BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045537
(291 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8K9E4|RSME_BUCAP Ribosomal RNA small subunit methyltransferase E OS=Buchnera
aphidicola subsp. Schizaphis graminum (strain Sg)
GN=rsmE PE=3 SV=1
Length = 246
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 113/261 (43%), Gaps = 47/261 (18%)
Query: 41 RGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV 100
R I F ++ + ++ KVLR+ D++E+FN + I I+ +++
Sbjct: 7 RIYIKYFLQINQVISLSKSYTHYIKKVLRMKKKDKLEIFNNTNYIFFSEILEINNHTIEI 66
Query: 101 VALEDLKLVLPQHTQWNVFAAFGTL--KGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
+ L+ ++ + + G + K + ++ ++K ELG ++TPL +E
Sbjct: 67 IILKKQ----IKNLESPLLIHLGQVISKNEKMNFSIQKSVELGVNTITPLFSEY------ 116
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLH--EMVLN----------PPMKI-DGLLPLV- 204
CNF N + +++H +V++ P +K + +LP
Sbjct: 117 --------CNF-----QNKLICFPKKKIHWENIVISSCEQCHRNNIPEIKNPEYILPWCK 163
Query: 205 ----SQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVG 260
+++K+ F AT + L N +++G EG F+ E+ KI++ G +
Sbjct: 164 RTYENETKIVFSP--SATFTINELPEKIN--CVRLLIGSEGGFSFLEIEKIIQYGFIPIK 219
Query: 261 LGPHRLRVETATIALLATLML 281
LGP LR ETA IA + L +
Sbjct: 220 LGPRILRTETAVIAAITALQI 240
>sp|P54461|RSME_BACSU Ribosomal RNA small subunit methyltransferase E OS=Bacillus
subtilis (strain 168) GN=rsmE PE=1 SV=1
Length = 256
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 101/238 (42%), Gaps = 27/238 (11%)
Query: 56 VEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE--DLKLVLPQH 113
+ G+E H+ V+R++ D++ + G + +Q + + + + +E + LP
Sbjct: 21 ITGEEVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSKDKVSCLVIEWTNENRELP-- 78
Query: 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHL-----------QSRKIGDN 162
V+ A G KG + +W+++K TELGA + P + + R
Sbjct: 79 --IKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIA 136
Query: 163 GFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKL-AFVAIAEATPLV 221
+ Y + V+ Q+L + + + + Q ++ AF AI + P
Sbjct: 137 KEAAEQSYRNEVPRVMDVHSFQQLLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLP-- 194
Query: 222 TALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
SS LI+ GPEG TE EV ++ E GLGP LR ETA + L+ +
Sbjct: 195 -------KGSSLLIVFGPEGGLTEAEVERLTEQDGVTCGLGPRILRTETAPLYALSAI 245
>sp|O66552|RSME_AQUAE Ribosomal RNA small subunit methyltransferase E OS=Aquifex aeolicus
(strain VF5) GN=rsmE PE=1 SV=1
Length = 229
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 92/198 (46%), Gaps = 12/198 (6%)
Query: 84 GLIEGC-IQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGA 142
G I C ++R D+ + +E+L+ LP ++ + T+ D +V + TELG
Sbjct: 41 GKIYVCKVRREDKREISCEIVEELETKLPPK-DITLYQSV-TVDLKTMDTIVRQATELGV 98
Query: 143 QSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLP 202
+ P+++E Q + L + I A + +R M + P+++ L+P
Sbjct: 99 LTFVPIISERSFQK----EEAILKKTEKWKRIVIEA-MKQSRRPIPMEIKKPVRLSDLIP 153
Query: 203 LVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLG 262
++ + P L + + ++VGPEG F+++E + E G +V L
Sbjct: 154 ESEENIILDNFYEGVKPKDVNLEAK----TYSVVVGPEGGFSKRESQILREKGFKSVLLE 209
Query: 263 PHRLRVETATIALLATLM 280
P+ LR ETA +++++ LM
Sbjct: 210 PYTLRTETAVVSIVSILM 227
>sp|P67202|RSME_MYCTU Ribosomal RNA small subunit methyltransferase E OS=Mycobacterium
tuberculosis GN=rsmE PE=3 SV=1
Length = 262
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 98/237 (41%), Gaps = 37/237 (15%)
Query: 51 GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVL 110
G + V+GDE +H V R+ +++ L +G G L +++ R GL L
Sbjct: 15 GAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRGGLRARVLR------ 68
Query: 111 PQHTQWNVFAAFGTL-------KGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNG 163
+W+V + K R++ +E TE GA + L Q+ + N
Sbjct: 69 ----RWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAF------LAWQAARCVAN- 117
Query: 164 FLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLL--PLVSQSKLAFVAIA------ 215
+ G A V R PP +DG+L P++ Q VA
Sbjct: 118 WDGARVDKGLRRWRAVVRSAARQSRRARIPP--VDGVLSTPMLVQRVREEVAAGAAVLVL 175
Query: 216 --EATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
EAT + ++++ S +++VGPEG E+ + +AGA AV LGP LR T
Sbjct: 176 HEEATERIVDIAAA-QAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTST 231
>sp|P67203|RSME_MYCBO Ribosomal RNA small subunit methyltransferase E OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) GN=rsmE PE=3
SV=1
Length = 262
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 98/237 (41%), Gaps = 37/237 (15%)
Query: 51 GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVL 110
G + V+GDE +H V R+ +++ L +G G L +++ R GL L
Sbjct: 15 GAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRGGLRARVLR------ 68
Query: 111 PQHTQWNVFAAFGTL-------KGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNG 163
+W+V + K R++ +E TE GA + L Q+ + N
Sbjct: 69 ----RWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAF------LAWQAARCVAN- 117
Query: 164 FLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLL--PLVSQSKLAFVAIA------ 215
+ G A V R PP +DG+L P++ Q VA
Sbjct: 118 WDGARVDKGLRRWRAVVRSAARQSRRARIPP--VDGVLSTPMLVQRVREEVAAGAAVLVL 175
Query: 216 --EATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270
EAT + ++++ S +++VGPEG E+ + +AGA AV LGP LR T
Sbjct: 176 HEEATERIVDIAAA-QAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTST 231
>sp|P44627|RSME_HAEIN Ribosomal RNA small subunit methyltransferase E OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=rsmE PE=1 SV=1
Length = 245
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 104/230 (45%), Gaps = 27/230 (11%)
Query: 63 HMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAF 122
H+ +VLR++ +++ELF+G + I ++ + V L + + + + +
Sbjct: 27 HVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKSVKVEILG--RELADKESHLKIHLGQ 84
Query: 123 GTLKGGRADWLVEKCTELGAQSVTPLLTE---LHLQSRKIGDNGFLSCNFYYGFIANSAF 179
+G R ++ ++K ELG +TPL +E + L + ++ D + IA +A
Sbjct: 85 VISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDAERM-DKKIQQ----WQKIAIAAC 139
Query: 180 VYGGQRLHEMVLNPPMKI-------DGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESS 232
G+ + + P MK+ DG L L + + + P + A
Sbjct: 140 EQCGRNIVPEI-RPLMKLQDWCAENDGALKLNLHPRAHYSI--KTLPTIPA-------GG 189
Query: 233 GLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLMLC 282
+++G EG + +E+ + + G T + LG LR ETA++A ++ L +C
Sbjct: 190 VRLLIGSEGGLSAQEIAQTEQQGFTEILLGKRVLRTETASLAAISALQIC 239
>sp|P57488|RSME_BUCAI Ribosomal RNA small subunit methyltransferase E OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain APS)
GN=rsmE PE=3 SV=1
Length = 253
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 96/236 (40%), Gaps = 34/236 (14%)
Query: 58 GDEFWH-MTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDL--KLVLPQHT 114
DE H +TKVLR+ D +E+FN + I I + + + + + L P H
Sbjct: 30 SDENRHYVTKVLRMKIEDILEIFNNTHYIFFAKIIDISKKIIKIQTFKKILKNLESPLHI 89
Query: 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTEL-HLQSRKIGDNGFLSCNFYYGF 173
+ K + D+ ++K E+G +++TPL E H Q ++I + + +
Sbjct: 90 HLGQVIS----KNEKMDFTIQKSIEIGVKTITPLFFENDHFQKKRINFSNKIK---RWEK 142
Query: 174 IANSAFVYGGQRLHEMVLNPPMKI----------DGLLPLVSQSKLAFVAIAEATPLVTA 223
IA SA + + + PM + D + +S L + E +
Sbjct: 143 IAISACRQCNRNIIPKI-KIPMNVFHWCENNQNNDKKIIFHPKSTLTMKCLTEPIKYIQ- 200
Query: 224 LSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
II+G E F E KI++ G + LGP LR ETA++ + L
Sbjct: 201 -----------IIIGSERGFFNDEFQKIIKYGFIPIRLGPRILRTETASVVAITAL 245
>sp|Q92J59|RSME_RICCN Ribosomal RNA small subunit methyltransferase E OS=Rickettsia
conorii (strain ATCC VR-613 / Malish 7) GN=rsmE PE=3
SV=2
Length = 244
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 90/230 (39%), Gaps = 14/230 (6%)
Query: 40 SRGGIPRFFSQGGIVRVEGDEFWHMTK-VLRLSTNDRVELFNGKGGLIEGCIQRIDRTGL 98
+R I ++ + + D H K VLRL ND + LFNG G I I + L
Sbjct: 4 NRIYINSRLAENSKIELASDHHVHYVKTVLRLKVNDGLRLFNGTDGEFLAQINDIGKNNL 63
Query: 99 DVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRK 158
V E LK +T+ + A +K + + T+LG + PL+T Q R
Sbjct: 64 SVRLKEQLK---KPYTKSTLTLAVAIIKQDKLMLAINMATQLGITKIIPLITRW-CQFRS 119
Query: 159 IGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLAFVAIAEAT 218
+ C +RL ++ + I L + L +
Sbjct: 120 VNIERLTKCVI--------EATEQSERLTPPIIEKAITIQDYLKKNNNLMLYANEHEKEE 171
Query: 219 PLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGAT-AVGLGPHRLR 267
+ +SSS + S IIVGPEG FT E+ + T ++ LG + LR
Sbjct: 172 NSILRISSSLSNSDITIIVGPEGGFTNDELELLASYKNTKSISLGSNILR 221
>sp|P72667|RSME_SYNY3 Ribosomal RNA small subunit methyltransferase E OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=rsmE PE=3 SV=1
Length = 303
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 115/281 (40%), Gaps = 27/281 (9%)
Query: 12 FVQFLNRP-----SLKP--LSLRAFSSSSSDYANQSRGGIPRFFSQGGIVRVEGDEFWHM 64
VQF+ P +L P LSL SSS + R + V + + ++
Sbjct: 31 IVQFVLSPILVSTNLTPSILSLPVQEKSSSSFVMAYRLVVAPEQIIEATVTLTTAQLHYL 90
Query: 65 TKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTG---LDVVALEDLKLVLPQHTQWNVFAA 121
+VLRL D + +G GG+ + + L+ V+ E +L LP V A
Sbjct: 91 QRVLRLQKGDGFMVLDGGGGVWRAQLNDLAHGTAQLLETVS-EQNELPLP------VTLA 143
Query: 122 FGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVY 181
KG + ++ CTELGA + PLLTE L K N + + +A
Sbjct: 144 IALPKGSGFEEIIRPCTELGATAFQPLLTERTL--LKPSQNKL---ERWQRIVTEAAEQS 198
Query: 182 GGQRLHEMVLNPPMKIDGLLPLVS-QSKLAFVAIAEA-TPLVTALSSSRNESSGLII-VG 238
Q L + P+ + V+ LA + + +P++ A N + +++ G
Sbjct: 199 ERQWLPPVAA--PLTFGQFVEKVAGPETLALLCVTRLNSPMLGAYLKQSNLPAQIVLATG 256
Query: 239 PEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279
PEG +T+ E++ + G V LG LR TA LA +
Sbjct: 257 PEGGWTDNEISLAIAKGFQPVSLGKRILRAVTAPTVALAQI 297
>sp|P37995|RSME_DICD3 Ribosomal RNA small subunit methyltransferase E OS=Dickeya dadantii
(strain 3937) GN=rsmE PE=3 SV=2
Length = 244
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 97/247 (39%), Gaps = 20/247 (8%)
Query: 44 IPRFFS------QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTG 97
IPR F QGG + D H+ +VLR+S ++LF+G + + I + +
Sbjct: 3 IPRIFHPDTLTPQGGETDLSEDAANHVGRVLRMSAGQALQLFDGSNQVFDAEIVQAGKKN 62
Query: 98 LDV--VALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQ 155
+ V A + P H + +G + ++ ++K ELG +TPLL+E
Sbjct: 63 VRVRYAAGQTENRESPLHLHLGQVMS----RGEKMEFTIQKSIELGVNVITPLLSE-RCG 117
Query: 156 SRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQS-KLAFVAI 214
+ G+ + + G R+ E + P ++ KL
Sbjct: 118 VKLDGERLEKKIAQWQKIAIAACEQCGRNRVPE--IRPVQTLESWCAEPDNGLKLNLHPR 175
Query: 215 AEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274
A + L SR +++GPEG + E+ G T + LGP LR ET +
Sbjct: 176 AAHSINTLPLPVSRIR----LLIGPEGGLSADEIAMTATQGFTDILLGPRVLRTETTALT 231
Query: 275 LLATLML 281
+ L +
Sbjct: 232 AITALQV 238
>sp|Q9ZDZ5|RSME_RICPR Ribosomal RNA small subunit methyltransferase E OS=Rickettsia
prowazekii (strain Madrid E) GN=rsmE PE=3 SV=1
Length = 198
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 4/128 (3%)
Query: 40 SRGGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLD 99
+R I ++ + + D ++ VLRL +D + +FNG G I +I + L
Sbjct: 4 NRIYINSNLAENSKLELARDYVHYVKTVLRLKIHDSLRIFNGSDGEFLAQITQIGKNNLS 63
Query: 100 VVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI 159
VV E LK + + + A +K + + T+LG + PL+T Q R +
Sbjct: 64 VVLKEQLK---KAYIESALTLAVAIIKSDKLMLTINMATQLGITKIIPLITR-RCQFRTV 119
Query: 160 GDNGFLSC 167
+ C
Sbjct: 120 NIERLMKC 127
>sp|O50188|RSME_MYCH2 Ribosomal RNA small subunit methyltransferase E OS=Mycoplasma
hyopneumoniae (strain 232) GN=rsmE PE=3 SV=1
Length = 227
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 11/165 (6%)
Query: 118 VFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANS 177
V A LK ++ ++K E+G + P ++ S+K+ + + +S
Sbjct: 70 VVLALAILKTKSFEFAIQKAVEIGVNEIWPFYSKN--VSQKLSGDLEKKLKRWEQICLHS 127
Query: 178 AFVYGGQRLHEMV--LNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLI 235
A Q ++ +N P+ LL + ++ A ++ N + +I
Sbjct: 128 A----QQSFRNLIPKINLPINYKDLLEQAKNFPVKLISFERAK---NNINIPDNPQNTII 180
Query: 236 IVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280
I+GPEG F + E+ + + G ++ LG LR ETA I LL +
Sbjct: 181 IIGPEGGFDDVEIQQAEKLGFQSITLGKRILRSETAAIFLLTKCI 225
>sp|P0AGL9|RSME_SHIFL Ribosomal RNA small subunit methyltransferase E OS=Shigella
flexneri GN=rsmE PE=3 SV=1
Length = 243
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 104/249 (41%), Gaps = 25/249 (10%)
Query: 44 IPRFF------SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTG 97
IPR + S I E D H+ +VLR+ ++LF+G + + I +
Sbjct: 3 IPRIYHPEPLTSHSHIALCE-DAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61
Query: 98 LDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHL 154
++V LE + + + ++ +G + ++ ++K ELG +TPL +E + L
Sbjct: 62 VEVKVLEG--QIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKL 119
Query: 155 QSRKIGDNGFLSCNFYYGFIANSAFVYGGQ-RLHEMVLNPPMKIDGLLPLVSQS-KLAFV 212
S ++ N L + IA +A G+ R+ E + P M ++ + KL
Sbjct: 120 DSERL--NKKLQ---QWQKIAIAACEQCGRNRVPE--IRPAMDLEAWCAEQDEGLKLNLH 172
Query: 213 AIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
A + L R +++GPEG + E+ T + LGP LR ET
Sbjct: 173 PRASNSINTLPLPVERVR----LLIGPEGGLSADEIAMTARYQFTDILLGPRVLRTETTA 228
Query: 273 IALLATLML 281
+ + L +
Sbjct: 229 LTAITALQV 237
>sp|P0AGL7|RSME_ECOLI Ribosomal RNA small subunit methyltransferase E OS=Escherichia coli
(strain K12) GN=rsmE PE=1 SV=1
Length = 243
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 104/249 (41%), Gaps = 25/249 (10%)
Query: 44 IPRFF------SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTG 97
IPR + S I E D H+ +VLR+ ++LF+G + + I +
Sbjct: 3 IPRIYHPEPLTSHSHIALCE-DAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61
Query: 98 LDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHL 154
++V LE + + + ++ +G + ++ ++K ELG +TPL +E + L
Sbjct: 62 VEVKVLEG--QIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKL 119
Query: 155 QSRKIGDNGFLSCNFYYGFIANSAFVYGGQ-RLHEMVLNPPMKIDGLLPLVSQS-KLAFV 212
S ++ N L + IA +A G+ R+ E + P M ++ + KL
Sbjct: 120 DSERL--NKKLQ---QWQKIAIAACEQCGRNRVPE--IRPAMDLEAWCAEQDEGLKLNLH 172
Query: 213 AIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
A + L R +++GPEG + E+ T + LGP LR ET
Sbjct: 173 PRASNSINTLPLPVERVR----LLIGPEGGLSADEIAMTARYQFTDILLGPRVLRTETTA 228
Query: 273 IALLATLML 281
+ + L +
Sbjct: 229 LTAITALQV 237
>sp|P0AGL8|RSME_ECOL6 Ribosomal RNA small subunit methyltransferase E OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rsmE PE=3
SV=1
Length = 243
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 104/249 (41%), Gaps = 25/249 (10%)
Query: 44 IPRFF------SQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTG 97
IPR + S I E D H+ +VLR+ ++LF+G + + I +
Sbjct: 3 IPRIYHPEPLTSHSHIALCE-DAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61
Query: 98 LDVVALEDLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE---LHL 154
++V LE + + + ++ +G + ++ ++K ELG +TPL +E + L
Sbjct: 62 VEVKVLEG--QIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKL 119
Query: 155 QSRKIGDNGFLSCNFYYGFIANSAFVYGGQ-RLHEMVLNPPMKIDGLLPLVSQS-KLAFV 212
S ++ N L + IA +A G+ R+ E + P M ++ + KL
Sbjct: 120 DSERL--NKKLQ---QWQKIAIAACEQCGRNRVPE--IRPAMDLEAWCAEQDEGLKLNLH 172
Query: 213 AIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272
A + L R +++GPEG + E+ T + LGP LR ET
Sbjct: 173 PRASNSINTLPLPVERVR----LLIGPEGGLSADEIAMTARYQFTDILLGPRVLRTETTA 228
Query: 273 IALLATLML 281
+ + L +
Sbjct: 229 LTAITALQV 237
>sp|O51089|RSME1_BORBU Ribosomal RNA small subunit methyltransferase E 1 OS=Borrelia
burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM
4680) GN=rsmE1 PE=3 SV=1
Length = 238
Score = 39.7 bits (91), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 231 SSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274
++ +IIVGPE FTEKE I + + + + LR ETATIA
Sbjct: 183 NNAVIIVGPERGFTEKEKQLIAQYNFSPYSISTNTLRTETATIA 226
>sp|O51333|RSME2_BORBU Ribosomal RNA small subunit methyltransferase E 2 OS=Borrelia
burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM
4680) GN=rsmE2 PE=3 SV=1
Length = 243
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 86/225 (38%), Gaps = 24/225 (10%)
Query: 61 FWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFA 120
+ H+ V RL D++ + L I +I G + + K+ + + +
Sbjct: 24 YHHLVNVRRLKKGDKLNILLKDKELRASEIVKI---GSNFIKFTTNKIDKIEKNNFEISI 80
Query: 121 AFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFV 180
+LKG + D ++ + E+G + + + + KI N + + I + A
Sbjct: 81 FISSLKGRKIDLVLRQVVEIGVSEINIINADRSVS--KIDINNASAKILRFSKIIDEALK 138
Query: 181 YGGQRLHEMVLNPPMKIDG---LLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGL--- 234
G ++ P + LP + +VA L S+NES
Sbjct: 139 QSGNKIV-----PKINFYNNFFYLPYSFCTTRYYVAHPSGMIL------SKNESFDNFGK 187
Query: 235 --IIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLA 277
II+GPEG F+E E+ E G V LR +TA I LA
Sbjct: 188 IGIIIGPEGCFSESEIVFFKEKGFNFVRFNTPILRADTAIIYSLA 232
>sp|E2QTD3|TDRD5_CANFA Tudor domain-containing protein 5 OS=Canis familiaris GN=TDRD5 PE=3
SV=1
Length = 985
Score = 35.8 bits (81), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 21/99 (21%)
Query: 12 FVQFLNRPSLKPLSLRAFSSSSSD------------YANQ---SRGGIPRFFSQGG---I 53
FV+++ PS +R +S SS+ Y+NQ R +P +F Q G
Sbjct: 481 FVEYIISPSQ--FYIRIYSRDSSELLEDMMIEMRRCYSNQLVSDRYAMPEYFIQPGHLCC 538
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQR 92
VR+ D++W+ + R+ VE+F G I G +Q+
Sbjct: 539 VRISEDKWWYRVIIHRVLGKQEVEVFYPDFGNI-GTVQK 576
>sp|D2H3M0|TDRD5_AILME Tudor domain-containing protein 5 OS=Ailuropoda melanoleuca
GN=TDRD5 PE=3 SV=1
Length = 982
Score = 35.4 bits (80), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 21/99 (21%)
Query: 12 FVQFLNRPSLKPLSLRAFSSSSSD------------YANQ---SRGGIPRFFSQGG---I 53
FV+++ PS +R +S SS+ Y+NQ R +P +F Q G
Sbjct: 478 FVEYIISPSQ--FYIRIYSRDSSELLEDMMIEMRRCYSNQLVSDRYTLPEYFIQPGHLCC 535
Query: 54 VRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQR 92
VR+ D++W+ + R+ VE+F G I G +Q+
Sbjct: 536 VRISEDKWWYRVIIHRVLGKQEVEVFYPDFGNI-GTVQK 573
>sp|A8MLI9|PUR9_ALKOO Bifunctional purine biosynthesis protein PurH OS=Alkaliphilus
oremlandii (strain OhILAs) GN=purH PE=3 SV=1
Length = 512
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 7/132 (5%)
Query: 105 DLKLVLPQHTQWNVFAAFGTLKGGRADWLVEKCTE--LGAQSVTPLLTELHLQSRKIGDN 162
D KL VF AD+L ++ +E +GA ++T LT +Q + G+N
Sbjct: 162 DTKLDTRYQLALKVFQHTAQYDALIADYLGKQISEEKIGANTIT--LTYEKVQDLRYGEN 219
Query: 163 GFLSCNFYYGFIANSAFVYGGQRLH--EMVLNPPMKIDGLLPLVSQ-SKLAFVAIAEATP 219
FY AN + G +LH E+ N +G L L+ + + VA+ P
Sbjct: 220 PHQKAGFYKEIGANKGTLVDGVQLHGKELSFNNINDANGALELLKEFQEPTVVAVKHTNP 279
Query: 220 LVTALSSSRNES 231
A ++ E+
Sbjct: 280 CGVASGTNIEEA 291
>sp|A1TTD3|OBG_ACIAC GTPase obg OS=Acidovorax citrulli (strain AAC00-1) GN=obg PE=3 SV=1
Length = 357
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 199 GLLPLVSQSKLAFVA-IAEATPLVTALS-SSRNESSGLIIVGPEGDFTEKEVNKIVEAGA 256
GLL + + K F+A ++ A P + ++ + + G++ VGPE F ++ ++E +
Sbjct: 163 GLLGMPNAGKSTFIAAVSNARPKIADYPFTTLHPNLGVVRVGPEQSFVVADIPGLIEGAS 222
Query: 257 TAVGLGPHRLRVETATIALLATLMLC 282
GLG LR T LL + L
Sbjct: 223 EGAGLGHQFLRHLQRTRLLLHVVDLA 248
>sp|B9MDZ7|OBG_ACIET GTPase obg OS=Acidovorax ebreus (strain TPSY) GN=obg PE=3 SV=1
Length = 357
Score = 32.3 bits (72), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 199 GLLPLVSQSKLAFVA-IAEATPLVTALS-SSRNESSGLIIVGPEGDFTEKEVNKIVEAGA 256
GLL + + K F+A ++ A P + ++ + + G++ VGPE F ++ ++E +
Sbjct: 163 GLLGMPNAGKSTFIAAVSNARPKIADYPFTTLHPNLGVVRVGPEQSFVVADIPGLIEGAS 222
Query: 257 TAVGLGPHRLRVETATIALLATLMLC 282
GLG LR T LL + L
Sbjct: 223 EGAGLGHQFLRHLQRTRLLLHVVDLA 248
>sp|A2SD36|OBG_METPP GTPase obg OS=Methylibium petroleiphilum (strain PM1) GN=obg PE=3
SV=1
Length = 370
Score = 32.0 bits (71), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 199 GLLPLVSQSKLAFV-AIAEATPLVTALS-SSRNESSGLIIVGPEGDFTEKEVNKIVEAGA 256
GLL + + K + AI+ A P + ++ + + G++ VGPE F +V ++E A
Sbjct: 163 GLLGMPNAGKSTLISAISNARPKIADYPFTTLHPNLGVVRVGPEQSFVVADVPGLIEGAA 222
Query: 257 TAVGLGPHRLRVETATIALLATLMLCSDSQQMPI 290
GLG LR T LL + + P+
Sbjct: 223 EGAGLGHRFLRHLQRTRLLLHMIDMAPFDDTDPV 256
>sp|Q5I597|BHMT1_BOVIN Betaine--homocysteine S-methyltransferase 1 OS=Bos taurus GN=BHMT
PE=2 SV=1
Length = 407
Score = 31.6 bits (70), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 211 FVAIAEATPLVTALSSSRNESSGLIIVGPEGDF---TEKEVN-KIVEAGATAVGLGPH 264
F + EA V AL +S + + +GPEGD T E ++V+AGA+ VG+ H
Sbjct: 161 FEHVEEAVWAVEALKASGKPVAATMCIGPEGDLHSVTPGECAVRLVKAGASIVGVNCH 218
>sp|A1W4B0|OBG_ACISJ GTPase obg OS=Acidovorax sp. (strain JS42) GN=obg PE=3 SV=2
Length = 357
Score = 31.2 bits (69), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 199 GLLPLVSQSKLAFVA-IAEATPLVTALS-SSRNESSGLIIVGPEGDFTEKEVNKIVEAGA 256
GLL + + K F+A ++ A P + ++ + + G++ VGPE F ++ ++E +
Sbjct: 163 GLLGMPNAGKSTFIAAVSNARPKIADYPFTTLHPNLGVVRVGPEQSFVVADIPGLIEGAS 222
Query: 257 TAVGLGPHRLRVETATIALLATLMLC 282
GLG LR T LL + +
Sbjct: 223 EGAGLGHQFLRHLQRTRLLLHVVDMA 248
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,699,643
Number of Sequences: 539616
Number of extensions: 4250822
Number of successful extensions: 10843
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 10805
Number of HSP's gapped (non-prelim): 43
length of query: 291
length of database: 191,569,459
effective HSP length: 116
effective length of query: 175
effective length of database: 128,974,003
effective search space: 22570450525
effective search space used: 22570450525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)