Query 045537
Match_columns 291
No_of_seqs 176 out of 1170
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 04:48:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045537.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045537hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e8b_A Ribosomal RNA small sub 100.0 1.5E-65 5.3E-70 468.6 24.3 231 42-285 1-242 (251)
2 1vhk_A Hypothetical protein YQ 100.0 4.2E-63 1.4E-67 456.5 24.7 234 42-285 1-254 (268)
3 1vhy_A Hypothetical protein HI 100.0 3.1E-63 1.1E-67 454.8 23.3 232 42-285 3-245 (257)
4 1v6z_A Hypothetical protein TT 100.0 3.3E-63 1.1E-67 447.4 20.2 223 42-282 1-225 (228)
5 3kw2_A Probable R-RNA methyltr 100.0 1.2E-62 4.1E-67 450.9 19.0 228 41-281 2-241 (257)
6 2egv_A UPF0088 protein AQ_165; 100.0 2.6E-61 8.8E-66 435.3 20.4 219 44-281 1-228 (229)
7 1z85_A Hypothetical protein TM 100.0 7.2E-58 2.5E-62 414.0 17.3 218 43-284 12-233 (234)
8 2qmm_A UPF0217 protein AF_1056 96.7 0.0015 5.1E-08 57.1 5.2 77 195-275 112-188 (197)
9 3aia_A UPF0217 protein MJ1640; 96.4 0.0031 1.1E-07 55.6 5.2 77 195-276 123-200 (211)
10 2qwv_A UPF0217 protein VC_A105 94.8 0.012 4.1E-07 51.6 2.3 79 195-277 121-199 (208)
11 1v2x_A TRNA (GM18) methyltrans 90.3 0.83 2.8E-05 39.0 7.6 110 116-251 23-136 (194)
12 2ha8_A TAR (HIV-1) RNA loop bi 89.0 0.85 2.9E-05 38.6 6.6 106 123-251 33-143 (184)
13 1zjr_A TRNA (guanosine-2'-O-)- 88.5 1.3 4.3E-05 38.5 7.5 106 122-251 31-140 (211)
14 1ipa_A RRMH, RNA 2'-O-ribose m 87.3 2 6.7E-05 38.8 8.3 107 121-251 121-229 (274)
15 3nk6_A 23S rRNA methyltransfer 86.2 2.1 7.1E-05 38.7 7.8 110 120-251 123-235 (277)
16 3kty_A Probable methyltransfer 83.8 3.1 0.00011 34.6 7.3 115 116-251 11-140 (173)
17 1gz0_A Hypothetical tRNA/RRNA 82.5 2.7 9.2E-05 37.4 6.8 108 122-251 111-220 (253)
18 2eqj_A Metal-response element- 81.8 3.3 0.00011 29.6 5.6 28 69-96 13-40 (66)
19 4hcz_A PHD finger protein 1; p 81.6 2.6 8.9E-05 29.4 4.8 29 69-97 3-31 (58)
20 1x7o_A Avirb, rRNA methyltrans 80.6 3 0.0001 37.9 6.4 109 121-251 131-246 (287)
21 1k3r_A Conserved protein MT000 80.0 1.9 6.5E-05 39.1 4.8 45 230-282 210-260 (268)
22 2e6z_A Transcription elongatio 77.3 1.6 5.4E-05 30.3 2.7 35 68-102 6-40 (59)
23 2i6d_A RNA methyltransferase, 76.2 2.8 9.7E-05 37.3 4.8 110 121-251 108-220 (257)
24 3l8u_A SMU.1707C, putative rRN 76.2 17 0.00059 30.5 9.5 110 115-249 17-129 (182)
25 2xk0_A Polycomb protein PCL; t 75.7 6.5 0.00022 28.3 5.6 37 68-104 14-50 (69)
26 3e5y_A TRMH family RNA methylt 74.3 3.9 0.00013 33.6 4.9 111 116-250 6-119 (160)
27 3onp_A TRNA/RRNA methyltransfe 67.8 7.3 0.00025 34.6 5.5 114 116-251 5-130 (249)
28 4a4f_A SurviVal of motor neuro 65.9 15 0.00051 25.5 5.7 35 68-102 7-44 (64)
29 2equ_A PHD finger protein 20-l 64.4 14 0.00047 26.8 5.4 35 68-102 8-43 (74)
30 3n4j_A RNA methyltransferase; 64.2 11 0.00038 31.1 5.6 111 116-250 5-121 (165)
31 1nz9_A Transcription antitermi 63.4 5.4 0.00019 27.1 2.9 30 68-97 3-32 (58)
32 3p8d_A Medulloblastoma antigen 62.5 11 0.00038 26.9 4.5 28 69-96 6-33 (67)
33 2e5p_A Protein PHF1, PHD finge 62.2 20 0.00067 25.7 5.7 28 69-96 9-36 (68)
34 3sd4_A PHD finger protein 20; 60.8 17 0.00059 25.6 5.3 26 69-94 12-37 (69)
35 3h8z_A FragIle X mental retard 60.4 14 0.00048 29.7 5.3 33 72-104 4-36 (128)
36 3ic6_A Putative methylase fami 58.3 17 0.00059 31.7 6.0 35 116-151 18-52 (223)
37 2zjr_R 50S ribosomal protein L 57.9 5.2 0.00018 31.6 2.3 40 61-100 7-46 (115)
38 3qii_A PHD finger protein 20; 57.3 15 0.0005 27.6 4.5 31 67-97 19-49 (85)
39 3s6w_A Tudor domain-containing 57.3 19 0.00064 23.9 4.8 32 70-101 2-36 (54)
40 3p8b_B Transcription antitermi 57.1 9.2 0.00031 31.0 3.8 46 55-100 73-122 (152)
41 1mhn_A SurviVal motor neuron p 56.1 30 0.001 23.4 5.8 34 69-102 3-39 (59)
42 1g5v_A SurviVal motor neuron p 55.3 24 0.00082 26.3 5.5 34 69-102 10-46 (88)
43 2m0o_A PHD finger protein 1; t 53.7 13 0.00045 27.3 3.6 29 68-96 25-53 (79)
44 2e5q_A PHD finger protein 19; 53.6 20 0.00067 25.3 4.4 28 69-96 7-34 (63)
45 2jvv_A Transcription antitermi 49.8 14 0.00048 30.7 3.8 50 52-101 99-161 (181)
46 2eqm_A PHD finger protein 20-l 49.0 32 0.0011 25.6 5.3 28 69-96 19-46 (88)
47 1vq8_T 50S ribosomal protein L 48.4 12 0.00042 29.7 3.1 47 54-100 26-73 (120)
48 3pnw_C Tudor domain-containing 47.2 37 0.0013 24.5 5.3 34 68-101 16-52 (77)
49 2qqr_A JMJC domain-containing 43.1 30 0.001 27.4 4.5 27 70-96 6-32 (118)
50 2kr7_A FKBP-type peptidyl-prol 42.8 77 0.0026 25.4 7.2 40 67-106 91-130 (151)
51 2d9t_A Tudor domain-containing 42.2 53 0.0018 23.6 5.5 34 69-102 9-45 (78)
52 2do3_A Transcription elongatio 41.0 24 0.00083 25.3 3.4 31 70-100 18-48 (69)
53 1wgs_A MYST histone acetyltran 39.9 32 0.0011 27.6 4.4 26 69-94 12-37 (133)
54 4a17_S RPL26, 60S ribosomal pr 39.0 29 0.00098 28.2 3.9 46 53-100 31-79 (135)
55 4he6_A Peptidase family U32; u 37.1 19 0.00065 26.4 2.4 26 69-94 29-54 (89)
56 4dt4_A FKBP-type 16 kDa peptid 36.3 57 0.002 27.1 5.5 39 67-105 110-148 (169)
57 3t7k_A RTT107, regulator of TY 36.0 22 0.00077 31.8 3.0 39 232-270 23-73 (256)
58 3j21_U 50S ribosomal protein L 34.8 28 0.00097 27.6 3.2 47 54-100 29-76 (121)
59 3fdr_A Tudor and KH domain-con 34.7 72 0.0025 23.2 5.4 35 68-102 26-62 (94)
60 3cgm_A SLYD, peptidyl-prolyl C 34.7 62 0.0021 26.4 5.4 40 66-105 81-120 (158)
61 3tsm_A IGPS, indole-3-glycerol 34.3 12 0.0004 33.8 0.9 121 131-272 132-259 (272)
62 3u5e_Y L33, YL33, 60S ribosoma 33.5 28 0.00096 27.9 3.0 46 53-100 32-80 (127)
63 4drs_A Pyruvate kinase; glycol 33.2 14 0.00047 36.6 1.3 72 70-146 160-234 (526)
64 2lcc_A AT-rich interactive dom 32.7 31 0.0011 24.9 2.9 26 69-94 5-33 (76)
65 2zkr_t 60S ribosomal protein L 32.7 28 0.00097 28.5 2.9 36 65-100 44-80 (145)
66 3inp_A D-ribulose-phosphate 3- 31.4 45 0.0015 29.4 4.3 132 114-270 87-231 (246)
67 3v2d_Y 50S ribosomal protein L 31.3 33 0.0011 26.8 3.0 34 67-100 4-37 (110)
68 2f5k_A MORF-related gene 15 is 31.1 57 0.002 25.0 4.3 25 69-94 22-46 (102)
69 3igs_A N-acetylmannosamine-6-p 30.9 24 0.00081 30.6 2.3 37 239-275 186-223 (232)
70 1at0_A 17-hedgehog; developmen 30.4 61 0.0021 25.8 4.6 33 63-95 85-118 (145)
71 3ilk_A Uncharacterized tRNA/RR 30.3 29 0.00099 30.6 2.8 109 116-251 8-128 (244)
72 3qja_A IGPS, indole-3-glycerol 29.7 18 0.0006 32.4 1.3 32 240-271 219-251 (272)
73 1y96_A Gemin6, SIP2, GEM-assoc 28.9 90 0.0031 23.2 4.9 33 72-104 16-48 (86)
74 3q58_A N-acetylmannosamine-6-p 28.4 27 0.00093 30.2 2.3 33 239-271 186-219 (229)
75 2ro0_A Histone acetyltransfera 28.3 76 0.0026 23.8 4.5 27 68-95 22-48 (92)
76 2pn0_A Prokaryotic transcripti 28.0 66 0.0022 25.7 4.4 28 67-94 101-128 (141)
77 2dig_A Lamin-B receptor; tudor 27.4 52 0.0018 23.4 3.1 30 68-97 11-41 (68)
78 3m9p_A MALE-specific lethal 3 27.1 81 0.0028 24.6 4.6 27 68-94 18-48 (110)
79 2rnz_A Histone acetyltransfera 26.6 71 0.0024 24.1 4.0 27 68-95 24-50 (94)
80 2v82_A 2-dehydro-3-deoxy-6-pho 26.1 21 0.00073 29.8 1.1 31 238-268 152-182 (212)
81 3bmb_A Regulator of nucleoside 26.1 72 0.0025 25.2 4.3 29 66-94 97-125 (136)
82 3iz5_Y 60S ribosomal protein L 26.1 35 0.0012 28.1 2.4 46 53-100 31-79 (150)
83 3cu2_A Ribulose-5-phosphate 3- 25.9 96 0.0033 27.0 5.4 35 235-269 188-224 (237)
84 3dcm_X AdoMet, uncharacterized 25.5 39 0.0013 28.8 2.7 111 130-251 31-154 (192)
85 3m9q_A Protein MALE-specific l 25.4 94 0.0032 23.8 4.6 25 70-94 20-48 (101)
86 2k8i_A SLYD, peptidyl-prolyl C 25.2 82 0.0028 26.0 4.6 38 67-105 87-124 (171)
87 2ln7_A LPXTG-SITE transpeptida 25.0 51 0.0018 26.4 3.2 40 53-93 59-98 (147)
88 3o07_A Pyridoxine biosynthesis 24.3 71 0.0024 29.1 4.3 37 239-275 205-242 (291)
89 2iim_A Proto-oncogene tyrosine 24.2 88 0.003 20.5 3.9 24 67-90 22-45 (62)
90 1g6u_A Domain swapped dimer; d 22.9 44 0.0015 21.4 1.9 13 241-253 15-27 (48)
91 3ovp_A Ribulose-phosphate 3-ep 22.4 2.9E+02 0.0098 23.5 7.8 129 114-269 65-204 (228)
92 1y71_A Kinase-associated prote 22.1 1.9E+02 0.0065 23.1 5.9 36 70-106 8-43 (130)
93 2l66_A SSO7C4, transcriptional 22.1 1.3E+02 0.0044 19.6 4.3 29 52-84 12-40 (53)
94 2diq_A Tudor and KH domain-con 21.8 71 0.0024 24.0 3.3 34 69-102 32-67 (110)
95 2ckk_A KIN17; beta barrel, rib 21.7 53 0.0018 26.0 2.6 42 61-103 63-106 (127)
96 2zbt_A Pyridoxal biosynthesis 21.5 61 0.0021 28.6 3.3 33 237-269 212-245 (297)
97 4fak_A Ribosomal RNA large sub 20.9 1.7E+02 0.006 24.0 5.8 76 201-280 68-150 (163)
98 1t2w_A Sortase; transpeptidase 20.7 91 0.0031 24.7 3.9 31 62-93 67-97 (145)
99 3r8s_U 50S ribosomal protein L 20.7 80 0.0027 24.2 3.3 29 68-96 2-30 (102)
100 3h8z_A FragIle X mental retard 20.6 2E+02 0.0067 22.8 5.8 33 69-101 60-97 (128)
101 3g66_A Sortase C; pilus, trans 20.4 87 0.003 26.9 3.9 31 62-93 121-151 (212)
102 3oii_A Essential for mitotic g 20.4 2.1E+02 0.0073 25.4 6.5 78 196-283 167-251 (253)
103 3o63_A Probable thiamine-phosp 20.1 30 0.001 30.3 0.9 35 239-273 196-230 (243)
No 1
>4e8b_A Ribosomal RNA small subunit methyltransferase E; 16S rRNA methyltransferase; 2.25A {Escherichia coli}
Probab=100.00 E-value=1.5e-65 Score=468.61 Aligned_cols=231 Identities=20% Similarity=0.306 Sum_probs=202.6
Q ss_pred ccccEEEe-----CCcEEEEcchhhhHHHHcccCCCCCEEEEEeCCCCEEEEEEEEeeCCceEEEeeecccccCCCCccc
Q 045537 42 GGIPRFFS-----QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQW 116 (291)
Q Consensus 42 ~~~~rff~-----~~~~v~L~~~~~~Hl~kVLRlk~Gd~i~v~dG~g~~~~a~I~~i~k~~~~v~i~~~~~~~~~~~~~i 116 (291)
|+|||||+ .++.+.|+++++||+.||||+++||.|.++||+|+.|.|+|++++++.+.+++.+... .+++.++
T Consensus 1 MrmpRff~~~~l~~~~~i~L~~~~~~Hl~~VLR~~~Gd~v~l~dg~g~~~~a~I~~i~~~~~~~~i~~~~~--~~~e~~~ 78 (251)
T 4e8b_A 1 MRIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKSVEVKVLEGQI--DDRESPL 78 (251)
T ss_dssp --CCEEECSSCCCTTCEEECCHHHHHHHHTTSCCCSCCEEEEECSSSEEEEEEEEEECSSCEEEEEEEEEE--CCCCCSS
T ss_pred CCCCEEEECcccCCCCEEEeCHHHHHHHHHhCcCCCCCEEEEEeCCCcEEEEEEEEeecceEEEEEeeeec--CCCCCCc
Confidence 89999998 4678999999999999999999999999999999999999999999999998876543 2334556
Q ss_pred eEEEEeeccCCCcHHHHHHHHHhcCccEEEEeeccccccccccc-----ccccccccchhhchhchhhhhcCCCCcceeE
Q 045537 117 NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIG-----DNGFLSCNFYYGFIANSAFVYGGQRLHEMVL 191 (291)
Q Consensus 117 ~l~la~~l~K~~r~d~iiekatELGV~~I~P~~se~~~RS~~~~-----~~k~eRw~~~~kIi~~~eA~kQs~r~~lP~I 191 (291)
.+++++|+||++||||+|||||||||++|+|+.|+ ||+++. .+|.+||+ +|+ +||||||+|+++|+|
T Consensus 79 ~v~L~~al~K~~r~e~ilqkatELGv~~I~p~~t~---rsv~~~~~~k~~~k~~Rw~---~I~--~eAaeQs~R~~iP~v 150 (251)
T 4e8b_A 79 HIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSE---RCGVKLDSERLNKKLQQWQ---KIA--IAACEQCGRNRVPEI 150 (251)
T ss_dssp EEEEEEECCSSSHHHHHHHHHHHTTCCEEEEEECT---TCCCCCCHHHHHHHHHHHH---HHH--HHHHHHHTCSSCCCB
T ss_pred eEEEEEEeechhHHHHHHHHHHhhCCCEEEEEEee---eEEeecchhhhhhHHHHHH---HHH--HHHHHhcCCCcCcEE
Confidence 78889999999999999999999999999999999 998642 35778888 999 999999999999999
Q ss_pred cCCCCHhhhccccCCCceEEEEeCCCCChhhhhccCCCCCceEEEEcCCCCCCHHHHHHHHHcCCeEEecCCCccccchH
Q 045537 192 NPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA 271 (291)
Q Consensus 192 ~~p~~l~~~l~~~~~~~~~lv~~~~~~~~~~~l~~~~~~~~i~lvIGPEGGfs~~Ei~~l~~~Gf~~vsLG~rILRtETA 271 (291)
.+|.+|++++.... .+..+++++++......+.. ..++++++||||||||++|++++.++||.+||||+||||||||
T Consensus 151 ~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~i~l~IGPEGGfs~~Ei~~~~~~Gf~~vsLG~rILRtETA 227 (251)
T 4e8b_A 151 RPAMDLEAWCAEQD-EGLKLNLHPRASNSINTLPL--PVERVRLLIGPEGGLSADEIAMTARYQFTDILLGPRVLRTETT 227 (251)
T ss_dssp CCCEEHHHHHHCCC-SSEEEEECTTCSCBGGGSCS--CCCEEEEEECCTTCCCHHHHHHHHHTTCEEEBCCSSCCCHHHH
T ss_pred CCcCCHHHHHhhcC-cCceEeechhhhCchhhccc--cCCcEEEEECCCCCCCHHHHHHHHHCCCEEecCCCCceeHHHH
Confidence 99999999998764 45778888876554443332 3568999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HccCC
Q 045537 272 TIALLATLM-LCSDS 285 (291)
Q Consensus 272 ai~ala~l~-~~~~~ 285 (291)
+++|+|+++ .|||+
T Consensus 228 ~i~als~l~~~~Gdl 242 (251)
T 4e8b_A 228 ALTAITALQVRFGDL 242 (251)
T ss_dssp HHHHHHHHHHHTSST
T ss_pred HHHHHHHHHHHHccC
Confidence 999999996 58887
No 2
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Probab=100.00 E-value=4.2e-63 Score=456.45 Aligned_cols=234 Identities=24% Similarity=0.319 Sum_probs=192.6
Q ss_pred ccccEEEeC--------CcEEEEcchhhhHHHHcccCCCCCEEEEEeCCCCEEEEEEEEeeCCceEEEeeecccccCCCC
Q 045537 42 GGIPRFFSQ--------GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQH 113 (291)
Q Consensus 42 ~~~~rff~~--------~~~v~L~~~~~~Hl~kVLRlk~Gd~i~v~dG~g~~~~a~I~~i~k~~~~v~i~~~~~~~~~~~ 113 (291)
|+|+|||+. ++.+.|+++++||+.+|||+++||.|.|+||+|+.|.|+|++++++.+.+++.+.... +++
T Consensus 1 M~m~r~f~~~~~~~~~~~~~i~L~~~~~~Hl~~VLRl~~Gd~i~l~dg~G~~~~a~I~~~~~~~~~~~i~~~~~~--~~e 78 (268)
T 1vhk_A 1 MSLQRYFIELTKQQIEEAPTFSITGEEVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSKDKVSCLVIEWTNE--NRE 78 (268)
T ss_dssp ---CEEECSSCHHHHHSSSSEEEESHHHHHHHTTTCCCTTCEEEEECTTSCEEEEEEEEECSSEEEEEEEEECCC--CCC
T ss_pred CCCcEEEECccccccCCCCEEEeCHHHHHHHHHhhcCCCCCEEEEEeCCCCEEEEEEEEecCCEEEEEEEEEecc--CCC
Confidence 679999982 5679999999999999999999999999999999999999999999999988775432 234
Q ss_pred ccceEEEEeeccCCCcHHHHHHHHHhcCccEEEEeeccccccccccc-----ccccccccchhhchhchhhhhcCCCCcc
Q 045537 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIG-----DNGFLSCNFYYGFIANSAFVYGGQRLHE 188 (291)
Q Consensus 114 ~~i~l~la~~l~K~~r~d~iiekatELGV~~I~P~~se~~~RS~~~~-----~~k~eRw~~~~kIi~~~eA~kQs~r~~l 188 (291)
.++.|+|++|+||++||||+|||||||||++|+|+.|+ ||+++. .+|.+||+ +|+ +||||||+|+++
T Consensus 79 ~~~~v~L~~al~K~~r~e~ilqkatELGV~~I~p~~s~---Rsv~~~~~~~~~kk~~Rw~---~i~--~eAaeQs~R~~i 150 (268)
T 1vhk_A 79 LPIKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAA---RSVVKLDDKKAKKKRERWT---KIA--KEAAEQSYRNEV 150 (268)
T ss_dssp CSSEEEEEEECCSTTHHHHHHHHHHHTTCCEEEEECCT---TCCCC---------HHHHH---HHH--HHHHHHTTCSSC
T ss_pred CCccEEEEEeeecCccHHHHHHHHHHhCcCEEEEEEee---eeeeecccchhhhHHHHHH---HHH--HHHHHHcCCCCC
Confidence 45678889999999999999999999999999999999 998642 35678888 999 999999999999
Q ss_pred eeEcCCCCHhhhccccCCCceEEEEeCCCCChhhhh------ccCCCCCceEEEEcCCCCCCHHHHHHHHHcCCeEEecC
Q 045537 189 MVLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTAL------SSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLG 262 (291)
Q Consensus 189 P~I~~p~~l~~~l~~~~~~~~~lv~~~~~~~~~~~l------~~~~~~~~i~lvIGPEGGfs~~Ei~~l~~~Gf~~vsLG 262 (291)
|+|.+|.+|+++++...+.+..+++|+++......+ ......++++++||||||||++|++.+.++||.+|+||
T Consensus 151 P~v~~~~~~~~~l~~~~~~~~~lv~~e~~~~~~~~l~~~~~~~~~~~~~~i~l~IGPEGGfs~~Ei~~~~~~G~~~vsLG 230 (268)
T 1vhk_A 151 PRVMDVHSFQQLLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLIVFGPEGGLTEAEVERLTEQDGVTCGLG 230 (268)
T ss_dssp CEECCCBCHHHHHHHGGGSSEEEEECC--------CHHHHHHHTCCTTCEEEEEECCTTCCCHHHHHHHHHTTCEEECCC
T ss_pred cEEecCCCHHHHHhhCccCCeEEEEecCcccccccccccccchhccCCCcEEEEEcCCCCCCHHHHHHHHHCCCEEecCC
Confidence 999999999999986554567888887643211112 11112247999999999999999999999999999999
Q ss_pred CCccccchHHHHHHHHHHH-ccCC
Q 045537 263 PHRLRVETATIALLATLML-CSDS 285 (291)
Q Consensus 263 ~rILRtETAai~ala~l~~-~~~~ 285 (291)
+||||||||+++|+|++++ ++|.
T Consensus 231 ~rILRtETA~i~als~l~~~~~~~ 254 (268)
T 1vhk_A 231 PRILRTETAPLYALSAISYQTELL 254 (268)
T ss_dssp SSCCCTTTHHHHHHHHHHHHHHTC
T ss_pred CCeeehHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999975 4443
No 3
>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research CEN structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A
Probab=100.00 E-value=3.1e-63 Score=454.83 Aligned_cols=232 Identities=22% Similarity=0.306 Sum_probs=193.7
Q ss_pred ccccEEEe-----CCcEEEEcchhhhHHHHcccCCCCCEEEEEeCCCCEEEEEEEEeeCCceEEEeeecccccCCCCccc
Q 045537 42 GGIPRFFS-----QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQW 116 (291)
Q Consensus 42 ~~~~rff~-----~~~~v~L~~~~~~Hl~kVLRlk~Gd~i~v~dG~g~~~~a~I~~i~k~~~~v~i~~~~~~~~~~~~~i 116 (291)
|+|+|||+ .++.+.|+++++||+.||||+++||.|.|+||+|+.|.|+|++++++.+.+++.+.... +++.++
T Consensus 3 M~m~r~f~~~~~~~~~~~~L~~~~~~Hl~~VLRl~~Gd~v~l~dg~g~~~~a~I~~~~~~~~~~~i~~~~~~--~~e~~~ 80 (257)
T 1vhy_A 3 LRIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKSVKVEILGRELA--DKESHL 80 (257)
T ss_dssp --CCEEECSSCCTTCSEEECCHHHHHHHHTTSCCCTTCEEEEECSSSEEEEEEEEEECSSCEEEEECCCEEC--CCCCSS
T ss_pred CcccEEEECcccCCCCEEEeCHHHHHHHHHHhccCCCCEEEEEcCCCCEEEEEEEEeeCCeEEEEEEEEecc--cCCCCc
Confidence 67899998 35689999999999999999999999999999999999999999999999988765432 234456
Q ss_pred eEEEEeeccCCCcHHHHHHHHHhcCccEEEEeeccccccccccc-----ccccccccchhhchhchhhhhcCCCCcceeE
Q 045537 117 NVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIG-----DNGFLSCNFYYGFIANSAFVYGGQRLHEMVL 191 (291)
Q Consensus 117 ~l~la~~l~K~~r~d~iiekatELGV~~I~P~~se~~~RS~~~~-----~~k~eRw~~~~kIi~~~eA~kQs~r~~lP~I 191 (291)
.|+|++|+||++||||+|||||||||++|+|+.|+ ||++++ .+|.+||+ +|+ +||||||+|+++|+|
T Consensus 81 ~l~L~~al~K~~r~e~ilqkatELGv~~I~p~~s~---rs~~~~~~~~~~kk~~Rw~---~i~--~eAaeQs~R~~iP~v 152 (257)
T 1vhy_A 81 KIHLGQVISRGERMEFTIQKSVELGVNVITPLWSE---RCGVKLDAERMDKKIQQWQ---KIA--IAACEQCGRNIVPEI 152 (257)
T ss_dssp CEEEEEEC----CCHHHHHHHHHTTCCEEEEEECT---TSSSCCCHHHHHHHHHHHH---HHH--HHHHHHHCCSSCCEE
T ss_pred eEEEEEecCchHHHHHHHHHHHhhCcCEEEEEEeE---EEEEeccchhhhhHHHHHH---HHH--HHHHHHcCCCcCcEE
Confidence 78889999999999999999999999999999999 998653 35678888 999 999999999999999
Q ss_pred cCCCCHhhhccccCCCceEEEEeCCCCChhhhhccCCCCCceEEEEcCCCCCCHHHHHHHHHcCCeEEecCCCccccchH
Q 045537 192 NPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETA 271 (291)
Q Consensus 192 ~~p~~l~~~l~~~~~~~~~lv~~~~~~~~~~~l~~~~~~~~i~lvIGPEGGfs~~Ei~~l~~~Gf~~vsLG~rILRtETA 271 (291)
.+|.+|+++++... .+..+++|+++......+. ....++++++||||||||++|++.+.++||.+|+||+||||||||
T Consensus 153 ~~~~~~~~~l~~~~-~~~~l~~~~~~~~~l~~~~-~~~~~~i~l~IGPEGGfs~~Ei~~~~~~G~~~vsLG~rILRtETA 230 (257)
T 1vhy_A 153 RPLMKLQDWCAEND-GALKLNLHPRAHYSIKTLP-TIPAGGVRLLIGSEGGLSAQEIAQTEQQGFTEILLGKRVLRTETA 230 (257)
T ss_dssp CCCEEHHHHHTCCS-SCEEEEECTTCCCBGGGCC-CCCTTCEEEEECCTTCCCHHHHHHHHHTTCEEEBCCSSCCCHHHH
T ss_pred eccCCHHHHHhcCC-CCcEEEEcCCCccchhhhh-ccCCCeEEEEEcCCCCCCHHHHHHHHHCCCEEecCCCCeeehHHH
Confidence 99999999997543 3678888876543222221 012347999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-ccCC
Q 045537 272 TIALLATLML-CSDS 285 (291)
Q Consensus 272 ai~ala~l~~-~~~~ 285 (291)
+++|+|++++ ++|.
T Consensus 231 ~i~als~l~~~~~~~ 245 (257)
T 1vhy_A 231 SLAAISALQICFGDL 245 (257)
T ss_dssp HHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHhchh
Confidence 9999999975 4554
No 4
>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A*
Probab=100.00 E-value=3.3e-63 Score=447.38 Aligned_cols=223 Identities=28% Similarity=0.319 Sum_probs=193.5
Q ss_pred ccccEEEeCCcEEEEcchhhhHHHHcccCCCCCEEEEEeCCCCEEEEEEEEeeCCceEEEeeecccccCCCCccceEEEE
Q 045537 42 GGIPRFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAA 121 (291)
Q Consensus 42 ~~~~rff~~~~~v~L~~~~~~Hl~kVLRlk~Gd~i~v~dG~g~~~~a~I~~i~k~~~~v~i~~~~~~~~~~~~~i~l~la 121 (291)
|+|+|||+.++.+.|+++++||+.||||+++||.|.++||+| .|.|+|+++++ .+.+++.+.... +++.++.++|+
T Consensus 1 M~m~r~f~~~~~~~L~~~~~~Hl~~VlRl~~Gd~v~l~dg~g-~~~a~i~~~~~-~~~~~i~~~~~~--~~~~~~~v~L~ 76 (228)
T 1v6z_A 1 MRPHRAFSPGLTGVLPLRETRHLVEVLRARVGDRFTVFDGER-EALAEVVDLGP-PLRYRVLEERRP--EREVGVEVVLY 76 (228)
T ss_dssp -CCCEEECGGGCSBCCHHHHHHHHTTSCCCTTCEEEEECSSC-EEEEEEEECCS-SCEEEEEEEECC--CCSCSSCEEEE
T ss_pred CCccEEEECCCEEEeCHHHHHHHHHhccCCCCCEEEEEeCCc-EEEEEEEECCC-eEEEEEEEEecc--ccCCCccEEEE
Confidence 679999997677999999999999999999999999999999 99999999999 998888765432 23444567788
Q ss_pred eeccCCCcHHHHHHHHHhcCccEEEEeecccccccccc--cccccccccchhhchhchhhhhcCCCCcceeEcCCCCHhh
Q 045537 122 FGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI--GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDG 199 (291)
Q Consensus 122 ~~l~K~~r~d~iiekatELGV~~I~P~~se~~~RS~~~--~~~k~eRw~~~~kIi~~~eA~kQs~r~~lP~I~~p~~l~~ 199 (291)
+|+||++||||+|||||||||++|+|+.|+ ||+++ ..+|.+||+ +|+ +||||||+|+++|+|.+|.+|++
T Consensus 77 ~al~K~~r~e~ilqkatELGv~~I~p~~s~---rs~~~~~~~~k~~Rw~---~i~--~eAaeQs~r~~~P~v~~~~~~~~ 148 (228)
T 1v6z_A 77 VALLKGDKLAEVVRAATELGATRIQPLVTR---HSVPKEMGEGKLRRLR---AVA--LEAAKQSGRVVVPEVLPPIPLKA 148 (228)
T ss_dssp EECCSTTHHHHHHHHHHHTTCSEEEEEECT---TCSCSCCCHHHHHHHH---HHH--HHHHHHTTCSSCCEECCCEEGGG
T ss_pred EEecchHHHHHHHHHHHhhCCCEEEEEEEE---EEEeeccccchHHHHH---HHH--HHHHHHcCCCcCcEEecCCCHHH
Confidence 999999999999999999999999999999 99864 346788999 999 99999999999999999999999
Q ss_pred hccccCCCceEEEEeCCCCChhhhhccCCCCCceEEEEcCCCCCCHHHHHHHHHcCCeEEecCCCccccchHHHHHHHHH
Q 045537 200 LLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279 (291)
Q Consensus 200 ~l~~~~~~~~~lv~~~~~~~~~~~l~~~~~~~~i~lvIGPEGGfs~~Ei~~l~~~Gf~~vsLG~rILRtETAai~ala~l 279 (291)
+++ + +..+++|+++......+.. ..+++.++||||||||++|++.+.++||.+|+||+||||||||+++|+|++
T Consensus 149 ~l~---~-~~~l~~~~~~~~~l~~~~~--~~~~~~l~IGPEGGfs~~Ei~~~~~~G~~~vsLG~rILRtETA~i~ala~~ 222 (228)
T 1v6z_A 149 VPQ---V-AQGLVAHVGATARVREVLD--PEKPLALAVGPEGGFAEEEVALLEARGFTPVSLGRRILRAETAALALLALC 222 (228)
T ss_dssp CCC---C-SSEEEECTTCCCCHHHHCC--TTSCEEEEECCTTCCCHHHHHHHHHHTEEEECCCSSCCCHHHHHHHHHHHH
T ss_pred Hhh---C-CCEEEEeCCCccchhhhcc--CCCcEEEEEcCCCCCCHHHHHHHHHCCCEEecCCCCeeEeHHHHHHHHHHH
Confidence 987 2 5688888765332222211 125799999999999999999999999999999999999999999999999
Q ss_pred HHc
Q 045537 280 MLC 282 (291)
Q Consensus 280 ~~~ 282 (291)
+++
T Consensus 223 ~~~ 225 (228)
T 1v6z_A 223 TAG 225 (228)
T ss_dssp TGG
T ss_pred HHH
Confidence 754
No 5
>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Probab=100.00 E-value=1.2e-62 Score=450.94 Aligned_cols=228 Identities=23% Similarity=0.340 Sum_probs=194.3
Q ss_pred cccccEEEe--CCcEEEEcchhhhHHHHcccCCCCCEEEEEeCCCCEEEEEEEEeeCCceEEEeeecccccCCCCccceE
Q 045537 41 RGGIPRFFS--QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNV 118 (291)
Q Consensus 41 ~~~~~rff~--~~~~v~L~~~~~~Hl~kVLRlk~Gd~i~v~dG~g~~~~a~I~~i~k~~~~v~i~~~~~~~~~~~~~i~l 118 (291)
.|+|++||. .++.+.|+++++||+.||||+++||.|.++||+|+.|.|+|++++++.+.+++.+.... +++.++.|
T Consensus 2 ~~~m~~f~~~~~~~~~~L~~~~~~Hl~~VLRl~~Gd~v~l~dg~g~~~~a~I~~i~~~~~~~~i~~~~~~--~~e~~~~i 79 (257)
T 3kw2_A 2 SLSLPLFYAPDIEQSDRLPDDEAGHILRVLRMQAGDRLRLTDGRGSFFDAVIETADRKSCYVSVCGQESW--QKPWRDRI 79 (257)
T ss_dssp ---CCEEECTTTTTCSBCCHHHHHHHHTTSCCCTTCEEEEECSBSEEEEEEEEEECSSCEEEEEEEEEEC--CCSSCSCE
T ss_pred CccceEEEcCCCCCeEEeCHHHHHHHHHhccCCCCCEEEEEECCCCEEEEEEEEeeCCEEEEEEEEeccc--CCCCCCce
Confidence 489999998 33478899999999999999999999999999999999999999999999988775432 23345567
Q ss_pred EEEeeccC-CCcHHHHHHHHHhcCccEEEEeecccccccccccccccccccchhhchhchhhhhcCCCCcceeEcCCCCH
Q 045537 119 FAAFGTLK-GGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKI 197 (291)
Q Consensus 119 ~la~~l~K-~~r~d~iiekatELGV~~I~P~~se~~~RS~~~~~~k~eRw~~~~kIi~~~eA~kQs~r~~lP~I~~p~~l 197 (291)
+|++|+|| ++||||+|||||||||++|+|+.|+ ||++. .+|.+||+ +|+ +||||||+|+++|+|.+|.+|
T Consensus 80 ~L~~al~K~~dr~d~iiqKatELGV~~I~p~~s~---rs~k~-~~k~eRw~---~I~--~eAaeQs~R~~~P~v~~~~~~ 150 (257)
T 3kw2_A 80 TIAIAPTKQSERMEWMLEKLVEIGVDEVVFIESE---HSERR-RIKAERLE---RIA--ISAMKQSLKASFPVIRVNIPI 150 (257)
T ss_dssp EEEECCCSSHHHHHHHHHHHHHHCCSEEEEEECT---TSCCS-CCCHHHHH---HHH--HHHHHHTTCSBCCEEEEEEEH
T ss_pred EEEEecCCCcchHHHHHHHHHhhCCCEEEEEEee---cchhh-hhhHHHHH---HHH--HHHHHHcCCCcCCEecCcCCH
Confidence 78899999 5999999999999999999999999 98753 57889999 999 999999999999999999999
Q ss_pred hhhccccCCCceEEEEeCCC---------CChhhhhccCCCCCceEEEEcCCCCCCHHHHHHHHHcCCeEEecCCCcccc
Q 045537 198 DGLLPLVSQSKLAFVAIAEA---------TPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRV 268 (291)
Q Consensus 198 ~~~l~~~~~~~~~lv~~~~~---------~~~~~~l~~~~~~~~i~lvIGPEGGfs~~Ei~~l~~~Gf~~vsLG~rILRt 268 (291)
+++++.....+..+++|++. .++...+.. ..++++++||||||||++|++.+.++||.+|+||+|||||
T Consensus 151 ~~~l~~~~~~~~~li~~~~e~~~~~~~~~~~l~~~~~~--~~~~v~l~IGPEGGfs~~Ei~~~~~~Gf~~vsLG~rILRt 228 (257)
T 3kw2_A 151 QTVIADTPKAAVRLIAYVDEAVRAEITQGRGYPSDFYH--VGQDVLILIGPEGDFSPSEVESALLAGFAPVSLGESRLRT 228 (257)
T ss_dssp HHHHHHSCTTSEEEEECCCTTCC-----CCCCGGGTCC--TTSCEEEEECCTTCCCHHHHHHHHHHTCEEECCCSSCCCH
T ss_pred HHHHhhccccCCEEEEEcccccccccccccchhHhhcc--CCCcEEEEECCCCCCCHHHHHHHHHCCCEEEcCCCCcchH
Confidence 99997644456778887432 123333321 2468999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHH
Q 045537 269 ETATIALLATLML 281 (291)
Q Consensus 269 ETAai~ala~l~~ 281 (291)
|||+++|+|++++
T Consensus 229 ETA~i~als~~~~ 241 (257)
T 3kw2_A 229 ETAGLVACQWIHT 241 (257)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999864
No 6
>2egv_A UPF0088 protein AQ_165; RSME, methyltransferase, rRNA modification, PUA domain, M3U, SAM, structural genomics, NPPSFA; HET: SAM; 1.45A {Aquifex aeolicus} PDB: 2egw_A*
Probab=100.00 E-value=2.6e-61 Score=435.31 Aligned_cols=219 Identities=21% Similarity=0.313 Sum_probs=191.2
Q ss_pred ccEEEe---CCcEEEEcchhhhHHHHcccCCCCCEEEEEeCCCCEEEEEEEEeeCCceEEEeeecccccCCCCccce-EE
Q 045537 44 IPRFFS---QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWN-VF 119 (291)
Q Consensus 44 ~~rff~---~~~~v~L~~~~~~Hl~kVLRlk~Gd~i~v~dG~g~~~~a~I~~i~k~~~~v~i~~~~~~~~~~~~~i~-l~ 119 (291)
|+|||+ .++.+.|+++++||+ ||||+++||.|.+ ||+|+.|.|+|++++++.+.+++.+.... ++ +.. ++
T Consensus 1 m~r~f~~~~~~~~~~L~~~~~~Hl-~VlRl~~Gd~v~l-dg~g~~~~a~i~~~~~~~~~~~i~~~~~~---~e-~~~~i~ 74 (229)
T 2egv_A 1 MHVFYSEERRGNLLILREGEVKHF-RVRRIEKDEEFGV-IHEGKIYVCKVRREDKREISCEIVEELET---KL-PPKDIT 74 (229)
T ss_dssp CCEEECSCEETTEEEEETHHHHHH-HHTTCCTTCCEEE-EETTEEEEEEEEEECSSEEEEEEEEECCC---CC-CSSEEE
T ss_pred CcEEEEecCCCCEEEeCHHHHHHH-HhhcCCCCCEEEE-eCCCCEEEEEEEEecCCEEEEEEEEEecC---CC-CCceEE
Confidence 789998 367899999999999 9999999999999 99999999999999999999988775432 33 456 77
Q ss_pred EEeec-cCCCcHHHHHHHHHhcCccEEEEeecccccccccc---cccccccccchhhchhchhhhhcCCCCcceeEcCCC
Q 045537 120 AAFGT-LKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI---GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPM 195 (291)
Q Consensus 120 la~~l-~K~~r~d~iiekatELGV~~I~P~~se~~~RS~~~---~~~k~eRw~~~~kIi~~~eA~kQs~r~~lP~I~~p~ 195 (291)
|++|+ ||++||||+|||||||||++|+|+.|+ ||+++ ..+|.+||+ +|+ +||||||+|+++|+|.+|.
T Consensus 75 L~~al~~K~~r~e~ilqkatELGv~~I~p~~s~---rs~~~~~~~~~k~~Rw~---~i~--~eAaeQs~r~~iP~v~~~~ 146 (229)
T 2egv_A 75 LYQSVTVDLKTMDTIVRQATELGVLTFVPIISE---RSFQKEEAILKKTEKWK---RIV--IEAMKQSRRPIPMEIKKPV 146 (229)
T ss_dssp EEEECCSSTHHHHHHHHHHHHHTCCEEEEEECT---TSCCCHHHHHHHHHHHH---HHH--HHHHHHHTCCSCCEECCCE
T ss_pred EEEecccCHHHHHHHHHHHHHhCcCEEEEEEeE---EeeecccchhhHHHHHH---HHH--HHHHHHcCCCcCcEEcccC
Confidence 88999 999999999999999999999999999 99865 245788999 999 9999999999999999999
Q ss_pred CHhhhccccCCCceEEEEeCCCCChhhhhccCCCCC-ceEEEEcCCCCCCHHHHHHHHHcCCeEEecCCCccccchHHHH
Q 045537 196 KIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNES-SGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274 (291)
Q Consensus 196 ~l~~~l~~~~~~~~~lv~~~~~~~~~~~l~~~~~~~-~i~lvIGPEGGfs~~Ei~~l~~~Gf~~vsLG~rILRtETAai~ 274 (291)
+|+++++... +..+++|+++......+. ..+ ++.++||||||||++|++.+.++||.+|+||+||||||||+++
T Consensus 147 ~~~~~l~~~~--~~~li~~~~~~~~l~~~~---~~~~~i~l~IGPEGGfs~~Ei~~~~~~G~~~vsLG~rILRtETA~i~ 221 (229)
T 2egv_A 147 RLSDLIPESE--ENIILDNFYEGVKPKDVN---LEAKTYSVVVGPEGGFSKRESQILREKGFKSVLLEPYTLRTETAVVS 221 (229)
T ss_dssp EGGGCCCCSS--EEEEECTTSCCBCGGGSC---TTCSEEEEEECCTTCCCHHHHHHHHHTTCEEECCSSSCCCHHHHHHH
T ss_pred CHHHHHhhCC--CCEEEEcCCccchhhhhc---cCCCcEEEEEcCCCCCCHHHHHHHHHCCCEEecCCCCeeEhHHHHHH
Confidence 9999987532 678888876533222221 134 7999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 045537 275 LLATLML 281 (291)
Q Consensus 275 ala~l~~ 281 (291)
|+|++++
T Consensus 222 ala~~~~ 228 (229)
T 2egv_A 222 IVSILMN 228 (229)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9998865
No 7
>1z85_A Hypothetical protein TM1380; alpha/beta knot fold, structural genomics, joint center for structural genomics, JCSG; 2.12A {Thermotoga maritima}
Probab=100.00 E-value=7.2e-58 Score=413.98 Aligned_cols=218 Identities=24% Similarity=0.256 Sum_probs=175.9
Q ss_pred cccEEEe---CCcEEEEcchhhhHHHHcccCCCCCEEEEEeCCCCEEEEEEEEeeCCceEEEeeecccccCCCCccceEE
Q 045537 43 GIPRFFS---QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVF 119 (291)
Q Consensus 43 ~~~rff~---~~~~v~L~~~~~~Hl~kVLRlk~Gd~i~v~dG~g~~~~a~I~~i~k~~~~v~i~~~~~~~~~~~~~i~l~ 119 (291)
-||..+. .++.+.|+++++||+ ||||+++||.|.++||+|+.|.|+|++++++.+.+++.+..... ++.+..++
T Consensus 12 ~~~~~~~~~~~~~~~~L~~~~~~Hl-~VLRl~~Gd~v~l~dg~G~~~~a~I~~~~~~~~~~~i~~~~~~~--~e~~~~i~ 88 (234)
T 1z85_A 12 HMPHLFYGTAQNGEVIFDEREAHHM-RVVRLKEGDVIEATDGNGFSYTCILKSLKKKTAAAKIVKVEEKE--KEPTEKLS 88 (234)
T ss_dssp --CCCEECEEETTEEEECHHHHHHH-HHTTCCTTCEEEEECSBSEEEEEEEEEECSSCEEEEEEEEEECC--CCCSSCEE
T ss_pred cCCCCCCccCCCCEEEeCHHHHHHH-HhhcCCCCCEEEEEeCCCCEEEEEEEEecCCEEEEEEEEEeccC--CCCCceEE
Confidence 3444443 567899999999999 99999999999999999999999999999999999887654322 33445677
Q ss_pred EEeeccCCCcHHHHHHHHHhcCccEEEEeecccccccccccccccccccchhhchhchhhhhcCCCCcceeEcCCCCHhh
Q 045537 120 AAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDG 199 (291)
Q Consensus 120 la~~l~K~~r~d~iiekatELGV~~I~P~~se~~~RS~~~~~~k~eRw~~~~kIi~~~eA~kQs~r~~lP~I~~p~~l~~ 199 (291)
|++|+||++||||+|||||||||++|+|+.|+ ++.+ .+|.+||+ +|+ +||||||+|+++|+|. |.+|++
T Consensus 89 L~~al~K~~r~e~ilqkatELGV~~I~p~~s~-s~~~----~~k~eRw~---~i~--~eAaeQs~R~~~P~v~-~~~~~~ 157 (234)
T 1z85_A 89 VVVPIGRWERTRFLIEKCVELGVDEIFFHKFE-RSQH----EISLDKAK---IVV--REAAKQCKRYLFPKVS-FLEKLE 157 (234)
T ss_dssp EEEECCCHHHHHHHHHHHHHTTCSEEEEECCT-TCCC----CCCHHHHH---HHH--HHHHHHHTCSBCCEEE-ECCSCC
T ss_pred EEEeccchHHHHHHHHHHHHhCCCEEEEEEEE-EEec----hhhHHHHH---HHH--HHHHHHcCCCccceEE-eccHHH
Confidence 88999999999999999999999999999998 5432 56889999 999 9999999999999999 999999
Q ss_pred hccccCCCceEEEEeCCCCChhhhhccCCCCCceEEEEcCCCCCCHHHHHHHHHcCCeEEecCCCccccchHHHHHHHHH
Q 045537 200 LLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATL 279 (291)
Q Consensus 200 ~l~~~~~~~~~lv~~~~~~~~~~~l~~~~~~~~i~lvIGPEGGfs~~Ei~~l~~~Gf~~vsLG~rILRtETAai~ala~l 279 (291)
+++... +. ++ |+++.. ...+ . .+++.++||||||||++|++.+.++ |.+|+||+||||||||+++|+|++
T Consensus 158 ~l~~~~--~~-lv-~e~~~~-l~~~---~-~~~i~l~IGPEGGfs~~Ei~~~~~~-f~~vsLG~rILRtETA~i~ala~l 227 (234)
T 1z85_A 158 FSGNVI--TL-DL-DASQNL-LDAN---L-EGSITVVVGPEGGFSEKERELLRSS-TTIVSLGKKILRFETAAILTVGYI 227 (234)
T ss_dssp CCSEEE--EE-CC----CCC-SSSC---C-CSSEEEEECCTTCCCHHHHHHHHHH-SEEC------CCHHHHHHHHHHHH
T ss_pred HHhhCC--Ce-EE-ECCcch-hhhc---c-CCCEEEEEcCCCCCCHHHHHHHHhh-CeEccCCCCeeEhHHHHHHHHHHH
Confidence 987532 45 66 665433 1111 1 2479999999999999999999999 999999999999999999999999
Q ss_pred HH-ccC
Q 045537 280 ML-CSD 284 (291)
Q Consensus 280 ~~-~~~ 284 (291)
++ ++|
T Consensus 228 ~~~~~~ 233 (234)
T 1z85_A 228 ALKKQK 233 (234)
T ss_dssp HHHTTC
T ss_pred HHHhcC
Confidence 75 454
No 8
>2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7
Probab=96.75 E-value=0.0015 Score=57.09 Aligned_cols=77 Identities=16% Similarity=0.217 Sum_probs=59.7
Q ss_pred CCHhhhccccCCCceEEEEeCCCCChhhhhccCCCCCceEEEEcCCCCCCHHHHHHHHHcCCeEEecCCCccccchHHHH
Q 045537 195 MKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274 (291)
Q Consensus 195 ~~l~~~l~~~~~~~~~lv~~~~~~~~~~~l~~~~~~~~i~lvIGPEGGfs~~Ei~~l~~~Gf~~vsLG~rILRtETAai~ 274 (291)
.+|++++..+......+++|+++.+....- ...+.++++|--|||+++|.+.+.+.+...+|||+..|=|.+++..
T Consensus 112 ~sle~ll~e~~~~~~v~~L~E~G~~i~~~~----~~~~~~fvlGdH~~f~~e~~~~l~~~~~~~iSigp~~L~A~~vi~~ 187 (197)
T 2qmm_A 112 KGLEELIEELSEKYSIIYLKEDGVDISNAQ----LPPNPLFVIGDHEGLTEEQEKVVERYAALKLSLSPLSLLAEQCVVI 187 (197)
T ss_dssp CCHHHHHHHHHHHSEEEEEEEEEEEGGGSC----CCSSEEEEEECTTCCCHHHHHHHHTTCSEEEECCSSCCCHHHHHHH
T ss_pred CCHHHHHHHhhcCCcEEEEcCCCCCCchhh----cCCCCEEEEeCCCCCCHHHHHHHHHhcCeEEEECCchhHHHHHHHH
Confidence 589999887642234678888776543211 1246789999999999999999999999999999999999987655
Q ss_pred H
Q 045537 275 L 275 (291)
Q Consensus 275 a 275 (291)
+
T Consensus 188 v 188 (197)
T 2qmm_A 188 A 188 (197)
T ss_dssp H
T ss_pred H
Confidence 4
No 9
>3aia_A UPF0217 protein MJ1640; DUF358, rRNA methyltransferase, spout-class fold, transferas; HET: SAM; 1.40A {Methanocaldococcus jannaschii} PDB: 3ai9_X*
Probab=96.44 E-value=0.0031 Score=55.63 Aligned_cols=77 Identities=13% Similarity=0.157 Sum_probs=59.3
Q ss_pred CCHhhhccccC-CCceEEEEeCCCCChhhhhccCCCCCceEEEEcCCCCCCHHHHHHHHHcCCeEEecCCCccccchHHH
Q 045537 195 MKIDGLLPLVS-QSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273 (291)
Q Consensus 195 ~~l~~~l~~~~-~~~~~lv~~~~~~~~~~~l~~~~~~~~i~lvIGPEGGfs~~Ei~~l~~~Gf~~vsLG~rILRtETAai 273 (291)
.+|++++.... ++...+++|+++.+.... + . .+.++++|--|||+++|.+.+.+.+...+||||..|=|.+++.
T Consensus 123 ~sle~ll~e~~~~~~~v~~L~E~G~~i~~~--~--~-~~~~fvlGdH~~f~~e~~~~L~~~~~~~iSigp~~L~A~hvi~ 197 (211)
T 3aia_A 123 LGFRNLVLEKLEEGKNIYYLHMNGEDVENV--D--I-ENPVFIIGDHIGIGEEDERFLDEIKAKRISLSPLELHANHCIT 197 (211)
T ss_dssp CCHHHHHHHHHHTTCEEEEEEEEEEEGGGC--C--C-CSEEEEEECSSCSCHHHHHHHHHTTCEEEECCSSCCCHHHHHH
T ss_pred CCHHHHHHHHhhcCCcEEEEcCCCCCCccc--c--c-CCcEEEEECCCCCCHHHHHHHHhhCCeEEEECCcchHHHHHHH
Confidence 58999887764 232367888877654321 1 1 4678999999999999999999999999999999999998765
Q ss_pred HHH
Q 045537 274 ALL 276 (291)
Q Consensus 274 ~al 276 (291)
.+-
T Consensus 198 ~vh 200 (211)
T 3aia_A 198 IIH 200 (211)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 10
>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7
Probab=94.76 E-value=0.012 Score=51.64 Aligned_cols=79 Identities=13% Similarity=0.183 Sum_probs=52.6
Q ss_pred CCHhhhccccCCCceEEEEeCCCCChhhhhccCCCCCceEEEEcCCCCCCHHHHHHHHHcCCeEEecCCCccccchHHHH
Q 045537 195 MKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274 (291)
Q Consensus 195 ~~l~~~l~~~~~~~~~lv~~~~~~~~~~~l~~~~~~~~i~lvIGPEGGfs~~Ei~~l~~~Gf~~vsLG~rILRtETAai~ 274 (291)
.+|++++..+......+++|+++.++.+.. ...+.+++.|=--||+++|.+.+.+.|+..|||||..|=|.-+.++
T Consensus 121 ~~fe~ll~e~~~~~~ly~L~e~G~di~~~~----~~~~~~FvLgDH~g~~~eee~~L~~~~~~~iSlGP~~l~A~hcI~~ 196 (208)
T 2qwv_A 121 ISFEALLGELAEHHSLYMMDKKGDSIRDIK----IGPNPCFILTDHIPMPKKSGNSMKRLGVEKISLGPKMLFASQCVTL 196 (208)
T ss_dssp CCHHHHHHHHHTTSEEEEEEEEEEETTTSC----CCSSEEEEECC----------CTTTTTCEEEECCSSCCCHHHHHHH
T ss_pred CCHHHHHHHHHhcCcEEEEeCCCcCHhhcc----CCCCCEEEEcCCCCCCHHHHHHHHhcCCeEEEeCchHHHHHHHHHH
Confidence 589998887644345778888877654422 1256889999999999999999999999999999999999987765
Q ss_pred HHH
Q 045537 275 LLA 277 (291)
Q Consensus 275 ala 277 (291)
+--
T Consensus 197 vhn 199 (208)
T 2qwv_A 197 IHN 199 (208)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 11
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics INIT RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1
Probab=90.29 E-value=0.83 Score=39.03 Aligned_cols=110 Identities=12% Similarity=0.163 Sum_probs=66.1
Q ss_pred ceEEEEeeccCCCcHHHHHHHHHhcCccEEEEeecccccccccccccccccccchhhchhchhhhhcCCCCcceeEcCCC
Q 045537 116 WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPM 195 (291)
Q Consensus 116 i~l~la~~l~K~~r~d~iiekatELGV~~I~P~~se~~~RS~~~~~~k~eRw~~~~kIi~~~eA~kQs~r~~lP~I~~p~ 195 (291)
+.|+| -.+-.+..+--+++-|.-+|++.++.+... .. +. +.. +.+ .....++| +....
T Consensus 23 ~~vvL-d~~~dp~NlGaI~Rta~a~G~~~v~l~~~~---~~----------~~---~~~--r~s--~Ga~~~l~-~~~~~ 80 (194)
T 1v2x_A 23 LTVLL-ENVHKPHNLSAILRTCDAVGVLEAHAVNPT---GG----------VP---TFN--ETS--GGSHKWVY-LRVHP 80 (194)
T ss_dssp EEEEE-ESCCCHHHHHHHHHHHHHHTBSEEEEESGG---GG----------SC---CCC--SSC--SSGGGTSE-EEEES
T ss_pred EEEEE-eCCCCcChHHHHHHHHHHhCCCEEEEeCCC---CC----------ch---hhH--HHC--CCChheee-eEecC
Confidence 34433 356678889999999999999999866443 11 11 111 111 11113344 43345
Q ss_pred CHhhhccccCCCceEEEEeC-C-C-CChhhhhccCCCCCceEEEEcCCC-CCCHHHHHHH
Q 045537 196 KIDGLLPLVSQSKLAFVAIA-E-A-TPLVTALSSSRNESSGLIIVGPEG-DFTEKEVNKI 251 (291)
Q Consensus 196 ~l~~~l~~~~~~~~~lv~~~-~-~-~~~~~~l~~~~~~~~i~lvIGPEG-Gfs~~Ei~~l 251 (291)
+++++++.+...+..+++-. . + .++. .....+++++++|.|| |+++++++..
T Consensus 81 ~l~~~l~~l~~~g~~i~~~~~~~~~~~~~----~~~~~~~~alv~G~E~~Gls~~~l~~~ 136 (194)
T 1v2x_A 81 DLHEAFRFLKERGFTVYATALREDARDFR----EVDYTKPTAVLFGAEKWGVSEEALALA 136 (194)
T ss_dssp SHHHHHHHHHHTTCEEEEECCCTTSEEGG----GSCTTSSEEEEECBTTTBSCHHHHHHS
T ss_pred CHHHHHHHHHHCCCEEEEEecCCCCccHh----HcccCCCeEEEECCCCCCCCHHHHHhC
Confidence 88888876654344455433 2 1 1222 1223468999999999 9999988763
No 12
>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens}
Probab=89.00 E-value=0.85 Score=38.63 Aligned_cols=106 Identities=11% Similarity=0.114 Sum_probs=62.0
Q ss_pred eccCCCcHHHHHHHHHhcCccEEEEeecccccccccccccccccccchhhchhchhhhhcCCCCcceeEc-CCCCHhhhc
Q 045537 123 GTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLN-PPMKIDGLL 201 (291)
Q Consensus 123 ~l~K~~r~d~iiekatELGV~~I~P~~se~~~RS~~~~~~k~eRw~~~~kIi~~~eA~kQs~r~~lP~I~-~p~~l~~~l 201 (291)
.+-.+..+--|++-|.-+|++.++. +. +... .. .... + + -.....++|... ...++.+++
T Consensus 33 ~i~dp~NlGaI~Rta~a~G~~~vil--~~---~~~~--~~--k~~~---r------~-s~ga~~~l~~~~~~~~~~~~~l 93 (184)
T 2ha8_A 33 LIDKPTNLGGLCRTCEVFGASVLVV--GS---LQCI--SD--KQFQ---H------L-SVSAEQWLPLVEVKPPQLIDYL 93 (184)
T ss_dssp TCCCHHHHHHHHHHHHHTTCSEEEE--SC---GGGG--GS--HHHH---H------H-HTTGGGTSCEEECCGGGHHHHH
T ss_pred CCCCCCcHHHHHHHHHHhCCCEEEE--CC---CCCC--Cc--ccce---e------e-cCCccceEEEEEEcCCCHHHHH
Confidence 4556788999999999999999974 33 1110 00 0111 1 1 112234455443 235788888
Q ss_pred cccCCCceEEEEeC-CC--CChhhhhccCCCCCceEEEEcCCC-CCCHHHHHHH
Q 045537 202 PLVSQSKLAFVAIA-EA--TPLVTALSSSRNESSGLIIVGPEG-DFTEKEVNKI 251 (291)
Q Consensus 202 ~~~~~~~~~lv~~~-~~--~~~~~~l~~~~~~~~i~lvIGPEG-Gfs~~Ei~~l 251 (291)
+.+...+..+++-. .. .++. +....+++++++|.|| |+++++++..
T Consensus 94 ~~lk~~g~~i~~~~~~~~~~~~~----~~~~~~~~alV~G~E~~Gls~~~l~~~ 143 (184)
T 2ha8_A 94 QQKKTEGYTIIGVEQTAKSLDLT----QYCFPEKSLLLLGNEREGIPANLIQQL 143 (184)
T ss_dssp HHHHHTTCEEEEECCCTTCEEGG----GCCCCSSEEEEECBTTTBSCHHHHTTC
T ss_pred HHHHHCCCEEEEEECCCCCcchh----hccCCCCEEEEECCcccCCCHHHHHhC
Confidence 76544444455443 21 2222 1223468999999999 9999987653
No 13
>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus}
Probab=88.54 E-value=1.3 Score=38.47 Aligned_cols=106 Identities=11% Similarity=0.056 Sum_probs=64.5
Q ss_pred eeccCCCcHHHHHHHHHhcCccEEEEeecccccccccccccccccccchhhchhchhhhhcCCCCcceeEcCCCCHhhhc
Q 045537 122 FGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLL 201 (291)
Q Consensus 122 ~~l~K~~r~d~iiekatELGV~~I~P~~se~~~RS~~~~~~k~eRw~~~~kIi~~~eA~kQs~r~~lP~I~~p~~l~~~l 201 (291)
-.+-.+..+--|++-|.-+|++.++.+... ... . +.+ ..++.- ...++|-.. ..++++++
T Consensus 31 d~i~dp~NlGaI~Rta~a~G~~~v~lv~~~---~~~----------~---~~~--~r~s~G-a~~~l~~~~-~~~l~~~l 90 (211)
T 1zjr_A 31 DNVKNEHNFSAIVRTCDAVGVLYLYYYHAE---GKK----------A---KIN--EGITQG-SHKWVFIEK-VDNPVQKL 90 (211)
T ss_dssp ESCCCHHHHHHHHHHHHHHTEEEEEEECSS---TTC----------C---CCC--HHHHTT-GGGSSEEEE-CSCHHHHH
T ss_pred ECCCCcCcHHHHHHHHHHhCCCEEEEeCCC---cCc----------h---HHH--HHHcCC-CcccceeEe-cCCHHHHH
Confidence 355677889999999999999999865433 110 1 111 111111 123455443 56899988
Q ss_pred cccCCCceEEEEeC-C-C-CChhhhhccCCCCCceEEEEcCCC-CCCHHHHHHH
Q 045537 202 PLVSQSKLAFVAIA-E-A-TPLVTALSSSRNESSGLIIVGPEG-DFTEKEVNKI 251 (291)
Q Consensus 202 ~~~~~~~~~lv~~~-~-~-~~~~~~l~~~~~~~~i~lvIGPEG-Gfs~~Ei~~l 251 (291)
+.+...+..+++-. . + .++. +....+++++++|.|| |+++++++..
T Consensus 91 ~~l~~~g~~i~~~~~~~~~~~~~----~~~~~~~~alV~G~E~~GLs~~~l~~~ 140 (211)
T 1zjr_A 91 LEFKNRGFQIVATWLSKESVNFR----EVDYTKPTVLVVGNELQGVSPEIVEIA 140 (211)
T ss_dssp HHHHHTTCEEEEEBCSTTSEEGG----GSCTTSSEEEEEECBTTBSCHHHHTTC
T ss_pred HHHHHCCCEEEEEecCCCCcchh----hcccCCCEEEEECCcccCCCHHHHHhC
Confidence 77654444455433 2 1 1222 1123468999999999 9999987653
No 14
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=87.29 E-value=2 Score=38.79 Aligned_cols=107 Identities=20% Similarity=0.153 Sum_probs=66.1
Q ss_pred EeeccCCCcHHHHHHHHHhcCccEEEEeecccccccccccccccccccchhhchhchhhhhcCCCCcceeEcCCCCHhhh
Q 045537 121 AFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGL 200 (291)
Q Consensus 121 a~~l~K~~r~d~iiekatELGV~~I~P~~se~~~RS~~~~~~k~eRw~~~~kIi~~~eA~kQs~r~~lP~I~~p~~l~~~ 200 (291)
.-.+-.+..+--+++-|.-+|++.++. +. + . +-|. .-+ +.++. ..-.++|-+. .++.++
T Consensus 121 Ld~i~dp~NlGaI~Rta~a~G~~~vil--~~---~-~-------~~~~---~~v--~ras~-Ga~~~l~~~~--~~l~~~ 179 (274)
T 1ipa_A 121 AVGLEKPGNLGAVLRSADAAGAEAVLV--AG---G-V-------DLYS---PQV--IRNST-GVVFSLRTLA--ASESEV 179 (274)
T ss_dssp EESCCCHHHHHHHHHHHHHHTCSEEEE--ES---C-C-------CTTC---HHH--HHHTT-TGGGTSCEEE--ECHHHH
T ss_pred EeCCCCcchHHHHHHHHHhhccCEEEE--eC---C-c-------CcCC---HHH--HHHcC-ChhhcceeEe--CCHHHH
Confidence 346677889999999999999999974 33 2 1 1133 222 22222 2223566554 689888
Q ss_pred ccccCCCceEEEE-eCCCCChhhhhccCCCCCceEEEEcCCC-CCCHHHHHHH
Q 045537 201 LPLVSQSKLAFVA-IAEATPLVTALSSSRNESSGLIIVGPEG-DFTEKEVNKI 251 (291)
Q Consensus 201 l~~~~~~~~~lv~-~~~~~~~~~~l~~~~~~~~i~lvIGPEG-Gfs~~Ei~~l 251 (291)
++.+...+..+++ +..+..... .....+++++++|.|| |++++.++..
T Consensus 180 l~~l~~~g~~i~~~~~~~~~~~~---~~~~~~~~alv~G~E~~Gls~~~~~~~ 229 (274)
T 1ipa_A 180 LDWIKQHNLPLVATTPHAEALYW---EANLRPPVAIAVGPEHEGLRAAWLEAA 229 (274)
T ss_dssp HHHHHHTTCCEEEECTTCSSBGG---GSCCCSSEEEEECCTTSCCCHHHHHHC
T ss_pred HHHHHHcCCEEEEEeCCCCcchh---hcCCCCCEEEEECCCCcCCCHHHHHhC
Confidence 8766543444444 333322121 1123568999999999 9999987764
No 15
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=86.20 E-value=2.1 Score=38.72 Aligned_cols=110 Identities=10% Similarity=0.048 Sum_probs=68.3
Q ss_pred EEeeccCCCcHHHHHHHHHhcCccEEEEeecccccccccccccccccccchhhchhchhhhhcCCCCcceeEcCCCCHhh
Q 045537 120 AAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDG 199 (291)
Q Consensus 120 la~~l~K~~r~d~iiekatELGV~~I~P~~se~~~RS~~~~~~k~eRw~~~~kIi~~~eA~kQs~r~~lP~I~~p~~l~~ 199 (291)
+.-.+-.+..+--|++-|.-+|++.++..... + .+-|. .-+ ..++ ..--.++|.... ++.+
T Consensus 123 vLd~v~dP~NlGaI~Rta~a~G~~~vil~~~~---~--------~~~~~---~~v--~ras-~Ga~~~l~i~~~--~l~~ 183 (277)
T 3nk6_A 123 VLDGVKIVGNIGAIVRTSLALGAAGIVLVDSD---L--------ATIAD---RRL--LRAS-RGYVFSLPVVLA--DREE 183 (277)
T ss_dssp EEESCCCHHHHHHHHHHHHHTTCSEEEEESCC---C--------SCTTC---HHH--HHHT-TTCTTTSCEEEC--CHHH
T ss_pred EEEcCCCcchHHHHHHHHHHcCCCEEEEcCCC---C--------cCCCC---HHH--HHHh-CChhhcCeEEEE--CHHH
Confidence 34467778899999999999999999854412 1 12233 223 2222 223345665544 8999
Q ss_pred hccccCCCceEEEE-eCCCC-ChhhhhccCCCCCceEEEEcCCC-CCCHHHHHHH
Q 045537 200 LLPLVSQSKLAFVA-IAEAT-PLVTALSSSRNESSGLIIVGPEG-DFTEKEVNKI 251 (291)
Q Consensus 200 ~l~~~~~~~~~lv~-~~~~~-~~~~~l~~~~~~~~i~lvIGPEG-Gfs~~Ei~~l 251 (291)
+++.+...+..+++ +.++. ++.+.. ...+++++++|.|| |++++.++..
T Consensus 184 ~l~~lk~~g~~v~~~~~~~~~~~~~~~---~~~~~~alv~GnE~~Gls~~~~~~~ 235 (277)
T 3nk6_A 184 AVSFLRDNDIALMVLDTDGDLGVKDLG---DRADRMALVFGSEKGGPSGLFQEAS 235 (277)
T ss_dssp HHHHHHHTTCCEEEECTTCSEEGGGGG---GCCSCCEEEEEBTTTBSCHHHHHHC
T ss_pred HHHHHHhcCCeEEEEecCCCcchhhhh---ccCCCEEEEECCCCCCCCHHHHHhC
Confidence 88776544443444 33332 332201 23568999999998 9999987764
No 16
>3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.30A {Bordetella pertussis}
Probab=83.79 E-value=3.1 Score=34.59 Aligned_cols=115 Identities=11% Similarity=0.053 Sum_probs=63.3
Q ss_pred ceEEEEeeccCCCcHHHHHHHHHhcCccEEEEeecccccccccccccccccc-cchhhchhchhhhhcCCCCcceeEcCC
Q 045537 116 WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSC-NFYYGFIANSAFVYGGQRLHEMVLNPP 194 (291)
Q Consensus 116 i~l~la~~l~K~~r~d~iiekatELGV~~I~P~~se~~~RS~~~~~~k~eRw-~~~~kIi~~~eA~kQs~r~~lP~I~~p 194 (291)
+.|+| -.+-.+..+--+++-|.-+|++.++.+... +. +-| . .+.+ +.| ...-.++|.+...
T Consensus 11 ~~vvL-~~~~dp~N~Gai~Rta~a~G~~~l~lv~~~----~~-------d~~~~--~~~~--r~a--~Ga~~~l~~~~~~ 72 (173)
T 3kty_A 11 VRFIM-TQPSHPGNVGSAARAIKTMGFGELVLVAPR----FP-------DMTAQ--PEAV--ALA--SGALDVLERAAVH 72 (173)
T ss_dssp EEEEE-ESCCCHHHHHHHHHHHHHTTCCCEEEESCS----ST-------TGGGS--HHHH--HHH--TTCHHHHHTCEEE
T ss_pred eEEEE-eCCCCCCcHHHHHHHHHHcCCCEEEEeCCC----cc-------ccCCC--HHHH--HHc--CCHHHhhchheec
Confidence 34443 355668889999999999999999865432 21 111 1 0222 222 1122345533222
Q ss_pred CCHhhhccccCCCceEEEEeCCCC----Ch------hhhhc---cCCCCCceEEEEcCCC-CCCHHHHHHH
Q 045537 195 MKIDGLLPLVSQSKLAFVAIAEAT----PL------VTALS---SSRNESSGLIIVGPEG-DFTEKEVNKI 251 (291)
Q Consensus 195 ~~l~~~l~~~~~~~~~lv~~~~~~----~~------~~~l~---~~~~~~~i~lvIGPEG-Gfs~~Ei~~l 251 (291)
.+++++++.+. ..+....... +. ...+. +....+++++++|.|| |+++++++..
T Consensus 73 ~~l~~~l~~~~---~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alvfG~E~~GLs~~~l~~~ 140 (173)
T 3kty_A 73 DTLEEALAPVT---LAFALTTRVRDLGPPPCDIREAAGLARRHLDDTEAGVVAIVLGTERAGLTNAQIELC 140 (173)
T ss_dssp SCHHHHHTTCS---EEEEEECC-----CCCEEHHHHHHHHHHHHHHSSSCCEEEEECCCC-CCCHHHHHTS
T ss_pred CCHHHHHHhCC---eEEEEccccccCCCCccCHHHHHHHHhhhhccccCCCEEEEECCCCCCCCHHHHHhC
Confidence 37888887653 3333332221 00 11121 2123568999999986 9999988753
No 17
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=82.52 E-value=2.7 Score=37.37 Aligned_cols=108 Identities=12% Similarity=0.141 Sum_probs=64.3
Q ss_pred eeccCCCcHHHHHHHHHhcCccEEEEeecccccccccccccccccccchhhchhchhhhhcCCCCcceeEcCCCCHhhhc
Q 045537 122 FGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLL 201 (291)
Q Consensus 122 ~~l~K~~r~d~iiekatELGV~~I~P~~se~~~RS~~~~~~k~eRw~~~~kIi~~~eA~kQs~r~~lP~I~~p~~l~~~l 201 (291)
-.+-.+..+--+++-|.-+|++.++. +. ++. +.|. ..+ +.++. ..-.++|... ..++.+++
T Consensus 111 d~v~dp~NlGaI~Rta~a~G~~~vil--~~---~~~-------~~~~---~~~--~ras~-Ga~~~l~~~~-~~~~~~~l 171 (253)
T 1gz0_A 111 DGVTDPHNLGACLRSADAAGVHAVIV--PK---DRS-------AQLN---ATA--KKVAC-GAAESVPLIR-VTNLARTM 171 (253)
T ss_dssp ESCCCHHHHHHHHHHHHHHTCSEEEE--ES---SSS-------CCCC---HHH--HHHHT-THHHHSCEEE-ESCHHHHH
T ss_pred eCCCCcCcHHHHHHHHHHhCCCEEEE--eC---CCC-------CCCC---HHH--Hhhhc-chheEEEEEE-eCCHHHHH
Confidence 45667888999999999999999864 33 221 1222 222 22222 1123455433 24788888
Q ss_pred cccCCCceEEEEeC-CCCChhhhhccCCCCCceEEEEcCCC-CCCHHHHHHH
Q 045537 202 PLVSQSKLAFVAIA-EATPLVTALSSSRNESSGLIIVGPEG-DFTEKEVNKI 251 (291)
Q Consensus 202 ~~~~~~~~~lv~~~-~~~~~~~~l~~~~~~~~i~lvIGPEG-Gfs~~Ei~~l 251 (291)
+.+...+..+++-. ++..... .....+++++++|.|| |++++..+..
T Consensus 172 ~~l~~~g~~i~~~~~~~~~~~~---~~~~~~~~alv~G~E~~Gls~~~~~~~ 220 (253)
T 1gz0_A 172 RMLQEENIWIVGTAGEADHTLY---QSKMTGRLALVMGAEGEGMRRLTREHC 220 (253)
T ss_dssp HHHHHTTCEEEEECTTCSEEGG---GSCCCSSEEEEEEBTTTBSCHHHHHTC
T ss_pred HHHHHCCCEEEEEECCCCcchh---hccCCCCEEEEECCCCcCcCHHHHHhC
Confidence 76654445555433 2221111 1123468999999999 9999887663
No 18
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=81.85 E-value=3.3 Score=29.64 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=25.9
Q ss_pred cCCCCCEEEEEeCCCCEEEEEEEEeeCC
Q 045537 69 RLSTNDRVELFNGKGGLIEGCIQRIDRT 96 (291)
Q Consensus 69 Rlk~Gd~i~v~dG~g~~~~a~I~~i~k~ 96 (291)
+.++||-|....-+|..|.|+|.+|++.
T Consensus 13 ~f~vGddVLA~wtDGl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 13 KFEEGQDVLARWSDGLFYLGTIKKINIL 40 (66)
T ss_dssp CSCTTCEEEEECTTSCEEEEEEEEEETT
T ss_pred cccCCCEEEEEEccCcEEEeEEEEEccC
Confidence 5899999999999999999999999975
No 19
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=81.60 E-value=2.6 Score=29.42 Aligned_cols=29 Identities=28% Similarity=0.260 Sum_probs=26.4
Q ss_pred cCCCCCEEEEEeCCCCEEEEEEEEeeCCc
Q 045537 69 RLSTNDRVELFNGKGGLIEGCIQRIDRTG 97 (291)
Q Consensus 69 Rlk~Gd~i~v~dG~g~~~~a~I~~i~k~~ 97 (291)
+.++||-|.+...+|..|.++|.++++..
T Consensus 3 ~f~~GedVLarwsDG~fYlGtI~~V~~~~ 31 (58)
T 4hcz_A 3 RLWEGQDVLARWTDGLLYLGTIKKVDSAR 31 (58)
T ss_dssp SCCTTCEEEEECTTSCEEEEEEEEEETTT
T ss_pred ccccCCEEEEEecCCCEEeEEEEEEecCC
Confidence 57899999999999999999999998764
No 20
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
Probab=80.63 E-value=3 Score=37.85 Aligned_cols=109 Identities=10% Similarity=-0.002 Sum_probs=64.4
Q ss_pred EeeccCCCcHHHHHHHHHhcCccEEEEeecccccccccccccccccccchhhchhchhhhhcCCCCcceeEcCCCCHhhh
Q 045537 121 AFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGL 200 (291)
Q Consensus 121 a~~l~K~~r~d~iiekatELGV~~I~P~~se~~~RS~~~~~~k~eRw~~~~kIi~~~eA~kQs~r~~lP~I~~p~~l~~~ 200 (291)
.-.+-.+..+--|++-|.-+|++.++.... +. +-|. .-+ ..++. ..-.++|-+. ..++.++
T Consensus 131 Ld~i~dP~NlGaIiRta~a~G~~~vil~~~-----~~-------d~~~---~kv--~ras~-Ga~~~l~i~~-~~~l~~~ 191 (287)
T 1x7o_A 131 FDRPTSPGNIGSIIRSADALGAHGLIVAGH-----AA-------DVYD---PKS--VRSST-GSLFSLPAVR-VPSPGEV 191 (287)
T ss_dssp EESCSCHHHHHHHHHHHHHTTCCEEEEESS-----SS-------CTTS---HHH--HHHTT-TGGGTSCEEE-ESSHHHH
T ss_pred EeCCCCcchHHHHHHHhHhcccCEEEEECC-----Cc-------CccC---HHH--Hhhhc-CcceeeeEEE-eCCHHHH
Confidence 346677888999999999999999984432 11 1122 222 21211 1122455443 4578888
Q ss_pred cccc---CCCceE--EEE-eCCCCChhhhhccCCCCCceEEEEcCCC-CCCHHHHHHH
Q 045537 201 LPLV---SQSKLA--FVA-IAEATPLVTALSSSRNESSGLIIVGPEG-DFTEKEVNKI 251 (291)
Q Consensus 201 l~~~---~~~~~~--lv~-~~~~~~~~~~l~~~~~~~~i~lvIGPEG-Gfs~~Ei~~l 251 (291)
++.+ ...+.. +++ +.++..... .....+++++++|.|| |++++.++..
T Consensus 192 l~~l~~~~~~g~~~~i~~~~~~~~~~~~---~~~~~~~~alV~GnE~~Gls~~~~~~~ 246 (287)
T 1x7o_A 192 MDWVEARRAAGTPIVLVGTDEHGDCDVF---DFDFTQPTLLLIGNETAGLSNAWRTLC 246 (287)
T ss_dssp HHHHHHHHHHTCCCEEEEECTTCSEEGG---GSCTTSCEEEEECBTTTBSCHHHHHHC
T ss_pred HHHHHHHHhcCCceEEEEEECCCCccHh---hcCCCCCEEEEECCCCCCCCHHHHHhC
Confidence 8766 433332 443 333222111 1123468999999998 9999987764
No 21
>1k3r_A Conserved protein MT0001; beta barrel, structural genomics, PSI; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: b.40.4.10 c.116.1.2
Probab=79.98 E-value=1.9 Score=39.09 Aligned_cols=45 Identities=27% Similarity=0.360 Sum_probs=33.7
Q ss_pred CCceEEEEc-CCCCCCHHHHHHHHHcCCe-EE----ecCCCccccchHHHHHHHHHHHc
Q 045537 230 ESSGLIIVG-PEGDFTEKEVNKIVEAGAT-AV----GLGPHRLRVETATIALLATLMLC 282 (291)
Q Consensus 230 ~~~i~lvIG-PEGGfs~~Ei~~l~~~Gf~-~v----sLG~rILRtETAai~ala~l~~~ 282 (291)
.+.+++++| |++|+-+- +|. -+ +-|.|..|||=|.+++||.+..+
T Consensus 210 ~~~~liVFG~~~~Gl~~~--------~fd~~~Nt~P~QGsrtIRtEEAv~itLa~L~~~ 260 (268)
T 1k3r_A 210 AREAAILFGGPYKGLPEI--------DADIWVNTLPGQCTETVRTEEAVLATLSVFNML 260 (268)
T ss_dssp CSEEEEECCCSSSCCCSC--------CCSEEEBSSTTCSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCccccchhh--------hcCeeEeccCCCCCccccHHHHHHHHHHHhhhh
Confidence 345777777 77999754 444 22 25999999999999999999654
No 22
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.27 E-value=1.6 Score=30.33 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=28.8
Q ss_pred ccCCCCCEEEEEeCCCCEEEEEEEEeeCCceEEEe
Q 045537 68 LRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVA 102 (291)
Q Consensus 68 LRlk~Gd~i~v~dG~g~~~~a~I~~i~k~~~~v~i 102 (291)
....+||.|+|.+|.-.-+.|+|.+++...+.+.+
T Consensus 6 ~~f~~GD~V~V~~Gpf~g~~G~V~evd~e~v~V~v 40 (59)
T 2e6z_A 6 SGFQPGDNVEVCEGELINLQGKILSVDGNKITIMP 40 (59)
T ss_dssp SSCCTTSEEEECSSTTTTCEEEECCCBTTEEEEEE
T ss_pred ccCCCCCEEEEeecCCCCCEEEEEEEeCCEEEEEE
Confidence 35789999999999766679999999987666554
No 23
>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, PORP gingivalis, knot, structural genomics, PSI-2, protein struc initiative; HET: MSE; 1.85A {Porphyromonas gingivalis}
Probab=76.18 E-value=2.8 Score=37.30 Aligned_cols=110 Identities=11% Similarity=0.090 Sum_probs=64.9
Q ss_pred EeeccCCCcHHHHHHHHHhcCccEEEEeecccccccccccccccccccchhhchhchhhhhcCCCCcceeEcCCCCHhhh
Q 045537 121 AFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGL 200 (291)
Q Consensus 121 a~~l~K~~r~d~iiekatELGV~~I~P~~se~~~RS~~~~~~k~eRw~~~~kIi~~~eA~kQs~r~~lP~I~~p~~l~~~ 200 (291)
.-.+-.+..+--|++-|.-+|++.++.. . ++. +-|. ..+ ..++.- .-.++|-+.. .++.++
T Consensus 108 Ld~v~dp~NlGaI~Rta~a~G~~~vil~--~---~~~-------~~~~---~~v--~ras~G-a~~~l~~~~~-~~l~~~ 168 (257)
T 2i6d_A 108 LDGVQDPGNVGTILRTADWFGIRHVWLG--T---GSA-------DVFS---PKV--VQASMG-ALARVQPTPL-KNTVDT 168 (257)
T ss_dssp EESCCCHHHHHHHHHHHHHHTCCEEEEC--T---TCC-------CTTS---HHH--HHTSTT-GGGTCEEEEC-SCHHHH
T ss_pred EECCCCcchHHHHHHHHHHhCCCEEEEc--C---CCC-------CcCC---HHH--heecCC-cceeeeEEEe-CCHHHH
Confidence 3466678889999999999999999743 3 221 1233 222 222222 2235666523 689998
Q ss_pred ccccCCCceEEEE-eCCC-CChhhhhccCCCCCceEEEEcCCC-CCCHHHHHHH
Q 045537 201 LPLVSQSKLAFVA-IAEA-TPLVTALSSSRNESSGLIIVGPEG-DFTEKEVNKI 251 (291)
Q Consensus 201 l~~~~~~~~~lv~-~~~~-~~~~~~l~~~~~~~~i~lvIGPEG-Gfs~~Ei~~l 251 (291)
++.+...+..+++ +..+ .++.+... ...+++++++|.|| |++++.++..
T Consensus 169 l~~l~~~g~~i~~~~~~~~~~~~~~~~--~~~~~~alv~GnE~~Gls~~~~~~~ 220 (257)
T 2i6d_A 169 LAYFRRQGIPVYGAFLDGQSLYEAPLP--NFTEPAILVLGSEGRGISPEVAAEI 220 (257)
T ss_dssp HHHHHHTTCCEEEEEEEEEETTTSCCC--CTTSCEEEEEEBTTTBSCHHHHTTC
T ss_pred HHHHHHCCCEEEEEECCCCccHHHhhh--CcCCCEEEEECCCCCCCCHHHHHhC
Confidence 8776543333333 2222 12221100 22468999999998 8999887664
No 24
>3l8u_A SMU.1707C, putative rRNA methylase; methyltransferase, knotted protein; 2.00A {Streptococcus mutans} SCOP: c.116.1.0
Probab=76.17 E-value=17 Score=30.48 Aligned_cols=110 Identities=9% Similarity=0.045 Sum_probs=59.4
Q ss_pred cceEEEEeeccCCCcHHHHHHHHHhcCccEEEEeecccccccccccccccccccchhhchhchhhhhcCCC-CcceeEcC
Q 045537 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQR-LHEMVLNP 193 (291)
Q Consensus 115 ~i~l~la~~l~K~~r~d~iiekatELGV~~I~P~~se~~~RS~~~~~~k~eRw~~~~kIi~~~eA~kQs~r-~~lP~I~~ 193 (291)
++.|+| -.+-.+..+--+++-|.-+|++.++ ... ++....+. +++ +.+ ++. .++| +..
T Consensus 17 ~l~vvL-d~v~dP~NlGaI~Rta~afG~~~vi--v~~---~~~~~~~~---------~~~--ras---~g~~~~v~-i~~ 75 (182)
T 3l8u_A 17 RNHVVL-FQPQIPANTGNIARTCAATNTSLHI--IRP---MGFPIDDK---------KMK--RAG---LDYWDKLD-VHF 75 (182)
T ss_dssp CEEEEE-ESCCCHHHHHHHHHHHHHHTCEEEE--ESC---CSSCCCTT---------TC-----------CCC-CC-EEE
T ss_pred CEEEEE-eCCCCcCcHHHHHHHHHHcCCcEEE--ECC---CCCCCCcH---------HHH--HhC---cChhhhCC-eEE
Confidence 444544 3566788899999999999996554 344 33211111 122 222 121 1233 233
Q ss_pred CCCHhhhccccCCCceEEEEeCCC-CChhhhhccCCCCCceEEEEcCCC-CCCHHHHH
Q 045537 194 PMKIDGLLPLVSQSKLAFVAIAEA-TPLVTALSSSRNESSGLIIVGPEG-DFTEKEVN 249 (291)
Q Consensus 194 p~~l~~~l~~~~~~~~~lv~~~~~-~~~~~~l~~~~~~~~i~lvIGPEG-Gfs~~Ei~ 249 (291)
..++.++++.+ +. ..+.+...+ .++.+ .. ....+++++++|.|| |+++++++
T Consensus 76 ~~~l~~~l~~l-g~-~i~~~~~~~~~~~~~-~~-~~~~~~~alV~G~E~~GLs~~~l~ 129 (182)
T 3l8u_A 76 YDSLNDFMNIC-SG-KLHLITKFANKTYSD-EN-YDDSEHHYFLFGREDKGLPEEFMR 129 (182)
T ss_dssp ESSHHHHHHHC-CS-EEEEECSSCSSBGGG-SC-CCSSSCEEEEECBTTTBSCHHHHH
T ss_pred cCCHHHHHHHC-CC-EEEEEEcCCCccccc-cc-cCCCCCEEEEECCccCCCCHHHHH
Confidence 45788888766 33 233444333 22221 11 111238999999996 99999886
No 25
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=75.71 E-value=6.5 Score=28.32 Aligned_cols=37 Identities=11% Similarity=0.047 Sum_probs=31.0
Q ss_pred ccCCCCCEEEEEeCCCCEEEEEEEEeeCCceEEEeee
Q 045537 68 LRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE 104 (291)
Q Consensus 68 LRlk~Gd~i~v~dG~g~~~~a~I~~i~k~~~~v~i~~ 104 (291)
-+.++||-|.+-..+|..|.++|++..+.++.|+...
T Consensus 14 ~~~~~geDVL~rw~DG~fYLGtIVd~~~~~ClV~FeD 50 (69)
T 2xk0_A 14 VTYALQEDVFIKCNDGRFYLGTIIDQTSDQYLIRFDD 50 (69)
T ss_dssp CCCCTTCEEEEECTTSCEEEEEEEEECSSCEEEEETT
T ss_pred cccccCCeEEEEecCCCEEEEEEEecCCceEEEEecC
Confidence 4678999999999999999999998888887766543
No 26
>3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode, structural genomics; 2.40A {Burkholderia pseudomallei 305} SCOP: c.116.1.0
Probab=74.27 E-value=3.9 Score=33.64 Aligned_cols=111 Identities=10% Similarity=0.058 Sum_probs=61.7
Q ss_pred ceEEEEeeccCCCcHHHHHHHHHhcCccEEEEeecccccccccccccccccccchhhchhchhhhhcCCC-CcceeEcCC
Q 045537 116 WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQR-LHEMVLNPP 194 (291)
Q Consensus 116 i~l~la~~l~K~~r~d~iiekatELGV~~I~P~~se~~~RS~~~~~~k~eRw~~~~kIi~~~eA~kQs~r-~~lP~I~~p 194 (291)
+.|+| -.+-.+..+--+++-|.-.|++-++ ... ++.. -+. +.+ ..|+ ++. .++|-. ..
T Consensus 6 l~vvL-d~i~dp~NlGaI~Rta~a~G~~~vi--v~~---~~~~-------~~~---~~~--~ras--~g~~~~~~~~-~~ 64 (160)
T 3e5y_A 6 FNVVL-VEPEIPPNTGNVIRLCANTGARLHL--IEP---LGFP-------LDD---AKM--RRAG--LDYHEYAQMR-VH 64 (160)
T ss_dssp CEEEE-ESCCCHHHHHHHHHHHHHHTCEEEE--ESS---CSSC-------CCH---HHH--HHTT--CCHHHHHTCE-EE
T ss_pred EEEEE-eCCCCCCcHHHHHHHHHHcCCcEEE--ECC---CCCC-------Ccc---HHH--HHHc--CCchhhcceE-Ee
Confidence 44444 3556778899999999999995444 344 3221 111 212 1111 011 123322 23
Q ss_pred CCHhhhccccCCCceEEEEe-CCCCChhhhhccCCCCCceEEEEcCCC-CCCHHHHHH
Q 045537 195 MKIDGLLPLVSQSKLAFVAI-AEATPLVTALSSSRNESSGLIIVGPEG-DFTEKEVNK 250 (291)
Q Consensus 195 ~~l~~~l~~~~~~~~~lv~~-~~~~~~~~~l~~~~~~~~i~lvIGPEG-Gfs~~Ei~~ 250 (291)
.+++++++.++..+..+++- .++..... +..-.+++++++|.|| |+++++++.
T Consensus 65 ~~l~~~l~~l~~~g~~i~~~~~~~~~~~~---~~~~~~~~alv~G~E~~Gls~~~l~~ 119 (160)
T 3e5y_A 65 RDWDAFVAAEAPDPARMFAFTTRGSGRFH---DRAFEPGDWFVFGAETRGLAPALVDR 119 (160)
T ss_dssp SSHHHHHHHHCCCGGGEEEECSTTCEEGG---GSCCCTTCEEEEEBTTTBSCHHHHTT
T ss_pred CCHHHHHHHHHhCCCEEEEEecCCCcccc---ccCCCCCEEEEECCCcCCCCHHHHhh
Confidence 47888887765444444443 33221111 2223467899999996 999998876
No 27
>3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.90A {Rhodobacter sphaeroides}
Probab=67.78 E-value=7.3 Score=34.57 Aligned_cols=114 Identities=10% Similarity=-0.008 Sum_probs=62.4
Q ss_pred ceEEEEeeccCCCcHHHHHHHHHhcCccEEEEeecccccccccccccccccccchhhchhchhhhhcCCCCcceeEcCCC
Q 045537 116 WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPM 195 (291)
Q Consensus 116 i~l~la~~l~K~~r~d~iiekatELGV~~I~P~~se~~~RS~~~~~~k~eRw~~~~kIi~~~eA~kQs~r~~lP~I~~p~ 195 (291)
+.|+|. .+-.+..+--+++-|.-.|++.++.+... +. .. .. +.+ ..|+ -+. ..+|.+....
T Consensus 5 ~~vVL~-~~~dP~NiGai~Rta~a~G~~~l~Lv~p~----~~----~~---~~---~a~--~~a~-GA~-~~l~~~~~~~ 65 (249)
T 3onp_A 5 PVFILV-RPQMGENIGAAARAMLNFGLGRLRIVDPR----DG----WP---NP---KAV--AMAS-GAG-RLLDHAGLFP 65 (249)
T ss_dssp CEEEEE-SCCCHHHHHHHHHHHHHTTCCCEEEESCT----TC----SS---CH---HHH--HHHG-GGH-HHHHTCEEES
T ss_pred eEEEEe-CCCCCChHHHHHHHHHHcCCCEEEEeCCC----cC----CC---cH---HHH--HHcC-Ccc-ccCceEEEeC
Confidence 344443 45667889999999999999999866543 10 00 11 222 1111 111 2344443345
Q ss_pred CHhhhccccCCCceEEEEeCCCCChhhh----------h-ccCCCCCceEEEEcCCC-CCCHHHHHHH
Q 045537 196 KIDGLLPLVSQSKLAFVAIAEATPLVTA----------L-SSSRNESSGLIIVGPEG-DFTEKEVNKI 251 (291)
Q Consensus 196 ~l~~~l~~~~~~~~~lv~~~~~~~~~~~----------l-~~~~~~~~i~lvIGPEG-Gfs~~Ei~~l 251 (291)
+++++++.+ ...+.......+.... + ......+++++++|.|| |+|++|++..
T Consensus 66 ~l~eal~~~---~~v~att~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~aLVfG~E~~GLs~e~l~~~ 130 (249)
T 3onp_A 66 TVAEAIRDC---DYVFATTARGRELTKPVMTPERAMAHGRALTGEGRRVGILFGPERTGLENEDVALA 130 (249)
T ss_dssp SHHHHHTTC---SEEEEEESSCCCSSSCEECHHHHHHHHHHHHHTTCCEEEEECCTTTCCCHHHHTTS
T ss_pred CHHHHHHhC---CeEEEEcCCCCCCCcccCCHHHHHHHHHHhhccCCCEEEEECCCcCCCCHHHHHhC
Confidence 788887654 2333333222221100 0 00001347999999996 9999998764
No 28
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=65.87 E-value=15 Score=25.48 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=26.6
Q ss_pred ccCCCCCEEEEE-eCCCCEEEEEEEEeeC--CceEEEe
Q 045537 68 LRLSTNDRVELF-NGKGGLIEGCIQRIDR--TGLDVVA 102 (291)
Q Consensus 68 LRlk~Gd~i~v~-dG~g~~~~a~I~~i~k--~~~~v~i 102 (291)
...++||.+... ..+|..|+|+|++++. ..+.|..
T Consensus 7 ~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~f 44 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITF 44 (64)
T ss_dssp SCCCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEE
T ss_pred CCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEE
Confidence 357899998765 4689999999999986 3555543
No 29
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.42 E-value=14 Score=26.79 Aligned_cols=35 Identities=11% Similarity=0.067 Sum_probs=26.9
Q ss_pred ccCCCCCEEEEEeCCCCEEEEEEEEeeC-CceEEEe
Q 045537 68 LRLSTNDRVELFNGKGGLIEGCIQRIDR-TGLDVVA 102 (291)
Q Consensus 68 LRlk~Gd~i~v~dG~g~~~~a~I~~i~k-~~~~v~i 102 (291)
...++||.+...-.+|..|.|+|++++. ..+.|..
T Consensus 8 ~~~kvGd~clA~wsDg~~Y~A~I~~v~~~~~~~V~f 43 (74)
T 2equ_A 8 FDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQF 43 (74)
T ss_dssp CCCCTTCEEEEECSSSSEEEEEEEEESTTSSEEEEE
T ss_pred CCCCCCCEEEEECCCCCEEEEEEEEECCCCEEEEEE
Confidence 4578999987655589999999999986 4455543
No 30
>3n4j_A RNA methyltransferase; center for structural genomics of INF diseases, csgid; 1.47A {Yersinia pestis} SCOP: c.116.1.1 PDB: 3n4k_A* 1mxi_A* 1j85_A*
Probab=64.19 E-value=11 Score=31.05 Aligned_cols=111 Identities=11% Similarity=0.117 Sum_probs=60.6
Q ss_pred ceEEEEeeccCCCcHHHHHHHHHhcCccEEEEeecccccccccccccccccccchhhchhchhhhhcCCC-CcceeEcCC
Q 045537 116 WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQR-LHEMVLNPP 194 (291)
Q Consensus 116 i~l~la~~l~K~~r~d~iiekatELGV~~I~P~~se~~~RS~~~~~~k~eRw~~~~kIi~~~eA~kQs~r-~~lP~I~~p 194 (291)
+.|+| -.+-.+..+--|++-|.-+|++-++ ... ++... +. +.+ ..|+. +- .++|-. ..
T Consensus 5 ~~vvL-~~~~dp~NlGaI~Rta~a~G~~~vi--v~~---~~~~~-------~~---~~~--~ras~--g~~~~~~~~-~~ 63 (165)
T 3n4j_A 5 LNIVL-FEPEIPPNTGNIIRLCANTGCQLHL--IKP---LGFTW-------DD---KRL--RRAGL--DYHEFADIK-HH 63 (165)
T ss_dssp EEEEE-ESCCCHHHHHHHHHHHHHHTCEEEE--ESC---CSSCC-------CH---HHH--HHTTC--CHHHHTTCE-EE
T ss_pred EEEEE-eCCCCCCcHHHHHHHHHHcCCeEEE--ECC---CCCCC-------cc---HHH--HHhcc--CceeecCeE-Ee
Confidence 34443 3455678899999999999996443 344 32211 11 122 11110 11 123322 23
Q ss_pred CCHhhhccccCC---CceEEEE-eCCCCChhhhhccCCCCCceEEEEcCCC-CCCHHHHHH
Q 045537 195 MKIDGLLPLVSQ---SKLAFVA-IAEATPLVTALSSSRNESSGLIIVGPEG-DFTEKEVNK 250 (291)
Q Consensus 195 ~~l~~~l~~~~~---~~~~lv~-~~~~~~~~~~l~~~~~~~~i~lvIGPEG-Gfs~~Ei~~ 250 (291)
.+++++++.++. .+..+++ ..++..... +..-.+++++++|.|| |++++.++.
T Consensus 64 ~~l~~~l~~lk~~~~~g~~i~~~~~~~~~~~~---~~~~~~~~alv~G~E~~Gls~~~l~~ 121 (165)
T 3n4j_A 64 HDYQAFLDSEKLDSTQPARLFALTTKGTPAHS---AVSYQANDYLLFGPETRGLPAYILDA 121 (165)
T ss_dssp SSHHHHHHHTTCCSSSCTTEEEECTTCSSBTT---TSCCCTTEEEEECCTTTCSCHHHHTT
T ss_pred CCHHHHHHHHHhhccCCCEEEEEEcCCCcchh---hccCCCCeEEEECCCCCCCCHHHHhh
Confidence 478888877643 2333333 333221111 1223468999999996 999998876
No 31
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=63.40 E-value=5.4 Score=27.09 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=23.7
Q ss_pred ccCCCCCEEEEEeCCCCEEEEEEEEeeCCc
Q 045537 68 LRLSTNDRVELFNGKGGLIEGCIQRIDRTG 97 (291)
Q Consensus 68 LRlk~Gd~i~v~dG~g~~~~a~I~~i~k~~ 97 (291)
...++||.|.+.+|-=.-+.|+|.+++...
T Consensus 3 ~~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k 32 (58)
T 1nz9_A 3 VAFREGDQVRVVSGPFADFTGTVTEINPER 32 (58)
T ss_dssp CSCCTTCEEEECSGGGTTCEEEEEEEETTT
T ss_pred cccCCCCEEEEeecCCCCcEEEEEEEcCCC
Confidence 357899999999996444589999998653
No 32
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=62.53 E-value=11 Score=26.90 Aligned_cols=28 Identities=7% Similarity=0.144 Sum_probs=25.1
Q ss_pred cCCCCCEEEEEeCCCCEEEEEEEEeeCC
Q 045537 69 RLSTNDRVELFNGKGGLIEGCIQRIDRT 96 (291)
Q Consensus 69 Rlk~Gd~i~v~dG~g~~~~a~I~~i~k~ 96 (291)
..++||.+...-+++..|.|+|++++++
T Consensus 6 ~~~vGd~vmArW~D~~yYpA~I~si~~~ 33 (67)
T 3p8d_A 6 EFQINEQVLACWSDCRFYPAKVTAVNKD 33 (67)
T ss_dssp CCCTTCEEEEECTTSCEEEEEEEEECTT
T ss_pred ccccCCEEEEEcCCCCEeeEEEEEECCC
Confidence 4689999988889999999999999886
No 33
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.18 E-value=20 Score=25.67 Aligned_cols=28 Identities=29% Similarity=0.281 Sum_probs=25.5
Q ss_pred cCCCCCEEEEEeCCCCEEEEEEEEeeCC
Q 045537 69 RLSTNDRVELFNGKGGLIEGCIQRIDRT 96 (291)
Q Consensus 69 Rlk~Gd~i~v~dG~g~~~~a~I~~i~k~ 96 (291)
+.++||-|....-+|..|.++|.++++.
T Consensus 9 ~f~eGqdVLarWsDGlfYlGtV~kV~~~ 36 (68)
T 2e5p_A 9 RLWEGQDVLARWTDGLLYLGTIKKVDSA 36 (68)
T ss_dssp CCCTTCEEEEECTTSSEEEEEEEEEETT
T ss_pred ccccCCEEEEEecCCcEEEeEEEEEecC
Confidence 6789999999999999999999999963
No 34
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=60.75 E-value=17 Score=25.59 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=23.3
Q ss_pred cCCCCCEEEEEeCCCCEEEEEEEEee
Q 045537 69 RLSTNDRVELFNGKGGLIEGCIQRID 94 (291)
Q Consensus 69 Rlk~Gd~i~v~dG~g~~~~a~I~~i~ 94 (291)
-.++|.++++.|..+..|.|+|++++
T Consensus 12 ~F~vGmkLEa~d~~~p~~~AtV~~v~ 37 (69)
T 3sd4_A 12 SFEVGAQLEARDRLKNWYPAHIEDID 37 (69)
T ss_dssp CCSTTCEEEEECTTSCEEEEEEEEEE
T ss_pred CcCCCCEEEEEECCCCccccEEEEEe
Confidence 36899999999999988999999984
No 35
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=60.43 E-value=14 Score=29.66 Aligned_cols=33 Identities=12% Similarity=0.279 Sum_probs=29.2
Q ss_pred CCCEEEEEeCCCCEEEEEEEEeeCCceEEEeee
Q 045537 72 TNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE 104 (291)
Q Consensus 72 ~Gd~i~v~dG~g~~~~a~I~~i~k~~~~v~i~~ 104 (291)
.+..|+|.+.+|..|.|.|.++.++++.+....
T Consensus 4 ~~~~VEV~~~~G~~y~a~V~~v~~d~~~V~f~n 36 (128)
T 3h8z_A 4 QGLPVEVRGSNGAFYKGFVKDVHEDSVTIFFEN 36 (128)
T ss_dssp TTCEEEEECTTSCEEEEEEEEECSSEEEEEETT
T ss_pred cccEEEEecCCCCEEEEEEEEEeCCcEEEEEcc
Confidence 578999999999999999999999998887643
No 36
>3ic6_A Putative methylase family protein; putative methylase family Pro structural genomics, PSI-2, protein structure initiative; 2.59A {Neisseria gonorrhoeae fa 1090}
Probab=58.26 E-value=17 Score=31.75 Aligned_cols=35 Identities=9% Similarity=0.075 Sum_probs=26.5
Q ss_pred ceEEEEeeccCCCcHHHHHHHHHhcCccEEEEeecc
Q 045537 116 WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTE 151 (291)
Q Consensus 116 i~l~la~~l~K~~r~d~iiekatELGV~~I~P~~se 151 (291)
+.|+|. .+-.+..+--+++-|.-.|++.++.+...
T Consensus 18 l~vVLd-~~~dP~NiGaI~Rta~afG~~~l~Lv~p~ 52 (223)
T 3ic6_A 18 IRIILT-RTSHPANIGSAARAMKTMGLHRLTIVTPN 52 (223)
T ss_dssp EEEEEE-SCCCHHHHHHHHHHHHHTTCCCEEEESCC
T ss_pred EEEEEe-CCCCCChHHHHHHHHHHcCCCEEEEeCCC
Confidence 444443 45567889999999999999999876543
No 37
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=57.93 E-value=5.2 Score=31.61 Aligned_cols=40 Identities=20% Similarity=0.111 Sum_probs=30.4
Q ss_pred hhHHHHcccCCCCCEEEEEeCCCCEEEEEEEEeeCCceEE
Q 045537 61 FWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV 100 (291)
Q Consensus 61 ~~Hl~kVLRlk~Gd~i~v~dG~g~~~~a~I~~i~k~~~~v 100 (291)
..|..+-|+++.||.|.|+-|...=-.++|.++..+.-.+
T Consensus 7 ~~~~~rkm~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~V 46 (115)
T 2zjr_R 7 GSHHNDKLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKV 46 (115)
T ss_dssp STTTTSCCSSCTTSEEECCSSSSTTCEEEEEEEETTTTEE
T ss_pred ccccceeCcccCCCEEEEeEcCCCCcEEEEEEEECCCCEE
Confidence 4677788999999999999995333378999998554333
No 38
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=57.31 E-value=15 Score=27.57 Aligned_cols=31 Identities=10% Similarity=0.168 Sum_probs=26.2
Q ss_pred cccCCCCCEEEEEeCCCCEEEEEEEEeeCCc
Q 045537 67 VLRLSTNDRVELFNGKGGLIEGCIQRIDRTG 97 (291)
Q Consensus 67 VLRlk~Gd~i~v~dG~g~~~~a~I~~i~k~~ 97 (291)
.-..++||.+...-++|..|.|+|+++++..
T Consensus 19 ~~~f~vGd~VlArW~D~~yYPAkI~sV~~~~ 49 (85)
T 3qii_A 19 SSEFQINEQVLACWSDCRFYPAKVTAVNKDG 49 (85)
T ss_dssp --CCCTTCEEEEECTTSCEEEEEEEEECTTS
T ss_pred CcccccCCEEEEEeCCCCEeeEEEEEECCCC
Confidence 4568899999988899999999999998863
No 39
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=57.31 E-value=19 Score=23.90 Aligned_cols=32 Identities=6% Similarity=0.020 Sum_probs=22.5
Q ss_pred CCCCCEEEEE-eCCCCEEEEEEEEeeCC--ceEEE
Q 045537 70 LSTNDRVELF-NGKGGLIEGCIQRIDRT--GLDVV 101 (291)
Q Consensus 70 lk~Gd~i~v~-dG~g~~~~a~I~~i~k~--~~~v~ 101 (291)
-++||.+... ..+|.-|+|+|+++... .+.|.
T Consensus 2 wk~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~ 36 (54)
T 3s6w_A 2 WKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVK 36 (54)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEC--CCSEEEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEE
Confidence 4789988765 46889999999998643 34443
No 40
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=57.12 E-value=9.2 Score=31.01 Aligned_cols=46 Identities=24% Similarity=0.193 Sum_probs=34.1
Q ss_pred EEcchhhhHHHHc----ccCCCCCEEEEEeCCCCEEEEEEEEeeCCceEE
Q 045537 55 RVEGDEFWHMTKV----LRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV 100 (291)
Q Consensus 55 ~L~~~~~~Hl~kV----LRlk~Gd~i~v~dG~g~~~~a~I~~i~k~~~~v 100 (291)
.+++++..++.+. ...++||.|.|.+|-=.-+.|.|.+++...-.+
T Consensus 73 ~v~~~Ei~~il~~~~~~~~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~k~~v 122 (152)
T 3p8b_B 73 EVPFKEIEHFLEEKPAVSGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEV 122 (152)
T ss_dssp CBCGGGTGGGCCCSCTTTTCCTTCEEEECSSTTTTCEEEEEEEETTTTEE
T ss_pred CCCHHHHHHHhCcCCccccCCCCCEEEEeeecCCCCEEEEEEEeCCCCEE
Confidence 5777887777554 346889999999996555689999998654333
No 41
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=56.07 E-value=30 Score=23.39 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=25.7
Q ss_pred cCCCCCEEEEE-eCCCCEEEEEEEEeeC--CceEEEe
Q 045537 69 RLSTNDRVELF-NGKGGLIEGCIQRIDR--TGLDVVA 102 (291)
Q Consensus 69 Rlk~Gd~i~v~-dG~g~~~~a~I~~i~k--~~~~v~i 102 (291)
..++||.+... ..+|..|+|+|++++. ..+.|..
T Consensus 3 ~~~~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f 39 (59)
T 1mhn_A 3 QWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVY 39 (59)
T ss_dssp CCCTTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred cCCcCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEE
Confidence 46899988764 4578999999999985 4555543
No 42
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=55.31 E-value=24 Score=26.33 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=26.4
Q ss_pred cCCCCCEEEEE-eCCCCEEEEEEEEeeC--CceEEEe
Q 045537 69 RLSTNDRVELF-NGKGGLIEGCIQRIDR--TGLDVVA 102 (291)
Q Consensus 69 Rlk~Gd~i~v~-dG~g~~~~a~I~~i~k--~~~~v~i 102 (291)
..++||.+... ..+|..|+|+|.+++. ..+.|..
T Consensus 10 ~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~f 46 (88)
T 1g5v_A 10 QWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVY 46 (88)
T ss_dssp CCCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEEE
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEecCCCCEEEEEE
Confidence 57899998764 4689999999999986 5555543
No 43
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=53.70 E-value=13 Score=27.30 Aligned_cols=29 Identities=28% Similarity=0.245 Sum_probs=26.0
Q ss_pred ccCCCCCEEEEEeCCCCEEEEEEEEeeCC
Q 045537 68 LRLSTNDRVELFNGKGGLIEGCIQRIDRT 96 (291)
Q Consensus 68 LRlk~Gd~i~v~dG~g~~~~a~I~~i~k~ 96 (291)
-+..+||-|.+...+|..|.++|.++++.
T Consensus 25 ~~f~eGeDVLarwsDGlfYLGTI~kV~~~ 53 (79)
T 2m0o_A 25 PRLWEGQDVLARWTDGLLYLGTIKKVDSA 53 (79)
T ss_dssp CCCCTTCEEEBCCTTSCCCEEEEEEEETT
T ss_pred ceeccCCEEEEEecCCCEEeEEEEEeccC
Confidence 37899999999999999999999999864
No 44
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.59 E-value=20 Score=25.30 Aligned_cols=28 Identities=21% Similarity=0.159 Sum_probs=25.3
Q ss_pred cCCCCCEEEEEeCCCCEEEEEEEEeeCC
Q 045537 69 RLSTNDRVELFNGKGGLIEGCIQRIDRT 96 (291)
Q Consensus 69 Rlk~Gd~i~v~dG~g~~~~a~I~~i~k~ 96 (291)
+.++||-|....-+|..|.++|.++++.
T Consensus 7 ~f~eGqdVLarWsDGlfYlgtV~kV~~~ 34 (63)
T 2e5q_A 7 GLTEGQYVLCRWTDGLYYLGKIKRVSSS 34 (63)
T ss_dssp CCCTTCEEEEECTTSCEEEEEECCCCST
T ss_pred ceecCCEEEEEecCCCEEEEEEEEEecC
Confidence 5789999999999999999999999854
No 45
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=49.78 E-value=14 Score=30.72 Aligned_cols=50 Identities=16% Similarity=0.208 Sum_probs=25.0
Q ss_pred cEEEEcchhhhHHHHcc-----------cCCCCCEEEEEeCCCCEEEEEEEEeeCC--ceEEE
Q 045537 52 GIVRVEGDEFWHMTKVL-----------RLSTNDRVELFNGKGGLIEGCIQRIDRT--GLDVV 101 (291)
Q Consensus 52 ~~v~L~~~~~~Hl~kVL-----------Rlk~Gd~i~v~dG~g~~~~a~I~~i~k~--~~~v~ 101 (291)
....|++++..++.+.+ ...+||.|.|.+|-=.-+.|+|.+++.. .+.+.
T Consensus 99 ~P~pl~~~ei~~i~~~~~~~~~~~~~~~~~~~Gd~V~V~~GPf~g~~G~v~~v~~~k~r~~V~ 161 (181)
T 2jvv_A 99 RPAPISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVS 161 (181)
T ss_dssp ------------------------CCCCCCCTTEEEEECSSTTTTEEEEEEEEETTTTEEEEE
T ss_pred eEeEcCHHHHHHHHHHhhccccCCCccccCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEE
Confidence 34557777776664433 4568999999999655579999999743 45443
No 46
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=48.97 E-value=32 Score=25.60 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=24.0
Q ss_pred cCCCCCEEEEEeCCCCEEEEEEEEeeCC
Q 045537 69 RLSTNDRVELFNGKGGLIEGCIQRIDRT 96 (291)
Q Consensus 69 Rlk~Gd~i~v~dG~g~~~~a~I~~i~k~ 96 (291)
..++|++|+..|-.+..|.|.|+.++..
T Consensus 19 ~F~vGmkLEA~D~~~~~~~a~i~~v~~~ 46 (88)
T 2eqm_A 19 TFEIGARLEALDYLQKWYPSRIEKIDYE 46 (88)
T ss_dssp CCCSSCEEEEECTTSCEEEEEEEEEETT
T ss_pred cCCCCCEEEEEcCCCCeeEEEEEEEecc
Confidence 3789999999999999999999877643
No 47
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=48.40 E-value=12 Score=29.71 Aligned_cols=47 Identities=19% Similarity=0.196 Sum_probs=33.0
Q ss_pred EEEcch-hhhHHHHcccCCCCCEEEEEeCCCCEEEEEEEEeeCCceEE
Q 045537 54 VRVEGD-EFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV 100 (291)
Q Consensus 54 v~L~~~-~~~Hl~kVLRlk~Gd~i~v~dG~g~~~~a~I~~i~k~~~~v 100 (291)
..|+.| ...|-.+-++++.||.|.|+-|...=-.++|..+..+.-.+
T Consensus 26 a~LskeLr~ky~vr~~~IkkGD~V~Vi~G~dKGk~GkV~~V~~k~~~V 73 (120)
T 1vq8_T 26 ATLSADLREEYGQRNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVI 73 (120)
T ss_dssp EEECHHHHHHHTCSEEECCTTCEEEECSSTTTTCEEEEEEEETTTTEE
T ss_pred CcCCHHHHHhhccccccccCCCEEEEEecCCCCCEEEEEEEECCCCEE
Confidence 445543 34465688999999999999995332478999998554333
No 48
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=47.16 E-value=37 Score=24.47 Aligned_cols=34 Identities=6% Similarity=-0.018 Sum_probs=25.5
Q ss_pred ccCCCCCEEEEE-eCCCCEEEEEEEEeeCC--ceEEE
Q 045537 68 LRLSTNDRVELF-NGKGGLIEGCIQRIDRT--GLDVV 101 (291)
Q Consensus 68 LRlk~Gd~i~v~-dG~g~~~~a~I~~i~k~--~~~v~ 101 (291)
-..++||.+... ..+|..|+|+|+++... .+.|.
T Consensus 16 ~~~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~~~~~V~ 52 (77)
T 3pnw_C 16 KMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVK 52 (77)
T ss_dssp TTCCTTCEEEEEETTTTEEEEEEEEEECTTSSEEEEE
T ss_pred CCCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEE
Confidence 357899998765 46889999999999753 44443
No 49
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=43.13 E-value=30 Score=27.40 Aligned_cols=27 Identities=11% Similarity=0.218 Sum_probs=24.3
Q ss_pred CCCCCEEEEEeCCCCEEEEEEEEeeCC
Q 045537 70 LSTNDRVELFNGKGGLIEGCIQRIDRT 96 (291)
Q Consensus 70 lk~Gd~i~v~dG~g~~~~a~I~~i~k~ 96 (291)
+++||.|..-..+|+.|.|+|+.+...
T Consensus 6 v~vGq~V~akh~ngryy~~~V~~~~~~ 32 (118)
T 2qqr_A 6 ITAGQKVISKHKNGRFYQCEVVRLTTE 32 (118)
T ss_dssp CCTTCEEEEECTTSSEEEEEEEEEEEE
T ss_pred eccCCEEEEECCCCCEEeEEEEEEeeE
Confidence 679999999999999999999998654
No 50
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=42.76 E-value=77 Score=25.44 Aligned_cols=40 Identities=18% Similarity=0.022 Sum_probs=33.8
Q ss_pred cccCCCCCEEEEEeCCCCEEEEEEEEeeCCceEEEeeecc
Q 045537 67 VLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDL 106 (291)
Q Consensus 67 VLRlk~Gd~i~v~dG~g~~~~a~I~~i~k~~~~v~i~~~~ 106 (291)
-..+++|+.+.+-+.+|....++|++++...+++-...++
T Consensus 91 ~~~~~~G~~~~~~~~~G~~~~~~V~~v~~~~v~vD~NHPL 130 (151)
T 2kr7_A 91 GIELEKGMSVFGQTEDNQTIQAIIKDFSATHVMVDYNHPL 130 (151)
T ss_dssp TSCCCTTCEEEEEETTTEEEEEEEEEECSSEEEEEECCTT
T ss_pred CCCCccCCEEEEECCCCCEEEEEEEEECCCEEEEECCCcC
Confidence 3679999999999988988999999999999887665543
No 51
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=42.18 E-value=53 Score=23.58 Aligned_cols=34 Identities=6% Similarity=-0.022 Sum_probs=25.5
Q ss_pred cCCCCCEEEEEe-CCCCEEEEEEEEeeC--CceEEEe
Q 045537 69 RLSTNDRVELFN-GKGGLIEGCIQRIDR--TGLDVVA 102 (291)
Q Consensus 69 Rlk~Gd~i~v~d-G~g~~~~a~I~~i~k--~~~~v~i 102 (291)
..++||.+...- .+|..|+|+|+++.. ..+.|..
T Consensus 9 ~~~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~f 45 (78)
T 2d9t_A 9 VWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKF 45 (78)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEE
T ss_pred CCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEE
Confidence 468899887643 578999999999976 4555543
No 52
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=41.04 E-value=24 Score=25.33 Aligned_cols=31 Identities=19% Similarity=0.248 Sum_probs=24.5
Q ss_pred CCCCCEEEEEeCCCCEEEEEEEEeeCCceEE
Q 045537 70 LSTNDRVELFNGKGGLIEGCIQRIDRTGLDV 100 (291)
Q Consensus 70 lk~Gd~i~v~dG~g~~~~a~I~~i~k~~~~v 100 (291)
.++||.|.|..|+-.--.+.|..++.+.+.+
T Consensus 18 F~~GDHVkVi~G~~~getGlVV~v~~d~v~v 48 (69)
T 2do3_A 18 FKMGDHVKVIAGRFEGDTGLIVRVEENFVIL 48 (69)
T ss_dssp CCTTCEEEESSSTTTTCEEEEEEECSSCEEE
T ss_pred ccCCCeEEEeccEEcCceEEEEEEeCCEEEE
Confidence 6899999999995322378899998887765
No 53
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=39.87 E-value=32 Score=27.57 Aligned_cols=26 Identities=0% Similarity=-0.133 Sum_probs=23.2
Q ss_pred cCCCCCEEEEEeCCCCEEEEEEEEee
Q 045537 69 RLSTNDRVELFNGKGGLIEGCIQRID 94 (291)
Q Consensus 69 Rlk~Gd~i~v~dG~g~~~~a~I~~i~ 94 (291)
.+.+|+.|.++.++|..|.|+|.++.
T Consensus 12 ~~~vGe~v~~~~~d~~~y~AkIl~i~ 37 (133)
T 1wgs_A 12 TVEIGETYLCRRPDSTWHSAEVIQSR 37 (133)
T ss_dssp CCCTTSEEEEEETTTEEEEEEEEEEE
T ss_pred ccCCCCEEEEEeCCCCEEEEEEEEEE
Confidence 46899999999998999999998865
No 54
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=39.03 E-value=29 Score=28.17 Aligned_cols=46 Identities=17% Similarity=0.314 Sum_probs=35.0
Q ss_pred EEEEcch-hhhHHHHcccCCCCCEEEEEeCC--CCEEEEEEEEeeCCceEE
Q 045537 53 IVRVEGD-EFWHMTKVLRLSTNDRVELFNGK--GGLIEGCIQRIDRTGLDV 100 (291)
Q Consensus 53 ~v~L~~~-~~~Hl~kVLRlk~Gd~i~v~dG~--g~~~~a~I~~i~k~~~~v 100 (291)
...|+.| ...|=.+-|+++.||+|.|+-|. |. .++|+.+..+.-.+
T Consensus 31 sa~LSkeLr~ky~vRs~~IkkgD~V~Vi~GkdKGk--~GkV~~V~~kk~~V 79 (135)
T 4a17_S 31 SAHLSKDLRSKYNVRSMPVRKDDEVLIVRGKFKGN--KGKVTQVYRKKWAI 79 (135)
T ss_dssp EEEECHHHHHHHTCSEEECCTTCEEEECSSTTTTC--EEEEEEEETTTTEE
T ss_pred eCcCCHHHHHHhCCCcccccCCCEEEEeecCCCCc--eeeEEEEEcCCCEE
Confidence 3556664 56677799999999999999884 55 69999998664443
No 55
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=37.07 E-value=19 Score=26.37 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=22.1
Q ss_pred cCCCCCEEEEEeCCCCEEEEEEEEee
Q 045537 69 RLSTNDRVELFNGKGGLIEGCIQRID 94 (291)
Q Consensus 69 Rlk~Gd~i~v~dG~g~~~~a~I~~i~ 94 (291)
|+.+||.|+++...|..+..+|.++-
T Consensus 29 ~f~~GD~iEi~~P~g~~~~~~v~~m~ 54 (89)
T 4he6_A 29 HFRPGDEVEFFGPEIENFTQVIEKIW 54 (89)
T ss_dssp CBCTTCEEEEESTTSCCEEEECCCEE
T ss_pred CcCCCCEEEEEcCCCCcEEEEeHHeE
Confidence 68899999999998877888887664
No 56
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=36.33 E-value=57 Score=27.05 Aligned_cols=39 Identities=13% Similarity=0.074 Sum_probs=33.0
Q ss_pred cccCCCCCEEEEEeCCCCEEEEEEEEeeCCceEEEeeec
Q 045537 67 VLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALED 105 (291)
Q Consensus 67 VLRlk~Gd~i~v~dG~g~~~~a~I~~i~k~~~~v~i~~~ 105 (291)
...+++|..+.+-+.+|....++|++++...+++-...+
T Consensus 110 ~~~~~~G~~~~~~~~~G~~~~~~V~~v~~~~V~vD~NHP 148 (169)
T 4dt4_A 110 AGEPEIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHP 148 (169)
T ss_dssp TCCCCTTCEEEEECTTSCEEEEEEEEEETTEEEEECSCT
T ss_pred cCCCCCCcEEEEECCCCCEEEEEEEEEcCCEEEEeCCCc
Confidence 457899999999888899999999999999888765544
No 57
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=35.96 E-value=22 Score=31.80 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=32.6
Q ss_pred ceEEEEcCC-CCCCHHHHHHHHHcCCeEEe-----------cCCCccccch
Q 045537 232 SGLIIVGPE-GDFTEKEVNKIVEAGATAVG-----------LGPHRLRVET 270 (291)
Q Consensus 232 ~i~lvIGPE-GGfs~~Ei~~l~~~Gf~~vs-----------LG~rILRtET 270 (291)
=.+++.|.+ ...++.+...|++.|.+-+. ..|+|||||=
T Consensus 23 i~ai~TGc~~~~~~~~D~~~Lr~LGI~Iv~d~~~~~~~n~LiAPkilRT~K 73 (256)
T 3t7k_A 23 LKAVCTGCFHDGFNEVDIEILNQLGIKIFDNIKETDKLNCIFAPKILRTEK 73 (256)
T ss_dssp EEEEESSSCSSCCCHHHHHHHHHTTEEECSSCCGGGCCCEEECSSCCCBHH
T ss_pred EEEEecCCcccccCHHHHHHHHHcCeEEEecCcccCCCCEEEcCchhhHHH
Confidence 367889999 89999999999999966542 3699999985
No 58
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=34.84 E-value=28 Score=27.62 Aligned_cols=47 Identities=15% Similarity=0.187 Sum_probs=33.7
Q ss_pred EEEcch-hhhHHHHcccCCCCCEEEEEeCCCCEEEEEEEEeeCCceEE
Q 045537 54 VRVEGD-EFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV 100 (291)
Q Consensus 54 v~L~~~-~~~Hl~kVLRlk~Gd~i~v~dG~g~~~~a~I~~i~k~~~~v 100 (291)
..|+.| ...|=.+-++++.||+|.|+-|...=-.++|..+..+.-.+
T Consensus 29 a~LSkeLR~ky~~r~~~IkkGD~V~Vi~GkdKGk~GkV~~V~~k~~~V 76 (121)
T 3j21_U 29 APLSRELREKYKVRNLPVRVGDKVRIMRGDYKGHEGKVVEVDLKRYRI 76 (121)
T ss_dssp EEBCHHHHHHTCCSEEECCSSSEEEECSSSCSSEEEEEEEEETTTTEE
T ss_pred CcCCHHHHHHhCCcccccccCCEEEEeecCCCCcEeEEEEEEecCCEE
Confidence 456654 45565678999999999999995333369999998654433
No 59
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=34.70 E-value=72 Score=23.22 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=26.5
Q ss_pred ccCCCCCEEEEE-eCCCCEEEEEEEEeeCC-ceEEEe
Q 045537 68 LRLSTNDRVELF-NGKGGLIEGCIQRIDRT-GLDVVA 102 (291)
Q Consensus 68 LRlk~Gd~i~v~-dG~g~~~~a~I~~i~k~-~~~v~i 102 (291)
.-.++||.+.+. ..+|..|+|+|.++..+ .+.|..
T Consensus 26 ~~~~~G~~c~a~~~~d~~wyRA~I~~~~~~~~~~V~f 62 (94)
T 3fdr_A 26 LTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYF 62 (94)
T ss_dssp CCCCTTCEEEEEETTTTEEEEEEEEEECTTSCEEEEE
T ss_pred CCCCCCCEEEEEECCCCeEEEEEEEEECCCCeEEEEE
Confidence 457899998774 46789999999999753 555543
No 60
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=34.67 E-value=62 Score=26.37 Aligned_cols=40 Identities=5% Similarity=-0.023 Sum_probs=33.4
Q ss_pred HcccCCCCCEEEEEeCCCCEEEEEEEEeeCCceEEEeeec
Q 045537 66 KVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALED 105 (291)
Q Consensus 66 kVLRlk~Gd~i~v~dG~g~~~~a~I~~i~k~~~~v~i~~~ 105 (291)
....+++|+.+.+-+.+|....++|++++...+++-...+
T Consensus 81 ~~~~~~~G~~~~~~~~~G~~~~~~V~~v~~~~v~vD~NHP 120 (158)
T 3cgm_A 81 EDAEVVPGAQFYAQDMEGNPMPLTVVAVEGEEVTVDFNHP 120 (158)
T ss_dssp TTSCCCTTCEEEEEETTTEEEEEEEEEEETTEEEEECSCT
T ss_pred CCCCCccCCEEEEECCCCCEEEEEEEEECCCEEEEeCCcc
Confidence 3467999999999888888889999999999887755443
No 61
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=34.25 E-value=12 Score=33.76 Aligned_cols=121 Identities=14% Similarity=0.164 Sum_probs=66.7
Q ss_pred HHHHHHHHhcCccEEEEeecccccccccccccccccccchhhchhchhhhhcCCCCcceeEcCCCCHhhhccccCCCceE
Q 045537 131 DWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLLPLVSQSKLA 210 (291)
Q Consensus 131 d~iiekatELGV~~I~P~~se~~~RS~~~~~~k~eRw~~~~kIi~~~eA~kQs~r~~lP~I~~p~~l~~~l~~~~~~~~~ 210 (291)
.+-+..+-+.|++.|....+. .+ .+.++ .. .+.++.-|-..+.+++....++.++.. +.++.
T Consensus 132 ~~qi~ea~~~GAD~VlLi~a~---L~-------~~~l~---~l---~~~a~~lGl~~lvevh~~eEl~~A~~~--ga~iI 193 (272)
T 3tsm_A 132 PYQVYEARSWGADCILIIMAS---VD-------DDLAK---EL---EDTAFALGMDALIEVHDEAEMERALKL--SSRLL 193 (272)
T ss_dssp THHHHHHHHTTCSEEEEETTT---SC-------HHHHH---HH---HHHHHHTTCEEEEEECSHHHHHHHTTS--CCSEE
T ss_pred HHHHHHHHHcCCCEEEEcccc---cC-------HHHHH---HH---HHHHHHcCCeEEEEeCCHHHHHHHHhc--CCCEE
Confidence 346777889999998877666 21 12233 22 234444455555555543333333321 22322
Q ss_pred EEEeCCCC----Chh--hhhccCCCCCceEEEEcCCCCC-CHHHHHHHHHcCCeEEecCCCccccchHH
Q 045537 211 FVAIAEAT----PLV--TALSSSRNESSGLIIVGPEGDF-TEKEVNKIVEAGATAVGLGPHRLRVETAT 272 (291)
Q Consensus 211 lv~~~~~~----~~~--~~l~~~~~~~~i~lvIGPEGGf-s~~Ei~~l~~~Gf~~vsLG~rILRtETAa 272 (291)
=+-..+-. .+. ..+... .+..+.++ .|||. |++++..+.+.|+..|-.|.-++|++--.
T Consensus 194 Ginnr~l~t~~~dl~~~~~L~~~-ip~~~~vI--aesGI~t~edv~~l~~~Ga~gvLVG~almr~~d~~ 259 (272)
T 3tsm_A 194 GVNNRNLRSFEVNLAVSERLAKM-APSDRLLV--GESGIFTHEDCLRLEKSGIGTFLIGESLMRQHDVA 259 (272)
T ss_dssp EEECBCTTTCCBCTHHHHHHHHH-SCTTSEEE--EESSCCSHHHHHHHHTTTCCEEEECHHHHTSSCHH
T ss_pred EECCCCCccCCCChHHHHHHHHh-CCCCCcEE--EECCCCCHHHHHHHHHcCCCEEEEcHHHcCCcCHH
Confidence 22211111 111 011111 11223222 48998 89999999999999999999999998643
No 62
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=33.51 E-value=28 Score=27.90 Aligned_cols=46 Identities=24% Similarity=0.294 Sum_probs=34.3
Q ss_pred EEEEcch-hhhHHHHcccCCCCCEEEEEeCC--CCEEEEEEEEeeCCceEE
Q 045537 53 IVRVEGD-EFWHMTKVLRLSTNDRVELFNGK--GGLIEGCIQRIDRTGLDV 100 (291)
Q Consensus 53 ~v~L~~~-~~~Hl~kVLRlk~Gd~i~v~dG~--g~~~~a~I~~i~k~~~~v 100 (291)
...|+.| ...|=.+-|+++.||+|.|+-|. |. .++|+.+..+.-.+
T Consensus 32 sa~LSkeLr~ky~vrs~~IkkgD~V~Vi~GkdKGk--~GkV~~V~~kk~~V 80 (127)
T 3u5e_Y 32 SAPLSKELRAQYGIKALPIRRDDEVLVVRGSKKGQ--EGKISSVYRLKFAV 80 (127)
T ss_dssp EEEBCHHHHHHHTCCEEECCTTCEEEECSSTTTTC--EEEEEEEEGGGTEE
T ss_pred eCcCCHHHHHHhCcCcccccCCCEEEEeecCCCCc--cceEEEEECCCCEE
Confidence 3556654 56676789999999999999884 55 69999988654333
No 63
>4drs_A Pyruvate kinase; glycolysis, allosteric EN transferase; 2.50A {Cryptosporidium parvum} PDB: 3ma8_A*
Probab=33.19 E-value=14 Score=36.57 Aligned_cols=72 Identities=10% Similarity=0.088 Sum_probs=42.6
Q ss_pred CCCCCEEEEEeCCCCEEEEEEEEeeCCceEEEeeecccccCCCCccceEE-EEeeccC-CCc-HHHHHHHHHhcCccEEE
Q 045537 70 LSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVF-AAFGTLK-GGR-ADWLVEKCTELGAQSVT 146 (291)
Q Consensus 70 lk~Gd~i~v~dG~g~~~~a~I~~i~k~~~~v~i~~~~~~~~~~~~~i~l~-la~~l~K-~~r-~d~iiekatELGV~~I~ 146 (291)
+++||.|.+-|| ....+|.+++++.+.+++...-.... ...+++- ..+.+|- .++ .+.+++.+.|.||+-|-
T Consensus 160 v~~Gd~IlidDG---~i~l~V~~v~~~~i~~~V~~gG~L~~--~KgvNlP~~~l~lp~lTekD~~D~l~fa~~~~vD~ia 234 (526)
T 4drs_A 160 VQIGSTVLIADG---SLSTQVLEIGDDFIVCKVLNSVTIGE--RKNMNLPGCKVHLPIIGDKDRHDIVDFALKYNLDFIA 234 (526)
T ss_dssp CCTTCEEEETTT---TEEEEEEEECSSEEEEECCSCCEECS--SCBEECTTCCCCCCSSCHHHHHHHHHTTTTTTCSEEE
T ss_pred hcCCCEEEEeCC---CceEEEEEEeCCeEEEEeccCccccc--cccccCCCcccCcccccchhHHHHHHHHHHhccCeee
Confidence 789999988554 34788999999988887654321111 1111100 0001121 122 34578899999999886
No 64
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=32.70 E-value=31 Score=24.93 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=21.1
Q ss_pred cCCCCCEEEEEeCC---CCEEEEEEEEee
Q 045537 69 RLSTNDRVELFNGK---GGLIEGCIQRID 94 (291)
Q Consensus 69 Rlk~Gd~i~v~dG~---g~~~~a~I~~i~ 94 (291)
-..+|+.|.++.++ |..|.|+|.++.
T Consensus 5 ~~~vGekV~~~~~d~k~~~~y~AkIl~i~ 33 (76)
T 2lcc_A 5 PCLTGTKVKVKYGRGKTQKIYEASIKSTE 33 (76)
T ss_dssp CSSTTCEEEEEEEETTEEEEEEEEEEEEE
T ss_pred ccCCCCEEEEEeCCCCCCCEEEEEEEEEE
Confidence 36799999999875 477999998764
No 65
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=32.70 E-value=28 Score=28.49 Aligned_cols=36 Identities=14% Similarity=0.275 Sum_probs=25.9
Q ss_pred HHcccCCCCCEEEEEeCCCCEEE-EEEEEeeCCceEE
Q 045537 65 TKVLRLSTNDRVELFNGKGGLIE-GCIQRIDRTGLDV 100 (291)
Q Consensus 65 ~kVLRlk~Gd~i~v~dG~g~~~~-a~I~~i~k~~~~v 100 (291)
.+-++++.||.|.|+-|...=-. ++|..+..+.-.+
T Consensus 44 vr~~~IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~~~V 80 (145)
T 2zkr_t 44 VRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVI 80 (145)
T ss_dssp C-CCBCCTTCEEEECSSTTTTCCSEEEEEEETTTTEE
T ss_pred ccccccCCCCEEEEeecCCCCcceeEEEEEECCCCEE
Confidence 45689999999999999532236 8899887554443
No 66
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=31.45 E-value=45 Score=29.37 Aligned_cols=132 Identities=16% Similarity=0.190 Sum_probs=73.2
Q ss_pred ccceEEEEeeccCCCcHHHHHHHHHhcCccEEEEeecccccccccccccccccccchhhchhchhhhhcCCCCcceeEcC
Q 045537 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNP 193 (291)
Q Consensus 114 ~~i~l~la~~l~K~~r~d~iiekatELGV~~I~P~~se~~~RS~~~~~~k~eRw~~~~kIi~~~eA~kQs~r~~lP~I~~ 193 (291)
.++.+.+.. -.+ +..++.+.+.|++.|..-... .. ... +.+ +.+++.|--.--.+.+
T Consensus 87 ~~ldvHLmv--~~p---~~~i~~~~~aGAd~itvH~Ea---------~~---~~~---~~i---~~ir~~G~k~Gvalnp 143 (246)
T 3inp_A 87 AGMDVHLMV--KPV---DALIESFAKAGATSIVFHPEA---------SE---HID---RSL---QLIKSFGIQAGLALNP 143 (246)
T ss_dssp SCEEEEEEC--SSC---HHHHHHHHHHTCSEEEECGGG---------CS---CHH---HHH---HHHHTTTSEEEEEECT
T ss_pred CeEEEEEee--CCH---HHHHHHHHHcCCCEEEEcccc---------ch---hHH---HHH---HHHHHcCCeEEEEecC
Confidence 345565542 233 346899999999998754322 11 122 333 3334444333335666
Q ss_pred CCCHhhhccccCCCceEEEEe--CC--CCCh----h---hhhccC--CCCCceEEEEcCCCCCCHHHHHHHHHcCCeEEe
Q 045537 194 PMKIDGLLPLVSQSKLAFVAI--AE--ATPL----V---TALSSS--RNESSGLIIVGPEGDFTEKEVNKIVEAGATAVG 260 (291)
Q Consensus 194 p~~l~~~l~~~~~~~~~lv~~--~~--~~~~----~---~~l~~~--~~~~~i~lvIGPEGGfs~~Ei~~l~~~Gf~~vs 260 (291)
..+++.+...+..-+..++.. +. +... . ..+.+. ..... +.|---||.+++-+..+.++|+..+-
T Consensus 144 ~Tp~e~l~~~l~~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~--~~I~VDGGI~~~ti~~~~~aGAD~~V 221 (246)
T 3inp_A 144 ATGIDCLKYVESNIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRD--ILLEIDGGVNPYNIAEIAVCGVNAFV 221 (246)
T ss_dssp TCCSGGGTTTGGGCSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSC--CEEEEESSCCTTTHHHHHTTTCCEEE
T ss_pred CCCHHHHHHHHhcCCEEEEeeecCCCCCcccchHHHHHHHHHHHHHHhcCCC--eeEEEECCcCHHHHHHHHHcCCCEEE
Confidence 666655444343445555443 22 1111 1 111110 00112 33445699999999999999999999
Q ss_pred cCCCccccch
Q 045537 261 LGPHRLRVET 270 (291)
Q Consensus 261 LG~rILRtET 270 (291)
.|+-|.+++-
T Consensus 222 ~GSaIf~a~d 231 (246)
T 3inp_A 222 AGSAIFNSDS 231 (246)
T ss_dssp ESHHHHTSSC
T ss_pred EehHHhCCCC
Confidence 9999998763
No 67
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=31.34 E-value=33 Score=26.77 Aligned_cols=34 Identities=18% Similarity=0.146 Sum_probs=24.8
Q ss_pred cccCCCCCEEEEEeCCCCEEEEEEEEeeCCceEE
Q 045537 67 VLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDV 100 (291)
Q Consensus 67 VLRlk~Gd~i~v~dG~g~~~~a~I~~i~k~~~~v 100 (291)
-++++.||.|.|+-|...=-.++|.++..+.-.+
T Consensus 4 k~~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~V 37 (110)
T 3v2d_Y 4 KMHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAV 37 (110)
T ss_dssp CCSCCTTSEEEECSSTTTTCEEEEEEEEGGGTEE
T ss_pred ccccCCCCEEEEeEcCCCCeEeEEEEEECCCCEE
Confidence 3689999999999994322368999987654333
No 68
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=31.14 E-value=57 Score=25.02 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=21.7
Q ss_pred cCCCCCEEEEEeCCCCEEEEEEEEee
Q 045537 69 RLSTNDRVELFNGKGGLIEGCIQRID 94 (291)
Q Consensus 69 Rlk~Gd~i~v~dG~g~~~~a~I~~i~ 94 (291)
...+|+.|.++.+ |..|.|+|.++.
T Consensus 22 ~f~vGekVl~~~~-~~~YeAkIl~v~ 46 (102)
T 2f5k_A 22 KFQEGERVLCFHG-PLLYEAKCVKVA 46 (102)
T ss_dssp SCCTTCEEEEESS-SSEEEEEEEEEE
T ss_pred ccCCCCEEEEEEC-CEEEEEEEEEEE
Confidence 3679999999995 899999999875
No 69
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=30.86 E-value=24 Score=30.65 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=31.6
Q ss_pred CCCCC-CHHHHHHHHHcCCeEEecCCCccccchHHHHH
Q 045537 239 PEGDF-TEKEVNKIVEAGATAVGLGPHRLRVETATIAL 275 (291)
Q Consensus 239 PEGGf-s~~Ei~~l~~~Gf~~vsLG~rILRtETAai~a 275 (291)
.|||. |++.+..+.+.|+..|-.|..+.|.+.++-..
T Consensus 186 A~GGI~t~~d~~~~~~~GadgV~VGsal~~p~~~~~~~ 223 (232)
T 3igs_A 186 AEGRYNSPALAAEAIRYGAWAVTVGSAITRLEHICGWY 223 (232)
T ss_dssp EESCCCSHHHHHHHHHTTCSEEEECHHHHCHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHcCCCEEEEehHhcCHHHHHHHH
Confidence 78998 69999999999999999999999976654433
No 70
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=30.42 E-value=61 Score=25.85 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=26.5
Q ss_pred HHHHcccCCCCCEEEEEeC-CCCEEEEEEEEeeC
Q 045537 63 HMTKVLRLSTNDRVELFNG-KGGLIEGCIQRIDR 95 (291)
Q Consensus 63 Hl~kVLRlk~Gd~i~v~dG-~g~~~~a~I~~i~k 95 (291)
..+..-.+++||.|.+.+| +|.....+|++++.
T Consensus 85 ~~v~A~~l~~GD~v~~~~~~~~~~~~~~V~~v~~ 118 (145)
T 1at0_A 85 TFVFADRIEEKNQVLVRDVETGELRPQRVVKVGS 118 (145)
T ss_dssp EEEEGGGCCTTCEEEEECTTTCCEEEEEEEEEEE
T ss_pred EEEEHHHCcCCCEEEEecCCCCCEEEEEEEEEEE
Confidence 3457778999999999998 67777788887764
No 71
>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI038; APC63004, methylase family protein, haemophilus influenzae R structural genomics; 2.01A {Haemophilus influenzae}
Probab=30.30 E-value=29 Score=30.58 Aligned_cols=109 Identities=12% Similarity=0.053 Sum_probs=60.6
Q ss_pred ceEEEEeeccCCCcHHHHHHHHHhcCccEEEEeecccccccccccccccccccchhhchhchhhhhcCCC-CcceeEcCC
Q 045537 116 WNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQR-LHEMVLNPP 194 (291)
Q Consensus 116 i~l~la~~l~K~~r~d~iiekatELGV~~I~P~~se~~~RS~~~~~~k~eRw~~~~kIi~~~eA~kQs~r-~~lP~I~~p 194 (291)
+.|+| ..+-.+..+--+++-|.-.|++.++.+.. + . +. .+.+ . ++ +|- .++|.+...
T Consensus 8 l~vVL-~~~~dP~NiGai~Rta~a~G~~~l~lv~p----~--~--------~~--~~a~--r-~A--~GA~~~l~~~~~~ 65 (244)
T 3ilk_A 8 IRIVL-IETSHSGNIGSAARAMKTMGLTQLCLVSP----K--S--------VD--EQSY--A-LS--AGAENIVKNARVV 65 (244)
T ss_dssp EEEEE-ESCCSHHHHHHHHHHHHHHTCCEEEEESC----S--C--------CS--HHHH--H-TT--TTCHHHHHHCEEE
T ss_pred cEEEE-ECCCCcChHHHHHHHHHHhCCCEEEEECC----C--C--------CC--HHHH--H-Hc--CChhheeceeEEe
Confidence 34443 34556788999999999999999986532 2 0 11 0111 1 11 121 234433333
Q ss_pred CCHhhhccccCCCceEEEEeCCCCChh----------hhhccCCCCCceEEEEcCCC-CCCHHHHHHH
Q 045537 195 MKIDGLLPLVSQSKLAFVAIAEATPLV----------TALSSSRNESSGLIIVGPEG-DFTEKEVNKI 251 (291)
Q Consensus 195 ~~l~~~l~~~~~~~~~lv~~~~~~~~~----------~~l~~~~~~~~i~lvIGPEG-Gfs~~Ei~~l 251 (291)
.+++++++.+ +..+.......... ..+.. ..+++++++|.|| |+|+++++..
T Consensus 66 ~~l~eal~~~---~~vvatt~~~~~~~~~~~~p~~~~~~~~~--~~~~~aLVfG~E~~GLs~e~l~~~ 128 (244)
T 3ilk_A 66 DSFDEAVDDC---SLVIGTSARLRHLQNTLIEPRECAEKVVA--YKGKIAIVFGRERIGLTNEELLKC 128 (244)
T ss_dssp SSHHHHTTTC---SEEEEECCCCGGGTTTEECHHHHHHHHHH--CSSCEEEEECBTTTBCCHHHHHTC
T ss_pred CCHHHHHHhC---CeEEEEccCCCCCCcccCCHHHHHHHHhh--cCCCEEEEECCCCCCCCHHHHHhC
Confidence 4788887654 23232222221110 00111 1468999999996 9999998874
No 72
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=29.66 E-value=18 Score=32.43 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=29.8
Q ss_pred CCCCC-HHHHHHHHHcCCeEEecCCCccccchH
Q 045537 240 EGDFT-EKEVNKIVEAGATAVGLGPHRLRVETA 271 (291)
Q Consensus 240 EGGfs-~~Ei~~l~~~Gf~~vsLG~rILRtETA 271 (291)
|||.+ ++.+..+.+.|+..|-.|..++|++--
T Consensus 219 egGI~t~edv~~l~~~GadgvlVGsal~~a~dp 251 (272)
T 3qja_A 219 ESGVRGTADLLAYAGAGADAVLVGEGLVTSGDP 251 (272)
T ss_dssp ESCCCSHHHHHHHHHTTCSEEEECHHHHTCSCH
T ss_pred ECCCCCHHHHHHHHHcCCCEEEEcHHHhCCCCH
Confidence 99998 999999999999999999999998863
No 73
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=28.92 E-value=90 Score=23.22 Aligned_cols=33 Identities=12% Similarity=0.205 Sum_probs=28.5
Q ss_pred CCCEEEEEeCCCCEEEEEEEEeeCCceEEEeee
Q 045537 72 TNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE 104 (291)
Q Consensus 72 ~Gd~i~v~dG~g~~~~a~I~~i~k~~~~v~i~~ 104 (291)
.|-+|.|.-.+|..|.+.+..++..+..+.+..
T Consensus 16 i~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n 48 (86)
T 1y96_A 16 IYKEVRVTASEKNEYKGWVLTTDPVSANIVLVN 48 (86)
T ss_dssp TTCEEEEEETTTEEEEEEEEEECTTTCCEEEEE
T ss_pred cCCEEEEEEcCCCEEEEEEEEECCCceEEEEee
Confidence 578999999999999999999998877776654
No 74
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=28.38 E-value=27 Score=30.22 Aligned_cols=33 Identities=33% Similarity=0.452 Sum_probs=29.5
Q ss_pred CCCCC-CHHHHHHHHHcCCeEEecCCCccccchH
Q 045537 239 PEGDF-TEKEVNKIVEAGATAVGLGPHRLRVETA 271 (291)
Q Consensus 239 PEGGf-s~~Ei~~l~~~Gf~~vsLG~rILRtETA 271 (291)
.|||. |++.+..+.+.|+..|-.|..+.|.+-.
T Consensus 186 A~GGI~t~~d~~~~~~~GadgV~VGsai~~p~~~ 219 (229)
T 3q58_A 186 AEGRYNTPALAANAIEHGAWAVTVGSAITRIEHI 219 (229)
T ss_dssp EESSCCSHHHHHHHHHTTCSEEEECHHHHCHHHH
T ss_pred EECCCCCHHHHHHHHHcCCCEEEEchHhcChHHH
Confidence 78999 6999999999999999999999997644
No 75
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=28.30 E-value=76 Score=23.78 Aligned_cols=27 Identities=7% Similarity=-0.136 Sum_probs=22.8
Q ss_pred ccCCCCCEEEEEeCCCCEEEEEEEEeeC
Q 045537 68 LRLSTNDRVELFNGKGGLIEGCIQRIDR 95 (291)
Q Consensus 68 LRlk~Gd~i~v~dG~g~~~~a~I~~i~k 95 (291)
..+.+|+.+.++. +|..|.|+|.++..
T Consensus 22 ~~~~vG~kv~v~~-~~~~y~AkIl~ir~ 48 (92)
T 2ro0_A 22 DDIIIKCQCWVQK-NDEERLAEILSINT 48 (92)
T ss_dssp TSCCTTCEEEEEE-TTEEEEEEEEEEEC
T ss_pred ccccCCCEEEEEE-CCEEEEEEEEEEEE
Confidence 4578999999997 58999999998764
No 76
>2pn0_A Prokaryotic transcription elongation factor GREA/GREB; structural genomics, APC6349, PSI-2, protein structure initiative; HET: MSE; 1.70A {Nitrosomonas europaea}
Probab=28.04 E-value=66 Score=25.70 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=24.6
Q ss_pred cccCCCCCEEEEEeCCCCEEEEEEEEee
Q 045537 67 VLRLSTNDRVELFNGKGGLIEGCIQRID 94 (291)
Q Consensus 67 VLRlk~Gd~i~v~dG~g~~~~a~I~~i~ 94 (291)
.|-.++||.|.+-.++|..+..+|.+|.
T Consensus 101 LlGk~vGD~v~v~~P~G~~~~~~I~~I~ 128 (141)
T 2pn0_A 101 LLGLAQGDEIEWPKPGGGVLRVRIVEVT 128 (141)
T ss_dssp HTTCBTTCEEEEECTTSSEEEEEEEEEE
T ss_pred HcCCCCCCEEEEEcCCCCEEEEEEEEEE
Confidence 5889999999999888878899998876
No 77
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=27.36 E-value=52 Score=23.44 Aligned_cols=30 Identities=20% Similarity=0.152 Sum_probs=23.0
Q ss_pred ccCCCCCEEEE-EeCCCCEEEEEEEEeeCCc
Q 045537 68 LRLSTNDRVEL-FNGKGGLIEGCIQRIDRTG 97 (291)
Q Consensus 68 LRlk~Gd~i~v-~dG~g~~~~a~I~~i~k~~ 97 (291)
.+..+||.|.- .-|+...|.|+|++++.+.
T Consensus 11 ~~f~vgd~VmaRW~Gd~~yYparItSits~~ 41 (68)
T 2dig_A 11 RKFADGEVVRGRWPGSSLYYEVEILSHDSTS 41 (68)
T ss_dssp CSSCSSCEEEEECTTTCCEEEEEEEEEETTT
T ss_pred eEeecCCEEEEEccCCccceEEEEEEeccCC
Confidence 46788999853 2278899999999998543
No 78
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=27.15 E-value=81 Score=24.56 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=22.6
Q ss_pred ccCCCCCEEEEEeCC----CCEEEEEEEEee
Q 045537 68 LRLSTNDRVELFNGK----GGLIEGCIQRID 94 (291)
Q Consensus 68 LRlk~Gd~i~v~dG~----g~~~~a~I~~i~ 94 (291)
-...+||.|.++-|+ +..|.|+|+++.
T Consensus 18 ~~F~~GEkVLc~hgd~~k~~~lYeAKIl~v~ 48 (110)
T 3m9p_A 18 FKFHSGEKVLCFEPDPTKARVLYDAKIVDVI 48 (110)
T ss_dssp CCSCTTCEEEEECSCTTSCCCEEEEEEEEEE
T ss_pred CcccCCCEEEEEcCCCCCCCCceeeEEEEEE
Confidence 457899999999886 689999998764
No 79
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=26.56 E-value=71 Score=24.14 Aligned_cols=27 Identities=7% Similarity=-0.136 Sum_probs=22.8
Q ss_pred ccCCCCCEEEEEeCCCCEEEEEEEEeeC
Q 045537 68 LRLSTNDRVELFNGKGGLIEGCIQRIDR 95 (291)
Q Consensus 68 LRlk~Gd~i~v~dG~g~~~~a~I~~i~k 95 (291)
..+.+|+.+.++. +|..|.|+|.++..
T Consensus 24 ~~~~vG~kv~v~~-~~~~yeAeIl~ir~ 50 (94)
T 2rnz_A 24 DDIIIKCQCWVQK-NDEERLAEILSINT 50 (94)
T ss_dssp GGCCTTEEEEEEC-SSCEEEEEEEEEEC
T ss_pred ccccCCCEEEEEE-CCEEEEEEEEEEEE
Confidence 4578999999987 68999999998764
No 80
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=26.07 E-value=21 Score=29.79 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=28.7
Q ss_pred cCCCCCCHHHHHHHHHcCCeEEecCCCcccc
Q 045537 238 GPEGDFTEKEVNKIVEAGATAVGLGPHRLRV 268 (291)
Q Consensus 238 GPEGGfs~~Ei~~l~~~Gf~~vsLG~rILRt 268 (291)
=+.||.+.+.+..+.+.|+..|..|+.++++
T Consensus 152 ia~GGI~~~~i~~~~~~Ga~gv~vGsai~~~ 182 (212)
T 2v82_A 152 FAVGGVTPENLAQWIDAGCAGAGLGSDLYRA 182 (212)
T ss_dssp EEESSCCTTTHHHHHHHTCSEEEECTTTCCT
T ss_pred EEeCCCCHHHHHHHHHcCCCEEEEChHHhCC
Confidence 3579999999999999999999999999997
No 81
>3bmb_A Regulator of nucleoside diphosphate kinase; RNA polymerase, elongation factor, anti-GRE factor, RNA binding protein; 1.91A {Escherichia coli}
Probab=26.06 E-value=72 Score=25.21 Aligned_cols=29 Identities=14% Similarity=0.097 Sum_probs=24.4
Q ss_pred HcccCCCCCEEEEEeCCCCEEEEEEEEee
Q 045537 66 KVLRLSTNDRVELFNGKGGLIEGCIQRID 94 (291)
Q Consensus 66 kVLRlk~Gd~i~v~dG~g~~~~a~I~~i~ 94 (291)
-.|-.++||.|.+-.++|..+..+|.+|.
T Consensus 97 ALlGk~~GD~v~v~~p~G~~~~~~I~~I~ 125 (136)
T 3bmb_A 97 ALLGLRVGDSIHWELPGGVATHLEVLELE 125 (136)
T ss_dssp HHTTCBTTCEEEEEETTTEEEEEEEEEEE
T ss_pred HHcCCCCCCEEEEEcCCCCEEEEEEEEEE
Confidence 35789999999999988867888998775
No 82
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=26.05 E-value=35 Score=28.14 Aligned_cols=46 Identities=15% Similarity=0.297 Sum_probs=34.4
Q ss_pred EEEEcch-hhhHHHHcccCCCCCEEEEEeCC--CCEEEEEEEEeeCCceEE
Q 045537 53 IVRVEGD-EFWHMTKVLRLSTNDRVELFNGK--GGLIEGCIQRIDRTGLDV 100 (291)
Q Consensus 53 ~v~L~~~-~~~Hl~kVLRlk~Gd~i~v~dG~--g~~~~a~I~~i~k~~~~v 100 (291)
...|+.| ...|=++-|+++.||+|.|+-|. |. .++|+.+..+.-.+
T Consensus 31 sa~LSkELR~ky~vRs~~IkKGD~V~Vi~GkdKGk--~GkVl~V~~kk~~V 79 (150)
T 3iz5_Y 31 SAALSTELRHKYNVRSIPIRKDDEVQVVRGSYKGR--EGKVVQVYRRRWVI 79 (150)
T ss_dssp EEEECHHHHTTTTCSEEECCSSSEEEECSSTTTTC--EEEEEEEETTTTEE
T ss_pred eCcCCHHHHHHhCCcccccCCCCEEEEeecCCCCc--cceEEEEEcCCCEE
Confidence 3456654 55676788999999999999984 55 69999998764443
No 83
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=25.94 E-value=96 Score=26.96 Aligned_cols=35 Identities=11% Similarity=0.071 Sum_probs=31.2
Q ss_pred EEEcCCCCCCHHHHHHHHH--cCCeEEecCCCccccc
Q 045537 235 IIVGPEGDFTEKEVNKIVE--AGATAVGLGPHRLRVE 269 (291)
Q Consensus 235 lvIGPEGGfs~~Ei~~l~~--~Gf~~vsLG~rILRtE 269 (291)
+.|.--||.+++.+..+.+ +|+..+-.|+-|.+++
T Consensus 188 ~~I~vdGGI~~~~~~~~~~~~aGad~~VvGSaIf~~d 224 (237)
T 3cu2_A 188 KLINIDGSMTLELAKYFKQGTHQIDWLVSGSALFSGE 224 (237)
T ss_dssp CEEEEESSCCHHHHHHHHHSSSCCCCEEECGGGGSSC
T ss_pred ceEEEECCcCHHHHHHHHHhCCCCcEEEEeeHHhCCC
Confidence 3466689999999999999 9999999999999974
No 84
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=25.50 E-value=39 Score=28.85 Aligned_cols=111 Identities=6% Similarity=0.014 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcCccEEEEeecccccccccc-cccccccccchhhchhchhhhhcCCC-CcceeEcCCCCHhhhccccC--
Q 045537 130 ADWLVEKCTELGAQSVTPLLTELHLQSRKI-GDNGFLSCNFYYGFIANSAFVYGGQR-LHEMVLNPPMKIDGLLPLVS-- 205 (291)
Q Consensus 130 ~d~iiekatELGV~~I~P~~se~~~RS~~~-~~~k~eRw~~~~kIi~~~eA~kQs~r-~~lP~I~~p~~l~~~l~~~~-- 205 (291)
.-.+-+-+--.|+++++.+.-. ..+.. ...-...|. .-. -|.....| ..+-.+....+|+++++.+.
T Consensus 31 ihdiARamkt~Gl~~l~LV~P~---~~~~~~a~~~~~~w~---~~~---Ga~~np~r~d~L~~a~vv~sL~eAl~~~~~~ 101 (192)
T 3dcm_X 31 VHDIARTARTYNLKGYYIVTNL---RAQQDMVSKMLKFWR---EGF---GSRYNPSRAESLKLVKLKSYLEDVLEDIESV 101 (192)
T ss_dssp HHHHHHHHHHTTCSEEEEECCC---HHHHHHHHHHHHHHH---TSG---GGGTCSSSHHHHTTEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCceEEEECCc---cccHHHHHHHHHhhh---ccc---CcccCcCHHHHhccCeEECCHHHHHHHHHhh
Confidence 6789999999999999988765 32211 011112232 211 01111111 11122233447999887553
Q ss_pred -CCceEEEEeCCC---CC--hh---hhhccCCCCCceEEEEcCCCCCCHHHHHHH
Q 045537 206 -QSKLAFVAIAEA---TP--LV---TALSSSRNESSGLIIVGPEGDFTEKEVNKI 251 (291)
Q Consensus 206 -~~~~~lv~~~~~---~~--~~---~~l~~~~~~~~i~lvIGPEGGfs~~Ei~~l 251 (291)
+....+++-... .. .. ..+.. ..++++++.|.+-|++++|++..
T Consensus 102 ~g~~p~vvaTsAr~~~~~i~~~el~~~i~~--~~~pvalvFG~~~GLtneel~~c 154 (192)
T 3dcm_X 102 EGERPLIFFTSAKKRENDISFEEGRRIIIE--TEKPVLILLGTGWGLPDEILEIS 154 (192)
T ss_dssp HSSCCEEEECCSSCCSSCBCHHHHHHHHHH--CCSCEEEEECCTTCCCHHHHTTC
T ss_pred cCCccEEEEeCCCcCCCCCCHHHHHHHHHh--CCCCEEEEECCCCCCCHHHHHhc
Confidence 222344543211 11 11 11211 35689999999999999998764
No 85
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=25.42 E-value=94 Score=23.77 Aligned_cols=25 Identities=8% Similarity=0.037 Sum_probs=21.7
Q ss_pred CCCCCEEEEEeC----CCCEEEEEEEEee
Q 045537 70 LSTNDRVELFNG----KGGLIEGCIQRID 94 (291)
Q Consensus 70 lk~Gd~i~v~dG----~g~~~~a~I~~i~ 94 (291)
..+||.|.++.+ .+..|.|+|.++.
T Consensus 20 f~~GEkVLc~h~d~~kg~~lYeAKIl~v~ 48 (101)
T 3m9q_A 20 FHKGEIVLCYEPDKSKARVLYTSKVLNVF 48 (101)
T ss_dssp CCTTCEEEEECCCTTSCCCEEEEEEEEEE
T ss_pred ccCCCEEEEEecCCCCCCcceEeEEEEEE
Confidence 689999999997 4789999998874
No 86
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=25.17 E-value=82 Score=25.99 Aligned_cols=38 Identities=16% Similarity=0.033 Sum_probs=31.3
Q ss_pred cccCCCCCEEEEEeCCCCEEEEEEEEeeCCceEEEeeec
Q 045537 67 VLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALED 105 (291)
Q Consensus 67 VLRlk~Gd~i~v~dG~g~~~~a~I~~i~k~~~~v~i~~~ 105 (291)
...+++|+.+.+-+.+|. ..++|++++...+++-...+
T Consensus 87 ~~~~~~G~~~~~~~~~G~-~~~~V~~v~~~~V~vD~NHP 124 (171)
T 2k8i_A 87 VDELQVGMRFLAETDQGP-VPVEITAVEDDHVVVDGNHM 124 (171)
T ss_dssp SSCCCTTCEEEEEETTEE-EEEEEEEECSSEEEEESCCS
T ss_pred ccCccCCcEEEEECCCCc-EEEEEEEEcCCEEEEeCCCC
Confidence 467999999999888885 78999999999887755443
No 87
>2ln7_A LPXTG-SITE transpeptidase family protein; sortase, sortase family D, enzyme, protein binding; NMR {Bacillus anthracis}
Probab=24.97 E-value=51 Score=26.41 Aligned_cols=40 Identities=20% Similarity=0.088 Sum_probs=28.4
Q ss_pred EEEEcchhhhHHHHcccCCCCCEEEEEeCCCCEEEEEEEEe
Q 045537 53 IVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRI 93 (291)
Q Consensus 53 ~v~L~~~~~~Hl~kVLRlk~Gd~i~v~dG~g~~~~a~I~~i 93 (291)
...|.+-...|..+.-++++||.|.|.+. ++.|..+|.++
T Consensus 59 n~viaGH~~~~F~~L~~l~~GD~i~v~~~-~~~~~Y~V~~~ 98 (147)
T 2ln7_A 59 HTVLSGHRDTVFTDLGQLKEKDTLVLEYD-NKTYTYEIQKI 98 (147)
T ss_dssp EEEEEEECCCCSSHHHHSSTTCEEEEEET-TEEEEEEEEEE
T ss_pred eEEEEcccCChhhhhhcccCCCEEEEEEC-CcEEEEEEEeE
Confidence 44555433345556667899999999885 67889998764
No 88
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=24.31 E-value=71 Score=29.06 Aligned_cols=37 Identities=14% Similarity=0.224 Sum_probs=30.8
Q ss_pred CCCCC-CHHHHHHHHHcCCeEEecCCCccccchHHHHH
Q 045537 239 PEGDF-TEKEVNKIVEAGATAVGLGPHRLRVETATIAL 275 (291)
Q Consensus 239 PEGGf-s~~Ei~~l~~~Gf~~vsLG~rILRtETAai~a 275 (291)
.|||. |+++...+.+.|+..|-+|.-|+|++--...+
T Consensus 205 AnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~A 242 (291)
T 3o07_A 205 AAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLA 242 (291)
T ss_dssp BCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHH
T ss_pred cCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHH
Confidence 58887 89999999999999999999999965433333
No 89
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A
Probab=24.22 E-value=88 Score=20.52 Aligned_cols=24 Identities=8% Similarity=0.208 Sum_probs=19.7
Q ss_pred cccCCCCCEEEEEeCCCCEEEEEE
Q 045537 67 VLRLSTNDRVELFNGKGGLIEGCI 90 (291)
Q Consensus 67 VLRlk~Gd~i~v~dG~g~~~~a~I 90 (291)
=|-++.||.|.|.+.+++-|.++.
T Consensus 22 eLs~~~Gd~i~v~~~~~~Ww~g~~ 45 (62)
T 2iim_A 22 DLGFEKGEQLRILEQSGEWWKAQS 45 (62)
T ss_dssp BCCBCTTCEEEEEECCSSEEEEEE
T ss_pred CcCCCCCCEEEEEEcCCCEEEEEE
Confidence 366899999999998888887764
No 90
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=22.93 E-value=44 Score=21.44 Aligned_cols=13 Identities=15% Similarity=0.368 Sum_probs=10.3
Q ss_pred CCCCHHHHHHHHH
Q 045537 241 GDFTEKEVNKIVE 253 (291)
Q Consensus 241 GGfs~~Ei~~l~~ 253 (291)
-|||++|...+..
T Consensus 15 egfspeelaales 27 (48)
T 1g6u_A 15 EGFSPEELAALES 27 (48)
T ss_dssp TTCSHHHHHHHHH
T ss_pred cCCCHHHHHHHHH
Confidence 4899999987753
No 91
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=22.39 E-value=2.9e+02 Score=23.52 Aligned_cols=129 Identities=21% Similarity=0.188 Sum_probs=70.2
Q ss_pred ccceEEEEeeccCCCcHHHHHHHHHhcCccEEEEeecccccccccccccccccccchhhchhchhhhhcCCCCcceeEcC
Q 045537 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNP 193 (291)
Q Consensus 114 ~~i~l~la~~l~K~~r~d~iiekatELGV~~I~P~~se~~~RS~~~~~~k~eRw~~~~kIi~~~eA~kQs~r~~lP~I~~ 193 (291)
.++.+.+.. -.++ ..++.+.+.|++.|..-. + = ..... +.+ . .+++.|-..--.+.+
T Consensus 65 ~~~dvhLmv--~~p~---~~i~~~~~aGad~itvH~-E---a-----~~~~~------~~i--~-~i~~~G~k~gval~p 121 (228)
T 3ovp_A 65 PFFDMHMMV--SKPE---QWVKPMAVAGANQYTFHL-E---A-----TENPG------ALI--K-DIRENGMKVGLAIKP 121 (228)
T ss_dssp SCEEEEEEC--SCGG---GGHHHHHHHTCSEEEEEG-G---G-----CSCHH------HHH--H-HHHHTTCEEEEEECT
T ss_pred CcEEEEEEe--CCHH---HHHHHHHHcCCCEEEEcc-C---C-----chhHH------HHH--H-HHHHcCCCEEEEEcC
Confidence 345555543 2233 457899999999988543 3 1 11122 233 2 233333322334555
Q ss_pred CCCHhhhccccCCCceEEEEe--CCC--CCh-------hhhhccCCCCCceEEEEcCCCCCCHHHHHHHHHcCCeEEecC
Q 045537 194 PMKIDGLLPLVSQSKLAFVAI--AEA--TPL-------VTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLG 262 (291)
Q Consensus 194 p~~l~~~l~~~~~~~~~lv~~--~~~--~~~-------~~~l~~~~~~~~i~lvIGPEGGfs~~Ei~~l~~~Gf~~vsLG 262 (291)
..+++.+......-+..++.. +.. ... ...+.+. ...+ .|.--||.+++-+..+.++|+..+-.|
T Consensus 122 ~t~~e~l~~~l~~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~--~~~~--~I~VdGGI~~~t~~~~~~aGAd~~VvG 197 (228)
T 3ovp_A 122 GTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQ--FPSL--DIEVDGGVGPDTVHKCAEAGANMIVSG 197 (228)
T ss_dssp TSCGGGTGGGGGGCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHH--CTTC--EEEEESSCSTTTHHHHHHHTCCEEEES
T ss_pred CCCHHHHHHHhccCCeEEEeeecCCCCCcccCHHHHHHHHHHHHh--cCCC--CEEEeCCcCHHHHHHHHHcCCCEEEEe
Confidence 555555433333345544432 221 111 1112111 1122 344569999999999999999999999
Q ss_pred CCccccc
Q 045537 263 PHRLRVE 269 (291)
Q Consensus 263 ~rILRtE 269 (291)
+-|.+++
T Consensus 198 saIf~a~ 204 (228)
T 3ovp_A 198 SAIMRSE 204 (228)
T ss_dssp HHHHTCS
T ss_pred HHHhCCC
Confidence 9999886
No 92
>1y71_A Kinase-associated protein B; structural genomics, midwest CE structural genomics, MCSG, protein structure initiative, PS unknown function; 1.95A {Bacillus cereus} SCOP: b.34.16.1
Probab=22.14 E-value=1.9e+02 Score=23.12 Aligned_cols=36 Identities=17% Similarity=0.067 Sum_probs=29.6
Q ss_pred CCCCCEEEEEeCCCCEEEEEEEEeeCCceEEEeeecc
Q 045537 70 LSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDL 106 (291)
Q Consensus 70 lk~Gd~i~v~dG~g~~~~a~I~~i~k~~~~v~i~~~~ 106 (291)
..+||.|..+-. -+.|.++|++.....+.|++..-+
T Consensus 8 ~~~g~~v~~~yK-TG~YigeI~e~~~~~~lVkVlaVl 43 (130)
T 1y71_A 8 FEIGEIVTGIYK-TGKYIGEVTNSRPGSYVVKVLAVL 43 (130)
T ss_dssp CCTTCEEEEEET-TEEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCccceeEEEEe-cceeEEEEEeecCCeEEEEEEEEe
Confidence 589999999876 458999999999998888776544
No 93
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=22.11 E-value=1.3e+02 Score=19.63 Aligned_cols=29 Identities=10% Similarity=0.156 Sum_probs=19.7
Q ss_pred cEEEEcchhhhHHHHcccCCCCCEEEEEeCCCC
Q 045537 52 GIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGG 84 (291)
Q Consensus 52 ~~v~L~~~~~~Hl~kVLRlk~Gd~i~v~dG~g~ 84 (291)
+.+.|+. .+.+.|-+++||.+.+...+|+
T Consensus 12 gqi~IPk----~ir~~lgi~~Gd~v~i~~~~~~ 40 (53)
T 2l66_A 12 YQVTIPA----KVRQKFQIKEGDLVKVTFDESE 40 (53)
T ss_dssp SCBCCCH----HHHHHSCCCTTCEEEEEECSSS
T ss_pred CEEEeCH----HHHHHcCcCCCCEEEEEEECCE
Confidence 3445553 3566788999999988765454
No 94
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=21.76 E-value=71 Score=24.04 Aligned_cols=34 Identities=15% Similarity=0.063 Sum_probs=25.5
Q ss_pred cCCCCCEEEEEe-CCCCEEEEEEEEeeC-CceEEEe
Q 045537 69 RLSTNDRVELFN-GKGGLIEGCIQRIDR-TGLDVVA 102 (291)
Q Consensus 69 Rlk~Gd~i~v~d-G~g~~~~a~I~~i~k-~~~~v~i 102 (291)
-.++||.+.+.. .+|..|+|+|+++.. +.+.|..
T Consensus 32 ~~~~G~~c~a~~~~d~~wyRA~V~~~~~~~~~~V~f 67 (110)
T 2diq_A 32 TVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYF 67 (110)
T ss_dssp CCCTTCEEEECCTTTCSCEEEEECCCCSSSCEEEEE
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCCCeEEEEE
Confidence 468999987744 578999999999875 5555543
No 95
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=21.66 E-value=53 Score=26.02 Aligned_cols=42 Identities=21% Similarity=0.310 Sum_probs=33.8
Q ss_pred hhHHHHcccCCCCCEEEEEeCCCCEEEEEEEEeeCC--ceEEEee
Q 045537 61 FWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRT--GLDVVAL 103 (291)
Q Consensus 61 ~~Hl~kVLRlk~Gd~i~v~dG~g~~~~a~I~~i~k~--~~~v~i~ 103 (291)
..||-.|.= +.|+.|.|.+|.-+-..|++.+++.+ .+.+++.
T Consensus 63 q~~LETViP-~~g~~V~Iv~G~~rG~~g~L~~id~~~~~~~V~l~ 106 (127)
T 2ckk_A 63 QTHLETVIP-APGKRILVLNGGYRGNEGTLESINEKTFSATIVIE 106 (127)
T ss_dssp GGGEEECCC-CTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEEEC
T ss_pred hHHcEEecC-CCCCEEEEEecccCCcEEEEEEEeCCCcEEEEEEc
Confidence 567877877 79999999999766679999999876 5655554
No 96
>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*
Probab=21.49 E-value=61 Score=28.59 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=29.8
Q ss_pred EcCCCCC-CHHHHHHHHHcCCeEEecCCCccccc
Q 045537 237 VGPEGDF-TEKEVNKIVEAGATAVGLGPHRLRVE 269 (291)
Q Consensus 237 IGPEGGf-s~~Ei~~l~~~Gf~~vsLG~rILRtE 269 (291)
+-..||. +.+.+..+.+.|+..|-+|+.+++++
T Consensus 212 ~~a~GGI~~~e~i~~~~~aGadgvvvGsai~~~~ 245 (297)
T 2zbt_A 212 NFAAGGIATPADAALMMHLGMDGVFVGSGIFKSG 245 (297)
T ss_dssp EEBCSSCCSHHHHHHHHHTTCSEEEECGGGGGSS
T ss_pred EEeeCCCCCHHHHHHHHHcCCCEEEEchHHhCCC
Confidence 3478999 99999999999999999999999874
No 97
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A
Probab=20.93 E-value=1.7e+02 Score=24.04 Aligned_cols=76 Identities=9% Similarity=0.207 Sum_probs=48.4
Q ss_pred ccccCCCceEEEEeCCCCCh-----hhhhcc--CCCCCceEEEEcCCCCCCHHHHHHHHHcCCeEEecCCCccccchHHH
Q 045537 201 LPLVSQSKLAFVAIAEATPL-----VTALSS--SRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273 (291)
Q Consensus 201 l~~~~~~~~~lv~~~~~~~~-----~~~l~~--~~~~~~i~lvIGPEGGfs~~Ei~~l~~~Gf~~vsLG~rILRtETAai 273 (291)
++.+.+.+..+++++.++.+ ...+.. ....+.++++||--=||+++=.+ .+. ..+|||+-.+-=+-|-+
T Consensus 68 l~~i~~~~~vI~LD~~Gk~~sS~~fA~~l~~~~~~g~~~i~FvIGG~~Gl~~~v~~---rA~-~~lSlS~mTfpHqL~Rl 143 (163)
T 4fak_A 68 LAKIKPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQ---RSN-YALSFSKMTFPHQMMRV 143 (163)
T ss_dssp HHTCCTTSEEEEEEEEEEECCHHHHHHHHHHHHHTTCCEEEEEECBTTBCCHHHHH---HCS-EEEESCSSCCCHHHHHH
T ss_pred HHhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCcceEEEEECCCccCHHHHH---hcC-ceEEEecCCCCHHHHHH
Confidence 34444455666777655432 222221 11235799999999999996333 333 57999999998888877
Q ss_pred HHHHHHH
Q 045537 274 ALLATLM 280 (291)
Q Consensus 274 ~ala~l~ 280 (291)
+.+=++.
T Consensus 144 iL~EQlY 150 (163)
T 4fak_A 144 VLIEQVY 150 (163)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776553
No 98
>1t2w_A Sortase; transpeptidase, beta barrel, hydrolase; 1.80A {Staphylococcus aureus} SCOP: b.100.1.1 PDB: 1t2o_A 1ija_A 2kid_A* 1t2p_A
Probab=20.73 E-value=91 Score=24.67 Aligned_cols=31 Identities=13% Similarity=0.091 Sum_probs=24.2
Q ss_pred hHHHHcccCCCCCEEEEEeCCCCEEEEEEEEe
Q 045537 62 WHMTKVLRLSTNDRVELFNGKGGLIEGCIQRI 93 (291)
Q Consensus 62 ~Hl~kVLRlk~Gd~i~v~dG~g~~~~a~I~~i 93 (291)
.+..+.-++++||.|.|.+.+ +.|..+|.++
T Consensus 67 ~~F~~L~~l~~Gd~i~v~~~~-~~~~Y~V~~~ 97 (145)
T 1t2w_A 67 YQFTNLKAAKKGSMVYFKVGN-ETRKYKMTSI 97 (145)
T ss_dssp STTTTGGGCCTTCEEEEEETT-EEEEEEEEEE
T ss_pred cccCChhhCCCCCEEEEEECC-EEEEEEEEEE
Confidence 344455678999999999875 6899999765
No 99
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=20.71 E-value=80 Score=24.17 Aligned_cols=29 Identities=17% Similarity=0.323 Sum_probs=22.6
Q ss_pred ccCCCCCEEEEEeCCCCEEEEEEEEeeCC
Q 045537 68 LRLSTNDRVELFNGKGGLIEGCIQRIDRT 96 (291)
Q Consensus 68 LRlk~Gd~i~v~dG~g~~~~a~I~~i~k~ 96 (291)
.+++.||.|.|+-|...=-.++|.++.++
T Consensus 2 ~~IkkGD~V~Vi~GkdKGk~GkV~~V~~~ 30 (102)
T 3r8s_U 2 AKIRRDDEVIVLTGKDKGKRGKVKNVLSS 30 (102)
T ss_dssp CSSCSSCEEEECSSSSTTCEEEEEEEETT
T ss_pred CCccCCCEEEEeEcCCCCeeeEEEEEEeC
Confidence 47899999999998432236899999876
No 100
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=20.57 E-value=2e+02 Score=22.84 Aligned_cols=33 Identities=12% Similarity=0.207 Sum_probs=25.3
Q ss_pred cCCCCCEEEEEeCC-C----CEEEEEEEEeeCCceEEE
Q 045537 69 RLSTNDRVELFNGK-G----GLIEGCIQRIDRTGLDVV 101 (291)
Q Consensus 69 Rlk~Gd~i~v~dG~-g----~~~~a~I~~i~k~~~~v~ 101 (291)
-..+||.|+++.-. . +-|.|+|..+......++
T Consensus 60 ~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~kg~f~~V~ 97 (128)
T 3h8z_A 60 EITEGDEVEVYSRANEQEPCGWWLARVRMMKGDFYVIE 97 (128)
T ss_dssp CCCTTCEEEEEECC---CCCEEEEEEEEEEETTEEEEE
T ss_pred CCCCCCEEEEEecCCCCCcCccEEEEEEEeeCCEEEEE
Confidence 36899999999864 3 689999999876655444
No 101
>3g66_A Sortase C; pilus, transferase; HET: MES; 1.70A {Streptococcus pneumoniae} PDB: 3g69_A*
Probab=20.44 E-value=87 Score=26.93 Aligned_cols=31 Identities=10% Similarity=0.072 Sum_probs=24.8
Q ss_pred hHHHHcccCCCCCEEEEEeCCCCEEEEEEEEe
Q 045537 62 WHMTKVLRLSTNDRVELFNGKGGLIEGCIQRI 93 (291)
Q Consensus 62 ~Hl~kVLRlk~Gd~i~v~dG~g~~~~a~I~~i 93 (291)
.+..+.-++++||.|.|.+.+| .|..+|.++
T Consensus 121 ~~F~~L~~lk~GD~I~v~~~~~-~~~Y~V~~~ 151 (212)
T 3g66_A 121 ELFSQLDKMKKGDIFYLHVLDQ-VLAYQVDQI 151 (212)
T ss_dssp CTTTTGGGCCTTCEEEEEETTE-EEEEEEEEE
T ss_pred cccccHhhCCcCCEEEEEECCe-EEEEEEeeE
Confidence 3445556889999999999876 999999765
No 102
>3oii_A Essential for mitotic growth 1; EMG1, scnep1, spout, ribosome biogenesis, methyltransferase, processing, ribosomal protein; HET: SAH; 1.85A {Saccharomyces cerevisiae} PDB: 3oij_A* 3oin_A* 2v3j_A 2v3k_A*
Probab=20.38 E-value=2.1e+02 Score=25.39 Aligned_cols=78 Identities=18% Similarity=0.198 Sum_probs=45.6
Q ss_pred CHhhhccccCCCceEEEEeCCCC--ChhhhhccCCCCCceEEEEc--CCC--CCCHHHHHHHHHcCCeEEecCCCccccc
Q 045537 196 KIDGLLPLVSQSKLAFVAIAEAT--PLVTALSSSRNESSGLIIVG--PEG--DFTEKEVNKIVEAGATAVGLGPHRLRVE 269 (291)
Q Consensus 196 ~l~~~l~~~~~~~~~lv~~~~~~--~~~~~l~~~~~~~~i~lvIG--PEG--Gfs~~Ei~~l~~~Gf~~vsLG~rILRtE 269 (291)
++.+++.. ...++.++..+. ...+.........+++++|| |-| .|+++ . .+ ..+|++..-|-+-
T Consensus 167 ~l~d~Lp~---~~~kI~ls~~g~~v~~~~~~~~l~~~~~i~vvVGafahG~~~f~~~---~---~~-e~iSIs~ypLsa~ 236 (253)
T 3oii_A 167 PITDHLPT---KCRKVTLSFDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADE---Y---VD-EKVGLSNYPLSAS 236 (253)
T ss_dssp CGGGTSCS---SEEEEEECTTSCBCCHHHHHHTSCTTCEEEEEEECSSSCCSCTTTT---T---CS-EEEBSCSSCCCHH
T ss_pred CHHHhCCC---CCeEEEEccCCCccCHHHHHHhcccCCCeEEEEeeeCCCCCcccch---h---cc-eeEEEeCCChhHH
Confidence 57777632 234566666553 23333333333467899999 777 57653 1 11 5799999999875
Q ss_pred hHHHHHHHHH-HHcc
Q 045537 270 TATIALLATL-MLCS 283 (291)
Q Consensus 270 TAai~ala~l-~~~~ 283 (291)
+++-..++.+ -.|+
T Consensus 237 ~~c~kic~a~E~~w~ 251 (253)
T 3oii_A 237 VACSKFCHGAEDAWN 251 (253)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhC
Confidence 5544444444 2454
No 103
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=20.14 E-value=30 Score=30.33 Aligned_cols=35 Identities=11% Similarity=0.204 Sum_probs=30.7
Q ss_pred CCCCCCHHHHHHHHHcCCeEEecCCCccccchHHH
Q 045537 239 PEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273 (291)
Q Consensus 239 PEGGfs~~Ei~~l~~~Gf~~vsLG~rILRtETAai 273 (291)
.+||.+++.+..+.+.|+..|..|.-|++++--.-
T Consensus 196 AiGGI~~~ni~~~~~aGa~gvav~sai~~a~dp~~ 230 (243)
T 3o63_A 196 AIGGINAQRLPAVLDAGARRIVVVRAITSADDPRA 230 (243)
T ss_dssp EESSCCTTTHHHHHHTTCCCEEESHHHHTCSSHHH
T ss_pred EecCCCHHHHHHHHHcCCCEEEEeHHHhCCCCHHH
Confidence 34999999999999999999999999999876443
Done!