIALLVGPEGGFSEEERALLRSLAFVTPIPLGPRILR 219
>gi|357383553|ref|YP_004898277.1| ribosomal RNA small subunit methyltransferase E [Pelagibacterium
halotolerans B2]
gi|351592190|gb|AEQ50527.1| ribosomal RNA small subunit methyltransferase E [Pelagibacterium
halotolerans B2]
Length = 246
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 116/251 (46%), Gaps = 34/251 (13%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PR + + G + ++ D+ H+ VLR + D +FNG+ G I ++ + +
Sbjct: 8 LPRLYVEPPLADGAEIALDKDQTNHLVNVLRRTPGDNCVVFNGRDGAFLAEIVQVAKKLV 67
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
+ +E P + W FG R D+ ++K TE+GA + P++T H+Q+ +
Sbjct: 68 SLRLIERTTEQTPANDLW-----FGFAPIKRLDYEIQKATEMGAGMIQPVITR-HVQNAR 121
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMV---LNPPMKIDGLLPLVSQSK----LAF 211
I + + + Q+ + + P + L+ + S L F
Sbjct: 122 INPDKL-----------KAHAIEAAQQCEVLSVPDIAPETSFEKLVTGWTDSHGDRILVF 170
Query: 212 V--AIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLRV 268
A A A+P+ T L+ + + GL+I GPEG F+E+E +++ + LGP LR
Sbjct: 171 CDEAAASASPVET-LTRLKGKRLGLLI-GPEGGFSEEERERLLGLDFVVPISLGPRILRA 228
Query: 269 ETATIALLATL 279
+TAT+A LA +
Sbjct: 229 DTATVAALALI 239
>gi|229545442|ref|ZP_04434167.1| protein of hypothetical function DUF558 [Enterococcus faecalis
TX1322]
gi|229549686|ref|ZP_04438411.1| protein of hypothetical function DUF558 [Enterococcus faecalis ATCC
29200]
gi|307268138|ref|ZP_07549525.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX4248]
gi|307275914|ref|ZP_07557047.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX2134]
gi|307277697|ref|ZP_07558783.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0860]
gi|307295909|ref|ZP_07575741.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0411]
gi|312900878|ref|ZP_07760172.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0470]
gi|312902754|ref|ZP_07761958.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0635]
gi|312951285|ref|ZP_07770186.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0102]
gi|422686387|ref|ZP_16744585.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX4000]
gi|422690314|ref|ZP_16748371.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0630]
gi|422692691|ref|ZP_16750706.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0031]
gi|422697190|ref|ZP_16755136.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX1346]
gi|422702135|ref|ZP_16759975.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX1342]
gi|422704879|ref|ZP_16762689.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX1302]
gi|422705430|ref|ZP_16763232.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0043]
gi|422711427|ref|ZP_16768356.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0027]
gi|422725203|ref|ZP_16781671.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0312]
gi|422732554|ref|ZP_16788885.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0645]
gi|422870064|ref|ZP_16916562.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX1467]
gi|229305166|gb|EEN71162.1| protein of hypothetical function DUF558 [Enterococcus faecalis ATCC
29200]
gi|229309358|gb|EEN75345.1| protein of hypothetical function DUF558 [Enterococcus faecalis
TX1322]
gi|306496240|gb|EFM65819.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0411]
gi|306505576|gb|EFM74760.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0860]
gi|306507244|gb|EFM76381.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX2134]
gi|306515528|gb|EFM84056.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX4248]
gi|310630721|gb|EFQ14004.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0102]
gi|310633808|gb|EFQ17091.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0635]
gi|311291977|gb|EFQ70533.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0470]
gi|315028901|gb|EFT40833.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX4000]
gi|315034530|gb|EFT46462.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0027]
gi|315152591|gb|EFT96607.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0031]
gi|315157276|gb|EFU01293.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0043]
gi|315159889|gb|EFU03906.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0312]
gi|315161371|gb|EFU05388.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0645]
gi|315163668|gb|EFU07685.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX1302]
gi|315169384|gb|EFU13401.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX1342]
gi|315174316|gb|EFU18333.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX1346]
gi|315576685|gb|EFU88876.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0630]
gi|329568734|gb|EGG50534.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX1467]
Length = 245
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 110/247 (44%), Gaps = 29/247 (11%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVEL-FNGKGGLIEGCIQRIDRTGL--DVVALE 104
+ + + +V + + H+ +V+R++ NDR L F K ++ ++ ID T + ++ E
Sbjct: 5 YQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVE-IDSTSVYFKEISKE 63
Query: 105 DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQ------SVTPLLTELHLQSRK 158
++ LP V A G KG + +W+V+K TELG + T ++ H + R
Sbjct: 64 EMDKELP----IEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDH-KKRA 118
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA- 217
+ IA A R ++ K ++ VA E+
Sbjct: 119 AKEKRLQK-------IATEA-AEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESA 170
Query: 218 -----TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
+ L LS+ + + ++ GPEG F +E+ + ++AGA GLGP LR ETA
Sbjct: 171 KQGEKSQLAQVLSTCQPGARLCVLFGPEGGFAPQEIEQFLQAGAKLCGLGPRILRAETAP 230
Query: 273 IALLATL 279
+ LL+ +
Sbjct: 231 LYLLSAV 237
>gi|227555475|ref|ZP_03985522.1| protein of hypothetical function DUF558 [Enterococcus faecalis
HH22]
gi|307272833|ref|ZP_07554080.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0855]
gi|422713285|ref|ZP_16770038.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0309A]
gi|422717179|ref|ZP_16773869.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0309B]
gi|424678337|ref|ZP_18115177.1| RNA methyltransferase, RsmE family [Enterococcus faecalis ERV103]
gi|424682194|ref|ZP_18118971.1| RNA methyltransferase, RsmE family [Enterococcus faecalis ERV116]
gi|424685424|ref|ZP_18122122.1| RNA methyltransferase, RsmE family [Enterococcus faecalis ERV129]
gi|424688182|ref|ZP_18124798.1| RNA methyltransferase, RsmE family [Enterococcus faecalis ERV25]
gi|424691053|ref|ZP_18127580.1| RNA methyltransferase, RsmE family [Enterococcus faecalis ERV31]
gi|424694634|ref|ZP_18131030.1| RNA methyltransferase, RsmE family [Enterococcus faecalis ERV37]
gi|424695821|ref|ZP_18132194.1| RNA methyltransferase, RsmE family [Enterococcus faecalis ERV41]
gi|424702066|ref|ZP_18138229.1| RNA methyltransferase, RsmE family [Enterococcus faecalis ERV62]
gi|424704287|ref|ZP_18140389.1| RNA methyltransferase, RsmE family [Enterococcus faecalis ERV63]
gi|424712753|ref|ZP_18144922.1| RNA methyltransferase, RsmE family [Enterococcus faecalis ERV65]
gi|424716878|ref|ZP_18146177.1| RNA methyltransferase, RsmE family [Enterococcus faecalis ERV68]
gi|424722258|ref|ZP_18151322.1| RNA methyltransferase, RsmE family [Enterococcus faecalis ERV72]
gi|424722968|ref|ZP_18151988.1| RNA methyltransferase, RsmE family [Enterococcus faecalis ERV73]
gi|424728349|ref|ZP_18156956.1| RNA methyltransferase, RsmE family [Enterococcus faecalis ERV81]
gi|424740518|ref|ZP_18168900.1| RNA methyltransferase, RsmE family [Enterococcus faecalis ERV85]
gi|424749875|ref|ZP_18177952.1| RNA methyltransferase, RsmE family [Enterococcus faecalis ERV93]
gi|227175397|gb|EEI56369.1| protein of hypothetical function DUF558 [Enterococcus faecalis
HH22]
gi|306510447|gb|EFM79470.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0855]
gi|315574554|gb|EFU86745.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0309B]
gi|315581804|gb|EFU93995.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0309A]
gi|402349565|gb|EJU84509.1| RNA methyltransferase, RsmE family [Enterococcus faecalis ERV116]
gi|402351665|gb|EJU86545.1| RNA methyltransferase, RsmE family [Enterococcus faecalis ERV103]
gi|402358774|gb|EJU93434.1| RNA methyltransferase, RsmE family [Enterococcus faecalis ERV129]
gi|402361574|gb|EJU96124.1| RNA methyltransferase, RsmE family [Enterococcus faecalis ERV25]
gi|402362897|gb|EJU97409.1| RNA methyltransferase, RsmE family [Enterococcus faecalis ERV31]
gi|402370072|gb|EJV04312.1| RNA methyltransferase, RsmE family [Enterococcus faecalis ERV62]
gi|402370269|gb|EJV04489.1| RNA methyltransferase, RsmE family [Enterococcus faecalis ERV37]
gi|402379161|gb|EJV12978.1| RNA methyltransferase, RsmE family [Enterococcus faecalis ERV41]
gi|402379630|gb|EJV13422.1| RNA methyltransferase, RsmE family [Enterococcus faecalis ERV65]
gi|402382376|gb|EJV16043.1| RNA methyltransferase, RsmE family [Enterococcus faecalis ERV63]
gi|402386638|gb|EJV20140.1| RNA methyltransferase, RsmE family [Enterococcus faecalis ERV68]
gi|402389443|gb|EJV22839.1| RNA methyltransferase, RsmE family [Enterococcus faecalis ERV72]
gi|402394028|gb|EJV27226.1| RNA methyltransferase, RsmE family [Enterococcus faecalis ERV81]
gi|402400375|gb|EJV33206.1| RNA methyltransferase, RsmE family [Enterococcus faecalis ERV73]
gi|402401939|gb|EJV34678.1| RNA methyltransferase, RsmE family [Enterococcus faecalis ERV85]
gi|402407444|gb|EJV39974.1| RNA methyltransferase, RsmE family [Enterococcus faecalis ERV93]
Length = 245
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 110/247 (44%), Gaps = 29/247 (11%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVEL-FNGKGGLIEGCIQRIDRTGL--DVVALE 104
+ + + +V + + H+ +V+R++ NDR L F K ++ ++ ID T + ++ E
Sbjct: 5 YQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVE-IDSTSVYFKEISKE 63
Query: 105 DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQ------SVTPLLTELHLQSRK 158
++ LP V A G KG + +W+V+K TELG + T ++ H + R
Sbjct: 64 EMDKELP----IEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDH-KKRA 118
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA- 217
+ IA A R ++ K ++ VA E+
Sbjct: 119 AKEKRLQK-------IATEA-AEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESA 170
Query: 218 -----TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
+ L LS+ + + ++ GPEG F +E+ + ++AGA GLGP LR ETA
Sbjct: 171 KQGEKSQLAQVLSTCQPGARLCVLFGPEGGFAPQEIEQFLQAGAKLCGLGPRILRAETAP 230
Query: 273 IALLATL 279
+ LL+ +
Sbjct: 231 LYLLSVV 237
>gi|229597239|ref|YP_001763902.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia cenocepacia
MC0-3]
Length = 255
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 102/236 (43%), Gaps = 15/236 (6%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF + + + D H+ +VLRL D + LF+G GG + +D+
Sbjct: 10 VPRFFVDAALRADAPLALPADVARHV-QVLRLQPGDVLALFDGTGGQYRARLVEVDKRS- 67
Query: 99 DVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
AL + P + + V A G G + DW++EK ELG +V PL T +
Sbjct: 68 ---ALVQVDTFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGV-V 123
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEM--VLNPPMKIDGLLPLVSQSKLAFVAI 214
+ G+ + G + S G R+ ++ V +D L + +L +
Sbjct: 124 KLSGERADKRVAHWRGVVRASCEQCGRNRVPDVAAVAGFNAWLDALPAAPADGELRLLLS 183
Query: 215 AEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
A+ +L + ++ +++GPEG + E + G TA+ LGP LR ET
Sbjct: 184 PRASSPFASLPDAPPAATVTLLIGPEGGLSPDEEHAARARGFTALSLGPRVLRTET 239
>gi|373954720|ref|ZP_09614680.1| Ribosomal RNA small subunit methyltransferase E [Mucilaginibacter
paludis DSM 18603]
gi|373891320|gb|EHQ27217.1| Ribosomal RNA small subunit methyltransferase E [Mucilaginibacter
paludis DSM 18603]
Length = 234
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 97/219 (44%), Gaps = 19/219 (8%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCI--QRIDRTGLDVVALEDLKLVLPQHTQW 116
+E H +VLRL D V+L +G GGL E I + L +++L++ + +
Sbjct: 20 EESKHCIRVLRLQMGDHVQLIDGHGGLYEAEIVDAHPKKVALKLLSLQN---EFGRRNHY 76
Query: 117 NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIAN 176
A T R +W +EK TE+G ++ ++ + RK L+ I
Sbjct: 77 LHIAVAPTKNLERLEWFLEKATEIGIDEISLMICQ--RSERKEAKAERLNK------IIT 128
Query: 177 SAFVYGGQRLHEMVLNPPMKIDGLL--PLVSQSKLAFVAIAEATPLVTALSSSRNESSGL 234
SA + H + LN L+ P Q +A + L + L + + L
Sbjct: 129 SAIKQSLKAYHPL-LNEVTPFQKLINQPFDGQKFIAHCEPGDKAELSSLL---KLQGCYL 184
Query: 235 IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
I++GPEGDF+ KE+ ++ G + LG RLR ETA +
Sbjct: 185 ILIGPEGDFSPKEIEDALQNGFEPITLGNSRLRTETAAL 223
>gi|265985135|ref|ZP_06097870.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|306839033|ref|ZP_07471853.1| conserved hypothetical protein [Brucella sp. NF 2653]
gi|264663727|gb|EEZ33988.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|306405856|gb|EFM62115.1| conserved hypothetical protein [Brucella sp. NF 2653]
Length = 242
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 99/217 (45%), Gaps = 16/217 (7%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ VLR+ D V +FNG+ G +Q R L LE L+ PQ + F
Sbjct: 25 YLAHVLRMKEGDEVLVFNGRDGEWRASLQPEGRKRL---LLEPLEQTRPQPKPSELIYCF 81
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
LK GR D++V+K E+GA + P++T+ H Q ++G + + A V
Sbjct: 82 APLKQGRLDYMVQKAVEMGAGVLQPVITQ-HTQVPRLGTDRIRANAIE---AAEQCGVLS 137
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQS-KLAFVAIA-EATPLVTALSSSRNESSGLIIVGPE 240
E ++ D L S +L F E+ ++ L+ SGL+I GPE
Sbjct: 138 LPDCREA-----LRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLEPGPSGLLI-GPE 191
Query: 241 GDFTEKEVNKIVEAG-ATAVGLGPHRLRVETATIALL 276
G F+E+E + TA+ LGP LR +TA +A +
Sbjct: 192 GGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAM 228
>gi|325295443|ref|YP_004281957.1| ribosomal RNA small subunit methyltransferase E [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065891|gb|ADY73898.1| Ribosomal RNA small subunit methyltransferase E [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 241
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 106/225 (47%), Gaps = 12/225 (5%)
Query: 52 GIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLP 111
G+ + G E H KVLRL D + +F+G+G I+ T + + LE++ +
Sbjct: 12 GVAYLRGQEARHALKVLRLRKGDEIIIFDGEGREYLAEIEAASPTSVRLKVLEEININRD 71
Query: 112 QHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTEL--HLQSRKIGDNGFLSCNF 169
H + ++ T K + + ++K TELG + P++ + + Q+ K DN
Sbjct: 72 SHLKTTLYMGL-TNKLQKFELAIQKATELGVTEIIPVVCKRSSNAQNIKNWDN---KLRR 127
Query: 170 YYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRN 229
+ + N+A G L +++ P+K L + + S L FV + + S +
Sbjct: 128 WEEIVVNAAKQCGRNILP--IVHSPVK---LPEIENNSDLLFVLWEKGGKSLKDYESF-S 181
Query: 230 ESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274
SS +IVGPEG F ++E+ + E G + LG LR ETA IA
Sbjct: 182 ASSVSLIVGPEGGFDKEEIEILKEKGFKPIYLGKRILRAETAAIA 226
>gi|315640054|ref|ZP_07895179.1| RsmE family RNA methyltransferase [Enterococcus italicus DSM 15952]
gi|315484182|gb|EFU74653.1| RsmE family RNA methyltransferase [Enterococcus italicus DSM 15952]
Length = 257
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 101/238 (42%), Gaps = 33/238 (13%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRI--DRTGLDVVALEDLKLVLPQH 113
V G+ F HM +V+R+ + V L +E I+ + D L VA+E L+ LP
Sbjct: 19 VTGEPFHHMIRVMRMEAGNHVYLVFANDMSLEAEIREVKADAVMLKPVAIEQLQRELP-- 76
Query: 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQS--VTPLLTEL---HLQSRKIGDNGFLSCN 168
V A G KG + +W+V+K TELGA P T + + R+
Sbjct: 77 --IKVTIASGFPKGDKLEWIVQKGTELGAAQFLAYPAKTSIVKWDPKKRQKKQERLQK-- 132
Query: 169 FYYGFIANSAFVYGGQRLHEMVLNPPMKI----DGLLPLVSQSKLAFVAIAEATP----- 219
IA A ++ H V P +++ LL + + VA E+
Sbjct: 133 -----IAQEA----AEQSHRQVC-PTVELFATQSDLLAAMETADCVLVAYEESAKKGEHA 182
Query: 220 -LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALL 276
LV +++ GPEG F +E+ + V AGA GLGP LR ETA + +L
Sbjct: 183 QLVQTFRKVAPGQHLMVLFGPEGGFLPEEIERFVAAGAICCGLGPRILRTETAPLYVL 240
>gi|229220687|ref|YP_620039.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia cenocepacia
AU 1054]
gi|229220796|ref|YP_834281.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia cenocepacia
HI2424]
Length = 255
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 102/236 (43%), Gaps = 15/236 (6%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF + + + D H+ +VLRL D + LF+G GG + +D+
Sbjct: 10 VPRFFVDAALRADATLALPADVARHV-QVLRLQPGDVLALFDGTGGQYRARLVEVDKRS- 67
Query: 99 DVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
AL + P + + V A G G + DW++EK ELG +V PL T +
Sbjct: 68 ---ALVQVDTFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGV-V 123
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEM--VLNPPMKIDGLLPLVSQSKLAFVAI 214
+ G+ + G + S G R+ ++ V +D L + +L +
Sbjct: 124 KLSGERADKRVAHWRGVVRASCEQCGRNRVPDVAPVAGFNAWLDALPAAPADGELRLLLS 183
Query: 215 AEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
A+ +L + ++ +++GPEG + E + G TA+ LGP LR ET
Sbjct: 184 PRASSPFASLPDAPPAAAVTLLIGPEGGLSPDEEHAARARGFTALSLGPRVLRTET 239
>gi|320450557|ref|YP_004202653.1| RsmE family RNA methyltransferase [Thermus scotoductus SA-01]
gi|320150726|gb|ADW22104.1| RNA methyltransferase, RsmE family [Thermus scotoductus SA-01]
Length = 228
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 103/235 (43%), Gaps = 35/235 (14%)
Query: 60 EFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL-DVVAL------EDLKLVLPQ 112
E H+ +VLR DR +F+ +DR L +VV L L+ P+
Sbjct: 19 ESRHLLEVLRAKVGDRFTVFD------------VDREALAEVVELGPPVRYRILEERRPE 66
Query: 113 HTQWNVFAAF-GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYY 171
A + LKG + +V TELGA + PL+T H +++G+
Sbjct: 67 REVGVEVALYPALLKGDKLAEVVRAATELGATRIQPLVTR-HSVPKEMGEG---KLKRLQ 122
Query: 172 GFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNES 231
+A G R+ E++ PP+ ++ L P V Q +A V V L S
Sbjct: 123 AIAVEAAKQSGRLRVPEVL--PPIPLNAL-PKVEQGMVAHVGARSLVREVLDLGKSLA-- 177
Query: 232 SGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSDSQ 286
+ VGPEG F E+EV + E G T V LG LR ETA IALLA LC+ +
Sbjct: 178 ---LAVGPEGGFAEEEVELLQEKGFTPVFLGRRILRAETAAIALLA---LCTAGE 226
>gi|348030140|ref|YP_004872826.1| ribosomal RNA small subunit methyltransferase E [Glaciecola
nitratireducens FR1064]
gi|347947483|gb|AEP30833.1| ribosomal RNA small subunit methyltransferase E [Glaciecola
nitratireducens FR1064]
Length = 242
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 100/219 (45%), Gaps = 12/219 (5%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ VLRL +D + LFNG G E C + + + VV + +L + + ++ A
Sbjct: 27 YINNVLRLKQSDPLVLFNGDGN--EYCGEILSISKKQVVVIVGSQLSMRSESPLHIHLAQ 84
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G KG R D+ ++K ELG +TP++TE + K+ + + + I SA
Sbjct: 85 GVSKGDRMDFALQKSVELGVTEITPVITERC--AVKLSSERWEKKHEQWQKIVISACEQS 142
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSS--SRNESSGLIIVGPE 240
G+ + + L Q K+ TP + S +R +++GPE
Sbjct: 143 GRNILPTLHQAITLQKWLGQTTDQQKVML------TPGSSKYMSNLTRPPKGFRLLIGPE 196
Query: 241 GDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
G +E+E+ + G +V LGP LR ETA +A ++ +
Sbjct: 197 GGLSEQEIYTCEQTGFESVNLGPRILRTETAALASISIM 235
>gi|344941337|ref|ZP_08780625.1| Ribosomal RNA small subunit methyltransferase E [Methylobacter
tundripaludum SV96]
gi|344262529|gb|EGW22800.1| Ribosomal RNA small subunit methyltransferase E [Methylobacter
tundripaludum SV96]
Length = 253
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 108/244 (44%), Gaps = 22/244 (9%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTG--LDVVALED 105
+ G ++ ++ D ++ VLRL + + LFNG GG + + R +DV D
Sbjct: 12 LATGKLIELDDDNGHYVRTVLRLKKDAHIILFNGHGGEYLCTVAEVSRKAVLIDVGQWSD 71
Query: 106 LKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFL 165
+ P + G +G R D V+K ELG +TPLLTE + K G+
Sbjct: 72 RSVESP----LQITLGLGISRGDRMDLTVQKAVELGVNHITPLLTERCVVQFK-GEKKPQ 126
Query: 166 SCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS---KLAFVAIAEATPLVT 222
+ + ++A G L P ++++ L + K+ AE T
Sbjct: 127 RLLHWQKIVQHAAEQSG-----RTSLPPLLEVEQLQNWLGNQQGLKVFLDPYAE-----T 176
Query: 223 ALSSSRNESSGL-IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL-M 280
LS + E+ + ++ GPEG F+ +E + +G V LG LR ETA++A LA + M
Sbjct: 177 TLSELKPETMKVTLLTGPEGGFSNQERDAAKASGFIPVRLGSRILRTETASLAALAAVQM 236
Query: 281 LCSD 284
L D
Sbjct: 237 LWGD 240
>gi|385341231|ref|YP_005895102.1| hypothetical protein NMBM01240149_0264 [Neisseria meningitidis
M01-240149]
gi|385856528|ref|YP_005903040.1| hypothetical protein NMBNZ0533_0401 [Neisseria meningitidis
NZ-05/33]
gi|325201437|gb|ADY96891.1| conserved hypothetical protein TIGR00046 [Neisseria meningitidis
M01-240149]
gi|325207417|gb|ADZ02869.1| conserved hypothetical protein TIGR00046 [Neisseria meningitidis
NZ-05/33]
Length = 241
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 115/249 (46%), Gaps = 29/249 (11%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRF+ S G V + + H+ VLR+ N+ + LF+GKG + +++
Sbjct: 1 MPRFYLPENLSVGQTVALPDNIVRHLN-VLRVRPNENITLFDGKGKAHAAQLTVLEKRRA 59
Query: 99 DVVAL-EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
+ L ED + N+ G R D+ ++K ELG ++ P+++E + R
Sbjct: 60 EAEILHED---TTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCI-VR 115
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA 217
G+ + + ++ G + PP +LP++ + +E+
Sbjct: 116 LDGERAAKRLARWQEIVISACEQSGRNTV------PP-----VLPIIGYREALDKMPSES 164
Query: 218 TPLVTALSSSRN-----ESSGLII--VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
T L+ +++ +R + SG I+ VGPEG +TE+E + +AG AV LG LR ET
Sbjct: 165 TKLIMSINRARKLGDIRQPSGAIVFMVGPEGGWTEQEEQQAFDAGFQAVTLGKRILRTET 224
Query: 271 ATIALLATL 279
A +A LA +
Sbjct: 225 APLAALAAM 233
>gi|297180287|gb|ADI16506.1| uncharacterized protein conserved in bacteria [uncultured bacterium
HF4000_05M23]
Length = 274
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 113/252 (44%), Gaps = 36/252 (14%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQH 113
+ ++G + VLR+ DR+ LF+G G E I ++DRT + V + ++ V
Sbjct: 26 ITLDGQLARQLKTVLRVGIGDRIGLFDGSGLEWEVQIDQVDRTEVAVRLISTVESVPEPF 85
Query: 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGF 173
+ + G + R + ++KCTELGA P+L+E +Q G + +
Sbjct: 86 ARVTML--LGLARPERIELAIQKCTELGAVRFIPVLSE-RVQGGVTGAPSGSRLDRWRRI 142
Query: 174 IANSAFVYGGQRLHEMVLNPPMKIDGLLPLVS--QSKLAFVAI--------AEATPLVTA 223
+A G + PP +D LP++ S+LA + +++PL A
Sbjct: 143 AIEAAEQCG------RAVVPP--VDEPLPVMDAVNSQLAARQLFCMWEERTGDSSPLGEA 194
Query: 224 LSS-----------SRNESSG----LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRV 268
L S R +G +++GP G + E + I EAGA+ V LGP LR
Sbjct: 195 LKSIETQALEKNDGQRETGTGGCEMAVLIGPPGGVSHAEASAIQEAGASLVTLGPRVLRS 254
Query: 269 ETATIALLATLM 280
ETA I +++ ++
Sbjct: 255 ETAAIVVMSAIL 266
>gi|161869288|ref|YP_001598455.1| 16S ribosomal RNA methyltransferase RsmE [Neisseria meningitidis
053442]
gi|161594841|gb|ABX72501.1| conserved hypothetical protein [Neisseria meningitidis 053442]
Length = 241
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 113/247 (45%), Gaps = 24/247 (9%)
Query: 41 RGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV 100
R +P S G V + + H+ VLR+ N+ + LF+GKG + +++ +
Sbjct: 3 RFHLPENLSVGQTVALPDNIVRHLN-VLRVRPNENITLFDGKGKAHAARLTVLEKRRAEA 61
Query: 101 VAL-EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
L ED + N+ G R D+ ++K ELG ++ P+++E + R
Sbjct: 62 EILHED---TTDNESPLNITLIQSISSGERMDFTLQKSVELGVTAIQPVISERCI-VRLD 117
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
G+ + + ++ G + PP +LP++ + +E+T
Sbjct: 118 GERAAKRLARWQEIVISACEQSGRNTV------PP-----VLPIIGYREALDKMPSESTK 166
Query: 220 LVTALSSSRN-----ESSGLII--VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
L+ +++ +R + SG I+ VGPEG +TE+E + EAG AV LG LR ETA
Sbjct: 167 LIMSINRARKLGDIRQPSGAIVFMVGPEGGWTEQEEQQAFEAGFQAVTLGKRILRTETAP 226
Query: 273 IALLATL 279
+A LA +
Sbjct: 227 LAALAAM 233
>gi|375148783|ref|YP_005011224.1| Ribosomal RNA small subunit methyltransferase E [Niastella
koreensis GR20-10]
gi|361062829|gb|AEW01821.1| Ribosomal RNA small subunit methyltransferase E [Niastella
koreensis GR20-10]
Length = 285
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 22/235 (9%)
Query: 44 IPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVAL 103
IP ++ + ++ D H+ VLR+ +++ L +GKG L+ I + V +
Sbjct: 52 IPDIVAKQQEIELDEDTSKHIVNVLRMKKGEQLHLTDGKGFLLLTSITDDHKKRCRVSVV 111
Query: 104 EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNG 163
+ +PQ + A R +W +EK TELG + PLL + ++ K
Sbjct: 112 NEQ--FIPQTGRKTSIAISLLKNASRFEWFLEKATELGITEIIPLLCD---RTEK----- 161
Query: 164 FLSCNFYYGFIAN--SAFVYGGQRLHEMVLNPPMKIDGLLPL-----VSQSKLAFVAIAE 216
+F + + N + + Q+ VL+ P+ LL +Q +A +
Sbjct: 162 ---QHFRFDRMHNILVSAMLQSQQAWLPVLHQPVGFGQLLKQEDIISTTQKFIAHCMPGD 218
Query: 217 ATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA 271
PL ++SS S L+++GPEGDF+ +EV E V LG RLR ETA
Sbjct: 219 KQPLAALVNSSL--PSQLVLIGPEGDFSPEEVAFATEHYFMPVTLGNTRLRTETA 271
>gi|217979033|ref|YP_002363180.1| hypothetical protein Msil_2902 [Methylocella silvestris BL2]
gi|217504409|gb|ACK51818.1| protein of unknown function DUF558 [Methylocella silvestris BL2]
Length = 253
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 102/224 (45%), Gaps = 20/224 (8%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQH 113
V +E + ++ LRL + FNG+ G I+ R + A + L+ PQ
Sbjct: 23 VSLEAPQVNYLRNALRLKDGAEILAFNGRDGEWRARIETEGRRSTVLAADQQLR---PQP 79
Query: 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGF 173
+++ F LK R D++V+K E+GA + P+LT Q+ +I + +
Sbjct: 80 PPFDLHYLFAPLKHARLDYMVQKAVEMGAGQLRPVLTR-RTQAERI------NLDRMRAN 132
Query: 174 IANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP---LVTALSSSRNE 230
+A G + E++ P+++D L S +L V E P V AL ++R
Sbjct: 133 AIEAAEQCGVLSVAEIIA--PIRLDAALAQWSPDRL-LVFCDEDAPEQDPVAALRAARES 189
Query: 231 SSG---LIIVGPEGDFTEKEVNKIVEAGATA-VGLGPHRLRVET 270
+ G +++GPEG F E E ++ A T + LGP LR +T
Sbjct: 190 NPGGGLAVLIGPEGGFDEDERKALLAAPRTVRLSLGPRVLRADT 233
>gi|335035482|ref|ZP_08528823.1| hypothetical protein AGRO_2815 [Agrobacterium sp. ATCC 31749]
gi|333793249|gb|EGL64605.1| hypothetical protein AGRO_2815 [Agrobacterium sp. ATCC 31749]
Length = 245
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 14/222 (6%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
S+G G++F ++ VLR++ + LFNG+ G + + R + +V LE +
Sbjct: 16 LSEGVAQEATGEQFNYLANVLRMTDGAEILLFNGRDGEWKAKLSFPSRKKISLVPLEQTR 75
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
PQ + F LK GR D+LV+K E+GA + P++T+ H+Q KI ++ L
Sbjct: 76 ---PQPKAAELHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQ-HVQG-KIHNSEKLRA 130
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS-KLAFVAIAEATPLVTALSS 226
N +A G L E+ P+K+ +L + ++ + +A +
Sbjct: 131 N-----AIEAAEQCGILFLPEVA--EPVKLKEMLETWPEDCRIIYCDEGDAGQNPLPILQ 183
Query: 227 SRNESSGLIIVGPEGDFTEKEVNKIVE-AGATAVGLGPHRLR 267
+ E ++VGPEG F+E+E + A T + LGP LR
Sbjct: 184 AVKERKIALLVGPEGGFSEEERALLRSLAFVTPIPLGPRILR 225
>gi|167752853|ref|ZP_02424980.1| hypothetical protein ALIPUT_01114 [Alistipes putredinis DSM 17216]
gi|167659922|gb|EDS04052.1| RNA methyltransferase, RsmE family [Alistipes putredinis DSM 17216]
Length = 253
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 103/235 (43%), Gaps = 21/235 (8%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
+E H +VLR++ + + + +G+G L C D V + D +
Sbjct: 19 EESKHCIRVLRMACGEELHITDGRGNLYR-CEIVDDNPKRCRVRVRDTNSEFGKLPYRLT 77
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIG---DNGFLSCNFYYGFIA 175
A T R +W +EK TE+G + PL TE H + R + +N ++ +
Sbjct: 78 MAVAPTKNNDRFEWFLEKATEIGVAEIIPLATE-HSERRTLKPERENKVIT-----AAVK 131
Query: 176 NSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA--TPLVTALSSSRNESSG 233
S Y RLHE+ P++ P Q F+A +A + L A G
Sbjct: 132 QSLKAY-HPRLHEIT---PLRQVIKQPFDGQK---FIAHCDAPRSALGKAFLPHILHKGG 184
Query: 234 --LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSDSQ 286
L+++GPEGDF+ +E++ V G + LG RLR ETA + A + ++S+
Sbjct: 185 DVLVLIGPEGDFSPEEIDLAVRGGFREITLGSQRLRTETAAVMATALVAAANESE 239
>gi|440714490|ref|ZP_20895069.1| Ribosomal RNA small subunit methyltransferase E [Rhodopirellula
baltica SWK14]
gi|436440686|gb|ELP33990.1| Ribosomal RNA small subunit methyltransferase E [Rhodopirellula
baltica SWK14]
Length = 280
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 121/284 (42%), Gaps = 57/284 (20%)
Query: 44 IPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEG---------CIQRID 94
+P +Q +V++ +E H ++V+R+ T DR+ELF+G G + C+ R D
Sbjct: 7 VPDLQTQAPVVQLPDEEASHASRVMRVQTGDRIELFDGCGHQADAEVVSVSKRECVVRCD 66
Query: 95 RTGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE--- 151
+ED+ + V A G K RA ++E+ TELG V P++ E
Sbjct: 67 -------PIEDVD----REPSIAVDLAIGLPKPDRAKEMIERLTELGVARVFPIVFERTQ 115
Query: 152 -------------LHLQS-RKIGDNGFLSCNFYYGFI-------ANSAF---------VY 181
+ ++S ++ G N ++ F+ A+SA +
Sbjct: 116 RPPKENFLDKLRRIVIESCKQSGRNVLMTIESPIDFVSFTETLAASSATNDEEDLQPRQW 175
Query: 182 GGQR-LHEMVLNPPMK-IDGLLPLVSQSKLAFVAIAEAT--PLVTALSSSRNESSGLIIV 237
QR L M +PP+ D V Q+ A + + T S L ++
Sbjct: 176 SWQRVLVAMPDSPPLSATDVERTGVGQTGAAQTGEGQTDVGQINTGQSGLNGRPRTLALI 235
Query: 238 GPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
GPEG +E E + V+ GA ++GLG LR+ETA + A L++
Sbjct: 236 GPEGGLSEAEHQRCVDVGAESIGLGRRILRIETAAAIVAARLVV 279
>gi|422735766|ref|ZP_16792032.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX1341]
gi|315167500|gb|EFU11517.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX1341]
Length = 245
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 109/247 (44%), Gaps = 29/247 (11%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVEL-FNGKGGLIEGCIQRIDRTGL--DVVALE 104
+ + + +V + + H+ +V+R++ NDR L F K ++ ++ ID T + ++ E
Sbjct: 5 YQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVE-IDSTSVYFKEISKE 63
Query: 105 DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQ------SVTPLLTELHLQSRK 158
++ LP V A G KG + +W+V+K TELG + T ++ H + R
Sbjct: 64 EMDKELP----IEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDH-KKRA 118
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT 218
+ IA A R ++ K ++ VA E+
Sbjct: 119 AKEKRLQK-------IATEA-AEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESA 170
Query: 219 P------LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
L LS+ + + ++ GPEG F +E+ + ++AGA GLGP LR ETA
Sbjct: 171 KQGEKRQLAQVLSTCQPGARLCVLFGPEGGFAPQEIEQFLQAGAKLCGLGPRILRAETAP 230
Query: 273 IALLATL 279
+ LL+ +
Sbjct: 231 LYLLSAV 237
>gi|114328853|ref|YP_746009.1| 16S ribosomal RNA methyltransferase RsmE [Granulibacter
bethesdensis CGDNIH1]
gi|114317027|gb|ABI63087.1| surface protein [Granulibacter bethesdensis CGDNIH1]
Length = 250
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 100/230 (43%), Gaps = 20/230 (8%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ V+R D + LFN G I+RIDR G + E ++ +P+ W VFA
Sbjct: 38 YLGTVMRRGVGDALSLFNATDGEWRAVIERIDRKGATLSLTEQIRSPVPEEGPWLVFA-- 95
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
LK + +V+K TELG + P++T R ++ +A
Sbjct: 96 -LLKRTNTELVVQKATELGVSRLIPVMTTRTNAER-------INAARLEAIAVEAA--EQ 145
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNES-SGLIIVGPEG 241
+RL VL P + LL + + + AI + ++ +R + ++ GPEG
Sbjct: 146 CERLSIPVLQAPQPLPALLRDWPEDRRLYAAIERSD-----VAHARGVAGPSALLTGPEG 200
Query: 242 DFTEKEVNKI-VEAGATAVGLGPHRLRVETATIALLATLMLCSDSQQMPI 290
F E+E+ + A V LG LR ETA IA LA L+ MP+
Sbjct: 201 GFAEQELVMLRSHAHVIPVSLGRTVLRAETAAIAGLA-LLTAPPVSDMPL 249
>gi|282877983|ref|ZP_06286792.1| RNA methyltransferase, RsmE family [Prevotella buccalis ATCC 35310]
gi|281299984|gb|EFA92344.1| RNA methyltransferase, RsmE family [Prevotella buccalis ATCC 35310]
Length = 241
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 98/222 (44%), Gaps = 25/222 (11%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQW-- 116
+E H VLRL D + L +G+G + + + D+ LPQ W
Sbjct: 21 EEARHAVSVLRLKAGDEIFLMDGEGSFYQANVT----LAATKHCMYDIVKALPQQKTWKG 76
Query: 117 NVFAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
+V A K R +W++EK TE+G +T L + RK L + +
Sbjct: 77 HVHLAIAPTKMMDRMEWMIEKMTEVGFDEITFL--DCRFSERKK-----LRIDRLEKIVI 129
Query: 176 NSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA------TPLVTALSSSRN 229
A + ++ + V++P M V+Q + + IA ++ + + +
Sbjct: 130 --AAMKQSRKAWKPVVHPIMSFQDF---VNQQREGGLYIAHCYTEIARKDFLSEIQQAND 184
Query: 230 ESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA 271
+ ++VGPEGDF+ EV + +E G ++V LG +RLR ETA
Sbjct: 185 QQDITMLVGPEGDFSMDEVKQALEKGFSSVSLGQNRLRTETA 226
>gi|146342924|ref|YP_001207972.1| 16S ribosomal RNA methyltransferase RsmE [Bradyrhizobium sp. ORS
278]
gi|146195730|emb|CAL79757.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
Length = 249
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 111/237 (46%), Gaps = 21/237 (8%)
Query: 45 PRFFS-----QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PR F +GG V ++ ++ ++ VLRL D+V +FNG+ G + I R D
Sbjct: 9 PRLFVDAPLIEGGAVALDRNQSNYLGNVLRLGAGDQVLVFNGREGEWQATI--AGRKRAD 66
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
++ ++ + + PQ ++ F LK R D++V+K E+GA + P+LT SR
Sbjct: 67 LLTIQ--QRLRPQDQLPDITYVFAPLKHARLDYIVQKAVEMGAAVLQPVLTRHTQVSRLN 124
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVA--IAEA 217
G+ + N + +A G L E+ P+ ++ L S+L AE
Sbjct: 125 GER--MRAN-----VIEAAEQCGILSLAEV--RDPVPLERFLRERMASRLLVFCDEAAEI 175
Query: 218 TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIV-EAGATAVGLGPHRLRVETATI 273
V AL + + +++GPEG F +E ++ + T + LGP LR +TA +
Sbjct: 176 ADPVQALRGAAANAGIDLLIGPEGGFAAEERELLLRQRQVTRLALGPRILRADTAGV 232
>gi|422730243|ref|ZP_16786636.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0012]
gi|315149224|gb|EFT93240.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0012]
Length = 245
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 110/247 (44%), Gaps = 29/247 (11%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVEL-FNGKGGLIEGCIQRIDRTGL--DVVALE 104
+ + + +V + + H+ +V+R++ NDR L F K ++ ++ ID T + ++ E
Sbjct: 5 YQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVE-IDPTSVYFKEISKE 63
Query: 105 DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQ------SVTPLLTELHLQSRK 158
++ LP V A G KG + +W+V+K TELG + T ++ H + R
Sbjct: 64 EMDKELP----IEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDH-KKRA 118
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA- 217
+ IA A R ++ K ++ VA E+
Sbjct: 119 AKEKRLQK-------IATEA-AEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESA 170
Query: 218 -----TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
+ L LS+ + + ++ GPEG F +E+ + ++AGA GLGP LR ETA
Sbjct: 171 KQGEKSQLAQVLSTCQPGARLCVLFGPEGGFAPQEIEQFLQAGAKLCGLGPRILRAETAP 230
Query: 273 IALLATL 279
+ LL+ +
Sbjct: 231 LYLLSAV 237
>gi|420137000|ref|ZP_14645004.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
CIG1]
gi|403250234|gb|EJY63686.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
CIG1]
Length = 240
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 97/216 (44%), Gaps = 10/216 (4%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +VLR +T D V+LF+G G G + + + + V E + + +
Sbjct: 26 YIGRVLRHATGDAVQLFDGSGREYLGELVEVGKKNVRVELRE--QFAGQPDSPLRIHLGQ 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G R DW ++K E G +TP+++E ++ D ++ +A SA
Sbjct: 84 GLSRGERMDWAIQKAIERGVAEITPIVSER--CEVRLKDERADKRLQHWRQVAISACEQC 141
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
G R +++PP+ ++ L L V A PL + SR +VGPEG
Sbjct: 142 G-RSSLPLIHPPLALEDWL-RGRDDDLRLVLHPVAAPLASHAPPSRLA----FLVGPEGG 195
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
++ EV + AG + LGP LR ETA + LA
Sbjct: 196 LSDAEVEQAQAAGFHSARLGPRVLRTETAPVVALAV 231
>gi|418289062|ref|ZP_12901455.1| hypothetical protein TIGR00046 [Neisseria meningitidis NM233]
gi|372200388|gb|EHP14470.1| hypothetical protein TIGR00046 [Neisseria meningitidis NM233]
Length = 241
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 112/247 (45%), Gaps = 24/247 (9%)
Query: 41 RGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV 100
R +P S G V + + H+ VLR+ N+ + LF+GKG + +++ +
Sbjct: 3 RFHLPENLSVGQTVALPDNIVRHLN-VLRVRPNENITLFDGKGKAHAARLTVLEKRRAEA 61
Query: 101 VAL-EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
L ED + N+ G R D+ ++K ELG ++ P+++E + R
Sbjct: 62 EILHED---TTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCI-VRLD 117
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
G+ + + ++ G + PP +LP++ + +E+T
Sbjct: 118 GERAAKRLARWQEIVISACEQSGRNTV------PP-----VLPIIGYREALDKMPSESTK 166
Query: 220 LVTALSSSRN-----ESSGLII--VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
L+ +++ +R SG I+ VGPEG +TE+E + EAG AV LG LR ETA
Sbjct: 167 LIMSINRARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGFQAVTLGKRILRTETAP 226
Query: 273 IALLATL 279
+A LA +
Sbjct: 227 LAALAAM 233
>gi|409436208|ref|ZP_11263400.1| conserved hypothetical protein [Rhizobium mesoamericanum STM3625]
gi|408752118|emb|CCM74550.1| conserved hypothetical protein [Rhizobium mesoamericanum STM3625]
Length = 245
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 104/221 (47%), Gaps = 12/221 (5%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
+ G V D F ++ VLR++ ++ +FNG+ G + + R + +VA E +
Sbjct: 16 LTAGATVETTADNFNYLANVLRMTDGAQLLIFNGRDGEWKARLTFPTRKRIVLVAEEQTR 75
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
Q + F LK GR D+LV+K E+GA ++ P++T+ H+Q KI + L
Sbjct: 76 ---AQPAPSELHYLFAPLKVGRLDYLVQKAVEMGAGTLRPVMTQ-HVQG-KITNLDKLRA 130
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSS 227
N + +A G + + V P D L S ++ + +A + S
Sbjct: 131 N-----VIEAAEQCGILHIPD-VAEPVRLFDLLEQWPSDRRIIYCDEGDAGQNPMPVLSE 184
Query: 228 RNESSGLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLR 267
+E ++VGPEG F+E+E +++ TA+ LGP LR
Sbjct: 185 ISERKLALLVGPEGGFSEEERARLLSLDFVTAIPLGPRILR 225
>gi|388454973|ref|ZP_10137268.1| 16S ribosomal RNA methyltransferase RsmE [Fluoribacter dumoffii
Tex-KL]
Length = 242
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 109/242 (45%), Gaps = 22/242 (9%)
Query: 45 PRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE 104
P F +V + + H+ VLR+ +++ LF G + I+ + + + V+ +
Sbjct: 9 PGNFYTDQLVELSPEASQHVGVVLRMQAGEKITLFCGDNREFDATIEAVKKKQVTVI-IG 67
Query: 105 DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGF 164
+K V + + + A KG R +++++K ELG S+TP++TE + K+
Sbjct: 68 SIKEV-SRESPLTIHLAQAISKGERMEFVMQKAVELGVASITPVITERCV--VKLDKERL 124
Query: 165 LSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTAL 224
+ I +A G+ MV NPP+ +D S+ A E L+
Sbjct: 125 AKKLHQWQAIVIAACEQSGRNQVPMV-NPPVTLDAY------SRKA----QEGLKLILHP 173
Query: 225 SSSRN------ESSGL-IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
+N E+S + +++GPEG + +EV E G + LGP LR ETA I L+
Sbjct: 174 GGEKNWRDYLIEASAIALLIGPEGGLSNQEVQFACEHGFQPLSLGPRILRTETAAITALS 233
Query: 278 TL 279
L
Sbjct: 234 VL 235
>gi|326404264|ref|YP_004284346.1| hypothetical protein ACMV_21170 [Acidiphilium multivorum AIU301]
gi|325051126|dbj|BAJ81464.1| hypothetical protein ACMV_21170 [Acidiphilium multivorum AIU301]
Length = 226
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 96/235 (40%), Gaps = 17/235 (7%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
S G + + ++ V+R DR+ +FN G I +DR +V +
Sbjct: 1 MSPGATLATSAAQAHYLGAVMRRRAGDRLLVFNAGSGEFAATIGALDRRAATLVLGARTR 60
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
P+ W FA L+ + +VEK TELG + P+LT +R D
Sbjct: 61 APEPEPDCWLCFA---PLRRDMTELVVEKATELGVSRLVPVLTARTQPARLRADR----- 112
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIA-EATPLVTALSS 226
IA A +RL + P + L S+ FVA A P LS
Sbjct: 113 ---LAAIATEA-AEQSERLTIPDIAEPAPLAAFLASFPPSRRLFVAAERHAAP---PLSP 165
Query: 227 SRNESSGLIIVGPEGDFTEKEVNKIV-EAGATAVGLGPHRLRVETATIALLATLM 280
+ ++VGPEG +E++ + A + V LGP LR ETA IA LA L+
Sbjct: 166 ADPLQPHALLVGPEGGLAPEELDAMARHAFVSPVTLGPRILRAETAAIAGLARLL 220
>gi|270296112|ref|ZP_06202312.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270273516|gb|EFA19378.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 232
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 102/242 (42%), Gaps = 41/242 (16%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRID-RTGLDVVALEDLKLVLPQHTQW- 116
+E H +VLRL D V L +GKG C R + T + L ++ LPQ W
Sbjct: 18 EEAAHAVRVLRLQAGDEVMLTDGKG-----CFYRAEISTATNKRCLVNILETLPQAPLWK 72
Query: 117 -NVFAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
++ A K R +W EK TE+G +T FL+C F +
Sbjct: 73 GHLHIAMAPTKNMDRTEWFAEKATEIGFDELT-----------------FLNCRFSERKV 115
Query: 175 ANSAFVYG------GQRLHEMV--LNPPMKIDGLL--PLVSQSKLAFVAIAEATPLVTAL 224
+ + Q L + LN + + P Q +A E PL+ +
Sbjct: 116 IKTERISKILVSAIKQSLKARLPQLNEMTDFNKFITQPFPGQKFIAHCYEGEK-PLLKDM 174
Query: 225 SSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSD 284
++ L+++GPEGDF+E+EV K E + LG RLR ETA AL+A +L
Sbjct: 175 VHPGEDA--LVLIGPEGDFSEEEVRKATENDFIPISLGKSRLRTETA--ALVACHILNLQ 230
Query: 285 SQ 286
+Q
Sbjct: 231 NQ 232
>gi|422695355|ref|ZP_16753343.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX4244]
gi|424759338|ref|ZP_18187004.1| RNA methyltransferase, RsmE family [Enterococcus faecalis R508]
gi|315147638|gb|EFT91654.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX4244]
gi|402404796|gb|EJV37409.1| RNA methyltransferase, RsmE family [Enterococcus faecalis R508]
Length = 245
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 111/249 (44%), Gaps = 33/249 (13%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVEL-FNGKGGLIEGCIQRIDRTGL--DVVALE 104
+ + + +V + + H+ +V+R++ NDR L F K ++ ++ ID T + ++ E
Sbjct: 5 YQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVE-IDPTSVYFKEISKE 63
Query: 105 DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQ------SVTPLLTELHLQSRK 158
++ LP V A G KG + +W+V+K TELG + T ++ H + R
Sbjct: 64 EMDKELP----IEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDH-KKRA 118
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPM--KIDGLLPLVSQSKLAFVAIAE 216
+ IA A Q + N + K ++ VA E
Sbjct: 119 AKEKRLQK-------IATEA---AEQSHRQQTPNVSLVEKTQEIIAQFDSYDTVLVAYEE 168
Query: 217 A------TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
+ + L LS+ + + ++ GPEG F +E+ + ++AGA GLGP LR ET
Sbjct: 169 SAKQGEKSQLAQVLSTCQPGARLCVLFGPEGGFAPQEIEQFLQAGAKLCGLGPRILRAET 228
Query: 271 ATIALLATL 279
A + LL+ +
Sbjct: 229 APLYLLSAV 237
>gi|298369579|ref|ZP_06980896.1| RNA methyltransferase, RsmE family [Neisseria sp. oral taxon 014
str. F0314]
gi|298282136|gb|EFI23624.1| RNA methyltransferase, RsmE family [Neisseria sp. oral taxon 014
str. F0314]
Length = 241
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 111/250 (44%), Gaps = 31/250 (12%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRID--RT 96
+PRF+ S G V + + H+ VLRL ++ + LFNG G + ++ R
Sbjct: 1 MPRFYLSEVLSAGRAVSLPDNVVRHL-HVLRLKPDEEIVLFNGDGKAYPARLGVLEKRRA 59
Query: 97 GLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
+++ E+ + N+ G R D+ ++K ELG + P+L+E
Sbjct: 60 TAEILREEEAD----NESPLNITLVQAVSSGERMDFTLQKSVELGVGEIRPVLSE-RCVV 114
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAE 216
R G+ + + ++ G + +LPLVS + +E
Sbjct: 115 RLDGERAAKRVARWQEIVVSACEQSGRN-----------TVPQVLPLVSYQEALRQMPSE 163
Query: 217 ATPLVTALSSSRN------ESSGLI-IVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVE 269
T L+ ++ +++ S GLI +VGPEG +TE E + AG AV LGP LR E
Sbjct: 164 KTKLLMSVRNAQKLNRITPSSDGLIFMVGPEGGWTESEEQQAFGAGFQAVTLGPRVLRTE 223
Query: 270 TATIALLATL 279
TA++A +A +
Sbjct: 224 TASLAAIAAM 233
>gi|406946679|gb|EKD77804.1| hypothetical protein ACD_42C00171G0004 [uncultured bacterium]
Length = 225
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 103/225 (45%), Gaps = 23/225 (10%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE--------DLKLVLPQHT 114
H+ +VLR +R +FNG+GG + + ++ V E LK+ L Q
Sbjct: 9 HLLQVLRKKVGERFIIFNGQGGEFDATLISSNKKTACVAIGEFHERNTESPLKIHLGQ-- 66
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
G +G R D+ ++K ELG +TPL TE ++ +N ++ I
Sbjct: 67 --------GISRGERMDYAIQKSVELGVAEITPLFTEFC--QVQLSENRIEKRVAHWQAI 116
Query: 175 ANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGL 234
A SA G+ + +V P ++ + + S L + T +T+ ++S ++
Sbjct: 117 AISAAEQSGRCVVPVVHTPISFLEWIQK--NNSTLKLICCPRQTETLTSENNSTPKNIA- 173
Query: 235 IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
I++G EG F+++E+ ++ + LGP LR ETAT+ L L
Sbjct: 174 IVIGAEGGFSDREIALALQEKFSTFSLGPRILRTETATVVALTLL 218
>gi|312144013|ref|YP_003995459.1| hypothetical protein Halsa_1682 [Halanaerobium hydrogeniformans]
gi|311904664|gb|ADQ15105.1| protein of unknown function DUF558 [Halanaerobium hydrogeniformans]
Length = 250
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 107/237 (45%), Gaps = 14/237 (5%)
Query: 51 GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTG--LDVVALEDLKL 108
G + ++G+++ H+ LRL+ DRV + + G +E I L+V+ E +
Sbjct: 13 GEKISIQGNDYNHLKNSLRLNIGDRVIVSDKDGFDLEAKIVSFQEESAELEVINREKSSV 72
Query: 109 VLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCN 168
Q NV A G K + D +VEK TE+G +++ PL +E + +
Sbjct: 73 ----EAQLNVVLAQGLPKKRKMDLIVEKATEIGFKAMIPLESERSIV--RYNHKKKEKKL 126
Query: 169 FYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTA----L 224
+ +A +A G+ + + N L L Q + +
Sbjct: 127 KRWQRVAEAAAKQSGRSIIPEIKNF-YSTSSLKDLKDQFDFRLILWEDENKFSLKNFFNQ 185
Query: 225 SSSRNESSGLIIVGPEGDFTEKEVNKIV-EAGATAVGLGPHRLRVETATIALLATLM 280
++ ++++S L+I+GPEG F+E EV K+ + A + LGP +R ETA IA L L+
Sbjct: 186 NNVKSDASILLIIGPEGGFSEDEVEKLKNDLDAETITLGPRIMRTETAGIAALCCLL 242
>gi|121635582|ref|YP_975827.1| 16S ribosomal RNA methyltransferase RsmE [Neisseria meningitidis
FAM18]
gi|421545241|ref|ZP_15991305.1| 16S rRNA methyltransferase RsmE [Neisseria meningitidis NM140]
gi|421547289|ref|ZP_15993327.1| 16S rRNA methyltransferase RsmE [Neisseria meningitidis NM183]
gi|421548261|ref|ZP_15994289.1| 16S rRNA methyltransferase RsmE [Neisseria meningitidis NM2781]
gi|421553496|ref|ZP_15999457.1| 16S rRNA methyltransferase RsmE [Neisseria meningitidis NM576]
gi|421566187|ref|ZP_16011943.1| 16S rRNA methyltransferase RsmE [Neisseria meningitidis NM3081]
gi|421568417|ref|ZP_16014141.1| 16S rRNA methyltransferase RsmE [Neisseria meningitidis NM3001]
gi|433522608|ref|ZP_20479290.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
61103]
gi|120867288|emb|CAM11059.1| hypothetical protein NMC1899 [Neisseria meningitidis FAM18]
gi|402321318|gb|EJU56793.1| 16S rRNA methyltransferase RsmE [Neisseria meningitidis NM140]
gi|402321652|gb|EJU57125.1| 16S rRNA methyltransferase RsmE [Neisseria meningitidis NM183]
gi|402326983|gb|EJU62381.1| 16S rRNA methyltransferase RsmE [Neisseria meningitidis NM2781]
gi|402327984|gb|EJU63366.1| 16S rRNA methyltransferase RsmE [Neisseria meningitidis NM576]
gi|402340796|gb|EJU75987.1| 16S rRNA methyltransferase RsmE [Neisseria meningitidis NM3081]
gi|402341491|gb|EJU76668.1| 16S rRNA methyltransferase RsmE [Neisseria meningitidis NM3001]
gi|432257572|gb|ELL12869.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
61103]
Length = 241
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 112/247 (45%), Gaps = 24/247 (9%)
Query: 41 RGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV 100
R +P S G V + + H+ VLR+ N+ + LF+GKG + +++ +
Sbjct: 3 RFHLPENLSVGQTVALPDNIVRHLN-VLRVRPNENITLFDGKGKAHAARLSFLEKRRAEA 61
Query: 101 VAL-EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
L ED + N+ G R D+ ++K ELG ++ P+++E + R
Sbjct: 62 EILHED---TTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCI-VRLD 117
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
G+ + + ++ G + PP +LP++ + +E+T
Sbjct: 118 GERAAKRLARWQEIVISACEQSGRNTV------PP-----VLPIIGYREALDKMPSESTK 166
Query: 220 LVTALSSSRN-----ESSGLII--VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
L+ +++ +R SG I+ VGPEG +TE+E + EAG AV LG LR ETA
Sbjct: 167 LIMSINRARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGFQAVTLGKRILRTETAP 226
Query: 273 IALLATL 279
+A LA +
Sbjct: 227 LAALAAM 233
>gi|99078057|ref|YP_611315.1| 16S ribosomal RNA methyltransferase RsmE [Ruegeria sp. TM1040]
gi|99035195|gb|ABF62053.1| protein of unknown function DUF558 [Ruegeria sp. TM1040]
Length = 246
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 105/234 (44%), Gaps = 21/234 (8%)
Query: 51 GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK-LV 109
G V ++ D+ ++ V+RLS RV LFNG+ G + + + G + LE K L
Sbjct: 16 GQTVPLDRDQAHYLFGVMRLSVAARVALFNGRDGEWQAEVAEAGKRGGVLACLEQSKPLQ 75
Query: 110 LPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNF 169
LP +++ F +K R D++VEK E+GA + P+ TE R D
Sbjct: 76 LPP----DLWLIFAPIKKARTDFIVEKAAEMGAARILPVATEFTNSERIRQDR------- 124
Query: 170 YYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLP-LVSQSKLAFVAIAEATPLVTALSSSR 228
+A GG + E+ K+ LL ++ +L F AE + +
Sbjct: 125 LQAHAVEAAEQCGGTYVPEVA--ELQKLPSLLDHWPAERQLMFCDEAEIGQRLFLDVAQV 182
Query: 229 NESSG-----LIIVGPEGDFTEKEVNKI-VEAGATAVGLGPHRLRVETATIALL 276
S+G I++GPEG F++ E ++ A V LGP LR +TA +A L
Sbjct: 183 EGSAGAAGPWAILIGPEGGFSDAERKRLHAMPQAHVVSLGPRILRADTAAVAAL 236
>gi|384266154|ref|YP_005421861.1| ribosomal RNA small subunit methyltransferase E [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|387899176|ref|YP_006329472.1| 16S ribosomal RNA methyltransferase [Bacillus amyloliquefaciens Y2]
gi|380499507|emb|CCG50545.1| ribosomal RNA small subunit methyltransferase E [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|387173286|gb|AFJ62747.1| 16S ribosomal RNA methyltransferase [Bacillus amyloliquefaciens Y2]
Length = 256
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 100/242 (41%), Gaps = 33/242 (13%)
Query: 55 RVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHT 114
++ G++ H+ V+R+S DR+ + K G C+ L V+ + + + + T
Sbjct: 20 QITGEDVHHIANVMRMSAGDRI-ICCSKDGHEALCL-------LKEVSKDHISCSIAEWT 71
Query: 115 QWN------VFAAFGTLKGGRADWLVEKCTELGAQSVTPL-----------LTELHLQSR 157
N + A G KG + +W+++K TELGA P + R
Sbjct: 72 GENRELPLKIRIASGLPKGDKLEWIIQKGTELGASMFIPFQGARSVVKLDDKKAKKKRER 131
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA 217
+ Y I VY ++L EM N +D + +S E
Sbjct: 132 WAKIAKEAAEQSYRNEIPEVKTVYTFRQLLEMAEN----VDKCVVAYEESSKQ----GET 183
Query: 218 TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
L S SS LI+ GPEG TE EV+++ E GA GLGP LR ETA + L+
Sbjct: 184 GAFAAELKSLPQGSSLLIVFGPEGGLTESEVHQLSEKGAVLCGLGPRILRTETAPLYALS 243
Query: 278 TL 279
+
Sbjct: 244 AV 245
>gi|304437370|ref|ZP_07397329.1| RsmE family RNA methyltransferase [Selenomonas sp. oral taxon 149
str. 67H29BP]
gi|304369626|gb|EFM23292.1| RsmE family RNA methyltransferase [Selenomonas sp. oral taxon 149
str. 67H29BP]
Length = 247
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 31/239 (12%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQH 113
+ + G + H+ +V+R D + + + G E + + R D V L ++ VLP
Sbjct: 14 IAITGGDAHHLARVMRAQIGDVITVVDAAGQAAEMAVTELAR---DAVHLR-MQRVLPVE 69
Query: 114 TQ-WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYG 172
T+ V LKG + D++V+K ELGA V P++TE H+ R + +
Sbjct: 70 TEGREVILVQALLKGEKMDFVVQKAAELGAVCVCPIVTE-HVVVRYDAKKTAVKAARWQK 128
Query: 173 FIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKL----AFVAIAEATPLVTALSSSR 228
IA+ A G+R+ M++ P+VS ++L A++ A+ + R
Sbjct: 129 -IADEAAKQCGRRM-------LMRV---APIVSLTELLRDPAYIDAADTATVFCYEQEER 177
Query: 229 NESSGL----------IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
+ +IVG EG F+ E + AG +V LG LR ETA++ LA
Sbjct: 178 QSMRTVLRGTEARRVTLIVGAEGGFSPAEATAVTAAGGQSVSLGHRILRAETASLTALA 236
>gi|421863002|ref|ZP_16294704.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309379533|emb|CBX21899.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 241
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 112/247 (45%), Gaps = 24/247 (9%)
Query: 41 RGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV 100
R +P S G V + + H+ VLR+ N+ + LF+GKG + +++ +
Sbjct: 3 RFHLPENLSVGQTVALPDNIVRHLN-VLRVRPNENITLFDGKGKAHAAQLTVLEKRRAEA 61
Query: 101 VAL-EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
L ED + N+ G R D+ ++K ELG ++ P+++E + R
Sbjct: 62 EILHED---TTDNESPLNITLIQSISSGDRMDFTLQKSVELGITAIQPVISERCI-VRLD 117
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
G+ + + ++ G + PP +LP++ + +E+T
Sbjct: 118 GERAAKRLARWQEIVISACEQSGRNTV------PP-----VLPIIGYREALDKMPSESTK 166
Query: 220 LVTALSSSRN-----ESSGLII--VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
L+ +++ +R SG I+ VGPEG +TE+E + EAG AV LG LR ETA
Sbjct: 167 LIMSINRARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGFQAVTLGKRILRTETAP 226
Query: 273 IALLATL 279
+A LA +
Sbjct: 227 LAALAAM 233
>gi|414582369|ref|ZP_11439509.1| ribosomal RNA small subunit methyltransferase E [Mycobacterium
abscessus 5S-1215]
gi|420876935|ref|ZP_15340305.1| ribosomal RNA small subunit methyltransferase E [Mycobacterium
abscessus 5S-0304]
gi|420882438|ref|ZP_15345802.1| ribosomal RNA small subunit methyltransferase E [Mycobacterium
abscessus 5S-0421]
gi|420888631|ref|ZP_15351984.1| ribosomal RNA small subunit methyltransferase E [Mycobacterium
abscessus 5S-0422]
gi|420893978|ref|ZP_15357320.1| ribosomal RNA small subunit methyltransferase E [Mycobacterium
abscessus 5S-0708]
gi|420898631|ref|ZP_15361967.1| ribosomal RNA small subunit methyltransferase E [Mycobacterium
abscessus 5S-0817]
gi|420904297|ref|ZP_15367617.1| ribosomal RNA small subunit methyltransferase E [Mycobacterium
abscessus 5S-1212]
gi|420971268|ref|ZP_15434464.1| ribosomal RNA small subunit methyltransferase E [Mycobacterium
abscessus 5S-0921]
gi|392089556|gb|EIU15373.1| ribosomal RNA small subunit methyltransferase E [Mycobacterium
abscessus 5S-0304]
gi|392091493|gb|EIU17304.1| ribosomal RNA small subunit methyltransferase E [Mycobacterium
abscessus 5S-0421]
gi|392092245|gb|EIU18054.1| ribosomal RNA small subunit methyltransferase E [Mycobacterium
abscessus 5S-0422]
gi|392102568|gb|EIU28355.1| ribosomal RNA small subunit methyltransferase E [Mycobacterium
abscessus 5S-0708]
gi|392107872|gb|EIU33654.1| ribosomal RNA small subunit methyltransferase E [Mycobacterium
abscessus 5S-0817]
gi|392108121|gb|EIU33902.1| ribosomal RNA small subunit methyltransferase E [Mycobacterium
abscessus 5S-1212]
gi|392117521|gb|EIU43289.1| ribosomal RNA small subunit methyltransferase E [Mycobacterium
abscessus 5S-1215]
gi|392171675|gb|EIU97351.1| ribosomal RNA small subunit methyltransferase E [Mycobacterium
abscessus 5S-0921]
Length = 258
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 105/238 (44%), Gaps = 23/238 (9%)
Query: 44 IPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL--DVV 101
+PR S G V ++GDE H +VLR+ + V + +G G + +G + +DRTGL DV
Sbjct: 9 VPRVPSAGEQVLLDGDEGHHAARVLRMRVGEPVMVCDGAGEVGDGVVASVDRTGLAIDVT 68
Query: 102 ALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTP-----LLTELHLQS 156
+ V P+ T V A K R++ V+ E GA V P ++
Sbjct: 69 GRWSVAAVDPKVT---VVQAL--PKSDRSELAVDLAVEAGADEVIPWQAQRCVSRWDAHK 123
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMV----LNPPMKIDGLLPLVSQSKLAFV 212
+ G + + + A+V LH L DG + LV L
Sbjct: 124 AEKGRRRWEAVAQAASRQSRRAYVPSVPELHSTAQLAELVGARAADGAVVLV----LHES 179
Query: 213 AIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
A + L LSS+ SS ++IVGPEG ++E+ + +AGA V LGP LR +
Sbjct: 180 AESGLGALAARLSSA---SSVVLIVGPEGGVADEELRILADAGAAPVRLGPTVLRTSS 234
>gi|340027984|ref|ZP_08664047.1| 16S ribosomal RNA methyltransferase RsmE [Paracoccus sp. TRP]
Length = 239
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 108/233 (46%), Gaps = 18/233 (7%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
++G + + D+ +++ V+R S D + +FNG+ G I+RI + ++A +
Sbjct: 12 LAKGQGIELNTDQAHYLSSVMRQSAGDEILVFNGRDGEWLARIERIAKRNGTLIAE---R 68
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
PQ +++ F +K R D++VEK E+GA + P+ T+ H S +I + +
Sbjct: 69 QSAPQMNPPDLWLIFAPIKKARTDFIVEKAAEMGAARILPVQTD-HTNSERIRQDRLQAH 127
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMK--IDGLLPLVSQSKLAFVAIAEATPLVTALS 225
FV + E+V P+ +DG + ++ + A A P T
Sbjct: 128 AIEAAEQCGGTFV---PEVGELV---PLSRLLDG---WDTGRRILWADEALAGPAQTLAG 178
Query: 226 SSRNESSGLIIVGPEGDFTEKEVNKIVEAGATA-VGLGPHRLRVETATIALLA 277
+ I++GPEG ++E E ++ A + LGP LR +TA +A LA
Sbjct: 179 LPHGPWA--ILIGPEGGWSESERRRLSAMDCVARISLGPRILRADTAAVASLA 229
>gi|118594425|ref|ZP_01551772.1| hypothetical protein MB2181_02115 [Methylophilales bacterium
HTCC2181]
gi|118440203|gb|EAV46830.1| hypothetical protein MB2181_02115 [Methylophilales bacterium
HTCC2181]
Length = 246
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 100/228 (43%), Gaps = 25/228 (10%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE--------DLKLVLPQHT 114
H T V+RL +D++ LFN I RI + ++VV DLK+ L Q
Sbjct: 25 HATNVMRLKLSDKIILFNNDVYDFGAEIIRISKNRVEVVIQSKIANRKDSDLKIRLIQSI 84
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
+ DW+++K ELG ++ P+ ++ + D + + I
Sbjct: 85 S----------STEKMDWIIQKSVELGVHTIVPIFSQRSIIKLN-NDRAEKKLSHWKQII 133
Query: 175 ANSAFVYGGQRLHEMVLNPPMKIDGLLP---LVSQSKLAFVAIAEATPLVTALSSSRNES 231
++ G ++ E+ + P K D + ++ L + A +S+ + S
Sbjct: 134 QSACEQCGRSKVPEIFI--PKKFDAFWSNETISNKDHLKLILSPLAKNSFRTISTIK-PS 190
Query: 232 SGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
+ I++GPEG F+E+EV + G +GP LR ETA +A+LA L
Sbjct: 191 AIDIMIGPEGGFSEEEVVNAEKNGFIPFEIGPRILRTETAPLAMLALL 238
>gi|90426187|ref|YP_534557.1| 16S ribosomal RNA methyltransferase RsmE [Rhodopseudomonas
palustris BisB18]
gi|90108201|gb|ABD90238.1| protein of unknown function DUF558 [Rhodopseudomonas palustris
BisB18]
Length = 251
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 104/222 (46%), Gaps = 24/222 (10%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCI---QRIDRTGLDVVALEDLKLVLPQHTQWNVF 119
++ VLRLS V +FNG+ G + I +R+DR LD+++ + LP +V
Sbjct: 32 YLGNVLRLSAGAAVLVFNGRDGEWQAMIGAGKRVDR--LDILSRARAQDGLP-----DVT 84
Query: 120 AAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAF 179
F LK R D++V+K E+GA ++ P+LT +R ++ + +A
Sbjct: 85 YVFAPLKHARLDYMVQKAIEMGACALQPVLTRFTQVTR-------VNTERMRANVIEAAE 137
Query: 180 VYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVA--IAEATPLVTALSSSRNESSGLI-- 235
G L + P+K++ L +L AE V AL +R +S I
Sbjct: 138 QCG--ILSIAAVEEPLKLERYLSTRDTGRLLVFCDEAAEVADPVAALGGARERASAGIDV 195
Query: 236 IVGPEGDFTEKEVNKIV-EAGATAVGLGPHRLRVETATIALL 276
++GPEG F E+E ++ + + LGP +R +TA +A L
Sbjct: 196 VIGPEGGFAEEERALLLRQPNILRLALGPRIMRADTAAVAAL 237
>gi|333371676|ref|ZP_08463620.1| RsmE family RNA methyltransferase [Desmospora sp. 8437]
gi|332975772|gb|EGK12653.1| RsmE family RNA methyltransferase [Desmospora sp. 8437]
Length = 248
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 100/231 (43%), Gaps = 15/231 (6%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQH 113
+ V GD+ H+ V+R+ DR+ + +G ++ + LE ++
Sbjct: 16 ITVRGDDVHHIKNVMRMRAGDRLICCDSRGTDYLAELETVSEGEARCRILE--RMPSRGE 73
Query: 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLL---TELHLQSRKIGDNGFLSCNFY 170
++ V A KG + +W+++K TELGA S P + T + +K
Sbjct: 74 PRFRVAVAASLTKGDKWEWVLQKGTELGAASFLPFISARTVVKWDGKKADKK-----KER 128
Query: 171 YGFIANSAF--VYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSR 228
+ IA A + GQ H + M LL A + + A+
Sbjct: 129 WQRIAKEAAEQSHRGQIPH---VETVMDWRSLLERFPAFDRVLFAYEKGGRSLGAVLREV 185
Query: 229 NESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
L+++GPEG FTE E ++ V AGA ++ LGP LR ETA +ALL+ +
Sbjct: 186 TGERMLVVIGPEGGFTETEKSEAVAAGAVSIHLGPRILRAETAPLALLSCI 236
>gi|254804259|ref|YP_003082480.1| 16S ribosomal RNA methyltransferase RsmE [Neisseria meningitidis
alpha14]
gi|304388478|ref|ZP_07370582.1| 16S rRNA methyltransferase RsmE [Neisseria meningitidis ATCC 13091]
gi|254667801|emb|CBA03770.1| conserved hypothetical protein [Neisseria meningitidis alpha14]
gi|304337534|gb|EFM03699.1| 16S rRNA methyltransferase RsmE [Neisseria meningitidis ATCC 13091]
Length = 241
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 114/249 (45%), Gaps = 29/249 (11%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRF+ S G V + + H+ VLR+ N+ + LF+GKG + +++
Sbjct: 1 MPRFYLPENLSVGQTVALPDNIVRHLN-VLRVRPNENITLFDGKGKAHAAQLTVLEKRRA 59
Query: 99 DVVAL-EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
+ L ED + N+ G R D+ ++K ELG ++ P+++E + R
Sbjct: 60 EAEILHED---TTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCI-VR 115
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA 217
G+ + + ++ G + PP +LP++ + +E+
Sbjct: 116 LDGERAAKRLARWQEIVISACEQSGRNTV------PP-----VLPIIGYREALDKMPSES 164
Query: 218 TPLVTALSSSRN-----ESSGLII--VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
T L+ +++ +R SG I+ VGPEG +TE+E + EAG AV LG LR ET
Sbjct: 165 TKLIMSINRARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGFQAVTLGKRILRTET 224
Query: 271 ATIALLATL 279
A +A +A +
Sbjct: 225 APLAAIAAM 233
>gi|282881481|ref|ZP_06290152.1| RNA methyltransferase, RsmE family [Prevotella timonensis CRIS
5C-B1]
gi|281304645|gb|EFA96734.1| RNA methyltransferase, RsmE family [Prevotella timonensis CRIS
5C-B1]
Length = 242
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 95/232 (40%), Gaps = 41/232 (17%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQW--NVFA 120
H +VLRLS+ D + L +G G + I T +++ LPQ W ++
Sbjct: 25 HALRVLRLSSGDEMFLMDGVGNFYRAIVT-IASTKH---CFYEIQETLPQQKSWRGHIHL 80
Query: 121 AFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANS-- 177
A K R +W+VEK TE+G +T FL+C F
Sbjct: 81 AIAPTKTMERIEWMVEKMTEIGFDEIT-----------------FLNCQFSERKQIRPIR 123
Query: 178 ------AFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP------LVTALS 225
A + ++ + V+NP + + IA P L+T L
Sbjct: 124 LEKIVIAAMKQSRKPWKPVVNPMVSYKNF---IHHQTTGHRYIAHCYPEIERKDLLTTLH 180
Query: 226 SSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
++ I+VGPEGDF+ EV +AG ++ LG +RLR ETA + +A
Sbjct: 181 QITDDDDITILVGPEGDFSVDEVKFAEQAGFESISLGKNRLRTETAGLMAVA 232
>gi|325983172|ref|YP_004295574.1| ribosomal RNA small subunit methyltransferase E [Nitrosomonas sp.
AL212]
gi|325532691|gb|ADZ27412.1| Ribosomal RNA small subunit methyltransferase E [Nitrosomonas sp.
AL212]
Length = 248
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 107/248 (43%), Gaps = 27/248 (10%)
Query: 45 PRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE 104
P + G I+ + + H T+VLRL + + +FNG GG I+ I ++ V L
Sbjct: 8 PEEITPGKIIELSAENKHHATRVLRLKNGNPITIFNGLGGEFSAHIEAISKSSATV--LI 65
Query: 105 DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGD 161
D + + ++ A + DW+++K ELG + P+ T +HL +
Sbjct: 66 DAYHHTDRESPLSIELAQAICINEKMDWIIQKSVELGITRIQPVFTARSIVHLSDER--- 122
Query: 162 NGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPL---VSQSKLAFVA----- 213
+ + I ++ G L +++ L+PL +SQ K + A
Sbjct: 123 -SYKRLQHWKKIIISACEQCGRNCLPQVL--------PLIPLAEWLSQKKTSHCANDVHL 173
Query: 214 --IAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA 271
T + +S +++ +++GPEG FT +E I +G + LG LR E+A
Sbjct: 174 MLSTRTTNGLKNISKPAADANITLVIGPEGGFTAEEETAISYSGFIPLRLGKRILRTESA 233
Query: 272 TIALLATL 279
+A +A +
Sbjct: 234 ALATIAAM 241
>gi|395786885|ref|ZP_10466612.1| RsmE family RNA methyltransferase [Bartonella tamiae Th239]
gi|423718196|ref|ZP_17692386.1| RsmE family RNA methyltransferase [Bartonella tamiae Th307]
gi|395423183|gb|EJF89379.1| RsmE family RNA methyltransferase [Bartonella tamiae Th239]
gi|395426629|gb|EJF92756.1| RsmE family RNA methyltransferase [Bartonella tamiae Th307]
Length = 246
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 119/254 (46%), Gaps = 28/254 (11%)
Query: 35 DYANQSRGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRID 94
DY R I + F +++ + ++ VLR+ D + LFNG+ G I +
Sbjct: 3 DYYKLQRLYIDQPFVLNEAIQLADQKAHYLIHVLRMKETDSILLFNGQDGEWLAHIHSVH 62
Query: 95 RTGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHL 154
+ L +LE +K V PQ ++ F LK R D++++K E+G S+ P++T+ H
Sbjct: 63 KKRL---SLELIKQVRPQPLTSHLKYCFAPLKHARFDYMIQKAVEMGVSSLQPVITD-HT 118
Query: 155 QSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQ-SKLAFVA 213
Q +I + AN+ + ++ + + + L L+++ S ++
Sbjct: 119 QVTRIN---------HERMKANA--IEAAEQCGILDIPQCLSAISLEKLLNEWSNDGYLI 167
Query: 214 IAEAT-------PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVE-AGATAVGLGPHR 265
+ T P++ AL ++ + ++VGPEG F+++E + + + + LGP
Sbjct: 168 FCDETDKKNNPLPILQAL----DKRAIAVLVGPEGGFSKEEQSFLKRWSFVIPIPLGPRI 223
Query: 266 LRVETATIALLATL 279
LR +TA IA L+ +
Sbjct: 224 LRADTAAIAALSVI 237
>gi|258647970|ref|ZP_05735439.1| RNA methyltransferase, RsmE family [Prevotella tannerae ATCC 51259]
gi|260851810|gb|EEX71679.1| RNA methyltransferase, RsmE family [Prevotella tannerae ATCC 51259]
Length = 255
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 105/255 (41%), Gaps = 47/255 (18%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
DE H+TKVLR+ + + + +GKG + + + V L + P
Sbjct: 21 DEAQHITKVLRMKEGEEIIITDGKGSFYKAALSLVTNKHCSVQLLSQ-ESARPLWKNKLE 79
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNF--------- 169
A T R +W VEK TE+G + F++C F
Sbjct: 80 IAVAPTKHLDRMEWFVEKATEIGVDQI-----------------NFVACEFSERKQIKIE 122
Query: 170 YYGFIANSAFVYGGQ----RLHEMV-----LNPPMKIDGLLPLVSQSKLAFVAIAEATPL 220
IA SA + ++ EM+ +N P +G + + + A+++P
Sbjct: 123 RMNRIAISAMKQSHKAILPQIPEMITFNAFINRPF--EGKRYIAHCYNMENICDADSSPT 180
Query: 221 --VTALSSS-------RNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA 271
T++ SS + E S +++GPEGDF+ +EV + AG V LG RLR ETA
Sbjct: 181 NASTSIHSSAFLGQLLKGEESTQVLIGPEGDFSMREVEAAMAAGFIPVSLGNSRLRTETA 240
Query: 272 TIALLATLMLCSDSQ 286
+ + + L + +Q
Sbjct: 241 ALVAVHLMNLANSTQ 255
>gi|325284031|ref|YP_004256572.1| Ribosomal RNA small subunit methyltransferase E [Deinococcus
proteolyticus MRP]
gi|324315840|gb|ADY26955.1| Ribosomal RNA small subunit methyltransferase E [Deinococcus
proteolyticus MRP]
Length = 236
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 106/238 (44%), Gaps = 19/238 (7%)
Query: 44 IPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVAL 103
+P G + + G E H+ V+RL D + +F+G+G + +D + +
Sbjct: 11 LPADLEAGPELVLTGGEVRHL-GVMRLGAGDPLLVFDGRGREARAEVTALDGLRATLRLV 69
Query: 104 EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNG 163
E+L T V A LKG + +V TELG + L+T+ H R IG N
Sbjct: 70 EELPGT--PETPQPVTLAVALLKGDKLADVVRAATELGVARIQLLVTQ-HADVRDIGANK 126
Query: 164 FLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTA 223
N +A A + + VL PP+ + L + A+VA P V
Sbjct: 127 LARLNR----VAAEASKQSRRAVTPEVL-PPVPLAAL----TWEGQAYVA----HPYVHD 173
Query: 224 LSSSRN--ESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
L SS +S ++ GPEG F+E E+ ++ GA V LGP LR ETA +ALL +
Sbjct: 174 LLSSHLHWDSPVTLLTGPEGGFSESEMEALLSRGAQGVVLGPRILRAETAPLALLGAI 231
>gi|440225630|ref|YP_007332721.1| hypothetical protein RTCIAT899_CH03810 [Rhizobium tropici CIAT 899]
gi|440037141|gb|AGB70175.1| hypothetical protein RTCIAT899_CH03810 [Rhizobium tropici CIAT 899]
Length = 245
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 14/219 (6%)
Query: 51 GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVL 110
G + + D+F ++ VLR+ + +FNG+ G + + R + + LE+ +
Sbjct: 19 GAAIETDHDQFNYLANVLRMDNGAELLIFNGRDGEWKAGVSFPSRKRILLTPLEETR--- 75
Query: 111 PQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFY 170
PQ ++ F LK GR D+LV+K E+GA + P++T+ H+Q KI + + N
Sbjct: 76 PQPAPSDLHYLFAPLKVGRLDYLVQKAVEMGAGLLQPVMTQ-HVQG-KITNLDKVRANVI 133
Query: 171 YGFIANSAFVYGGQRLHEMVLNPPMKIDGLLP-LVSQSKLAFVAIAEATPLVTALSSSRN 229
A + G + E P+K+ LL + ++ + +A L +
Sbjct: 134 EA--AEQCGILGIPDVAE-----PVKLTDLLASWPHERRIIYCDEGDAGQNPLPLLTQVK 186
Query: 230 ESSGLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLR 267
E ++VGPEG F+E+E + + TA+ LGP LR
Sbjct: 187 EKHLALLVGPEGGFSEEERALLRDLDFVTAIPLGPRILR 225
>gi|319651611|ref|ZP_08005738.1| hypothetical protein HMPREF1013_02350 [Bacillus sp. 2_A_57_CT2]
gi|317396678|gb|EFV77389.1| hypothetical protein HMPREF1013_02350 [Bacillus sp. 2_A_57_CT2]
Length = 249
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 108/254 (42%), Gaps = 31/254 (12%)
Query: 44 IPRFFSQGGIVR----VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
+ R+F++ + ++G++ H+ KV+R+ D++ C+ + + L
Sbjct: 1 MQRYFTENAVKENVFLIKGEDRHHIVKVMRMKEGDQI-----------ICVDQSQNSALC 49
Query: 100 VVALEDLKLVLPQHTQW---------NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLT 150
+A + V + QW N+ G KG + +W+++K TELGA P +
Sbjct: 50 AIAEITDEHVAAEVVQWIEGSSELPANITIVSGLPKGDKLEWIIQKGTELGAHRFIPFTS 109
Query: 151 ELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPL--VSQSK 208
+ K + + IA A + + V P L S
Sbjct: 110 ARSV--VKWDAKKSVKKAERWQKIAKEAAEQSHRTMVPEVFAPLDLKSLLKLSGDYSYKL 167
Query: 209 LAFVAIA---EATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHR 265
+AF A E + L L+S S +++ GPEG ++ EV+ + EAG A GLGP
Sbjct: 168 IAFEEEAKQGEDSVLYKTLTSMNKGQSLMVVFGPEGGLSDNEVSLLQEAGFVACGLGPRI 227
Query: 266 LRVETATIALLATL 279
LR ETA + LL+ +
Sbjct: 228 LRTETAPLYLLSAV 241
>gi|336434374|ref|ZP_08614170.1| hypothetical protein HMPREF0991_03289 [Lachnospiraceae bacterium
2_1_58FAA]
gi|336013920|gb|EGN43789.1| hypothetical protein HMPREF0991_03289 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 236
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 109/239 (45%), Gaps = 18/239 (7%)
Query: 50 QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRI--DRTGLDVVALE--D 105
QG + +EG + H+ VLR+ + V + + I+++ +R L +V + D
Sbjct: 2 QGENIYIEGTDVNHIVHVLRMKVGEEVSVHDDVNRKYLCRIEKLLEERVVLSIVEQQESD 61
Query: 106 LKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFL 165
+L P ++ G KG + +W+++KC ELG ++ P+ T+ + K+ +
Sbjct: 62 TELSCP------IYLFQGLPKGDKMEWIIQKCVELGVHAIVPVATKRAVV--KLDEKKAQ 113
Query: 166 SCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTA-- 223
+ IA SA G+ + VL P MK L Q + + +A +
Sbjct: 114 KKVNRWNAIAESAAKQSGRGIVPEVL-PVMKWKEALEYARQLDVKMIPYEKAAGINATKQ 172
Query: 224 --LSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
S S +S G I +GPEG F E EV E GA V LG LR ETA + +L+ LM
Sbjct: 173 LIASVSFGQSVG-IFIGPEGGFEEAEVEAAKEIGAVPVTLGRRILRTETAGMTILSILM 230
>gi|365122543|ref|ZP_09339444.1| RsmE family RNA methyltransferase [Tannerella sp. 6_1_58FAA_CT1]
gi|363642291|gb|EHL81649.1| RsmE family RNA methyltransferase [Tannerella sp. 6_1_58FAA_CT1]
Length = 233
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 95/226 (42%), Gaps = 20/226 (8%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
+E H KVLRLS + L +GKG + I V +E+++ + P + ++
Sbjct: 18 EESQHCIKVLRLSEGTEIMLTDGKGTFYKAIITLAHHKRCGVRIVEEIQALSPCPIKIHI 77
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTEL----HLQSRKIGDNGFLSCNFYYGFI 174
A T R +W EKCTE+G ++T L +++ +I L
Sbjct: 78 AIA-PTKNMDRIEWFAEKCTEIGINAITLLRCRFSERKEVKTERI--EKILVSAMKQSIK 134
Query: 175 ANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVA-IAEATPLVTALSSSRNESSG 233
A + G E V P +G F+A E + + ++
Sbjct: 135 ATLPQLNGMTTFKEFVTRP---FEGQ---------KFIAHCYEKSDKILLKQRYIPGNNA 182
Query: 234 LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
LI++GPEGDF+ +EV +E G + LG RLR ETA I T+
Sbjct: 183 LILIGPEGDFSPEEVELAIENGFLPISLGNSRLRTETAGIVACHTI 228
>gi|294155674|ref|YP_003560058.1| RNA methyltransferase, RsmE family [Mycoplasma crocodyli MP145]
gi|291599900|gb|ADE19396.1| RNA methyltransferase, RsmE family [Mycoplasma crocodyli MP145]
Length = 228
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 116/243 (47%), Gaps = 23/243 (9%)
Query: 44 IPRFFS---QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV 100
+ RFFS +G + ++ + H+ KV+R + + V +FN + E C++ D+ +
Sbjct: 1 MNRFFSDHKEGEYLLLDMNVLKHL-KVIRANNKNFVVVFNEE--FYECCLEN-DKAK--I 54
Query: 101 VALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIG 160
++ K+ + V A +K R +WL++K ELGA + P+++E H
Sbjct: 55 IS----KINEYHEIGYEVILAASIIKIDRYEWLLQKAIELGATRIVPIISE-HTDGSLYK 109
Query: 161 DNGFLSCNFYYGFIANSAFVYGGQRLHEMV--LNPPMKIDGLLPLVSQSKLAFVAIAEAT 218
+N F++ + I SA Q + L+ PM + + +A E
Sbjct: 110 NNKFINKYERFNSIIKSA---SEQSFRNKLIKLDNPMSFNEAIIKYRYINNKIIA-HEKI 165
Query: 219 PLVTALSSSRNESSGLII-VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
L + RN +S +II VGPEG +++KE++ V+ V LG LR E+A+I LL+
Sbjct: 166 DLEN--NDYRNINSDVIIFVGPEGGYSKKEIDLSVKNDYKVVSLGRRILRAESASIYLLS 223
Query: 278 TLM 280
L+
Sbjct: 224 QLI 226
>gi|154504512|ref|ZP_02041250.1| hypothetical protein RUMGNA_02016 [Ruminococcus gnavus ATCC 29149]
gi|153794994|gb|EDN77414.1| RNA methyltransferase, RsmE family [Ruminococcus gnavus ATCC 29149]
Length = 246
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 109/239 (45%), Gaps = 18/239 (7%)
Query: 50 QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRI--DRTGLDVVALE--D 105
QG + +EG + H+ VLR+ + V + + I+++ +R L +V + D
Sbjct: 12 QGENIYIEGTDVNHIVHVLRMKVGEEVSVHDDVNRKYLCRIEKLLEERVVLSIVEQQESD 71
Query: 106 LKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFL 165
+L P ++ G KG + +W+++KC ELG ++ P+ T+ + K+ +
Sbjct: 72 TELSCP------IYLFQGLPKGDKMEWIIQKCVELGVHAIVPVATKRAVV--KLDEKKAQ 123
Query: 166 SCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTA-- 223
+ IA SA G+ + VL P MK L Q + + +A +
Sbjct: 124 KKVNRWNAIAESAAKQSGRGIVPEVL-PVMKWKEALEYARQLDVKMIPYEKAAGINATKQ 182
Query: 224 --LSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
S S +S G I +GPEG F E EV E GA V LG LR ETA + +L+ LM
Sbjct: 183 LIASVSFGQSVG-IFIGPEGGFEEAEVEAAKEIGAVPVTLGRRILRTETAGMTILSILM 240
>gi|451940257|ref|YP_007460895.1| 16S ribosomal RNA methyltransferase RsmE [Bartonella australis
Aust/NH1]
gi|451899644|gb|AGF74107.1| 16S ribosomal RNA methyltransferase RsmE [Bartonella australis
Aust/NH1]
Length = 266
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 107/231 (46%), Gaps = 23/231 (9%)
Query: 46 RFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV 100
R F+Q + +R+EG + +++T+VLR+ ++ LFNG+ G ++ I + L V
Sbjct: 28 RLFTQQPLALNKEIRIEGPQAFYLTRVLRMKEGGKILLFNGQDGEWSANLEVIKKKFLVV 87
Query: 101 VALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIG 160
+ PQ + ++ F LK R D++V+K E+GA + P++T H
Sbjct: 88 KPTRQER---PQIARSDLIYCFAPLKHARLDYVVQKAVEMGASVLQPVIT--HYTQITQV 142
Query: 161 DNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFV---AIAEA 217
+ + N I +A G L E P + ++ LL ++++ F +
Sbjct: 143 NTARIEAN-----IIEAAEQCGILALPECA--PALSLEALLANWDKTRILFFCDESYGSC 195
Query: 218 TPLVTALSSSRNESSGLIIVGPEGDFTEKE-VNKIVEAGATAVGLGPHRLR 267
PL L +N G +++GPEG F+E+E + ++ LGP LR
Sbjct: 196 NPL-PLLKKHKNFRPG-VLIGPEGGFSEEERIFLKKHPFVISMSLGPRILR 244
>gi|33595836|ref|NP_883479.1| 16S ribosomal RNA methyltransferase RsmE [Bordetella parapertussis
12822]
gi|33600365|ref|NP_887925.1| 16S ribosomal RNA methyltransferase RsmE [Bordetella bronchiseptica
RB50]
gi|410474004|ref|YP_006897285.1| hypothetical protein BN117_3489 [Bordetella parapertussis Bpp5]
gi|427813600|ref|ZP_18980664.1| conserved hypothetical protein [Bordetella bronchiseptica 1289]
gi|33565915|emb|CAE36464.1| conserved hypothetical protein [Bordetella parapertussis]
gi|33567964|emb|CAE31877.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
gi|408444114|emb|CCJ50822.1| conserved hypothetical protein [Bordetella parapertussis Bpp5]
gi|410564600|emb|CCN22147.1| conserved hypothetical protein [Bordetella bronchiseptica 1289]
Length = 246
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 108/246 (43%), Gaps = 20/246 (8%)
Query: 44 IPRFFSQGGIV---RVEGDEFW--HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRF+ + RV E H +VLRL + LF+G GG ++ +
Sbjct: 3 LPRFYCDARLAPGERVALPEALAHHAVRVLRLRAGAALVLFDGAGGEYPATLEIEGKA-- 60
Query: 99 DVVALEDLKLVLPQHTQW--NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
A L +P+ + + G G + DW+VEK ELGA V+P+ Q
Sbjct: 61 ---AWAQLGAHVPREAELPGRITLVQGLPAGDKMDWVVEKAVELGAWRVSPIAA----QR 113
Query: 157 RKIGDNGFLSCN--FYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI 214
+ NG + ++ IA +A G R M ++ P + L + L +
Sbjct: 114 SVLQLNGARAEKRLAHWQRIAQAAAEQCG-RNRLMAVDAPQALAAWLAQAPGAALRLLCH 172
Query: 215 AEAT-PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
+A L AL+ ++VGPEG ++++E+ + AG AV GP LR ETA I
Sbjct: 173 PQAELDLAGALARHAAHDDICLLVGPEGGWSDEELEQARAAGVQAVRFGPRVLRTETAGI 232
Query: 274 ALLATL 279
AL+A +
Sbjct: 233 ALIAAV 238
>gi|88802426|ref|ZP_01117953.1| hypothetical protein PI23P_07550 [Polaribacter irgensii 23-P]
gi|88781284|gb|EAR12462.1| hypothetical protein PI23P_07550 [Polaribacter irgensii 23-P]
Length = 235
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 96/217 (44%), Gaps = 21/217 (9%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGL--IEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFA 120
H+ +VLR +T D +++ NGKG L +E C + ++ E+ P+ +++
Sbjct: 25 HIVRVLRKTTGDILKITNGKGYLFDVEICFANDKKCTAKIIKAEEK----PKPWNYSLHI 80
Query: 121 AFGTLKGG-RADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAF 179
A K R +W +EK TE+G +TP++ + ++ + + I A
Sbjct: 81 AIAPTKNNDRIEWFLEKATEIGIDEITPIICSN-------SERRYVKIDRFEKII--QAA 131
Query: 180 VYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSG--LIIV 237
+ + +N P+K + + Q + IA S ++S I++
Sbjct: 132 MKQSLKCTLPKINEPIKFND---FIKQDFDGTICIAHCEDQEKNFIKSVVQTSEKITILI 188
Query: 238 GPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274
GPEGDF+ E+ K ++ + LG RLR ETA I
Sbjct: 189 GPEGDFSLDEIAKALDKKFKPISLGKSRLRTETAGIV 225
>gi|452994157|emb|CCQ94323.1| Ribosomal RNA small subunit methyltransferase E [Clostridium
ultunense Esp]
Length = 252
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 104/231 (45%), Gaps = 21/231 (9%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNG--KGGLIEGCIQRIDRTGLDVVALEDL--KLVLPQHT 114
++ H+ V+R D+V + +G + L+E + + + + + LE L + LP
Sbjct: 21 EDLHHILHVMRFQVGDKVIVGDGQERAYLVE--LTSLSQKKGEGIILEPLYEERELP--- 75
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
V A G KG + DW+++K TELG ++ P + + K+ + I
Sbjct: 76 -VKVTLAQGLAKGEKMDWIIQKATELGVFAILPFTSSRTIV--KLDKTKAQERILRWQRI 132
Query: 175 ANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA-----TPLVTALSSSRN 229
A A R H + PP+ + LL + +F+ + P V + +R
Sbjct: 133 AKEA-AEQCHRTHLPQILPPVPYEKLLQMAQGYDFSFIPYEKEGSRSLFPFVERIPVNRR 191
Query: 230 ESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
L+++GPEG F+E+EV + +AG V LG LR ETA I L+ +
Sbjct: 192 ---ILVVIGPEGGFSEEEVQRAEKAGIYPVSLGKRILRTETAAIVALSVFV 239
>gi|383776346|ref|YP_005460912.1| hypothetical protein AMIS_11760 [Actinoplanes missouriensis 431]
gi|381369578|dbj|BAL86396.1| hypothetical protein AMIS_11760 [Actinoplanes missouriensis 431]
Length = 244
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 102/233 (43%), Gaps = 23/233 (9%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE-------DLKL 108
++G E H V RL + + L +G+GG + + + + +DV D +L
Sbjct: 19 LDGPEGHHAATVQRLRAGETLILADGRGGSAKAEVSAVGKGSVDVSITSRSQEPAADPRL 78
Query: 109 VLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCN 168
V+ Q G KG R + V+ TE+G + P + + GD GF + +
Sbjct: 79 VVVQ----------GIAKGDRGELAVQAMTEVGVDEIVPWAASRSVAQWR-GDRGFKARD 127
Query: 169 FYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSR 228
+ +A L + +P + +S+S AFV EAT +T +
Sbjct: 128 KWAATAREAAKQARRSWLPLVAGDPDCSTKQVASRLSESAAAFVLHEEATSRLTEVP--- 184
Query: 229 NESSG--LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
S+G +++VGPEG ++ E+ +AGA V LG LR TA +A L+ L
Sbjct: 185 LPSAGEIMLVVGPEGGISDPELQAFEDAGAVPVRLGAAVLRTSTAGVAALSVL 237
>gi|288957600|ref|YP_003447941.1| ribosomal RNA small subunit methyltransferase [Azospirillum sp.
B510]
gi|288909908|dbj|BAI71397.1| ribosomal RNA small subunit methyltransferase [Azospirillum sp.
B510]
Length = 259
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 99/232 (42%), Gaps = 14/232 (6%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
++G V ++ + + VLRL D V +FNG+ G I + + E +
Sbjct: 15 LAEGQSVGLDHERAHFLRHVLRLDRGDAVAVFNGRDGEWRAVIDGFGKGWCSLTLAEQRR 74
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
Q T +++ F LK GR D++ EK TE+G + P+ T +R D L
Sbjct: 75 ---EQDTGPDLWLVFAPLKKGRIDFVAEKATEMGVSRLCPVFTRRTDPNRVNLDR--LRA 129
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKID-GLLPLVSQSKLAFVAIAEATPLVTALSS 226
N +RL L + +D L ++ +L A A A + +
Sbjct: 130 NAVEA-------AEQCERLSVPDLADALPLDRALAAWPAERRLYLCAEAGAARPIAEVLR 182
Query: 227 SRNESSGLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLRVETATIALLA 277
++VGPEG F + E++++ + VGLGP LR +TA +A LA
Sbjct: 183 DAAAGPAALLVGPEGGFDQSELDELAKLPFVVPVGLGPRILRADTAVVAALA 234
>gi|297183994|gb|ADI20114.1| uncharacterized protein conserved in bacteria [uncultured alpha
proteobacterium EB080_L06A09]
Length = 243
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 111/237 (46%), Gaps = 29/237 (12%)
Query: 50 QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRID-RTGLDVVALEDLKL 108
+G + ++ D+ ++ V+RL+ D + +FNGK G + + + R G+ V + ++
Sbjct: 17 EGQSILLDRDQANYLFNVMRLNIGDYISVFNGKDGEWQADVLHANKRKGILVAKYQSMQQ 76
Query: 109 VLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCN 168
+ P +++ F +K R D++VEK TE+G + P+ T+ + S +I + S +
Sbjct: 77 LNPP----DLWLLFAPIKKTRTDFIVEKATEMGVSRIFPVNTD-YTNSDRIKQSRLQSHS 131
Query: 169 FYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSK-------LAFVAIAEATPLV 221
+A GG + PP +D L L S K L F + V
Sbjct: 132 I------EAAEQCGGTYV------PP--VDELSKLTSILKDWPKDRCLIFCDENKVGEAV 177
Query: 222 TALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLRVETATIALLA 277
SS + I++GPEG F++ E+ + T++ LGP LR +TA +A LA
Sbjct: 178 KTFKSSVCDKWA-ILIGPEGGFSKNEIKYLKSLEFVTSISLGPRILRADTAVVAALA 233
>gi|319765029|ref|YP_004128966.1| hypothetical protein Alide_4381 [Alicycliphilus denitrificans BC]
gi|330827224|ref|YP_004390527.1| ribosomal RNA small subunit methyltransferase E [Alicycliphilus
denitrificans K601]
gi|317119590|gb|ADV02079.1| protein of unknown function DUF558 [Alicycliphilus denitrificans
BC]
gi|329312596|gb|AEB87011.1| Ribosomal RNA small subunit methyltransferase E [Alicycliphilus
denitrificans K601]
Length = 237
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 97/226 (42%), Gaps = 22/226 (9%)
Query: 65 TKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAFGT 124
+VLRL D + LFNG+GG + R+ R+ ++V + + V G
Sbjct: 26 VQVLRLQPGDALTLFNGEGGEWTATVARMGRSDVEVEV--GAHAPVEREAARAVHLVVGM 83
Query: 125 LKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQ 184
R DWLVEK TELGA S+ P+ + K+ ++ IA +A G+
Sbjct: 84 PANERMDWLVEKATELGAASIQPIAAARSVL--KLAGERAAKRQQHWQAIAVAACEQCGR 141
Query: 185 RLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTAL---SSSRNESSG-----LII 236
V P + D L QS E LV +L + + E++G ++
Sbjct: 142 NRVPPVAAPLLLSDWL----RQSA------PEGARLVLSLRDGARALREAAGGAGAVWVL 191
Query: 237 VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLC 282
GPEG T +E + + G LG LR ETA++A LA L L
Sbjct: 192 HGPEGGLTAQEEDAALAQGFEPASLGARVLRAETASVAALAVLGLA 237
>gi|338708532|ref|YP_004662733.1| hypothetical protein Zymop_1553 [Zymomonas mobilis subsp. pomaceae
ATCC 29192]
gi|336295336|gb|AEI38443.1| protein of unknown function DUF558 [Zymomonas mobilis subsp.
pomaceae ATCC 29192]
Length = 265
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 102/234 (43%), Gaps = 25/234 (10%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PR F S I+ E + ++ V+R + LF+ + G G + DR L
Sbjct: 12 LPRLFIEERLSLNLIIIPERTQAHYLLSVMRFKMGSHLVLFDNQTGAWLGEVIEADRRKL 71
Query: 99 DVVALEDLKLVLPQHTQWN---VFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQ 155
+ K++ H + N ++ +K GR DW+ EK ELG +TP++T+
Sbjct: 72 QI------KIIRYLHDKENTPDLWLLTAPIKKGRIDWIYEKACELGVAQITPVITQ---- 121
Query: 156 SRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIA 215
R I D ++ + +A G L E + P+ + LL +L F A
Sbjct: 122 -RTIVDR--VNLERLRSHVIEAAEQCGRTALSE--VTEPLSLKDLLHNWPSERLLFFADE 176
Query: 216 E-ATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVE-AGATAVGLGPHRLR 267
E P++ A+S I++GPEG FT++E + I A V LGP LR
Sbjct: 177 EGGRPMIEAVSEIGKAHPSAILIGPEGGFTDEERSLIGNIKQAYPVSLGPRILR 230
>gi|335420467|ref|ZP_08551505.1| 16S ribosomal RNA methyltransferase RsmE [Salinisphaera shabanensis
E1L3A]
gi|334894826|gb|EGM33011.1| 16S ribosomal RNA methyltransferase RsmE [Salinisphaera shabanensis
E1L3A]
Length = 247
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 99/244 (40%), Gaps = 14/244 (5%)
Query: 41 RGGIPRFFSQGGIVRVEGDEF-----WHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDR 95
RG IPR F + + E H+ VLRL + V LFNG G I + DR
Sbjct: 4 RGHIPRVFVDSALYVDQTLELAEAKRHHLATVLRLGVDAPVTLFNGDGHEYGARIVQADR 63
Query: 96 TGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQ 155
+ + + + + + ++ +G R D+ + K ELG ++ P+ TE
Sbjct: 64 KRMTLAV--ETRHSPERESSLSITLYQAIARGDRMDFALAKAVELGVSAIRPVFTER--G 119
Query: 156 SRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIA 215
K+ ++ + SA G+ ++ P + L S + +
Sbjct: 120 KVKLEGERLTKKQAHWQAVVESAAEQSGR-----LVCPALHTAARLSTCLDSDRDHLRLM 174
Query: 216 EATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIAL 275
A L+S+ +++GPE +E E++ AG + LGP LR ETA +A
Sbjct: 175 LAPTAPAGLASTTPHKHVALLIGPESGLSEPEIDTAATAGWQPITLGPRILRTETAGMAA 234
Query: 276 LATL 279
LA L
Sbjct: 235 LAAL 238
>gi|386857069|ref|YP_006261246.1| hypothetical protein DGo_CA1861 [Deinococcus gobiensis I-0]
gi|380000598|gb|AFD25788.1| hypothetical protein DGo_CA1861 [Deinococcus gobiensis I-0]
Length = 237
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 104/228 (45%), Gaps = 22/228 (9%)
Query: 60 EFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDR----TGLDVVALEDLKLV-LPQHT 114
E H+ +V+RL DRV+ F+G+GG I ++ LD+ A D L + T
Sbjct: 21 EVRHL-QVMRLRPGDRVQAFDGQGGEAPAEIAELEEGRAVLTLDLTAGPDAGAADLGRET 79
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
V A LKG + +V TELG V LL H +R+IG + +
Sbjct: 80 PQPVTLAIALLKGDKLADVVRAATELGVARVQ-LLVTAHADAREIGAQKLVRLRR----V 134
Query: 175 ANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTA-LSSSRNESSG 233
A A +R+ VL P LPL + + +A P A L + ++
Sbjct: 135 AEEAARQSRRRVVPEVLGP-------LPLARLTWEGRLVVAH--PGAEARLPDLLDWAAP 185
Query: 234 LIIV-GPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
L ++ GPEG F++ E+ ++ GA V LGP LR ETA +A+L ++
Sbjct: 186 LTVLSGPEGGFSDTEIAGLLARGAVPVTLGPRILRAETAPLAMLGAVV 233
>gi|385324869|ref|YP_005879308.1| hypothetical protein NMV_2116 [Neisseria meningitidis 8013]
gi|261393256|emb|CAX50882.1| conserved hypothetical protein [Neisseria meningitidis 8013]
Length = 241
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 112/247 (45%), Gaps = 24/247 (9%)
Query: 41 RGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV 100
R +P S G V + + H+ VLR+ N+ + LF+GKG + +++ +
Sbjct: 3 RFHLPENLSVGQTVALPENIVRHLN-VLRVRPNENITLFDGKGKAHAAQLTVLEKRRAEA 61
Query: 101 VAL-EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
L ED + N+ G R D+ ++K ELG ++ P+++E + R
Sbjct: 62 EILHED---TTDNESPLNITLIQSISSGDRMDFTLQKSVELGITAIQPVISERCI-VRLD 117
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
G+ + + ++ G + PP +LP++ + +E+T
Sbjct: 118 GERAAKRLARWQEIVISACEQSGRNTV------PP-----VLPIIGYREALDKMPSESTK 166
Query: 220 LVTALSSSRN-----ESSGLII--VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
L+ +++ +R SG I+ VGPEG +TE+E + EAG AV LG LR ETA
Sbjct: 167 LIMSINRARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGFQAVTLGKRILRTETAP 226
Query: 273 IALLATL 279
+A LA +
Sbjct: 227 LAALAAM 233
>gi|308272138|emb|CBX28745.1| hypothetical protein N47_L13430 [uncultured Desulfobacterium sp.]
Length = 259
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 98/223 (43%), Gaps = 9/223 (4%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQ 115
++G + H+ VLRL D +ELF+ G + I + ++V + + +
Sbjct: 18 IKGSDARHIINVLRLKPGDHIELFDESGIKYKARIVAVSSARVEVSVVGQSNQTVESFLE 77
Query: 116 WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
V +F LK + D L+ + TELG P ++E + + D L+ + + IA
Sbjct: 78 IIVAQSF--LKEAKMDNLIRQLTELGITKWIPFISERSVS--RPDDKRLLNRSKRWESIA 133
Query: 176 NSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVT----ALSSSRNES 231
A +R ++ + LL + L + L+ + ++ +
Sbjct: 134 KEA-AKQCKRAKTTIIEKTVSFKELLESKQEFDLKIIFWENEKNLLDIKNLTATHQKDIN 192
Query: 232 SGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274
LII+GPEG FT E+ K E+G GLGP LR ETA+++
Sbjct: 193 KILIILGPEGGFTISEIEKAKESGFLTAGLGPRILRAETASVS 235
>gi|254464533|ref|ZP_05077944.1| conserved hypothetical protein TIGR00046 [Rhodobacterales bacterium
Y4I]
gi|206685441|gb|EDZ45923.1| conserved hypothetical protein TIGR00046 [Rhodobacterales bacterium
Y4I]
Length = 221
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 101/224 (45%), Gaps = 16/224 (7%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK-LVLPQHT 114
++ D+ ++ V+RL+ V LFNGK G + + G +V E K L LP
Sbjct: 1 MDRDQAHYLFGVMRLAAGAAVALFNGKDGEWLAEVAEAGKRGGTLVCQEQTKPLQLPP-- 58
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
+++ F +K R D++VEK E+GA + P+ TE R D
Sbjct: 59 --DLWLLFAPIKKARTDFIVEKAAEMGAARILPVQTEFTNSERIRQDR-------LQAHA 109
Query: 175 ANSAFVYGGQRLHEMVLNPPMKIDGLLP-LVSQSKLAFVAIAEATPLVTALSSSRNESSG 233
+A GG + E+ + K+ LL + +L F AE + + ++ +
Sbjct: 110 VEAAEQCGGTYVPEVADS--QKLSRLLDQWPRERQLMFCDEAEVGNALQLAAETQKDVPW 167
Query: 234 LIIVGPEGDFTEKEVNKI-VEAGATAVGLGPHRLRVETATIALL 276
I++GPEG F+E E ++ + V LGP LR +TA +A +
Sbjct: 168 AILIGPEGGFSEAERKRLHALPQSHVVSLGPRILRADTAAVAAM 211
>gi|159901854|gb|ABX10589.1| hypothetical protein 5H12_27 [uncultured planctomycete 5H12]
Length = 239
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 100/223 (44%), Gaps = 18/223 (8%)
Query: 53 IVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQ 112
I ++ G+ H+ V+R+ T D V LF+G G I D+ + + +++ Q
Sbjct: 14 ICQISGESAHHIVNVMRMKTGDSVILFDGTNREFTGIITETDKKVVTIAIQSVIEVSREQ 73
Query: 113 HTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNF 169
+ AF KG R +++EK ELG S+ PL T+ +++Q R S
Sbjct: 74 KITSTLAVAFP--KGDRQKFMIEKLVELGVDSLVPLQTQRSVVNVQPR--------SLEK 123
Query: 170 YYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRN 229
+I ++ G +L M + P + + + + FVA L + +
Sbjct: 124 IQRWIVEASKQCGRNQL--MQIKPTVSFNDWIHGQREGP-RFVAHPHDMRLTITDAIGQA 180
Query: 230 ESSGLI--IVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
+ +G++ VGPEG FT +E+ AG + + LG LR+ET
Sbjct: 181 QRAGVVSLTVGPEGGFTSQEIADAQNAGWSTIALGITILRIET 223
>gi|269123850|ref|YP_003306427.1| hypothetical protein Smon_1088 [Streptobacillus moniliformis DSM
12112]
gi|268315176|gb|ACZ01550.1| protein of unknown function DUF558 [Streptobacillus moniliformis
DSM 12112]
Length = 233
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 107/239 (44%), Gaps = 29/239 (12%)
Query: 51 GGIVRV-EGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLV 109
G IV + E E H+ V RL ND V + + + +G ++ I++ + ++++ D K
Sbjct: 11 GDIVEILEVTEINHIKNVFRLKENDEVRVIDFEYEY-KGIVKEINKKNI-LISISDKKED 68
Query: 110 LPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRK-----IGD 161
+N+ A G LK + L++K TELG +++ PL TE + + +K +
Sbjct: 69 -NYSLSFNLDVAIGLLKNEKMKLLIQKLTELGIRNIIPLKTERVVVKINEKKEKWDLVVR 127
Query: 162 NGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLV 221
C ++ + +LN +I + K+ + + L
Sbjct: 128 ESMKQCR-------------AIKKTNVEILNEIKRI----KYENYDKIIYAYENSESSLN 170
Query: 222 TALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
+ +S+ L+I+GPEG FT+ EV + GA + LG LR ETA I L +++
Sbjct: 171 LKEIIKKEDSNILLIIGPEGGFTKDEVKYLKSIGAIEISLGKRILRAETAAIVLAGSII 229
>gi|262039461|ref|ZP_06012765.1| YqeU [Leptotrichia goodfellowii F0264]
gi|261746528|gb|EEY34063.1| YqeU [Leptotrichia goodfellowii F0264]
Length = 235
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 77/164 (46%), Gaps = 19/164 (11%)
Query: 117 NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNFYYGF 173
N+ AA G LK + + ++K TE+G + PL TE + + +K +
Sbjct: 77 NIDAAIGILKNEKMNMTIKKLTEIGVSKIIPLQTERVVVKINEKK----------EKWDI 126
Query: 174 IANSAFVY-GGQRLHEMVLNPPMKIDGL-LPLVSQSKLAFVAIAEATPLVTALSSSRNES 231
A G + E+V P K+ + L + A+ PLV ++ +N+
Sbjct: 127 TVREALKQCKGVKFTEIV--PVTKLQSINYELYDKIVYAYENSDNTEPLVNIVN--KNDK 182
Query: 232 SGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIAL 275
+ L IVGPEG TE+EVN + E GAT + LG LR ETA I +
Sbjct: 183 NILYIVGPEGGITEEEVNFLKEKGATEISLGKRILRAETAAIVI 226
>gi|193211908|ref|YP_001997861.1| 16S ribosomal RNA methyltransferase RsmE [Chlorobaculum parvum NCIB
8327]
gi|193085385|gb|ACF10661.1| protein of unknown function DUF558 [Chlorobaculum parvum NCIB 8327]
Length = 247
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 102/232 (43%), Gaps = 21/232 (9%)
Query: 52 GIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLP 111
G + G+EF H+ +VLR D V + +G G E ++ I ++ L ++ + + V P
Sbjct: 16 GRASIGGEEFHHLARVLRCREGDTVPVTDGAGLSAELVVESIGKSELQG-SIRNPRRVPP 74
Query: 112 QHTQWNVFAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHLQS---RKIGDNGFLSC 167
T+ +V A LK R D+ +EK TELG + P++T+ + + +KI
Sbjct: 75 PETRVSV--AMSLLKAPQRFDFFLEKATELGIDRIIPIITQRTVSTPDLKKIDRKAERWR 132
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDG--LLPLVSQSKLAFVAIAEATPLVTALS 225
N + S Y + ++++G L + +S+ AF A V
Sbjct: 133 NIVHSAARQSRRYYLPELSTPCSFQEALQLEGYDLRLIAHESEEAFGPFEPAGQCV---- 188
Query: 226 SSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
L +GPEG F+E E+ ++G V G LR ETA + +A
Sbjct: 189 --------LFFIGPEGGFSEAEIAAAAQSGVRPVSFGASVLRAETAGVFAVA 232
>gi|398819521|ref|ZP_10578073.1| RNA methyltransferase, RsmE family [Bradyrhizobium sp. YR681]
gi|398229821|gb|EJN15891.1| RNA methyltransferase, RsmE family [Bradyrhizobium sp. YR681]
Length = 252
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 109/243 (44%), Gaps = 23/243 (9%)
Query: 45 PRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PR F +Q V ++ D+ ++ VLRL+ V FNG+ G + I+ R
Sbjct: 9 PRLFVDAPLAQDARVPLDRDQSNYLGNVLRLAAGAEVLAFNGRDGEWQAAIEGRKRPDGL 68
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
V+ L+ + PQ ++ F LK R D++V+K E+GA ++ P+LT SR
Sbjct: 69 VI----LQQIRPQDRLADLTYVFAPLKHARLDYMVQKAIEMGAAALQPVLTRFTQASR-- 122
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVA--IAEA 217
++ + +A G L + P+ +D L +L AE
Sbjct: 123 -----VNTERMRANVVEAAEQCG--ILSIATVAEPVALDRYLGQRPADRLLIFCDEAAEV 175
Query: 218 TPLVTALSSSRNES-SGL-IIVGPEGDFTEKEVNKIV-EAGATAVGLGPHRLRVETATIA 274
V +L +R G+ +++GPEG F E+E ++ + + LGP +R +TA +A
Sbjct: 176 QDPVQSLQDARETGHDGIDVLIGPEGGFAEEERALLLRQPKILRLALGPRIMRADTAGVA 235
Query: 275 LLA 277
LA
Sbjct: 236 ALA 238
>gi|431794905|ref|YP_007221810.1| RsmE family RNA methyltransferase [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430785131|gb|AGA70414.1| RNA methyltransferase, RsmE family [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 245
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 105/236 (44%), Gaps = 23/236 (9%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQ 115
++G E H+ +VLRLS D + F+ G + + + + LE + TQ
Sbjct: 16 LQGPERDHLVRVLRLSPGDEIIGFDNSGAEYKAVVNTVGDHSVTCGILEQDYPEVEARTQ 75
Query: 116 WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNFYYG 172
V+ G KG + +W+++K TELG + PL T+ + L+ K D +
Sbjct: 76 --VYLVTGLSKGEKMEWVIQKGTELGMAGLIPLRTKRAVMKLEGNKAKDR----VERWQK 129
Query: 173 FIANSAFVYGGQRLHEMVLNPP---MKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRN 229
+A R+ E + P ++ LLP +Q + + T L + L
Sbjct: 130 ICGEAA--KQSHRVRESKVYPVADWKELKDLLPPTTQWIIPYENEKSMT-LRSVLKEFNP 186
Query: 230 ESSGLIIVGPEGDFTEKEV----NKIVEAGATAVGLGPHRLRVETATIALLATLML 281
+ I++GPEG F E EV N + A +V LGP LR ETA IA L TL+L
Sbjct: 187 QEPIAILIGPEGGFEESEVLLAQNTL---QAQSVSLGPRILRAETAAIATL-TLVL 238
>gi|307243293|ref|ZP_07525460.1| RNA methyltransferase, RsmE family [Peptostreptococcus stomatis DSM
17678]
gi|306493311|gb|EFM65297.1| RNA methyltransferase, RsmE family [Peptostreptococcus stomatis DSM
17678]
Length = 258
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 113/253 (44%), Gaps = 20/253 (7%)
Query: 44 IPRFFSQGG-------IVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRT 96
+ RFF + G + +EG++ H++KVLR D +E+ + I+ ID+T
Sbjct: 1 MDRFFVEPGQLNLGDKTLYIEGEDVKHISKVLRYDQGDEIEVCDSNKHEYLCRIESIDKT 60
Query: 97 GLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
+++ +E++ + + +++ G K + + +++K TE G + + T + +
Sbjct: 61 RINLSIVEEIDINRESRVRVSLYQ--GLPKSTKMEIILQKLTEAGVDEIVLVNTRRSVVN 118
Query: 157 RKIGDNGFLSCNFYYGFIANSAF---------VYGGQRLHEMVLNPPMKIDGLLPLVSQS 207
K GD + + I +A + G E + + + P +
Sbjct: 119 IK-GDKADKKFDRWERIIYEAAKQCKRGLIPKLRGILSFEEALEDMGKNDINICPYEDEK 177
Query: 208 KLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLR 267
L + A T LV + ++E I +GPEG FT++E + + EAG +V +GP R
Sbjct: 178 SLG-IKEALQTDLVKNIIDKKDEVRVGIFIGPEGGFTQEENDMVKEAGIASVTMGPRIFR 236
Query: 268 VETATIALLATLM 280
ETA+I A +
Sbjct: 237 TETASIVATAITL 249
>gi|303237747|ref|ZP_07324307.1| RNA methyltransferase, RsmE family [Prevotella disiens FB035-09AN]
gi|302482199|gb|EFL45234.1| RNA methyltransferase, RsmE family [Prevotella disiens FB035-09AN]
Length = 239
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 106/235 (45%), Gaps = 21/235 (8%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWN- 117
+E H +VLRL + D + L +G+G + + + L ++K +PQ WN
Sbjct: 21 EEATHAVRVLRLKSGDEIYLMDGEGTFFQAEVTLASQKH----CLYNIKKAIPQEKTWNS 76
Query: 118 -VFAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
+ A K GR +WLVEK TE+G E+ + K + L + +
Sbjct: 77 KIHLAIAPTKDIGRIEWLVEKVTEVG-------FDEISFLNCKFSERKSLRSDRIERIVV 129
Query: 176 NSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSG-- 233
++ + ++ + ++N + D + + + +S +++
Sbjct: 130 SA--MKQSRKPWKPIVNELINFDDFINKDFKGAKYICHCYNEIEKIDFFNSINLQTTENI 187
Query: 234 LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSDSQQM 288
+++GPEGDF+ +EV K + G +V LG RLR ETA LA +M+ + S+++
Sbjct: 188 TVLIGPEGDFSIEEVRKALANGYQSVTLGNSRLRTETAG---LAAVMMANLSRRI 239
>gi|296284223|ref|ZP_06862221.1| 16S ribosomal RNA methyltransferase RsmE [Citromicrobium
bathyomarinum JL354]
Length = 255
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 110/242 (45%), Gaps = 19/242 (7%)
Query: 45 PRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PR F +G + + G+ ++ KV+R+S D V L + G + ++D+ +D
Sbjct: 13 PRLFVEDELGEGRTIALYGNRAHYLGKVMRVSEGDTVILCDDLTGEWAARVGQVDKRRVD 72
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
V +E L+ + +++ LK R D ++EK TELG ++ P++T R +
Sbjct: 73 VTVVERLR---EREAVPDLWLCPALLKKDRFDLVLEKATELGVAAIRPVVTR-----RCV 124
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
D L+ + +A L ++ P+K+D LL + F A E
Sbjct: 125 ADK--LNPERAATIVTEAAEQCARTALPQVA--GPVKLDALLADWPAERALFFADEEGGE 180
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVE-AGATAVGLGPHRLRVETATIALLAT 278
A + +R+ + I+ GPEG F + E I A + LGP LR ETATIA ++
Sbjct: 181 -DAASAFARHGAPAAILTGPEGGFDDAERAAIRALPQAIPITLGPRILRGETATIAAISI 239
Query: 279 LM 280
M
Sbjct: 240 WM 241
>gi|386814234|ref|ZP_10101458.1| conserved hypothetical protein [planctomycete KSU-1]
gi|386403731|dbj|GAB64339.1| conserved hypothetical protein [planctomycete KSU-1]
Length = 243
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 105/247 (42%), Gaps = 13/247 (5%)
Query: 38 NQSRGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTG 97
+Q R IP + I ++G E H+ V R ++ LF+G+G I I
Sbjct: 2 HQDRFYIPNAPATNEI-WLDGREAHHILHVKRAKLGAKITLFDGEGFEYLARITEIFHDT 60
Query: 98 LDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
L V + + + ++ AF KG A +L++KC ELG +++ P+ E +
Sbjct: 61 LKVCI--ERSNAVDREAPVDITIAFSIPKGKLATFLIQKCAELGVKTLIPIHCERSVVD- 117
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA 217
I D + + ++ +R + M +D L+ L+ +A E
Sbjct: 118 -IRDRSEAKIEKWDKIVIEAS--KQCKRNSITKIKDVMPLDSLIKTAGNYDLSLIACTET 174
Query: 218 TPLVTALSSSRNESSGL----IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
L S NE L ++GPEG FT E+ +AG + +G LR+ETA I
Sbjct: 175 H--TKTLKSVLNEYPSLKRIICLIGPEGGFTYTEIEMAKKAGFVPISIGLSTLRIETAAI 232
Query: 274 ALLATLM 280
A+ + L+
Sbjct: 233 AITSMLL 239
>gi|167040699|ref|YP_001663684.1| 16S ribosomal RNA methyltransferase RsmE [Thermoanaerobacter sp.
X514]
gi|300914740|ref|ZP_07132056.1| protein of unknown function DUF558 [Thermoanaerobacter sp. X561]
gi|307724026|ref|YP_003903777.1| hypothetical protein Thet_0859 [Thermoanaerobacter sp. X513]
gi|166854939|gb|ABY93348.1| protein of unknown function DUF558 [Thermoanaerobacter sp. X514]
gi|300889675|gb|EFK84821.1| protein of unknown function DUF558 [Thermoanaerobacter sp. X561]
gi|307581087|gb|ADN54486.1| protein of unknown function DUF558 [Thermoanaerobacter sp. X513]
Length = 245
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 102/235 (43%), Gaps = 24/235 (10%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQ 115
+EG + H+ VLRL D + + +G +T + V + L L Q
Sbjct: 18 IEGKDTHHIINVLRLKKGDEIVISDGSTEY---------QTSIYGVEKNRVILFLESKLQ 68
Query: 116 WNVFAAF------GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNF 169
N ++ G K + + +++KCTE+G + P++T + K N L+
Sbjct: 69 SNTESSIEIALFQGLPKSDKMELIIQKCTEIGVKKFIPIITRYSVVDIK---NSNLNKKI 125
Query: 170 -YYGFIANSAFVYGGQ-RLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT--PLVTALS 225
+ I+ A G+ L E+ + P+ + L + + L + + L L
Sbjct: 126 ERWNKISREACKQSGRTSLPEICM--PISFEEALKQIEEFDLCIIPYEKEKTLKLKEVLD 183
Query: 226 SSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
+N I VGPEG F+E+EV+ + A V LGP LR ETA I++ + +M
Sbjct: 184 GVKNIKKVAIFVGPEGGFSEEEVDLALRYSAKLVSLGPRILRTETAAISVCSIVM 238
>gi|163758378|ref|ZP_02165466.1| hypothetical protein HPDFL43_02095 [Hoeflea phototrophica DFL-43]
gi|162284667|gb|EDQ34950.1| hypothetical protein HPDFL43_02095 [Hoeflea phototrophica DFL-43]
Length = 250
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 102/207 (49%), Gaps = 14/207 (6%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ VLR++ + +V +FNG+ G ++ + + ++ +E + PQ + F
Sbjct: 37 YLLTVLRMAEDQQVLVFNGRDGEFLSALKPLSKKAAELEIVEQTR---PQPPLPRLDFLF 93
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
LK GR ++LV+K TE+G + +TP T+ H Q K+ + L N I +A G
Sbjct: 94 APLKVGRLEYLVQKATEMGVRQITPAFTD-HTQLHKV-NAARLEAN-----ILEAAEQCG 146
Query: 183 GQRLHEMVLNPPMKIDGLLP-LVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEG 241
+ + L K+D LL ++ F ++A T + S+ E ++VGPEG
Sbjct: 147 NLAIPQ--LQEAQKLDALLDGWDPARRIIFCNESQAGNNPTDILSAVEERDLALLVGPEG 204
Query: 242 DFTEKEVNKIVEAG-ATAVGLGPHRLR 267
F+++E +++ TA+ LGP LR
Sbjct: 205 GFSDRERERLLALPFLTAIPLGPRILR 231
>gi|240013291|ref|ZP_04720204.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae DGI18]
gi|240120363|ref|ZP_04733325.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae PID24-1]
Length = 241
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 114/249 (45%), Gaps = 29/249 (11%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRF+ S G V + + H+ VLR+ N+ + LF+GKG + +++
Sbjct: 1 MPRFYLPENLSVGQTVDLPDNIVRHL-NVLRVRPNENITLFDGKGKAHTARLTVLEKHRA 59
Query: 99 DVVAL-EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
+ L ED + N+ G R D+ ++K ELG ++ P+++E + R
Sbjct: 60 EAEILHED---TTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCI-VR 115
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA 217
G+ + + ++ G + PP +LP++ + +E+
Sbjct: 116 LDGERAAKRLARWQEIVISACEQSGRNTV------PP-----VLPIIGYREALDKMPSES 164
Query: 218 TPLVTALSSSRN-----ESSGLII--VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
T L+ +++ +R SG I+ VGPEG +TE+E + EAG AV LG LR ET
Sbjct: 165 TRLIMSINRARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGFQAVTLGKRILRTET 224
Query: 271 ATIALLATL 279
A +A +A +
Sbjct: 225 APLAAIAAM 233
>gi|408378481|ref|ZP_11176078.1| 16S ribosomal RNA methyltransferase RsmE [Agrobacterium
albertimagni AOL15]
gi|407747618|gb|EKF59137.1| 16S ribosomal RNA methyltransferase RsmE [Agrobacterium
albertimagni AOL15]
Length = 245
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 94/211 (44%), Gaps = 12/211 (5%)
Query: 58 GDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWN 117
++F ++ VLR + +FNG+ G + I R + + +E + PQ +
Sbjct: 26 AEQFNYLANVLRFEEGAELLVFNGRHGEWKASIHFPTRKKIMITPVEQTR---PQPDDCD 82
Query: 118 VFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANS 177
+ F LK GR D+LV+K E+GA + P++T+ H+Q KIG+ L N A
Sbjct: 83 LHFLFAPLKVGRMDYLVQKAVEMGAGILQPVMTQ-HVQG-KIGNIDRLQAN------AVE 134
Query: 178 AFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIV 237
A G V+ P D L S ++ + AT S E S ++V
Sbjct: 135 AAEQCGILAIPKVVEPVKLRDLLDRWPSDRRIIYCDEDSATQNPLPALSRIEEKSLALLV 194
Query: 238 GPEGDFTEKEVNKIVEAG-ATAVGLGPHRLR 267
GPEG F+E E + TA+ LGP LR
Sbjct: 195 GPEGGFSEDERALLRSLPFVTAIPLGPRILR 225
>gi|296170596|ref|ZP_06852179.1| RsmE family RNA methyltransferase, partial [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295894760|gb|EFG74486.1| RsmE family RNA methyltransferase [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length = 240
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 100/235 (42%), Gaps = 15/235 (6%)
Query: 51 GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVL 110
G + V+GDE +H V R+ +R+ L +G GGL ++ R GL LE V
Sbjct: 15 GALAAVDGDEGFHAATVRRIRPGERLVLGDGAGGLARCEVEHAGRDGLRARVLERWT-VA 73
Query: 111 PQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSC 167
P V A K R++ VE TE GA + + Q ++ D G
Sbjct: 74 PARPPVTVVQAL--PKSERSELAVELATEAGADAFLAWQSARCVASWQGPRV-DKGL--- 127
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLN---PPMKIDGLLPLVSQSKLAFVAIAEATPLVTAL 224
+ +A SA +R H ++ ++ G + S + +A+ E+ A
Sbjct: 128 -RRWRAVARSA-ARQSRRAHIPAVDGVLSTAELTGRVRAASAAGSVVLALHESASDRLAD 185
Query: 225 SSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
S S ++VGPEG +E+ + +AGA AVGLGP LR TA L L
Sbjct: 186 SHVAQADSVWLVVGPEGGIAPEEIAALTDAGAVAVGLGPQVLRTSTAAAVALGAL 240
>gi|300703042|ref|YP_003744644.1| ribosomal RNA small subunit methyltransferase e (rsme) [Ralstonia
solanacearum CFBP2957]
gi|299070705|emb|CBJ42000.1| putative ribosomal RNA small subunit methyltransferase E (rsmE)
[Ralstonia solanacearum CFBP2957]
Length = 249
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 109/253 (43%), Gaps = 28/253 (11%)
Query: 43 GIPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTG 97
G+PRF+ + V + H+ VLRL+ D V+LF+G G R
Sbjct: 2 GLPRFYIDSLLAPHTTVTLPESVARHI-HVLRLAVGDDVQLFDGSGLEF--------RAR 52
Query: 98 LDVVALEDLKLVLPQHTQWNVFAAF------GTLKGGRADWLVEKCTELGAQSVTPLLTE 151
LD + D+ L TQ + A + G G + DWL+EK ELG ++ PL TE
Sbjct: 53 LDAINRRDVTASLADATQPDTEARYAITLAQGIAGGDKMDWLIEKAVELGVHAIAPLQTE 112
Query: 152 LHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAF 211
+ R G+ + + + G R+ ++P + L + S A
Sbjct: 113 RSV-VRLSGERAAKRVQHWQALVQAACEQCGRARVP--AVSPVTTLRDWLTVAKASDRAR 169
Query: 212 VAI----AEATPLVTALSSSRNESSGL-IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRL 266
V + +++ A S R +S+G+ +++GPEG + E + AG + LG L
Sbjct: 170 VMLSPRGSQSLTQWAAQSRERIDSAGIELLIGPEGGLSPDEESLAEAAGYLPLTLGRRIL 229
Query: 267 RVETATIALLATL 279
R E+A + ++ L
Sbjct: 230 RTESAALVAVSAL 242
>gi|374710165|ref|ZP_09714599.1| RNA methyltransferase RsmE [Sporolactobacillus inulinus CASD]
Length = 255
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 96/234 (41%), Gaps = 15/234 (6%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQH 113
V + GD+ H+ KV+R+ D + N KG + I+ V AL + +
Sbjct: 16 VTITGDDAHHIQKVMRMKPADLILCANNKGAVYLCAIESFAEGS--VHALIKSRQCVDSE 73
Query: 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE--LHLQSRKIGDNGFLSCNFYY 171
+V A G KG + + +++K TE GA+ P + + L + D L
Sbjct: 74 LPIHVTIAQGIPKGDKFETIIQKGTECGARCFVPFQADRCVALWKKNKADKKRLRLEK-- 131
Query: 172 GFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP------LVTALS 225
I+ A +R + + PM +D L+ + VA E T L
Sbjct: 132 --ISKEAAEQSHRRFIPEI-SEPMNLDQLIAFSASFPFKVVAFEETAKAGQQARFPTVLK 188
Query: 226 SSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
S L +VGPEG T +E + + G GLGP LR ETA + LL+ +
Sbjct: 189 EMTAGDSLLAVVGPEGGLTAEEADTLKNHGFVLCGLGPRILRTETAALYLLSAI 242
>gi|421550952|ref|ZP_15996953.1| 16S rRNA methyltransferase RsmE [Neisseria meningitidis 69166]
gi|433472111|ref|ZP_20429489.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
68094]
gi|433478473|ref|ZP_20435781.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
70012]
gi|433526842|ref|ZP_20483464.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
69096]
gi|433539656|ref|ZP_20496123.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
70030]
gi|402329489|gb|EJU64850.1| 16S rRNA methyltransferase RsmE [Neisseria meningitidis 69166]
gi|432206737|gb|ELK62738.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
68094]
gi|432213131|gb|ELK69057.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
70012]
gi|432258895|gb|ELL14175.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
69096]
gi|432271676|gb|ELL26799.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
70030]
Length = 241
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 112/247 (45%), Gaps = 24/247 (9%)
Query: 41 RGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV 100
R +P S G V + + H+ VLR+ N+ + LF+GKG + +++ +
Sbjct: 3 RFHLPENLSVGQTVALPDNIVRHLN-VLRVRPNENITLFDGKGKAHAARLSFLEKRRAEA 61
Query: 101 VAL-EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
L ED + N+ G R D+ ++K ELG ++ P+++E + R
Sbjct: 62 EILHED---TTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCI-VRLD 117
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
G+ + + ++ G + PP +LP++ + +E+T
Sbjct: 118 GERAAKRLARWQEIVISACEQSGRNTV------PP-----VLPIIGYREALDKMPSESTK 166
Query: 220 LVTALSSSRN-----ESSGLII--VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
L+ +++ +R SG I+ VGPEG +TE+E + EAG AV LG LR ETA
Sbjct: 167 LIMSINRARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGFQAVTLGKRILRTETAP 226
Query: 273 IALLATL 279
+A +A +
Sbjct: 227 LAAIAAM 233
>gi|399041903|ref|ZP_10736832.1| RNA methyltransferase, RsmE family [Rhizobium sp. CF122]
gi|398059766|gb|EJL51610.1| RNA methyltransferase, RsmE family [Rhizobium sp. CF122]
Length = 245
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 103/221 (46%), Gaps = 12/221 (5%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
+ G V D F ++ VLR++ + +FNG+ G + + R + ++A E +
Sbjct: 16 LAAGTTVETTADHFNYLANVLRMAEGVELLVFNGRDGEWKARLTFPTRKRIVLIAEEQTR 75
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
PQ ++ F LK GR D+LV+K E+GA + P++T+ H+Q KI + L
Sbjct: 76 ---PQPVPSDLHYLFAPLKVGRLDYLVQKAVEMGAGVLRPVMTQ-HVQG-KITNLDKLKA 130
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSS 227
N + +A G + + V P D L S ++ + +A L S
Sbjct: 131 N-----VIEAAEQCGILDIPD-VAEPVKLFDLLDTWPSDRRIIYCDEGDAGQNPLPLLSK 184
Query: 228 RNESSGLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLR 267
+E ++VGPEG F+E+E ++ TA+ LGP LR
Sbjct: 185 ISERKLALLVGPEGGFSEEERARLRSFDFITAIPLGPRILR 225
>gi|304313284|ref|YP_003812882.1| hypothetical protein HDN1F_36770 [gamma proteobacterium HdN1]
gi|301799017|emb|CBL47260.1| Protein of unknown function (DUF558) [gamma proteobacterium HdN1]
Length = 248
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 108/250 (43%), Gaps = 31/250 (12%)
Query: 44 IPRFFSQ-----GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
IPR F + G V + H+T+VLR+ D+V LFNG GG G I+ + G+
Sbjct: 3 IPRIFQEIPLLEGTKVTLTESGSHHVTQVLRMKPGDQVLLFNGTGGEYFGEIEATGKRGV 62
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLT---ELHLQ 155
+V+ ++ ++ G KG R D+ ++K ELG +TPL + E+ L
Sbjct: 63 EVLLTYFNEVDRASPLSVHLGQVIG--KGERFDYAIQKAVELGVTEITPLFSRRCEVKLN 120
Query: 156 SRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIA 215
++ D + +A +A G + + P V+ ++ A A
Sbjct: 121 GPRL-DKKLQQ----WKHLAVAACEQSGLNIIPQIHAP----------VALAEWAETVQA 165
Query: 216 EATPLVTALSSSRN------ESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVE 269
+A ++ N S VGPEG F + EV+ + E G V +GP R E
Sbjct: 166 DARWILHTEGEPHNPFTQQAPQSLAFAVGPEGGFEDTEVSSVRERGFDCVSMGPRIWRTE 225
Query: 270 TATIALLATL 279
TA + +L+ L
Sbjct: 226 TAPVVMLSLL 235
>gi|412339387|ref|YP_006968142.1| hypothetical protein BN112_2080 [Bordetella bronchiseptica 253]
gi|408769221|emb|CCJ53997.1| conserved hypothetical protein [Bordetella bronchiseptica 253]
Length = 246
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 107/246 (43%), Gaps = 20/246 (8%)
Query: 44 IPRFFSQGGIV---RVEGDEFW--HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRF+ + RV E H +VLRL + LF+G GG ++ +
Sbjct: 3 LPRFYCDARLAPGERVALPEALAHHAVRVLRLRAGAALVLFDGAGGEYPATLEIEGKA-- 60
Query: 99 DVVALEDLKLVLPQHTQW--NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
A L +P+ + + G G + DW+VEK ELGA V+P+ Q
Sbjct: 61 ---AWAQLGAHVPREAELPGRITLVQGLPAGDKMDWVVEKAVELGAWRVSPIAA----QR 113
Query: 157 RKIGDNGFLSCN--FYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI 214
+ NG + ++ +A +A G R M ++ P + L + L +
Sbjct: 114 SVLQLNGARAEKRLAHWQRVAQAAAEQCG-RNRLMAVDAPQALAAWLAQAPGAALRLLCH 172
Query: 215 AEAT-PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
EA L AL+ ++VGPEG +++ E+ + AG AV GP LR ETA I
Sbjct: 173 PEAELDLAGALTRHAAHDEICLLVGPEGGWSDDELAQARAAGVQAVRFGPRVLRTETAGI 232
Query: 274 ALLATL 279
AL+A +
Sbjct: 233 ALIAAV 238
>gi|334128474|ref|ZP_08502362.1| RsmE family RNA methyltransferase [Centipeda periodontii DSM 2778]
gi|333387151|gb|EGK58354.1| RsmE family RNA methyltransferase [Centipeda periodontii DSM 2778]
Length = 248
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 107/246 (43%), Gaps = 21/246 (8%)
Query: 44 IPRFFSQGGI---VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV 100
+ R F G + + + G + H+ V+R D + + + G I IDR D
Sbjct: 1 MRRLFYAGVLAEEIEITGGDAHHLAHVMRAQAGDEIVVADVDGRAARMTITAIDR---DA 57
Query: 101 VALEDLKLVLPQH-TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
V L ++ V + T+ V LKG + D++V+K ELGA ++ PL TE H+ R
Sbjct: 58 VHLRLVEYVASEERTRTEVILVQALLKGEKMDFVVQKAVELGASALYPLKTE-HVVVR-Y 115
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKL--------AF 211
+ + IA+ A G+R L ++ L L+ ++L F
Sbjct: 116 DAKKAAAKAARWQKIADEAAKQCGRR----ALMRVAEVTALSALLQNAELFDTPDTAVIF 171
Query: 212 VAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA 271
+E T A+ S ++IVG EG F+ E I AGA +V LG LR ETA
Sbjct: 172 CYESEGTQSARAVLRSIEARRIVLIVGAEGGFSPVEAEHIRAAGAQSVSLGQLILRAETA 231
Query: 272 TIALLA 277
+ LA
Sbjct: 232 AVTALA 237
>gi|385329169|ref|YP_005883472.1| hypothetical protein NMBB_2198 [Neisseria meningitidis alpha710]
gi|416174536|ref|ZP_11609218.1| hypothetical protein TIGR00046 [Neisseria meningitidis OX99.30304]
gi|421557915|ref|ZP_16003811.1| 16S rRNA methyltransferase RsmE [Neisseria meningitidis 80179]
gi|308390021|gb|ADO32341.1| hypothetical protein NMBB_2198 [Neisseria meningitidis alpha710]
gi|325129462|gb|EGC52292.1| hypothetical protein TIGR00046 [Neisseria meningitidis OX99.30304]
gi|402333356|gb|EJU68661.1| 16S rRNA methyltransferase RsmE [Neisseria meningitidis 80179]
Length = 241
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 113/247 (45%), Gaps = 24/247 (9%)
Query: 41 RGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV 100
R +P S G V + + H+ VLR+ N+ + LF+GKG + +++ +
Sbjct: 3 RFHLPENLSVGQTVALPDNIVRHLN-VLRVRPNENITLFDGKGKAHAARLTVLEKRRAEA 61
Query: 101 VAL-EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
L ED + N+ G R D+ ++K ELG ++ P+++E + R
Sbjct: 62 EILHED---TTDNESPLNITLIQSISSGERMDFTLQKSVELGVTAIQPVISERCI-VRLD 117
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
G+ + + ++ G + PP +LP++ + +E+T
Sbjct: 118 GERAAKRLARWQEIVISACEQSGRNTV------PP-----VLPIIGYREALDKMPSESTK 166
Query: 220 LVTALSSSRN-----ESSGLII--VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
L+ +++ +R + SG I+ VGPEG +TE+E + +AG AV LG LR ETA
Sbjct: 167 LIMSINRARKLGDIRQPSGAIVFMVGPEGGWTEQEEQQAFDAGFQAVTLGKRILRTETAP 226
Query: 273 IALLATL 279
+A LA +
Sbjct: 227 LAALAAM 233
>gi|254492891|ref|ZP_05106062.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268593962|ref|ZP_06128129.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268598139|ref|ZP_06132306.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268683436|ref|ZP_06150298.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|385337011|ref|YP_005890958.1| 16S ribosomal RNA methyltransferase RsmE [Neisseria gonorrhoeae
TCDC-NG08107]
gi|226511931|gb|EEH61276.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268547351|gb|EEZ42769.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268582270|gb|EEZ46946.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268623720|gb|EEZ56120.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|317165554|gb|ADV09095.1| 16S ribosomal RNA methyltransferase RsmE [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 241
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 114/249 (45%), Gaps = 29/249 (11%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRF+ S G V + + H+ VLR+ N+ + LF+GKG + +++
Sbjct: 1 MPRFYLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHTARLTVLEKHRA 59
Query: 99 DVVAL-EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
+ L ED + N+ G R D+ ++K ELG ++ P+++E + R
Sbjct: 60 EAEILHED---TTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCI-VR 115
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA 217
G+ + + ++ G + PP +LP++ + +E+
Sbjct: 116 LDGERAAKRLARWQEIVISACEQSGRNTV------PP-----VLPIIGYREALDKMPSES 164
Query: 218 TPLVTALSSSRN-----ESSGLII--VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
T L+ +++ +R SG I+ VGPEG +TE+E + EAG AV LG LR ET
Sbjct: 165 TRLIMSINRARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGFQAVTLGKRILRTET 224
Query: 271 ATIALLATL 279
A +A +A +
Sbjct: 225 APLAAIAAM 233
>gi|150025667|ref|YP_001296493.1| 16S ribosomal RNA methyltransferase RsmE [Flavobacterium
psychrophilum JIP02/86]
gi|149772208|emb|CAL43684.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
Length = 234
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 99/231 (42%), Gaps = 18/231 (7%)
Query: 57 EGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQW 116
+ +E H+ KVLR + D + + NG G L + V +E + P T +
Sbjct: 19 DKEESKHIIKVLRKTEGDILHVTNGLGNLFSTKVILASEKKC-TVKIETTETYQP--TDF 75
Query: 117 NVFAAFGTLK-GGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
+ A K R +W +EK TE+G +TP++ + RKI N + I
Sbjct: 76 YIHLAVAPTKMNDRFEWFLEKATEMGVHEITPIICDR--SERKIVKNE------RFDKII 127
Query: 176 NSAFVYGGQRLHEMV--LNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSG 233
SA Q L + LN P+ + L +A E T ++ + +
Sbjct: 128 LSAM---KQSLQFFLPKLNEPISFKDFINEQHDGNLC-IAHCEETNKKLLKNTIKAKEKY 183
Query: 234 LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSD 284
I++GPEGDF+EKE+ + V LG RLR ETA + +++ ++
Sbjct: 184 TILIGPEGDFSEKEIQLALANNYIPVSLGNTRLRTETAAVVACHSVVFVNE 234
>gi|339444982|ref|YP_004710986.1| hypothetical protein EGYY_14350 [Eggerthella sp. YY7918]
gi|338904734|dbj|BAK44585.1| hypothetical protein EGYY_14350 [Eggerthella sp. YY7918]
Length = 277
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 110/253 (43%), Gaps = 31/253 (12%)
Query: 44 IPRFFSQGGIV----------RVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRI 93
+P F+ + ++ R+ ++ H +VLRL+ + V + + E I
Sbjct: 3 LPHFYVEDQVIAHEDATVFPLRLSREDAKH-ARVLRLAIGEHVAVVDAAQDYFECEIMSF 61
Query: 94 DRTGLDVVALEDLKLVLPQHTQW-NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTEL 152
D D + + + L H + ++ G KG + D ++ TELG P + E
Sbjct: 62 D----DAMPMVRIAQRLETHDEGPSIVLVQGLAKGDKMDMIIRHATELGVAGFVPFVCER 117
Query: 153 HLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFV 212
+ K+ + + + IA SA + GQR+ V P M +D + ++Q+ V
Sbjct: 118 SIV--KLDERKAAARTERWHAIAKSAAMQSGQRMVPEVTQP-MPLDEVCQRIAQATAVVV 174
Query: 213 AIAEA-------TPLVTALSSS---RNESSGLIIVGPEGDFTEKEVNKIVEAG--ATAVG 260
EA LV L S+ +++ ++VGPEG TE EV+ ++ A+ V
Sbjct: 175 CWEEAPTTADIEHALVKGLDSTLMPAHDARVAVVVGPEGGLTEHEVSALLGCNERASLVS 234
Query: 261 LGPHRLRVETATI 273
LGP LR ETA I
Sbjct: 235 LGPSILRTETAGI 247
>gi|269469135|gb|EEZ80680.1| hypothetical protein Sup05_0073 [uncultured SUP05 cluster
bacterium]
Length = 238
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 105/225 (46%), Gaps = 13/225 (5%)
Query: 59 DEFW--HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQW 116
DE+ H+ KVLR + LFNG G + + ++ ++ L ++
Sbjct: 21 DEYCSHHLIKVLRFPQGKNITLFNGDGINYSAKVISSKKKCEVLILTKEQNL---SESKL 77
Query: 117 NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIAN 176
N+ A G KG + D+L++K ELG + P+++E H + G+ ++ I
Sbjct: 78 NLTLAQGIAKGEKMDFLIQKAVELGVNKIVPIMSE-HCVVKLKGEK-LTKRQLHWQKIVF 135
Query: 177 SAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLII 236
A G+ + V P+ ++ L + + F+ +T + L NE++ I+
Sbjct: 136 GACEQSGRSIVPNV-ETPITLNDFLDQTTTN--GFILHHRSTQTLLELEH-MNEAT--IL 189
Query: 237 VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
+GPEG +EKE+ + +G ++ LG LR ETA++ +A + L
Sbjct: 190 IGPEGGLSEKEIEQATSSGYQSLLLGSRVLRTETASLVAIANMQL 234
>gi|257055398|ref|YP_003133230.1| hypothetical protein Svir_13560 [Saccharomonospora viridis DSM
43017]
gi|256585270|gb|ACU96403.1| conserved hypothetical protein TIGR00046 [Saccharomonospora viridis
DSM 43017]
Length = 243
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 95/231 (41%), Gaps = 9/231 (3%)
Query: 52 GIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLP 111
G +EG+E H V RL +R+ L +G+GGL + C+ G + +L++
Sbjct: 11 GFAVLEGEEAHHAVTVRRLREGERLALSDGRGGLAD-CVAHAVHPGRNPTV--ELRVETT 67
Query: 112 QHTQ---WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCN 168
+H V A KG R + VE TE G +V P + G G +
Sbjct: 68 RHVSAPALRVTVAQALAKGDRGELAVETATEAGVDAVVPWRAARSVARWDDGPRGAKALA 127
Query: 169 FYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSR 228
+ +A + E+ PM L ++++ LA V +A+ +
Sbjct: 128 KWRATARAAAKQARRAWVPEV--TEPMTTRQLAARIAETDLALVLDGDASESFVDVDFP- 184
Query: 229 NESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
E L++VGPEG +E VEAGA V LGP LR TA L L
Sbjct: 185 EEGELLLVVGPEGGVAPEERATFVEAGARCVRLGPTVLRTSTAATVALGAL 235
>gi|313674581|ref|YP_004052577.1| hypothetical protein Ftrac_0464 [Marivirga tractuosa DSM 4126]
gi|312941279|gb|ADR20469.1| protein of unknown function DUF558 [Marivirga tractuosa DSM 4126]
Length = 231
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 101/234 (43%), Gaps = 26/234 (11%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQ--RIDRTGLDVVAL-EDLKLVLPQ 112
++ DE H KVLR D +++ +GKG + I + ++++ ++ K+ +
Sbjct: 15 LDQDESKHCIKVLRKQQGDELDIIDGKGTFYKAKITDASAKKCRFEIISTTQERKVAFHR 74
Query: 113 HTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYG 172
H A T + +WLVEK TE+G ++ H + + I
Sbjct: 75 H-----LAIAPTKNMDKMEWLVEKATEMGIDEIS-FFQSFHSERKVIK----------IE 118
Query: 173 FIANSAFVYGGQRLH--EMVLNPPMKIDGLLPL--VSQSKLAFVAIAEATPLVTALSSSR 228
+ A Q L + +LN + L VS +A+V + LS
Sbjct: 119 RLEKKAISAMKQSLKAKKPLLNEIIPYKQFLKETDVSNKLIAYVDFKNKIHMKNELS--- 175
Query: 229 NESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLC 282
++ L+++GPEGDFT +EV+ +E V LG RLR ETA +A + + L
Sbjct: 176 HQQDTLVLIGPEGDFTPEEVSLAIENRYKKVSLGNSRLRTETAALAAVHLMNLA 229
>gi|169832194|ref|YP_001718176.1| hypothetical protein Daud_2054 [Candidatus Desulforudis audaxviator
MP104C]
gi|169639038|gb|ACA60544.1| protein of unknown function DUF558 [Candidatus Desulforudis
audaxviator MP104C]
Length = 249
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 104/247 (42%), Gaps = 17/247 (6%)
Query: 44 IPRFFSQGGIVR------VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTG 97
IPR F G R + GD+ H+T+VLRL+ + L +G G I+ +DR G
Sbjct: 3 IPRVFVPPGRWRGREEAWITGDDARHLTRVLRLAAGSELLLLDGSGRAYAAEIREVDRDG 62
Query: 98 LDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHL 154
+ V + LP V KG R + LV+K TE+G ++ P+++E + L
Sbjct: 63 VRAVITGPAE--LPADPGLRVTLVPSLAKGDRMEDLVQKATEVGVAAIVPVISERTVVRL 120
Query: 155 QSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI 214
K G + IA A + L V D L L + F+
Sbjct: 121 TPEKAGRR-----VERWRRIATEAAEQCRRPLVPDVHGVCRFEDALKRLPAGGAAFFLWE 175
Query: 215 AE-ATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
E T L AL S + GPEG FT +E GA +V LGP LR +TA +
Sbjct: 176 EERGTGLKQALRSRAPVREVFLFTGPEGGFTPEEAAAATARGAVSVSLGPRLLRTDTAGV 235
Query: 274 ALLATLM 280
+A ++
Sbjct: 236 VAVALVL 242
>gi|163850332|ref|YP_001638375.1| hypothetical protein Mext_0899 [Methylobacterium extorquens PA1]
gi|163661937|gb|ABY29304.1| protein of unknown function DUF558 [Methylobacterium extorquens
PA1]
Length = 250
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 106/244 (43%), Gaps = 23/244 (9%)
Query: 45 PRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PR F ++G ++ +E + ++ VLR + + V LFNG+ G I R D
Sbjct: 9 PRLFVEADLAEGRVLPLERAQANYLLTVLRRAEGEPVLLFNGRDGEWRAEIVPQGRKSAD 68
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
+ + + PQ ++ F LK GR D++ +K E+GA + P+ T R
Sbjct: 69 LRVVAQTR---PQPAPADLHYLFAPLKTGRIDYMAQKAVEMGAGRLQPVFTRFTQGERIK 125
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA-- 217
D L N A + + E P ++ L + ++L +A
Sbjct: 126 LDR--LQANAIEA--AEQCGILSVPEIGE-----PARLPACLDALEANRLLVFCDEDASV 176
Query: 218 TPLVTALSSSRNESSG---LIIVGPEGDFTEKEVNKIVEAGAT-AVGLGPHRLRVETATI 273
T V AL + N +S ++VGPEG F +E I T A+ LGP LR +TA +
Sbjct: 177 TDPVVALRGAANPASPPPLAVLVGPEGGFHAEERALIAARPNTVALSLGPRILRADTAAV 236
Query: 274 ALLA 277
A+LA
Sbjct: 237 AVLA 240
>gi|357051395|ref|ZP_09112588.1| hypothetical protein HMPREF9478_02571 [Enterococcus saccharolyticus
30_1]
gi|355379904|gb|EHG27053.1| hypothetical protein HMPREF9478_02571 [Enterococcus saccharolyticus
30_1]
Length = 251
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 97/237 (40%), Gaps = 15/237 (6%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKL--VLPQH 113
VEG+ F HM +V+R+ +D V L I IQ+ID + ++ +E + LP H
Sbjct: 18 VEGEPFHHMVRVMRMVPDDCVYLVFQDQVAILAKIQQIDEQAVHLIEVEKEQQDKELPIH 77
Query: 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGF 173
V A G KG + + +V+K TELGA + + K
Sbjct: 78 ----VTIASGYPKGDKLELIVQKGTELGAAKFIGFPAQSSV--VKWDHKKLQKKQQRLQK 131
Query: 174 IANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP------LVTALSSS 227
IA A QR ++ L +S VA E+ L+ LS +
Sbjct: 132 IAQEA-AEQAQRQRAPIIQLAASDKELWDSLSNYDYVIVAYEESAKSGENAKLIDILSKA 190
Query: 228 RNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSD 284
S L I GPEG T E+ + GA GLGP LR ETA L+ + + ++
Sbjct: 191 APGSKILAIFGPEGGLTPAEITRAESQGAVICGLGPRILRTETAPFYFLSAVSVLTE 247
>gi|313200262|ref|YP_004038920.1| hypothetical protein MPQ_0502 [Methylovorus sp. MP688]
gi|312439578|gb|ADQ83684.1| conserved hypothetical protein [Methylovorus sp. MP688]
Length = 243
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 100/242 (41%), Gaps = 34/242 (14%)
Query: 45 PRFFSQ-----GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PRFFS + + H KVLRL D + LFNG G I+ I + +
Sbjct: 4 PRFFSDVPLTSNSSITLPATAANHAIKVLRLQVGDALRLFNGDGHDYSAEIETIRKN--E 61
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
V+ + + ++ + A G G R D+ ++K ELG ++ P+ ++ + K+
Sbjct: 62 VIVKTGQAVAVSNESRLKITLAQGISAGDRMDFTIQKSVELGIHTIQPISSQRSVV--KL 119
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
+ ++ +A SA G+ LP V Q+ ++ A P
Sbjct: 120 SGDRADKRREHWQNVAISACEQSGR--------------AFLPEVGQATSLAKWLSSAPP 165
Query: 220 LVT-----ALSSSRNESSGL------IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRV 268
T L+S+R + L +++GPEG T +E+ G T V LGP LR
Sbjct: 166 FATRITLDPLASTRLQDLPLPQGPICLLIGPEGGLTSEEIAMAASQGFTGVQLGPRILRT 225
Query: 269 ET 270
ET
Sbjct: 226 ET 227
>gi|197303723|ref|ZP_03168760.1| hypothetical protein RUMLAC_02452 [Ruminococcus lactaris ATCC
29176]
gi|197297243|gb|EDY31806.1| RNA methyltransferase, RsmE family [Ruminococcus lactaris ATCC
29176]
Length = 249
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 109/267 (40%), Gaps = 51/267 (19%)
Query: 46 RFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGL----IEGCIQRIDRTGLDVV 101
R + QG +R+EG + HM VLR+ + V++ +G G IEG ++ L +
Sbjct: 8 RSWVQGDKIRLEGSDVNHMKNVLRMKEGEEVQVSDGTGNAYLCQIEGY--EGNQAVLKIR 65
Query: 102 ALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRK 158
+ LP ++ G KG + + +V+K ELG + P + + L +K
Sbjct: 66 EKTEKDTELPS----KIWLFQGLPKGDKMELIVQKAVELGVYGIVPFAAKRSVVRLDEKK 121
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT 218
G + IA A G+ GL+P V K A+ A
Sbjct: 122 AGKK-----QIRWQAIAKGAAEQSGR--------------GLIPEVEIVKTYAEALEFAK 162
Query: 219 PL----------------VTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLG 262
L ++ + + R S I +GPEG F E+E+ + AGA V LG
Sbjct: 163 ELDVILVPYELEEGMKATMSIIEAIRPGQSVGIFIGPEGGFEEQEIGQARNAGAVPVTLG 222
Query: 263 PHRLRVETATIALLATLML---CSDSQ 286
LR ETA I L+ LM C++ Q
Sbjct: 223 RRILRTETAGITTLSILMYHLECAEVQ 249
>gi|384917894|ref|ZP_10017995.1| 16S ribosomal RNA methyltransferase RsmE [Citreicella sp. 357]
gi|384468198|gb|EIE52642.1| 16S ribosomal RNA methyltransferase RsmE [Citreicella sp. 357]
Length = 208
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 94/211 (44%), Gaps = 16/211 (7%)
Query: 68 LRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAFGTLKG 127
+RLS+ ++LFNG+ G + + G + L+ Q +++ F +K
Sbjct: 1 MRLSSGAALKLFNGQDGEWLAEVSEAGKKGGAAICTAPLR---DQSMPCDLWLLFAPIKK 57
Query: 128 GRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLH 187
R D++VEK ELG + P+ T+ R D +A G LH
Sbjct: 58 ARTDFIVEKAVELGVSRILPVQTQFTNSDRIRQDR-------LQAHAMEAAEQCGA--LH 108
Query: 188 EMVLNPPMKIDGLLP-LVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEK 246
+ ++D LL ++ KL F AEA ALS + + I++GPEG F++
Sbjct: 109 VPQVGDLTRLDHLLSNWPTERKLLFCDEAEAGARAPALSGA--PAPAAILIGPEGGFSDA 166
Query: 247 EVNKIVEAGATAV-GLGPHRLRVETATIALL 276
E N++ T V LGP LR +TA +A L
Sbjct: 167 ERNRLHAMDQTRVIALGPRILRADTAAVAAL 197
>gi|334140088|ref|YP_004533288.1| 16S ribosomal RNA methyltransferase RsmE [Novosphingobium sp. PP1Y]
gi|333938112|emb|CCA91470.1| 16S ribosomal RNA methyltransferase RsmE [Novosphingobium sp. PP1Y]
Length = 252
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 110/244 (45%), Gaps = 23/244 (9%)
Query: 45 PRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PR F G I V +EG + +++KV+R+S D V L + + G E + D
Sbjct: 13 PRLFVPGPIALAAHVAIEGAQAHYLSKVMRVSAGDAVILCDDETG--EWACAVVSAGKRD 70
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
VV LE + + P+ N LK D ++EK TELG + + P++T R +
Sbjct: 71 VV-LEARERLRPREQVPNFTLCAALLKKPNFDLVLEKATELGVRCIQPVVTR-----RCV 124
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIA-EAT 218
D L+ + +A L E L P+K++ LL + + F A
Sbjct: 125 ADK--LNPERARTMVTEAAEQCARTALPE--LAEPLKLEALLRDWPEDRALFFADELGGE 180
Query: 219 PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEA--GATAVGLGPHRLRVETATIALL 276
P ++ R ++ ++VGPEG F E E ++ A A + LGP LR ETA+IA
Sbjct: 181 PAAAQFAAHRGPAA--LLVGPEGGFDEGE-RALIRALPQARPITLGPRILRGETASIAAT 237
Query: 277 ATLM 280
A M
Sbjct: 238 ALWM 241
>gi|421730938|ref|ZP_16170064.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|407075092|gb|EKE48079.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus
amyloliquefaciens subsp. plantarum M27]
Length = 256
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 100/242 (41%), Gaps = 33/242 (13%)
Query: 55 RVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHT 114
++ G++ H+ V+R+S DR+ + K G C+ L V+ + + + + T
Sbjct: 20 QITGEDVHHIANVMRMSAGDRI-ICCSKDGHEALCL-------LKAVSKDHISCSIAEWT 71
Query: 115 QWN------VFAAFGTLKGGRADWLVEKCTELGAQSVTPL-----------LTELHLQSR 157
N + A G KG + +W+++K TELGA P + R
Sbjct: 72 GENRELPLKIRIASGLPKGDKLEWIIQKGTELGASMFIPFQGARSVVKLDDKKAKKKRER 131
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA 217
+ Y I V+ ++L EM N +D + +S E
Sbjct: 132 WAKIAKEAAEQSYRNEIPEVKTVHTFRQLLEMAEN----VDKCVVAYEESSKQ----GET 183
Query: 218 TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
L S SS LI+ GPEG TE EV+++ E GA GLGP LR ETA + L+
Sbjct: 184 GAFAAELKSLPQGSSLLIVFGPEGGLTESEVHQLSEKGAVLCGLGPRILRTETAPLYALS 243
Query: 278 TL 279
+
Sbjct: 244 AV 245
>gi|297544383|ref|YP_003676685.1| hypothetical protein Tmath_0939 [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296842158|gb|ADH60674.1| protein of unknown function DUF558 [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 245
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 102/235 (43%), Gaps = 24/235 (10%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQ 115
+EG + H+ VLRL D + + +G +T + V + L L Q
Sbjct: 18 IEGKDTHHIINVLRLKKGDEIVISDGSTEY---------QTSIYGVEKNRVILFLESKLQ 68
Query: 116 WNVFAAF------GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNF 169
N ++ G K + + +++KCTE+G + P++T + K N L+
Sbjct: 69 SNTESSIEIALFQGLPKSDKMELIIQKCTEIGVKKFIPIITRYSVVDIK---NSNLNKKI 125
Query: 170 -YYGFIANSAFVYGGQ-RLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT--PLVTALS 225
+ I+ A G+ L E+ + P+ + L + + L + + L L
Sbjct: 126 ERWNKISREACKQSGRTSLPEICM--PISFEEALKQIEEFDLCIIPYEKEKTLKLKEVLD 183
Query: 226 SSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
+N I +GPEG F+E+EV+ + A V LGP LR ETA I++ + +M
Sbjct: 184 GVKNIKKVAIFIGPEGGFSEEEVDLALRYSAKLVSLGPRILRTETAAISVCSIVM 238
>gi|399991507|ref|YP_006571747.1| RNA methyltransferase-like protein [Phaeobacter gallaeciensis DSM
17395 = CIP 105210]
gi|398656062|gb|AFO90028.1| RNA methyltransferase-like protein [Phaeobacter gallaeciensis DSM
17395 = CIP 105210]
Length = 242
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 104/229 (45%), Gaps = 16/229 (6%)
Query: 51 GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCI-QRIDRTGLDVVALEDLKLV 109
G V ++ D+ ++ V+R + ++ LFNG+ G + + R+G+ + + LV
Sbjct: 16 GQSVPLDRDQAHYLFGVMRQTVGAQLLLFNGEDGEWRAEVAEASKRSGVLICQEQTRPLV 75
Query: 110 LPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNF 169
LP +++ F +K R D++VEK E+GA + P+ TE R D
Sbjct: 76 LPP----DLWLLFAPIKKARTDFIVEKAAEMGAARILPVQTEFTNSDRIRQDR------- 124
Query: 170 YYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLP-LVSQSKLAFVAIAEATPLVTALSSSR 228
+A GG + E+ K+ LL + +L F AE + S +
Sbjct: 125 LQAHAVEAAEQCGGTYVPEVA--DLQKLSRLLDHWPEERQLMFCDEAEVGSALALASETA 182
Query: 229 NESSGLIIVGPEGDFTEKEVNKI-VEAGATAVGLGPHRLRVETATIALL 276
++ I++GPEG F+E E ++ + V LGP LR +TA +A L
Sbjct: 183 AQAPWAIVIGPEGGFSEAERKRLHALPQSHVVSLGPRILRADTAAVAAL 231
>gi|315127638|ref|YP_004069641.1| hypothetical protein PSM_A2576 [Pseudoalteromonas sp. SM9913]
gi|315016152|gb|ADT69490.1| hypothetical protein PSM_A2576 [Pseudoalteromonas sp. SM9913]
Length = 244
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 108/233 (46%), Gaps = 18/233 (7%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE----DLKLV 109
+ ++ D H+ +VLR+ ++V +FNG+GG I + + + V+ LE D++
Sbjct: 18 LNLDDDAAGHVGRVLRMKVGEQVSMFNGEGGEFLSEIIEVSKKTVVVMPLEFNPHDVESP 77
Query: 110 LPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNF 169
L H V +G + D+ ++K ELG +TP+ ++ K+ + +
Sbjct: 78 LKIHLGQCVS------RGDKMDFTIQKSVELGITEITPIFSQRC--GVKLSGDRLEKKHQ 129
Query: 170 YYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS-KLAFVAIAEATPLVTALSSSR 228
+ IA +A G+ ++NPP+ + L + + KL AE + +
Sbjct: 130 QWQKIAIAAAEQSGRNFVP-IINPPVDLKHWLEQQTDAIKLTLHPRAEHSIKTITVP--- 185
Query: 229 NESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
+ +VGPEG FT+ E+ + + + LGP LR ETA + +L+ L L
Sbjct: 186 -DGGVRFLVGPEGGFTDDEMAQTKQQEFVDIRLGPRVLRTETAALTVLSALQL 237
>gi|212217753|ref|YP_002304540.1| 16S ribosomal RNA methyltransferase RsmE [Coxiella burnetii
CbuK_Q154]
gi|212012015|gb|ACJ19395.1| hypothetical cytosolic protein [Coxiella burnetii CbuK_Q154]
Length = 270
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 100/235 (42%), Gaps = 16/235 (6%)
Query: 45 PRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE 104
P S V ++ + ++ VLRL ++ LFNG G G I RI + +++
Sbjct: 38 PDQLSVDSTVTLDSRNYHYLLNVLRLREGHKIILFNGDGNNYGGRITRIQKKQVEITI-- 95
Query: 105 DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGF 164
D K + + G + + D+ ++K ELG + PL+TE R
Sbjct: 96 DSKEAGRTESSLFIELGQGIFRSEKMDYAIQKAVELGVNRIVPLITE-----RTSTKPKT 150
Query: 165 LSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSK--LAFVAIAEATPLVT 222
+ G + + G ++ + M+ L +SQ + L+ V A +
Sbjct: 151 QKLAHWQGVL-----ISGCEQSGRCCIPELMQAQSLSDWLSQKREGLSLVCHPNAQNSLA 205
Query: 223 ALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
++ + +++GPEG ++ EV + ++G + LGP LR ETAT+ L+
Sbjct: 206 DFKTTSQRIT--LLIGPEGGLSDDEVQRATQSGFQVLFLGPRILRTETATVTALS 258
>gi|433455811|ref|ZP_20413881.1| 16S ribosomal RNA methyltransferase RsmE [Arthrobacter
crystallopoietes BAB-32]
gi|432197169|gb|ELK53571.1| 16S ribosomal RNA methyltransferase RsmE [Arthrobacter
crystallopoietes BAB-32]
Length = 253
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 105/253 (41%), Gaps = 28/253 (11%)
Query: 45 PRFFSQ---------GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDR 95
P FF++ GG+ + G E H V RL+ + V++ +G G + G +
Sbjct: 4 PVFFAEPGEFDGVAPGGLFVLTGAEARHAVAVKRLAAGEAVDIVDGTGKRLSGVVASASP 63
Query: 96 TGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQ 155
L V A + L +N+ KG R + +E TELG V P +E +
Sbjct: 64 QELAVRAD---AVALDPAPPFNLTLVQALAKGDRDELAIEAATELGVDRVVPWQSERSIV 120
Query: 156 SRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPM-KIDGLLPL---VSQSKLAF 211
+ G A V + P + + GL L +++S+LA
Sbjct: 121 R-------WRDAKAAKGQAKWEATVKAAAKQSRRAAVPAVGALVGLKELCGQIAESRLAL 173
Query: 212 VAIAEAT---PLVTALSSSRNESSG--LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRL 266
+ EA P A + ++ G L+IVGPEG + EV ++ AGA AV LGPH L
Sbjct: 174 ILHEEAEQTLPEAVAAAGLSADTGGSILMIVGPEGGMSPNEVEQMRAAGAIAVRLGPHVL 233
Query: 267 RVETATIALLATL 279
R TA A + L
Sbjct: 234 RSSTAGPAAVTLL 246
>gi|424902860|ref|ZP_18326373.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia
thailandensis MSMB43]
gi|390930733|gb|EIP88134.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia
thailandensis MSMB43]
Length = 255
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 100/241 (41%), Gaps = 25/241 (10%)
Query: 44 IPRFFSQGGIVRVEGD-------EFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRT 96
+PRFF + + D + +VLRL D + LF+G GG I IDR
Sbjct: 10 VPRFFVDAAL---QADATLPLPVDVARHAQVLRLQPGDLLALFDGTGGQYRARIVEIDRR 66
Query: 97 GLDVVALEDLKLVLPQHTQ--WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHL 154
G AL + P + + V A G G + DW++EK ELG +V PL T +
Sbjct: 67 G----ALARIDAFEPVEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGV 122
Query: 155 QSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMK-----IDGLLPLVSQSKL 209
+ G+ + + G + S G R+ ++ P++ +D L ++ +L
Sbjct: 123 -VKLSGERADKRVSHWRGVVRASCEQCGRNRVPDVA---PVRGFDAWLDALPAAPAEGEL 178
Query: 210 AFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVE 269
+ A+ L + +++GPEG + E G A+ LGP LR E
Sbjct: 179 RLLLSPRASVPFALLPDAPPAGDVTLLIGPEGGLSPDEERAARARGFAALSLGPRVLRTE 238
Query: 270 T 270
T
Sbjct: 239 T 239
>gi|87134653|gb|ABD25395.1| conserved hypothetical protein [Novosphingobium aromaticivorans DSM
12444]
Length = 258
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 106/242 (43%), Gaps = 19/242 (7%)
Query: 45 PRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PR F QG + V+G + ++ KV+R+ST D V L + G + R+ G
Sbjct: 22 PRLFVEMPLDQGMRLPVDGQQAHYLGKVMRVSTGDAVMLCDDATG---EWVSRVAEVGKR 78
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
+ LE + P+ + + LK D ++EK TELGA V P++T R +
Sbjct: 79 DLVLEIERRTRPREEVPDFWLCAALLKKPNFDLVLEKATELGAARVVPVVTR-----RCV 133
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
D L+ + +A L L +K+D LL + + F A E
Sbjct: 134 ADK--LNPERARTIMVEAAEQCARTALPS--LGETVKLDQLLRDWPEGRTLFFA-DENGG 188
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKI-VEAGATAVGLGPHRLRVETATIALLAT 278
+ A + S + ++VGPEG F E E + I A + LGP LR ETA+IA +
Sbjct: 189 IPAAAAFSLHCGPAALLVGPEGGFDETERSAIRAHPAAVGIALGPRILRGETASIAGMGL 248
Query: 279 LM 280
M
Sbjct: 249 WM 250
>gi|256961537|ref|ZP_05565708.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
gi|256952033|gb|EEU68665.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
Length = 250
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 108/247 (43%), Gaps = 29/247 (11%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVEL-FNGKGGLIEGCIQRIDRTGL--DVVALE 104
+ + + +V + + H+ +V+R++ ND L F K ++ ++ ID T + ++ E
Sbjct: 10 YQEKDLYKVADENYHHIVRVMRMTPNDHCYLVFQNKTAILAEIVE-IDSTSVYFKEISKE 68
Query: 105 DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSV------TPLLTELHLQSRK 158
++ LP V A G KG + +W+V+K TELG T ++ H + R
Sbjct: 69 EMDKELP----IEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDH-KKRA 123
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA- 217
+ IA A R ++ K ++ VA E+
Sbjct: 124 AKEKRLQK-------IATEA-AEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESA 175
Query: 218 -----TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
+ L LS+ + + ++ GPEG F +E+ + ++AGA GLGP LR ETA
Sbjct: 176 KQGEKSQLAQVLSTCQPGARLCVLFGPEGGFAPQEIEQFLQAGAKLCGLGPRILRAETAP 235
Query: 273 IALLATL 279
+ LL+ +
Sbjct: 236 LYLLSAV 242
>gi|418408129|ref|ZP_12981446.1| 16S ribosomal RNA methyltransferase RsmE [Agrobacterium tumefaciens
5A]
gi|358006115|gb|EHJ98440.1| 16S ribosomal RNA methyltransferase RsmE [Agrobacterium tumefaciens
5A]
Length = 245
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 14/211 (6%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
++F ++ VLR++ + LFNG+ G + + R + ++ LE + PQ ++
Sbjct: 27 EQFNYLANVLRMTDGAEILLFNGRDGEWKARLSFPSRKKITLIPLEQTR---PQPPASDL 83
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSA 178
F LK GR D+LV+K E+GA + P++T+ H+Q KI + L N
Sbjct: 84 HYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQ-HVQG-KIHNTEKLRANAIEAAEQCGI 141
Query: 179 FVYGGQRLHEMVLNPPMKIDGLLPLVSQS-KLAFVAIAEATPLVTALSSSRNESSGLIIV 237
G + P+K+ +L Q ++ + +A + S E ++V
Sbjct: 142 LSLPG-------VAEPVKLKDMLETWPQDRRIIYCDEGDAGQNPLPVLQSIKERKIALLV 194
Query: 238 GPEGDFTEKEVNKIVE-AGATAVGLGPHRLR 267
GPEG F+E+E + A T + LGP LR
Sbjct: 195 GPEGGFSEEERELLRSLAFVTPIPLGPRILR 225
>gi|400753151|ref|YP_006561519.1| RNA methyltransferase-like protein [Phaeobacter gallaeciensis 2.10]
gi|398652304|gb|AFO86274.1| RNA methyltransferase-like protein [Phaeobacter gallaeciensis 2.10]
Length = 242
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 104/229 (45%), Gaps = 16/229 (6%)
Query: 51 GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCI-QRIDRTGLDVVALEDLKLV 109
G V ++ D+ ++ V+R + ++ LFNG+ G + + R+G+ + + LV
Sbjct: 16 GQSVPLDRDQAHYLFGVMRQTVGAQLLLFNGEDGEWRAEVAEASKRSGVLICQEQTRPLV 75
Query: 110 LPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNF 169
LP +++ F +K R D++VEK E+GA + P+ TE R D
Sbjct: 76 LPP----DLWLLFAPIKKARTDFIVEKAAEMGAARILPVQTEFTNSDRIRQDR------- 124
Query: 170 YYGFIANSAFVYGGQRLHEMV-LNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSR 228
+A GG + E+V L ++ P + +L F AE + +
Sbjct: 125 LQAHAVEAAEQCGGTYVPEVVDLQKLSRVLDHWP--EERQLMFCDEAEVGSALALARDTA 182
Query: 229 NESSGLIIVGPEGDFTEKEVNKI-VEAGATAVGLGPHRLRVETATIALL 276
++ I++GPEG F+E E ++ + V LGP LR +TA +A L
Sbjct: 183 VQAPWAIVIGPEGGFSEAERKRLHALPQSHVVSLGPRILRADTAAVAAL 231
>gi|451346250|ref|YP_007444881.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus
amyloliquefaciens IT-45]
gi|449850008|gb|AGF27000.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus
amyloliquefaciens IT-45]
Length = 256
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 100/242 (41%), Gaps = 33/242 (13%)
Query: 55 RVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHT 114
++ G++ H+ V+R+S DR+ + K G C+ L V+ + + + + T
Sbjct: 20 QITGEDVHHIANVMRMSAGDRI-ICCSKDGHEALCL-------LKAVSKDHISCSIAEWT 71
Query: 115 QWN------VFAAFGTLKGGRADWLVEKCTELGAQSVTPL-----------LTELHLQSR 157
N + A G KG + +W+++K TELGA P + R
Sbjct: 72 GENRELPLKIRIASGLPKGDKLEWVIQKGTELGASMFIPFQGARSVVKLDDKKAKKKRER 131
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA 217
+ Y I V+ ++L EM N +D + +S E
Sbjct: 132 WAKIAKEAAEQSYRNEIPEVKTVHTFRQLLEMAEN----VDKCVVAYEESSKQ----GET 183
Query: 218 TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
L S SS LI+ GPEG TE EV+++ E GA GLGP LR ETA + L+
Sbjct: 184 GAFAAELKSLPQGSSLLIVFGPEGGLTESEVHQLSEKGAVLCGLGPRILRTETAPLYALS 243
Query: 278 TL 279
+
Sbjct: 244 AV 245
>gi|259046670|ref|ZP_05737071.1| RsmE family RNA methyltransferase [Granulicatella adiacens ATCC
49175]
gi|259036835|gb|EEW38090.1| RsmE family RNA methyltransferase [Granulicatella adiacens ATCC
49175]
Length = 249
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 103/254 (40%), Gaps = 31/254 (12%)
Query: 44 IPRFFSQGGI------VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTG 97
+ R+F +G + + ++ + KV+R+ ++ E+ + L
Sbjct: 1 MQRYFVKGIVSETTHSLEFSKEQIHQLKKVMRMKVEEQFEVVDENSTL----------AI 50
Query: 98 LDVVALEDLKL----VLPQHTQWNVFAAF--GTLKGGRADWLVEKCTELGAQSVTPLLTE 151
+++V LE ++ L Q + VF A G KG + DW+V+K TELG + P+ E
Sbjct: 51 VELVCLEPFEVRVIKTLNQKVELPVFTAIAVGLSKGDKLDWIVQKATELGVNEIIPI--E 108
Query: 152 LHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAF 211
+ K + IA A RL ++ M ID L+
Sbjct: 109 MSRNVVKWNKDKASKKTERLQKIAEEA-SEQSHRLKLPFVSEVMTIDSLIEYTKTYHQKL 167
Query: 212 VAIAEATP------LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHR 265
+A EA LV +L + + + + GPEG EKEV K+ LGP
Sbjct: 168 IAYEEAAKEGERVQLVKSLQALKEGEKIVFVFGPEGGIDEKEVAKLQMNEFHTCSLGPRI 227
Query: 266 LRVETATIALLATL 279
LR ETA + L+ L
Sbjct: 228 LRAETAPLYALSAL 241
>gi|164685878|ref|ZP_01945479.2| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177']
gi|165918716|ref|ZP_02218802.1| conserved hypothetical protein [Coxiella burnetii Q321]
gi|164601398|gb|EAX33970.2| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177']
gi|165917544|gb|EDR36148.1| conserved hypothetical protein [Coxiella burnetii Q321]
Length = 244
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 100/235 (42%), Gaps = 16/235 (6%)
Query: 45 PRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE 104
P S V ++ + ++ VLRL ++ LFNG G G I RI + +++
Sbjct: 12 PDQLSVDSTVTLDSRNYHYLLNVLRLREGHKIILFNGDGNNYGGRITRIQKKQVEITI-- 69
Query: 105 DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGF 164
D K + + G + + D+ ++K ELG + PL+TE R
Sbjct: 70 DSKEAGRTESSLFIELGQGIFRSEKMDYAIQKAVELGVNRIVPLITE-----RTSTKPKT 124
Query: 165 LSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSK--LAFVAIAEATPLVT 222
+ G + + G ++ + M+ L +SQ + L+ V A +
Sbjct: 125 QKLAHWQGVL-----ISGCEQSGRCCIPELMQAQSLSDWLSQKREGLSLVCHPNAQNSLA 179
Query: 223 ALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
++ + +++GPEG ++ EV + ++G + LGP LR ETAT+ L+
Sbjct: 180 DFKTTSQRIT--LLIGPEGGLSDDEVQRATQSGFQVLFLGPRILRTETATVTALS 232
>gi|229324846|ref|YP_496229.2| 16S ribosomal RNA methyltransferase RsmE [Novosphingobium
aromaticivorans DSM 12444]
Length = 249
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 106/242 (43%), Gaps = 19/242 (7%)
Query: 45 PRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PR F QG + V+G + ++ KV+R+ST D V L + G + R+ G
Sbjct: 13 PRLFVEMPLDQGMRLPVDGQQAHYLGKVMRVSTGDAVMLCDDATG---EWVSRVAEVGKR 69
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
+ LE + P+ + + LK D ++EK TELGA V P++T R +
Sbjct: 70 DLVLEIERRTRPREEVPDFWLCAALLKKPNFDLVLEKATELGAARVVPVVTR-----RCV 124
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
D L+ + +A L L +K+D LL + + F A E
Sbjct: 125 ADK--LNPERARTIMVEAAEQCARTALPS--LGETVKLDQLLRDWPEGRTLFFA-DENGG 179
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKI-VEAGATAVGLGPHRLRVETATIALLAT 278
+ A + S + ++VGPEG F E E + I A + LGP LR ETA+IA +
Sbjct: 180 IPAAAAFSLHCGPAALLVGPEGGFDETERSAIRAHPAAVGIALGPRILRGETASIAGMGL 239
Query: 279 LM 280
M
Sbjct: 240 WM 241
>gi|297584653|ref|YP_003700433.1| hypothetical protein [Bacillus selenitireducens MLS10]
gi|297143110|gb|ADH99867.1| protein of unknown function DUF558 [Bacillus selenitireducens
MLS10]
Length = 250
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 104/232 (44%), Gaps = 19/232 (8%)
Query: 58 GDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQW- 116
GD+ H++KV+R++ DR+ G IQ + +L+ L + ++
Sbjct: 20 GDDAHHISKVMRMTDGDRIICCMPDGSCGTATIQSTAEGRVHA----ELETWLKETSEMP 75
Query: 117 -NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
V A G KG + + +++K TELG SV P+ ++ KI + + IA
Sbjct: 76 VEVTLAQGLPKGDKLELIIQKATELGVSSVIPV--QMSRSIAKIDEKKAGKKVVRWRKIA 133
Query: 176 NSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAE--------ATPLVTALSSS 227
A R ++ P+ + LV + L A E A P++ L+
Sbjct: 134 KEA-AEQAHRNRVPCISEPVSFTRVQGLVEEYDLVIAAYEEEGKAGNHHALPVL--LNGL 190
Query: 228 RNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
L+I+GPEG F+ +E+ K+ AG +V +GP LR ETA + +LA +
Sbjct: 191 LPGQRILVIIGPEGGFSPEEIEKLERAGVRSVSIGPRILRTETAPLYVLAAV 242
>gi|170751754|ref|YP_001758014.1| hypothetical protein Mrad2831_5384 [Methylobacterium radiotolerans
JCM 2831]
gi|170658276|gb|ACB27331.1| protein of unknown function DUF558 [Methylobacterium radiotolerans
JCM 2831]
Length = 250
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 105/236 (44%), Gaps = 20/236 (8%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
+ G I+ ++ + ++ VLR +D V +FNG+ G + + R G D+ +
Sbjct: 17 LAAGVILPLDRAQANYLLNVLRRGPDDPVLVFNGRHGEWRAHLVQTGRKGADLHVAAQTR 76
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
PQ + ++ F LK R D+L +K E+GA ++ P++T R D L
Sbjct: 77 ---PQTERADLHYLFAPLKSARLDYLAQKAVEMGAGTIRPVITRFTQGDRVNIDR--LRA 131
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSS 227
N A + E P ++ L ++ +L V E P+ +++
Sbjct: 132 NAVEA--AEQCGILAIPECPE-----PERLPAALAGLAPGRL-LVFCDEDAPVRDPVAAL 183
Query: 228 RNESSGL------IIVGPEGDFTEKEVNKIVEAGAT-AVGLGPHRLRVETATIALL 276
R L ++VGPEG F+E+E I+ T A+ LGP LR +TA +A+L
Sbjct: 184 RAAGDPLAPPPLAVLVGPEGGFSEEERALILARPNTVALSLGPRILRADTAAVAVL 239
>gi|398311485|ref|ZP_10514959.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus mojavensis
RO-H-1]
Length = 256
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 102/243 (41%), Gaps = 33/243 (13%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQH 113
+ + G++ H+ V+R++ D++ + + G C L V+ E + ++ +
Sbjct: 19 ISITGEDVHHIVNVMRMNEGDQI-ICCSQDGFEAKC-------ELQSVSKEKVSCLMIEW 70
Query: 114 TQWN------VFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHL-----------QS 156
T N V+ A G KG + +W+++K TELGA + PL + +
Sbjct: 71 TNENRELPIKVYIASGLPKGDKLEWIIQKGTELGAHAFIPLQAARSVVKLDDKKAKKKRE 130
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAE 216
R + Y + ++ Q+L + V N D + +S E
Sbjct: 131 RWTKIAKEAAEQSYRNEVPQVLDIHSFQQLLDKVQN----FDKCVVAYEESSKQ----GE 182
Query: 217 ATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALL 276
+ +SS SS LI+ GPEG TE EV ++ A GLGP LR ETA + L
Sbjct: 183 TSSFSAVVSSLPKGSSLLIVFGPEGGLTEAEVERLTAKNAVPCGLGPRILRTETAPLYAL 242
Query: 277 ATL 279
+ +
Sbjct: 243 SAI 245
>gi|385332667|ref|YP_005886618.1| ribosomal RNA small subunit methyltransferase E [Marinobacter
adhaerens HP15]
gi|311695817|gb|ADP98690.1| ribosomal RNA small subunit methyltransferase E [Marinobacter
adhaerens HP15]
Length = 244
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 104/253 (41%), Gaps = 34/253 (13%)
Query: 44 IPRFFS-----QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
IPR ++ QG ++ + H+ +VLR+ + LFNG G I + +
Sbjct: 3 IPRIYTNSALAQGSTAELDDNAAQHVGRVLRMQAGQELLLFNGDGNDYPATISSASKKNV 62
Query: 99 DV--------VALEDLKLVLPQHTQWNVFAAFGTL-KGGRADWLVEKCTELGAQSVTPLL 149
+V L++VL Q TL KG R D+ V+K E+G + PL
Sbjct: 63 EVQVGTPEANTTESPLEIVLGQ-----------TLSKGDRMDYAVQKAVEMGVTRIVPLT 111
Query: 150 TELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKL 209
TE + GD + ++A G R+ E++ P M + L S+
Sbjct: 112 TE-RCDVKLKGDREDKRLRHWQSVAISAAEQCGRARVPEIL--PVMTVSEWL---EHSRD 165
Query: 210 AFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVE 269
V + AL S +++GPEG + +E+ + G V LGP LR E
Sbjct: 166 CEVRLVLHHRTEHALKSIIPPERVALMIGPEGGLSPEEIAHAEKEGFLPVALGPRVLRTE 225
Query: 270 TATIALLATLMLC 282
TA +A +A LC
Sbjct: 226 TAPVAAMA---LC 235
>gi|404483170|ref|ZP_11018394.1| RsmE family RNA methyltransferase [Clostridiales bacterium OBRC5-5]
gi|404343722|gb|EJZ70082.1| RsmE family RNA methyltransferase [Clostridiales bacterium OBRC5-5]
Length = 245
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 106/232 (45%), Gaps = 15/232 (6%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQ 115
+EG + H+ VLR+ + + L + KG C +I D V L+ L+ + +
Sbjct: 18 IEGSDVNHIVNVLRMKPEEEL-LISVKGDWDYLC--KIVDIETDRVNLKVLESMEQRELP 74
Query: 116 WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNFYYG 172
N+ G K + + +++K ELG + P+ T+ + + +K G + +
Sbjct: 75 VNITLLQGIPKSDKLEMIIQKAVELGVNEIIPVKTKRVVVKIDEKKAG-----AKVSRWN 129
Query: 173 FIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQ--SKLAFVAIAEATPLVTALSSSRNE 230
IA SA + + V P M ID L +V KL A+ + ++
Sbjct: 130 AIAESAAKQSKRSIIPKVYEP-MSIDNALEIVKDFGVKLIPYENADGIDKTRKILDGMDK 188
Query: 231 SSGLII-VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
+ +++ +GPEG F E EV +I +G + LG LR ETA +ALL+ +M+
Sbjct: 189 TKDIVVFIGPEGGFEEAEVERIKNSGFEVITLGKRILRTETAGLALLSNIMI 240
>gi|83746774|ref|ZP_00943822.1| surface protein [Ralstonia solanacearum UW551]
gi|207744320|ref|YP_002260712.1| hypothetical protein RSIPO_02511 [Ralstonia solanacearum IPO1609]
gi|83726543|gb|EAP73673.1| surface protein [Ralstonia solanacearum UW551]
gi|206595725|emb|CAQ62652.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609]
Length = 249
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 108/253 (42%), Gaps = 28/253 (11%)
Query: 43 GIPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTG 97
G+PRF+ + V + H+ VLRL+ D V+LF+G G R
Sbjct: 2 GLPRFYIDSPLAPHTTVTLPESVARHI-HVLRLAVGDDVQLFDGSGLEF--------RAR 52
Query: 98 LDVVALEDLKLVLPQHTQWNVFAAF------GTLKGGRADWLVEKCTELGAQSVTPLLTE 151
LD + D L TQ + A + G G + DWL+EK ELG ++TPL TE
Sbjct: 53 LDAINRRDATASLADATQPDTEARYAITLAQGIAGGDKMDWLIEKAVELGVHAITPLQTE 112
Query: 152 LHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAF 211
+ R G+ + + + G R+ ++P + L S A
Sbjct: 113 RGV-VRLSGERAAKRVQHWQALVQAACEQCGRARVP--AVSPVTTLRDWLTAAKASGRAR 169
Query: 212 VAI----AEATPLVTALSSSRNESSGL-IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRL 266
V + +++ A S R +S+G+ +++GPEG + E + AG + LG L
Sbjct: 170 VMLSPRGSQSLTQWAAQSRERIDSTGIELLIGPEGGLSPDEESLAEAAGYLPLTLGRRIL 229
Query: 267 RVETATIALLATL 279
R E+A + ++ L
Sbjct: 230 RTESAALVAVSAL 242
>gi|218528889|ref|YP_002419705.1| hypothetical protein Mchl_0859 [Methylobacterium extorquens CM4]
gi|218521192|gb|ACK81777.1| protein of unknown function DUF558 [Methylobacterium extorquens
CM4]
Length = 250
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 106/244 (43%), Gaps = 23/244 (9%)
Query: 45 PRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PR F ++G ++ +E + ++ VLR + + V LFNG+ G I R D
Sbjct: 9 PRLFVEADLAEGRVLPLERAQANYLLTVLRRAEGEPVLLFNGRDGEWRAEIVPQGRKSAD 68
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
+ + + PQ ++ F LK GR D++ +K E+GA + P+ T R
Sbjct: 69 LRVVAQTR---PQPAPADLHYLFAPLKTGRIDYMAQKAVEMGAGRLQPVFTRFTQGERIK 125
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA-- 217
D L N A + + E P ++ L + ++L EA
Sbjct: 126 LDR--LQANAIEA--AEQCGILSVPEIGE-----PARLPACLDALEANRLLVFCDEEASV 176
Query: 218 TPLVTALSSSRNESSG---LIIVGPEGDFTEKEVNKIVEAGAT-AVGLGPHRLRVETATI 273
T V AL + + +S ++VGPEG F +E I T A+ LGP LR +TA +
Sbjct: 177 TDPVAALRGAADPASPPPLAVLVGPEGGFHAEERALIAARPNTVALSLGPRILRADTAAV 236
Query: 274 ALLA 277
A+LA
Sbjct: 237 AVLA 240
>gi|189460815|ref|ZP_03009600.1| hypothetical protein BACCOP_01462 [Bacteroides coprocola DSM 17136]
gi|189432389|gb|EDV01374.1| RNA methyltransferase, RsmE family [Bacteroides coprocola DSM
17136]
Length = 232
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 96/242 (39%), Gaps = 49/242 (20%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWN- 117
+E H +VLRL+ D + L +GKG I V E V+PQ W
Sbjct: 18 EEAGHCLRVLRLTVGDEIMLTDGKGCFYRAAISAATGKRCQVKVNE----VIPQEPFWKG 73
Query: 118 --VFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
A T R +W VEK TE+G ++ FL+C F
Sbjct: 74 HLHLAMAPTKNMDRIEWFVEKATEIGFDELS-----------------FLNCRF------ 110
Query: 176 NSAFVYGGQRLHEMVLNP-PMKIDGLLPLVS---------------QSKLAFVAIAEATP 219
+ V +R+ ++V++ + P+V+ Q +A E
Sbjct: 111 SERKVIKTERIEKIVVSAIKQSLKARKPVVNEMVDFGRFMQREFAGQKFIAHCYEGEKPL 170
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
L L + ++++GPEGDF+ +EV K G ++ LG RLR ETA + + T+
Sbjct: 171 LKDVLQPGED---AVVLIGPEGDFSREEVEKAEAMGFRSISLGKSRLRTETAALVAVHTM 227
Query: 280 ML 281
L
Sbjct: 228 NL 229
>gi|408675481|ref|YP_006875229.1| Ribosomal RNA small subunit methyltransferase E [Emticicia
oligotrophica DSM 17448]
gi|387857105|gb|AFK05202.1| Ribosomal RNA small subunit methyltransferase E [Emticicia
oligotrophica DSM 17448]
Length = 230
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 102/232 (43%), Gaps = 23/232 (9%)
Query: 47 FFSQGGIVR---VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVAL 103
F Q IV + ++ H KVLR + D + + +G GGL + I + +V L
Sbjct: 3 LFYQSDIVNNQVLSEEDSRHCIKVLRKNIKDIIHIVDGVGGLYQCEIIKTHEKKCEVRIL 62
Query: 104 EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNG 163
K + ++ A T R ++ +EKC E+G ++ + T+ RK
Sbjct: 63 STQKDFEKRDIYLHIAIA-PTKNADRIEYFLEKCVEIGVDEISLIQTKH--SERKNQKTE 119
Query: 164 FLSCNFYYGFIANSAFVYGGQRLHEMV--LNPPMKIDGLLPLVSQSKLAFVA--IAEATP 219
L IA SA Q L + +N D + ++S F+A +A P
Sbjct: 120 RLE------KIAISAM---KQSLKAYLPKINELQDFDKFIE-NNKSTTKFIAHLTEDAKP 169
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA 271
L ++ ++ L+++GPEGDFT EV+K E G V LG RLR ETA
Sbjct: 170 LKEVVAGKKD---VLVMIGPEGDFTHTEVSKAREKGFQIVTLGNSRLRTETA 218
>gi|296533751|ref|ZP_06896298.1| RsmE family RNA methyltransferase [Roseomonas cervicalis ATCC
49957]
gi|296265927|gb|EFH12005.1| RsmE family RNA methyltransferase [Roseomonas cervicalis ATCC
49957]
Length = 242
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 93/228 (40%), Gaps = 14/228 (6%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ +V+R D V LFNG+ G + RI D V + PQ + ++
Sbjct: 27 YLGQVMRRKEGDPVHLFNGRDG---EWLARIAALRKDRVQFRPESRLRPQQSGPDLRLLL 83
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
+K DW+VEK TELG +S+ P+ T + R N
Sbjct: 84 APVKRDAMDWIVEKATELGVRSIRPVFTARCVIGR---------VNLERLSTIAREAAEQ 134
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
+RL + P+ + L + L P + + + + GL +VGPEG
Sbjct: 135 CERLDVPEIAAPLDLHAALDAWDGAPLLVGDARGKAPSLNVVLAGKAPPLGL-LVGPEGG 193
Query: 243 FTEKEVNKIVEAG-ATAVGLGPHRLRVETATIALLATLMLCSDSQQMP 289
FT++E++ + + LGP LR ETA +A LA L + P
Sbjct: 194 FTDQELDAVRRRPFVSPAALGPRILRAETAAVAGLAVLQALAGDWAAP 241
>gi|168701569|ref|ZP_02733846.1| PAS/PAC sensor signal transduction histidine kinase [Gemmata
obscuriglobus UQM 2246]
Length = 237
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 96/232 (41%), Gaps = 26/232 (11%)
Query: 44 IPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVAL 103
IP G V + G E H+ V R D V +FNG G I + VV L
Sbjct: 7 IPDLLGAGEFV-LTGPEAHHLVAVRRFGDGDEVVVFNGDGNDYPAQILSAGKK--SVVLL 63
Query: 104 EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNG 163
+ + + + V A KG RAD+LVEK TELG PL+T + K+
Sbjct: 64 VREPVFVNRELPFPVVVASALPKGDRADFLVEKLTELGVNRFIPLITTRAVVLPKV---- 119
Query: 164 FLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTA 223
S +G A G+ M ++ P K D +FVA A+ +T
Sbjct: 120 --SVVEKFGRAVIEASKQCGRNCL-MQVDAPQKWD-----------SFVARADLPQPLTI 165
Query: 224 LSSS-----RNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
L + + + G + VGPEG FT +EV + + G A LG LR ET
Sbjct: 166 LHTGPGLVGASGAGGTLAVGPEGGFTTEEVERALTHGFVARSLGSRVLRTET 217
>gi|424836395|ref|ZP_18261044.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium sporogenes PA
3679]
gi|365977089|gb|EHN13192.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium sporogenes PA
3679]
Length = 252
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 104/225 (46%), Gaps = 12/225 (5%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQ 115
++GD+ H+ KVLRL D + + N +G +G I+ ID+ + V LE +K + +
Sbjct: 18 IDGDDVKHIYKVLRLECGDSININNCQGKEYKGKIESIDKKSVVVKILEQVK--VNNESP 75
Query: 116 WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
N++ G K + D +V+K TELG + + P++TE + + L + IA
Sbjct: 76 LNIYLYQGLPKSTKMDLIVQKSTELGIKEIIPIITERVEVKTSLKEFKKLD---RWNRIA 132
Query: 176 NSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI--AEATPLVTALSSSRNESS- 232
A + L V P+K + LL + L V E + + + + + E
Sbjct: 133 LEACKQCKRSLIPSV-REPLKFNDLLEEIKDMDLIIVPYESKENYGIKSLIKNIKYEKEN 191
Query: 233 ---GLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274
II+GPEG F E E+ + E A V LGP R ETA I
Sbjct: 192 IKNIGIIIGPEGGFEESEIRLLEEIKAQIVTLGPRIFRTETAGIV 236
>gi|15806531|ref|NP_295243.1| 16S ribosomal RNA methyltransferase RsmE [Deinococcus radiodurans
R1]
gi|6459283|gb|AAF11086.1|AE001996_1 conserved hypothetical protein [Deinococcus radiodurans R1]
Length = 242
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 104/236 (44%), Gaps = 32/236 (13%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQH 113
+R+ E H+ VLRL +RV++F+G+GG + +D G ++ L+ +
Sbjct: 24 MRLGPQETRHL-HVLRLRPGERVQVFDGRGGEAVAVLSELD-AGHALLHLDPAAAAHSRG 81
Query: 114 TQWN--VFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYY 171
++ V A LKG + +V TELGA + L+T H ++R IG +
Sbjct: 82 AEYPQPVTLAIALLKGDKLADVVRAATELGAARIQLLITA-HAEARDIGAQKLVRLRR-- 138
Query: 172 GFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNES 231
IA A +R+ VL P V +KL + L+TA S+
Sbjct: 139 --IAGEAARQSERRIVPDVLEP----------VPLTKLTWEG-----QLLTAHPGSQERL 181
Query: 232 SGL--------IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
+ L ++ GPEG + EV + GA + LGP LR ETA +ALL +
Sbjct: 182 TDLLTWDAPLTVLSGPEGGLSTAEVEHLTRQGARLITLGPRILRAETAPLALLGAM 237
>gi|205374146|ref|ZP_03226946.1| 16S rRNA m3U1498 methyltransferase [Bacillus coahuilensis m4-4]
Length = 248
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 106/249 (42%), Gaps = 22/249 (8%)
Query: 44 IPRFFSQ---GGIVRVEGDEFWHMTKVLRLSTNDR-VELFNGKGGLIEGC-IQRIDRTGL 98
+ R+F Q VRV+GD+F HM +V+R+ D + +F I C I+ I L
Sbjct: 1 MQRYFLQTDSNERVRVKGDDFHHMIRVMRMKEGDSFLSVFQDNKSAI--CKIEEISNDSL 58
Query: 99 --DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
VV E +P + G KG + + +++K TELGA P +
Sbjct: 59 TASVVEWELNSTEMP----VRITIVSGLPKGDKLESIIQKGTELGATEFIPFKATRSIV- 113
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI-- 214
K D + IA A +R + + P + +L V + + VA
Sbjct: 114 -KWDDKKAHKKIERFEKIAKEAAEQSHRRTIPFI-SEPKTLKQILQTVPSNAVKLVAFEE 171
Query: 215 ----AEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
E++ L +N ++I GPEG TE+EV+++ + GLGP LR ET
Sbjct: 172 EAKQGESSQFKEELQKVQNGDHIMMIFGPEGGLTEEEVHELKNHDFISCGLGPRILRTET 231
Query: 271 ATIALLATL 279
A + LA +
Sbjct: 232 APLYALAAI 240
>gi|89100454|ref|ZP_01173316.1| hypothetical protein B14911_05471 [Bacillus sp. NRRL B-14911]
gi|89084797|gb|EAR63936.1| hypothetical protein B14911_05471 [Bacillus sp. NRRL B-14911]
Length = 248
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 111/251 (44%), Gaps = 26/251 (10%)
Query: 44 IPRFFS---QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGC-IQRI--DRTG 97
+ R+F+ + G + GD+F H+T+V+R+ D + + +GG C I+ I ++
Sbjct: 1 MQRYFTNRDKDGRFIIAGDDFHHITRVMRMKEGDSI-ICAVRGGRSAVCRIEEITDEQVI 59
Query: 98 LDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHL 154
+VV ++ LP A G KG + + +++K TELGA P +
Sbjct: 60 AEVVQWKEASSELP----IKAAIASGLPKGDKLELIIQKGTELGASVFIPFTAARSIVKW 115
Query: 155 QSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI 214
+K G + IA A + L VL P + + L+ L +A
Sbjct: 116 DEKKAGKK-----TERWQKIAKEAAEQSHRDLQPDVLQP-VSMKELIDLGKGYDRKVIAY 169
Query: 215 ------AEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRV 268
E++ + LS S L++ GPEG +EKEV + + G + GLGP LR
Sbjct: 170 EEDAKDGESSAFASLLSGMEKGQSLLMVFGPEGGLSEKEVALLKDNGFLSCGLGPRILRT 229
Query: 269 ETATIALLATL 279
ETA + LA +
Sbjct: 230 ETAPLYALAAV 240
>gi|423302011|ref|ZP_17280034.1| RsmE family RNA methyltransferase [Bacteroides finegoldii
CL09T03C10]
gi|408471102|gb|EKJ89634.1| RsmE family RNA methyltransferase [Bacteroides finegoldii
CL09T03C10]
Length = 232
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 94/236 (39%), Gaps = 37/236 (15%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQW-- 116
+E H +VLRL+ D + L +G+G + I + L +K + Q W
Sbjct: 18 EEAQHCIRVLRLNIGDEITLTDGEGNFYKAEIT----AATNKRCLVAIKETIFQEPLWPC 73
Query: 117 NVFAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
++ A K R +W EK TE+G +T FL+C F +
Sbjct: 74 HLHIAMAPTKNMDRNEWFAEKATEIGFDELT-----------------FLNCRFSERKVI 116
Query: 176 NSAFVYG------GQRLHEMV--LNPPMKIDGLL--PLVSQSKLAFVAIAEATPLVTALS 225
+ + Q L + LN D + Q +A + L L
Sbjct: 117 KTERIKKILISAIKQSLKARLPKLNEMTDFDKFITREFKGQKFIAHCYEGDKPLLKNILK 176
Query: 226 SSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
+ L+++GPEGDF+E+EV K +E G + LG RLR ETA +A L L
Sbjct: 177 PGED---ALVLIGPEGDFSEEEVKKAIEQGFVPISLGKSRLRTETAALAACHILNL 229
>gi|389606637|emb|CCA45549.1| ribosomal RNA small subunit methyltransferase E [Neisseria
meningitidis alpha522]
Length = 241
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 113/247 (45%), Gaps = 24/247 (9%)
Query: 41 RGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV 100
R +P S G V + + H+ VLR+ N+ + LF+GKG + +++ +
Sbjct: 3 RFHLPENLSVGQTVALPDNIVRHLN-VLRVRPNENITLFDGKGKAHAARLTVLEKRRAEA 61
Query: 101 VAL-EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
L ED + N+ G R D+ ++K ELG ++ P+++E + R
Sbjct: 62 EILHED---TTDNESPLNITLIQSISLGDRMDFTLQKSVELGITAIQPIISERCI-VRLD 117
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
G+ + + ++ G + PP +LP++ K +E+T
Sbjct: 118 GERAAKRLARWQEIVISACEQSGRNTV------PP-----VLPIIGYRKALDKMPSESTK 166
Query: 220 LVTALSSS------RNESSGLI-IVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
L+ +++ + R+ S ++ +VGPEG +TE+E + EAG AV LG LR ETA
Sbjct: 167 LIMSINRACKLADIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGFQAVTLGKRILRTETAP 226
Query: 273 IALLATL 279
+A LA +
Sbjct: 227 LAALAAM 233
>gi|418054278|ref|ZP_12692334.1| Ribosomal RNA small subunit methyltransferase E [Hyphomicrobium
denitrificans 1NES1]
gi|353211903|gb|EHB77303.1| Ribosomal RNA small subunit methyltransferase E [Hyphomicrobium
denitrificans 1NES1]
Length = 248
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 104/218 (47%), Gaps = 18/218 (8%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++T VLRL R+ +FNG+ G E + +R ++ +E PQ ++ F
Sbjct: 32 YLTNVLRLRPGARLLVFNGRDGEWEASLLE-NRKRTAILGIE--HRTRPQEQGPDIDYLF 88
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
LK R D++V+K TE+G + + P++TE + R ++ + +A G
Sbjct: 89 APLKRARLDYMVQKATEMGVRRLRPVITERTIAER-------VNTERMVANVIEAAEQCG 141
Query: 183 GQRLHEMVLNPPMKIDGLLP-LVSQSKLAFVAIAE--ATPLVTALSSSRNESSGLIIVGP 239
R+ E + PP+ +D L KL + E A P+ T + +++GP
Sbjct: 142 ILRVPE--VEPPVSLDSALAGWDPARKLIYCDEQETSADPIETLGHVPAGPVA--VLIGP 197
Query: 240 EGDFTEKEVNKIV-EAGATAVGLGPHRLRVETATIALL 276
EG F++ E ++++ ++ + LGP +R +TA +A L
Sbjct: 198 EGGFSDSERSRLLAQSFVVVLSLGPRIMRADTAAVAAL 235
>gi|293384704|ref|ZP_06630559.1| RNA methyltransferase, RsmE family [Enterococcus faecalis R712]
gi|293387404|ref|ZP_06631959.1| RNA methyltransferase, RsmE family [Enterococcus faecalis S613]
gi|312908310|ref|ZP_07767274.1| RNA methyltransferase, RsmE family [Enterococcus faecalis DAPTO
512]
gi|312910616|ref|ZP_07769458.1| RNA methyltransferase, RsmE family [Enterococcus faecalis DAPTO
516]
gi|291078011|gb|EFE15375.1| RNA methyltransferase, RsmE family [Enterococcus faecalis R712]
gi|291083195|gb|EFE20158.1| RNA methyltransferase, RsmE family [Enterococcus faecalis S613]
gi|310625724|gb|EFQ09007.1| RNA methyltransferase, RsmE family [Enterococcus faecalis DAPTO
512]
gi|311289164|gb|EFQ67720.1| RNA methyltransferase, RsmE family [Enterococcus faecalis DAPTO
516]
Length = 245
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 109/247 (44%), Gaps = 29/247 (11%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVEL-FNGKGGLIEGCIQRIDRTGL--DVVALE 104
+ + + +V + + H+ +V+R++ ND L F K ++ ++ ID T + ++ E
Sbjct: 5 YQEKDLYKVADENYHHIVRVMRMTPNDHCYLVFQNKTAILAEIVE-IDSTSVYFKEISKE 63
Query: 105 DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQ------SVTPLLTELHLQSRK 158
++ LP V A G KG + +W+V+K TELG + T ++ H + R
Sbjct: 64 EMDKELP----IEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDH-KKRA 118
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA- 217
+ IA A R ++ K ++ VA E+
Sbjct: 119 AKEKRLQK-------IATEA-AEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESA 170
Query: 218 -----TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
+ L LS+ + + ++ GPEG F +E+ + ++AGA GLGP LR ETA
Sbjct: 171 KQGEKSQLAQVLSTCQPGARLCVLFGPEGGFAPQEIEQFLQAGAKLCGLGPRILRAETAP 230
Query: 273 IALLATL 279
+ LL+ +
Sbjct: 231 LYLLSAV 237
>gi|389807796|ref|ZP_10204308.1| 16S ribosomal RNA methyltransferase RsmE [Rhodanobacter thiooxydans
LCS2]
gi|388443579|gb|EIL99722.1| 16S ribosomal RNA methyltransferase RsmE [Rhodanobacter thiooxydans
LCS2]
Length = 244
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 6/208 (2%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
H+ +VLR++ D + +FNG G I + + L V +E +LV + + A
Sbjct: 27 HVARVLRMNPGDPLTVFNGDGHDYAAIILAMGKRELSV-RIESKQLVR-NESPLPLTLAQ 84
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G +G + D +V+K TELG + PLLTE + + + +A++ G
Sbjct: 85 GVARGEKMDLIVQKATELGVARIVPLLTE-RSEVKLDAARAERRLAHWRAVVASACEQSG 143
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
L E+ P+ L L L + EA L + + GL++VGPEG
Sbjct: 144 RAHLPEVAPALPLAA-WLHDLADDGALRLALLPEAGRASRELRFT--AAGGLLVVGPEGG 200
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVET 270
E++V + AG + LGP LR ET
Sbjct: 201 LGERDVEALGAAGFEGLRLGPRILRTET 228
>gi|149911573|ref|ZP_01900186.1| hypothetical protein PE36_05278 [Moritella sp. PE36]
gi|149805352|gb|EDM65364.1| hypothetical protein PE36_05278 [Moritella sp. PE36]
Length = 243
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 102/242 (42%), Gaps = 17/242 (7%)
Query: 45 PRFFSQGGIV-----RVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PR F G ++ + D H+ +VLR++T D + LFNGKGG + I++ + +
Sbjct: 4 PRIFESGELIVGSSFELSPDGAGHVGRVLRMTTGDTLTLFNGKGGQYQATIEQTTKKSVT 63
Query: 100 VV--ALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
V +D+ P + +G + D+ ++K ELG ++TPL +E
Sbjct: 64 VHIDEFQDINSESP----LKIHLGQAISRGDKMDFTIQKSVELGVTAITPLFSERC--GV 117
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA 217
K+ + I +A G+ VL P D ++ KL A+
Sbjct: 118 KLSGERLEKKIQQWQKIVIAACEQSGRNFVPQVLPPKQLKDWAAEETTELKLNLHPRAKY 177
Query: 218 TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
+ + L ++ +++GPEG + E+N + LGP LR ETA + +
Sbjct: 178 S--INTLPEPKHGVR--LLIGPEGGLSADEINMTEQFNFEETLLGPRVLRTETAALTAIT 233
Query: 278 TL 279
L
Sbjct: 234 AL 235
>gi|194334810|ref|YP_002016670.1| 16S ribosomal RNA methyltransferase RsmE [Prosthecochloris
aestuarii DSM 271]
gi|194312628|gb|ACF47023.1| protein of unknown function DUF558 [Prosthecochloris aestuarii DSM
271]
Length = 245
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 104/232 (44%), Gaps = 28/232 (12%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQ 115
VEG+EF+H+ +VLR + + L +G G I I ID+ L+ ++ + + P T+
Sbjct: 20 VEGEEFFHIVRVLRRTEGQSLHLTDGCGLSINAVIDSIDKGRLN-ASIASFQHIEPPATE 78
Query: 116 WNVFAAFGTLKGG-RADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
V A LK R D+ +EK TELG S+ P++T + S+ G+ + +
Sbjct: 79 VTV--AISLLKSAQRFDFFLEKATELGVTSIIPMVTSRTV-SQPRGEKVQRKVERWKKVL 135
Query: 175 ANSAFVYGGQRLHEM--------VLNPPMKIDG-LLPLVSQSKLAFVAIAEATPLVTALS 225
++ L ++ VL+ D L+P S + VA+A
Sbjct: 136 IAASIQSKRYSLPDICEPRCFGEVLSEGGSYDERLIPYESSCQSPSVALA---------- 185
Query: 226 SSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
L ++G EG F+E EV + ++G T + G LR ETA + +A
Sbjct: 186 ----GRKTLFVIGGEGGFSETEVQQAKDSGFTEISFGSSILRAETAAVFAVA 233
>gi|406896687|gb|EKD40873.1| hypothetical protein ACD_74C00140G0001 [uncultured bacterium]
Length = 263
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 105/241 (43%), Gaps = 39/241 (16%)
Query: 46 RFFSQ-----GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRI--DRTGL 98
RFF G + G E H+ VLRLS D + F+G G + I+RI DR
Sbjct: 5 RFFIDPADITGETALLTGPEAHHLRTVLRLSPGDPITFFDGTGARYQARIERILKDRVTA 64
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE--LHLQS 156
++ LP + ++ A LKG + D +++K TELG ++++P +E +H Q
Sbjct: 65 TIIG---QTRDLPPKVRLHLGQAL--LKGQKMDLILQKATELGVEAISPFYSEHGIHKQP 119
Query: 157 R--------KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLN-PPMKIDGLLPLVSQS 207
R +I C+ A ++ + + +++ PP +
Sbjct: 120 RDTQMDRWQRIVIEACKQCDR-----ATPPEIHDPREVTDLITQLPP----------CDA 164
Query: 208 KLAFVAIAEATPLVTALSS-SRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRL 266
+L F L L+S +++ S L ++GPEG F+E EV + G V LGP L
Sbjct: 165 RLIFWEHETRHTLKDVLASHNKDCRSVLFLLGPEGGFSETEVACAQKEGFIPVSLGPRIL 224
Query: 267 R 267
R
Sbjct: 225 R 225
>gi|384916901|ref|ZP_10017042.1| conserved hypothetical protein [Methylacidiphilum fumariolicum
SolV]
gi|384525693|emb|CCG92915.1| conserved hypothetical protein [Methylacidiphilum fumariolicum
SolV]
Length = 242
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 100/227 (44%), Gaps = 15/227 (6%)
Query: 60 EFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVAL-EDLKLVLPQHTQWNV 118
E H V R D +E+F+G GG E I++I+ + + L E L +P+ + +
Sbjct: 18 ESHHCIHVKRHKIGDVIEVFDGNGGSWEAQIKKIENKKVFLTLLRERPPLFVPKGPRLIL 77
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLL---TELHLQSRKIGDNGFLSCNFYYGFIA 175
+ LK +L++K TE+G + P + T+ + RK + I
Sbjct: 78 IQSI--LKNKAMQFLLQKVTEVGVDQIIPTVSERTQFSKEERKQAKER------KWKDIL 129
Query: 176 NSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS-KLAFVAIAEATPLVTALSSSRNE--SS 232
+A Q+ + D L S S KL EA PL L S E SS
Sbjct: 130 LAAVKQSHQKKLPELSAMTTFTDVLKKEFSFSLKLMAYLGPEAKPLKEILKSHAQEKLSS 189
Query: 233 GLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
+I+VGPEGDFTEKE + G + LG LR ETA + LL+ L
Sbjct: 190 VIILVGPEGDFTEKEKASALSHGFIPINLGNQILRSETAALFLLSIL 236
>gi|365885158|ref|ZP_09424171.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 375]
gi|365286225|emb|CCD96702.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 375]
Length = 248
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 108/241 (44%), Gaps = 29/241 (12%)
Query: 45 PRFFS-----QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PR F +GG V ++ ++ ++ VLRL DRV +FNG+ G + I R L
Sbjct: 9 PRLFVDAPLLEGGAVPLDRNQSNYLGNVLRLGAGDRVLVFNGRDGEWQATIAGRKRADLL 68
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
V + + PQ ++ F LK R D++V+K E+GA + P++T SR
Sbjct: 69 TVQ----QRIRPQDRLPDIAYVFAPLKHARLDYIVQKAVEMGAAVLQPVVTRHTQVSRIN 124
Query: 160 GDN---GFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAE 216
G+ + G ++ +A + P+ ++ L ++L V E
Sbjct: 125 GERMRANVIEAAEQCGILSLAA------------VKDPVPLERFLRERPDARL-LVFCDE 171
Query: 217 ATPLVTALSSSR--NESSGL-IIVGPEGDFTEKEVNKIV-EAGATAVGLGPHRLRVETAT 272
A + + + R E G+ +++GPEG F +E ++ + + LGP LR +TA
Sbjct: 172 AADVADPVQALRGLGEHGGIDLLIGPEGGFAAEERELLLRQPHVVRLALGPRILRADTAG 231
Query: 273 I 273
+
Sbjct: 232 V 232
>gi|390451101|ref|ZP_10236683.1| 16S ribosomal RNA methyltransferase RsmE [Nitratireductor
aquibiodomus RA22]
gi|389661558|gb|EIM73167.1| 16S ribosomal RNA methyltransferase RsmE [Nitratireductor
aquibiodomus RA22]
Length = 245
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 102/224 (45%), Gaps = 18/224 (8%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
+ G + ++ ++T VLR+ V +FNG+ G + T V L
Sbjct: 16 LTAGAELETSREQAHYLTNVLRMREGGEVLVFNGRDGEWHA---EVIETARKAVRLRMTS 72
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
PQ ++ F LK GR D+LV+K E+GA + P++T+ H Q K G L
Sbjct: 73 QARPQTPHPDLLYCFAPLKKGRLDYLVQKAVEMGAGRLQPVITQ-HTQVAKPGTQR-LEA 130
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLP-LVSQSKLAFVAIAEAT--PLVTAL 224
N + +A G + E++ P+K+D LL +L F AT P V AL
Sbjct: 131 N-----VMEAAEQCGILAVPEVL--EPVKLDRLLADWEPDRRLIFCDEDAATNNP-VPAL 182
Query: 225 SSSRNESSGLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLR 267
S+ R + L +VGPEG F+E E ++ T + LGP LR
Sbjct: 183 SAVREKKLAL-LVGPEGGFSEAERAQLRALPFVTPIPLGPRILR 225
>gi|332670855|ref|YP_004453863.1| hypothetical protein Celf_2349 [Cellulomonas fimi ATCC 484]
gi|332339893|gb|AEE46476.1| protein of unknown function DUF558 [Cellulomonas fimi ATCC 484]
Length = 256
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 107/241 (44%), Gaps = 23/241 (9%)
Query: 51 GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL----DVVALE-- 104
GG ++G E H V R +RV++ +G G + G ++ + G+ D V +E
Sbjct: 19 GGTYLLDGTEGRHAGVVQRRGPGERVDVVDGAGVRLVGVVEHVGAEGVHLRVDDVVVEPA 78
Query: 105 -DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNG 163
D+ LVL Q KG R + +E TE+GA +V P + + + G+
Sbjct: 79 PDVALVLVQALA----------KGDRDELAIEAATEVGADAVLPWQADRSIVVWR-GERA 127
Query: 164 FLSCNFYYGFIANSAFVYGGQRLHEM--VLNPPMKIDGLLPLVSQSKLAFVAIAEATPLV 221
S + G + +A R+ E+ ++ + V+ A V EAT V
Sbjct: 128 AKSRARWLGTVRAAAKQARRARVPEVGTAVDSRALAQRVRDAVAAGGGALVLHEEATVPV 187
Query: 222 TALSSSRNESSG---LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
+ G L++VGPEG E E+ ++V+AGA AV LGPH LR TA LA
Sbjct: 188 ADVDLPAAGGPGRECLVVVGPEGGIGEDELARLVDAGAVAVRLGPHVLRTSTAGPVALAI 247
Query: 279 L 279
L
Sbjct: 248 L 248
>gi|222053521|ref|YP_002535883.1| 16S ribosomal RNA methyltransferase RsmE [Geobacter daltonii
FRC-32]
gi|221562810|gb|ACM18782.1| protein of unknown function DUF558 [Geobacter daltonii FRC-32]
Length = 246
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 104/229 (45%), Gaps = 13/229 (5%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVL----P 111
+ G + HM KVLRL V L +G+GG EG I+ ID T L V + L++ P
Sbjct: 18 ITGYLYRHMAKVLRLKQGTAVMLTDGEGGEYEGVIESIDSTSLRVRVVRRETLMVDDGGP 77
Query: 112 QHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYY 171
Q T + G KG + +++++KCTELGA + P + +R + +
Sbjct: 78 QITIYQ-----GLPKGDKLEYILQKCTELGAAGIVPFAASRSI-ARISPQRSAGRVDRWQ 131
Query: 172 GFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS-KLAFVAIAEATPLVTALSSSRNE 230
A +A +R ++ + +L L S KL +A L LS
Sbjct: 132 KIAAEAA--RQSRRATVPRVSLADDLSQVLQLAQHSVKLLLWEEEKANLLRETLSGLSAP 189
Query: 231 SSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
+ +++GPEG F+ +E AG + +G +R ETA++ +L+ L
Sbjct: 190 NDIGVLIGPEGGFSPEEAAAASSAGFIPISMGRRIVRTETASLIILSIL 238
>gi|409124401|ref|ZP_11223796.1| 16S ribosomal RNA methyltransferase RsmE [Gillisia sp. CBA3202]
Length = 236
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 102/239 (42%), Gaps = 35/239 (14%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLI---------EGCIQRIDRTGLDVVALEDLKLV 109
+E H+ KVLR + + + NGKG L + CI ++ + V A E
Sbjct: 21 EESKHIVKVLRKKEGELLHVTNGKGFLFISELTLITPQQCIAKV----IKVEAEEKPSYY 76
Query: 110 LPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNF 169
L A T R +W +EK TE+G +TP+L + H + + + + F
Sbjct: 77 LH-------MAVAPTKMNDRYEWFLEKATEIGVMEITPILCD-HSERKVVKLDRFER--- 125
Query: 170 YYGFIANSAFVYGGQRLHEMV--LNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSS 227
+ SA Q LH + LN P++ + + F+A E +L S
Sbjct: 126 ----VLQSAM---KQSLHFTMPKLNQPVRFSEFVTDTPEGN-KFIAHCEDEIEKKSLQHS 177
Query: 228 RN-ESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSDS 285
+I++GPEGDF+ +E+ ++ V LG RLR ETA I T+ L ++
Sbjct: 178 LELGEKCIILIGPEGDFSSEEITLAIQNNWKPVSLGSTRLRTETAAIVACHTVALFNEE 236
>gi|315222477|ref|ZP_07864375.1| RNA methyltransferase, RsmE family [Streptococcus anginosus F0211]
gi|315188445|gb|EFU22162.1| RNA methyltransferase, RsmE family [Streptococcus anginosus F0211]
Length = 247
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 106/235 (45%), Gaps = 18/235 (7%)
Query: 53 IVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQ 112
I+R + D HM V+RL +D V L + E I+R+ R + +L LP
Sbjct: 15 IIR-DKDTLKHMFSVMRLVEDDEVVL------VFEDGIKRLARVSDRERHVLNLVEELPD 67
Query: 113 HTQW--NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFY 170
+ + +V A G KG + +W+ +K TELGA ++ + + ++ G
Sbjct: 68 NAELPIHVTVASGFPKGDKLEWVAQKATELGATAIWAFPADWSV-AKWDGKKLAKKAEKL 126
Query: 171 YGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI------AEATPLVTAL 224
+ +A R+ E+ L KID L +SQ VA E+ LV A+
Sbjct: 127 EKIVLGAAEQSKRNRVPEVRLFEK-KID-FLDCLSQFDRVIVAYEESAKEGESAALVKAV 184
Query: 225 SSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
+ + S L + GPEG + E+ + EAGA GLGP LR ETA + L+ +
Sbjct: 185 TGLKIGSRILFVFGPEGGLSPAEITTLEEAGAILAGLGPRILRTETAPLYALSAV 239
>gi|259415138|ref|ZP_05739060.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
gi|259349048|gb|EEW60802.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
Length = 246
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 106/234 (45%), Gaps = 21/234 (8%)
Query: 51 GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCI-QRIDRTGLDVVALEDLKLV 109
G V ++ D+ ++ V+RL+ RV LFNG+ G + + + R+G+ + L
Sbjct: 16 GQTVPLDRDQAHYLFGVMRLAVGARVALFNGRDGEWQAEVAEASKRSGVLTCVEQSKPLQ 75
Query: 110 LPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNF 169
LP +++ F +K R D++VEK E+GA + P+ T+ R D
Sbjct: 76 LPP----DLWLIFAPIKKARTDFIVEKAAEMGAARILPVATDFTNSERIRQDR------- 124
Query: 170 YYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSK-LAFVAIAEATP--LVTALSS 226
+A GG + E+ K+ LL + + L F AE + A+ S
Sbjct: 125 LQAHAVEAAEQCGGTYVPEVA--DLQKLSALLDHWPEDRQLMFCDEAEVGQRLFLDAVQS 182
Query: 227 SRNES---SGLIIVGPEGDFTEKEVNKI-VEAGATAVGLGPHRLRVETATIALL 276
+ + S I++GPEG F++ E ++ A V LGP LR +TA +A +
Sbjct: 183 EKPPTASGSWAILIGPEGGFSDAERKRLQAMQQAHVVSLGPRILRADTAAVAAM 236
>gi|402312513|ref|ZP_10831437.1| RNA methyltransferase, RsmE family [Lachnospiraceae bacterium ICM7]
gi|400368971|gb|EJP21974.1| RNA methyltransferase, RsmE family [Lachnospiraceae bacterium ICM7]
Length = 245
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 106/232 (45%), Gaps = 15/232 (6%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQ 115
+EG + H+ VLR+ + + L + +G C +I D V L+ L+ + +
Sbjct: 18 IEGSDVNHIANVLRMKPGEEL-LISVRGDWDYLC--KIVDIETDRVNLKVLESMEQRELP 74
Query: 116 WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
N+ G K + + +++K ELG + P+ T+ + KI + + + IA
Sbjct: 75 VNITLLQGIPKSDKLEMIIQKAVELGVSEIIPVKTKRVVV--KIDEKKVDTKVNRWNAIA 132
Query: 176 NSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFV------AIAEATPLVTALSSSRN 229
SA + + V P M ID L +V + + I + ++ + ++N
Sbjct: 133 ESAAKQSKRSIIPKVYEP-MSIDNALEIVKDFGVKLIPYENADGIDKTRRILDNMDKTKN 191
Query: 230 ESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
+ + +GPEG F E EV +I +G + LG LR ETA +ALL+ +M+
Sbjct: 192 IA---VFIGPEGGFEESEVERIKNSGFEVITLGKRILRTETAGLALLSNIMI 240
>gi|334345701|ref|YP_004554253.1| Ribosomal RNA small subunit methyltransferase E [Sphingobium
chlorophenolicum L-1]
gi|334102323|gb|AEG49747.1| Ribosomal RNA small subunit methyltransferase E [Sphingobium
chlorophenolicum L-1]
Length = 248
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 18/237 (7%)
Query: 47 FFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDL 106
+G V V+G+ ++ V+R+ +D V LF+G+ G + I + L + +
Sbjct: 20 LLGEGVAVPVDGNPAHYLISVMRVKPDDIVLLFDGRSGEWAAKARDIRKRDLVLEVVSQT 79
Query: 107 KLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLS 166
K P++ + + +K GR D + EK ELG + P+LT R + D L+
Sbjct: 80 KA--PENVP-DFWLCCAPIKKGRIDLIAEKACELGVAKLQPVLTR-----RAVVDK--LN 129
Query: 167 CNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAE-ATPLVTALS 225
+ + + +A G L + L+ +K+D L+ + F A PL L
Sbjct: 130 FDRLHAHLVEAAEQCGRTALPD--LSEMVKLDALIRDWPDDRWLFFADETGGEPLADTLK 187
Query: 226 SSRNESSGLIIVGPEGDF--TEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
+ ++ LI GPEG F E+E + V A A V LGP LR ETA IA + M
Sbjct: 188 AHPGPAAFLI--GPEGGFDPAEREAIRGV-AKAVPVSLGPRILRAETAAIAATSAWM 241
>gi|240015737|ref|ZP_04722277.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae FA6140]
Length = 241
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 113/249 (45%), Gaps = 29/249 (11%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRF+ S G V + + H+ VLR+ N+ + LF+GKG + +++
Sbjct: 1 MPRFYLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHTARLTVLEKHRA 59
Query: 99 DVVAL-EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
+ L ED + N+ G R D+ ++K ELG ++ P+++E + R
Sbjct: 60 EAEILHED---TTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCI-VR 115
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA 217
G+ + + ++ G + PP +LP++ + +E
Sbjct: 116 LDGERAAKRLARWQEIVISACEQSGRNTV------PP-----VLPIIGYREALDKMPSEN 164
Query: 218 TPLVTALSSSRN-----ESSGLII--VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
T L+ +++ +R SG I+ VGPEG +TE+E + EAG AV LG LR ET
Sbjct: 165 TRLIMSINRARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGFQAVTLGKRILRTET 224
Query: 271 ATIALLATL 279
A +A +A +
Sbjct: 225 APLAAIAAM 233
>gi|221069844|ref|ZP_03545949.1| protein of unknown function DUF558 [Comamonas testosteroni KF-1]
gi|220714867|gb|EED70235.1| protein of unknown function DUF558 [Comamonas testosteroni KF-1]
Length = 246
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 94/227 (41%), Gaps = 19/227 (8%)
Query: 66 KVLRLSTNDRVELFNGK------GGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVF 119
+VLR D + LF G+ GG + I R+ R+ DV D + V
Sbjct: 27 QVLRHQPGDIITLFEGQTGNGFTGGEFQATITRMGRS--DVGVRVDSHSPAEREAARAVH 84
Query: 120 AAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G R DWLVEK TELG S+ P++ + K GD + IA SA
Sbjct: 85 LVVGMPANERMDWLVEKATELGVASIQPVMAARSVLKLK-GDRADKKIERWQS-IAVSAC 142
Query: 180 VYGGQRLHEMVLNPPMKIDGLL-----PLVSQSKLAFVAIAEATPLVTALSSSRNESSGL 234
G R V++ P+ + L P ++L PL A N +
Sbjct: 143 EQCG-RNQVPVIHAPLSLADWLRSKQAPAADAARLVLSLREGNQPLRIAAG---NAHAVW 198
Query: 235 IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
++ GPEG T +E + +E G LG LR ETA++A L+ L L
Sbjct: 199 VLHGPEGGLTAQEEDWALEQGWKPASLGSRVLRAETASVATLSLLAL 245
>gi|414070245|ref|ZP_11406232.1| 16S rRNA (uracil-N3)-methyltransferase [Pseudoalteromonas sp.
Bsw20308]
gi|410807343|gb|EKS13322.1| 16S rRNA (uracil-N3)-methyltransferase [Pseudoalteromonas sp.
Bsw20308]
Length = 244
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 114/248 (45%), Gaps = 23/248 (9%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+P + + I V ++ D H+ +VLR+ + V +FNG+GG I + + +
Sbjct: 3 VPHIYQKSNIILNTPVSLDEDAAGHVGRVLRMKVGENVSIFNGEGGEYLSEIIEVTKKTV 62
Query: 99 DVVALE----DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHL 154
V+ E D++ L H V +G + D+ ++K ELG +TP+ ++
Sbjct: 63 VVMPYEFNAHDVESPLKIHLGQCVS------RGDKMDFTIQKSVELGITEITPIFSQ-RC 115
Query: 155 QSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS-KLAFVA 213
+ IGD + + IA +A G+ ++NPP+ + L + + KL
Sbjct: 116 GVKLIGDR-LEKKHQQWQKIAIAAAEQSGRNFIP-IINPPIDLKQWLAQQTNAIKLTLHP 173
Query: 214 IAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
AE + + ++ ++ L VGPEG FT+ E+ + + LGP LR ETA +
Sbjct: 174 RAEHS--IKTITVPKDGVRFL--VGPEGGFTDDEMALTKQLDFVDIRLGPRVLRTETAAL 229
Query: 274 ALLATLML 281
+L+ L L
Sbjct: 230 TVLSALQL 237
>gi|118590628|ref|ZP_01548029.1| hypothetical protein SIAM614_05658 [Stappia aggregata IAM 12614]
gi|118436604|gb|EAV43244.1| hypothetical protein SIAM614_05658 [Stappia aggregata IAM 12614]
Length = 252
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 111/241 (46%), Gaps = 20/241 (8%)
Query: 38 NQSRGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTG 97
N R + + G + + + ++ VLRL D V +FNG G + +I G
Sbjct: 7 NMQRLFLRHILADGARIEADRSQANYLLNVLRLKDGDYVLVFNGTDG---EWLAKIVSNG 63
Query: 98 LDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
L+ ++ Q + ++ F LK R D++V+K E+GA S+ P+LT+ H Q+
Sbjct: 64 RRDCTLQLMERTREQTSANDLMYMFAPLKHARLDYMVQKAVEMGAGSLKPVLTQ-HTQAS 122
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS----KLAFVA 213
+I + + +A G + E++ P + +L + +++ +L F
Sbjct: 123 RI------NLERMEANVIEAAEQCGVLAVPEVL--APQPLADVLSVWAEAQPGRRLLFCD 174
Query: 214 IAEAT--PLVTALSSSRNESSGL-IIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLRVE 269
AE T PL++ N L I++GPEG F+E+E + + T + LGP LR +
Sbjct: 175 EAEGTNNPLLSLAQMKENGPQPLAILIGPEGGFSEEERSLLRSLDFVTPIPLGPRILRAD 234
Query: 270 T 270
T
Sbjct: 235 T 235
>gi|429740471|ref|ZP_19274156.1| RNA methyltransferase, RsmE family [Porphyromonas catoniae F0037]
gi|429160907|gb|EKY03351.1| RNA methyltransferase, RsmE family [Porphyromonas catoniae F0037]
Length = 250
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 97/233 (41%), Gaps = 29/233 (12%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWN---VF 119
H K LR S D + + +G+G L E + +DR V + H W+
Sbjct: 25 HAIKALRTSIGDELLVTDGRGMLYETIVTAVDRRHCFVSITREQTW----HKYWSGCWSV 80
Query: 120 AAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAF 179
A T R +W++EK E+G + L T+ H + + I
Sbjct: 81 AIAPTKSVDRIEWMIEKMVEVGVDEIILLRTK-HSERKHINQERL------------ERI 127
Query: 180 VYGGQRLHEMVLNPPMKID-GLLPLVSQSKLAFVAIAE-----ATPLVTALSSSRNESSG 233
V + + L P ++ D L+S++K IA + VT + +
Sbjct: 128 VQSAMKQSQKALLPTLRTDVSFANLLSEAKQPIRLIAHCREGISPERVTIDRAFSPKQDI 187
Query: 234 LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA-TIAL--LATLMLCS 283
LI +GPEGDFT +E+ + + G V LG RLR ETA IAL L TL + S
Sbjct: 188 LIAIGPEGDFTTEELEEAIRTGFVPVTLGESRLRTETAGLIALQWLHTLHMLS 240
>gi|332305394|ref|YP_004433245.1| hypothetical protein Glaag_1016 [Glaciecola sp. 4H-3-7+YE-5]
gi|332172723|gb|AEE21977.1| protein of unknown function DUF558 [Glaciecola sp. 4H-3-7+YE-5]
Length = 242
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 108/245 (44%), Gaps = 21/245 (8%)
Query: 44 IPRFFSQGG-----IVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
I R + G ++ + D H+ VLR V LFNG G G + ID +
Sbjct: 3 ISRIYHPGALHSDQVLELTSDASNHVANVLRSKVGQPVVLFNGDGNEYSG--EFIDVSKR 60
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
V D KL + + ++ G +G R D +++K ELG +TPL+TE K
Sbjct: 61 KVRVQIDAKLSISLESPLSIHLGQGISRGDRMDLVLQKSVELGVTEITPLITE--RCGVK 118
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS----KLAFVAI 214
+ + + + I +A G+ + L+ P + V+QS +L
Sbjct: 119 LDAQRWQKKHAQWQKIIIAACEQCGRNVIP-TLHMPTEFQA---WVNQSTPALRLTLHPR 174
Query: 215 AEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274
AE + TA+ S +++GPEG F+++E+ + + G V LGP LR ETA I
Sbjct: 175 AEKSFRHTAVGS----DGVRLLIGPEGGFSDQELYQTEQGGFHTVQLGPRVLRTETAAIT 230
Query: 275 LLATL 279
++ L
Sbjct: 231 AISAL 235
>gi|350564505|ref|ZP_08933323.1| protein of unknown function DUF558 [Thioalkalimicrobium aerophilum
AL3]
gi|349777983|gb|EGZ32345.1| protein of unknown function DUF558 [Thioalkalimicrobium aerophilum
AL3]
Length = 252
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 108/256 (42%), Gaps = 34/256 (13%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
IPRF+ G ++ ++ D+ + VLRL ++++F+G+G + +Q + R
Sbjct: 3 IPRFYLAANYQPGLVIELDKDQAHYALTVLRLKNGHQIQVFDGQGQQADARLQVMGRRDA 62
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
VV L D + N G +G R D+ ++K ELG ++ P+ TE + R
Sbjct: 63 QVV-LGDSISRPACESPLNTLLVQGISRGERMDYSLQKAVELGVSAIQPVFTE-RCEVRL 120
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRL-----------HEMVLNP----PMKIDGLLPL 203
D + + SA G+ + H NP P GL+ L
Sbjct: 121 DEDKAEKRRQQWQALVI-SACEQSGRCVVPEVKPLITLEHWFAQNPNQPYPKGTRGLV-L 178
Query: 204 VSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGP 263
S F I E L +L+ +++GPEG TE+EV + G + LGP
Sbjct: 179 DPYSTKTFNEI-EKPNLTQSLA---------LLIGPEGGLTEQEVEQAQAQGLQGIRLGP 228
Query: 264 HRLRVETATIALLATL 279
LR ETA +L+ L
Sbjct: 229 RILRTETAAPVILSLL 244
>gi|154686804|ref|YP_001421965.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus
amyloliquefaciens FZB42]
gi|394992057|ref|ZP_10384850.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus sp. 916]
gi|429505952|ref|YP_007187136.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus
amyloliquefaciens subsp. plantarum AS43.3]
gi|154352655|gb|ABS74734.1| YqeU [Bacillus amyloliquefaciens FZB42]
gi|393807073|gb|EJD68399.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus sp. 916]
gi|429487542|gb|AFZ91466.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus
amyloliquefaciens subsp. plantarum AS43.3]
Length = 256
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 100/242 (41%), Gaps = 33/242 (13%)
Query: 55 RVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHT 114
++ G++ H+ V+R+S DR+ + K G C+ L V+ + + + + T
Sbjct: 20 QITGEDVHHIANVMRMSAGDRI-ICCSKDGHEALCL-------LKEVSKDHISCSIAEWT 71
Query: 115 QWN------VFAAFGTLKGGRADWLVEKCTELGAQSVTPL-----------LTELHLQSR 157
N + A G KG + +W+++K TELGA P + R
Sbjct: 72 GENRELPLKIRIASGLPKGDKLEWIIQKGTELGASMFIPFQGARSVVKLDDKKAKKKRER 131
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA 217
+ Y I V+ ++L EM N +D + +S E
Sbjct: 132 WAKIAKEAAEQSYRNEIPEVKTVHTFRQLLEMAEN----VDKCVVAYEESSKQ----GET 183
Query: 218 TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
L S SS LI+ GPEG TE EV+++ E GA GLGP LR ETA + L+
Sbjct: 184 GAFAAELKSLPQGSSLLIVFGPEGGLTESEVHQLSEKGAVLCGLGPRILRTETAPLYALS 243
Query: 278 TL 279
+
Sbjct: 244 AV 245
>gi|358067617|ref|ZP_09154095.1| hypothetical protein HMPREF9333_00976 [Johnsonella ignava ATCC
51276]
gi|356694270|gb|EHI55933.1| hypothetical protein HMPREF9333_00976 [Johnsonella ignava ATCC
51276]
Length = 245
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 105/239 (43%), Gaps = 20/239 (8%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRI--DRTGLDVVALEDLKLVLPQH 113
+EG + H++KVLR+ +++ + G I++I DR L++ + LP
Sbjct: 18 IEGADARHISKVLRMREGEKLIINTGGDWEYLCVIEKIQKDRVYLEIKEENEDVRELP-- 75
Query: 114 TQWNVFAAFGTL-KGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNF 169
N F L K + D++++K ELG + P++T + L ++K L
Sbjct: 76 ---NRIVLFQALPKLDKMDFIIQKAVELGVSEIVPVITNRVVVKLDAKKT-----LQRFE 127
Query: 170 YYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIA---EATPLVTALSS 226
+ IA SA + + V N P+ +L K + L L
Sbjct: 128 RWNAIAKSAAQQSKRNIIPYV-NKPLDFKNVLEYTKDFKHKLIPYELERRKGRLDIFLKK 186
Query: 227 SRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSDS 285
+ + +GPEG F E EV ++AG ++ LG LR ETA +A+L+ +ML D+
Sbjct: 187 ISEDEDIAVFIGPEGGFEESEVEAAIDAGFNSLMLGKRILRTETAGLAVLSAIMLYLDA 245
>gi|421749664|ref|ZP_16187060.1| 16S ribosomal RNA methyltransferase RsmE [Cupriavidus necator
HPC(L)]
gi|409771429|gb|EKN53730.1| 16S ribosomal RNA methyltransferase RsmE [Cupriavidus necator
HPC(L)]
Length = 248
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 98/213 (46%), Gaps = 16/213 (7%)
Query: 66 KVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL--DVVALEDLKLVLPQHTQWNVFAAFG 123
+VLRL + + LF+G+GG + I + V A + + LP + V A G
Sbjct: 28 QVLRLHPGEPITLFDGRGGSHAATLVDIGKRSATAQVGARDAAECELP----FRVTLAQG 83
Query: 124 TLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGG 183
G + DWL+EK ELG ++ PL T + R G+ + + + G
Sbjct: 84 IAGGDKMDWLIEKAVELGVGAIQPLQTARAV-VRLSGERAQKRHAHWQALVTAACEQCGR 142
Query: 184 QRLHEMVLNPPMKIDGLL---PLVSQSKLAFVAIAEATPLVTALSSSRNE--SSGL-IIV 237
RL ++P ++ L P + +L AE+T LV + R+E + G+ +++
Sbjct: 143 NRLP--AVSPVANLESWLAAIPADAGQRLLVSPRAEST-LVALAQAHRDEWIAGGVTLLI 199
Query: 238 GPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
GPEG + +E + G TAV LGP LR ET
Sbjct: 200 GPEGGLSPEEERAALAQGFTAVSLGPRILRTET 232
>gi|325292039|ref|YP_004277903.1| hypothetical protein AGROH133_04165 [Agrobacterium sp. H13-3]
gi|325059892|gb|ADY63583.1| hypothetical protein AGROH133_04165 [Agrobacterium sp. H13-3]
Length = 261
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 100/211 (47%), Gaps = 14/211 (6%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
++F ++ VLR++ + LFNG+ G + + R + ++ LE + PQ + ++
Sbjct: 43 EQFNYLANVLRMTDGAEILLFNGRDGEWKARLSFPSRKKITLIPLEQTR---PQPSASDL 99
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSA 178
F LK GR D+LV+K E+GA + P++T+ H+Q KI + L N A
Sbjct: 100 HYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQ-HVQG-KIHNTEKLRANAIEA--AEQC 155
Query: 179 FVYGGQRLHEMVLNPPMKIDGLLPLVSQS-KLAFVAIAEATPLVTALSSSRNESSGLIIV 237
+ + E P+K+ +L + ++ + +A + S E ++V
Sbjct: 156 GILSLPDVAE-----PVKLKDMLETWPRDRRIIYCDEGDAGQNPLPVLQSIKERKIALLV 210
Query: 238 GPEGDFTEKEVNKIVE-AGATAVGLGPHRLR 267
GPEG F+E+E + A T + LGP LR
Sbjct: 211 GPEGGFSEEERELLRSLAFVTPIPLGPRILR 241
>gi|320529958|ref|ZP_08031034.1| RNA methyltransferase, RsmE family [Selenomonas artemidis F0399]
gi|320137755|gb|EFW29661.1| RNA methyltransferase, RsmE family [Selenomonas artemidis F0399]
Length = 248
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 110/248 (44%), Gaps = 25/248 (10%)
Query: 46 RFFSQGGI---VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVA 102
R F G + +R+ G + H+ +V+R D V + G G R R + VA
Sbjct: 3 RLFYPGELTPEIRITGGDAHHLARVMRAQLGD-VHVVAGADG-------RAARMTVTAVA 54
Query: 103 LEDLKLVLPQHTQWN------VFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
+ + L L + + + V LKG + D++V+K ELGA ++ P++TE H+
Sbjct: 55 RDAVTLRLDSYVEDDAPARAEVILVQALLKGEKTDFIVQKAVELGAAALHPIVTE-HVVV 113
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVS-----QSKLAF 211
R + + IA+ A G RL M + P ID +L V + + F
Sbjct: 114 RY-DAKKAAAKTARWQKIADEAAKQCG-RLSLMHVAPVGAIDSILGDVEIFGGVDTTVIF 171
Query: 212 VAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA 271
E + A+ + + ++IVG EG F+ E ++ AGA V LG LR ETA
Sbjct: 172 CYEGERMQSMRAVLRTVMSARVVLIVGAEGGFSPTEAARLTAAGAQPVSLGHLILRAETA 231
Query: 272 TIALLATL 279
IA L +
Sbjct: 232 AIAALTVV 239
>gi|339053513|ref|ZP_08648209.1| Ribosomal RNA small subunit methyltransferase E [gamma
proteobacterium IMCC2047]
gi|330721278|gb|EGG99366.1| Ribosomal RNA small subunit methyltransferase E [gamma
proteobacterium IMCC2047]
Length = 241
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 107/246 (43%), Gaps = 25/246 (10%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEG--CIQRIDRT 96
IPR F ++ V + + ++ +VLRL + ++ +FNG+GG + C +
Sbjct: 3 IPRIFIDLPLNEHQQVELPRETSHYLNRVLRLPVDAQLRVFNGQGGEYQAQICAANKNAV 62
Query: 97 GLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLL---TELH 153
L + A P H + KG R D++V+K TELG + ++ L TE+
Sbjct: 63 SLAIGAFSAEDNSSPLH----IHLGIALSKGDRMDFVVQKATELGIKEISLLYSERTEVK 118
Query: 154 LQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVA 213
L+ + + L ++ +A SA H ++ P ++ L ++ +
Sbjct: 119 LKGER--EEKRLQ---HWQKVAISACEQCASN-HVPTIHAPTPLNQWLEERHETVKLIMQ 172
Query: 214 IAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
P N ++VGPEG F+E EVN +AG + LGP LR ETA +
Sbjct: 173 PGTDQPF-----KQDNPGKVALLVGPEGGFSESEVNAANQAGFNNLSLGPRILRTETAPL 227
Query: 274 ALLATL 279
++ L
Sbjct: 228 VAISIL 233
>gi|392383105|ref|YP_005032302.1| conserved protein of unknown function [Azospirillum brasilense
Sp245]
gi|356878070|emb|CCC98934.1| conserved protein of unknown function [Azospirillum brasilense
Sp245]
Length = 264
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 99/235 (42%), Gaps = 20/235 (8%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDR--TGLDVVALED 105
+G V ++ + + VLRL D V +FNG+ G I + L V A
Sbjct: 15 LGEGQAVGLDHERAHFLRHVLRLDKGDVVAVFNGRDGEWLAAIDGFGKGWCSLTVTAQRR 74
Query: 106 LKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFL 165
L+ P +++ F +K GR D++ EK +ELG + P+ T +R D
Sbjct: 75 LQAAGP-----DLWLLFAPIKRGRIDFVAEKASELGVSRLWPVFTRRTDPNRVNTDR--- 126
Query: 166 SCNFYYGFIANS-AFVYGGQRLHEMVLNPPMKID-GLLPLVSQSKLAFVAIAEATPLVTA 223
+AN+ +RL + P+ +D L ++ L A A +
Sbjct: 127 -------LLANAIEAAEQSERLTVPEMADPLPLDRALAGWPAERTLYLCAEAGNVRPIAE 179
Query: 224 LSSSRNESSGLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLRVETATIALLA 277
R ++GPEG F + E+++I + VGLGP LR +TA +A LA
Sbjct: 180 AVRGRPRGPAAFLIGPEGGFAQSELDEICKLPFVVPVGLGPRILRADTAVVAALA 234
>gi|187778463|ref|ZP_02994936.1| hypothetical protein CLOSPO_02057 [Clostridium sporogenes ATCC
15579]
gi|187772088|gb|EDU35890.1| RNA methyltransferase, RsmE family [Clostridium sporogenes ATCC
15579]
Length = 255
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 104/225 (46%), Gaps = 12/225 (5%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQ 115
++GD+ H+ KVLRL D + + N +G +G I+ ID+ + V LE +K + +
Sbjct: 21 IDGDDVKHIYKVLRLECGDSININNCQGKEYKGKIESIDKKSVVVKILEQVK--VNNESP 78
Query: 116 WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
N++ G K + D +V+K TELG + + P++TE + + L + IA
Sbjct: 79 LNIYLYQGLPKSTKMDLIVQKSTELGIKEIIPIITERVEIKTSLKEFKKLD---RWNRIA 135
Query: 176 NSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI--AEATPLVTALSSSRNESS- 232
A + L V P+K + LL + L V E + + + + + E
Sbjct: 136 LEACKQCKRSLIPSV-REPLKFNDLLEEIKDMDLIIVPYESKENYGIKSLIKNIQYEKEN 194
Query: 233 ---GLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274
II+GPEG F E E+ + E A V LGP R ETA I
Sbjct: 195 IKNIGIIIGPEGGFEESEIRLLEEIKAQIVTLGPRIFRTETAGIV 239
>gi|289578110|ref|YP_003476737.1| hypothetical protein Thit_0897 [Thermoanaerobacter italicus Ab9]
gi|289527823|gb|ADD02175.1| protein of unknown function DUF558 [Thermoanaerobacter italicus
Ab9]
Length = 245
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 107/231 (46%), Gaps = 16/231 (6%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQ 115
+EG + H+ VLRL D + + +G + I +++ + ++ LE L +T+
Sbjct: 18 IEGKDTHHIINVLRLKKGDEIVISDGSTEY-QTSIYGVEKNRV-ILFLES---KLQSNTE 72
Query: 116 WNVFAAF--GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNF-YYG 172
++ A G K + + +++KCTE+G + P++T + K N L+ +
Sbjct: 73 SSIEIALFQGLPKSDKMELIIQKCTEIGVKKFIPIITRYSVVDIK---NSNLNKKIERWN 129
Query: 173 FIANSAFVYGGQ-RLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT--PLVTALSSSRN 229
I+ A G+ L E+ + P+ L + + L + + L L +N
Sbjct: 130 KISREACKQSGRTSLPEICM--PISFGEALKRIEEFDLCIIPYEKEKTLKLKEVLDGVKN 187
Query: 230 ESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
I VGPEG F+E+EV+ + A V LGP LR ETA I++ + +M
Sbjct: 188 IKKVAIFVGPEGGFSEEEVDLALRYSAKLVSLGPRILRTETAAISVCSIVM 238
>gi|215919303|ref|NP_820935.2| 16S ribosomal RNA methyltransferase RsmE [Coxiella burnetii RSA
493]
gi|206584188|gb|AAO91449.2| hypothetical cytosolic protein [Coxiella burnetii RSA 493]
Length = 260
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 100/235 (42%), Gaps = 16/235 (6%)
Query: 45 PRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE 104
P S V ++ + ++ VLRL ++ LFNG G G I RI + +++
Sbjct: 28 PDQLSVDSTVTLDSRNYHYLLNVLRLREGHKIILFNGDGNNYGGRITRIQKKQVEITI-- 85
Query: 105 DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGF 164
D K + + G + + D+ ++K ELG + PL+TE R
Sbjct: 86 DSKEAGRTESSLFIELGQGISRSEKMDYAIQKAVELGVNRIVPLITE-----RTSTKPKT 140
Query: 165 LSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSK--LAFVAIAEATPLVT 222
+ G + + G ++ + M+ L +SQ + L+ V A +
Sbjct: 141 QKLAHWQGVL-----ISGCEQSGRCCIPELMQAQSLSDWLSQKREGLSLVCHPNAQNSLA 195
Query: 223 ALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
++ + +++GPEG ++ EV + ++G + LGP LR ETAT+ L+
Sbjct: 196 DFKTTSQRIT--LLIGPEGGLSDDEVQRATQSGFQVLFLGPRILRTETATVTALS 248
>gi|297184217|gb|ADI20335.1| uncharacterized protein conserved in bacteria [uncultured alpha
proteobacterium EB080_L27A02]
Length = 243
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 105/227 (46%), Gaps = 29/227 (12%)
Query: 50 QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEG-CIQRIDRTGLDVVALEDLKL 108
+G + + D+ ++ V+RL+ D + +FNGK G + +Q R G+ +V + +
Sbjct: 17 EGQSILLARDQANYLFNVMRLNIGDFISVFNGKDGEWQAEVLQANKRKGIIIVKNQSMPQ 76
Query: 109 VLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCN 168
+LP +V+ F +K R D++VEK TE+G + P+ T+ + S +I + + +
Sbjct: 77 LLPP----DVWLLFAPIKKARTDFIVEKATEMGVSRICPVFTD-YTNSDRIKQSRLQAHS 131
Query: 169 FYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVS-------QSKLAFVAIAEATPLV 221
+V PP +D L L S + L F + V
Sbjct: 132 IEAAEQCGGTYV------------PP--VDELSTLTSVLKSWPKERHLLFCDEHKVGENV 177
Query: 222 TALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLR 267
++ +++++ I++GPEG F++ EV + T++ LGP LR
Sbjct: 178 KSMKATKSDKWA-ILIGPEGGFSDSEVMHLKSLEFVTSISLGPRILR 223
>gi|291515586|emb|CBK64796.1| RNA methyltransferase, RsmE family [Alistipes shahii WAL 8301]
Length = 237
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 97/223 (43%), Gaps = 21/223 (9%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRID----RTGLDVVALEDLKLVLPQHT 114
+E H +VLRL R+ + +G+G L C + D R + VV+ E LP
Sbjct: 19 EESKHCIRVLRLQCGGRIHITDGRGNLF--CCEITDDNPRRCTVRVVSAETGFEKLPYAL 76
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
A T R +W +EK TE+G +V PL TE H + R G
Sbjct: 77 ---TMAVAPTKNSERFEWFLEKATEVGVTAVVPLETE-HSERRVFKPE--------RGEK 124
Query: 175 ANSAFVYGGQRLHEMVLNP--PMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSS-RNES 231
+A + + + VL+P P + L + +A A A++ L+ + R
Sbjct: 125 VVTAALKQSLKAYRPVLHPLTPFREAVLSAPEGRKFIAHCAPAQSPAGKAYLARALRPGE 184
Query: 232 SGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274
+ + +GPEGDF+ E+ + G + LG RLR ETA +A
Sbjct: 185 TATVFIGPEGDFSPGEIAFALANGFEEITLGRQRLRTETAALA 227
>gi|336114421|ref|YP_004569188.1| hypothetical protein BCO26_1743 [Bacillus coagulans 2-6]
gi|335367851|gb|AEH53802.1| protein of unknown function DUF558 [Bacillus coagulans 2-6]
Length = 250
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 97/237 (40%), Gaps = 21/237 (8%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVV-----ALEDLKL 108
+R++G+ + H+ +V+R+S R F G + CI I D V E
Sbjct: 16 IRLDGENYHHIARVMRMSAGSR---FYGVFSDEKVCICEIGEITGDAVMARITGWETAVK 72
Query: 109 VLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCN 168
LP H V + G K + +W+++K TELGA P + E + K
Sbjct: 73 ELPVH----VTVSCGLPKADKLEWIIQKGTELGAFHFLPFIAERSVV--KWDTKKEAKKR 126
Query: 169 FYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP------LVT 222
+ IA A R H ++PP+ L+ + VA E
Sbjct: 127 ERWQKIAREA-AEQSHRSHLPEISPPVSFQQLIEESHTYQYKLVAFEENAKEGERHRFAE 185
Query: 223 ALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
LS+ + L + GPEG + E+ ++ AG + LGP LR ETA + +L+ +
Sbjct: 186 VLSNISEGGNVLAVFGPEGGLSLDEIRRLEAAGFVSCSLGPRILRAETAPLYVLSAI 242
>gi|359792844|ref|ZP_09295638.1| 16S ribosomal RNA methyltransferase RsmE [Mesorhizobium alhagi
CCNWXJ12-2]
gi|359251037|gb|EHK54447.1| 16S ribosomal RNA methyltransferase RsmE [Mesorhizobium alhagi
CCNWXJ12-2]
Length = 244
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 107/238 (44%), Gaps = 19/238 (7%)
Query: 34 SDYANQSRGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRI 93
++Y Q R +P+ ++ ++ ++ +++ VLRL+ + LFNG+ G + RI
Sbjct: 3 ANYKMQ-RLFVPQELAENAVIEASREQSHYLSHVLRLAEGAELLLFNGRDG---EWLARI 58
Query: 94 DRTGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELH 153
+ V L ++ PQ ++ F LK GR D+LV+K E+GA + P++T
Sbjct: 59 EAKAKKSVRLRAVERTRPQPPLPDLVYCFAPLKQGRLDYLVQKAVEMGASVLQPVVT--- 115
Query: 154 LQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLP-LVSQSKLAFV 212
Q +I G A + + E K D LL S+ +L F
Sbjct: 116 -QHTQIARPGIERLRANAVEAAEQCGILAIPEVREA-----QKFDRLLADWDSERRLIFC 169
Query: 213 AIAEAT--PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLR 267
+T PL+ + + E ++VGPEG F++ E ++ TA+ LGP LR
Sbjct: 170 DEDASTNNPLLALQAIT--ERKLALLVGPEGGFSDAERRQLRALPFVTAIPLGPRILR 225
>gi|296110360|ref|YP_003620741.1| hypothetical protein LKI_01145 [Leuconostoc kimchii IMSNU 11154]
gi|339490486|ref|YP_004704991.1| hypothetical protein LGMK_01540 [Leuconostoc sp. C2]
gi|295831891|gb|ADG39772.1| hypothetical protein LKI_01145 [Leuconostoc kimchii IMSNU 11154]
gi|338852158|gb|AEJ30368.1| hypothetical protein LGMK_01540 [Leuconostoc sp. C2]
Length = 247
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 101/238 (42%), Gaps = 23/238 (9%)
Query: 57 EGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK--LVLPQHT 114
+ D F H KVLR + E + ++ G + ID + + + L + LP
Sbjct: 20 DQDIFKHFGKVLRARVGSQAEFVSRTKKVVVGEVIAIDSETMTLAVVSRLNDAVELP--- 76
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCN--FYYG 172
V LK R+DW V+K TELG + + T + SR + D
Sbjct: 77 -IEVTMIVSPLKNDRSDWFVQKATELGVNRI--IFTNM---SRTVADWQKQQSKKGLRLQ 130
Query: 173 FIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT------PLVTALSS 226
IA +A + + MV P + LP K VA E+ LV ++
Sbjct: 131 KIAEAAAEQSHRLMVPMVDFLPWEEVVRLP----KKAGIVAWEESARQGEVATLVKVINQ 186
Query: 227 SRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSD 284
E+ +++GPEG T E+N ++E G A GLGP LR ETA + +L+ + + +
Sbjct: 187 LPKEAHVHVLLGPEGGLTLSEINLLIENGYQAAGLGPRILRAETAPLYVLSAISVLRE 244
>gi|407800110|ref|ZP_11146977.1| hypothetical protein OCGS_2050 [Oceaniovalibus guishaninsula
JLT2003]
gi|407057747|gb|EKE43716.1| hypothetical protein OCGS_2050 [Oceaniovalibus guishaninsula
JLT2003]
Length = 237
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 106/232 (45%), Gaps = 16/232 (6%)
Query: 46 RFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALED 105
R + G VR++ + ++ V+R + D VE+F+ + G + R + + +
Sbjct: 10 RPLAPGQTVRLDPPQAHYLFSVMRRAPGDAVEVFDSRTGTYAAAVAEASRKAVSLTVGDR 69
Query: 106 LKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFL 165
+ P T +++ F +K R D++VEK ELGA + P+ T+ H + +I +
Sbjct: 70 TR---PLRTPPDLWLVFAPIKKARTDFIVEKAAELGACRILPVQTD-HTNADRIRRDRLQ 125
Query: 166 SCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALS 225
+ +A GG + E+ +++ LL + +L F + + AL
Sbjct: 126 AHAI------EAAEQCGGNFVPEVADI--VRLSDLLDGWTDRRLMFCD-ETLSGVFAALP 176
Query: 226 SSRNESSGLIIVGPEGDFTEKEVNKI-VEAGATAVGLGPHRLRVETATIALL 276
R + I++GPEG F++ E ++ + V LGP LR +TA +A L
Sbjct: 177 DERGPWA--ILIGPEGGFSDAERARLRAMPQSHPVSLGPRILRADTAAVAAL 226
>gi|418963990|ref|ZP_13515816.1| RNA methyltransferase, RsmE family [Streptococcus anginosus subsp.
whileyi CCUG 39159]
gi|383342161|gb|EID20395.1| RNA methyltransferase, RsmE family [Streptococcus anginosus subsp.
whileyi CCUG 39159]
Length = 246
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 110/240 (45%), Gaps = 18/240 (7%)
Query: 53 IVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQ 112
I+R + D HM V+RL +D V L + E I+R+ R + +L LP
Sbjct: 15 IIR-DKDTLKHMFSVMRLVEDDEVVL------VFEDGIKRLARVADRECHVLNLVEDLPD 67
Query: 113 HTQW--NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFY 170
+ + +V A G KG + +W+ +K TELGA ++ ++ + ++ G +
Sbjct: 68 NAELPIHVTVASGFPKGDKLEWVAQKTTELGAAAIWAFPSDWSV-AKWDGKKLAKKADKL 126
Query: 171 YGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI------AEATPLVTAL 224
+ +A + E+ L KID L +SQ VA E+ LV A+
Sbjct: 127 EKVVLGAAEQSKRNWVPEVRLFEK-KID-FLDCLSQFDRVIVAYEESAKEGESAALVKAV 184
Query: 225 SSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSD 284
+ + S L + GPEG + E+ + EAGA GLGP LR ETA + L+ + + ++
Sbjct: 185 TELKKGSRILFVFGPEGGLSPAEITTLEEAGAILAGLGPRILRTETAPLYALSAVSVLTE 244
>gi|374310130|ref|YP_005056560.1| Ribosomal RNA small subunit methyltransferase E [Granulicella
mallensis MP5ACTX8]
gi|358752140|gb|AEU35530.1| Ribosomal RNA small subunit methyltransferase E [Granulicella
mallensis MP5ACTX8]
Length = 235
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 102/236 (43%), Gaps = 33/236 (13%)
Query: 58 GDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWN 117
GD+ H+ +VLR ++F+ + G + R + + ++ D ++V H +
Sbjct: 20 GDQAAHLARVLRAEPG---QIFDV---VANGFLHRAE-----ITSVSDSEVVFTLHEELE 68
Query: 118 VFAAF------GTLKGGRADWLVEKCTELGAQSVTPLL---TELHLQSRKIGDNGFLSCN 168
AA K +W +EK TELGA+ +TP+L TE HL
Sbjct: 69 ADAALPVHLLLAVFKFDHMEWGIEKATELGAERITPVLARRTEKHL-----SQAAAKRVE 123
Query: 169 FYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVS-QSKLAFVAIAEATPLVTALSSS 227
+ + +A +R ++ P + L VS ++KL + + AL +
Sbjct: 124 RWRRIVREAA--QQSRRSDVPTVDDPQTLKAALQSVSAETKLLLAETEQENTIAAALQQA 181
Query: 228 RNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCS 283
S + VGPEG +T +E+ E G V LGP LR ETA IA LA +CS
Sbjct: 182 SQ--SVALAVGPEGGWTPEEMQLFTEHGWKHVTLGPRILRAETAAIAGLA---ICS 232
>gi|385652786|ref|ZP_10047339.1| 16S ribosomal RNA methyltransferase RsmE [Leucobacter
chromiiresistens JG 31]
Length = 258
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 101/240 (42%), Gaps = 11/240 (4%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
+ G +V + G+E H +V RL +R+ + NG G L EG + +++ V D +
Sbjct: 15 LAPGSLVEIGGEEGRHAVRVSRLRVGERILIGNGAGALGEGVVDAVEKDRCTVRI--DRE 72
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
+ P V KG R + VE+ TE GA ++ P + SR G G
Sbjct: 73 VSRPAPPGPRVVLVQALAKGDRDERAVEQATEFGADAIVPWQAARSV-SRWDGAGGEEKT 131
Query: 168 NFYYGFIANSAFVYGGQRLHEMV--LNPPMKIDGLLPLVSQSKLAFVAI-----AEATPL 220
A Q L V + P +D L + + A + + A +
Sbjct: 132 AKGLAKWRRIAREASKQSLRAAVPEIREPTTLDALCGIAACEDRAVIVLHPRGAARLSEW 191
Query: 221 VTALSSSRNE-SSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
++S +E +++VGPEG F + E++ + AGA + LG LR +A A +A L
Sbjct: 192 ARTAAASTDELQEAVLVVGPEGGFADAELDALEAAGAAVLLLGDTVLRTSSAGPAAIAVL 251
>gi|257095553|ref|YP_003169194.1| 16S ribosomal RNA methyltransferase RsmE [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257048077|gb|ACV37265.1| protein of unknown function DUF558 [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 254
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 90/228 (39%), Gaps = 26/228 (11%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
H KVLRL D V LF G GG I I+R + V L+ L + + ++
Sbjct: 28 HAVKVLRLRRGDAVTLFTGAGGEYSARIAGIERLRVSVEILQWLPT--ERESPLSITLVQ 85
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G + D V+K ELG P+++ + R + G +A S G
Sbjct: 86 ALQAGDKMDMTVQKAVELGVDRFVPVISRRSV-VRLADQRALRRAEHWRGVVAASCEQCG 144
Query: 183 GQRLHEMVLN-----------PPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNES 231
RL E+ + PP + LL V+ LA LS +
Sbjct: 145 RNRLPEVAIPESLEHWLMRPPPPGVLRLLLAPVASYSLAM------------LSGPSADG 192
Query: 232 SGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
++VG EG +EV AG +V LGP LR ETA +A LA +
Sbjct: 193 HIELLVGAEGGLAPEEVRLAALAGFLSVRLGPRILRTETAGLAALAAI 240
>gi|161831038|ref|YP_001597773.1| 16S ribosomal RNA methyltransferase RsmE [Coxiella burnetii RSA
331]
gi|212211957|ref|YP_002302893.1| 16S ribosomal RNA methyltransferase RsmE [Coxiella burnetii
CbuG_Q212]
gi|161762905|gb|ABX78547.1| conserved hypothetical protein [Coxiella burnetii RSA 331]
gi|212010367|gb|ACJ17748.1| hypothetical cytosolic protein [Coxiella burnetii CbuG_Q212]
Length = 244
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 100/235 (42%), Gaps = 16/235 (6%)
Query: 45 PRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE 104
P S V ++ + ++ VLRL ++ LFNG G G I RI + +++
Sbjct: 12 PDQLSVDSTVTLDSRNYHYLLNVLRLREGHKIILFNGDGNNYGGRITRIQKKQVEITI-- 69
Query: 105 DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGF 164
D K + + G + + D+ ++K ELG + PL+TE R
Sbjct: 70 DSKEAGRTESSLFIELGQGISRSEKMDYAIQKAVELGVNRIVPLITE-----RTSTKPKT 124
Query: 165 LSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSK--LAFVAIAEATPLVT 222
+ G + + G ++ + M+ L +SQ + L+ V A +
Sbjct: 125 QKLAHWQGVL-----ISGCEQSGRCCIPELMQAQSLSDWLSQKREGLSLVCHPNAQNSLA 179
Query: 223 ALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
++ + +++GPEG ++ EV + ++G + LGP LR ETAT+ L+
Sbjct: 180 DFKTTSQRIT--LLIGPEGGLSDDEVQRATQSGFQVLFLGPRILRTETATVTALS 232
>gi|218262623|ref|ZP_03477011.1| hypothetical protein PRABACTJOHN_02690 [Parabacteroides johnsonii
DSM 18315]
gi|423342010|ref|ZP_17319725.1| RsmE family RNA methyltransferase [Parabacteroides johnsonii
CL02T12C29]
gi|423344719|ref|ZP_17322408.1| RsmE family RNA methyltransferase [Parabacteroides merdae
CL03T12C32]
gi|218223272|gb|EEC95922.1| hypothetical protein PRABACTJOHN_02690 [Parabacteroides johnsonii
DSM 18315]
gi|409219417|gb|EKN12379.1| RsmE family RNA methyltransferase [Parabacteroides johnsonii
CL02T12C29]
gi|409224310|gb|EKN17243.1| RsmE family RNA methyltransferase [Parabacteroides merdae
CL03T12C32]
Length = 232
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 95/238 (39%), Gaps = 45/238 (18%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
+E H +VLRL+ D + L +GKG + I R +V LE + Q WN
Sbjct: 18 EEAGHCIRVLRLTEGDEILLTDGKGSFFKAAISRAHPKHCEVNILEQWE----QPALWNF 73
Query: 119 ---FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
A T R +W EK TE+G ++T L+C F
Sbjct: 74 NLHIAVAPTKNMDRMEWFAEKATEIGINAIT-----------------CLNCRFSERKEI 116
Query: 176 NSAFVYGGQRLHEMVLNPPMK---------IDGLLPLVSQSKLAFVA---IAEATPLVTA 223
A RL E +L MK ++G+ + L F IA V
Sbjct: 117 KPA------RL-EKILVSAMKQSQKATLPELNGMTDFRTFVSLPFAGRKFIAHCEEGVKP 169
Query: 224 L--SSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
L + + L+++GPEGDF+ +E+ ++ G + LG RLR ETA + T+
Sbjct: 170 LLKQTYHPGENALVLIGPEGDFSPEEIALALKCGFEPISLGESRLRTETAALVACHTI 227
>gi|157844011|gb|ABV84512.1| hypothetical protein RMA_0218 [Rickettsia massiliae MTU5]
Length = 283
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 108/269 (40%), Gaps = 13/269 (4%)
Query: 14 QFLNRPSLKPLSLRAFSSSSSDYANQSRGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTN 73
+FL+ +S+ F S+ Y +R I ++ + + D ++ VLRL N
Sbjct: 18 KFLSISWFGKMSIIFFIVHSTKYMKYNRIYINSRLAENSKIELASDHVHYVKTVLRLKVN 77
Query: 74 DRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWL 133
D + LFNG G I I + L V E LK +T+ + A +K +
Sbjct: 78 DGLRLFNGTDGEFLAQINDIGKNNLSVRLKEQLK---KPYTESTLTLAVAIIKQDKLMLA 134
Query: 134 VEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNP 193
+ T+LG + PL+T Q R + C +RL ++
Sbjct: 135 INMATQLGITKIIPLITR-RCQFRSVNIERLTKCVI--------EATEQSERLTPPIIEK 185
Query: 194 PMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVE 253
+ I L + L + + +SSS + S IIVGPEG FT E+ +
Sbjct: 186 AITIQDYLKKNNNLMLYANEHEKEDNSILRISSSLSNSDITIIVGPEGGFTNDELELLAS 245
Query: 254 AGAT-AVGLGPHRLRVETATIALLATLML 281
T ++ LG + LR ETA I + + L
Sbjct: 246 YKNTKSISLGRNILRAETAAITAIVQVRL 274
>gi|452946645|gb|EME52142.1| ribosomal RNA small subunit methyltransferase E [Amycolatopsis
decaplanina DSM 44594]
Length = 250
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 94/226 (41%), Gaps = 17/226 (7%)
Query: 52 GIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLP 111
G ++G+E H V RL +R+ L +G+GG+ C+ + G D L L +
Sbjct: 18 GRTTLDGEEARHAATVRRLRVGERLVLSDGEGGMAR-CVVEAVQAGRDAA----LTLAIE 72
Query: 112 QHTQWN-------VFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGF 164
+H W V A KG R + VE TE GA ++ P + + G G
Sbjct: 73 EH--WTEEPPALRVIVAQALAKGDRGELAVELATEAGADAIVPWRAARSVARWEEGTRGD 130
Query: 165 LSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTAL 224
+ + +A + E+ P L L A V + T +T +
Sbjct: 131 KALTRWRTTARAAAKQARRAHIPEVA--EPATTRELAELAQTVSRALVLESGITTRLTEI 188
Query: 225 SSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
+ L++VGPEG T+ E+ + +AGATA+ LGP LR T
Sbjct: 189 ELP-AQGDILLVVGPEGGITDDELTTLTDAGATAIRLGPTVLRTST 233
>gi|269127458|ref|YP_003300828.1| hypothetical protein Tcur_3251 [Thermomonospora curvata DSM 43183]
gi|268312416|gb|ACY98790.1| protein of unknown function DUF558 [Thermomonospora curvata DSM
43183]
Length = 244
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 92/227 (40%), Gaps = 6/227 (2%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQH 113
V +EG E H V RL +RV+L +G G L E + + G D + LE L Q
Sbjct: 18 VVLEGPEGRHAVTVRRLRPGERVDLTDGDGLLAECVVAAV--AGKDRLVLEVLARHRHQP 75
Query: 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGF 173
+ KG R + VE TE G + P +R D + +
Sbjct: 76 PSPRLVVVQALPKGERGELAVETMTEAGVDEIVPW-QAARCVTRWRPDRMDKALGRWRTT 134
Query: 174 IANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSG 233
+A RL ++ PP+ + + + EA + +E
Sbjct: 135 AREAAKQSRRSRLPQI---PPLATTEQVAARLAGAARAIVLHEAATVPLRAVDLPSEGEI 191
Query: 234 LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
+ +VGPEG T++E+ EAGA AV LGP LR TA +A A L+
Sbjct: 192 IAVVGPEGGITDEELACFAEAGAVAVRLGPTVLRTSTAGVAAAAILL 238
>gi|310643066|ref|YP_003947824.1| hypothetical protein [Paenibacillus polymyxa SC2]
gi|309248016|gb|ADO57583.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
gi|392303869|emb|CCI70232.1| Ribosomal RNA small subunit methyltransferase E [Paenibacillus
polymyxa M1]
Length = 254
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 108/239 (45%), Gaps = 21/239 (8%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQH 113
V V G++ H+ KV+R + D++ + +G + I++ + +E L++ +
Sbjct: 16 VIVTGEDARHIAKVMRGRSGDKIIVSDGVSREALAALDTIEQDHVKATIIEPLEMTSEPY 75
Query: 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNFY 170
Q + + KG + + +++KCTE+GA P L+E + ++K G +
Sbjct: 76 VQITIAQSLP--KGDKMETVMQKCTEIGATGFVPFLSERTVVQYDAKKEGKR----LERW 129
Query: 171 YGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT---------PLV 221
+ +A R+ E ++ P+ LL + L + P
Sbjct: 130 RKIVKEAAEQSHRNRIPE--VSAPLTWKELLASFAGYDLICYCYEKEQGRQLRDVIQPFA 187
Query: 222 TALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
+S+ ++ L++VGPEG FTE E + +AGA + GLG LR ETA + LA ++
Sbjct: 188 GHWAST-DKPRVLVVVGPEGGFTEAESLEAEQAGAQSTGLGRRILRAETAGMVALACIL 245
>gi|410647858|ref|ZP_11358275.1| 16S rRNA (uracil1498-N3)-methyltransferase [Glaciecola agarilytica
NO2]
gi|410132507|dbj|GAC06674.1| 16S rRNA (uracil1498-N3)-methyltransferase [Glaciecola agarilytica
NO2]
Length = 242
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 108/245 (44%), Gaps = 21/245 (8%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
I R + G + + + D H+ VLR V LFNG G G + ID +
Sbjct: 3 ISRIYHPGALHSDQELELTSDASNHVANVLRSKVGQPVVLFNGDGNEYSG--EFIDVSKR 60
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
V D KL + + ++ G +G R D +++K ELG +TPL+TE K
Sbjct: 61 KVRVQIDAKLSISLESPLSIHLGQGISRGDRMDLVLQKSVELGVTEITPLITE--RCGVK 118
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS----KLAFVAI 214
+ + + + I +A G+ + L+ P + V+QS +L
Sbjct: 119 LDAQRWQKKHAQWQKIIIAACEQCGRNVIP-TLHMPTEFQA---WVNQSTPALRLTLHPR 174
Query: 215 AEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274
AE + TA+ S +++GPEG F+++E+ + + G V LGP LR ETA I
Sbjct: 175 AEKSFRHTAVGS----DGVRLLIGPEGGFSDQELYQTEQGGFHTVQLGPRVLRTETAAIT 230
Query: 275 LLATL 279
++ L
Sbjct: 231 AISAL 235
>gi|253998192|ref|YP_003050255.1| hypothetical protein Msip34_0480 [Methylovorus glucosetrophus
SIP3-4]
gi|253984871|gb|ACT49728.1| protein of unknown function DUF558 [Methylovorus glucosetrophus
SIP3-4]
Length = 243
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 99/242 (40%), Gaps = 34/242 (14%)
Query: 45 PRFFSQ-----GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PRFFS + + H KVLRL D + LFNG G I+ I + +
Sbjct: 4 PRFFSDVPLTSNSSITLPATAANHAIKVLRLQVGDTLRLFNGDGHDYSAEIETIRKN--E 61
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
V+ + + ++ + A G G R D+ ++K ELG ++ P+ + + K+
Sbjct: 62 VIVKTGQAVAVSNESRLKITLAQGISAGDRMDFTIQKSVELGIHAIQPISCQRSVV--KL 119
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
+ ++ +A SA G+ LP V Q+ ++ A P
Sbjct: 120 SGDRADKRREHWQNVAISACEQSGR--------------AFLPEVGQATSLAKWLSSAPP 165
Query: 220 LVT-----ALSSSRNESSGL------IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRV 268
T L+S+R + + +++GPEG T +E+ G T V LGP LR
Sbjct: 166 FATRITLDPLASTRLQDLPIPQGPICLLIGPEGGLTSEEIAMAASQGFTGVQLGPRILRT 225
Query: 269 ET 270
ET
Sbjct: 226 ET 227
>gi|254510112|ref|ZP_05122179.1| surface protein [Rhodobacteraceae bacterium KLH11]
gi|221533823|gb|EEE36811.1| surface protein [Rhodobacteraceae bacterium KLH11]
Length = 229
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 100/221 (45%), Gaps = 17/221 (7%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGG-LIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWN 117
D+ ++ V+RLS RV LFNG+ G + + R G+ + L LP +
Sbjct: 12 DQAHYLFGVMRLSVGARVALFNGQDGEWLSEVAEAGKRGGVLGCIAQTKPLQLPP----D 67
Query: 118 VFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANS 177
++ F +K R D++VEK E+GA + P+ TE R D +
Sbjct: 68 LWLLFAPIKKARTDFIVEKAAEMGAARILPVQTEFTNSDRIRQDR-------LQAHAVEA 120
Query: 178 AFVYGGQRLHEMVLNPPMKIDGLLPLVSQSK-LAFVAIAEATPLVTALSSSRNESSGLII 236
A GG + E+ ++D +L +++ L F AE + +N+ I+
Sbjct: 121 AEQCGGTFVPEVA--ELQRLDRVLDAWPETRQLMFCDEAEVGSALRLAKQEQNQPWA-IL 177
Query: 237 VGPEGDFTEKEVNKIVE-AGATAVGLGPHRLRVETATIALL 276
+GPEG F++KE ++ + V LGP LR +TA +A +
Sbjct: 178 IGPEGGFSDKERKRLAALPYSHTVSLGPRILRADTAVVAAM 218
>gi|407776846|ref|ZP_11124118.1| 16S ribosomal RNA methyltransferase RsmE [Nitratireductor pacificus
pht-3B]
gi|407301542|gb|EKF20662.1| 16S ribosomal RNA methyltransferase RsmE [Nitratireductor pacificus
pht-3B]
Length = 245
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 99/228 (43%), Gaps = 26/228 (11%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
+ +V ++ ++T VLR+ V LFNG+ G + G V L +
Sbjct: 16 LAADAMVETSREQAHYLTHVLRMREGAEVLLFNGRDG---EWYAELAEAGRKSVRLRVTR 72
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIG----DNG 163
PQ ++ F LK GR D+LV+K E+GA + P++T+ H Q K +
Sbjct: 73 QARPQTPVPDLLYCFAPLKKGRLDYLVQKAVEMGAGCLQPVITQ-HTQVAKAATARLEAN 131
Query: 164 FLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLP-LVSQSKLAFVAIAEAT--PL 220
+ G +A A + P+++D LL +L F AT P+
Sbjct: 132 VMEAAEQCGILAIPA------------VREPVRLDSLLEGWEPDRRLIFCDEDAATNNPM 179
Query: 221 VTALSSSRNESSGLIIVGPEGDFTEKEVNKI-VEAGATAVGLGPHRLR 267
ALS + GL +VGPEG F++ E ++ TA+ LGP LR
Sbjct: 180 -QALSGIKERKIGL-LVGPEGGFSDAERAQLRARPFVTAIPLGPRILR 225
>gi|149375982|ref|ZP_01893748.1| hypothetical protein MDG893_03350 [Marinobacter algicola DG893]
gi|149359619|gb|EDM48077.1| hypothetical protein MDG893_03350 [Marinobacter algicola DG893]
Length = 244
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 99/246 (40%), Gaps = 20/246 (8%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
IPR + S+G ++ + H+ +VLR+ + LFNG G I + +
Sbjct: 3 IPRIYTDSPLSEGATAGLDDNAAQHVGRVLRMQPGQELLLFNGDGNDYPATITEAGKKHV 62
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTL--KGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
V ++ T+ ++ G KG R D+ V+K E+G + PL TE
Sbjct: 63 SV----EVGTPSANATESHLEIVLGQTLSKGDRMDYAVQKAVEMGVTRIVPLTTE-RCDV 117
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAE 216
+ GD + ++A G R+ E+V P M + L V
Sbjct: 118 KLKGDREDKRLRHWQSVAISAAEQCGRARVPEIV--PVMTLSEWFENSGDCDLRLVLHHR 175
Query: 217 ATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALL 276
+ L+ + +++GPEG + E+ AG V LGP LR ETA +A +
Sbjct: 176 TEQSLNTLAKPTRVA---LMIGPEGGLSPDEITAAANAGFLPVALGPRVLRTETAPVAAM 232
Query: 277 ATLMLC 282
A LC
Sbjct: 233 A---LC 235
>gi|150395613|ref|YP_001326080.1| 16S ribosomal RNA methyltransferase RsmE [Sinorhizobium medicae
WSM419]
gi|150027128|gb|ABR59245.1| protein of unknown function DUF558 [Sinorhizobium medicae WSM419]
Length = 245
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 100/215 (46%), Gaps = 22/215 (10%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
++F ++ VLRL + +FNG+ G I R +VA+E + PQ ++
Sbjct: 27 EQFNYLINVLRLGEGSSLLVFNGRDGEWRAEISMPSRKQAVLVAVEQTR---PQPAPCDL 83
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSA 178
F LK GR D+LV+K E+GA + P++T+ H+Q KIG + N A
Sbjct: 84 VYLFAPLKTGRLDYLVQKAVEMGAGVLQPVITQ-HVQG-KIGSLERIRANAIEA--AEQC 139
Query: 179 FVYGGQRLHEMVLNPPMKIDGLLPLVSQS-KLAFVAIAEAT----PLVTALSSSRNESSG 233
V G + E P +++ LL + ++ F + P++ L+ R
Sbjct: 140 GVLGIPAVEE-----PRRLEDLLAAWPRDRRIVFCDEGNESQNPLPILNELAEHRLA--- 191
Query: 234 LIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLR 267
+++GPEG F+E E + + TA+ LGP LR
Sbjct: 192 -LLIGPEGGFSETERDLLRSLDFVTAIPLGPRILR 225
>gi|83859513|ref|ZP_00953034.1| hypothetical protein OA2633_13950 [Oceanicaulis sp. HTCC2633]
gi|83852960|gb|EAP90813.1| hypothetical protein OA2633_13950 [Oceanicaulis alexandrii
HTCC2633]
Length = 254
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 107/255 (41%), Gaps = 36/255 (14%)
Query: 45 PRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDR--TG 97
PR + G ++ ++ D+ ++ V+R D V LFNG+ G + DR
Sbjct: 5 PRLYIDAPLEAGAVLDLDRDQAHYLVNVMRRKPGDGVRLFNGRDGEWRAEVASADRKRAS 64
Query: 98 LDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
L +V + P ++ F +K R D++VEK TELG S+TP++T+ QS
Sbjct: 65 LQIVQQRRSQSATP-----DMALYFAPVKKARTDFIVEKATELGVASITPVITQ-RTQSE 118
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI--- 214
++ + + +RL V++ P+ + +L +++ A
Sbjct: 119 RVRTDRMQAL--------TREASEQTERLDLPVIHEPVSLTQMLKGWDEARTLMFADESG 170
Query: 215 -----------AEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKI-VEAGATAVGLG 262
A P+ AL+ ++VGPEG F+ +E + + V LG
Sbjct: 171 DSQTEPWGGEHGRARPMAEALAGRERGGKWAMLVGPEGGFSVEERTLLHAQTFVLPVSLG 230
Query: 263 PHRLRVETATIALLA 277
P LR +TA A L+
Sbjct: 231 PRILRADTAAAAALS 245
>gi|336392926|ref|ZP_08574325.1| 16S ribosomal RNA methyltransferase RsmE [Lactobacillus
coryniformis subsp. torquens KCTC 3535]
Length = 252
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 104/249 (41%), Gaps = 41/249 (16%)
Query: 51 GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVL 110
GG V + G+ H+ +V+R D++E+ G I+ + G+ V L D L
Sbjct: 13 GGQVTITGESARHIQRVMRAQVGDQLEVVTGDRRAYRSKIEALQPDGVSV-RLADTALTS 71
Query: 111 PQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFY 170
P+ V A K +ADW+V+K TELGA +GF+ +
Sbjct: 72 PELPN-QVIIACSIAKKDKADWIVQKGTELGA-------------------SGFIFFSSQ 111
Query: 171 YGFIANSAFVYGGQ--RLHEMVLN----------PPMKI-DGLLPLVSQSK----LAFVA 213
YG + RL ++ L P + I GL L +K +A+
Sbjct: 112 YGVAKWEPARQAKKLTRLRKIALEAARQSHRDQIPTVDIMAGLTELTQVTKDFGIVAYEE 171
Query: 214 IAEATPLVTALSSSRNESSG---LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
+A+ +++++ G + + GPEG EV ++ +A GLGP LR ET
Sbjct: 172 LAKQGETAALVATAQQLVGGQTLIAVFGPEGGLAPTEVEQLRQADFNVAGLGPRILRAET 231
Query: 271 ATIALLATL 279
A + LL+ L
Sbjct: 232 APLYLLSAL 240
>gi|395761080|ref|ZP_10441749.1| 16S ribosomal RNA methyltransferase RsmE [Janthinobacterium lividum
PAMC 25724]
Length = 241
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 106/244 (43%), Gaps = 18/244 (7%)
Query: 44 IPRFFSQG----GIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL- 98
+PRFF G D H +V+RL+ D + LFNG+GG ++ + + + +
Sbjct: 1 MPRFFCPQPLAIGATIALPDAVAHHIQVVRLAPGDIITLFNGEGGEVQASLVTVAKRSVT 60
Query: 99 -DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
+V A + LP + V A + + DW++EK ELGA + PL + R
Sbjct: 61 AEVQAHVAREAELP----YAVTLAQALPEASKMDWIIEKAIELGAAGIVPLAAQ-RCVVR 115
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLA--FVAIA 215
+ + G I +++ G RL ++ + SQ L +
Sbjct: 116 LSAERAEKKLAHWQGIIVSASEQCGRNRLAQLA-----PLQDFNSWSSQQDLHKRIILTP 170
Query: 216 EATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIAL 275
A + + + + ++VGPEG F+E E + AGA + +GP LR ETA +
Sbjct: 171 RAEQSLADWARHQPPQAITVMVGPEGGFSEAEEKAALAAGAIGLAMGPRILRTETAGLTA 230
Query: 276 LATL 279
LATL
Sbjct: 231 LATL 234
>gi|421890740|ref|ZP_16321588.1| putative ribosomal RNA small subunit methyltransferase E (rsmE)
[Ralstonia solanacearum K60-1]
gi|378963926|emb|CCF98336.1| putative ribosomal RNA small subunit methyltransferase E (rsmE)
[Ralstonia solanacearum K60-1]
Length = 249
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 107/253 (42%), Gaps = 28/253 (11%)
Query: 43 GIPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTG 97
G+PRF+ + V + H+ VLRL+ D V+LF+G G R
Sbjct: 2 GLPRFYIDSPLAPHTTVTLPESVARHI-HVLRLAVGDDVQLFDGSGLEF--------RAR 52
Query: 98 LDVVALEDLKLVLPQHTQWNVFAAF------GTLKGGRADWLVEKCTELGAQSVTPLLTE 151
LD + D L TQ + A + G G + DWL+EK ELG ++ PL TE
Sbjct: 53 LDAINRRDATASLADATQPDTEARYAITLAQGIAGGDKMDWLIEKAVELGVHAIAPLQTE 112
Query: 152 LHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAF 211
+ R G+ + + + G R+ ++P + L S A
Sbjct: 113 RGV-VRLSGERATKRVQHWQALVQAACEQCGRARVP--AVSPVTTLRDWLAAAKASDRAR 169
Query: 212 VAI----AEATPLVTALSSSRNESSGL-IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRL 266
V + +++ A S R +S+G+ +++GPEG + E + AG + LG L
Sbjct: 170 VMLSPRGSQSLTQWAAQSRERIDSAGIELLIGPEGGLSPDEESLAEAAGYLPLTLGRRIL 229
Query: 267 RVETATIALLATL 279
R E+A + ++ L
Sbjct: 230 RTESAALVAVSAL 242
>gi|375363076|ref|YP_005131115.1| ribosomal RNA small subunit methyltransferase E [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|371569070|emb|CCF05920.1| ribosomal RNA small subunit methyltransferase E [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
Length = 256
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 96/239 (40%), Gaps = 27/239 (11%)
Query: 55 RVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRI---DRTGLDVVALEDLKLVLP 111
++ G++ H+ V+R+S DR+ + K G C+ + D + LP
Sbjct: 20 QITGEDVHHIANVMRMSAGDRI-ICCSKDGHEALCLLKAVSKDHISCSIAEWMGENRELP 78
Query: 112 QHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPL-----------LTELHLQSRKIG 160
+ A G KG + +W+++K TELGA P + R
Sbjct: 79 ----LKIRIASGLPKGDKLEWIIQKGTELGASMFIPFQGARSVVKLDDKKAKKKRERWAK 134
Query: 161 DNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPL 220
+ Y I V+ ++L EM N +D + +S E
Sbjct: 135 IAKEAAEQSYRNEIPEVKTVHTFRQLLEMAEN----VDKCVVAYEESSKQ----GETGAF 186
Query: 221 VTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
L S SS LI+ GPEG TE EV+++ E GA GLGP LR ETA + L+ +
Sbjct: 187 AAELKSLPQGSSLLIVFGPEGGLTESEVHQLSEKGAVLCGLGPRILRTETAPLYALSAV 245
>gi|319778530|ref|YP_004129443.1| ribosomal RNA small subunit methyltransferase E [Taylorella
equigenitalis MCE9]
gi|317108554|gb|ADU91300.1| Ribosomal RNA small subunit methyltransferase E [Taylorella
equigenitalis MCE9]
Length = 244
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 104/240 (43%), Gaps = 12/240 (5%)
Query: 45 PRFFSQ-----GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PRFF G +++ D H + LRL ++ LF+G G I
Sbjct: 4 PRFFYTLPLEIGSTIKLPKDITNHAGRSLRLKEGTKISLFSGDNTEYHGTISFNSSDAF- 62
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
+ED+K + + + A G G + D+++EK E+G P++ + + K+
Sbjct: 63 -FNVEDIKEI-SRELPLRIGLAQGLATGDKMDFIIEKAVEIGVSDFYPIIAKRSV--LKL 118
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
+ F ++ I SA G R M L+ P I+ + S S L +A +A
Sbjct: 119 NNEKFEKKLAHWSRIIISASEQCG-RNKIMQLHQPQDINEFIQNTSDS-LYLIAHPDAQS 176
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
+ + + + ++++GPEG + E+ K+ + + + LG LR ETA I ++ L
Sbjct: 177 NFLGTAETEDFDNSIVLIGPEGGWDSTELEKLRKENSRLISLGQRVLRTETAGIVTVSYL 236
>gi|315499603|ref|YP_004088406.1| hypothetical protein Astex_2610 [Asticcacaulis excentricus CB 48]
gi|315417615|gb|ADU14255.1| protein of unknown function DUF558 [Asticcacaulis excentricus CB
48]
Length = 248
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 109/238 (45%), Gaps = 22/238 (9%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
F++G I + D+ ++ V+RL D + +FNG+ G G +Q + + + V E +
Sbjct: 13 FAEGLIFPLNPDQARYVAAVMRLGDGDEISVFNGRDGEWRGRLQAVSKKHVHV---ELIA 69
Query: 108 LVLPQHTQWNVFAAFGTL-KGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLS 166
PQ N L K GR + ++EK TELG + L+T R D+ L+
Sbjct: 70 QARPQPAAGNAPKLLIALVKRGRLETIIEKATELGVGEIQLLITR-----RTNADHTNLA 124
Query: 167 CNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKL-----AFVAIAEAT--P 219
IA A +RL + P+K++ L S++ + + E T P
Sbjct: 125 ---RLQLIAQEA-AEQTERLDVPQVLAPVKLEVYLKAASETLIYGDEDSTHETGERTISP 180
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKI-VEAGATAVGLGPHRLRVETATIALL 276
++ ALS E + I++GPEG F E + V+ AV LGP LR +TA I+ L
Sbjct: 181 MLEALSGL-GEGAVSILIGPEGGFDAVERQTLSVQPNTVAVNLGPRILRADTAAISAL 237
>gi|390945664|ref|YP_006409424.1| RsmE family RNA methyltransferase [Alistipes finegoldii DSM 17242]
gi|390422233|gb|AFL76739.1| RNA methyltransferase, RsmE family [Alistipes finegoldii DSM 17242]
Length = 237
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 91/219 (41%), Gaps = 21/219 (9%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRID----RTGLDVVALEDLKLVLPQHT 114
+E H +VLRL D + + +G+G L C + D R + V LP
Sbjct: 19 EESKHCVRVLRLGRGDTLHITDGRGNLF--CCEITDDNPKRCAVRVTETRAGWEALPYSL 76
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
A T R +W +EK TE+G ++ PL TE H + R G
Sbjct: 77 ---TMAVAPTKNADRFEWFLEKATEVGVGTIIPLETE-HCERRVFKPE--------RGER 124
Query: 175 ANSAFVYGGQRLHEMVLNP--PMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSS-RNES 231
+A + + + L P P +P + +A A A++ L ++ R
Sbjct: 125 VITAAMKQSLKAYRPTLRPLTPFGEAAAMPFEGRKFIAHCAPAQSPEGKAYLPATLRRGE 184
Query: 232 SGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
+ LI++GPEGDF+ +E+ G + LG RLR ET
Sbjct: 185 AALILIGPEGDFSPEEIAFARANGFEEITLGAQRLRTET 223
>gi|115522898|ref|YP_779809.1| 16S ribosomal RNA methyltransferase RsmE [Rhodopseudomonas
palustris BisA53]
gi|115516845|gb|ABJ04829.1| protein of unknown function DUF558 [Rhodopseudomonas palustris
BisA53]
Length = 258
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 109/239 (45%), Gaps = 29/239 (12%)
Query: 45 PRFFSQ-----GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCI---QRIDRT 96
PR F G V + ++ ++ VLRLS RV FNG G + I +R++R
Sbjct: 9 PRLFVDAPLVAGTQVPLTREQANYLGNVLRLSPGGRVLAFNGSDGEWQALIVGGKRLER- 67
Query: 97 GLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
LE L PQ +V A+ LK R D++V+K ELGA ++ P+LT +
Sbjct: 68 ------LEMLLQTRPQDRLPDVTYAYAPLKHARLDYMVQKAVELGAAALVPVLTRFTQAT 121
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVA--I 214
R ++ + +A G L + P K++ L +L
Sbjct: 122 R-------VNTERMRANVIEAAEQCGI--LSLAAVEEPTKLERWLTARDGQRLLVFCDED 172
Query: 215 AEATPLVTALSSSRNES-SGL-IIVGPEGDFTEKEVNKIV-EAGATAVGLGPHRLRVET 270
AE V AL+ +R+ + +G+ +++GPEG F E+E + ++ + + LGP +R +T
Sbjct: 173 AEIADPVAALAGARDRAQAGIDVLIGPEGGFAEEERDLLLRQPSVLRLALGPRIMRADT 231
>gi|269956977|ref|YP_003326766.1| hypothetical protein Xcel_2190 [Xylanimonas cellulosilytica DSM
15894]
gi|269305658|gb|ACZ31208.1| protein of unknown function DUF558 [Xylanimonas cellulosilytica DSM
15894]
Length = 256
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 108/251 (43%), Gaps = 33/251 (13%)
Query: 46 RFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRID----RTGLDVV 101
R + GG ++G E H V R +RV++ +G G + + + R G++ V
Sbjct: 13 RGYVVGGTYVLDGGEGRHAAVVQRKRIGERVDVVDGGGTRLRCVVVAAEGAQVRLGVEEV 72
Query: 102 ALE---DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
E D+ L L Q KG R + VE E GA +V P E + +
Sbjct: 73 VTEPAPDVALTLVQALA----------KGDRDELAVEAAVETGADAVLPWQAERSVVVWR 122
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQR-----LHEMVLNPPMKIDGLLPLVSQSKLAFVA 213
GD S + + A V +R + + V P + + +V+ +A V
Sbjct: 123 -GDRAARSRARWVATV--RAAVKQARRAWVPDVGDAVTTPQLAAR-VRDVVAAGGVALVL 178
Query: 214 IAEATPLVTA----LSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVE 269
EAT V A + N L++VGPEG + E+ ++ +AGA AV LGPH LR
Sbjct: 179 HEEATTPVAAAPLPTPDAANPPELLVVVGPEGGIGDAELTRLTDAGALAVRLGPHVLRTS 238
Query: 270 TA---TIALLA 277
TA +ALLA
Sbjct: 239 TAGPVAVALLA 249
>gi|410641726|ref|ZP_11352245.1| 16S rRNA (uracil1498-N3)-methyltransferase [Glaciecola chathamensis
S18K6]
gi|410138628|dbj|GAC10432.1| 16S rRNA (uracil1498-N3)-methyltransferase [Glaciecola chathamensis
S18K6]
Length = 242
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 108/245 (44%), Gaps = 21/245 (8%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
I R + G + + + D H+ VLR V LFNG G G + ID +
Sbjct: 3 ISRIYHPGALHSDQELELTSDASNHVANVLRSKVGQPVVLFNGDGNEYSG--EFIDVSKR 60
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
V D KL + + ++ G +G R D +++K ELG +TPL+TE K
Sbjct: 61 KVRVQIDAKLSISLESPLSIHLGQGISRGDRMDLVLQKSVELGVAEITPLITE--RCGVK 118
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS----KLAFVAI 214
+ + + + I +A G+ + L+ P + V+QS +L
Sbjct: 119 LDAQRWQKKHAQWQKIIIAACEQCGRNVIP-TLHMPTEFQS---WVNQSTPALRLTLHPR 174
Query: 215 AEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274
AE + TA+ S +++GPEG F+++E+ + + G V LGP LR ETA I
Sbjct: 175 AEKSFRHTAVGS----DGVRLLIGPEGGFSDQELYQTEQGGFHTVQLGPRVLRTETAAIT 230
Query: 275 LLATL 279
++ L
Sbjct: 231 AISAL 235
>gi|302381943|ref|YP_003817766.1| hypothetical protein Bresu_0829 [Brevundimonas subvibrioides ATCC
15264]
gi|302192571|gb|ADL00143.1| protein of unknown function DUF558 [Brevundimonas subvibrioides
ATCC 15264]
Length = 237
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 103/220 (46%), Gaps = 17/220 (7%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
D+ ++T+V+RL D + +FNG+ G + I + G+ ++ ED V PQ ++
Sbjct: 21 DQSRYLTQVMRLKLGDDLLVFNGRDGEWRATLVEILKKGV-ILRAED--QVRPQAYGPDL 77
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSA 178
+K R + +VEK ELGA V L + R D+ L IA A
Sbjct: 78 ELIVAVVKKSRVETIVEKAAELGAARV-----RLTITQRTNVDHVRLD---RLDAIAIEA 129
Query: 179 FVYGGQRLHEMVLNPPMKIDGLLPLVSQS-KLAFVAIAEATPLVTALSSSRNESSGLIIV 237
G RL ++ P K+ LL S +L F P+ +A++ S I++
Sbjct: 130 AEQTG-RLDVPTVDDPQKLGALLDGWDPSRRLMFCDETGGAPVASAVTES---GPWAILI 185
Query: 238 GPEGDFTEKEVNKIVEAG-ATAVGLGPHRLRVETATIALL 276
GPEG F+ +E +++ TAV LGP LR +TA IA +
Sbjct: 186 GPEGGFSPEERDRLRALPFTTAVSLGPRILRADTAAIAAM 225
>gi|299531912|ref|ZP_07045312.1| 16S ribosomal RNA methyltransferase RsmE [Comamonas testosteroni
S44]
gi|298720087|gb|EFI61044.1| 16S ribosomal RNA methyltransferase RsmE [Comamonas testosteroni
S44]
Length = 246
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 96/227 (42%), Gaps = 19/227 (8%)
Query: 66 KVLRLSTNDRVELFNGK------GGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVF 119
+VLR D + LF G+ GG + I + R+ DV D + + V
Sbjct: 27 QVLRHQPGDVITLFEGQTGNGFTGGEFQATITHMGRS--DVGVRVDSHSPAEREAERVVH 84
Query: 120 AAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G R DWLVEK TELG S+ P++ + K GD + IA SA
Sbjct: 85 LVVGMPANERMDWLVEKATELGVASIQPVMAARSVLKLK-GDRADKKIERWQS-IAVSAC 142
Query: 180 VYGGQRLHEMVLNPPMKIDGLL-----PLVSQSKLAFVAIAEATPLVTALSSSRNESSGL 234
G R V++ P+ + L P ++L PL TA ++ +
Sbjct: 143 EQCG-RNQVPVIHAPLPLADWLRSKDAPATDTTRLVLSLREGNQPLRTAAGDAQ---TVW 198
Query: 235 IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
++ GPEG T +E + +E G LG LR ETA++A L+ L L
Sbjct: 199 VLHGPEGGLTAQEEDWALEQGWKPASLGSRVLRAETASVAALSLLAL 245
>gi|295687718|ref|YP_003591411.1| hypothetical protein Cseg_0273 [Caulobacter segnis ATCC 21756]
gi|295429621|gb|ADG08793.1| protein of unknown function DUF558 [Caulobacter segnis ATCC 21756]
Length = 238
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 108/236 (45%), Gaps = 17/236 (7%)
Query: 44 IPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVAL 103
+P S G V D+ ++T V+RLS D V LFNG+ G I + G + A
Sbjct: 6 VPNDLSAGAGVVPTVDQSRYLTSVMRLSVGDEVLLFNGRDGEWRASIVEATKRGCLLKA- 64
Query: 104 EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNG 163
D++ P T ++ +K GR + +VEK ELGA+ V L + R D
Sbjct: 65 -DVQ-TRPMDTGPDLDLIVAMVKRGRVETIVEKAAELGARRV-----RLTITRRTNVD-- 115
Query: 164 FLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS-KLAFVAI-AEATPLV 221
F+ +A G + E+V P K+D +L + +L F +A P +
Sbjct: 116 FVKLGRLDAIAMEAAEQTGRLDVPEIV--DPEKLDKILDGWDPTRRLVFCDEGGDARPAI 173
Query: 222 TALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLRVETATIALL 276
AL+ + ++ I++GPEG F +E ++ T V LGP LR +TA I+ +
Sbjct: 174 EALAGTGAPAA--ILIGPEGGFAPEERERLRGLSFVTPVSLGPRILRADTAAISAM 227
>gi|91790687|ref|YP_551639.1| 16S ribosomal RNA methyltransferase RsmE [Polaromonas sp. JS666]
gi|91699912|gb|ABE46741.1| protein of unknown function DUF558 [Polaromonas sp. JS666]
Length = 260
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 97/235 (41%), Gaps = 25/235 (10%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGL-------IEGCIQRIDRTGLDVVALEDLKLVLP 111
D+ +VLRL D + LFNG G + I+ + R+ DV A+
Sbjct: 21 DQTARHVQVLRLQPGDHITLFNGAGEGGGIGEGEFDATIEHMGRS--DVRAMVGAYTATR 78
Query: 112 QHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYY 171
+ T V A G R DWL+EK TELGA S+ PL++E + K G+ +
Sbjct: 79 RETDRAVHLALGMPANERMDWLIEKATELGAASIQPLMSERSVLRIK-GERADKKLAHWR 137
Query: 172 GFIANSAFVYGGQRL----HEMVLNPPMKID-GLLPLVSQ-------SKLAFVAIAEATP 219
G + G RL M L +K G V+Q ++L A P
Sbjct: 138 GVAVAACEQCGRNRLPAIREVMGLGDWLKAQAGQTAGVTQDSAEAVGTRLLLSLQAGTRP 197
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274
L A++ N + + GPEG + E + G V LGP LR ETA +A
Sbjct: 198 LAQAVA---NTGALTFLSGPEGGLSPAEEAAAIACGFVPVTLGPRVLRAETAPLA 249
>gi|219848626|ref|YP_002463059.1| 16S ribosomal RNA methyltransferase RsmE [Chloroflexus aggregans
DSM 9485]
gi|219542885|gb|ACL24623.1| protein of unknown function DUF558 [Chloroflexus aggregans DSM
9485]
Length = 251
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 101/232 (43%), Gaps = 40/232 (17%)
Query: 65 TKVLRLSTNDRVELFNGKGGLIEGCIQRIDR------------TGLDVVALEDLKLVLPQ 112
T+VLRL+ DRV L +GKG IDR G ++ + DL L L
Sbjct: 37 TRVLRLTAGDRVLLLDGKGMAAVVQFTAIDRRRAQGYVLTRCHAGGELAVVIDLYLAL-- 94
Query: 113 HTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYG 172
++ R +W ++K ELGA+ + P+ L +I + + +
Sbjct: 95 ------------IRPERFEWALQKAVELGARRIIPVAFARSLSGDRIDTHRLMR----WQ 138
Query: 173 FIANSAFVYGGQ-RLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT----PLVTALSSS 227
IA A G+ RL E+ + P + ++ LA + +A +VT+ +S
Sbjct: 139 RIATEAAEQSGRGRLPEV--SAPQPFSAAVVAGGRADLALMLDEQAEHHLRDIVTSPTSL 196
Query: 228 RNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
R + II GPEG +E ++ G AV LGP LR ETA +A LA L
Sbjct: 197 RQIA---IISGPEGGIDPRERRAAIDHGFVAVSLGPRILRAETAPLAALAML 245
>gi|16079598|ref|NP_390422.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus subtilis subsp.
subtilis str. 168]
gi|221310469|ref|ZP_03592316.1| 16S rRNA m3U1498 methyltransferase [Bacillus subtilis subsp.
subtilis str. 168]
gi|221314792|ref|ZP_03596597.1| 16S rRNA m3U1498 methyltransferase [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221319715|ref|ZP_03601009.1| 16S rRNA m3U1498 methyltransferase [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221323992|ref|ZP_03605286.1| 16S rRNA m3U1498 methyltransferase [Bacillus subtilis subsp.
subtilis str. SMY]
gi|418032279|ref|ZP_12670762.1| 16S rRNA methyltransferase [Bacillus subtilis subsp. subtilis str.
SC-8]
gi|452915190|ref|ZP_21963816.1| ribosomal RNA small subunit methyltransferase E [Bacillus subtilis
MB73/2]
gi|1730989|sp|P54461.1|RSME_BACSU RecName: Full=Ribosomal RNA small subunit methyltransferase E;
AltName: Full=16S rRNA m3U1498 methyltransferase
gi|1303811|dbj|BAA12467.1| YqeU [Bacillus subtilis]
gi|1890060|dbj|BAA12079.1| YqeU [Bacillus subtilis]
gi|2634990|emb|CAB14486.1| methylase of U1498 in 16S rRNA [Bacillus subtilis subsp. subtilis
str. 168]
gi|351471142|gb|EHA31263.1| 16S rRNA methyltransferase [Bacillus subtilis subsp. subtilis str.
SC-8]
gi|407959790|dbj|BAM53030.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus subtilis
BEST7613]
gi|407965365|dbj|BAM58604.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus subtilis
BEST7003]
gi|452115538|gb|EME05934.1| ribosomal RNA small subunit methyltransferase E [Bacillus subtilis
MB73/2]
Length = 256
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 101/238 (42%), Gaps = 27/238 (11%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE--DLKLVLPQH 113
+ G+E H+ V+R++ D++ + G + +Q + + + + +E + LP
Sbjct: 21 ITGEEVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSKDKVSCLVIEWTNENRELP-- 78
Query: 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHL-----------QSRKIGDN 162
V+ A G KG + +W+++K TELGA + P + + R
Sbjct: 79 --IKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIA 136
Query: 163 GFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKL-AFVAIAEATPLV 221
+ Y + V+ Q+L + + + + Q ++ AF AI + P
Sbjct: 137 KEAAEQSYRNEVPRVMDVHSFQQLLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLP-- 194
Query: 222 TALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
SS LI+ GPEG TE EV ++ E GLGP LR ETA + L+ +
Sbjct: 195 -------KGSSLLIVFGPEGGLTEAEVERLTEQDGVTCGLGPRILRTETAPLYALSAI 245
>gi|388570270|ref|ZP_10156629.1| hypothetical protein Q5W_4986 [Hydrogenophaga sp. PBC]
gi|388262552|gb|EIK88183.1| hypothetical protein Q5W_4986 [Hydrogenophaga sp. PBC]
Length = 234
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 96/232 (41%), Gaps = 16/232 (6%)
Query: 44 IPRFFSQGGIVRVEGDEFW------HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTG 97
+PRFF + G E +VLRL D + LFNG+GG ++R+ R+
Sbjct: 1 MPRFFCDATLA--PGAELALPPGAARHVQVLRLQPGDEITLFNGQGGQWTARVRRMGRS- 57
Query: 98 LDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
DV + + + V A G R DWLVEK TELG + PL T+ H R
Sbjct: 58 -DVAVRVEAHEAIDREAAREVTLAIGMPANERMDWLVEKATELGVARIAPLHTQ-HGVLR 115
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA 217
G+ ++ IA +A G R + P L +++ A V ++ A
Sbjct: 116 LSGERAAKK-QAHWRAIAQAACEQCG-RNRVPTIEPVCDFAAFL---HEAQGARVVLSLA 170
Query: 218 TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVE 269
A + ++ +++GPEG + E + AG LG LR E
Sbjct: 171 EGGAPAPQTLGGDAPLTVLIGPEGGLSAAEDAQARTAGFAPTQLGARVLRAE 222
>gi|254281685|ref|ZP_04956653.1| PAS/PAC sensor signal transduction histidine kinase [gamma
proteobacterium NOR51-B]
gi|219677888|gb|EED34237.1| PAS/PAC sensor signal transduction histidine kinase [gamma
proteobacterium NOR51-B]
Length = 242
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 105/242 (43%), Gaps = 19/242 (7%)
Query: 45 PRFFS-----QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PR F+ QG + + H+ +VLRL + + +FNG G I + + +
Sbjct: 4 PRIFADLPLAQGAEFTLPDNASLHIGRVLRLDSGQPLTVFNGDGEDYHATITTVTKRSVS 63
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTL--KGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
+ ++ V T + G KG R DW V+K TELG +TPL++E ++ R
Sbjct: 64 I----EVHSVATNGTTSPLEVELGLALSKGDRFDWAVQKATELGVAHITPLVSE-RVEVR 118
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA 217
++ + ++ G L ++ P ++ L V ++ L V +
Sbjct: 119 LNPQREEKKRTHWHNIVISACEQCGRSTL--AGVSSPTQLRPWLERV-EAPLKLVLDHRS 175
Query: 218 TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
TAL + + L+I GPEG TE E+ +G + LGP LR ETA + L+
Sbjct: 176 ---ATALPEEKPDRVALLI-GPEGGLTESELELAEASGFQRLQLGPRVLRTETAPVVALS 231
Query: 278 TL 279
L
Sbjct: 232 VL 233
>gi|304403938|ref|ZP_07385600.1| protein of unknown function DUF558 [Paenibacillus curdlanolyticus
YK9]
gi|304346916|gb|EFM12748.1| protein of unknown function DUF558 [Paenibacillus curdlanolyticus
YK9]
Length = 254
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 101/237 (42%), Gaps = 19/237 (8%)
Query: 58 GDEFWHMTKVLRLSTNDRVELFNGKG--GLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQ 115
GD+ H ++V+R+ + D + +G G + + DR D+V KL +
Sbjct: 20 GDDAHHASRVMRMRSGDSFIVSDGAGREAIAKATSIAADRIEADIVE----KLAGDREPA 75
Query: 116 WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE-LHLQSRKIGDNGFLSCNFYYGFI 174
W + A KG + + +++K TE+GA + P +E + +Q + L + I
Sbjct: 76 WQITIAQSLPKGDKMELIIQKGTEIGAYAFVPFESERMIVQYDAKKEAKRLE---RWEKI 132
Query: 175 ANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAE------ATPLVTALS--S 226
A A R + P L+ + + L E + L A+ +
Sbjct: 133 AKEA-AEQAHRSRIPAIAKPASWKQLVGSIGEYDLVLFCYEEEGRSGSGSGLRDAVRPIA 191
Query: 227 SRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCS 283
R+ + L++VGPEG FTE E AGA VGLG LR ETA + L L+ S
Sbjct: 192 DRSNARVLVVVGPEGGFTESEAADASGAGAVVVGLGKRILRTETAGLVALTALLYES 248
>gi|302346384|ref|YP_003814682.1| RNA methyltransferase, RsmE family [Prevotella melaninogenica ATCC
25845]
gi|302150957|gb|ADK97218.1| RNA methyltransferase, RsmE family [Prevotella melaninogenica ATCC
25845]
Length = 244
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 103/247 (41%), Gaps = 29/247 (11%)
Query: 47 FFSQGGIVRVE--GDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE 104
F+ V E +E H +VLRL D + L +G+G + + + L
Sbjct: 7 FYVPNAAVETELPAEEAVHAIRVLRLKEGDEMFLMDGEGCFYKAEVALVSSKK----CLY 62
Query: 105 DLKLVLPQHTQW--NVFAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHLQSRKIGD 161
+K L Q W + A K GR +W+ EK TE+G E+ K +
Sbjct: 63 TIKETLKQEPVWRGKIHLAIAPTKDMGRIEWMTEKATEVG-------FDEISFLDCKFSE 115
Query: 162 NGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVA-----IAE 216
L + + ++ V ++ + V+NP + S + F+ I+
Sbjct: 116 RKTLRVDRIEKIVISA--VKQSRKGWKPVVNPMTPFRRFIENCSNNGRKFICHCYPEISR 173
Query: 217 ATPLVTALSSSRNESSG---LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
A TA+S SS ++VGPEGDF+ EV+ +E G +V LG RLR ETA
Sbjct: 174 AD-FFTAISQEEQPSSAEDITVLVGPEGDFSIDEVSFALEHGFESVTLGNSRLRTETA-- 230
Query: 274 ALLATLM 280
L A +M
Sbjct: 231 GLSAVMM 237
>gi|300310746|ref|YP_003774838.1| hypothetical protein Hsero_1414 [Herbaspirillum seropedicae SmR1]
gi|300073531|gb|ADJ62930.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
Length = 241
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 95/217 (43%), Gaps = 16/217 (7%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQ--W 116
++ H VLRL D + LFNG+GG + +++ A +K P+ + +
Sbjct: 20 EQIAHHIHVLRLQPGDAITLFNGEGGEYTATLSAVEKK----RAHAQVKTFSPREAELPY 75
Query: 117 NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIAN 176
+ A +G + DW+VEK ELGA ++ PL + R G+ + G I
Sbjct: 76 ALTLAQALPEGAKMDWIVEKAVELGATALQPLAAQ-RCVVRLSGERAEKKQAHWQGIIHA 134
Query: 177 SAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLA---FVAIAEATPLVTALSSSRNESSG 233
+A G RL + ++ ++QS L ++ A PL + + +
Sbjct: 135 AAEQCGRNRLPHL-----GEVTEFKRWIAQSDLHRRILLSPRGAEPL-SGWARHHPPQAV 188
Query: 234 LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
++VGPEG F+++E GA + +G LR ET
Sbjct: 189 TLVVGPEGGFSDEEEELACAQGALMLSMGSRVLRTET 225
>gi|114771337|ref|ZP_01448757.1| hypothetical protein OM2255_08270 [Rhodobacterales bacterium
HTCC2255]
gi|114548262|gb|EAU51149.1| hypothetical protein OM2255_08270 [Rhodobacterales bacterium
HTCC2255]
Length = 243
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 105/227 (46%), Gaps = 29/227 (12%)
Query: 50 QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEG-CIQRIDRTGLDVVALEDLKL 108
+G + + D+ ++ V+RL+ D + +FNGK G + +Q R G+ +V + +
Sbjct: 17 EGQSILLARDQANYLFNVMRLNIGDFISVFNGKDGEWQAEVLQANKRKGIIIVKNQSMPQ 76
Query: 109 VLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCN 168
+LP +V+ F +K R D++VEK TE+G + P+ T+ + S +I + + +
Sbjct: 77 LLPP----DVWLLFAPIKKTRTDFIVEKATEMGVSRICPVFTD-YTNSDRIKQSRLQAHS 131
Query: 169 FYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVS-------QSKLAFVAIAEATPLV 221
+V PP +D L L S + L F + V
Sbjct: 132 IEAAEQCGGTYV------------PP--VDELSTLTSVLKSWPKERHLLFCDEHKVGENV 177
Query: 222 TALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLR 267
++ +++++ I++GPEG F++ EV + T++ LGP LR
Sbjct: 178 KSMKATKSDKWA-ILIGPEGGFSDSEVMHLKSLEFVTSISLGPRILR 223
>gi|395778595|ref|ZP_10459107.1| RsmE family RNA methyltransferase [Bartonella elizabethae Re6043vi]
gi|423715093|ref|ZP_17689317.1| RsmE family RNA methyltransferase [Bartonella elizabethae F9251]
gi|395417803|gb|EJF84140.1| RsmE family RNA methyltransferase [Bartonella elizabethae Re6043vi]
gi|395430577|gb|EJF96619.1| RsmE family RNA methyltransferase [Bartonella elizabethae F9251]
Length = 247
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 112/232 (48%), Gaps = 22/232 (9%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGG--LIEGCIQRIDRTGLDVVALEDLKLVLP 111
+++EG + +++ VLR+ + LFNG+ G L + I + + ++ E L
Sbjct: 22 IKIEGAQAFYLVHVLRMKEGAEILLFNGQDGEWLAKLIIVKKKFVVVKLIHQERL----- 76
Query: 112 QHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYY 171
Q T +N+ F LK R D++V+K E+G + P++T H Q +I + + N
Sbjct: 77 QTTHFNLIYCFAPLKNARLDYMVQKAVEMGVSVLQPVITH-HTQVTRI-NMARMKAN--- 131
Query: 172 GFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAE---ATPLVTALSSSR 228
+ ++ G L + V + ++ LL +++ F E PL + R
Sbjct: 132 --VIEASEQCGILSLPDCV--SALSLEELLARWDETQPLFFCDEEHQSHNPLSSF--KQR 185
Query: 229 NESSGLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLRVETATIALLATL 279
+ ++ +++GPEG F+E+E + + + ++ LGP LR +TA +A L L
Sbjct: 186 DVTAPGVLIGPEGGFSEEERSFLKKHPFVVSISLGPRILRADTAAVAALTLL 237
>gi|297571544|ref|YP_003697318.1| hypothetical protein Arch_0977 [Arcanobacterium haemolyticum DSM
20595]
gi|296931891|gb|ADH92699.1| protein of unknown function DUF558 [Arcanobacterium haemolyticum
DSM 20595]
Length = 245
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 92/226 (40%), Gaps = 12/226 (5%)
Query: 51 GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVL 110
G +R++GDE H V R +R+++ NGKG + I D +V +
Sbjct: 17 GETIRLDGDEARHAATVRRTRVGERIDIVNGKG--LRATITVTDVAKSSLVGTVEHVAND 74
Query: 111 PQHT-QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNF 169
P H Q + A KGGR + VE TE GA + P E + S
Sbjct: 75 PAHNPQITLVQALA--KGGRDEQAVETATEYGADAFIPWQAERSIVSWSDPAKARKGVGR 132
Query: 170 YYGFIANSAFVYGGQRLHEMVLNPPMKID---GLLPLVSQSKLAFVAIAEAT-PLVTALS 225
+ A SA + V P + + + ++ AT P+ T L
Sbjct: 133 WEA-TAQSAAKQSRRSWIPTVDQPHSSASLACHIADCCADGGVVYICHESATTPITTQLD 191
Query: 226 SSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA 271
SS + +I+VGPEG T+KE+ + AG V LG H LR TA
Sbjct: 192 SSSRKV--MIVVGPEGGITDKELELLTNAGGRVVLLGEHVLRSATA 235
>gi|194100123|ref|YP_002003263.1| 16S ribosomal RNA methyltransferase RsmE [Neisseria gonorrhoeae
NCCP11945]
gi|268681265|ref|ZP_06148127.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|193935413|gb|ACF31237.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
gi|268621549|gb|EEZ53949.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
Length = 241
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 115/249 (46%), Gaps = 29/249 (11%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRF+ S G V + + H+ VLR+ N+ + LF+GKG + +++
Sbjct: 1 MPRFYLPENLSVGQTVDLPDNIVRHL-NVLRIRPNENITLFDGKGKAHTARLTVLEKHRA 59
Query: 99 DVVAL-EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
+ L ED + N+ G R D+ ++K ELG ++ P+++E + R
Sbjct: 60 EAEILHED---TTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCI-VR 115
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA 217
G+ + + ++ G + PP +LP++ + +E+
Sbjct: 116 LDGERAAKRLARWQEIVISACEQSGRNTV------PP-----VLPIIGYREALDKMPSES 164
Query: 218 TPLVTALSSS------RNESSGLI-IVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
T L+ +++ + R+ S ++ +VGPEG +TE+E + EAG AV LG LR ET
Sbjct: 165 TRLIMSINRACKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGFQAVTLGKRILRTET 224
Query: 271 ATIALLATL 279
A +A +A +
Sbjct: 225 APLAAIAAM 233
>gi|431805645|ref|YP_007232546.1| ribosomal RNA small subunit methyltransferase E [Liberibacter
crescens BT-1]
gi|430799620|gb|AGA64291.1| Ribosomal RNA small subunit methyltransferase E [Liberibacter
crescens BT-1]
Length = 249
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 99/222 (44%), Gaps = 18/222 (8%)
Query: 60 EFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVF 119
++ ++ VLR+ + + LFNG G G I + L +K + Q N
Sbjct: 28 QYHYIKHVLRMKEGEEILLFNGHDGEWIGNISYLSGKRL---IFNIIKQIRQQKKSGNFE 84
Query: 120 AAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAF 179
F LK R D++++K E+G ++ P++T+ H Q + N L Y A
Sbjct: 85 YLFSLLKVERLDYIIQKAVEMGFATIRPVITD-HTQGKITNMNRLLD---YAVGAAEQCG 140
Query: 180 VYGGQRLHEMVLNPPMKIDGLL---PLVSQSKLAFVAIAEATPLVTALSSSRNESSGLII 236
+ R+ + P+K+ LL P Q A PL T S +S I+
Sbjct: 141 ILSIPRIEK-----PIKLTTLLENWPPNKQIIFADERQKTRNPLETLTQLS--TTSLAIL 193
Query: 237 VGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLRVETATIALLA 277
+GPEG F+ +E ++ E +AV LGP LR +TA +AL+
Sbjct: 194 IGPEGGFSIEERQRLQELPFVSAVSLGPRILRSDTAAVALMV 235
>gi|347757046|ref|YP_004864608.1| RNA methyltransferase family protein [Micavibrio aeruginosavorus
ARL-13]
gi|347589564|gb|AEP08606.1| RNA methyltransferase family protein [Micavibrio aeruginosavorus
ARL-13]
Length = 244
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 103/244 (42%), Gaps = 35/244 (14%)
Query: 45 PRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRI-DRTGL 98
PR F S G V + D+ + V+R D V +FNG+ G I R G
Sbjct: 9 PRLFLDAALSAGAEVPLSPDQTHYFKTVMRRKDGDSVRVFNGRDGEWASTFHAIGKRDG- 67
Query: 99 DVVALEDLKLVLPQH---TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQ 155
AL L++PQ ++F F +K R D L+EK ELG + P+LT + +
Sbjct: 68 ---ALHVADLLIPQTPAPAPAHLF--FAPIKKARMDMLIEKAVELGVTDLHPVLTR-NTE 121
Query: 156 SRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEM---VLNPPMKIDGLLPLVSQSKLAFV 212
R + D + + ++ M L+P + +D + S F
Sbjct: 122 VRDVNDERL-----------RAQIIEASEQCERMDIPTLHPLIALDRVPGAWSHDTPIFA 170
Query: 213 AIAEA--TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGA-TAVGLGPHRLRVE 269
A+ TP + L S N SS +++GPEG FT +E + + T V LG LR E
Sbjct: 171 ALERQGDTPDLQNLLS--NRSSFALLIGPEGGFTTEEATILRKTTPFTPVSLGSSILRSE 228
Query: 270 TATI 273
TA +
Sbjct: 229 TAAL 232
>gi|86134044|ref|ZP_01052626.1| protein of unknown function (DUF558) [Polaribacter sp. MED152]
gi|85820907|gb|EAQ42054.1| protein of unknown function (DUF558) [Polaribacter sp. MED152]
Length = 235
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 96/227 (42%), Gaps = 21/227 (9%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVF--- 119
H+ KVLR D +++ NGK L + I D + +K + W +
Sbjct: 25 HIVKVLRKKEGDILKITNGKSYLFDAEIT----FASDKKCIVQIKSATEKLKPWPYYLHI 80
Query: 120 AAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAF 179
A T R +W +EK TE+G +TP++ + + R + F I SA
Sbjct: 81 AIAPTKNNDRTEWFLEKATEIGIDEITPIICS-NSERRVVKLERFEK-------IIQSAM 132
Query: 180 VYGGQRLHEMV--LNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIV 237
Q L + LN +K + + L +A E + ++N I++
Sbjct: 133 ---KQSLKFTLPKLNKAIKFNEFIQQ-DIPGLKCIAHCEDQEKNSLKLVAKNTDKITILI 188
Query: 238 GPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSD 284
GPEGDF+ E+ K + A T + LG RLR ETA + + T+ L +
Sbjct: 189 GPEGDFSVDEIKKALNANFTPISLGESRLRTETAALVAVNTISLVQE 235
>gi|381152797|ref|ZP_09864666.1| RNA methyltransferase, RsmE family [Methylomicrobium album BG8]
gi|380884769|gb|EIC30646.1| RNA methyltransferase, RsmE family [Methylomicrobium album BG8]
Length = 248
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 107/254 (42%), Gaps = 16/254 (6%)
Query: 40 SRGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
SR + + + G + ++ D ++ VLRL+ ++R+ LF+G G + + R +
Sbjct: 4 SRLYVSQPLNCGQHIELDDDSAHYVRTVLRLAKDNRIILFDGSGADYPSVLLEVSRNRV- 62
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
VA+E + + V G +G R D V+K ELG +TP+ TE L K
Sbjct: 63 AVAIEQ-RQSRDVESPLAVCLGLGMARGDRMDLSVQKAVELGVNRITPIETERCLVQLK- 120
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS---KLAFVAIAE 216
GD + + ++ G L E+ I L VS+ KL AE
Sbjct: 121 GDKRVQRFTHWQRIVRHATEQCGRSILPELA-----PITSLHQWVSEQQGLKLFLDPYAE 175
Query: 217 ATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALL 276
+T + ++ GPEG F + E AG V LG LR ETA++A L
Sbjct: 176 ----ITLADLQPEDDQVTLLTGPEGGFADHEREAAKAAGFVPVRLGGRILRTETASLAAL 231
Query: 277 -ATLMLCSDSQQMP 289
A ML D + P
Sbjct: 232 SAVQMLWGDFRSGP 245
>gi|197116640|ref|YP_002137067.1| 16S ribosomal RNA methyltransferase RsmE [Geobacter bemidjiensis
Bem]
gi|197086000|gb|ACH37271.1| 16S rRNA (3-methyl-U1498)-methyltransferase [Geobacter bemidjiensis
Bem]
Length = 246
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 93/229 (40%), Gaps = 3/229 (1%)
Query: 51 GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVL 110
G V + G+ + HM +VLR+ VEL G ++ + L V +
Sbjct: 13 GDSVTITGELYRHMARVLRIKQGSEVELIEDGDSRHRGTVEEVGAKSL-TVRISASAAPA 71
Query: 111 PQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFY 170
+ + G KG + D +++KCTELG V + + GD Y
Sbjct: 72 AEEPGLRITLLQGMPKGEKLDLILQKCTELGVAEVVAFDAARSVVKLR-GDRSATRLARY 130
Query: 171 YGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNE 230
+ +A G + ++ L + D L + KL E T L +
Sbjct: 131 EKIVREAARQSGRRSAPKVALGGTLA-DVLADSHHEVKLLLYEGEEKTTLHGCFGAFEAP 189
Query: 231 SSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
S ++VGPEG +EV + + AG T V LG LR ETA +A+L+ L
Sbjct: 190 ESVAVVVGPEGGLAPEEVRQALAAGFTPVTLGKRILRTETAGLAMLSIL 238
>gi|218961073|ref|YP_001740848.1| hypothetical protein CLOAM0759 [Candidatus Cloacamonas
acidaminovorans]
gi|167729730|emb|CAO80642.1| conserved hypothetical protein [Candidatus Cloacamonas
acidaminovorans str. Evry]
Length = 233
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 98/229 (42%), Gaps = 21/229 (9%)
Query: 44 IPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTG--LDVV 101
+P S I+ VEG+EF H+ V R + + V+L +G G + EG + I + ++++
Sbjct: 6 LPELSSDKKIIAVEGEEFHHLINVKRTAIGELVKLNSGSGLMAEGKLTEIHKNSAVIEII 65
Query: 102 ALEDLKLVLPQHTQWNVFA-AFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIG 160
+E P+ FA AF +K + L+EKCTELG + P+LT+ ++
Sbjct: 66 KIETFP--FPERP----FAIAFALIKNKHDELLIEKCTELGVTAFYPMLTDYSVR----- 114
Query: 161 DNGFLSCNFYYGFIANSAFVYGGQRLHEMV--LNPPMKIDGLLPLVSQSKLAFVAIAEAT 218
S N F +A Q + + +N P+ + + V +E
Sbjct: 115 ---IPSKNTTQRF-KRTALAAIKQCDNPWLPRINEPLSFKQAIEKIISEGWIPVLCSEKR 170
Query: 219 PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLR 267
P +S+ N I+GPEG F+E E E + + H R
Sbjct: 171 P-AKKISALPNNIKPCFIIGPEGGFSEAEFAFFNEKNIFQISICHHITR 218
>gi|83950615|ref|ZP_00959348.1| hypothetical protein ISM_05935 [Roseovarius nubinhibens ISM]
gi|83838514|gb|EAP77810.1| hypothetical protein ISM_05935 [Roseovarius nubinhibens ISM]
Length = 234
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 104/228 (45%), Gaps = 20/228 (8%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCI-QRIDRTGLDVVALEDLKLVLPQHT 114
++ D+ ++ V+RL V LFNG+ G + +R R G AL+ + PQ
Sbjct: 1 MDRDQANYLFNVMRLDQGASVTLFNGRDGAWRAEVAERGKRGG----ALQVAEQTAPQRN 56
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
+++ F +K R D++VEK E+GA + P+ TE R + +
Sbjct: 57 PPDLWLLFAPIKKARTDFIVEKAAEMGASRILPVQTEFTNSER-------IRQDRLQAHA 109
Query: 175 ANSAFVYGGQRLHEMVLNPPMKIDGLL-PLVSQSKLAFVAIA---EATPLVTA-LSSSRN 229
+A GG + E+ ++D LL + +L F A +PL +SS
Sbjct: 110 IEAAEQCGGTFVPEVA--DLARLDRLLSDWPEERQLMFCDEALFDRPSPLTNGDATSSGT 167
Query: 230 ESSGLIIVGPEGDFTEKEVNKI-VEAGATAVGLGPHRLRVETATIALL 276
+ I++GPEG F++ E +++ A V LGP LR +TA +A +
Sbjct: 168 GTPWAILIGPEGGFSDAERSRLHALPFAHPVSLGPRILRADTAAVAAM 215
>gi|257870868|ref|ZP_05650521.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
gi|257805032|gb|EEV33854.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
Length = 251
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 104/259 (40%), Gaps = 59/259 (22%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKL--VLPQH 113
VEG+ F HM +V+R+ +D V L I IQ+ID + ++ +E + LP H
Sbjct: 18 VEGEPFHHMVRVMRMVPDDCVYLVFQDQVAILAKIQQIDEQVVHLIEVEKEQQDKELPIH 77
Query: 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGF 173
V A G KG + + +V+K TELGA + GF
Sbjct: 78 ----VTIASGYPKGDKLELIVQKGTELGAAK-------------------------FIGF 108
Query: 174 IANSAFVY--------GGQRLHEMVLNPPMKID-GLLPLV-----------SQSKLAFVA 213
A S+ V QRL ++ + +P++ S S +V
Sbjct: 109 PAQSSVVKWDHKKLQKKQQRLQKIAQEAAEQAQRQRVPIIQLAASDKELWDSLSNYDYVI 168
Query: 214 IA--------EATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHR 265
+A E L+ LS + S L I GPEG T E+ + GA GLGP
Sbjct: 169 VAYEESAKSGENAKLIDILSKAAPGSKILAIFGPEGGLTPAEITRAESQGAVICGLGPRI 228
Query: 266 LRVETATIALLATLMLCSD 284
LR ETA L+ + + ++
Sbjct: 229 LRTETAPFYFLSAVSVLTE 247
>gi|390951541|ref|YP_006415300.1| 16S rRNA m(3)U1498 methyltransferase [Thiocystis violascens DSM
198]
gi|390428110|gb|AFL75175.1| 16S rRNA m(3)U-1498 methyltransferase [Thiocystis violascens DSM
198]
Length = 244
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 96/218 (44%), Gaps = 11/218 (5%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHT-QWNVFAA 121
H+T+VLRL + + LFNG G + +RT V+ + P+ + ++ A
Sbjct: 27 HLTQVLRLVADAPLILFNGDGRDYPARLIESNRTAATVLVEGASE---PETAPRLRIYLA 83
Query: 122 FGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVY 181
G KG R D+ ++K ELG +TPL TE Q R G + G + +
Sbjct: 84 LGVSKGERMDYAIQKAVELGVDRLTPLFTE-RSQVRLDGARLERRLEHWRGIVIGACEQS 142
Query: 182 GGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEG 241
G +RL L P ++ L + + A +T + + + ++VGPEG
Sbjct: 143 GRRRLP--TLEPAATLEPWL--ATAPAGGLLLDPLAPLALTEFPAPEIDVT--LLVGPEG 196
Query: 242 DFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
+ +E + G V LGP LR ETA +A +A +
Sbjct: 197 GLSSREREQARRQGFQGVRLGPRILRTETAPLAAIAVI 234
>gi|268602715|ref|ZP_06136882.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268586846|gb|EEZ51522.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
Length = 241
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 115/249 (46%), Gaps = 29/249 (11%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRF+ S G V + + H+ VLR+ N+ + LF+GKG + +++
Sbjct: 1 MPRFYLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHTARLTVLEKHRA 59
Query: 99 DVVAL-EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
+ L ED + N+ G R D+ ++K ELG ++ P+++E + R
Sbjct: 60 EAEILHED---TTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCI-VR 115
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA 217
G+ + + ++ G + PP +LP++ + +E+
Sbjct: 116 LDGERAAKRLARWQEIVISACEQSGRNTV------PP-----VLPIIGYREALDKMPSES 164
Query: 218 TPLVTALSSS------RNESSGLI-IVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
T L+ +++ + R+ S ++ +VGPEG +TE+E + EAG AV LG LR ET
Sbjct: 165 TRLIMSINRACKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGFQAVTLGKRILRTET 224
Query: 271 ATIALLATL 279
A +A +A +
Sbjct: 225 APLAAIAAM 233
>gi|167644342|ref|YP_001682005.1| 16S ribosomal RNA methyltransferase RsmE [Caulobacter sp. K31]
gi|167346772|gb|ABZ69507.1| protein of unknown function DUF558 [Caulobacter sp. K31]
Length = 238
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 112/245 (45%), Gaps = 35/245 (14%)
Query: 44 IPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKG-----GLIE----GCIQRID 94
+P G V D+ ++T V+RL+ D + +FNG+ GL E GC+ R +
Sbjct: 6 VPHPLKVGAGVAPTVDQSRYLTAVMRLNVGDEILVFNGQDGEWRCGLTEAGKRGCLLRCE 65
Query: 95 RTGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHL 154
+ DL LV+ +K GR + +VEK ELGA+ V LT
Sbjct: 66 EQTREQDHAPDLDLVV------------AMVKRGRVETIVEKAAELGARRVR--LT---- 107
Query: 155 QSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS-KLAFVA 213
Q+R+ + FL +A G RL V++ PMK+D +L + +L F
Sbjct: 108 QTRRTNVD-FLKLGRLDAIAIEAAEQTG--RLDVPVIDDPMKLDKILDTWDPARRLVFCD 164
Query: 214 I-AEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLRVETA 271
+A ++ A++ + ++ I++GPEG F +E ++ V LGP LR +TA
Sbjct: 165 EGGDARTMIEAVTGTGAPAA--ILIGPEGGFAPEERKRLRSLPFVIPVSLGPRILRADTA 222
Query: 272 TIALL 276
IA +
Sbjct: 223 AIAAM 227
>gi|268600483|ref|ZP_06134650.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|291044717|ref|ZP_06570426.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|268584614|gb|EEZ49290.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|291011611|gb|EFE03607.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
Length = 241
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 112/249 (44%), Gaps = 29/249 (11%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRF+ S G V + + H+ VLR+ N+ + LF+GKG + +++
Sbjct: 1 MPRFYLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHTARLTVLEKHRA 59
Query: 99 DVVAL-EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
+ L ED + N+ G R D+ ++K ELG ++ P+++E + R
Sbjct: 60 EAEILHED---TTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCI-VR 115
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA 217
G+ + + ++ G + PP +LP++ + +E
Sbjct: 116 LDGERAAKRLARWQEIVISACEQSGRNTV------PP-----VLPIIGYREALDKMPSEN 164
Query: 218 TPLVTALSSSRN-----ESSGLII--VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
T L+ +++ +R SG I+ VGPEG +TE+E + EAG AV LG LR ET
Sbjct: 165 TKLIMSINRARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGFQAVTLGKRILRTET 224
Query: 271 ATIALLATL 279
A +A + +
Sbjct: 225 APLAAITAM 233
>gi|226324635|ref|ZP_03800153.1| hypothetical protein COPCOM_02420 [Coprococcus comes ATCC 27758]
gi|225207083|gb|EEG89437.1| RNA methyltransferase, RsmE family [Coprococcus comes ATCC 27758]
Length = 245
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 105/235 (44%), Gaps = 10/235 (4%)
Query: 51 GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVL 110
G +R+EG + HM VLR+ +++ E+ +G+ ++ + + LE+++
Sbjct: 13 GDKIRIEGGDVNHMKNVLRMKLHEKAEISDGESRTYLCEVEAYEEDVAVLHILEEMEADT 72
Query: 111 PQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFY 170
++ +F G K + + +V+K ELG V P+ + + ++ D
Sbjct: 73 EPASKLYLFQ--GLPKSDKMELIVQKAVELGVYQVIPVAMKRSVV--RLDDKKAAKKADR 128
Query: 171 YGFIANSAFVYGGQ-RLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRN 229
+ IA SA G+ R+ E+ + P+ L + + + + A + R
Sbjct: 129 WNSIAESAAKQAGRSRIPEVTM--PLSYKEALKMAEELDVTLLPYELAGGMEVTREVIRQ 186
Query: 230 ESSGL---IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
SG I +GPEG F +EV+ V GA + LG LR ETA +A LA LM
Sbjct: 187 IKSGQSVGIFIGPEGGFEPEEVDAAVSMGARVITLGRRILRTETAGLATLAILMF 241
>gi|260892511|ref|YP_003238608.1| hypothetical protein Adeg_0610 [Ammonifex degensii KC4]
gi|260864652|gb|ACX51758.1| protein of unknown function DUF558 [Ammonifex degensii KC4]
Length = 251
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 99/229 (43%), Gaps = 38/229 (16%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
+E ++ VLRL DRV + +G+G G I R R ++V E L L P V
Sbjct: 21 EESHYLLSVLRLRAGDRVAVHDGEGRARAGIILRESRGRVEVELGEYLSL--PPEPPVFV 78
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHL------QSRKIGDNGFLSCNFYYG 172
G KG + D +V+K TELG + PLLTE + ++RK + +
Sbjct: 79 TLFQGIPKGEKMDLVVQKATELGVSRIVPLLTERVVVQWDGERARKRRER--------WQ 130
Query: 173 FIANSAFVYGGQ----RLHEMVLNP-------PMKIDGLLPLVSQSKLAFVAIAEATPLV 221
+A A G+ R+ E+ P P + G++P + L+
Sbjct: 131 RLAREAVRQCGRSTVPRIKEVTSLPQALEELEPETV-GIMPWEGERNLSL---------- 179
Query: 222 TALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
+ SR+ + +GPEG F+E+EV E G V LGP LR ET
Sbjct: 180 RSCLHSRHPRRVALFIGPEGGFSEREVALARERGVFTVTLGPRILRTET 228
>gi|188588657|ref|YP_001920258.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum E3
str. Alaska E43]
gi|188498938|gb|ACD52074.1| conserved surface protein [Clostridium botulinum E3 str. Alaska
E43]
Length = 254
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 20/228 (8%)
Query: 55 RVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHT 114
++ GD+ H+ KVLRL+ ++V L N +G G IQ + + + V LE+L +
Sbjct: 17 KILGDDVKHIYKVLRLNEGEKVVLNNCEGKEYLGEIQSVGKQEVIVNILEELS--TNNES 74
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
+ N+ G KG + D +V+K TELG + P++T+ + + G+ L I
Sbjct: 75 RVNITLFQGLPKGQKMDLIVQKGTELGIKEFVPIITD-RVDVKLKGEFKKLE---RLNRI 130
Query: 175 ANSAFVYGGQ----RLHEMV-----LNPPMKIDGLL-PLVSQSKLAFVA-IAEATPLVTA 223
A A + + E+V LN ++D +L P + F + + E +
Sbjct: 131 ALEAAKQSKRSIIPNVREVVEFNEALNELQRLDLILVPYENAENFGFKSLVKELSDKNVD 190
Query: 224 LSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA 271
L+S N +++GPEG F E E+ + GA + LG LR ETA
Sbjct: 191 LNSIENIG---VVIGPEGGFEESEIETLKHKGAYIITLGNRILRTETA 235
>gi|153003145|ref|YP_001377470.1| 16S ribosomal RNA methyltransferase RsmE [Anaeromyxobacter sp.
Fw109-5]
gi|152026718|gb|ABS24486.1| protein of unknown function DUF558 [Anaeromyxobacter sp. Fw109-5]
Length = 246
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 98/229 (42%), Gaps = 11/229 (4%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++ VLRL VE+F+G+GG R+D + + L + + + + AA
Sbjct: 27 YLRDVLRLGPGAEVEVFDGRGG---AWAARVD-AAYEALLLGERRAQGGAAAEIWLVAAL 82
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
KG + D +V+K TELGA V P E + R D G + +A G
Sbjct: 83 A--KGEKMDLVVQKATELGAAGVAPFAAERSV-VRLEPDKGEERARRWRRIAEEAARQCG 139
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGD 242
+ E+ P + G+L + LA +A+ P V AL + IVGPEG
Sbjct: 140 RADVPEV--RAPAPLAGVLAALPPGALA-IALQPGGPPVLALEPVAARAYA-AIVGPEGG 195
Query: 243 FTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLCSDSQQMPIP 291
T+ E+ AGA LGP LR ETA I +A L P+P
Sbjct: 196 LTDVELAACDAAGARRAALGPRVLRAETAAIVAVALLQARFGDLGAPVP 244
>gi|333394998|ref|ZP_08476817.1| 16S ribosomal RNA methyltransferase RsmE [Lactobacillus
coryniformis subsp. coryniformis KCTC 3167]
gi|420144911|ref|ZP_14652390.1| Hypothetical protein A11Y_171525 [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398403468|gb|EJN56710.1| Hypothetical protein A11Y_171525 [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 252
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 102/249 (40%), Gaps = 41/249 (16%)
Query: 51 GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVL 110
GG V + G+ H+ +V+R D++E+ G I+ + G+ V L D L
Sbjct: 13 GGQVTITGESARHIQRVMRAQVGDQLEVVTGDRRAYRSKIEALQPDGVSV-HLADTALTS 71
Query: 111 PQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFY 170
P+ V A K +ADW+V+K TELGA +GF+ +
Sbjct: 72 PELPN-QVIIACSIAKKDKADWIVQKGTELGA-------------------SGFIFFSSQ 111
Query: 171 YGFIANSAFVYGGQ--RLHEMVLN----------PPMKI-DGLLPLVSQSK-LAFVAIAE 216
YG + RL ++ L P + I GL L +K VA E
Sbjct: 112 YGVAKWEPARQAKKLTRLRKIALEAARQSHRDQIPTVDIMAGLTELTQVTKDFGIVAYEE 171
Query: 217 ATPL--VTALSSSRNESSG----LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
+ AL ++ + G + + GPEG EV ++ +A GLGP LR ET
Sbjct: 172 SAKQGETAALVATAQQLVGGQTLIAVFGPEGGLAPTEVEQLRQADFNVAGLGPRILRAET 231
Query: 271 ATIALLATL 279
A + LL+ L
Sbjct: 232 APLYLLSAL 240
>gi|187251700|ref|YP_001876182.1| hypothetical protein Emin_1295 [Elusimicrobium minutum Pei191]
gi|186971860|gb|ACC98845.1| Conserved hypothetical protein [Elusimicrobium minutum Pei191]
Length = 230
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 108/234 (46%), Gaps = 22/234 (9%)
Query: 44 IPRFFSQ--GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVV 101
+P++ ++ G + GDE H+ V+R + D +++F+G+G I+ + + D+V
Sbjct: 1 MPQYIAEITGERFLITGDEAKHLFCVMRAAEGDNIKIFDGRGKKFNAVIKEVAK---DIV 57
Query: 102 ALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTEL--HLQSRKI 159
+ + + +N+ F + + + +++KCT+LG S P++TE H +K
Sbjct: 58 VGSVISEIALRPLPYNLTLCFAPVDKSKTEEILDKCTQLGVSSFLPVITERTEHDILKKW 117
Query: 160 GDNGFLSCNFYYGFI--ANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA 217
+ + +AFV L P K + L + ++ +A+ E
Sbjct: 118 ENKKERWEQIIIAAVKQCETAFVPR--------LLAPQKFEQALKIPGKTIIAY----EK 165
Query: 218 TPLVTALSSSRNESSGL-IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
V+ S+ + E + I +GP G F+ +EV + V GA V LG + +R ET
Sbjct: 166 ENSVSLSSAVKGEEKAIKIFIGPAGGFSPREVEEAVLQGAVLVTLGVNIMRAET 219
>gi|51473368|ref|YP_067125.1| 16S ribosomal RNA methyltransferase RsmE [Rickettsia typhi str.
Wilmington]
gi|383752143|ref|YP_005427243.1| 16S ribosomal RNA methyltransferase RsmE [Rickettsia typhi str.
TH1527]
gi|383842979|ref|YP_005423482.1| 16S ribosomal RNA methyltransferase RsmE [Rickettsia typhi str.
B9991CWPP]
gi|51459680|gb|AAU03643.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington]
gi|380758786|gb|AFE54021.1| 16S ribosomal RNA methyltransferase RsmE [Rickettsia typhi str.
TH1527]
gi|380759626|gb|AFE54860.1| 16S ribosomal RNA methyltransferase RsmE [Rickettsia typhi str.
B9991CWPP]
Length = 240
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 103/248 (41%), Gaps = 24/248 (9%)
Query: 40 SRGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
+R I ++ + + D ++ VLRL ND + +FNG G I +I + +
Sbjct: 4 NRIYINSHLAENSKIELVRDNVHYVKTVLRLKINDSLRIFNGSDGEFLAHITKIGKNNIS 63
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
VV E LK + + + A +K + ++ T+LG + PL+T Q + +
Sbjct: 64 VVLTEQLK---KAYIEPALTLAVAIIKSDKLMLIINMATQLGITKIIPLITS-RCQFKTV 119
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
+ C V E LNPP+ I+ + L K I A
Sbjct: 120 NIERLIKC------------VIEATEQSER-LNPPI-IEHAITLKDYLKKNNNLILYANE 165
Query: 220 LVTALSSSRNESSGL-----IIVGPEGDFTEKEVNKI-VEAGATAVGLGPHRLRVETATI 273
+S SS L II+GPEG FT E+ + + ++ LG + LR ETA I
Sbjct: 166 HEKVKNSILRISSLLANDIAIIIGPEGGFTNDELELLALYKNTQSISLGSNILRTETAAI 225
Query: 274 ALLATLML 281
++A + L
Sbjct: 226 TVIAQVRL 233
>gi|323141893|ref|ZP_08076754.1| RNA methyltransferase, RsmE family [Phascolarctobacterium
succinatutens YIT 12067]
gi|322413640|gb|EFY04498.1| RNA methyltransferase, RsmE family [Phascolarctobacterium
succinatutens YIT 12067]
Length = 247
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 109/243 (44%), Gaps = 17/243 (6%)
Query: 44 IPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVAL 103
+P+ +++ + +EG + H++KVLR+ ++++ + G I ID + V L
Sbjct: 6 VPQLYNE--TMTIEGVDARHISKVLRMQPGAQLQIVSDDGVSALAEISAIDSECVTVHCL 63
Query: 104 EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNG 163
E KL + A G KG + +++++K E+GA SV P+ E H R G
Sbjct: 64 E--KLAESHEPAVRLILAQGLAKGEKMEFIIQKAVEMGAYSVVPVAME-HSVVRLDGAKA 120
Query: 164 FLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTA 223
+ IA SA ++ ++ + + +++ + A IA +
Sbjct: 121 AKKVERWQK-IAESA----AKQSKRDIIPEVQPVQTMAQMLAANDCATKIIAYECEDKKS 175
Query: 224 LSSSRNESSG-------LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALL 276
L ++ E+ L+I+GPEG +E E+ AGA V LG LR ETA + +
Sbjct: 176 LKAALKEAQAKGALTDLLLIIGPEGGISEAELETARAAGAVPVSLGRRILRAETAGLVAI 235
Query: 277 ATL 279
+ +
Sbjct: 236 SAI 238
>gi|332535117|ref|ZP_08410927.1| ribosomal RNA small subunit methyltransferase E [Pseudoalteromonas
haloplanktis ANT/505]
gi|332035435|gb|EGI71933.1| ribosomal RNA small subunit methyltransferase E [Pseudoalteromonas
haloplanktis ANT/505]
Length = 244
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 113/246 (45%), Gaps = 19/246 (7%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+P + I V ++ D H+ +VLR+ + V +FNG+GG I + + +
Sbjct: 3 VPHIYQTSSIALNTPVTLDDDAAGHIGRVLRMKVGEHVSIFNGEGGEYLSEIIEVTKKTV 62
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTL--KGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
V+ LE + P + + G +G + D+ ++K ELG +TP+ ++
Sbjct: 63 VVMPLE----LNPHDVESPLKIHLGQCVSRGDKMDFTIQKSVELGITEITPIFSQ-RCGV 117
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS-KLAFVAIA 215
+ +GD + + IA +A G+ +++PP+ + L + + KL A
Sbjct: 118 KLMGDR-LEKKHQQWQKIAIAAAEQSGRNFVP-IIHPPIDLKQWLAQQTDAIKLTLHPRA 175
Query: 216 EATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIAL 275
E + + ++ ++ +VGPEG FT+ E+ + + LGP LR ETA + +
Sbjct: 176 EHS--IKTITVPKDGVR--FLVGPEGGFTDDEMALTKQLEFVDIRLGPRVLRTETAALTV 231
Query: 276 LATLML 281
L+ L L
Sbjct: 232 LSALQL 237
>gi|319940233|ref|ZP_08014585.1| YqeU [Streptococcus anginosus 1_2_62CV]
gi|319810535|gb|EFW06871.1| YqeU [Streptococcus anginosus 1_2_62CV]
Length = 246
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 106/245 (43%), Gaps = 28/245 (11%)
Query: 53 IVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQ 112
I+R + D HM V+RL +D V L + E I+R+ R + +L LP
Sbjct: 15 IIR-DKDTLKHMFSVMRLVEDDEVVL------VFEDGIKRLARVSDRERHVLNLVEELPD 67
Query: 113 HTQW--NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFY 170
+ + +V A G KG + +W+ +K TELGA ++ ++ + +
Sbjct: 68 NAELPIHVTVASGFPKGDKLEWVAQKTTELGAAAIWAFPSDWSVAK-------WDGKKLA 120
Query: 171 YGFIANSAFVYGGQRLHEMVLNPPM-----KIDGLLPLVSQSKLAFVAI------AEATP 219
V G + L P + K+D L +SQ VA E+
Sbjct: 121 KKADKLEKIVLGAAEQSKRNLIPEVRLFEKKVD-FLDCLSQFDCVIVAYEESAKEGESAA 179
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
LV A++ + S L + GPEG + E+ + EAGA GLGP LR ETA + L+ +
Sbjct: 180 LVKAVTGLKKGSRILFVFGPEGGLSPAEIATLEEAGAILAGLGPRILRTETAPLYALSAV 239
Query: 280 MLCSD 284
+ ++
Sbjct: 240 SVLTE 244
>gi|90409107|ref|ZP_01217229.1| hypothetical protein PCNPT3_05034 [Psychromonas sp. CNPT3]
gi|90309781|gb|EAS37944.1| hypothetical protein PCNPT3_05034 [Psychromonas sp. CNPT3]
Length = 275
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 116/274 (42%), Gaps = 18/274 (6%)
Query: 12 FVQFLNRPSLKPLSLRAFSSSSSDYANQSRGGIPRFFS-QGGIVRVE---GDEFWHMTKV 67
F + +N+ +L P+ + S + + R PRF+ Q + E D V
Sbjct: 6 FTRIINKKNLSPIFIYNHLLPSINRHSIMR--YPRFYDPQSFSLHNEFELADNVAQHIHV 63
Query: 68 LRLSTNDRVELFNGKGGLIEGCIQRIDRTG--LDVVALEDLKLVLPQHTQWNVFAAFGTL 125
LRL + LFNG GG + + + + + A P H +
Sbjct: 64 LRLKEGLNIILFNGLGGQFTATLINVKKRSCTVKITAFTQTDNESPLHLHLGQVIS---- 119
Query: 126 KGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQR 185
+G R +++++K ELG +TPLL+E K+ + + IA +A G+
Sbjct: 120 RGERMEFIIQKSVELGVNEITPLLSER--CGVKVNVERMAKKHQQWQKIAIAACEQSGRN 177
Query: 186 LHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTE 245
+ +V +PP ++ +QS A L++ + N S+ +++GPEG ++
Sbjct: 178 IVPIV-HPPQQMQQW---CTQSTDALQLTLHPRALLSIKTLPDNISNIRLLIGPEGGLSD 233
Query: 246 KEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
E+N T LGP LR ETAT+ ++ L
Sbjct: 234 GEINLTKTLNFTETLLGPRVLRTETATLTAISAL 267
>gi|322417811|ref|YP_004197034.1| hypothetical protein GM18_0269 [Geobacter sp. M18]
gi|320124198|gb|ADW11758.1| protein of unknown function DUF558 [Geobacter sp. M18]
Length = 246
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 96/235 (40%), Gaps = 17/235 (7%)
Query: 52 GIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV-VALEDLKLVL 110
G V G+ + HM +VLRL VEL + G G I+ + L V + +
Sbjct: 14 GEATVTGELYRHMARVLRLKQGAEVELIDADGRRHAGVIEEVGAKALTVRITVSSAPPRE 73
Query: 111 PQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFY 170
Q ++ G KG + D +++KCTELG V + K+ S
Sbjct: 74 EPGLQVTLYQ--GLPKGEKLDLILQKCTELGVAEVVTF--DAARSVVKLRGEKTASKQAR 129
Query: 171 YGFIANSAFVYGGQRLHEMVLNPP-MKIDGLLPLVSQS-----KLAFVAIAEATPLVTAL 224
Y I A G+ PP + I G L V + KL E T L L
Sbjct: 130 YEKIVQEAARQSGR------CTPPRVAIGGTLKEVLKDAGHTVKLLLWEGEEKTTLRDCL 183
Query: 225 SSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
S ++VGPEG + +EV + + G T V LG LR ETA +A+++ L
Sbjct: 184 GKYEAPESVAVVVGPEGGLSAEEVEQALACGFTPVTLGKRILRTETAGLAMISIL 238
>gi|417858997|ref|ZP_12504054.1| hypothetical protein Agau_C101995 [Agrobacterium tumefaciens F2]
gi|338825001|gb|EGP58968.1| hypothetical protein Agau_C101995 [Agrobacterium tumefaciens F2]
Length = 245
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 100/211 (47%), Gaps = 14/211 (6%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
++F ++ VLR+S + LFNG+ G + + R + ++ +E + PQ ++
Sbjct: 27 EQFNYLANVLRMSDGAEILLFNGRDGEWKARLSFPSRKKITLIPVEQTR---PQPPAADL 83
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSA 178
F LK GR D+LV+K E+GA + P++T+ H+Q KI + L N +A
Sbjct: 84 HYLFAPLKVGRMDYLVQKAVEMGAGLLQPMMTQ-HVQG-KIHNTEKLRAN-----AIEAA 136
Query: 179 FVYGGQRLHEMVLNPPMKIDGLLPLVSQS-KLAFVAIAEATPLVTALSSSRNESSGLIIV 237
G L ++ P+K+ +L ++ + +A + S E ++V
Sbjct: 137 EQCGILSLPDVA--EPVKLKDMLETWPHDRRIIYCDEGDAGQNPLPVLQSVRERKLALLV 194
Query: 238 GPEGDFTEKEVNKIVE-AGATAVGLGPHRLR 267
GPEG F+E+E + A T + LGP LR
Sbjct: 195 GPEGGFSEEERELLRSLAFVTPIPLGPRILR 225
>gi|303232126|ref|ZP_07318829.1| RNA methyltransferase, RsmE family [Veillonella atypica
ACS-049-V-Sch6]
gi|302513232|gb|EFL55271.1| RNA methyltransferase, RsmE family [Veillonella atypica
ACS-049-V-Sch6]
Length = 243
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 81/160 (50%), Gaps = 13/160 (8%)
Query: 125 LKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNF--YYGFIANSAFVYG 182
LKG + +W+++K TEL +V + T + D L + + + ++ G
Sbjct: 82 LKGEKLEWVLQKATELNVDTVYLVPTSNCVAKY---DAKKLQSKYSRWEKIMLEASQQCG 138
Query: 183 GQRLHEMVLNPPMK--ID---GLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIV 237
+L +V++ P+ +D L LV+ A I +A + + S++R+ LI +
Sbjct: 139 RTQLPTLVVDEPLSNVLDIESECLKLVAYENEAGYTIKDALKAINSDSTNRD---ILICI 195
Query: 238 GPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
GPEG F EKE+N I+E G +V LG LR ETA IA L+
Sbjct: 196 GPEGGFQEKEINDIIECGGQSVALGHTILRAETAAIAALS 235
>gi|103487756|ref|YP_617317.1| 16S ribosomal RNA methyltransferase RsmE [Sphingopyxis alaskensis
RB2256]
gi|98977833|gb|ABF53984.1| protein of unknown function DUF558 [Sphingopyxis alaskensis RB2256]
Length = 249
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 104/256 (40%), Gaps = 49/256 (19%)
Query: 45 PRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQ-------- 91
PR F G ++G ++ V+RL D V LF+ + G +
Sbjct: 13 PRLFIDQPLGAGSAPVIDGAAAHYLLGVMRLKAGDPVLLFDNRSGEWLAVVADAAKRSVT 72
Query: 92 -RIDRTGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLT 150
RI+R D+ A+ DL L F +K R DW++EK TELG + + P++T
Sbjct: 73 LRIERHMRDIEAVPDLWLC------------FAPVKKARLDWIIEKATELGVRRLQPVMT 120
Query: 151 ELHLQSR----KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLL-PLVS 205
E + R ++ +C G A A L P+K+ LL +
Sbjct: 121 ERTIVERVRRERLEAQIIEACE-QCGRTALPA------------LAEPVKLPQLLKAWPA 167
Query: 206 QSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGAT-AVGLGPH 264
+ L F A P ++ + I+ GPEG FT++E + A + LGP
Sbjct: 168 ERALLFADEAGGVP----MARLAAPAPAAILTGPEGGFTDRERALLAAHPAVHRLALGPR 223
Query: 265 RLRVETATIALLATLM 280
LR ETA IA + M
Sbjct: 224 ILRAETAAIAATSLWM 239
>gi|167757694|ref|ZP_02429821.1| hypothetical protein CLOSCI_00024 [Clostridium scindens ATCC 35704]
gi|167664576|gb|EDS08706.1| RNA methyltransferase, RsmE family [Clostridium scindens ATCC
35704]
Length = 245
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 112/243 (46%), Gaps = 24/243 (9%)
Query: 50 QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLV 109
+G + +EG + HM VLR+ + V + +G L C+ G V+A++
Sbjct: 12 EGERIYIEGSDVNHMKNVLRMRPGEAVAISDGDN-LKYRCVVEGYEEGRAVLAIQQR--- 67
Query: 110 LPQHTQW--NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
+P T+ + G K + + +V+K ELGA V P+ T + K+ +
Sbjct: 68 MPVDTELPCRIILFQGLPKQDKMELIVQKAVELGASQVVPVATRRSVV--KLDEKKAAKK 125
Query: 168 NFYYGFIANSAFVYGGQRL---------HEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT 218
+ IA SA G+ ++ L ++D LL ++ + EA
Sbjct: 126 LQRWQQIAESAAKQAGRGYIPQVSSVLSYQEALEKAGELDVLLIPYELAE----GMEEAR 181
Query: 219 PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
+V +++ + +S G I +GPEG F ++EV+ + GA A+ LG LR ETA +A+L+
Sbjct: 182 KVVASIA--QGQSVG-IFIGPEGGFEKEEVDAAIRQGAKAITLGRRILRTETAGLAILSI 238
Query: 279 LML 281
LM
Sbjct: 239 LMF 241
>gi|334366448|ref|ZP_08515380.1| RNA methyltransferase, RsmE family [Alistipes sp. HGB5]
gi|313157414|gb|EFR56837.1| RNA methyltransferase, RsmE family [Alistipes sp. HGB5]
Length = 237
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 91/219 (41%), Gaps = 21/219 (9%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRID----RTGLDVVALEDLKLVLPQHT 114
+E H +VLRL D + + +G+G L C + D R + V LP
Sbjct: 19 EESKHCVRVLRLGRGDTLHITDGRGNLF--CCEITDDNPKRCTVRVTETRAGWEALPYSL 76
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
A T R +W +EK TE+G ++ PL TE H + R G
Sbjct: 77 ---TMAVAPTKNADRFEWFLEKATEVGVGTIIPLETE-HCERRVFKPE--------RGER 124
Query: 175 ANSAFVYGGQRLHEMVLNP--PMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSS-RNES 231
+A + + + L P P +P + +A A A++ L ++ R
Sbjct: 125 VITAAMKQSLKAYRPTLRPLTPFGEAAAMPFEGRKFIAHCAPAQSPEGKAYLPATLRRGE 184
Query: 232 SGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
+ LI++GPEGDF+ +E+ G + LG RLR ET
Sbjct: 185 AALILIGPEGDFSPEEIAFARANGFEEITLGAQRLRTET 223
>gi|253681363|ref|ZP_04862160.1| conserved surface protein [Clostridium botulinum D str. 1873]
gi|253561075|gb|EES90527.1| conserved surface protein [Clostridium botulinum D str. 1873]
Length = 251
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 113/246 (45%), Gaps = 25/246 (10%)
Query: 46 RFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALED 105
+ FS I+ EG++ H+ KVLRL ++V + N G G I ID+T ++V L++
Sbjct: 10 KIFSDLSII--EGEDVKHIYKVLRLKEGEKVNINNCNGKEFLGIIDYIDKTKVEVKLLKE 67
Query: 106 LKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLT--------ELHLQSR 157
L+ + V+ G K + D + +KCTELG + +TP++T ++ +S+
Sbjct: 68 LE--VNNEPPIEVYLFQGLPKSTKMDLITQKCTELGVKDITPIVTSRVSSSINDIKRESK 125
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI--A 215
K+ + IA A +R V+N + + L V A
Sbjct: 126 KLD---------RWNRIAFEA-CKQNKRTLIPVVNDIIDFHEFTDKLKDMDLIVVPYENA 175
Query: 216 EATPLVTALSSSRNESSGL-IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274
E + ++E + I++GPEG F E+E+ + GA V LGP LR ETA
Sbjct: 176 ENYGIKQMTRGLKSEVKKIAIVIGPEGGFEEEEITSLKNMGAHIVTLGPRILRTETAGFT 235
Query: 275 LLATLM 280
LA LM
Sbjct: 236 CLALLM 241
>gi|359442827|ref|ZP_09232686.1| 16S rRNA (uracil1498-N3)-methyltransferase [Pseudoalteromonas sp.
BSi20429]
gi|392533385|ref|ZP_10280522.1| 16S ribosomal RNA methyltransferase RsmE [Pseudoalteromonas arctica
A 37-1-2]
gi|358035326|dbj|GAA68935.1| 16S rRNA (uracil1498-N3)-methyltransferase [Pseudoalteromonas sp.
BSi20429]
Length = 244
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 113/246 (45%), Gaps = 19/246 (7%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+P + I V ++ D H+ +VLR+ + V +FNG+GG I + + +
Sbjct: 3 VPHIYQTSSIALNTPVTLDDDAAGHIGRVLRMKVGEHVSIFNGEGGEYLSEIIEVTKKTV 62
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTL--KGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
V+ LE + P + + G +G + D+ ++K ELG +TP+ ++
Sbjct: 63 VVMPLE----LNPHDVESPLKIHLGQCVSRGDKMDFTIQKSVELGITEITPIFSQ-RCGV 117
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS-KLAFVAIA 215
+ +GD + + IA +A G+ +++PP+ + L + + KL A
Sbjct: 118 KLMGDR-LEKKHQQWQKIAIAAAEQSGRNFVP-IIHPPVDLKQWLAQQTNAIKLTLHPRA 175
Query: 216 EATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIAL 275
E + + ++ ++ +VGPEG FT+ E+ + + LGP LR ETA + +
Sbjct: 176 EHS--IKTITVPKDGVR--FLVGPEGGFTDDEMALTKQLEFVDIRLGPRVLRTETAALTV 231
Query: 276 LATLML 281
L+ L L
Sbjct: 232 LSALQL 237
>gi|296333298|ref|ZP_06875751.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305675197|ref|YP_003866869.1| methylase of U1498 in 16S rRNA [Bacillus subtilis subsp. spizizenii
str. W23]
gi|296149496|gb|EFG90392.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305413441|gb|ADM38560.1| methylase of U1498 in 16S rRNA [Bacillus subtilis subsp. spizizenii
str. W23]
Length = 256
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 101/237 (42%), Gaps = 25/237 (10%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE--DLKLVLPQH 113
V G++ H+ V+R++ D++ + G + +Q + + + + +E D LP
Sbjct: 21 VTGEDVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSKDNVSCLVVEWTDENRELP-- 78
Query: 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGF 173
V+ A G KG + +W+++K TELGA + P +R +
Sbjct: 79 --IKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQA-----ARSVVKLDDKKAKKKRER 131
Query: 174 IANSAFVYGGQRLHEMVLNPPMKID-----GLLPLVSQSKLAFVAIAEATPL--VTALSS 226
A A Q V P +D LL + VA E++ ++A S+
Sbjct: 132 WAKIAKEAAEQSYRNEV---PQVMDVHSFQQLLQRMQDFDKCVVAYEESSKKGEISAFSA 188
Query: 227 SRNE----SSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
SS LI+ GPEG TE EV ++ E + GLGP LR ETA + L+ +
Sbjct: 189 VVRRLPKGSSLLIVFGPEGGLTEAEVERLTEKDSMPCGLGPRILRTETAPLYALSAI 245
>gi|427402892|ref|ZP_18893889.1| RsmE family RNA methyltransferase [Massilia timonae CCUG 45783]
gi|425718698|gb|EKU81645.1| RsmE family RNA methyltransferase [Massilia timonae CCUG 45783]
Length = 241
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 101/233 (43%), Gaps = 14/233 (6%)
Query: 44 IPRFFS----QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRID--RTG 97
+PRF+ G+ + H V+RL + LFNG+GG + R
Sbjct: 1 MPRFYCPQPLAAGLTVDLPEAVAHHLHVVRLQPGATLTLFNGEGGQYRATLSESGKRRAT 60
Query: 98 LDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
V A ED++ T ++V A G +G + DW+VEK ELG ++ PL + + R
Sbjct: 61 ATVDAFEDVE----AETPYSVTLAQGLPEGSKMDWIVEKAVELGVTAIQPLAAQRSV-VR 115
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA 217
G+ + G I ++ G RL L+P +++ L + + A
Sbjct: 116 LAGERLDKRQAHWQGVIVAASEQCGRNRLAR--LHPLLEVQPWL-TAPADGVRILLSPRA 172
Query: 218 TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
T + + + + ++GPEG T +E V AGA ++ +GP LR ET
Sbjct: 173 TESLAGWARANTPQAVTFLIGPEGGLTPQEEAAAVAAGALSLSMGPRVLRTET 225
>gi|378825047|ref|YP_005187779.1| RNA methyltransferase [Sinorhizobium fredii HH103]
gi|365178099|emb|CCE94954.1| RNA methyltransferase [Sinorhizobium fredii HH103]
Length = 245
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 95/214 (44%), Gaps = 20/214 (9%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
++F ++ VLR + +FNG+ G + R L + A E + PQ ++
Sbjct: 27 EQFNYLVNVLRFGEGSSILVFNGRDGEWRAELSLPSRKQLVLTAGEQTR---PQPAPCDL 83
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGF----I 174
F LK GR D+LV+K E+GA + P++T+ H+Q K+G+ L N +
Sbjct: 84 IYLFAPLKIGRLDYLVQKAVEMGAGVLQPVMTQ-HVQG-KLGNPDRLRANVIEAAEQCGV 141
Query: 175 ANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGL 234
V ++L E++ N P + ++ F + + S +E
Sbjct: 142 LGIPSVEAPRKLEELLANWP----------RERRIIFCDEGNESQNPLPILSEISERRLA 191
Query: 235 IIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLR 267
+++GPEG F+E E + TAV LGP LR
Sbjct: 192 LLIGPEGGFSEAERALLRSLDFVTAVPLGPRILR 225
>gi|149186955|ref|ZP_01865263.1| hypothetical protein ED21_24936 [Erythrobacter sp. SD-21]
gi|148829344|gb|EDL47787.1| hypothetical protein ED21_24936 [Erythrobacter sp. SD-21]
Length = 239
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 102/240 (42%), Gaps = 21/240 (8%)
Query: 45 PRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PR F G IV +EG++ ++ +V+R+ D V L + G I R+ G
Sbjct: 13 PRLFVSDELGTGRIVCIEGNQANYLARVMRVGKGDAVILCDDVTG---EWIARVTEAGKR 69
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
V L+ + P+ + + LK R D ++EK TELG ++ P++T + +
Sbjct: 70 RVELKVEDHLRPREEVPDFWLCPALLKKDRFDVVLEKSTELGVAAIHPVITRRCVADKLN 129
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAE-AT 218
G+ A +A + P+K+D LL + ++ F A E
Sbjct: 130 GERASTIVTEAAEQCARTALPQVAE---------PVKLDALLRDWPEDRILFFADEEGGE 180
Query: 219 PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKI-VEAGATAVGLGPHRLRVETATIALLA 277
P A + + ++ GPEG F + E I A + LGP LR ETA +A +A
Sbjct: 181 PAADAFCYA--DGPAALLTGPEGGFDDAERAAIRAHPAARPISLGPRILRGETAALAGIA 238
>gi|88798495|ref|ZP_01114079.1| hypothetical protein MED297_05539 [Reinekea blandensis MED297]
gi|88778595|gb|EAR09786.1| hypothetical protein MED297_05539 [Reinekea sp. MED297]
Length = 245
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 93/221 (42%), Gaps = 13/221 (5%)
Query: 61 FWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLV-LPQ-HTQWNV 118
F H+ KVLRL +++FNG+G + + + LE L PQ HT +
Sbjct: 27 FQHLIKVLRLKDGADIQVFNGRGDRFRAELTEVGKKQASARLLEQLDATPEPQLHTHLGL 86
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSA 178
+ KG R D+ ++K TELG S+TPL +E H R + + G I ++
Sbjct: 87 VMS----KGDRFDYALQKATELGVTSITPLTSE-HCDLRLNAERQTKKMAHWQGVIESAC 141
Query: 179 FVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVG 238
R +L P + + + + A P S S ++G
Sbjct: 142 --EQCYRDTVPILYPVRALRDWVEIQDSDVQLILHTAAQAPDWPEESP----QSVSFLIG 195
Query: 239 PEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
PEG ++ EV ++ + LGP LR ETA + +L+ L
Sbjct: 196 PEGGLSDDEVQWSLKNDFMSWQLGPRILRTETAPVVMLSLL 236
>gi|160880435|ref|YP_001559403.1| hypothetical protein Cphy_2303 [Clostridium phytofermentans ISDg]
gi|160429101|gb|ABX42664.1| protein of unknown function DUF558 [Clostridium phytofermentans
ISDg]
Length = 246
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 111/243 (45%), Gaps = 31/243 (12%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGC--IQRIDRTGLDVVALEDLKLVLP 111
+R+EG + H+ VLR+ +++ +G+G I+ C I ++ + + E K
Sbjct: 16 IRIEGADVNHIKNVLRMKIGEKLIACDGQG--IDYCCIIAEFEKDNIILSISERKKTDTE 73
Query: 112 QHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLL---TELHLQSRKIGDNGFLSCN 168
+ +F G K + + +V+K ELGA + P++ T + L+ +K
Sbjct: 74 LPAKLILFQ--GLPKKDKMELIVQKAVELGAYEIVPVMMKRTIVKLEDKKKEQKKLER-- 129
Query: 169 FYYGFIANSAFVYGGQ----RLHEMVLNPPMKIDGLLPLVSQSKLAFV------AIAEAT 218
+ IA A G+ R+HE+V + + S+ L+ + I E
Sbjct: 130 --WQAIAEGAAKQSGRGFIPRVHEIV-----SYQEAIKMASECDLSILPYECASGINETR 182
Query: 219 PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
L+ + S+ + S I++GPEG F E EV+ E G V LG LR ETA + +L+
Sbjct: 183 ALI---NQSKGKDSIGIMIGPEGGFAEDEVDLAKEHGIIPVTLGKRILRTETAGLTILSY 239
Query: 279 LML 281
LML
Sbjct: 240 LML 242
>gi|297170744|gb|ADI21766.1| uncharacterized protein conserved in bacteria [uncultured gamma
proteobacterium HF0130_22O14]
Length = 246
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 103/229 (44%), Gaps = 15/229 (6%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQH 113
+ + G++ ++T+VLRL T DR+ LF+G G I R L ++ LE+ + +
Sbjct: 21 LEIAGEQSHYVTRVLRLQTGDRMILFDGSGSEWTAKIIDTKRNRL-LLELEE-RATPDRE 78
Query: 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLL---TELHLQSRKIGDNGFLSCNFY 170
+ N+ + R D +++K TELG + P+ T + + KI N +
Sbjct: 79 SPINLTLIQSISRSQRMDLVMQKSTELGVTRIVPVFSTNTIVKMNEDKIEKK----INHW 134
Query: 171 YGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNE 230
+ +++ G ++ +++ P++++ +S L+ A N
Sbjct: 135 RNILISASEQSGRTKIPDLI--SPIQLETECLKRYKSDLSIFYDTTGKDSYDA----NNP 188
Query: 231 SSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
++GPEG FTE E ++AG + GP LR ETA I L+ L
Sbjct: 189 KDITAVIGPEGGFTEDEKQIAIDAGYMVMQSGPRLLRTETAPIMALSIL 237
>gi|328545108|ref|YP_004305217.1| hypothetical protein SL003B_3491 [Polymorphum gilvum SL003B-26A1]
gi|326414850|gb|ADZ71913.1| Hypothetical conserved protein [Polymorphum gilvum SL003B-26A1]
Length = 252
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 107/233 (45%), Gaps = 24/233 (10%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
+ GG V + + ++ VLRL+ +DRV +FNG+ G + I G L ++
Sbjct: 17 LADGGQVEADRAQANYLLNVLRLADDDRVLVFNGRDG---EWLAEIAAAGRKACTLRLVE 73
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
PQ Q ++ F LK R D++V+K E+GA ++ P++T H + +I +
Sbjct: 74 RTRPQTPQPDLHYLFAPLKHARLDYMVQKAVEMGAGALRPVMTR-HTHASRI------NL 126
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS----KLAFVAIAEA--TPL- 220
+ +A G L ++ P +D +L Q+ +L F E +PL
Sbjct: 127 ERMEANVVEAAEQCGVISLPDV--RAPAALDAVLAAWPQADAGRRLLFCDEGEESHSPLP 184
Query: 221 VTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAG---ATAVGLGPHRLRVET 270
V A + S ++VGPEG F+++E + + G + LGP LR +T
Sbjct: 185 VLARLAGEGPSPLALLVGPEGGFSKEE--RALLRGLPFVVPIPLGPRILRADT 235
>gi|398350373|ref|YP_006395837.1| hypothetical protein USDA257_c04840 [Sinorhizobium fredii USDA 257]
gi|390125699|gb|AFL49080.1| hypothetical protein USDA257_c04840 [Sinorhizobium fredii USDA 257]
Length = 245
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 100/216 (46%), Gaps = 24/216 (11%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
++F ++ VLRL + + LFNG+ G + R L + A E + PQ ++
Sbjct: 27 EQFNYLVNVLRLDESSSILLFNGRDGEWRAELSLPSRKHLVLTATEQTR---PQPAPSDL 83
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSA 178
F LK GR D+LV+K E+GA + P++T+ H+Q K+G+ L N A
Sbjct: 84 AYLFAPLKVGRLDYLVQKAVEMGAGVLQPVMTQ-HVQG-KLGNLDRLRANVIEA--AEQC 139
Query: 179 FVYG------GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESS 232
V G ++L E++ N P D + +S + P++ +S R
Sbjct: 140 GVLGIPEVETPRKLEELLANWPR--DRRIIFCDESNES----QNPLPILGGISERRLA-- 191
Query: 233 GLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLR 267
+++GPEG F+E E + TA+ LGP LR
Sbjct: 192 --LLIGPEGGFSEAERVLLRSLDFVTAIPLGPRILR 225
>gi|399908170|ref|ZP_10776722.1| hypothetical protein HKM-1_01846 [Halomonas sp. KM-1]
Length = 243
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 99/233 (42%), Gaps = 11/233 (4%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK 107
F+ GG V + H+ +VLRLS V LF+G G +E ++ VVA +
Sbjct: 13 FTVGGDVVLPEGPAHHLARVLRLSEGAPVRLFDGAG--LEARAVLVEAGRKRVVARVEAV 70
Query: 108 LVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC 167
+ V KG R D+ V+K ELG ++TPL TE H R G+
Sbjct: 71 EAGRGESPLAVHLGQAISKGDRMDYAVQKAVELGVAAITPLYTE-HGDVRLKGEREAKKL 129
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS-KLAFVAIAEATPLVTALSS 226
++ +A SA G+ + V +PP + L ++ +L E AL
Sbjct: 130 A-HWQAVAVSACEQCGRAVVPAV-HPPRPLAEWLDQRHEALRLVLHPGTE-----RALEQ 182
Query: 227 SRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
+++GPEG E EV AG + LGP LR ETA + L+ L
Sbjct: 183 VDTPVDAALLIGPEGGLAEAEVESAKAAGFAPLTLGPRILRTETAPVVALSLL 235
>gi|403384178|ref|ZP_10926235.1| hypothetical protein KJC30_05729 [Kurthia sp. JC30]
Length = 245
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 99/240 (41%), Gaps = 20/240 (8%)
Query: 50 QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLV 109
+ G V + GD+ H+T+V+R+ D + + + I+ ++ +V+ + + +
Sbjct: 11 KDGQVTLTGDDARHITRVMRMRAGDEIIVVECEETAHICAIESVEE---EVIVRQTGRTI 67
Query: 110 LPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI----GDNGFL 165
+V A G KG + D +V+K TELG ++ P +R I G
Sbjct: 68 ASPELPIHVTIACGLPKGDKLDLIVQKGTELGMYALQPFEA-----ARSIVKWDAKKGAK 122
Query: 166 SCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVA------IAEATP 219
+A R H ++ + L+ + FVA + E T
Sbjct: 123 KIERLQKIAKEAA--EQSHRTHIPTVHQSVSFAQLVKSCENYDVVFVADEEDAKVEERTR 180
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
LV L + S L+I GPEG +E + EAG LGP LR ETA + +L+ +
Sbjct: 181 LVDKLKKVYDCKSMLVIFGPEGGIAREEAEMLREAGVITTSLGPRILRAETAPLYMLSAI 240
>gi|333980036|ref|YP_004517981.1| Ribosomal RNA small subunit methyltransferase E [Desulfotomaculum
kuznetsovii DSM 6115]
gi|333823517|gb|AEG16180.1| Ribosomal RNA small subunit methyltransferase E [Desulfotomaculum
kuznetsovii DSM 6115]
Length = 256
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 103/235 (43%), Gaps = 20/235 (8%)
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDL---KLVL 110
V + G + H+++VLRL D + + +G+G +G R+ TG A+E + + +
Sbjct: 19 VTITGPDVMHISRVLRLGPGDVITVMDGRG---KG--YRVRLTGTTGTAVEGMILEQFIP 73
Query: 111 PQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSC 167
V G KG + D +++K TELG V PL + L K +
Sbjct: 74 GGEAPLKVTLVQGLSKGDKMDIIIQKGTELGVSCVVPLACRRSVVRLTPAKARER----- 128
Query: 168 NFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSS 227
+ IA A + + V M + +L L+S LA + E + ++
Sbjct: 129 QQRWQRIALEAAKQSCRAIVPRVTGV-MDLPAVLDLISPGALALMPWEEEREF-SLKAAL 186
Query: 228 RNESSG--LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
R +S G + +GPEG F EV E G +V LGP LR ETA +A L ++
Sbjct: 187 RGQSCGEVFVFIGPEGGFEADEVAMARERGVLSVSLGPRILRTETAGLATLTMVL 241
>gi|160872460|ref|ZP_02062592.1| conserved hypothetical protein [Rickettsiella grylli]
gi|159121259|gb|EDP46597.1| conserved hypothetical protein [Rickettsiella grylli]
Length = 241
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 104/234 (44%), Gaps = 13/234 (5%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCI-QRIDRTGLDVVALEDL 106
+ G I+ + + H+ +VLRL D +FNG+ G + I +RI T V L +
Sbjct: 12 LNTGQIISLSQEAAHHLIRVLRLQVGDECIIFNGQAGEFQATIIERIKTTAR--VKLGEF 69
Query: 107 KLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLS 166
+ + + + L + D+L++K ELG V PLLT H + D
Sbjct: 70 N-AINRESPLQITLVQAILHSDKMDYLLQKAVELGVTHVIPLLTA-HSTLKLTPDRWEKR 127
Query: 167 CNFYYGFIANSAFVYGGQRLHEMVLNPPMKID-GLLPLVSQSKLAFVAIAEATPLVTALS 225
+ G + + G R+ +L PM D ++ L +++++ A+ L
Sbjct: 128 YVHWQGVMRGACEQSGRTRIP--ILENPMTFDVAMMALKAETRIILQPAAKKM-----LH 180
Query: 226 SSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
S ++ +GPEG ++ E++ + G A+ +GP LR ETA + ++ L
Sbjct: 181 SLPFCQRVVLCIGPEGGWSLNELDSAQKMGFQAMKMGPRVLRSETAGVVAMSLL 234
>gi|381195645|ref|ZP_09902987.1| hypothetical protein AlwoW_00095 [Acinetobacter lwoffii WJ10621]
Length = 238
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 106/255 (41%), Gaps = 42/255 (16%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF + + V + F H KVLR + LFNG+GG E + + +
Sbjct: 1 MPRFFMEAELNVDHTVELTETVFHHWVKVLRAQVGETATLFNGQGGEYEVTLSDVAKKS- 59
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTL------KGGRADWLVEKCTELGAQSVTPLLTEL 152
AL + P N AF TL KG R D++++K ELG + LLT
Sbjct: 60 ---ALVQVTAFNPT----NRTPAFKTLLGQVMSKGDRMDYVIQKAVELGVSEIQ-LLTSE 111
Query: 153 HLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLP--------LV 204
+ R D + + G IA +A G + +L P+ ++ L ++
Sbjct: 112 RCEMRLKYDRDQKKIDHWQG-IAIAACEQCGMNIVPKIL-APLSLEKWLASELPATRLVL 169
Query: 205 SQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPH 264
+ +K +A ATP + +++GPEG +E E+ E G +G
Sbjct: 170 APNKEKIDVLAHATPNIA------------LLIGPEGGLSEAEITTANENGFINWCIGER 217
Query: 265 RLRVETATIALLATL 279
LR ETA + L+ L
Sbjct: 218 VLRTETAPVVALSIL 232
>gi|28211650|ref|NP_782594.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium tetani E88]
gi|28204092|gb|AAO36531.1| conserved surface protein [Clostridium tetani E88]
Length = 250
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 106/229 (46%), Gaps = 16/229 (6%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
++ H+ KVLRL+T D V + N +G G I ID+ + V E KL + + V
Sbjct: 21 EDVKHIYKVLRLTTEDEVIINNCEGEEFLGEISYIDKKEVIVNIKE--KLDINNESSIQV 78
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSA 178
+ G K + D +V+K ELG + +TP++TE + + G+ L + A
Sbjct: 79 YLFQGMPKANKMDLIVQKNCELGVREITPVITERVVVKQYGGEYKKLD------RLEKIA 132
Query: 179 FVYGGQRLHEMV--LNPPMKIDGLLPLVSQSKLAFVAIAEA-----TPLVTALSSSRNES 231
Q ++ +N P++ LL + L V L+T + ++
Sbjct: 133 IESSKQCKRTLIPKVNNPVEFKDLLEELKIMDLIVVPYENQQGFGMKKLITKIEKNKIIK 192
Query: 232 SGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
G +++GPEG F E E+ ++ + GA + LGP LR ETA ++ LM
Sbjct: 193 IG-VVIGPEGGFEEDEIEELEKIGANIITLGPRILRTETAGFTAVSLLM 240
>gi|218767503|ref|YP_002342015.1| 16S ribosomal RNA methyltransferase RsmE [Neisseria meningitidis
Z2491]
gi|385337351|ref|YP_005891224.1| hypothetical protein NMAA_0231 [Neisseria meningitidis WUE 2594]
gi|433470061|ref|ZP_20427467.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
98080]
gi|433476344|ref|ZP_20433678.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
88050]
gi|433480687|ref|ZP_20437966.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
63041]
gi|433514236|ref|ZP_20471019.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
63049]
gi|433516459|ref|ZP_20473220.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
2004090]
gi|433518434|ref|ZP_20475173.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
96023]
gi|433520604|ref|ZP_20477314.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
65014]
gi|433524839|ref|ZP_20481493.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
97020]
gi|433529022|ref|ZP_20485628.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
NM3652]
gi|433531195|ref|ZP_20487774.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
NM3642]
gi|433532079|ref|ZP_20488646.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
2007056]
gi|433535372|ref|ZP_20491902.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
2001212]
gi|433541790|ref|ZP_20498231.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
63006]
gi|121051511|emb|CAM07805.1| hypothetical protein NMA0528 [Neisseria meningitidis Z2491]
gi|319409765|emb|CBY90071.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594]
gi|432201028|gb|ELK57114.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
98080]
gi|432208022|gb|ELK64003.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
88050]
gi|432213410|gb|ELK69328.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
63041]
gi|432245724|gb|ELL01189.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
63049]
gi|432251015|gb|ELL06388.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
2004090]
gi|432251744|gb|ELL07107.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
96023]
gi|432251795|gb|ELL07157.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
65014]
gi|432257697|gb|ELL12992.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
97020]
gi|432263646|gb|ELL18859.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
NM3652]
gi|432264187|gb|ELL19392.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
NM3642]
gi|432268724|gb|ELL23891.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
2007056]
gi|432269842|gb|ELL24993.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
2001212]
gi|432275638|gb|ELL30708.1| RNA methyltransferase, RsmE family protein [Neisseria meningitidis
63006]
Length = 241
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 112/249 (44%), Gaps = 29/249 (11%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRF+ S G V + + H+ VLR+ N+ + LF+GKG + +++
Sbjct: 1 MPRFYLPENLSVGQTVALPDNIVRHLN-VLRVRPNENITLFDGKGKAHAAQLTVLEKRRA 59
Query: 99 DVVAL-EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
+ L ED + N+ G R D+ ++K ELG ++ P+++E + R
Sbjct: 60 EAEILHED---TTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCI-VR 115
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA 217
G+ + + ++ G + PP +LP++ + +E+
Sbjct: 116 LDGERAAKRLARWQEIVISACEQSGRNTV------PP-----VLPIIGYREALDKMPSES 164
Query: 218 TPLVTALSSSRN-----ESSGLII--VGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
T L+ +++ +R SG I+ VGPEG +TE+E + +AG V LG LR ET
Sbjct: 165 TKLIMSINRARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFDAGFQTVTLGKRILRTET 224
Query: 271 ATIALLATL 279
+A LA +
Sbjct: 225 VALAALAAM 233
>gi|341615763|ref|ZP_08702632.1| 16S ribosomal RNA methyltransferase RsmE [Citromicrobium sp.
JLT1363]
Length = 251
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 104/232 (44%), Gaps = 19/232 (8%)
Query: 45 PRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PR F S+G ++G+ ++ KV+R+S D V L + G + ++D+ +D
Sbjct: 13 PRLFLDDELSEGRTFALDGNRAHYLGKVMRVSEGDIVILCDDITGEWAARVGQVDKRRVD 72
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
V E L+ P+ +++ LK R D ++EK TELG ++ P++T R +
Sbjct: 73 VTVAERLR---PREEVPDLWLCPALLKKDRFDLVLEKATELGVSAIHPVVTR-----RCV 124
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
D L+ + +A L + L P+++D LL + F A E
Sbjct: 125 ADK--LNPERARTIVTEAAEQCARTALPK--LADPVRLDALLATWPPDRALFFADEEGGS 180
Query: 220 LVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVE-AGATAVGLGPHRLRVET 270
+ ++ + I+ GPEG F + E +KI A + LGP LR ET
Sbjct: 181 AAASQFAAHGGPAA-ILTGPEGGFDDAERDKIRALPQAVPITLGPRILRGET 231
>gi|365869645|ref|ZP_09409192.1| hypothetical protein MMAS_15940 [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|421048508|ref|ZP_15511504.1| ribosomal RNA small subunit methyltransferase E [Mycobacterium
massiliense CCUG 48898 = JCM 15300]
gi|363999102|gb|EHM20308.1| hypothetical protein MMAS_15940 [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|392242673|gb|EIV68160.1| ribosomal RNA small subunit methyltransferase E [Mycobacterium
massiliense CCUG 48898]
Length = 258
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 104/238 (43%), Gaps = 23/238 (9%)
Query: 44 IPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL--DVV 101
+ R S G V ++GDE H +VLR+ + V + +G G + +G + +DRTGL DV
Sbjct: 9 VSRVPSAGEQVLLDGDEGHHAARVLRMRVGEPVMVCDGAGEVGDGVVASVDRTGLAIDVT 68
Query: 102 ALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTP-----LLTELHLQS 156
+ V P+ T V A K R++ V+ E GA V P ++
Sbjct: 69 GRWSVAAVDPKVT---VVQAL--PKSDRSELAVDLAVEAGADEVIPWQAQRCVSRWDAHK 123
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMV----LNPPMKIDGLLPLVSQSKLAFV 212
+ G + + + A+V LH L DG + LV L
Sbjct: 124 AEKGRRRWEAVAQAASRQSRRAYVPSVPELHSTAQLAELVGARAADGAVVLV----LHES 179
Query: 213 AIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
A + L LSS+ SS ++IVGPEG ++E+ + +AGA V LGP LR +
Sbjct: 180 AESGLGALAARLSSA---SSVVLIVGPEGGVADEELRILADAGAAPVRLGPTVLRTSS 234
>gi|16127645|ref|NP_422209.1| hypothetical protein CC_3415 [Caulobacter crescentus CB15]
gi|221236464|ref|YP_002518901.1| 16S ribosomal RNA methyltransferase RsmE [Caulobacter crescentus
NA1000]
gi|13425129|gb|AAK25377.1| conserved hypothetical protein [Caulobacter crescentus CB15]
gi|220965637|gb|ACL96993.1| surface protein [Caulobacter crescentus NA1000]
Length = 238
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 110/245 (44%), Gaps = 35/245 (14%)
Query: 44 IPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGG-----LIE----GCIQRID 94
+P S G V D+ ++T V+RLS + LFNG+ G L+E GC+ + +
Sbjct: 6 VPNDLSAGAGVVPTVDQSRYLTSVMRLSVGAELLLFNGRDGEWRATLVEATKRGCLLKAE 65
Query: 95 RTGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHL 154
+ DL L++ +K GR + +VEK ELGA+ V L +
Sbjct: 66 EQTRPMTLGPDLDLIV------------AMVKRGRVETIVEKAAELGARRV-----RLTI 108
Query: 155 QSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS-KLAFVA 213
R D F+ +A G RL + P K+D +L + +L F
Sbjct: 109 TRRTNVD--FVKLGRLDAIAMEAAEQTG--RLDVPEVADPEKLDKILDAWDPARRLVFCD 164
Query: 214 I-AEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVE-AGATAVGLGPHRLRVETA 271
+A P++ ALS + ++ I++GPEG F +E ++ A T V LGP LR +TA
Sbjct: 165 EGGDARPMIEALSGTTGPAA--ILIGPEGGFAPEERERLRGLAFVTPVSLGPRILRADTA 222
Query: 272 TIALL 276
I+ +
Sbjct: 223 AISAM 227
>gi|359454409|ref|ZP_09243693.1| 16S rRNA (uracil1498-N3)-methyltransferase [Pseudoalteromonas sp.
BSi20495]
gi|358048580|dbj|GAA79942.1| 16S rRNA (uracil1498-N3)-methyltransferase [Pseudoalteromonas sp.
BSi20495]
Length = 244
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 114/248 (45%), Gaps = 23/248 (9%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+P + + I V ++ D H+ +VLR+ + V +FNG+GG I + + +
Sbjct: 3 VPHIYQKSNIILNTPVSLDEDAAGHVGRVLRMKVGENVSIFNGEGGEYLSEIIEVTKKTV 62
Query: 99 DVVALE----DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHL 154
V+ E D++ L H V +G + D+ ++K ELG +TP+ ++
Sbjct: 63 VVMPYEFNAHDVESPLKIHLGQCVS------RGDKMDFTIQKSVELGITEITPIFSQ-RC 115
Query: 155 QSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS-KLAFVA 213
+ +GD + + IA +A G+ ++NPP+ + L + + KL
Sbjct: 116 GVKLMGDR-LEKKHQQWQKIAIAAAEQSGRNFIP-IINPPIDLKQWLAQQTNAIKLTLHP 173
Query: 214 IAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
AE + + ++ ++ L VGPEG FT+ E+ + + LGP LR ETA +
Sbjct: 174 RAEHS--IKTITVPKDGVRFL--VGPEGGFTDDEMALTKQLEFVDIRLGPRVLRTETAAL 229
Query: 274 ALLATLML 281
+L+ L L
Sbjct: 230 TVLSALQL 237
>gi|384213262|ref|YP_005602345.1| 16S ribosomal RNA methyltransferase RsmE [Brucella melitensis
M5-90]
gi|384410364|ref|YP_005598984.1| 16S ribosomal RNA methyltransferase RsmE [Brucella melitensis M28]
gi|326410911|gb|ADZ67975.1| 16S ribosomal RNA methyltransferase RsmE [Brucella melitensis M28]
gi|326554202|gb|ADZ88841.1| 16S ribosomal RNA methyltransferase RsmE [Brucella melitensis
M5-90]
Length = 285
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 95/208 (45%), Gaps = 16/208 (7%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++T VLR+ D V +FNG+ G + +Q R L LE L+ PQ + F
Sbjct: 68 YLTHVLRMKEGDEVLVFNGRDGEWKASLQPEGRKRL---LLEPLEQTRPQPKPSELIYCF 124
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
LK GR D++V+K E+GA + P++T+ H Q+ ++G + A V
Sbjct: 125 APLKQGRLDYMVQKAVEMGAGVLQPVITQ-HTQALRLGTERIRANAIE---AAEQCGVLS 180
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQS-KLAFVAIA-EATPLVTALSSSRNESSGLIIVGPE 240
E ++ D L S +L F E+ ++ L+ SGL+I GPE
Sbjct: 181 LPDCREA-----LRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLEPGPSGLLI-GPE 234
Query: 241 GDFTEKEVNKIVEAG-ATAVGLGPHRLR 267
G F+E+E + TA+ LGP LR
Sbjct: 235 GGFSEEERQLLHRLPFVTAIPLGPRILR 262
>gi|421895564|ref|ZP_16325964.1| conserved hypothetical protein [Ralstonia solanacearum MolK2]
gi|206586729|emb|CAQ17314.1| conserved hypothetical protein [Ralstonia solanacearum MolK2]
Length = 249
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 107/253 (42%), Gaps = 28/253 (11%)
Query: 43 GIPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTG 97
G+PRF+ + V + H+ VLRL+ D V+LF+G G R
Sbjct: 2 GLPRFYIDSPLAPHTTVTLPESVARHI-HVLRLAVGDDVQLFDGSGLEF--------RAR 52
Query: 98 LDVVALEDLKLVLPQHTQWNVFAAF------GTLKGGRADWLVEKCTELGAQSVTPLLTE 151
LD + D L TQ + A + G G + DWL+EK ELG ++ PL TE
Sbjct: 53 LDAINRRDATASLADATQPDTEARYVITLAQGIAGGDKMDWLIEKAVELGVHAIAPLQTE 112
Query: 152 LHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAF 211
+ R G+ + + + G R+ ++P + L S A
Sbjct: 113 RGV-VRLSGERAAKRVQHWQALVQAACEQCGRARVP--AVSPVTTLRDWLTAAKASGRAR 169
Query: 212 VAI----AEATPLVTALSSSRNESSGL-IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRL 266
V + +++ A S R +S+G+ +++GPEG + E + AG + LG L
Sbjct: 170 VMLSPRGSQSLTQWAAQSRERIDSTGIELLIGPEGGLSPDEESLAEAAGYLPLTLGRRIL 229
Query: 267 RVETATIALLATL 279
R E+A + ++ L
Sbjct: 230 RTESAALVAVSAL 242
>gi|385265542|ref|ZP_10043629.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus sp. 5B6]
gi|385150038|gb|EIF13975.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus sp. 5B6]
Length = 256
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 100/242 (41%), Gaps = 33/242 (13%)
Query: 55 RVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHT 114
++ G++ H+ V+R+S DR+ + K G C+ L V+ + + + + T
Sbjct: 20 QITGEDVHHIANVMRMSAGDRI-ICCSKDGHEALCL-------LKEVSKDHISCSIAEWT 71
Query: 115 QWN------VFAAFGTLKGGRADWLVEKCTELGAQSVTPL-----------LTELHLQSR 157
N + A G KG + +W+++K TELGA P + R
Sbjct: 72 GENRELPLKIRIASGLPKGDKLEWIIQKGTELGASMFIPFQGARSVVKLDDKKAKKKRER 131
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA 217
+ Y I V+ ++L E+ N +D + +S E
Sbjct: 132 WAKIAKEAAEQSYRNEIPEVKTVHTFRQLLELAEN----VDKCVVAYEESSKQ----GET 183
Query: 218 TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
L S SS LI+ GPEG TE EV+++ E GA GLGP LR ETA + L+
Sbjct: 184 GAFAAELKSLPQGSSLLIVFGPEGGLTESEVHQLSEKGAVLCGLGPRILRTETAPLYALS 243
Query: 278 TL 279
+
Sbjct: 244 AV 245
>gi|59802454|ref|YP_209166.1| 16S ribosomal RNA methyltransferase RsmE [Neisseria gonorrhoeae FA
1090]
gi|268596016|ref|ZP_06130183.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268685742|ref|ZP_06152604.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|293397817|ref|ZP_06642023.1| ribosomal RNA small subunit methyltransferase E [Neisseria
gonorrhoeae F62]
gi|59719349|gb|AAW90754.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
gi|268549804|gb|EEZ44823.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268626026|gb|EEZ58426.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|291611763|gb|EFF40832.1| ribosomal RNA small subunit methyltransferase E [Neisseria
gonorrhoeae F62]
Length = 241
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 114/249 (45%), Gaps = 29/249 (11%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRF+ S G V + + H+ VLR+ N+ + LF+GKG + +++
Sbjct: 1 MPRFYLPENLSVGQTVDLPDNIVRHL-NVLRVRPNENITLFDGKGKAHTARLTVLEKHRA 59
Query: 99 DVVAL-EDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
+ L ED + N+ G R D+ ++K ELG ++ P+++E + R
Sbjct: 60 EAEILHED---TTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCI-VR 115
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA 217
G+ + + ++ G + PP +LP++ + +E
Sbjct: 116 LDGERAAKRLARWQEIVISACEQSGRNTV------PP-----VLPIIGYREALDKMPSEN 164
Query: 218 TPLVTALSSS------RNESSGLI-IVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
T L+ +++ + R+ S ++ +VGPEG +TE+E + EAG AV LG LR ET
Sbjct: 165 TKLIMSINRACKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGFQAVTLGKRILRTET 224
Query: 271 ATIALLATL 279
A +A +A +
Sbjct: 225 APLAAIAAM 233
>gi|357031037|ref|ZP_09092981.1| 16S ribosomal RNA methyltransferase RsmE [Gluconobacter morbifer
G707]
gi|356415731|gb|EHH69374.1| 16S ribosomal RNA methyltransferase RsmE [Gluconobacter morbifer
G707]
Length = 247
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 94/240 (39%), Gaps = 32/240 (13%)
Query: 48 FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQ--RIDRTGLDVVALED 105
F+ G + + + ++ VLR D V +FN + G GC+Q R DR + + E
Sbjct: 26 FAAGLEIPLPPGQAHYLGNVLRQRVGDAVRVFNARDGEWSGCLQTLRKDRGSIRLYVQER 85
Query: 106 LKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFL 165
P V F LK + L+ TELG P++TE R
Sbjct: 86 -----PARPTEGVELLFAPLKRDATELLIRMGTELGVTRFIPVVTERTNTHR-------- 132
Query: 166 SCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALS 225
N F+ + +RL + P L PL K + PL AL
Sbjct: 133 -LNPQRLFLIATEAAEQCERLDVPSIAP------LEPL----KAVLAEWPDGKPLFAALE 181
Query: 226 SSRNESSGLI-----IVGPEGDFTEKEVNKIVEAGAT-AVGLGPHRLRVETATIALLATL 279
E G + ++GPEG FTE EV + A A+GLGP LR ETA A L L
Sbjct: 182 RRPGEEDGSVRAAALLIGPEGGFTEAEVALLQRTPAVHALGLGPLILRAETAVCAGLVRL 241
>gi|239627767|ref|ZP_04670798.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239517913|gb|EEQ57779.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 249
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 107/243 (44%), Gaps = 24/243 (9%)
Query: 51 GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD--VVALEDLKL 108
G +R+ G + HM LR+ + V + +G G + +D ++ +V+++
Sbjct: 13 GDCIRITGPDVNHMKNALRMKPGEEVLISDGTGTDYRCALSSLDSDCVEARIVSVDRDGR 72
Query: 109 VLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFL 165
LP ++ G K + + +++K ELGA + P+ T+ + L ++K
Sbjct: 73 ELPSR----IWLFQGLPKSDKMELIIQKAVELGAACIVPVSTKNAVVKLDAKK-----EE 123
Query: 166 SCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALS 225
+ + IA SA G+ L V+ M + + + + A I +
Sbjct: 124 AKRKRWQAIAESAAKQSGRSLMPEVMGL-MTLGQAFDYIEKEQFALRLIPYEHE--AGME 180
Query: 226 SSRNESSGL-------IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLAT 278
SR E S + + +GPEG F E E+N ++ G V LG LR ETA +A+L+
Sbjct: 181 GSRQELSRVGPGQDIAVFIGPEGGFDEAEINLALKKGVRPVSLGKRILRTETAGLAMLSV 240
Query: 279 LML 281
LM+
Sbjct: 241 LMM 243
>gi|334315238|ref|YP_004547857.1| Ribosomal RNA small subunit methyltransferase E [Sinorhizobium
meliloti AK83]
gi|384528483|ref|YP_005712571.1| Ribosomal RNA small subunit methyltransferase E [Sinorhizobium
meliloti BL225C]
gi|384534882|ref|YP_005718967.1| hypothetical protein SM11_chr0425 [Sinorhizobium meliloti SM11]
gi|433612536|ref|YP_007189334.1| RNA methyltransferase, RsmE family [Sinorhizobium meliloti GR4]
gi|333810659|gb|AEG03328.1| Ribosomal RNA small subunit methyltransferase E [Sinorhizobium
meliloti BL225C]
gi|334094232|gb|AEG52243.1| Ribosomal RNA small subunit methyltransferase E [Sinorhizobium
meliloti AK83]
gi|336031774|gb|AEH77706.1| hypothetical protein SM11_chr0425 [Sinorhizobium meliloti SM11]
gi|429550726|gb|AGA05735.1| RNA methyltransferase, RsmE family [Sinorhizobium meliloti GR4]
Length = 245
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 95/211 (45%), Gaps = 14/211 (6%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
++F ++ VLRL + +FNG+ G I R +VA+E + PQ ++
Sbjct: 27 EQFNYLINVLRLGEGSSLLVFNGRDGEWRAEIAMPSRKQAVLVAVEQTR---PQPAPCDL 83
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSA 178
F LK GR D+LV+K E+GA + P++T+ H+Q KIG + N A
Sbjct: 84 VYLFAPLKVGRLDYLVQKAVEMGAGVLQPVMTQ-HVQG-KIGSLERVRANVIEA--AEQC 139
Query: 179 FVYGGQRLHEMVLNPPMKIDGLL-PLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIV 237
V G + E P K++ LL ++ F + + E +++
Sbjct: 140 GVLGIPAVEE-----PRKLEDLLIDWPRDRRIVFCDEGNDSQNPLPILEGIAERRLALLI 194
Query: 238 GPEGDFTEKEVNKIVEAG-ATAVGLGPHRLR 267
GPEG F+E E + + TA+ LGP LR
Sbjct: 195 GPEGGFSEAERDLLRSRDFVTAIPLGPRILR 225
>gi|299769311|ref|YP_003731337.1| ribosomal RNA small subunit methyltransferase E [Acinetobacter
oleivorans DR1]
gi|298699399|gb|ADI89964.1| ribosomal RNA small subunit methyltransferase E [Acinetobacter
oleivorans DR1]
Length = 240
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 106/243 (43%), Gaps = 21/243 (8%)
Query: 46 RFFSQ-----GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV 100
RFF + G +++ F H +VLR ++ LFNG+GG + I++
Sbjct: 3 RFFIETELTVGSTIQLTESVFHHWVRVLRAQLQEQATLFNGQGGEYLATLSEINKKNA-F 61
Query: 101 VALEDLKLVLPQHTQWNVFAAFGTL--KGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
V LE+ P + A G + KG R D+ ++K TELG + LLT + R
Sbjct: 62 VTLENFN---PNNRNAPFKAVLGQVMSKGDRMDYAIQKATELGVSKIQ-LLTSDRCEMRL 117
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPL--VSQSKLAFVAIAE 216
D + ++ +A +A G L VL P+ ++ L + QSK E
Sbjct: 118 KYDRDQKKLD-HWQAVAIAACEQCGLNLVPEVL-APISLNEWLSSSELPQSKFVLAPEKE 175
Query: 217 ATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALL 276
++ + + +++GPEG +E E+ + +AG +G LR ETA + L
Sbjct: 176 QKDVLAGI-----QPELALLIGPEGGLSENEITQANQAGFMNWCIGDRVLRTETAPVVAL 230
Query: 277 ATL 279
+ L
Sbjct: 231 SIL 233
>gi|359399475|ref|ZP_09192478.1| 16S ribosomal RNA methyltransferase RsmE [Novosphingobium
pentaromativorans US6-1]
gi|357599289|gb|EHJ61004.1| 16S ribosomal RNA methyltransferase RsmE [Novosphingobium
pentaromativorans US6-1]
Length = 252
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 109/244 (44%), Gaps = 23/244 (9%)
Query: 45 PRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PR F G I V +EG + +++KV+R+S D V L + + G E + D
Sbjct: 13 PRLFVPGPIALAAHVAIEGAQAHYLSKVMRVSAGDAVILCDDETG--EWACAVVSAGKRD 70
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
VV LE + + P+ + LK D ++EK TELG + + P++T R +
Sbjct: 71 VV-LEARERLRPREQVPDFTLCAALLKKPNFDLVLEKATELGVRRIQPVVTR-----RCV 124
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIA-EAT 218
D L+ + +A L E L P+K++ LL + + F A
Sbjct: 125 ADK--LNPERARTMVTEAAEQCARTALPE--LAEPLKLEALLRDWPEDRALFFADELGGE 180
Query: 219 PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEA--GATAVGLGPHRLRVETATIALL 276
P + R ++ ++VGPEG F E E ++ A A + LGP LR ETA+IA
Sbjct: 181 PAAAQFDAYRGPAA--LLVGPEGGFDEGE-RALIRALPQARPITLGPRILRGETASIAAT 237
Query: 277 ATLM 280
A M
Sbjct: 238 ALWM 241
>gi|365135526|ref|ZP_09343876.1| RsmE family RNA methyltransferase [Subdoligranulum sp. 4_3_54A2FAA]
gi|363612349|gb|EHL63892.1| RsmE family RNA methyltransferase [Subdoligranulum sp. 4_3_54A2FAA]
Length = 239
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 111/251 (44%), Gaps = 24/251 (9%)
Query: 46 RFFS---QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVA 102
R+F+ GG + G + H+ V+R + V L +GKG ++ G D V
Sbjct: 4 RYFTTDISGGTAVLSGADAHHLAHVMRARPGETVTLCDGKGTDYACAVRGF---GPDTVE 60
Query: 103 LEDLKLVLPQHTQWN-----VFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
LE +L T + V G K + + +V+K ELGA V P + + +
Sbjct: 61 LE----ILSSSTSVSEPGVRVTLYVGYPKQDKLETIVQKAVELGAVRVVPFFSRYCVAAP 116
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI-AE 216
K + N Y IA A G+ + V P+ +L +++ AF A
Sbjct: 117 KKEEQK----NLRYNRIAFEAAKQSGRGVVPQV-ELPVTYKQMLADAARNDAAFFCYEAG 171
Query: 217 ATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALL 276
PL++ L + E+ GLI G EG F+ +E EAG +GLGP LR ETA +A L
Sbjct: 172 GEPLLSRLGGA--ETIGLI-TGSEGGFSPEEAAAAREAGCVQIGLGPRILRCETAPLAAL 228
Query: 277 ATLMLCSDSQQ 287
A +M + + Q
Sbjct: 229 AAVMTLTGNLQ 239
>gi|407719637|ref|YP_006839299.1| 16S ribosomal RNA methyltransferase RsmE [Sinorhizobium meliloti
Rm41]
gi|418400003|ref|ZP_12973548.1| 16S ribosomal RNA methyltransferase RsmE [Sinorhizobium meliloti
CCNWSX0020]
gi|359506120|gb|EHK78637.1| 16S ribosomal RNA methyltransferase RsmE [Sinorhizobium meliloti
CCNWSX0020]
gi|407317869|emb|CCM66473.1| 16S ribosomal RNA methyltransferase RsmE [Sinorhizobium meliloti
Rm41]
Length = 245
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 95/211 (45%), Gaps = 14/211 (6%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
++F ++ VLRL + +FNG+ G I R +VA+E + PQ ++
Sbjct: 27 EQFNYLINVLRLGEGSSLLVFNGRDGEWRAEIAMPSRKQAVLVAVEQTR---PQPAPCDL 83
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSA 178
F LK GR D+LV+K E+GA + P++T+ H+Q KIG + N A
Sbjct: 84 VYLFAPLKVGRLDYLVQKAVEMGAGVLQPVMTQ-HVQG-KIGSLERVRANVIEA--AEQC 139
Query: 179 FVYGGQRLHEMVLNPPMKIDGLL-PLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIV 237
V G + E P K++ LL ++ F + + E +++
Sbjct: 140 GVLGIPAVEE-----PRKLEDLLMDWPRDRRIVFCDEGNDSQNPLPILEGIAERRLALLI 194
Query: 238 GPEGDFTEKEVNKIVEAG-ATAVGLGPHRLR 267
GPEG F+E E + + TA+ LGP LR
Sbjct: 195 GPEGGFSEAERDLLRSRDFVTAIPLGPRILR 225
>gi|264680843|ref|YP_003280753.1| hypothetical protein CtCNB1_4711 [Comamonas testosteroni CNB-2]
gi|262211359|gb|ACY35457.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
Length = 246
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 95/227 (41%), Gaps = 19/227 (8%)
Query: 66 KVLRLSTNDRVELFNGK------GGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVF 119
+VLR D + LF G+ GG + I + R+ DV D + V
Sbjct: 27 QVLRHQPGDVITLFEGQTGNGFTGGEFQATITHMGRS--DVGVRVDSHSPAEREAARAVH 84
Query: 120 AAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAF 179
G R DWLVEK TELG S+ P++ + K GD + IA SA
Sbjct: 85 LVVGMPANERMDWLVEKATELGVASIQPVMAARSVLKLK-GDRADKKIERWQS-IAVSAC 142
Query: 180 VYGGQRLHEMVLNPPMKIDGLL-----PLVSQSKLAFVAIAEATPLVTALSSSRNESSGL 234
G R V++ P+ + L P ++L PL TA ++ +
Sbjct: 143 EQCG-RNQVPVIHAPLPLADWLRSKDAPATDATRLVLSLREGNQPLRTAAGDAQ---AVW 198
Query: 235 IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
++ GPEG T +E + +E G LG LR ETA++A L+ L L
Sbjct: 199 VLHGPEGGLTAQEEDLALEQGWKPASLGSRVLRAETASVAALSLLAL 245
>gi|384565354|ref|ZP_10012458.1| RNA methyltransferase, RsmE family [Saccharomonospora glauca K62]
gi|384521208|gb|EIE98403.1| RNA methyltransferase, RsmE family [Saccharomonospora glauca K62]
Length = 253
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 95/217 (43%), Gaps = 7/217 (3%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE--DLKLVLPQH 113
++G+E H V RL +R+ L +G+GG+ + + + V L D++ V
Sbjct: 25 LDGEEAHHAVTVRRLRKGERLTLSDGRGGMADCVAEAVHPGRRPTVELRVRDIRSVAAPA 84
Query: 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGF 173
+ V A KG R + VE TE G ++ P + G G + +
Sbjct: 85 LRVTVAQALA--KGDRGELAVELATEAGVDAIVPWRAARSVARWDDGPRGAKALGKWRAT 142
Query: 174 IANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSG 233
+A + E+ + PM L +V+++ LA V A +T L+ +
Sbjct: 143 ARAAAKQARRAWVPEV--SEPMTTRELATVVAEADLALVLDGAAPEALTDLALP-EKGEL 199
Query: 234 LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
L++VGPEG +E+ VEAGA +V LGP LR T
Sbjct: 200 LLVVGPEGGVAPEELAAFVEAGARSVRLGPTVLRTST 236
>gi|386332416|ref|YP_006028585.1| hypothetical protein RSPO_c00747 [Ralstonia solanacearum Po82]
gi|334194864|gb|AEG68049.1| conserved hypothetical protein [Ralstonia solanacearum Po82]
Length = 249
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 107/253 (42%), Gaps = 28/253 (11%)
Query: 43 GIPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTG 97
G+PRF+ + V + H+ VLRL+ D V+LF+G G R
Sbjct: 2 GLPRFYIDSPLAPHTTVTLPESVARHI-HVLRLAVGDDVQLFDGSGLEF--------RAR 52
Query: 98 LDVVALEDLKLVLPQHTQWNVFAAF------GTLKGGRADWLVEKCTELGAQSVTPLLTE 151
LD + D L TQ + A + G G + DWL+EK ELG ++ PL TE
Sbjct: 53 LDAINRRDATASLADATQPDTEARYAITLAQGIAGGDKMDWLIEKAVELGVHAIAPLQTE 112
Query: 152 LHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAF 211
+ R G+ + + + G R+ ++P + L S A
Sbjct: 113 RGV-VRLSGERAAKRVQHWQALVQAACEQCGRARVP--AVSPVTTLRDWLTAAKASGRAR 169
Query: 212 VAI----AEATPLVTALSSSRNESSGL-IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRL 266
+ + +++ A S R +S+G+ +++GPEG + E + AG + LG L
Sbjct: 170 IMLSPRGSQSLTQWAAQSRERIDSTGIELLIGPEGGLSPDEESLAEAAGYLPLTLGRRIL 229
Query: 267 RVETATIALLATL 279
R E+A + ++ L
Sbjct: 230 RTESAALVAVSAL 242
>gi|260431629|ref|ZP_05785600.1| surface protein [Silicibacter lacuscaerulensis ITI-1157]
gi|260415457|gb|EEX08716.1| surface protein [Silicibacter lacuscaerulensis ITI-1157]
Length = 241
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 100/219 (45%), Gaps = 21/219 (9%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLK-LVLPQHTQWNVFAA 121
++ V+RL+ +V LFNG+ G + + G + LE + L LP +++
Sbjct: 28 YLFGVMRLAVGGQVALFNGRDGEWLAEVAEAGKRGGVLSCLEQTRPLQLPP----DLWLL 83
Query: 122 FGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAF-- 179
F +K R D++VEK E+GA + P+ T S +I + + F
Sbjct: 84 FAPIKKARTDFIVEKAAEMGAAKIMPVQTAF-TNSERIRQDRLQAHAVEAAEQCGGTFVP 142
Query: 180 -VYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVG 238
V QRL +++ N P DG +L F AEA + L++ I++G
Sbjct: 143 EVCDLQRLDKLLDNWP---DG-------RQLMFCDEAEAGSALR-LAAQDKGRPWAILIG 191
Query: 239 PEGDFTEKEVNKIVEAGAT-AVGLGPHRLRVETATIALL 276
PEG F++ E ++ + T V LGP LR +TA +A +
Sbjct: 192 PEGGFSDAERQRLKDLPFTHVVSLGPRILRADTAAVAAM 230
>gi|389703272|ref|ZP_10185507.1| hypothetical protein HADU_00644 [Acinetobacter sp. HA]
gi|388611487|gb|EIM40588.1| hypothetical protein HADU_00644 [Acinetobacter sp. HA]
Length = 236
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 105/244 (43%), Gaps = 20/244 (8%)
Query: 44 IPRFFSQGGI-----VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRFF + + V + F H KVLR ++ LFNG+GG E + + +
Sbjct: 1 MPRFFIEADLNVDSTVELTETVFHHWVKVLRAQVGEKATLFNGQGGEYEVELVEVAKKSA 60
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTL--KGGRADWLVEKCTELGAQSVTPLLTELHLQS 156
V + P + A G + KG R D+ ++K ELG + LLT +
Sbjct: 61 TV----QVNSFNPSNRMPKFTALLGQVMSKGDRMDYAIQKAVELGVSEIQ-LLTSERCEM 115
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAE 216
R D + ++ IA +A G + +L PPM ++ L QS+L +
Sbjct: 116 RLKYDRDQKKLD-HWQAIATAACEQCGLNIVPKIL-PPMSLENWL----QSELPQTKLVL 169
Query: 217 ATPLVTALSSSRNESSGL-IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIAL 275
A P + N + L +++GPEG +E E++ G +G LR ETA +
Sbjct: 170 A-PNKDEVDVLYNATPDLALLIGPEGGLSEAEISAANTHGFVNWCIGERVLRTETAPVVA 228
Query: 276 LATL 279
L+ L
Sbjct: 229 LSIL 232
>gi|386714867|ref|YP_006181190.1| hypothetical protein HBHAL_3570 [Halobacillus halophilus DSM 2266]
gi|384074423|emb|CCG45916.1| conserved hypothetical protein [Halobacillus halophilus DSM 2266]
Length = 253
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 111/247 (44%), Gaps = 16/247 (6%)
Query: 44 IPRFFSQGGIVRVE-----GDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+ R+F +G E G++ H+++V+R+ D++ + + G I + +
Sbjct: 1 MQRYFVKGSSWENERLWITGEDVHHISRVMRMDKGDKLIGIHPELGPAICEISEVTSNHV 60
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
+ E L+ Q ++ + G KG + + +V+K TELGA + P E + K
Sbjct: 61 ECWVEEWLEENRELPVQVSIVQSLG--KGDKLEQVVQKGTELGAFTFIPYQAERSVA--K 116
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT 218
+ IA A +R+ ++ + L+ L + +A A+
Sbjct: 117 WDEKKAEKKIQRLQKIAKEA-SEQSERIRIPEIHSLLSFQELIHLTKEYDWCILAHADEA 175
Query: 219 ------PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
PL + L + + L++ GPEG F+EKEV+ +V AG V LGP LR+ETA
Sbjct: 176 RRKSYRPLASILEMIKPDDRVLVVFGPEGGFSEKEVSDLVSAGFLTVRLGPRILRMETAP 235
Query: 273 IALLATL 279
+ L+TL
Sbjct: 236 LYFLSTL 242
>gi|299535791|ref|ZP_07049112.1| hypothetical protein BFZC1_07198 [Lysinibacillus fusiformis ZC1]
gi|298728991|gb|EFI69545.1| hypothetical protein BFZC1_07198 [Lysinibacillus fusiformis ZC1]
Length = 264
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 101/248 (40%), Gaps = 18/248 (7%)
Query: 43 GIPRFFSQGGI--VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV 100
G+ R+F + I R+ G++ H+ +V+R+ D + + I C I+ D
Sbjct: 19 GMQRYFIETAIENARISGEDARHIERVMRMKQGDNIVVVAQNTAYI--CT--IEGFEGDE 74
Query: 101 VALEDLKLVLPQ-HTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
V +E +P V A G KG + + + +K TELG ++ P E +
Sbjct: 75 VVIEATGQTIPSPELPIQVTVACGLPKGDKLELITQKATELGMFALLPFEAERSIVKWDK 134
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAE--- 216
IA A R H + P+ L+ + Q F+A E
Sbjct: 135 KKGAKKQERLQK--IAKEA-AEQAHRTHIPTVFEPISFKQLVQQIDQFDAVFIADEEDAK 191
Query: 217 ---ATPLVTALSS--SRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA 271
T L + + S LII GPEG + +E +++AGA + LGP LR ETA
Sbjct: 192 AEKRTRFAEKLKNVYDKKSKSMLIIFGPEGGISRQESEALLQAGAQTMSLGPRILRAETA 251
Query: 272 TIALLATL 279
+ L+ +
Sbjct: 252 PLYALSAI 259
>gi|260221803|emb|CBA30730.1| Ribosomal RNA small subunit methyltransferase E [Curvibacter
putative symbiont of Hydra magnipapillata]
Length = 241
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 98/246 (39%), Gaps = 38/246 (15%)
Query: 44 IPRFFSQGGIVRVEGDEF----WHMTKVLRLSTNDRVELFNGKGG-LIEGCIQRIDRTGL 98
+PRFF +V E +VLRL D + LF+G+ + + R+ R+
Sbjct: 1 MPRFFCAAALVSDTALELPAGAARHVQVLRLQPGDSITLFDGQSADEFDATVTRMGRS-- 58
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE------- 151
DV + + + + A G R DWLVEK TELG S+ PL+TE
Sbjct: 59 DVAVQVGQRRTVAREPARQIHLAVGMPANDRMDWLVEKATELGVASIQPLMTERSVLKLS 118
Query: 152 --------LHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPL 203
H QS + +C G + V+ Q L + + +P + D +P
Sbjct: 119 GERAEKKVAHWQSVAVA-----ACEQCGGNMVP--VVHPMQTLAQWLKSPSAQSD--IP- 168
Query: 204 VSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGP 263
+L A +TP+ + S + + GPEG + E + A + LGP
Sbjct: 169 ---QRLLLSLRAGSTPVASLPS---GPAPVWFLSGPEGGLSSHEEEAAIAARFSPASLGP 222
Query: 264 HRLRVE 269
LR E
Sbjct: 223 RVLRAE 228
>gi|428280034|ref|YP_005561769.1| hypothetical protein BSNT_03788 [Bacillus subtilis subsp. natto
BEST195]
gi|291484991|dbj|BAI86066.1| hypothetical protein BSNT_03788 [Bacillus subtilis subsp. natto
BEST195]
Length = 256
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 101/238 (42%), Gaps = 27/238 (11%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE--DLKLVLPQH 113
+ G++ H+ V+R++ D++ + G + +Q + + + + +E + LP
Sbjct: 21 ITGEDVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSKDKVSCLVIEWTNKNRELP-- 78
Query: 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHL-----------QSRKIGDN 162
V+ A G KG + +W+++K TELGA + P + + R
Sbjct: 79 --IKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIA 136
Query: 163 GFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKL-AFVAIAEATPLV 221
+ Y + V+ Q+L + + + + Q ++ AF AI + P
Sbjct: 137 KEAAEQSYRNEVPRVMDVHSFQQLLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLP-- 194
Query: 222 TALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
SS LI+ GPEG TE EV ++ E GLGP LR ETA + L+ +
Sbjct: 195 -------KGSSLLIVFGPEGGLTEAEVERLTEQDGVTCGLGPRILRTETAPLYALSAI 245
>gi|359394523|ref|ZP_09187576.1| Ribosomal RNA small subunit methyltransferase E [Halomonas
boliviensis LC1]
gi|357971770|gb|EHJ94215.1| Ribosomal RNA small subunit methyltransferase E [Halomonas
boliviensis LC1]
Length = 258
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 112/255 (43%), Gaps = 15/255 (5%)
Query: 30 SSSSSDYANQSRGGIPRF-----FSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGG 84
+S ++D+ Q +G +PR F G +V + H+T+VLR+ + LF+G+G
Sbjct: 7 ASPAADWYAQ-QGKMPRLYVPAAFVAGSVVALPDGAARHITRVLRMGKGAPLVLFDGQG- 64
Query: 85 LIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQS 144
+E ++ + + +A + + +V KG R D+ ++K ELG +
Sbjct: 65 -LEAGVRLAEVSRKQTLARVEAVWSGSGESPLSVHLGQAISKGDRMDYAIQKAVELGVAA 123
Query: 145 VTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLV 204
+TPL TE R GD ++ +A SA G+ + V + PM + L
Sbjct: 124 ITPLYTE-RGDVRLKGDREEKKLA-HWQAVAASACEQSGRAVVPQV-HAPMPLSTWLEER 180
Query: 205 SQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPH 264
+ + +A A S +++GPEG ++ ++ A T + LGP
Sbjct: 181 QEPLRLMLHLATGN----AFDRQDRPVSVALLIGPEGGLSDSDIAAAQSADFTPLTLGPR 236
Query: 265 RLRVETATIALLATL 279
LR ETA + L+ L
Sbjct: 237 VLRTETAPVVALSLL 251
>gi|365887418|ref|ZP_09426264.1| conserved hypothetical protein [Bradyrhizobium sp. STM 3809]
gi|365336997|emb|CCD98795.1| conserved hypothetical protein [Bradyrhizobium sp. STM 3809]
Length = 250
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 106/237 (44%), Gaps = 21/237 (8%)
Query: 45 PRFFS-----QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PR + +GG V ++ ++ ++ VLRL DRV +FNG+ G + I R L
Sbjct: 9 PRLYVDAPLLEGGAVALDRNQSNYLGNVLRLGAGDRVLVFNGRDGEWQATIAGRKRADLL 68
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
V + + PQ ++ F LK R D++ +K E+GA + P++T H Q +I
Sbjct: 69 TVQ----QRLRPQDRLPDIAYVFAPLKHARLDYIAQKAVEMGAAVLQPVVTR-HTQVSRI 123
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVA--IAEA 217
NG + +A G L E+ P+ ++ L S+L A+
Sbjct: 124 --NG----ERMRANVIEAAEQCGILSLAEV--RDPVPLERFLRERQASRLLVFCDEAADV 175
Query: 218 TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIV-EAGATAVGLGPHRLRVETATI 273
V AL + + +++GPEG F +E ++ + + LGP LR +TA +
Sbjct: 176 ADPVQALRGAGAHAGIDLLIGPEGGFAAEERELLLRQPQLVRLALGPRILRADTAGV 232
>gi|300690423|ref|YP_003751418.1| ribosomal RNA small subunit methyltransferase E (rsmE) [Ralstonia
solanacearum PSI07]
gi|299077483|emb|CBJ50108.1| putative ribosomal RNA small subunit methyltransferase E (rsmE)
[Ralstonia solanacearum PSI07]
gi|344169230|emb|CCA81557.1| putative ribosomal RNA small subunit methyltransferase E (rsmE)
[blood disease bacterium R229]
Length = 249
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 95/224 (42%), Gaps = 22/224 (9%)
Query: 67 VLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF---- 122
VLRL+ D V LF+G G R R LD + D L TQ + A +
Sbjct: 30 VLRLAVGDDVCLFDGSG--------REFRARLDAINRRDATASLADATQPDTEARYAITL 81
Query: 123 --GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFV 180
G G + DWL+EK ELG ++ PL E + R G+ + + +
Sbjct: 82 AQGIAGGDKMDWLIEKAVELGVHAIAPLQAERGV-VRLSGERAVKRVQHWQALVQAACEQ 140
Query: 181 YGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAI----AEATPLVTALSSSRNESSGL-I 235
G R+ ++P + L S A V + +++ A S R +S+G+ +
Sbjct: 141 CGRARV--PAVSPVATLRDWLAAAKTSDRARVMLSPRGSQSLTQWAAQSRERIDSTGIEL 198
Query: 236 IVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
++GPEG + E + AG + LG LR E+A + ++ L
Sbjct: 199 LIGPEGGLSPDEESLAEAAGYLPLTLGRRILRTESAALVAISAL 242
>gi|71894105|ref|YP_278213.1| 16S ribosomal RNA methyltransferase RsmE [Mycoplasma synoviae 53]
gi|71850893|gb|AAZ43502.1| conserved hypothetical protein [Mycoplasma synoviae 53]
Length = 225
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 10/166 (6%)
Query: 116 WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
+ ++ A G +K R +WL+EK TELG + P ++ Q K+ + N + I
Sbjct: 67 YKIYLAIGLIKFERFEWLIEKATELGVFEIVPFYSQF-TQKHKLLNQFQNKKNRFEKIIK 125
Query: 176 NSAFVYGGQRLHEMV--LNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSG 233
+A Q ++ L P+ + LL KL I++ L + ++
Sbjct: 126 FAA----EQSFRNIIPNLKDPISFEDLLNFYVNQKLVAHEISDNQNFDLNLLT---KNDL 178
Query: 234 LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
L+ +G EG F+ E+ K EA + LG LR ETA I+L++ +
Sbjct: 179 LLTIGSEGGFSSDEIAKFKEANFKVIHLGKTILRSETAAISLISKV 224
>gi|39934226|ref|NP_946502.1| 16S ribosomal RNA methyltransferase RsmE [Rhodopseudomonas
palustris CGA009]
gi|39648074|emb|CAE26594.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
Length = 251
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 108/243 (44%), Gaps = 24/243 (9%)
Query: 45 PRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PR F + G V +E D+ ++ VLRL V FNG+ G I R
Sbjct: 9 PRLFVDAALAPGAQVPLERDQSNYLGNVLRLGAGAAVLAFNGRDGEWRATIAGRKRPE-- 66
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
ALE + PQ +V F LK R D++ +K E+GA + P+LT+ H Q +
Sbjct: 67 --ALEVAEQTRPQDRLPDVAYVFAPLKHARLDYMAQKAVEMGAGRLQPVLTQ-HTQVHR- 122
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAE--- 216
L+ + + +A G L E + P+ +D L + + V E
Sbjct: 123 -----LNTDRMRANVIEAAEQCGILSLAE--VGEPIGLDRFLAGRANGERLLVFCDEDAE 175
Query: 217 -ATPLVTALSSSRNESSGL-IIVGPEGDFTEKEVNKIVEAGAT-AVGLGPHRLRVETATI 273
A P+ ++ + G+ ++VGPEG F+ +E +++ A + LGP +R +TA +
Sbjct: 176 IADPVAALQAARDAAARGVDLLVGPEGGFSTEERALLLKQPAILRLALGPRIMRADTAAV 235
Query: 274 ALL 276
A L
Sbjct: 236 AAL 238
>gi|410618569|ref|ZP_11329510.1| 16S rRNA (uracil1498-N3)-methyltransferase [Glaciecola polaris LMG
21857]
gi|410161872|dbj|GAC33648.1| 16S rRNA (uracil1498-N3)-methyltransferase [Glaciecola polaris LMG
21857]
Length = 242
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 98/225 (43%), Gaps = 16/225 (7%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
D H+ VLR V LFNG G G + ID + V+ D KL + + +
Sbjct: 23 DACNHVANVLRAKVGQPVVLFNGDGNEYSG--EFIDVSKRKVLVQIDAKLSMNLESPLPI 80
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSA 178
G +G R D + +K ELG +TPL+TE K+ + + + + I +A
Sbjct: 81 HLGQGVSRGDRMDLVFQKSVELGVTEITPLITE--RCGVKLDEQRWQKKHAQWQKIIIAA 138
Query: 179 FVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSG----L 234
G+ + + P ++QS A T A S R+ + G
Sbjct: 139 CEQCGRNVLPTLHMPT----DFQNWINQSTQAL----RLTLHPRADKSFRHINIGNHGVR 190
Query: 235 IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
+++GPEG F+++E+ + + G V LGP LR ETA I ++ L
Sbjct: 191 LLIGPEGGFSDQELYQTEQGGYQTVQLGPRTLRTETAAITAISAL 235
>gi|169829246|ref|YP_001699404.1| hypothetical protein Bsph_3794 [Lysinibacillus sphaericus C3-41]
gi|168993734|gb|ACA41274.1| UPF0088 protein [Lysinibacillus sphaericus C3-41]
Length = 245
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 101/250 (40%), Gaps = 28/250 (11%)
Query: 46 RFFSQGGI--VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLI------EGCIQRIDRTG 97
R+F + I R+ G++ H+ +V+R+ D++ + I EG ID TG
Sbjct: 3 RYFIETAIENARISGEDARHIERVMRMKQGDQIIVVAQNIAHICKITGFEGDEVAIDATG 62
Query: 98 LDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSR 157
+ + E LP + A G KG + + + +K TELG ++ P E +
Sbjct: 63 ETIPSSE-----LP----IQITVACGLPKGDKLELITQKATELGMFALLPFEAERSIVKW 113
Query: 158 KIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA 217
IA A R H + P+ LL + Q F+A E
Sbjct: 114 DKKKGAKKQERLQK--IAKEA-AEQAHRTHIPAVYEPVTFKQLLQDIDQFDAVFIADEED 170
Query: 218 TPLVT--------ALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVE 269
L + +S LII GPEG + KE +++AGA + LGP LR E
Sbjct: 171 AKAEKRTRFADKLKLVHEKKLTSILIIFGPEGGISRKEAEALLQAGAQTMSLGPRILRAE 230
Query: 270 TATIALLATL 279
TA + L+ +
Sbjct: 231 TAPLYALSAI 240
>gi|39995554|ref|NP_951505.1| 16S ribosomal RNA methyltransferase RsmE [Geobacter sulfurreducens
PCA]
gi|409911000|ref|YP_006889465.1| 16S rRNA (3-methyl-U1498)-methyltransferase [Geobacter
sulfurreducens KN400]
gi|39982317|gb|AAR33778.1| 16S rRNA (3-methyl-U1498)-methyltransferase [Geobacter
sulfurreducens PCA]
gi|298504560|gb|ADI83283.1| 16S rRNA (3-methyl-U1498)-methyltransferase [Geobacter
sulfurreducens KN400]
Length = 260
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 93/229 (40%), Gaps = 3/229 (1%)
Query: 51 GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVL 110
G V V GD F HM + LRL + V L +GK G I + R L V E ++
Sbjct: 13 GKNVVVRGDLFRHMARSLRLKIDTEVILADGKEAECTGVITAMGRDSLTVTISERRQIRG 72
Query: 111 PQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFY 170
W G KG + + +++K TELG V P L E + +I
Sbjct: 73 DGDGLWLTLCQ-GLPKGDKMELILQKSTELGVSEVVPFLAERSVP--RISPEREQERLRR 129
Query: 171 YGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNE 230
+ +A A G V + + KL T L L++++
Sbjct: 130 WQRVAEEAARQAGCPAVPRVQLARGLTEAVRGTDHDLKLLLWEDERTTTLAGVLAAAQTP 189
Query: 231 SSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
++VGPEG FT E + EAG V LG LR ETA IAL+A L
Sbjct: 190 KRIAVVVGPEGGFTAAEAAEAREAGFVPVTLGRRILRTETAGIALVAIL 238
>gi|288802568|ref|ZP_06408007.1| RNA methyltransferase, RsmE family [Prevotella melaninogenica D18]
gi|288335096|gb|EFC73532.1| RNA methyltransferase, RsmE family [Prevotella melaninogenica D18]
Length = 244
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 102/247 (41%), Gaps = 29/247 (11%)
Query: 47 FFSQGGIVRVE--GDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE 104
F+ V E +E H +VLRL D + L +G+G + + + L
Sbjct: 7 FYVPNAAVETELPAEEAVHAIRVLRLKEGDEMFLMDGEGCFYKAEVALVSSKK----CLY 62
Query: 105 DLKLVLPQHTQW--NVFAAFGTLKG-GRADWLVEKCTELGAQSVTPLLTELHLQSRKIGD 161
+K L Q W + A K GR +W+ EK TE+G E+ K +
Sbjct: 63 TIKETLKQEPVWRGKIHLAIAPTKDMGRIEWMTEKATEVG-------FDEISFLDCKFSE 115
Query: 162 NGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVA-----IAE 216
L + + ++ V ++ + V+NP + S + F+ I+
Sbjct: 116 RKTLRADRIEKIVISA--VKQSRKGWKPVVNPMTPFRRFIENCSNNGRKFICHCYPEISR 173
Query: 217 ATPLVTALSSSRNESSG---LIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273
A TA+S SS ++VGPEGDF+ EV +E G +V LG RLR ETA
Sbjct: 174 AD-FFTAISQEEQPSSAEDITVLVGPEGDFSIDEVRFALEHGFESVILGNSRLRTETA-- 230
Query: 274 ALLATLM 280
L A +M
Sbjct: 231 GLSAVMM 237
>gi|241759555|ref|ZP_04757658.1| RNA methyltransferase, RsmE family [Neisseria flavescens SK114]
gi|241320112|gb|EER56473.1| RNA methyltransferase, RsmE family [Neisseria flavescens SK114]
Length = 241
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 106/242 (43%), Gaps = 15/242 (6%)
Query: 44 IPRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+PRF+ S +V + + H+ VLR+ + + LFNG G + +++
Sbjct: 1 MPRFYVDFALSPDSVVELPDNVVRHLN-VLRVKNTEEIVLFNGNGKAYPALPEVLEKRCA 59
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
V L + + N+ R D+ ++K ELG + P+++E R
Sbjct: 60 SVRILREE--ATDNESPLNITLVQAVSAAERMDFTLQKSVELGVAEIRPVISE-RCVVRL 116
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT 218
G+ + + SA G+ + VL L L ++ +++ A
Sbjct: 117 SGERAEKRVARWQEIVV-SACEQSGRNIVPKVLPLMTYAQALQQLPQETAKLLMSLNRAQ 175
Query: 219 PLVTALSSSRNESSGLI-IVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
LS R +S ++ +VGPEG +TEKE + +AG +V LG LR ETA++A +A
Sbjct: 176 ----KLSDVRPQSGKVVFMVGPEGGWTEKEEQQAFDAGFQSVTLGKRVLRTETASLAAIA 231
Query: 278 TL 279
T+
Sbjct: 232 TM 233
>gi|389694143|ref|ZP_10182237.1| RNA methyltransferase, RsmE family [Microvirga sp. WSM3557]
gi|388587529|gb|EIM27822.1| RNA methyltransferase, RsmE family [Microvirga sp. WSM3557]
Length = 248
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 101/234 (43%), Gaps = 25/234 (10%)
Query: 45 PRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PR F G + ++ + ++ VLRL + V +FNG+ G + R D
Sbjct: 9 PRLFIDAPLRAGSRIALDRGQANYLLNVLRLKAGETVLIFNGQDGEWRAEVAVEGRKAAD 68
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
+V +E L Q +V AF LK R D++V+K E+GA + P+LT +R
Sbjct: 69 LVCME---LTREQEPAPDVIYAFAPLKHARLDYMVQKAVEMGAGILQPVLTRRTQATRVN 125
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATP 219
D + N G R E + L + + +L V E P
Sbjct: 126 LDR--MRSNAIEAAEQCGILAIPGVREEE-------DLGRFLKGLEKERL-VVFCDENAP 175
Query: 220 L---VTALSSSRNESSGL-IIVGPEGDFTEKEVNKIVEAG--ATAVGLGPHRLR 267
+ V AL+ N+ +GL +IVGPEG FT++E +V A V LGP LR
Sbjct: 176 VSNPVEALAKLGNKQAGLAVIVGPEGGFTDQE-RALVAAHERCVCVSLGPRILR 228
>gi|238026201|ref|YP_002910432.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia glumae BGR1]
gi|237875395|gb|ACR27728.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia glumae BGR1]
Length = 253
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 104/246 (42%), Gaps = 26/246 (10%)
Query: 40 SRGGIPRFFS----QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGG-----LIE-GC 89
S IPRFF Q + E +VLRL D + LF+G GG L+E G
Sbjct: 4 STSAIPRFFVDRPLQADSEVMLPAEVARHVQVLRLEPGDPLTLFDGTGGQYRAELVELGK 63
Query: 90 IQRIDRT-GLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPL 148
+ RT G D LE T + V A G G + DWL+EK ELG ++ PL
Sbjct: 64 RNAVARTVGFDARELE---------TPYRVTLAQGIAGGDKMDWLIEKAVELGVTALAPL 114
Query: 149 LTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLL---PLVS 205
T + R G+ + G + + G R+ + P ++ L P +
Sbjct: 115 STARGV-VRLSGERADKRVAHWQGVVRAACEQCGRNRVP--AVAPIAELSAWLDALPPAA 171
Query: 206 QSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHR 265
++L + A+ AL ++ + +++GPEG + E + + G A+ LG
Sbjct: 172 DAELRLMLSPRASIAFAALPATAPAGTVTLLIGPEGGLSPAEEDAARKHGFQAIVLGARV 231
Query: 266 LRVETA 271
LR ETA
Sbjct: 232 LRTETA 237
>gi|384176167|ref|YP_005557552.1| hypothetical protein I33_2628 [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|349595391|gb|AEP91578.1| conserved hypothetical protein [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
Length = 256
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 101/238 (42%), Gaps = 27/238 (11%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE--DLKLVLPQH 113
+ G++ H+ V+R++ D++ + G + +Q + + + + +E + LP
Sbjct: 21 ITGEDVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSKDKVSCLVIEWTNENRELP-- 78
Query: 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHL-----------QSRKIGDN 162
V+ A G KG + +W+++K TELGA + P + + R
Sbjct: 79 --IKVYIASGLPKGDKLEWIIQKGTELGAHAYIPFQAARSVVKLDDKKAKKKRERWTKIA 136
Query: 163 GFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKL-AFVAIAEATPLV 221
+ Y + V+ Q+L + + + + Q ++ AF AI + P
Sbjct: 137 KEAAEQSYRNEVPRVMDVHSFQQLLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLP-- 194
Query: 222 TALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
SS LI+ GPEG TE EV ++ E GLGP LR ETA + L+ +
Sbjct: 195 -------KGSSLLIVFGPEGGLTEAEVERLTEQDGVTCGLGPRILRTETAPLYALSAI 245
>gi|227820965|ref|YP_002824935.1| 16S ribosomal RNA methyltransferase RsmE [Sinorhizobium fredii
NGR234]
gi|227339964|gb|ACP24182.1| conserved hypothetical protein [Sinorhizobium fredii NGR234]
Length = 245
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 96/216 (44%), Gaps = 24/216 (11%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
D+F ++ VLR + +FNG+ G + R L + A+E + PQ ++
Sbjct: 27 DQFNYLINVLRFGEGSSILVFNGRDGEWRAELSLPSRKQLVLTAVEQTR---PQPAPSDL 83
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSA 178
F LK GR D+LV+K E+GA + P++T+ H+Q K+G+ L N A
Sbjct: 84 VYLFAPLKTGRLDYLVQKAVEMGAGVLQPVMTQ-HVQG-KLGNLDRLRANVTEA--AEQC 139
Query: 179 FVYG------GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESS 232
V G ++L E++ N P + ++ F + + +E
Sbjct: 140 GVLGIPSVETPRKLEELLANWP----------RERRIIFCDEGNESQNPLPILGGISERR 189
Query: 233 GLIIVGPEGDFTEKEVNKIVEAG-ATAVGLGPHRLR 267
+++GPEG F+E E + TAV LGP LR
Sbjct: 190 LALLIGPEGGFSEAERVLLHSLDFVTAVPLGPRILR 225
>gi|221133775|ref|ZP_03560080.1| hypothetical protein GHTCC_02514 [Glaciecola sp. HTCC2999]
Length = 244
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 106/233 (45%), Gaps = 12/233 (5%)
Query: 40 SRGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
+R +P + ++ + H+ VLR+ + + LFNG G I + +
Sbjct: 4 TRVFVPEPLIVDAALTIDNESAHHLINVLRVKQDQPLVLFNGDGNEYSAQINEVHKR--K 61
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
V+ D KL + +++ + G KG R + +++K TELG +TP++T+ + K+
Sbjct: 62 VIVNVDAKLAIGAESKFPIHLGQGIAKGDRMETVLQKATELGVTEITPIITQ--RCNVKL 119
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPL-VSQSKLAFVAIAEAT 218
+ + + A G+ + +L+PP+ + Q ++ F A+
Sbjct: 120 SPERWAKKLVQWEKVIIGACEQSGRNVLP-ILHPPITLSEWCKQSTEQYRITFDPHAQQH 178
Query: 219 PLVTALSSSRNESSGL-IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
+ AL +++ G+ I++GPEG F+E E + G V +GP LR ET
Sbjct: 179 --LQALPVTQH---GIRILIGPEGGFSEAETYGAEQTGFNTVKIGPRVLRTET 226
>gi|418419903|ref|ZP_12993085.1| hypothetical protein MBOL_16310 [Mycobacterium abscessus subsp.
bolletii BD]
gi|364000449|gb|EHM21648.1| hypothetical protein MBOL_16310 [Mycobacterium abscessus subsp.
bolletii BD]
Length = 258
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 103/238 (43%), Gaps = 23/238 (9%)
Query: 44 IPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL--DVV 101
+PR S G V ++GDE H +VLR+ + V + +G G + +G + +DRTGL DV
Sbjct: 9 VPRVPSAGEQVLLDGDEGHHAARVLRMRVGEPVMVCDGAGEVGDGVVASVDRTGLAIDVT 68
Query: 102 ALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTP-----LLTELHLQS 156
+ P+ T V A K R++ V+ E GA V P ++
Sbjct: 69 GRWSVAAAAPKVT---VVQAL--PKSDRSELAVDLAVEAGADEVIPWQAQRCVSRWDAHK 123
Query: 157 RKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMV----LNPPMKIDGLLPLVSQSKLAFV 212
+ G + + + A+V LH L DG + LV L
Sbjct: 124 AEKGRRRWEAVAQAASRQSRRAYVPSVPELHSTAQLAELVGTRAADGAVVLV----LHES 179
Query: 213 AIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
A + L LSS+ SS ++IVGPEG ++E+ + AGA V LGP LR +
Sbjct: 180 AESGLGALGARLSSA---SSVVLIVGPEGGVADEELRILAGAGAAPVRLGPTVLRTSS 234
>gi|343491797|ref|ZP_08730176.1| 16S ribosomal RNA methyltransferase RsmE [Mycoplasma columbinum
SF7]
gi|343128251|gb|EGV00053.1| 16S ribosomal RNA methyltransferase RsmE [Mycoplasma columbinum
SF7]
Length = 224
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Query: 118 VFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANS 177
V A +K R +WL+EK TELG + PL+T K D + + + +
Sbjct: 69 VILAAPIIKMNRFEWLIEKATELGVTKIIPLIT-------KFTDGSLVKYDLARKYERHC 121
Query: 178 AFVYGG--QRLHEMV--LNPPMKIDGLLPLVSQSKLAFVAIAEA-TPLVTALSSSRNESS 232
V Q ++ P K++ L+ Q+K F+A A + +V L ++
Sbjct: 122 EIVKNAAEQSFRNIIPQFLKPTKLENLIN-EHQNKNIFLAYENANSSVVKELPTN----- 175
Query: 233 GLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
LIIVGPEG F+++E++ E + LG LR ETA + +L+ +
Sbjct: 176 SLIIVGPEGGFSQEEISYAQENNVKIISLGKTILRAETACLYVLSNI 222
>gi|15964524|ref|NP_384877.1| 16S ribosomal RNA methyltransferase RsmE [Sinorhizobium meliloti
1021]
gi|15073701|emb|CAC45343.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
Length = 245
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 95/211 (45%), Gaps = 14/211 (6%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
++F ++ VLRL + +FNG+ G I R +VA+E + PQ ++
Sbjct: 27 EQFNYLINVLRLGEGSSLLVFNGRDGEWRAEIAMPSRKQAVLVAVEQTR---PQPAPCDL 83
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSA 178
F LK GR D+LV+K E+GA + P++T+ H+Q KIG + N A
Sbjct: 84 VYLFAPLKVGRLDYLVQKAVEMGAGVLQPVMTQ-HVQG-KIGSLERVRANVIEA--AEQC 139
Query: 179 FVYGGQRLHEMVLNPPMKIDGLL-PLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIV 237
V G + E P K++ LL ++ F + + E +++
Sbjct: 140 GVLGIPAVEE-----PRKLEDLLIDWPRDRRIVFCDEGNDSQNPLPILEGIAERRLALLI 194
Query: 238 GPEGDFTEKEVNKIVEAG-ATAVGLGPHRLR 267
GPEG F+E E + + TA+ LGP LR
Sbjct: 195 GPEGGFSEAERDLLRSRDFVTAIPLGPRILR 225
>gi|449095038|ref|YP_007427529.1| 16S ribosomal RNA methyltransferase [Bacillus subtilis XF-1]
gi|449028953|gb|AGE64192.1| 16S ribosomal RNA methyltransferase [Bacillus subtilis XF-1]
Length = 256
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 101/238 (42%), Gaps = 27/238 (11%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE--DLKLVLPQH 113
+ G++ H+ V+R++ D++ + G + +Q + + + + +E + LP
Sbjct: 21 ITGEDVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSKDKVSCLVIEWTNENRELP-- 78
Query: 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHL-----------QSRKIGDN 162
V+ A G KG + +W+++K TELGA + P + + R
Sbjct: 79 --IKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIA 136
Query: 163 GFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKL-AFVAIAEATPLV 221
+ Y + V+ Q+L + + + + Q ++ AF AI + P
Sbjct: 137 KEAAEQSYRNEVPRVMDVHSFQQLLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLP-- 194
Query: 222 TALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
SS LI+ GPEG TE EV ++ E GLGP LR ETA + L+ +
Sbjct: 195 -------KGSSLLIVFGPEGGLTEAEVERLTEQDGVTCGLGPRILRTETAPLYALSAI 245
>gi|384083123|ref|ZP_09994298.1| hypothetical protein gproHI_07384 [gamma proteobacterium HIMB30]
Length = 235
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 104/244 (42%), Gaps = 26/244 (10%)
Query: 44 IPRFFSQG-----GIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDR--T 96
IPR ++ G V + ++++VLR + LF+G G E ++ I + T
Sbjct: 3 IPRLYADNFSHATGEVSLSERNHHYLSRVLRAKPGQMIRLFDGCGRTGEATVKAISKRET 62
Query: 97 GLDVVALEDL-KLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQ 155
++++ + D LP V +K R DW ++K TELG ++ P++T+
Sbjct: 63 TIELLTISDSPDRRLP------VTLGLALIKSDRFDWALQKATELGVSAIQPIITQF-TD 115
Query: 156 SRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIA 215
S D + + + N+ L L P ++ L L Q+ +A A
Sbjct: 116 SPPKADRLEKKWSHWQEILVNACEQSENNWL--PALREPRQLHE-LELPKQTIIAHPA-- 170
Query: 216 EATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIAL 275
T + L++VGPEG F++ E++ + + + LGP LR ETA I
Sbjct: 171 ------TDSVKINPDHEALLLVGPEGGFSDAELDVLQKKQVKPMSLGPRILRTETAAIVG 224
Query: 276 LATL 279
L L
Sbjct: 225 LTLL 228
>gi|187935444|ref|YP_001885097.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum B
str. Eklund 17B]
gi|187723597|gb|ACD24818.1| conserved surface protein [Clostridium botulinum B str. Eklund 17B]
Length = 254
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 106/228 (46%), Gaps = 20/228 (8%)
Query: 55 RVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHT 114
++ GD+ H+ KVLRL+ ++V L N +G G IQ + + + V LE+L +
Sbjct: 17 KILGDDVKHIYKVLRLNEGEKVVLNNCEGKEYLGEIQSVGKQEVIVNILEELS--TNNES 74
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFI 174
+ N+ G KG + D +V+K TELG + P++T+ + + G+ L I
Sbjct: 75 RVNITLFQGLPKGQKMDLIVQKGTELGIKEFVPIITD-RVDVKLKGEFKKLE---RLNRI 130
Query: 175 ANSAFVYGGQRL----HEMV-----LNPPMKIDGLL-PLVSQSKLAFVA-IAEATPLVTA 223
A A + + E+V LN +D +L P + F + + E +
Sbjct: 131 ALEAAKQSKRSIIPNVREVVEFDEALNELQGLDLILVPYENAENFGFKSLVKELSDKNVD 190
Query: 224 LSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA 271
L+S N I++GPEG F E E+ + GA + LG LR ETA
Sbjct: 191 LNSIENIG---IVIGPEGGFEESEIETLKHKGAYIITLGNRILRTETA 235
>gi|325290539|ref|YP_004266720.1| ribosomal RNA small subunit methyltransferase E [Syntrophobotulus
glycolicus DSM 8271]
gi|324965940|gb|ADY56719.1| Ribosomal RNA small subunit methyltransferase E [Syntrophobotulus
glycolicus DSM 8271]
Length = 245
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 110/234 (47%), Gaps = 20/234 (8%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQ-HT 114
++G+E H+T+VLRL + + F+ G L G I+ I++ + ++ +P+
Sbjct: 16 IDGEELHHLTRVLRLGPGEEILGFDHSGRLWRGAIREINK---EQAVCSVIRAEIPETEA 72
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNFYY 171
+ V+ G KG + + +++K TELG + PL T + L+ K + +
Sbjct: 73 KVKVYLIVGLSKGEKMELVIQKGTELGMTGLIPLRTRRSVMKLEGTKAEER-----VDRW 127
Query: 172 GFIANSAFVYGGQRLHEMVLNPPMKIDGL---LPLVSQSKLAFVAIAEATPLVTALSSSR 228
IA A G R+ + + P + L LP +Q + F E T + A S
Sbjct: 128 RKIAGEAVKQCG-RVIQPAVAPVLDWQDLPAYLPADTQWLIPFE--GEKTVSLKACLKSF 184
Query: 229 NESSGL-IIVGPEGDFTEKEVNKIVEA-GATAVGLGPHRLRVETATIALLATLM 280
+ S + +I+GPEG F +EV E GA ++ LG LR ETA IA L ++
Sbjct: 185 DPSLPMALIIGPEGGFEPQEVLWAKEKLGAKSISLGSRILRAETAAIAALTIVL 238
>gi|254559584|ref|YP_003066679.1| hypothetical protein METDI1041 [Methylobacterium extorquens DM4]
gi|254266862|emb|CAX22661.1| conserved hypothetical protein [Methylobacterium extorquens DM4]
Length = 250
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 104/244 (42%), Gaps = 23/244 (9%)
Query: 45 PRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PR F ++G ++ +E + ++ VLR + + V LFNG+ G + R D
Sbjct: 9 PRLFVEADLAEGRVLPLERAQANYLLTVLRRAEGEPVLLFNGRDGEWRAELVPQGRKSAD 68
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
+ + + PQ ++ F LK GR D++ +K E+GA + P+ T R
Sbjct: 69 LRVVVQTR---PQPAPADLHYLFAPLKTGRIDYMAQKAVEMGAGRLQPVFTRFTQGERIK 125
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA-- 217
D L N A + + E P ++ G L + ++L +A
Sbjct: 126 LDR--LQANAIEA--AEQCGILSVPEIGE-----PARLPGCLDALEANRLLVFCDEDASV 176
Query: 218 TPLVTAL---SSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAV-GLGPHRLRVETATI 273
T V AL + N ++VGPEG F +E I T V LGP LR +TA +
Sbjct: 177 TDPVAALRGAADPANPPPLAVLVGPEGGFHAEERALIAARPNTVVLSLGPRILRADTAAV 236
Query: 274 ALLA 277
A+LA
Sbjct: 237 AVLA 240
>gi|225686530|ref|YP_002734502.1| 16S ribosomal RNA methyltransferase RsmE [Brucella melitensis ATCC
23457]
gi|384446876|ref|YP_005661094.1| 16S ribosomal RNA methyltransferase RsmE [Brucella melitensis NI]
gi|225642635|gb|ACO02548.1| conserved hypothetical protein [Brucella melitensis ATCC 23457]
gi|349744873|gb|AEQ10415.1| 16S ribosomal RNA methyltransferase RsmE [Brucella melitensis NI]
Length = 242
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 95/208 (45%), Gaps = 16/208 (7%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
++T VLR+ D V +FNG+ G + +Q R L LE L+ PQ + F
Sbjct: 25 YLTHVLRMKEGDEVLVFNGRDGEWKASLQPEGRKRL---LLEPLEQTRPQPKPSELIYCF 81
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
LK GR D++V+K E+GA + P++T+ H Q+ ++G + A V
Sbjct: 82 APLKQGRLDYMVQKAVEMGAGVLQPVITQ-HTQALRLGTERIRANAIE---AAEQCGVLS 137
Query: 183 GQRLHEMVLNPPMKIDGLLPLVSQS-KLAFVAIA-EATPLVTALSSSRNESSGLIIVGPE 240
E ++ D L S +L F E+ ++ L+ SGL+I GPE
Sbjct: 138 LPDCREA-----LRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLEPGPSGLLI-GPE 191
Query: 241 GDFTEKEVNKIVEAG-ATAVGLGPHRLR 267
G F+E+E + TA+ LGP LR
Sbjct: 192 GGFSEEERQLLHRLPFVTAIPLGPRILR 219
>gi|289423857|ref|ZP_06425650.1| ribosomal RNA small subunit methyltransferase E [Peptostreptococcus
anaerobius 653-L]
gi|289155634|gb|EFD04306.1| ribosomal RNA small subunit methyltransferase E [Peptostreptococcus
anaerobius 653-L]
Length = 258
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 103/231 (44%), Gaps = 23/231 (9%)
Query: 58 GDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRT--GLDVVALEDLKLVLPQHTQ 115
GD+ H++KVLR S D +E+ +G+ I +D+T GL ++ +D+ P +
Sbjct: 22 GDDVKHISKVLRYSVGDELEVCDGQNKEYICRIDSMDKTEIGLSIIEEKDVDRESPIRIK 81
Query: 116 WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNFYY- 171
G K + + +++K TE G + + T +++ +K Y
Sbjct: 82 L----YQGLPKSTKMEIILQKLTECGVAEIILVNTARSVVNIDDKKSEKKLDRWQRIVYE 137
Query: 172 -------GFIANSAFVYG-GQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTA 223
G I + +Y + L +M +N ++P + L + + +
Sbjct: 138 AAKQSKRGIIPDLKGIYSFKEALRDMEVNDI----NIMPYEEEGSLGIKDLLRSEGIQQI 193
Query: 224 LSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274
+ +++ + G I +GPEG FTE E K+ EAG +V +GP R ETA+I
Sbjct: 194 IKENKSATIG-IFIGPEGGFTEDENAKVKEAGGHSVKMGPRIFRTETASIV 243
>gi|240137404|ref|YP_002961875.1| hypothetical protein MexAM1_META1p0669 [Methylobacterium extorquens
AM1]
gi|418059043|ref|ZP_12697002.1| Ribosomal RNA small subunit methyltransferase E [Methylobacterium
extorquens DSM 13060]
gi|240007372|gb|ACS38598.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
gi|373567385|gb|EHP93355.1| Ribosomal RNA small subunit methyltransferase E [Methylobacterium
extorquens DSM 13060]
Length = 250
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 104/244 (42%), Gaps = 23/244 (9%)
Query: 45 PRFF-----SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
PR F ++G ++ +E + ++ VLR + + V LFNG+ G I R D
Sbjct: 9 PRLFVEADLAEGRVLPLERAQANYLLTVLRRAEGEPVLLFNGRDGEWRAEIVPQGRKSAD 68
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
+ + + PQ ++ F LK GR D++ +K E+GA + P+ T R
Sbjct: 69 LRVVAQTR---PQPAPADLHYLFAPLKTGRIDYMAQKAVEMGAGRLQPVFTRFTQGERIK 125
Query: 160 GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEA-- 217
D L N A + + E P ++ L + ++L +A
Sbjct: 126 LDR--LQANAIEA--AEQCGILSVPEIGE-----PARLPACLDALEANRLLVFCDEDASV 176
Query: 218 TPLVTAL---SSSRNESSGLIIVGPEGDFTEKEVNKIVEAGAT-AVGLGPHRLRVETATI 273
T V AL + N ++VGPEG F +E I T A+ LGP LR +TA +
Sbjct: 177 TDPVAALRGAADPANPPPLAVLVGPEGGFHAEERALIAARPNTVALSLGPRILRADTAAV 236
Query: 274 ALLA 277
A+LA
Sbjct: 237 AVLA 240
>gi|315652517|ref|ZP_07905501.1| RsmE family RNA methyltransferase [Lachnoanaerobaculum saburreum
DSM 3986]
gi|315485233|gb|EFU75631.1| RsmE family RNA methyltransferase [Lachnoanaerobaculum saburreum
DSM 3986]
Length = 245
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 105/232 (45%), Gaps = 15/232 (6%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQ 115
+ G + H+ VLR+ + + L + KG C +I+ D V L+ L+ + +
Sbjct: 18 ISGSDVNHIVNVLRMKIGEEL-LISVKGDWDYLC--KIEEIENDRVNLKLLESMEQRELP 74
Query: 116 WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIA 175
+ G K + + +++K ELG + P+ T + +I + + IA
Sbjct: 75 IKLTLLQGIPKSDKIEMIIQKAIELGVSEIIPVKTNRVVV--RIDKKKTQAKVNRWNAIA 132
Query: 176 NSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFV------AIAEATPLVTALSSSRN 229
SA + + VLNP +D L +V + + I + ++ +L+S N
Sbjct: 133 QSAAKQSKRSIIPKVLNPQT-LDNALEIVKDYGVKLLPYENADGIKKTKDILNSLNSKNN 191
Query: 230 ESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLML 281
+ + +GPEG F E EV K ++G + LG LR ETA +ALL+ +M+
Sbjct: 192 IA---VFIGPEGGFEEAEVKKSTDSGFEVITLGKRILRTETAGLALLSNIMI 240
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,407,542,649
Number of Sequences: 23463169
Number of extensions: 179147328
Number of successful extensions: 426842
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2375
Number of HSP's successfully gapped in prelim test: 1057
Number of HSP's that attempted gapping in prelim test: 419643
Number of HSP's gapped (non-prelim): 5424
length of query: 291
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 150
effective length of database: 9,050,888,538
effective search space: 1357633280700
effective search space used: 1357633280700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.9 bits)