BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045537
(291 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KW2|A Chain A, Crystal Structure Of Probable Rrna-Methyltransferase From
Porphyromonas Gingivalis
pdb|3KW2|B Chain B, Crystal Structure Of Probable Rrna-Methyltransferase From
Porphyromonas Gingivalis
Length = 257
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 87/218 (39%), Gaps = 9/218 (4%)
Query: 55 RVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHT 114
R+ DE H+ +VLR DR+ L +G+G + I+ DR V P
Sbjct: 18 RLPDDEAGHILRVLRXQAGDRLRLTDGRGSFFDAVIETADRKSCYVSVCGQESWQKPWRD 77
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNF---YY 171
+ + A T + R +W +EK E+G V + +E H + R+I
Sbjct: 78 RITI-AIAPTKQSERXEWXLEKLVEIGVDEVVFIESE-HSERRRIKAERLERIAISAXKQ 135
Query: 172 GFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNES 231
A+ + + ++ + P L+ V ++ A + P
Sbjct: 136 SLKASFPVIRVNIPIQTVIADTPKAAVRLIAYVDEAVRAEITQGRGYP----SDFYHVGQ 191
Query: 232 SGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVE 269
LI++GPEGDF+ EV + AG V LG RLR E
Sbjct: 192 DVLILIGPEGDFSPSEVESALLAGFAPVSLGESRLRTE 229
>pdb|4J3C|A Chain A, Crystal Structure Of 16s Ribosomal Rna Methyltransferase
Rsme
pdb|4J3C|B Chain B, Crystal Structure Of 16s Ribosomal Rna Methyltransferase
Rsme
Length = 267
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 94/213 (44%), Gaps = 14/213 (6%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
++F ++ VLRL + +FNG+ G I R +VA+E + PQ ++
Sbjct: 49 EQFNYLINVLRLGEGSSLLVFNGRDGEWRAEIAXPSRKQAVLVAVEQTR---PQPAPCDL 105
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSA 178
F LK GR D+LV+K E GA + P+ T+ H+Q KIG + N A
Sbjct: 106 VYLFAPLKVGRLDYLVQKAVEXGAGVLQPVXTQ-HVQG-KIGSLERVRANVIEA--AEQC 161
Query: 179 FVYGGQRLHEMVLNPPMKIDGLL-PLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIV 237
V G + E P K++ LL ++ F + + E +++
Sbjct: 162 GVLGIPAVEE-----PRKLEDLLIDWPRDRRIVFCDEGNDSQNPLPILEGIAERRLALLI 216
Query: 238 GPEGDFTEKEVNKIVEAG-ATAVGLGPHRLRVE 269
GPEG F+E E + + TA+ LGP LR +
Sbjct: 217 GPEGGFSEAERDLLRSRDFVTAIPLGPRILRAD 249
>pdb|1VHK|A Chain A, Crystal Structure Of An Hypothetical Protein
pdb|1VHK|B Chain B, Crystal Structure Of An Hypothetical Protein
pdb|1VHK|C Chain C, Crystal Structure Of An Hypothetical Protein
pdb|1VHK|D Chain D, Crystal Structure Of An Hypothetical Protein
Length = 268
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 93/228 (40%), Gaps = 27/228 (11%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE--DLKLVLPQH 113
+ G+E H+ V R + D++ + G + +Q + + + + +E + LP
Sbjct: 23 ITGEEVHHIVNVXRXNEGDQIICCSQDGFEAKCELQSVSKDKVSCLVIEWTNENRELP-- 80
Query: 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHL-----------QSRKIGDN 162
V+ A G KG + +W+++K TELGA + P + + R
Sbjct: 81 --IKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIA 138
Query: 163 GFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKL-AFVAIAEATPLV 221
+ Y + V+ Q+L + + + Q ++ AF AI + P
Sbjct: 139 KEAAEQSYRNEVPRVXDVHSFQQLLQRXQDFDKCVVAYEESSKQGEISAFSAIVSSLPKG 198
Query: 222 TALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVE 269
++L LI+ GPEG TE EV ++ E GLGP LR E
Sbjct: 199 SSL---------LIVFGPEGGLTEAEVERLTEQDGVTCGLGPRILRTE 237
>pdb|1V6Z|A Chain A, Crystal Structure Of Tt1573 From Thermus Thermophilus
pdb|1V6Z|B Chain B, Crystal Structure Of Tt1573 From Thermus Thermophilus
pdb|2CX8|A Chain A, Crystal Structure Of Methyltransferase With Ligand(Sah)
pdb|2CX8|B Chain B, Crystal Structure Of Methyltransferase With Ligand(Sah)
pdb|2Z0Y|A Chain A, Crystal Structure Of Ttha0657-Sam Complex
pdb|2Z0Y|B Chain B, Crystal Structure Of Ttha0657-Sam Complex
Length = 228
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 98/226 (43%), Gaps = 20/226 (8%)
Query: 46 RFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDR-TGLDVVALE 104
R FS G + E H+ +VLR DR +F+G+ E + +D L LE
Sbjct: 5 RAFSPGLTGVLPLRETRHLVEVLRARVGDRFTVFDGER---EALAEVVDLGPPLRYRVLE 61
Query: 105 DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGF 164
+ + + ++ A LKG + +V TELGA + PL+T H ++ G+
Sbjct: 62 ERRPEREVGVEVVLYVAL--LKGDKLAEVVRAATELGATRIQPLVTR-HSVPKEXGEGKL 118
Query: 165 LSCNFYYGFIANSAFVYGGQRLHEMVLNP-PMKIDGLLPLVSQSKLAFVAIAEATPLVTA 223
+A A G+ + VL P P+K +P V+Q +A V AT V
Sbjct: 119 RRLRA----VALEAAKQSGRVVVPEVLPPIPLKA---VPQVAQGLVAHVG---ATARVRE 168
Query: 224 LSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVE 269
+ E + VGPEG F E+EV + G T V LG LR E
Sbjct: 169 VLDP--EKPLALAVGPEGGFAEEEVALLEARGFTPVSLGRRILRAE 212
>pdb|2EGV|A Chain A, Crystal Structure Of Rrna Methyltransferase With Sam
Ligand
pdb|2EGV|B Chain B, Crystal Structure Of Rrna Methyltransferase With Sam
Ligand
pdb|2EGW|A Chain A, Crystal Structure Of Rrna Methyltransferase With Sah
Ligand
pdb|2EGW|B Chain B, Crystal Structure Of Rrna Methyltransferase With Sah
Ligand
Length = 229
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 83/187 (44%), Gaps = 12/187 (6%)
Query: 84 GLIEGC-IQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGA 142
G I C ++R D+ + +E+L+ LP ++ + T+ D +V + TELG
Sbjct: 41 GKIYVCKVRREDKREISCEIVEELETKLPPK-DITLYQSV-TVDLKTMDTIVRQATELGV 98
Query: 143 QSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLP 202
+ P+++E Q + L + I A + +R M + P+++ L+P
Sbjct: 99 LTFVPIISERSFQK----EEAILKKTEKWKRIVIEA-MKQSRRPIPMEIKKPVRLSDLIP 153
Query: 203 LVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLG 262
++ + P L + + ++VGPEG F+++E + E G +V L
Sbjct: 154 ESEENIILDNFYEGVKPKDVNLEAK----TYSVVVGPEGGFSKRESQILREKGFKSVLLE 209
Query: 263 PHRLRVE 269
P+ LR E
Sbjct: 210 PYTLRTE 216
>pdb|4E8B|A Chain A, Crystal Structure Of 16s Rrna Methyltransferase Rsme From
E.Coli
Length = 251
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 93/236 (39%), Gaps = 23/236 (9%)
Query: 44 IPRFF------SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTG 97
IPR + S I E D H+ +VLR+ ++LF+G + + I +
Sbjct: 3 IPRIYHPEPLTSHSHIALCE-DAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61
Query: 98 LDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHL 154
++V LE + + + ++ +G + ++ ++K ELG +TPL +E + L
Sbjct: 62 VEVKVLEG--QIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKL 119
Query: 155 QSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS-KLAFVA 213
S ++ + + G R+ E + P M ++ + KL
Sbjct: 120 DSERLNKK----LQQWQKIAIAACEQCGRNRVPE--IRPAMDLEAWCAEQDEGLKLNLHP 173
Query: 214 IAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVE 269
A + L R +++GPEG + E+ T + LGP LR E
Sbjct: 174 RASNSINTLPLPVERVR----LLIGPEGGLSADEIAMTARYQFTDILLGPRVLRTE 225
>pdb|1Z85|A Chain A, Crystal Structure Of A Predicted Rna Methyltransferase
(Tm1380) From Thermotoga Maritima Msb8 At 2.12 A
Resolution
pdb|1Z85|B Chain B, Crystal Structure Of A Predicted Rna Methyltransferase
(Tm1380) From Thermotoga Maritima Msb8 At 2.12 A
Resolution
Length = 234
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 84/223 (37%), Gaps = 55/223 (24%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
H +V+RL D +E +G G ++ + + ++ + + +V
Sbjct: 34 HHXRVVRLKEGDVIEATDGNGFSYTCILKSLKKKTAAAKIVKVEEKEKEPTEKLSVVVPI 93
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYG 182
G + R +L+EKC ELG + F++ F +
Sbjct: 94 G--RWERTRFLIEKCVELGVDEI-----------------------FFHKFERSQ----- 123
Query: 183 GQRLHEMVLNPPMKI---------DGLLPLVS-QSKLAFVAIAEATPLVTALSSSRN--- 229
HE+ L+ + L P VS KL F + L +S+N
Sbjct: 124 ----HEISLDKAKIVVREAAKQCKRYLFPKVSFLEKLEF----SGNVITLDLDASQNLLD 175
Query: 230 ---ESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVE 269
E S ++VGPEG F+EKE +++ + T V LG LR E
Sbjct: 176 ANLEGSITVVVGPEGGFSEKE-RELLRSSTTIVSLGKKILRFE 217
>pdb|1VHY|A Chain A, Crystal Structure Of Haemophilus Influenzae Protein
Hi0303, Pfam Duf558
pdb|1VHY|B Chain B, Crystal Structure Of Haemophilus Influenzae Protein
Hi0303, Pfam Duf558
Length = 257
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
D H+ +VLR + +++ELF+G + I ++ + V L + + + + +
Sbjct: 25 DAANHVARVLRXTEGEQLELFDGSNHIYPAKIIESNKKSVKVEILG--RELADKESHLKI 82
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE 151
+G R ++ ++K ELG +TPL +E
Sbjct: 83 HLGQVISRGERXEFTIQKSVELGVNVITPLWSE 115
>pdb|1NXZ|A Chain A, X-Ray Crystal Structure Of Protein Yggj_haein Of
Haemophilus Influenzae. Northeast Structural Genomics
Consortium Target Ir73.
pdb|1NXZ|B Chain B, X-Ray Crystal Structure Of Protein Yggj_haein Of
Haemophilus Influenzae. Northeast Structural Genomics
Consortium Target Ir73
Length = 246
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 59 DEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118
D H+ +VLR + +++ELF+G + I ++ + V L + + + + +
Sbjct: 22 DAANHVARVLRXTEGEQLELFDGSNHIYPAKIIESNKKSVKVEILG--RELADKESHLKI 79
Query: 119 FAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE 151
+G R ++ ++K ELG +TPL +E
Sbjct: 80 HLGQVISRGERXEFTIQKSVELGVNVITPLWSE 112
>pdb|3H3D|X Chain X, Drosophila Pumilio Rna Binding Domain (Puf Domain)
pdb|3H3D|Y Chain Y, Drosophila Pumilio Rna Binding Domain (Puf Domain)
Length = 323
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 17/103 (16%)
Query: 133 LVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLN 192
++E CT A+ TP+L ELH + ++ + Y ++ +G Q +++N
Sbjct: 188 ILEHCT---AEQTTPILDELHEHTEQLIQDQ------YGNYVIQHVLEHGKQEDKSILIN 238
Query: 193 PPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLI 235
+ G + ++SQ K A + + ++R E +GLI
Sbjct: 239 S---VRGKVLVLSQHKFASNVVEKCVT-----HATRGERTGLI 273
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 80 NGKGGLIEGC--IQ-----RIDRTGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRA 130
NG GG +E C +Q +I R ++V +E LK VLP T N + +KG A
Sbjct: 83 NGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSA 140
>pdb|1UMY|A Chain A, Bhmt From Rat Liver
pdb|1UMY|B Chain B, Bhmt From Rat Liver
pdb|1UMY|C Chain C, Bhmt From Rat Liver
pdb|1UMY|D Chain D, Bhmt From Rat Liver
Length = 407
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 211 FVAIAEATPLVTALSSSRNESSGLIIVGPEGDFT-----EKEVNKIVEAGATAVGLGPH 264
F + EA V AL +S + + +GPEGD E V ++V+AGA VG+ H
Sbjct: 161 FEHVEEAVWAVEALKTSGKPIAATMCIGPEGDLHGVSPGECAV-RLVKAGAAIVGVNCH 218
>pdb|4FCC|A Chain A, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|B Chain B, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|C Chain C, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|D Chain D, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|E Chain E, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|F Chain F, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|G Chain G, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|H Chain H, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|I Chain I, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|J Chain J, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|K Chain K, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|L Chain L, Glutamate Dehydrogenase From E. Coli
pdb|4FHN|X Chain X, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 450
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 52 GIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLP 111
G + V G E M +++ +N+ +F GKG G + R + TG +V + +L
Sbjct: 170 GDIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEA--MLK 227
Query: 112 QHTQ-WNVFAAFGTLKGGRADWLVEKCTELGAQSVT 146
+H + + G A + +EK E GA+ +T
Sbjct: 228 RHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVIT 263
>pdb|2YFG|E Chain E, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
Length = 447
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 52 GIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLP 111
G + V G E M +++ +N+ +F GKG G + R + TG +V + +L
Sbjct: 167 GDIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEA--MLK 224
Query: 112 QHTQ-WNVFAAFGTLKGGRADWLVEKCTELGAQSVT 146
+H + + G A + +EK E GA+ +T
Sbjct: 225 RHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVIT 260
>pdb|3SBO|A Chain A, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|B Chain B, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|C Chain C, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|D Chain D, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|E Chain E, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|F Chain F, Structure Of E.Coli Gdh From Native Source
pdb|2YFG|A Chain A, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|B Chain B, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|C Chain C, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|D Chain D, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|F Chain F, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
Length = 447
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 52 GIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLP 111
G + V G E M +++ +N+ +F GKG G + R + TG +V + +L
Sbjct: 167 GDIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEA--MLK 224
Query: 112 QHTQ-WNVFAAFGTLKGGRADWLVEKCTELGAQSVT 146
+H + + G A + +EK E GA+ +T
Sbjct: 225 RHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVIT 260
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,886,335
Number of Sequences: 62578
Number of extensions: 309358
Number of successful extensions: 804
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 787
Number of HSP's gapped (non-prelim): 22
length of query: 291
length of database: 14,973,337
effective HSP length: 98
effective length of query: 193
effective length of database: 8,840,693
effective search space: 1706253749
effective search space used: 1706253749
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)