Query 045537
Match_columns 291
No_of_seqs 176 out of 1170
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 04:48:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045537.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045537hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nxza2 c.116.1.5 (A:74-247) H 100.0 5.6E-47 4.1E-51 326.3 15.3 163 115-287 4-172 (174)
2 d1vhka2 c.116.1.5 (A:74-253) H 100.0 7.6E-47 5.5E-51 327.1 16.0 164 114-285 4-178 (180)
3 d1v6za2 c.116.1.5 (A:67-228) H 100.0 1.8E-45 1.3E-49 313.7 14.2 153 114-281 3-158 (162)
4 d1nxza1 b.122.1.2 (A:2-73) Hyp 99.7 7.7E-17 5.6E-21 118.2 8.2 63 43-105 1-68 (72)
5 d1vhka1 b.122.1.2 (A:2-73) Hyp 99.6 1.7E-15 1.2E-19 111.0 8.7 62 45-106 1-70 (72)
6 d1v6za1 b.122.1.2 (A:4-66) Hyp 97.5 5.9E-05 4.3E-09 50.3 4.5 57 46-104 2-58 (63)
7 d2qwva1 c.116.1.7 (A:5-205) Un 95.1 0.0053 3.9E-07 51.6 3.0 79 193-275 112-190 (201)
8 d2qmma1 c.116.1.7 (A:95-288) U 94.7 0.013 9.5E-07 48.9 4.4 77 194-274 108-184 (194)
9 d1gz0a1 c.116.1.1 (A:78-243) R 92.1 0.19 1.4E-05 39.7 7.3 109 122-251 24-133 (166)
10 d1ipaa1 c.116.1.1 (A:106-263) 91.0 0.39 2.8E-05 37.4 8.0 107 121-251 16-124 (158)
11 d1v2xa_ c.116.1.1 (A:) tRNA (G 85.8 1.3 9.6E-05 35.5 8.1 107 122-251 28-136 (191)
12 d1vh0a_ c.116.1.3 (A:) Hypothe 74.0 3.3 0.00024 32.0 6.4 76 201-280 64-146 (157)
13 d1k3ra2 c.116.1.2 (A:1-92,A:16 65.6 0.41 3E-05 39.3 -1.1 74 206-282 111-189 (191)
14 d1rpxa_ c.1.2.2 (A:) D-ribulos 62.7 5.2 0.00038 33.0 5.6 137 113-270 68-215 (230)
15 d1to0a_ c.116.1.3 (A:) Hypothe 61.1 11 0.00077 28.9 6.9 76 201-280 64-146 (157)
16 d1nppa2 b.34.5.4 (A:191-248) N 59.2 3.9 0.00028 26.6 3.3 31 70-100 5-37 (58)
17 d1mhna_ b.34.9.1 (A:) Survival 58.0 9.1 0.00066 24.5 5.0 33 69-101 3-38 (59)
18 d1nz9a_ b.34.5.4 (A:) N-utiliz 56.3 3.6 0.00026 26.8 2.7 27 70-96 5-31 (58)
19 d1mxia_ c.116.1.1 (A:) Hypothe 56.0 16 0.0012 27.1 7.1 28 117-146 3-31 (156)
20 d1vqot1 b.34.5.1 (T:1-119) Rib 53.2 4.1 0.0003 30.6 2.9 49 54-102 25-74 (119)
21 d2d9ta1 b.34.9.1 (A:8-67) Tudo 52.4 14 0.001 23.5 5.3 27 71-97 4-31 (60)
22 d2qqra1 b.34.9.1 (A:897-955) J 51.1 12 0.00085 24.5 4.5 28 70-97 3-30 (59)
23 d1o6da_ c.116.1.3 (A:) Hypothe 48.7 11 0.0008 28.5 4.9 76 201-280 57-138 (147)
24 d2bmwa1 b.43.4.2 (A:9-141) Fer 44.3 10 0.00076 28.0 4.1 62 21-85 63-131 (133)
25 d2flia1 c.1.2.2 (A:3-219) D-ri 44.0 11 0.00083 30.3 4.6 135 113-270 59-204 (217)
26 d2do3a1 b.34.5.5 (A:462-523) T 43.9 10 0.00073 25.1 3.4 33 69-101 10-42 (62)
27 d1b34a_ b.38.1.1 (A:) D1 core 38.5 22 0.0016 24.0 4.7 33 64-96 2-34 (80)
28 d2zjrr1 b.34.5.1 (R:4-113) Rib 37.8 10 0.00075 27.8 2.9 37 65-101 8-44 (110)
29 d1tqja_ c.1.2.2 (A:) D-ribulos 35.0 12 0.00087 30.4 3.2 137 113-270 60-207 (221)
30 d2hqxa1 b.34.9.1 (A:8-97) P100 34.0 37 0.0027 23.1 5.4 34 69-102 25-59 (90)
31 d1jb9a1 b.43.4.2 (A:6-162) Fer 33.9 12 0.00091 28.7 3.0 62 20-84 79-150 (157)
32 d2vgba1 b.58.1.1 (A:160-261) P 32.2 22 0.0016 24.8 4.0 33 70-105 52-84 (102)
33 d1fnda1 b.43.4.2 (A:19-154) Fe 31.3 30 0.0021 25.6 4.8 61 21-84 69-135 (136)
34 d1wgsa_ b.34.13.3 (A:) Probabl 30.9 25 0.0018 26.4 4.2 26 69-94 12-37 (133)
35 d2g50a1 b.58.1.1 (A:116-217) P 28.7 28 0.002 24.3 4.0 33 70-105 52-84 (102)
36 d1e0ta1 b.58.1.1 (A:70-167) Py 28.6 25 0.0018 24.3 3.7 33 70-105 48-80 (98)
37 d1y71a1 b.34.16.1 (A:4-127) Ki 27.1 62 0.0045 23.8 5.8 35 71-106 3-37 (124)
38 d1d3ba_ b.38.1.1 (A:) D3 core 27.0 34 0.0025 22.4 4.0 31 66-96 5-35 (72)
39 d1dm9a_ d.66.1.3 (A:) Heat sho 26.4 14 0.001 26.5 2.0 44 50-97 28-71 (104)
40 d1vpza_ b.151.1.1 (A:) Carbon 25.4 20 0.0015 23.1 2.3 38 62-104 1-38 (57)
41 d1oz2a3 b.34.9.3 (A:422-527) L 25.1 67 0.0049 22.6 5.7 35 69-103 27-63 (106)
42 d2f5ka1 b.34.13.3 (A:6-88) Mor 25.0 44 0.0032 22.9 4.4 25 69-94 5-29 (83)
43 d1o9ya_ b.139.1.1 (A:) Structu 24.8 73 0.0054 20.3 5.5 32 64-95 20-61 (71)
44 d1sf8a_ d.271.1.1 (A:) Chapero 24.6 24 0.0018 25.5 3.1 33 233-266 27-59 (115)
45 d1gcqc_ b.34.2.1 (C:) Vav N-te 23.9 41 0.003 21.9 3.9 26 66-91 25-52 (69)
46 d1h641_ b.38.1.1 (1:) Archaeal 21.7 51 0.0037 21.2 4.1 31 66-96 5-35 (71)
47 d2ix0a3 b.40.4.5 (A:558-644) E 21.6 37 0.0027 23.2 3.4 24 81-104 2-25 (87)
No 1
>d1nxza2 c.116.1.5 (A:74-247) Hypothetical protein HI0303 {Haemophilus influenzae [TaxId: 727]}
Probab=100.00 E-value=5.6e-47 Score=326.34 Aligned_cols=163 Identities=21% Similarity=0.274 Sum_probs=139.9
Q ss_pred cceEEEEeeccCCCcHHHHHHHHHhcCccEEEEeecccccccccc-----cccccccccchhhchhchhhhhcCCCCcce
Q 045537 115 QWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI-----GDNGFLSCNFYYGFIANSAFVYGGQRLHEM 189 (291)
Q Consensus 115 ~i~l~la~~l~K~~r~d~iiekatELGV~~I~P~~se~~~RS~~~-----~~~k~eRw~~~~kIi~~~eA~kQs~r~~lP 189 (291)
++.|+|++|+||+++|||+|||||||||++|+|+.++ ||+.+ ..+|.+||+ +|+ ++|||||+|+++|
T Consensus 4 ~~~i~l~~al~k~~~~~~ilqk~tELGV~~i~p~~s~---rs~~~~~~~~~~~k~~r~~---~i~--~~A~eQsgr~~lP 75 (174)
T d1nxza2 4 HLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSE---RCGVKLDAERMDKKIQQWQ---KIA--IAACEQCGRNIVP 75 (174)
T ss_dssp SSCEEEEEECCSSSCHHHHHHHHHHTTCCEEEEEECT---TSCCCCCHHHHHHHHHHHH---HHH--HHHHHHHCCSSCC
T ss_pred CceEEEEEeecCcchHHHHHHHHHhhCcceEEechHh---hcccccchhHHHhhHHHHH---HHH--HHHHHhcCccccc
Confidence 3456778899999999999999999999999999999 98753 235678888 999 9999999999999
Q ss_pred eEcCCCCHhhhccccCCCceEEEEeCCCCChhhhhccCCCCCceEEEEcCCCCCCHHHHHHHHHcCCeEEecCCCccccc
Q 045537 190 VLNPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVE 269 (291)
Q Consensus 190 ~I~~p~~l~~~l~~~~~~~~~lv~~~~~~~~~~~l~~~~~~~~i~lvIGPEGGfs~~Ei~~l~~~Gf~~vsLG~rILRtE 269 (291)
+|.++.+|+++++... .+..+++++++......+.. ...++++++||||||||++|++.+.++||.+|+||+||||+|
T Consensus 76 ~i~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~i~iiIGPEGGfs~~E~~~~~~~g~~~v~LG~~ILR~E 153 (174)
T d1nxza2 76 EIRPLMKLQDWCAEND-GALKLNLHPRAHYSIKTLPT-IPAGGVRLLIGSEGGLSAQEIAQTEQQGFTEILLGKRVLRTE 153 (174)
T ss_dssp EECCCEEHHHHHHCCS-SCEEEEECTTCSCBGGGCCC-CCTTCEEEEECCTTCCCHHHHHHHHHTTCEEEBCCSSCCCHH
T ss_pred cccchhhHHHHHhhhc-chhhhhhhhhhhhhhhhhcc-CCCCcEEEEEcCCcCcCHHHHHHHHHCCCeEeeCCCCcchHH
Confidence 9999999999997653 45667777766554444332 235689999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHH-HccCCCC
Q 045537 270 TATIALLATLM-LCSDSQQ 287 (291)
Q Consensus 270 TAai~ala~l~-~~~~~~~ 287 (291)
||+++|+|++. ++||+.+
T Consensus 154 TA~i~als~l~~~~gdl~~ 172 (174)
T d1nxza2 154 TASLAAISALQICFGDLGE 172 (174)
T ss_dssp HHHHHHHHHHHHHHSSTTC
T ss_pred hHHHHHHHHHHHHhccccc
Confidence 99999999996 6888865
No 2
>d1vhka2 c.116.1.5 (A:74-253) Hypothetical protein YqeU {Bacillus subtilis [TaxId: 1423]}
Probab=100.00 E-value=7.6e-47 Score=327.14 Aligned_cols=164 Identities=27% Similarity=0.356 Sum_probs=135.8
Q ss_pred ccceEEEEeeccCCCcHHHHHHHHHhcCccEEEEeecccccccccc-----cccccccccchhhchhchhhhhcCCCCcc
Q 045537 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI-----GDNGFLSCNFYYGFIANSAFVYGGQRLHE 188 (291)
Q Consensus 114 ~~i~l~la~~l~K~~r~d~iiekatELGV~~I~P~~se~~~RS~~~-----~~~k~eRw~~~~kIi~~~eA~kQs~r~~l 188 (291)
.+++|+|++|++|+++|||+|||||||||++|+|+.|+ ||+.+ ..+|.+||+ +|+ ++|||||+|+++
T Consensus 4 ~p~~i~L~~~l~K~~~~~~ilqk~tELGV~~i~p~~s~---rs~~~~~~~~~~~~~~r~~---~i~--~eA~eQsgr~~l 75 (180)
T d1vhka2 4 LPIKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAA---RSVVKLDDKKAKKKRERWT---KIA--KEAAEQSYRNEV 75 (180)
T ss_dssp CSSEEEEEEECCSTTHHHHHHHHHHHTTCCEEEEECCT---TCCCC---------HHHHH---HHH--HHHHHHTTCSSC
T ss_pred CCcEEEEEEeecCcchHHHHHHHHHhhCcceEEeeecc---cccccccchhhhhhHHHHH---HHH--HHHHHhhccccc
Confidence 45678889999999999999999999999999999999 99753 245678888 999 999999999999
Q ss_pred eeEcCCCCHhhhccccCCCceEEEEeCCCCCh------hhhhccCCCCCceEEEEcCCCCCCHHHHHHHHHcCCeEEecC
Q 045537 189 MVLNPPMKIDGLLPLVSQSKLAFVAIAEATPL------VTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLG 262 (291)
Q Consensus 189 P~I~~p~~l~~~l~~~~~~~~~lv~~~~~~~~------~~~l~~~~~~~~i~lvIGPEGGfs~~Ei~~l~~~Gf~~vsLG 262 (291)
|+|..+.+|+++++...+.+..+++++..... ..........++++++||||||||++|++.+.++||.+++||
T Consensus 76 P~i~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~g~~~v~LG 155 (180)
T d1vhka2 76 PRVMDVHSFQQLLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLIVFGPEGGLTEAEVERLTEQDGVTCGLG 155 (180)
T ss_dssp CEECCCBCHHHHHHHGGGSSEEEEECC--------CHHHHHHHTCCTTCEEEEEECCTTCCCHHHHHHHHHTTCEEECCC
T ss_pred cccccCCCHHHHHHhccccccEEEEecccccccchhHHHHHHhccCCCCeEEEEecCCCCCCHHHHHHHHHCCCEEEECC
Confidence 99999999999998877667777777644221 111222234568999999999999999999999999999999
Q ss_pred CCccccchHHHHHHHHHHHccCC
Q 045537 263 PHRLRVETATIALLATLMLCSDS 285 (291)
Q Consensus 263 ~rILRtETAai~ala~l~~~~~~ 285 (291)
+||||+|||+++|+|++++..++
T Consensus 156 ~~ILR~ETA~i~als~l~~~~~l 178 (180)
T d1vhka2 156 PRILRTETAPLYALSAISYQTEL 178 (180)
T ss_dssp SSCCCTTTHHHHHHHHHHHHHHT
T ss_pred CCcchHHhHHHHHHHHHHHHHHh
Confidence 99999999999999999765443
No 3
>d1v6za2 c.116.1.5 (A:67-228) Hypothetical protein TTHA0657 (TT1575) {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=1.8e-45 Score=313.72 Aligned_cols=153 Identities=31% Similarity=0.372 Sum_probs=131.8
Q ss_pred ccceEEEEeeccCCCcHHHHHHHHHhcCccEEEEeecccccccccc--cccccccccchhhchhchhhhhcCCCCcceeE
Q 045537 114 TQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKI--GDNGFLSCNFYYGFIANSAFVYGGQRLHEMVL 191 (291)
Q Consensus 114 ~~i~l~la~~l~K~~r~d~iiekatELGV~~I~P~~se~~~RS~~~--~~~k~eRw~~~~kIi~~~eA~kQs~r~~lP~I 191 (291)
.++.|+|++|+||+++|||+|||||||||++|+|+.++ ||+.+ .++|++||+ +|+ ++|||||+|+++|+|
T Consensus 3 ~~~~i~L~~~l~K~~~~~~il~k~tELGV~~i~p~~se---rs~~k~~~~~k~~r~~---~i~--~~A~~Qs~r~~lP~i 74 (162)
T d1v6za2 3 VGVEVVLYVALLKGDKLAEVVRAATELGATRIQPLVTR---HSVPKEMGEGKLRRLR---AVA--LEAAKQSGRVVVPEV 74 (162)
T ss_dssp CSSCEEEEEECCSTTHHHHHHHHHHHTTCSEEEEEECT---TCSCSCCCHHHHHHHH---HHH--HHHHHHTTCSSCCEE
T ss_pred CCceEEEEEeccCchHHHHHHHHHHhhCcCEEEEEEec---ccchhhhchhhhhHHH---HHH--HHHHHhccccCCCcc
Confidence 35678889999999999999999999999999999999 99753 345778888 999 999999999999999
Q ss_pred cCCCCHhhhccccCCCceEEEEeCCCCCh-hhhhccCCCCCceEEEEcCCCCCCHHHHHHHHHcCCeEEecCCCccccch
Q 045537 192 NPPMKIDGLLPLVSQSKLAFVAIAEATPL-VTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVET 270 (291)
Q Consensus 192 ~~p~~l~~~l~~~~~~~~~lv~~~~~~~~-~~~l~~~~~~~~i~lvIGPEGGfs~~Ei~~l~~~Gf~~vsLG~rILRtET 270 (291)
..|.+|+++++.. ..++++.+.... ...+. ..+++.++||||||||++|++.+.++||.+|+||+||||+||
T Consensus 75 ~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~i~i~IGPEGGfs~~Ei~~l~~~g~~~v~LG~~ILR~ET 147 (162)
T d1v6za2 75 LPPIPLKAVPQVA----QGLVAHVGATARVREVLD---PEKPLALAVGPEGGFAEEEVALLEARGFTPVSLGRRILRAET 147 (162)
T ss_dssp CCCEEGGGCCCCS----SEEEECTTCCCCHHHHCC---TTSCEEEEECCTTCCCHHHHHHHHHHTEEEECCCSSCCCHHH
T ss_pred ccccCHHHHhhhc----chhhccccccccchhhhc---ccCcceEEEeccCCCCHHHHHHHHHCCCEEEECCCCccHHHh
Confidence 9999999987542 345666665443 33322 356899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 045537 271 ATIALLATLML 281 (291)
Q Consensus 271 Aai~ala~l~~ 281 (291)
|+++|+|++++
T Consensus 148 A~i~als~~~~ 158 (162)
T d1v6za2 148 AALALLALCTA 158 (162)
T ss_dssp HHHHHHHHHTG
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 4
>d1nxza1 b.122.1.2 (A:2-73) Hypothetical protein HI0303 {Haemophilus influenzae [TaxId: 727]}
Probab=99.66 E-value=7.7e-17 Score=118.16 Aligned_cols=63 Identities=24% Similarity=0.443 Sum_probs=58.9
Q ss_pred cccEEEe-----CCcEEEEcchhhhHHHHcccCCCCCEEEEEeCCCCEEEEEEEEeeCCceEEEeeec
Q 045537 43 GIPRFFS-----QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALED 105 (291)
Q Consensus 43 ~~~rff~-----~~~~v~L~~~~~~Hl~kVLRlk~Gd~i~v~dG~g~~~~a~I~~i~k~~~~v~i~~~ 105 (291)
++||||+ .++.+.|+++++||+.||||+++||.|.++||+|+.|.|+|++++++.+.+++.+.
T Consensus 1 ripR~f~~~~l~~~~~i~L~~~~~hHl~~VLR~k~Gd~v~l~dg~g~~~~~~I~~i~k~~~~~~i~~~ 68 (72)
T d1nxza1 1 RIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKSVKVEILGR 68 (72)
T ss_dssp CCCEEECSSCCTTCSEEECCHHHHHHHHTTSCCCTTCEEEEECSSSEEEEEEEEEEETTEEEEEECCC
T ss_pred CCccEEcCcccCCCCEEEcCHHHHHHHHheeCCCCCCEEEEEeCCCCEEEEEEEEEeCCEEEEEEEEE
Confidence 5899998 56789999999999999999999999999999999999999999999999988754
No 5
>d1vhka1 b.122.1.2 (A:2-73) Hypothetical protein YqeU {Bacillus subtilis [TaxId: 1423]}
Probab=99.59 E-value=1.7e-15 Score=110.97 Aligned_cols=62 Identities=18% Similarity=0.364 Sum_probs=57.2
Q ss_pred cEEEe--------CCcEEEEcchhhhHHHHcccCCCCCEEEEEeCCCCEEEEEEEEeeCCceEEEeeecc
Q 045537 45 PRFFS--------QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDL 106 (291)
Q Consensus 45 ~rff~--------~~~~v~L~~~~~~Hl~kVLRlk~Gd~i~v~dG~g~~~~a~I~~i~k~~~~v~i~~~~ 106 (291)
+|||+ .++.+.|+++++||+.||||+++||.|.|+||+|+.|.|+|++++++.+.+++++..
T Consensus 1 QR~Fi~~~~~~~~~~~~i~l~~~~~hHl~~VLR~k~Gd~i~l~dg~g~~~~~~I~~i~k~~v~~~i~e~~ 70 (72)
T d1vhka1 1 QRYFIELTKQQIEEAPTFSITGEEVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSKDKVSCLVIEWT 70 (72)
T ss_dssp CEEECSSCHHHHHSSSSEEEESHHHHHHHTTTCCCTTCEEEEECTTSCEEEEEEEEECSSEEEEEEEEEC
T ss_pred CcEEECCchhhcccCCEEEECHHHHHHHHheeccCCCCEEEEEECCCCEEEEEEEEEECCEEEEEEEEEe
Confidence 58887 367899999999999999999999999999999999999999999999999887753
No 6
>d1v6za1 b.122.1.2 (A:4-66) Hypothetical protein TTHA0657 (TT1575) {Thermus thermophilus [TaxId: 274]}
Probab=97.48 E-value=5.9e-05 Score=50.31 Aligned_cols=57 Identities=28% Similarity=0.313 Sum_probs=42.1
Q ss_pred EEEeCCcEEEEcchhhhHHHHcccCCCCCEEEEEeCCCCEEEEEEEEeeCCceEEEeee
Q 045537 46 RFFSQGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE 104 (291)
Q Consensus 46 rff~~~~~v~L~~~~~~Hl~kVLRlk~Gd~i~v~dG~g~~~~a~I~~i~k~~~~v~i~~ 104 (291)
|-|..|-+-.|+=++.+|+..|||.++||.+.|||+ .++..|++++.+.- +..++.+
T Consensus 2 ra~spgltgvlpl~e~rhlvevlra~vgdrftvfd~-~realaevvdlgpp-~ryrile 58 (63)
T d1v6za1 2 RAFSPGLTGVLPLRETRHLVEVLRARVGDRFTVFDG-EREALAEVVDLGPP-LRYRVLE 58 (63)
T ss_dssp EEECGGGCSBCCHHHHHHHHTTSCCCTTCEEEEECS-SCEEEEEEEECCSS-CEEEEEE
T ss_pred CccCCCcceeeechhcchHHHHHHhccCcceEEecc-hHHHHHHHHhcCCc-hhhhhhh
Confidence 334433333456689999999999999999999998 46889999888763 3444444
No 7
>d2qwva1 c.116.1.7 (A:5-205) Uncharacterized protein VCA1059 {Vibrio cholerae [TaxId: 666]}
Probab=95.06 E-value=0.0053 Score=51.63 Aligned_cols=79 Identities=13% Similarity=0.209 Sum_probs=51.7
Q ss_pred CCCCHhhhccccCCCceEEEEeCCCCChhhhhccCCCCCceEEEEcCCCCCCHHHHHHHHHcCCeEEecCCCccccchHH
Q 045537 193 PPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETAT 272 (291)
Q Consensus 193 ~p~~l~~~l~~~~~~~~~lv~~~~~~~~~~~l~~~~~~~~i~lvIGPEGGfs~~Ei~~l~~~Gf~~vsLG~rILRtETAa 272 (291)
.-.+|++.++.+......+++++++.++.+. ....+.+++.|=-=||+++|.+.+...|+..+||||+.|=+..+.
T Consensus 112 ~~~~~e~~l~e~~e~~~~~~Lde~G~~i~~~----~~~~~~~FILsDh~~~~~~e~~~L~~~g~~~iSLGp~~L~ashcI 187 (201)
T d2qwva1 112 RTISFEALLGELAEHHSLYMMDKKGDSIRDI----KIGPNPCFILTDHIPMPKKSGNSMKRLGVEKISLGPKMLFASQCV 187 (201)
T ss_dssp ECCCHHHHHHHHHTTSEEEEEEEEEEETTTS----CCCSSEEEEECC----------CTTTTTCEEEECCSSCCCHHHHH
T ss_pred eCCCHHHHHHHHhcCCcEEEECCCCCchhhc----cCCCCCEEEEeCCCCCCHHHHHHHHhcCCeeEeeccHHHHHhHHH
Confidence 3458999988764444578888877765432 223567899999999999999999999999999999999998765
Q ss_pred HHH
Q 045537 273 IAL 275 (291)
Q Consensus 273 i~a 275 (291)
+.+
T Consensus 188 ~iv 190 (201)
T d2qwva1 188 TLI 190 (201)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 8
>d2qmma1 c.116.1.7 (A:95-288) Uncharacterized protein AF1056 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=94.65 E-value=0.013 Score=48.90 Aligned_cols=77 Identities=16% Similarity=0.232 Sum_probs=59.5
Q ss_pred CCCHhhhccccCCCceEEEEeCCCCChhhhhccCCCCCceEEEEcCCCCCCHHHHHHHHHcCCeEEecCCCccccchHHH
Q 045537 194 PMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273 (291)
Q Consensus 194 p~~l~~~l~~~~~~~~~lv~~~~~~~~~~~l~~~~~~~~i~lvIGPEGGfs~~Ei~~l~~~Gf~~vsLG~rILRtETAai 273 (291)
-.+|++.+..+......+++++++.++... ....+.+++.|=-=||+++|.+.+...|+..+|||++-|=+..+.+
T Consensus 108 ~~~~e~~l~e~~~~~~~~~Ld~~G~~i~~~----~~~~~~~FILsDh~~l~~~e~~~L~~~~~~~iSLGp~~L~a~hcI~ 183 (194)
T d2qmma1 108 RKGLEELIEELSEKYSIIYLKEDGVDISNA----QLPPNPLFVIGDHEGLTEEQEKVVERYAALKLSLSPLSLLAEQCVV 183 (194)
T ss_dssp CCCHHHHHHHHHHHSEEEEEEEEEEEGGGS----CCCSSEEEEEECTTCCCHHHHHHHHTTCSEEEECCSSCCCHHHHHH
T ss_pred CCCHHHHHHHHhccCcEEEECCCCCccccc----ccCCCCeEEEeCCCCCChHHHHHHhhcCCeeEeccccccchhhhHh
Confidence 358888887764334556788877766542 1234677999999999999999999999999999999999887654
Q ss_pred H
Q 045537 274 A 274 (291)
Q Consensus 274 ~ 274 (291)
.
T Consensus 184 i 184 (194)
T d2qmma1 184 I 184 (194)
T ss_dssp H
T ss_pred H
Confidence 3
No 9
>d1gz0a1 c.116.1.1 (A:78-243) RlmB, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=92.14 E-value=0.19 Score=39.66 Aligned_cols=109 Identities=12% Similarity=0.121 Sum_probs=62.8
Q ss_pred eeccCCCcHHHHHHHHHhcCccEEEEeecccccccccccccccccccchhhchhchhhhhcCCCCcceeEcCCCCHhhhc
Q 045537 122 FGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLL 201 (291)
Q Consensus 122 ~~l~K~~r~d~iiekatELGV~~I~P~~se~~~RS~~~~~~k~eRw~~~~kIi~~~eA~kQs~r~~lP~I~~p~~l~~~l 201 (291)
-.+-++..+--+++-|.-+|++.++..... + ..|. ..+ ..++.-+. .++|... ..++.+++
T Consensus 24 d~i~~p~N~GaiiRta~afG~~~v~~~~~~----~--------~~~~---~~~--~r~s~g~~-~~v~~~~-~~~~~~~l 84 (166)
T d1gz0a1 24 DGVTDPHNLGACLRSADAAGVHAVIVPKDR----S--------AQLN---ATA--KKVACGAA-ESVPLIR-VTNLARTM 84 (166)
T ss_dssp ESCCCHHHHHHHHHHHHHHTCSEEEEESSS----S--------CCCC---HHH--HHHHTTHH-HHSCEEE-ESCHHHHH
T ss_pred eCCCCcchHHHHHHHHHhcCCceeeeeccc----c--------cccc---hhh--heeccCcc-eEeceee-cCCHHHHH
Confidence 356678889999999999999998643322 1 2222 222 22222211 1233332 23677877
Q ss_pred cccCCCceEEEEeCCCCChhhhhccCCCCCceEEEEcCCC-CCCHHHHHHH
Q 045537 202 PLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEG-DFTEKEVNKI 251 (291)
Q Consensus 202 ~~~~~~~~~lv~~~~~~~~~~~l~~~~~~~~i~lvIGPEG-Gfs~~Ei~~l 251 (291)
+.+......++........ .+......+++++++|.|+ |.|+++++..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~lv~G~E~~Gls~~~l~~~ 133 (166)
T d1gz0a1 85 RMLQEENIWIVGTAGEADH--TLYQSKMTGRLALVMGAEGEGMRRLTREHC 133 (166)
T ss_dssp HHHHHTTCEEEEECTTCSE--EGGGSCCCSSEEEEEEBTTTBSCHHHHHTC
T ss_pred HHhcccccccccccccccc--cHHHhhccCCeEEEeccCcCCCCHHHHHhC
Confidence 6654444444443222111 1122234578999999999 9999987754
No 10
>d1ipaa1 c.116.1.1 (A:106-263) RrmA (RrmH), C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=91.02 E-value=0.39 Score=37.37 Aligned_cols=107 Identities=20% Similarity=0.149 Sum_probs=59.1
Q ss_pred EeeccCCCcHHHHHHHHHhcCccEEEEeecccccccccccccccccccchhhchhchhhhhcCCCCcceeEcCCCCHhhh
Q 045537 121 AFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGL 200 (291)
Q Consensus 121 a~~l~K~~r~d~iiekatELGV~~I~P~~se~~~RS~~~~~~k~eRw~~~~kIi~~~eA~kQs~r~~lP~I~~p~~l~~~ 200 (291)
+-.+-++..+--+++-|.-+|++.++...+ +. -|. .-+ ..++..+ -.++|.+.. +..++
T Consensus 16 ld~i~dP~NlGai~Rta~~fG~~~v~~~~~----~~---------~~~---~~~--~r~s~g~-~~~~~~~~~--~~~~~ 74 (158)
T d1ipaa1 16 AVGLEKPGNLGAVLRSADAAGAEAVLVAGG----VD---------LYS---PQV--IRNSTGV-VFSLRTLAA--SESEV 74 (158)
T ss_dssp EESCCCHHHHHHHHHHHHHHTCSEEEEESC----CC---------TTC---HHH--HHHTTTG-GGTSCEEEE--CHHHH
T ss_pred EeCCCCCchHHHHHHHHHhhccchhhhccc----cc---------ccc---hhh--heecccc-eeeeccccc--chHHH
Confidence 346778889999999999999999864322 11 122 222 2222211 122333321 33444
Q ss_pred ccccCCCceEEEE-eCCCCChhhhhccCCCCCceEEEEcCCC-CCCHHHHHHH
Q 045537 201 LPLVSQSKLAFVA-IAEATPLVTALSSSRNESSGLIIVGPEG-DFTEKEVNKI 251 (291)
Q Consensus 201 l~~~~~~~~~lv~-~~~~~~~~~~l~~~~~~~~i~lvIGPEG-Gfs~~Ei~~l 251 (291)
+......+..+++ +........ .....+++++++|+|+ |.|+++++..
T Consensus 75 ~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~lvfG~E~~Gls~~~l~~~ 124 (158)
T d1ipaa1 75 LDWIKQHNLPLVATTPHAEALYW---EANLRPPVAIAVGPEHEGLRAAWLEAA 124 (158)
T ss_dssp HHHHHHTTCCEEEECTTCSSBGG---GSCCCSSEEEEECCTTSCCCHHHHHHC
T ss_pred HHHHHhhccccccccccccccch---hcccCcceEEEEcccccccCHHHHHhC
Confidence 4433333333443 333332221 1123568999999997 9999998865
No 11
>d1v2xa_ c.116.1.1 (A:) tRNA (Gm18) methyltransferase TrmH {Thermus thermophilus [TaxId: 274]}
Probab=85.85 E-value=1.3 Score=35.46 Aligned_cols=107 Identities=8% Similarity=0.078 Sum_probs=60.4
Q ss_pred eeccCCCcHHHHHHHHHhcCccEEEEeecccccccccccccccccccchhhchhchhhhhcCCCCcceeEcCCCCHhhhc
Q 045537 122 FGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLNPPMKIDGLL 201 (291)
Q Consensus 122 ~~l~K~~r~d~iiekatELGV~~I~P~~se~~~RS~~~~~~k~eRw~~~~kIi~~~eA~kQs~r~~lP~I~~p~~l~~~l 201 (291)
-.+-++..+--+++-|.-+|++.++.+... +.. ..+. +.. . +......+....++.+++
T Consensus 28 d~i~~p~NiG~IiRta~afG~~~v~l~~~~----~~~------~~~~---~~~------~--~~~~~~~~~~~~~~~~~l 86 (191)
T d1v2xa_ 28 ENVHKPHNLSAILRTCDAVGVLEAHAVNPT----GGV------PTFN---ETS------G--GSHKWVYLRVHPDLHEAF 86 (191)
T ss_dssp ESCCCHHHHHHHHHHHHHHTBSEEEEESGG----GGS------CCCC---SSC------S--SGGGTSEEEEESSHHHHH
T ss_pred eCCCCCchHHHHHHHHHhhccccccccCCc----ccc------ceee---ecc------h--hhheeecccccchhhhHH
Confidence 466678889999999999999998754322 110 1112 111 1 112222233344677776
Q ss_pred cccCCCceEEEE-eCCCCChhhhhccCCCCCceEEEEcCCC-CCCHHHHHHH
Q 045537 202 PLVSQSKLAFVA-IAEATPLVTALSSSRNESSGLIIVGPEG-DFTEKEVNKI 251 (291)
Q Consensus 202 ~~~~~~~~~lv~-~~~~~~~~~~l~~~~~~~~i~lvIGPEG-Gfs~~Ei~~l 251 (291)
..+...+..++. +..... ..+......+++++++|.|| |.|++.++..
T Consensus 87 ~~l~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~lV~G~E~~Gls~~~l~~~ 136 (191)
T d1v2xa_ 87 RFLKERGFTVYATALREDA--RDFREVDYTKPTAVLFGAEKWGVSEEALALA 136 (191)
T ss_dssp HHHHHTTCEEEEECCCTTS--EEGGGSCTTSSEEEEECBTTTBSCHHHHHHS
T ss_pred HHHhhcCCccccccccccc--cccccccCCCCeEEEEccccccccHHHHHhC
Confidence 655433443333 322211 01112223568999999998 8999987775
No 12
>d1vh0a_ c.116.1.3 (A:) Hypothetical protein SAV0024/SA0023 {Staphylococcus aureus [TaxId: 1280]}
Probab=73.96 E-value=3.3 Score=32.00 Aligned_cols=76 Identities=9% Similarity=0.223 Sum_probs=51.7
Q ss_pred ccccCCCceEEEEeCCCCCh-----hhhhcc--CCCCCceEEEEcCCCCCCHHHHHHHHHcCCeEEecCCCccccchHHH
Q 045537 201 LPLVSQSKLAFVAIAEATPL-----VTALSS--SRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273 (291)
Q Consensus 201 l~~~~~~~~~lv~~~~~~~~-----~~~l~~--~~~~~~i~lvIGPEGGfs~~Ei~~l~~~Gf~~vsLG~rILRtETAai 273 (291)
++.+...+..+++++.+..+ ...+.. ....+.+.++||+--||+++ +.+..-..+|||+-++-=|-|-+
T Consensus 64 l~~i~~~~~~I~LDe~Gk~~sS~~fA~~i~~~~~~g~~~i~FiIGGa~G~~~~----~~~~a~~~lSls~mT~pH~larv 139 (157)
T d1vh0a_ 64 LAKIKPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKD----VLQRSNYALSFSKMTFPHQMMRV 139 (157)
T ss_dssp HHTSCTTSEEEEEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEECBTTBCCHH----HHHHCSEEECSCSSCCCHHHHHH
T ss_pred HHhcCCCCeEEEEecccccCCCHHHHHHHHHHHhhcCCceEEEEcCCCccCHH----HHhhcCCEEECccCCchhHHHHH
Confidence 34444556677777765432 222211 12345799999999999987 33334467999999999999999
Q ss_pred HHHHHHH
Q 045537 274 ALLATLM 280 (291)
Q Consensus 274 ~ala~l~ 280 (291)
+.+=++.
T Consensus 140 ~l~EQlY 146 (157)
T d1vh0a_ 140 VLIEQVY 146 (157)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887664
No 13
>d1k3ra2 c.116.1.2 (A:1-92,A:164-262) Hypothetical protein MTH1 (MT0001), dimerisation domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=65.55 E-value=0.41 Score=39.32 Aligned_cols=74 Identities=18% Similarity=0.315 Sum_probs=44.3
Q ss_pred CCceEEEEeCCCCChhhh---hc-cCCCCCceEEEEc-CCCCCCHHHHHHHHHcCCeEEecCCCccccchHHHHHHHHHH
Q 045537 206 QSKLAFVAIAEATPLVTA---LS-SSRNESSGLIIVG-PEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIALLATLM 280 (291)
Q Consensus 206 ~~~~~lv~~~~~~~~~~~---l~-~~~~~~~i~lvIG-PEGGfs~~Ei~~l~~~Gf~~vsLG~rILRtETAai~ala~l~ 280 (291)
++|+.+-..+.+.+.... +. .....+.+.++.| |++|.-+-.-+.. -++.| .-|.|..|||=|.+.+||.+.
T Consensus 111 g~d~~I~TSr~G~~i~~~~~~~~~~~~~~~~~lvVFGgP~~Gl~~i~~D~~--vNt~P-~QGsrtIRTEEAv~itLa~Ln 187 (191)
T d1k3ra2 111 GADVVVATSRNASPITSILDEVKTRMRGAREAAILFGGPYKGLPEIDADIW--VNTLP-GQCTETVRTEEAVLATLSVFN 187 (191)
T ss_dssp CCSEEEEECTTSCBTTTSHHHHHHHHTTCSEEEEECCCSSSCCCSCCCSEE--EBSST-TCSSSCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEeCCCCcChhhhhhhccccccCCCeEEEEECCcccCchhhhCCeE--EEcCC-CCCCcceeHHHHHHHHHHHhh
Confidence 456555555555544321 11 1123467888888 5999954211100 12222 449999999999999999886
Q ss_pred Hc
Q 045537 281 LC 282 (291)
Q Consensus 281 ~~ 282 (291)
+.
T Consensus 188 ~i 189 (191)
T d1k3ra2 188 ML 189 (191)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 14
>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]}
Probab=62.71 E-value=5.2 Score=33.02 Aligned_cols=137 Identities=18% Similarity=0.153 Sum_probs=79.6
Q ss_pred CccceEEEEeeccCCCcHHHHHHHHHhcCccEEEEeecccccccccccccccccccchhhchhchhhhhcCCCCcceeEc
Q 045537 113 HTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLN 192 (291)
Q Consensus 113 ~~~i~l~la~~l~K~~r~d~iiekatELGV~~I~P~~se~~~RS~~~~~~k~eRw~~~~kIi~~~eA~kQs~r~~lP~I~ 192 (291)
..++.++|.. +. -+..+++..+.|++.|+.-.-. .....+. +++ ..+++.+--.=-.+.
T Consensus 68 ~~~~dvHLMv---~~--P~~~i~~~~~~g~~~i~~H~E~----------~~~~~~~---~~i---~~ik~~g~k~Gialn 126 (230)
T d1rpxa_ 68 DLPLDVHLMI---VE--PDQRVPDFIKAGADIVSVHCEQ----------SSTIHLH---RTI---NQIKSLGAKAGVVLN 126 (230)
T ss_dssp CSCEEEEEES---SS--HHHHHHHHHHTTCSEEEEECST----------TTCSCHH---HHH---HHHHHTTSEEEEEEC
T ss_pred Cceeeeeeee---cc--hhhhHHHHhhcccceeEEeccc----------cccccHH---HHH---HHHHHcCCeEEEEeC
Confidence 4456777653 22 3467899999999999743321 0111222 222 233333322222577
Q ss_pred CCCCHhhhccccCCCceEEEEe--CCC--CC----hhh---hhccCCCCCceEEEEcCCCCCCHHHHHHHHHcCCeEEec
Q 045537 193 PPMKIDGLLPLVSQSKLAFVAI--AEA--TP----LVT---ALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGL 261 (291)
Q Consensus 193 ~p~~l~~~l~~~~~~~~~lv~~--~~~--~~----~~~---~l~~~~~~~~i~lvIGPEGGfs~~Ei~~l~~~Gf~~vsL 261 (291)
+..+++.+.+.++.-+.+++.. ++. .. ... .+......+..-+.|.-.||.+.+-+..+.++|+..+-.
T Consensus 127 p~T~~~~l~~~l~~vD~VllM~V~PGf~GQ~f~~~~~~kI~~~~~~~~~~~~~~~I~vDGGIn~~~i~~l~~~Gad~~V~ 206 (230)
T d1rpxa_ 127 PGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAGANALVA 206 (230)
T ss_dssp TTCCGGGGTTTTTTCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCCTTTHHHHHHHTCCEEEE
T ss_pred CCCCHHHHHHHHhhCCEEEEEEecCCcccchhhhhhHHHHHHHHHHHHhcCCceEEEEECCcCHHHHHHHHHcCCCEEEE
Confidence 7778888776666566666553 211 11 111 110000001122446679999999999999999999999
Q ss_pred CCCccccch
Q 045537 262 GPHRLRVET 270 (291)
Q Consensus 262 G~rILRtET 270 (291)
|+-|+..+.
T Consensus 207 GS~if~~~d 215 (230)
T d1rpxa_ 207 GSAVFGAPD 215 (230)
T ss_dssp SHHHHTSSC
T ss_pred ChHHHCCCC
Confidence 999998875
No 15
>d1to0a_ c.116.1.3 (A:) Hypothetical protein YydA {Bacillus subtilis [TaxId: 1423]}
Probab=61.07 E-value=11 Score=28.87 Aligned_cols=76 Identities=8% Similarity=0.145 Sum_probs=50.8
Q ss_pred ccccCCCceEEEEeCCCCCh-----hhhhcc--CCCCCceEEEEcCCCCCCHHHHHHHHHcCCeEEecCCCccccchHHH
Q 045537 201 LPLVSQSKLAFVAIAEATPL-----VTALSS--SRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATI 273 (291)
Q Consensus 201 l~~~~~~~~~lv~~~~~~~~-----~~~l~~--~~~~~~i~lvIGPEGGfs~~Ei~~l~~~Gf~~vsLG~rILRtETAai 273 (291)
+..+...+..+++++.+..+ ...+.. ....+.+.++||.=-||+++- .+..-..+|||+-++-=+-|-+
T Consensus 64 l~~i~~~~~~I~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~FiIGGa~G~~~~~----~~~a~~~~Sls~mT~pH~l~r~ 139 (157)
T d1to0a_ 64 LSKISPDAHVIALAIEGKMKTSEELADTIDKLATYGKSKVTFVIGGSLGLSDTV----MKRADEKLSFSKMTFPHQLMRL 139 (157)
T ss_dssp HTTSCTTSEEEEEEEEEEECCHHHHHHHHHHHHTTTCCEEEEEECCSSCCCHHH----HHHCSEEEESCSSCCCHHHHHH
T ss_pred HhhcCCCCeEEEeccchhhhhHHHHHHHHHHHHhcCCcceEEEECCCCCCCHHH----HhhcCcEEecccCCchHHHHHH
Confidence 33444556677777765432 222221 112357999999999999873 3333467999999999999998
Q ss_pred HHHHHHH
Q 045537 274 ALLATLM 280 (291)
Q Consensus 274 ~ala~l~ 280 (291)
+.+=++.
T Consensus 140 ~l~EQiY 146 (157)
T d1to0a_ 140 ILVEQIY 146 (157)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8886663
No 16
>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein NusG, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=59.16 E-value=3.9 Score=26.58 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=23.6
Q ss_pred CCCCCEEEEEeCCCCEEEEEEEEeeCC--ceEE
Q 045537 70 LSTNDRVELFNGKGGLIEGCIQRIDRT--GLDV 100 (291)
Q Consensus 70 lk~Gd~i~v~dG~g~~~~a~I~~i~k~--~~~v 100 (291)
.++||.|++.+|-=.-+.|+|.+++.. .+.+
T Consensus 5 f~~Gd~V~I~~GpF~g~~g~V~~i~~~~~rv~V 37 (58)
T d1nppa2 5 FEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTV 37 (58)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEEGGGTEEEE
T ss_pred ccCCCEEEEcccCCCCCEEEEEEEcCCCCEEEE
Confidence 579999999999555568999988653 4444
No 17
>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.96 E-value=9.1 Score=24.52 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=24.5
Q ss_pred cCCCCCEEEEE-eCCCCEEEEEEEEeeCC--ceEEE
Q 045537 69 RLSTNDRVELF-NGKGGLIEGCIQRIDRT--GLDVV 101 (291)
Q Consensus 69 Rlk~Gd~i~v~-dG~g~~~~a~I~~i~k~--~~~v~ 101 (291)
.-++||..... ..+|..|+|+|.+++.+ .+.|.
T Consensus 3 ~wkvG~~C~A~~s~Dg~wYRA~I~~v~~~~~~~~V~ 38 (59)
T d1mhna_ 3 QWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVV 38 (59)
T ss_dssp CCCTTCEEEEECTTTSCEEEEEEEEEETTTTEEEEE
T ss_pred cCCcCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEE
Confidence 45899988765 56899999999998644 34443
No 18
>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=56.32 E-value=3.6 Score=26.80 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=21.4
Q ss_pred CCCCCEEEEEeCCCCEEEEEEEEeeCC
Q 045537 70 LSTNDRVELFNGKGGLIEGCIQRIDRT 96 (291)
Q Consensus 70 lk~Gd~i~v~dG~g~~~~a~I~~i~k~ 96 (291)
.++||.|.|.+|-=.-+.|+|.+++..
T Consensus 5 F~~Gd~V~I~~GpF~g~~g~V~~i~~~ 31 (58)
T d1nz9a_ 5 FREGDQVRVVSGPFADFTGTVTEINPE 31 (58)
T ss_dssp CCTTCEEEECSGGGTTCEEEEEEEETT
T ss_pred ccCCCEEEEeccCCCCCEEEEEEEcCC
Confidence 579999999999544458999888654
No 19
>d1mxia_ c.116.1.1 (A:) Hypothetical tRNA/rRNA methyltransfease HI0766 (YibK homologue) {Haemophilus influenzae [TaxId: 727]}
Probab=55.95 E-value=16 Score=27.12 Aligned_cols=28 Identities=7% Similarity=0.099 Sum_probs=20.4
Q ss_pred eEEEEeeccC-CCcHHHHHHHHHhcCccEEE
Q 045537 117 NVFAAFGTLK-GGRADWLVEKCTELGAQSVT 146 (291)
Q Consensus 117 ~l~la~~l~K-~~r~d~iiekatELGV~~I~ 146 (291)
+|+|.. |+ +..+--+++-|.-+||+.++
T Consensus 3 ~ivL~~--p~~P~NlGai~Rta~afGv~~v~ 31 (156)
T d1mxia_ 3 DIVLYE--PEIPQNTGNIIRLCANTGFRLHL 31 (156)
T ss_dssp EEEEES--CCCHHHHHHHHHHHHHHTCEEEE
T ss_pred EEEEeC--CCCCCcHHHHHHHHHHcCCcEEE
Confidence 444442 44 45788999999999998665
No 20
>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=53.22 E-value=4.1 Score=30.57 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=36.4
Q ss_pred EEEcch-hhhHHHHcccCCCCCEEEEEeCCCCEEEEEEEEeeCCceEEEe
Q 045537 54 VRVEGD-EFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVA 102 (291)
Q Consensus 54 v~L~~~-~~~Hl~kVLRlk~Gd~i~v~dG~g~~~~a~I~~i~k~~~~v~i 102 (291)
..|+.| ...|=.+-|+++.||.|.|+-|...=-.++|..++.+.-.+.+
T Consensus 25 a~LskeLr~k~~~r~~~IkkGD~V~Vi~Gk~KGk~GkV~~V~~k~~~V~V 74 (119)
T d1vqot1 25 ATLSADLREEYGQRNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHV 74 (119)
T ss_dssp EEECHHHHHHHTCSEEECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEE
T ss_pred CccChhhHHHhCCcccceeCCCEEEEeecCCCCCcceEEEEECCCCEEEE
Confidence 556543 5556678899999999999999644447999999877655543
No 21
>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=52.36 E-value=14 Score=23.45 Aligned_cols=27 Identities=7% Similarity=0.156 Sum_probs=21.8
Q ss_pred CCCCEEEEE-eCCCCEEEEEEEEeeCCc
Q 045537 71 STNDRVELF-NGKGGLIEGCIQRIDRTG 97 (291)
Q Consensus 71 k~Gd~i~v~-dG~g~~~~a~I~~i~k~~ 97 (291)
++||..... ..+|.-|+|+|.++....
T Consensus 4 kvG~~c~A~~~~D~~wYRA~I~~i~~~~ 31 (60)
T d2d9ta1 4 KPGDECFALYWEDNKFYRAEVEALHSSG 31 (60)
T ss_dssp CTTCEEEEECTTTCCEEEEEEEEECSSS
T ss_pred CcCCEEEEEECCCCCEEEEEEEEEcCCC
Confidence 789998775 458999999999987543
No 22
>d2qqra1 b.34.9.1 (A:897-955) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.06 E-value=12 Score=24.45 Aligned_cols=28 Identities=11% Similarity=0.197 Sum_probs=24.7
Q ss_pred CCCCCEEEEEeCCCCEEEEEEEEeeCCc
Q 045537 70 LSTNDRVELFNGKGGLIEGCIQRIDRTG 97 (291)
Q Consensus 70 lk~Gd~i~v~dG~g~~~~a~I~~i~k~~ 97 (291)
+..|+.|.--..+|+.|.|+|+++....
T Consensus 3 i~~Gq~VI~KhkNgryY~c~V~~~~~qt 30 (59)
T d2qqra1 3 ITAGQKVISKHKNGRFYQCEVVRLTTET 30 (59)
T ss_dssp CCTTCEEEEECTTSSEEEEEEEEEEEEE
T ss_pred cccccEEEEEccCCcEEEEEEEEeeeEE
Confidence 5789999999999999999999887643
No 23
>d1o6da_ c.116.1.3 (A:) Hypothetical protein TM0844 {Thermotoga maritima [TaxId: 2336]}
Probab=48.74 E-value=11 Score=28.52 Aligned_cols=76 Identities=11% Similarity=0.132 Sum_probs=49.4
Q ss_pred ccccCCCceEEEEeCCCCCh-----hhhhccC-CCCCceEEEEcCCCCCCHHHHHHHHHcCCeEEecCCCccccchHHHH
Q 045537 201 LPLVSQSKLAFVAIAEATPL-----VTALSSS-RNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRLRVETATIA 274 (291)
Q Consensus 201 l~~~~~~~~~lv~~~~~~~~-----~~~l~~~-~~~~~i~lvIGPEGGfs~~Ei~~l~~~Gf~~vsLG~rILRtETAai~ 274 (291)
++.+.+.+..+++++.++.+ ...+... ...++++++||.=-||+++ +.+.--..+|||+-++-=+-|-++
T Consensus 57 l~~i~~~~~~I~LDe~Gk~~sS~~fA~~l~~~~~~g~~i~FiIGGa~Gl~~~----~~~~a~~~lSls~mT~pH~l~rv~ 132 (147)
T d1o6da_ 57 TNRILPGSFVMVMDKRGEEVSSEEFADFLKDLEMKGKDITILIGGPYGLNEE----IFAKAHRVFSLSKMTFTHGMTVLI 132 (147)
T ss_dssp HTTCCTTCEEEEEEEEEEECCHHHHHHHHHHHHHHTCCEEEEECCTTCCCGG----GGGGCSEEEECCSSCCCHHHHHHH
T ss_pred hccCCCCCEEEEEecccCCcCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHH----HHHhcCcEEeCCcCcchHHHHHHH
Confidence 33444456677777765432 1112110 1135799999988899987 333334579999999999999888
Q ss_pred HHHHHH
Q 045537 275 LLATLM 280 (291)
Q Consensus 275 ala~l~ 280 (291)
.+=++.
T Consensus 133 l~EQlY 138 (147)
T d1o6da_ 133 VLEQIF 138 (147)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876653
No 24
>d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}
Probab=44.33 E-value=10 Score=27.95 Aligned_cols=62 Identities=18% Similarity=0.109 Sum_probs=38.7
Q ss_pred ccccccceecccCccccCCccccccEEEeC-------CcEEEEcchhhhHHHHcccCCCCCEEEEEeCCCCE
Q 045537 21 LKPLSLRAFSSSSSDYANQSRGGIPRFFSQ-------GGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGL 85 (291)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~rff~~-------~~~v~L~~~~~~Hl~kVLRlk~Gd~i~v~dG~g~~ 85 (291)
.++.-.|++|-+|+.......+..-++-+. ...-.-.|--+.||.+ +++||.|.+.-.-|..
T Consensus 63 ~~~~~~R~YSias~p~~~~~~~~~~~~~Vk~~~~~~~~~~~~~~G~~S~yL~~---lk~GD~v~v~GP~G~~ 131 (133)
T d2bmwa1 63 GKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTH---IEPGSEVKITGPVGKE 131 (133)
T ss_dssp SCBCCCEEEEBCSCTTTTTTSSSEEEEEEECCEECSSSSSSCEECHHHHHHHT---CCTTCEEEEEEEECSS
T ss_pred ccccceeeeeecCCCcCCCCCccEEEEEEEeccccccccCCCCCcEehhhHhh---CCCCCEEEEeCCccce
Confidence 456667999888876655443333333331 0011225777899864 8899999998776654
No 25
>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]}
Probab=44.04 E-value=11 Score=30.35 Aligned_cols=135 Identities=19% Similarity=0.236 Sum_probs=78.9
Q ss_pred CccceEEEEeeccCCCcHHHHHHHHHhcCccEEEEeecccccccccccccccccccchhhchhchhhhhcCCCCcceeEc
Q 045537 113 HTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLN 192 (291)
Q Consensus 113 ~~~i~l~la~~l~K~~r~d~iiekatELGV~~I~P~~se~~~RS~~~~~~k~eRw~~~~kIi~~~eA~kQs~r~~lP~I~ 192 (291)
..++.+++.. -++++ .+++..+.|++.|+. -.| - . +.+. +++ . -+++.+-..--.+.
T Consensus 59 ~~~~dvHLMv--~~P~~---~i~~~~~~ga~~i~~-H~E---~-----~---~~~~---~~i--~-~i~~~g~~~Gial~ 115 (217)
T d2flia1 59 KLVFDCHLMV--VDPER---YVEAFAQAGADIMTI-HTE---S-----T---RHIH---GAL--Q-KIKAAGMKAGVVIN 115 (217)
T ss_dssp CSEEEEEEES--SSGGG---GHHHHHHHTCSEEEE-EGG---G-----C---SCHH---HHH--H-HHHHTTSEEEEEEC
T ss_pred CCceEeEEEe--cCHHH---HHHHHHHcCCcEEEe-ccc---c-----c---cCHH---HHH--H-HHHhcCCeEEEEec
Confidence 4556677653 33443 589999999998873 333 1 0 1122 333 2 23333332333566
Q ss_pred CCCCHhhhccccCCCceEEEEe--CCC--CCh-------hhhhccCCCCCceEEEEcCCCCCCHHHHHHHHHcCCeEEec
Q 045537 193 PPMKIDGLLPLVSQSKLAFVAI--AEA--TPL-------VTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGL 261 (291)
Q Consensus 193 ~p~~l~~~l~~~~~~~~~lv~~--~~~--~~~-------~~~l~~~~~~~~i~lvIGPEGGfs~~Ei~~l~~~Gf~~vsL 261 (291)
+-.+++.+...+..-+..++.. ++. ... ...+.+....+..-+.|.-.||.+.+-+..+.++|+..+-.
T Consensus 116 p~T~~~~~~~~l~~id~vliM~V~pG~~Gq~f~~~~~~ki~~l~~~~~~~~~~~~I~vDGGIn~~~i~~l~~aGad~~V~ 195 (217)
T d2flia1 116 PGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVA 195 (217)
T ss_dssp TTSCGGGGGGGTTTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCCTTTHHHHHHHTCCEEEE
T ss_pred CCcchhHHHhHHhhcCEEEEEEEcCcccccccchhhHHHHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHCCCCEEEE
Confidence 7677777766655556555543 211 111 01111100011223557889999999999999999999999
Q ss_pred CCCccccch
Q 045537 262 GPHRLRVET 270 (291)
Q Consensus 262 G~rILRtET 270 (291)
|+-|++.+.
T Consensus 196 Gsaif~~~d 204 (217)
T d2flia1 196 GSYLFKASD 204 (217)
T ss_dssp SHHHHTSSC
T ss_pred chHHhCCCC
Confidence 999999876
No 26
>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.87 E-value=10 Score=25.11 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=25.1
Q ss_pred cCCCCCEEEEEeCCCCEEEEEEEEeeCCceEEE
Q 045537 69 RLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVV 101 (291)
Q Consensus 69 Rlk~Gd~i~v~dG~g~~~~a~I~~i~k~~~~v~ 101 (291)
+.++||.|.|..|.-.--.+.|+.++.+.+.+-
T Consensus 10 ~F~~GDhVkVi~G~~~g~tGlVV~v~~~~v~~~ 42 (62)
T d2do3a1 10 YFKMGDHVKVIAGRFEGDTGLIVRVEENFVILF 42 (62)
T ss_dssp SCCTTCEEEESSSTTTTCEEEEEEECSSCEEEE
T ss_pred ccCCCCeEEEeccEEcCccEEEEEEeCCEEEEE
Confidence 368999999999953333788899988777653
No 27
>d1b34a_ b.38.1.1 (A:) D1 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.50 E-value=22 Score=24.05 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=29.7
Q ss_pred HHHcccCCCCCEEEEEeCCCCEEEEEEEEeeCC
Q 045537 64 MTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRT 96 (291)
Q Consensus 64 l~kVLRlk~Gd~i~v~dG~g~~~~a~I~~i~k~ 96 (291)
+.+.|+.-.|..|.|--.+|..|.+++.+++..
T Consensus 2 lv~fL~~~~g~~V~VeLkng~~~~G~L~~~D~~ 34 (80)
T d1b34a_ 2 LVRFLMKLSHETVTIELKNGTQVHGTITGVDVS 34 (80)
T ss_dssp HHHHHHTCTTCEEEEEETTCCEEEEEEEEECTT
T ss_pred HHHHHHHcCCCEEEEEECCCCEEEEEEEEEcCC
Confidence 568899999999999888999999999999864
No 28
>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) {Deinococcus radiodurans [TaxId: 1299]}
Probab=37.75 E-value=10 Score=27.81 Aligned_cols=37 Identities=22% Similarity=0.185 Sum_probs=27.6
Q ss_pred HHcccCCCCCEEEEEeCCCCEEEEEEEEeeCCceEEE
Q 045537 65 TKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVV 101 (291)
Q Consensus 65 ~kVLRlk~Gd~i~v~dG~g~~~~a~I~~i~k~~~~v~ 101 (291)
.+=|+++.||.|.|+-|+..==.++|.++.++.-.+.
T Consensus 8 ~~K~kikkGD~V~VisGkdKGk~G~Vl~V~~~~~~Vi 44 (110)
T d2zjrr1 8 NDKLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVV 44 (110)
T ss_dssp TSCCSSCTTSEEECCSSSSTTCEEEEEEEETTTTEEE
T ss_pred cceeeeeCCCEEEEeecCCCCcceEEEEEECCCCEEE
Confidence 4558999999999999954333899999986544443
No 29
>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]}
Probab=35.05 E-value=12 Score=30.36 Aligned_cols=137 Identities=15% Similarity=0.179 Sum_probs=77.5
Q ss_pred CccceEEEEeeccCCCcHHHHHHHHHhcCccEEEEeecccccccccccccccccccchhhchhchhhhhcCCCCcceeEc
Q 045537 113 HTQWNVFAAFGTLKGGRADWLVEKCTELGAQSVTPLLTELHLQSRKIGDNGFLSCNFYYGFIANSAFVYGGQRLHEMVLN 192 (291)
Q Consensus 113 ~~~i~l~la~~l~K~~r~d~iiekatELGV~~I~P~~se~~~RS~~~~~~k~eRw~~~~kIi~~~eA~kQs~r~~lP~I~ 192 (291)
..++.++|.. -.+. ..+++..+.|++.|+.- .| -. . ...+. .++ ...++.|-..--.+.
T Consensus 60 ~~~~dvHLMv--~~P~---~~i~~~~~~g~~~i~~H-~E---~~----~--~~~~~---~~~---~~i~~~g~~~Gial~ 118 (221)
T d1tqja_ 60 KKTLDVHLMI--VEPE---KYVEDFAKAGADIISVH-VE---HN----A--SPHLH---RTL---CQIRELGKKAGAVLN 118 (221)
T ss_dssp CSEEEEEEES--SSGG---GTHHHHHHHTCSEEEEE-CS---TT----T--CTTHH---HHH---HHHHHTTCEEEEEEC
T ss_pred CcceeeeEEE--eCHH---HHHHHHhhccceEEEEe-ec---cc----c--ChhhH---HHH---HHHHHCCCCEEEEec
Confidence 3456777753 2343 46899999999999853 33 11 0 11122 222 222333332223466
Q ss_pred CCCCHhhhccccCCCceEEEEe--CC--CCChh----hhh---ccCCCCCceEEEEcCCCCCCHHHHHHHHHcCCeEEec
Q 045537 193 PPMKIDGLLPLVSQSKLAFVAI--AE--ATPLV----TAL---SSSRNESSGLIIVGPEGDFTEKEVNKIVEAGATAVGL 261 (291)
Q Consensus 193 ~p~~l~~~l~~~~~~~~~lv~~--~~--~~~~~----~~l---~~~~~~~~i~lvIGPEGGfs~~Ei~~l~~~Gf~~vsL 261 (291)
+-.+++.+...+..-+..++.. ++ +.+.. +-+ .........-+.|.-.||.+.+-+..+.++|+..+-.
T Consensus 119 p~T~~~~l~~~l~~~d~vlvM~V~pG~~GQ~f~~~~~~ki~~l~~~~~~~~~~~~I~VDGGIn~~~i~~l~~~Gad~~V~ 198 (221)
T d1tqja_ 119 PSTPLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVA 198 (221)
T ss_dssp TTCCGGGGTTTGGGCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCTTTTHHHHHHTCCEEEE
T ss_pred CCCcHHHHHHHHhhhcEEEEEEecCCCCCcccchhhHHHHHHHHhhhhccccceEEEEECCcCHHHHHHHHHcCCCEEEE
Confidence 6667777666555556666543 21 11111 111 1000000112345669999999999999999999999
Q ss_pred CCCccccch
Q 045537 262 GPHRLRVET 270 (291)
Q Consensus 262 G~rILRtET 270 (291)
|+-|++.+-
T Consensus 199 GS~if~~~d 207 (221)
T d1tqja_ 199 GSAVFNAPN 207 (221)
T ss_dssp SHHHHTSSC
T ss_pred ChHHhCCCC
Confidence 999998875
No 30
>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.04 E-value=37 Score=23.08 Aligned_cols=34 Identities=6% Similarity=0.032 Sum_probs=25.5
Q ss_pred cCCCCCEEEEEeCCCCEEEEEEEEee-CCceEEEe
Q 045537 69 RLSTNDRVELFNGKGGLIEGCIQRID-RTGLDVVA 102 (291)
Q Consensus 69 Rlk~Gd~i~v~dG~g~~~~a~I~~i~-k~~~~v~i 102 (291)
-.++|+...+--.+|..|+|+|.++. ++.+.|..
T Consensus 25 ~p~~G~~c~a~~~D~~wyRa~V~~~~~~~~~~V~~ 59 (90)
T d2hqxa1 25 APRRGEFCIAKFVDGEWYRARVEKVESPAKIHVFY 59 (90)
T ss_dssp CCCTTCEEEEECTTSCEEEEEEEEEEETTEEEEEE
T ss_pred CCCCCCEEEEEEcCCCEEEEEEEEeCCCCeEEEEE
Confidence 34789998776557889999999985 55666543
No 31
>d1jb9a1 b.43.4.2 (A:6-162) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Maize (Zea mays), root isoform [TaxId: 4577]}
Probab=33.91 E-value=12 Score=28.74 Aligned_cols=62 Identities=18% Similarity=0.234 Sum_probs=39.4
Q ss_pred cccccccceecccCccccCCccccccEEEeC---------CcEEE-EcchhhhHHHHcccCCCCCEEEEEeCCCC
Q 045537 20 SLKPLSLRAFSSSSSDYANQSRGGIPRFFSQ---------GGIVR-VEGDEFWHMTKVLRLSTNDRVELFNGKGG 84 (291)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~rff~~---------~~~v~-L~~~~~~Hl~kVLRlk~Gd~i~v~dG~g~ 84 (291)
.++|+..|.+|=+||-++..+....-.+-+. +..=. -.|--+.||.. +++||.|.|+...|.
T Consensus 79 ~~~p~~~R~YSIaSSp~~~~~~~~~~~~~V~~v~~~~~~~~~~~r~~~GvcS~yL~~---lk~Gd~V~i~gp~g~ 150 (157)
T d1jb9a1 79 PGAPQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCN---SKPGDKIQLTGPSGK 150 (157)
T ss_dssp TTCBCCCEEEEBCSCTTTTTTSSSEEEEEEECCCCBCTTTCCBCGGGSCHHHHHHHT---CCTTCEEEEEEEECS
T ss_pred cCccCCcCEEEecCCCcCCCCCCCEEEEEEEEeeccccccccCCcccCceeehhhcc---CCCcCEEEEEecCCC
Confidence 3789999999999998876543322222210 00000 13567788864 699999999876554
No 32
>d2vgba1 b.58.1.1 (A:160-261) Pyruvate kinase (PK) {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.17 E-value=22 Score=24.85 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=25.8
Q ss_pred CCCCCEEEEEeCCCCEEEEEEEEeeCCceEEEeeec
Q 045537 70 LSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALED 105 (291)
Q Consensus 70 lk~Gd~i~v~dG~g~~~~a~I~~i~k~~~~v~i~~~ 105 (291)
+++||.|.+=|| . ...+|.++++..+.+++...
T Consensus 52 v~~G~~IliDDG--~-i~l~V~~v~~~~i~~~v~~g 84 (102)
T d2vgba1 52 VPVGGRIYIDDG--L-ISLVVQKIGPEGLVTQVENG 84 (102)
T ss_dssp SCTTCEEEETTT--T-EEEEEEEECSSEEEEEEEEC
T ss_pred cCCCCEEEEcCC--c-eEEEEEecCCCEEEEEEEeC
Confidence 789999998543 3 46789999999988877653
No 33
>d1fnda1 b.43.4.2 (A:19-154) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=31.30 E-value=30 Score=25.61 Aligned_cols=61 Identities=20% Similarity=0.158 Sum_probs=36.4
Q ss_pred ccccccceecccCccccCCccccccEEEe------CCcEEEEcchhhhHHHHcccCCCCCEEEEEeCCCC
Q 045537 21 LKPLSLRAFSSSSSDYANQSRGGIPRFFS------QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGG 84 (291)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~rff~------~~~~v~L~~~~~~Hl~kVLRlk~Gd~i~v~dG~g~ 84 (291)
.+|.-.|+||-+|+......-...-++-+ .+..-.-.|--+.||.. +++||.|.+.-.-|+
T Consensus 69 ~~~~~~R~YSIaSsP~~~~~~~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~d---Lk~GD~V~v~GP~Gk 135 (136)
T d1fnda1 69 GKPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCD---LKPGAEVKLTGPVGK 135 (136)
T ss_dssp SSBCCCEEEECCSCTTCTTSSSCEEEEEEECCEEECTTSCEEECHHHHHHHT---CCTTCEEEEEEEECS
T ss_pred cccceeEEeecccCCcCCCCCCcEEEEEEEEeecccCCCcCCCceEehhhcc---CCCcCEEEEeCCCCC
Confidence 46777899988777554332222222222 11111235778899864 789999999766554
No 34
>d1wgsa_ b.34.13.3 (A:) Probable histone acetyltransferase MYST1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.88 E-value=25 Score=26.36 Aligned_cols=26 Identities=0% Similarity=-0.133 Sum_probs=22.7
Q ss_pred cCCCCCEEEEEeCCCCEEEEEEEEee
Q 045537 69 RLSTNDRVELFNGKGGLIEGCIQRID 94 (291)
Q Consensus 69 Rlk~Gd~i~v~dG~g~~~~a~I~~i~ 94 (291)
-+.+|+.+.|...+|..|.|+|+++.
T Consensus 12 ~~~vG~~~~v~~~dg~~~~AkVl~~r 37 (133)
T d1wgsa_ 12 TVEIGETYLCRRPDSTWHSAEVIQSR 37 (133)
T ss_dssp CCCTTSEEEEEETTTEEEEEEEEEEE
T ss_pred cEecCCEEEEEeCCCCEeEEEEEEEE
Confidence 37899999999988999999998763
No 35
>d2g50a1 b.58.1.1 (A:116-217) Pyruvate kinase (PK) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=28.75 E-value=28 Score=24.27 Aligned_cols=33 Identities=12% Similarity=0.015 Sum_probs=25.9
Q ss_pred CCCCCEEEEEeCCCCEEEEEEEEeeCCceEEEeeec
Q 045537 70 LSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALED 105 (291)
Q Consensus 70 lk~Gd~i~v~dG~g~~~~a~I~~i~k~~~~v~i~~~ 105 (291)
+++||.|.+-|| . ...+|.+++.+.+.+++...
T Consensus 52 v~~G~~IliDDG--~-i~l~V~~v~~~~v~~~v~~g 84 (102)
T d2g50a1 52 VDVGSKVYVDDG--L-ISLQVKQKGPDFLVTEVENG 84 (102)
T ss_dssp CCTTCEEEETTT--T-EEEEEEEEETTEEEEEEEEC
T ss_pred cCCCCEEEEcCC--E-EEEEEEeCCCceEEEEEEEC
Confidence 799999998554 3 47888899999888877653
No 36
>d1e0ta1 b.58.1.1 (A:70-167) Pyruvate kinase (PK) {Escherichia coli [TaxId: 562]}
Probab=28.59 E-value=25 Score=24.26 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=25.9
Q ss_pred CCCCCEEEEEeCCCCEEEEEEEEeeCCceEEEeeec
Q 045537 70 LSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALED 105 (291)
Q Consensus 70 lk~Gd~i~v~dG~g~~~~a~I~~i~k~~~~v~i~~~ 105 (291)
+++||.|.+=|| . -..+|.+++++.+.+++...
T Consensus 48 v~~Gd~IlidDG--~-i~l~V~~v~~~~i~~~v~~g 80 (98)
T d1e0ta1 48 LSVGNTVLVDDG--L-IGMEVTAIEGNKVICKVLNN 80 (98)
T ss_dssp CCTTCEEEETTT--T-EEEEEEEEETTEEEEEECSC
T ss_pred hcCCcEEEEcCC--c-eeEEEeeccCCEEEEEEEeC
Confidence 799999998544 3 46889999999988877653
No 37
>d1y71a1 b.34.16.1 (A:4-127) Kinase-associated protein B {Bacillus cereus [TaxId: 1396]}
Probab=27.07 E-value=62 Score=23.84 Aligned_cols=35 Identities=17% Similarity=0.061 Sum_probs=28.8
Q ss_pred CCCCEEEEEeCCCCEEEEEEEEeeCCceEEEeeecc
Q 045537 71 STNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDL 106 (291)
Q Consensus 71 k~Gd~i~v~dG~g~~~~a~I~~i~k~~~~v~i~~~~ 106 (291)
.+||.|..+-.. +.|.++|++..+....+++..-+
T Consensus 3 ~~g~~V~~~yKT-G~Yigei~e~~~~~~lVkVlaVl 37 (124)
T d1y71a1 3 EIGEIVTGIYKT-GKYIGEVTNSRPGSYVVKVLAVL 37 (124)
T ss_dssp CTTCEEEEEETT-EEEEEEEEEEETTEEEEEEEEEE
T ss_pred ccCcEEEEEEec-ceeEEEEEeecCCeEEEEEEEEe
Confidence 689999998865 47999999999988888776543
No 38
>d1d3ba_ b.38.1.1 (A:) D3 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.02 E-value=34 Score=22.42 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=27.8
Q ss_pred HcccCCCCCEEEEEeCCCCEEEEEEEEeeCC
Q 045537 66 KVLRLSTNDRVELFNGKGGLIEGCIQRIDRT 96 (291)
Q Consensus 66 kVLRlk~Gd~i~v~dG~g~~~~a~I~~i~k~ 96 (291)
++|+--.|..|.|--.+|..|.+++.+++..
T Consensus 5 ~~L~~~~g~~V~VeLkng~~~~G~L~~~D~~ 35 (72)
T d1d3ba_ 5 KVLHEAEGHIVTCETNTGEVYRGKLIEAEDN 35 (72)
T ss_dssp HHHHHTTTSEEEEEETTSCEEEEEEEEECTT
T ss_pred HHHHhcCCCEEEEEECCCeEEEEEEEEEcCC
Confidence 6788889999999888999999999999864
No 39
>d1dm9a_ d.66.1.3 (A:) Heat shock protein 15 kD {Escherichia coli [TaxId: 562]}
Probab=26.37 E-value=14 Score=26.52 Aligned_cols=44 Identities=18% Similarity=0.185 Sum_probs=31.8
Q ss_pred CCcEEEEcchhhhHHHHcccCCCCCEEEEEeCCCCEEEEEEEEeeCCc
Q 045537 50 QGGIVRVEGDEFWHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTG 97 (291)
Q Consensus 50 ~~~~v~L~~~~~~Hl~kVLRlk~Gd~i~v~dG~g~~~~a~I~~i~k~~ 97 (291)
.++.|.++|...+ .--.+++||.|.+.-+ +..+.-+|..+.++.
T Consensus 28 ~~G~V~vNg~~vK---ps~~vk~GDvI~i~~~-~~~~~i~V~~l~~~R 71 (104)
T d1dm9a_ 28 EGGKVHYNGQRSK---PSKIVELNATLTLRQG-NDERTVIVKAITEQR 71 (104)
T ss_dssp HTTCEEETTEECC---TTCBCCTTCEEEEEET-TEEEEEEECEEESCC
T ss_pred HcCCeeeCCeecc---ccccCCCCCEEEEEeC-CeEEEEEEEEccccc
Confidence 5678899886543 3556899999999776 556677777665543
No 40
>d1vpza_ b.151.1.1 (A:) Carbon storage regulator homolog, CsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=25.41 E-value=20 Score=23.15 Aligned_cols=38 Identities=8% Similarity=0.122 Sum_probs=28.2
Q ss_pred hHHHHcccCCCCCEEEEEeCCCCEEEEEEEEeeCCceEEEeee
Q 045537 62 WHMTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALE 104 (291)
Q Consensus 62 ~Hl~kVLRlk~Gd~i~v~dG~g~~~~a~I~~i~k~~~~v~i~~ 104 (291)
||+ =||--|+|+.|.+.|+ ...+|.+++.+.+.+-+..
T Consensus 1 ~~M-LvLtRk~gEsI~Igd~----I~i~V~~i~g~~VrlGI~A 38 (57)
T d1vpza_ 1 HHM-LILTRRVGETLMVGDD----VTVTVLGVKGNQVRIGVNA 38 (57)
T ss_dssp CCC-EEEEEETTCEEEETTT----EEEEEEEEETTEEEEEEEE
T ss_pred CCe-EEEeeeCCCEEEECCC----EEEEEEEEcCCEEEEEEEC
Confidence 455 3788899999999442 5788889998887765543
No 41
>d1oz2a3 b.34.9.3 (A:422-527) Lethal(3)malignant brain tumor-like protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.13 E-value=67 Score=22.64 Aligned_cols=35 Identities=6% Similarity=0.098 Sum_probs=28.3
Q ss_pred cCCCCCEEEEEeC--CCCEEEEEEEEeeCCceEEEee
Q 045537 69 RLSTNDRVELFNG--KGGLIEGCIQRIDRTGLDVVAL 103 (291)
Q Consensus 69 Rlk~Gd~i~v~dG--~g~~~~a~I~~i~k~~~~v~i~ 103 (291)
..++|.++++.|. .+..|-|+|+++....+.|+..
T Consensus 27 ~F~~GmklEavd~~~~~~i~vAtV~~v~g~~l~v~~D 63 (106)
T d1oz2a3 27 SFLVNMKLEAVDRRNPALIRVASVEDVEDHRIKIHFD 63 (106)
T ss_dssp CCCTTCEEEEECSSSTTCEEEEEEEEECSSEEEEEET
T ss_pred ccccCCEEEEEcCCCCceEEEEEEEEEECCEEEEEEC
Confidence 4688999999995 4678999999998777777654
No 42
>d2f5ka1 b.34.13.3 (A:6-88) Mortality factor 4-like protein 1, MRG15 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.98 E-value=44 Score=22.86 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=20.8
Q ss_pred cCCCCCEEEEEeCCCCEEEEEEEEee
Q 045537 69 RLSTNDRVELFNGKGGLIEGCIQRID 94 (291)
Q Consensus 69 Rlk~Gd~i~v~dG~g~~~~a~I~~i~ 94 (291)
+..+||.|..+-| +..|.|+|.++.
T Consensus 5 ~f~~ge~Vlc~~~-~~lYeAkil~~~ 29 (83)
T d2f5ka1 5 KFQEGERVLCFHG-PLLYEAKCVKVA 29 (83)
T ss_dssp SCCTTCEEEEESS-SSEEEEEEEEEE
T ss_pred ccCCCCEEEEEEC-CeeEEeEEEEEE
Confidence 3578999999876 789999998764
No 43
>d1o9ya_ b.139.1.1 (A:) Structural protein HrcQ2, C-terminal domain {Pseudomonas syringae [TaxId: 317]}
Probab=24.76 E-value=73 Score=20.33 Aligned_cols=32 Identities=19% Similarity=0.388 Sum_probs=18.6
Q ss_pred HHHcccCCCCCEEEE----------EeCCCCEEEEEEEEeeC
Q 045537 64 MTKVLRLSTNDRVEL----------FNGKGGLIEGCIQRIDR 95 (291)
Q Consensus 64 l~kVLRlk~Gd~i~v----------~dG~g~~~~a~I~~i~k 95 (291)
+..++++++||.+.+ .-++-..+.|++..++.
T Consensus 20 l~el~~L~~G~vl~l~~~~~~~V~l~v~g~~i~~G~l~~~~~ 61 (71)
T d1o9ya_ 20 LAELRRLDAGTILEVTGISPGHATLCHGEQVVAEGELVDVEG 61 (71)
T ss_dssp HHHHHTCCTTCEEEECSSCTTEEEEEETTEEEEEEEEEEETT
T ss_pred HHHHhccCCCCEEEeCCCCCCCEEEEECCEEEEEEEEEEECC
Confidence 345677777777655 33334456666665543
No 44
>d1sf8a_ d.271.1.1 (A:) Chaperone protein HtpG {Escherichia coli [TaxId: 562]}
Probab=24.59 E-value=24 Score=25.51 Aligned_cols=33 Identities=12% Similarity=0.079 Sum_probs=23.5
Q ss_pred eEEEEcCCCCCCHHHHHHHHHcCCeEEecCCCcc
Q 045537 233 GLIIVGPEGDFTEKEVNKIVEAGATAVGLGPHRL 266 (291)
Q Consensus 233 i~lvIGPEGGfs~~Ei~~l~~~Gf~~vsLG~rIL 266 (291)
-++++++|||+|..=...++..|- .....++||
T Consensus 27 P~~lv~~~~~~s~~M~kimk~~~~-~~~~~k~iL 59 (115)
T d1sf8a_ 27 PAIVSTDADEMSTQMAKLFAAAGQ-KVPEVKYIF 59 (115)
T ss_dssp CEEEECCTTSCCHHHHHHHHTTTS-CCCCCCCEE
T ss_pred ceeeecCCcchHHHHHHHHHHhcc-cccccccee
Confidence 347899999999996666777663 345556665
No 45
>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.89 E-value=41 Score=21.93 Aligned_cols=26 Identities=35% Similarity=0.372 Sum_probs=20.4
Q ss_pred HcccCCCCCEEEEEeC--CCCEEEEEEE
Q 045537 66 KVLRLSTNDRVELFNG--KGGLIEGCIQ 91 (291)
Q Consensus 66 kVLRlk~Gd~i~v~dG--~g~~~~a~I~ 91 (291)
.=|-++.||.|.|.+. +.+-|.+++.
T Consensus 25 ~eLsf~~GD~i~Vl~~~~~~gWw~G~~~ 52 (69)
T d1gcqc_ 25 PFLRLNPGDIVELTKAEAEHNWWEGRNT 52 (69)
T ss_dssp CBCCBCTTCEEEEEECCTTCSEEEEEET
T ss_pred CEeeEcCCCEEEEEEEecCCCEEEEEEC
Confidence 3478999999999864 4578888873
No 46
>d1h641_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Probab=21.68 E-value=51 Score=21.23 Aligned_cols=31 Identities=23% Similarity=0.179 Sum_probs=27.0
Q ss_pred HcccCCCCCEEEEEeCCCCEEEEEEEEeeCC
Q 045537 66 KVLRLSTNDRVELFNGKGGLIEGCIQRIDRT 96 (291)
Q Consensus 66 kVLRlk~Gd~i~v~dG~g~~~~a~I~~i~k~ 96 (291)
++|+.-.|..|.|---+|..|.+++..+|..
T Consensus 5 ~~L~~~~~~~V~V~lk~g~~~~G~L~~~D~~ 35 (71)
T d1h641_ 5 DVIHRSLDKDVLVILKKGFEFRGRLIGYDIH 35 (71)
T ss_dssp HHHHTTTTSEEEEEETTSEEEEEEEEEECTT
T ss_pred HHHHHhCCCEEEEEEcCCCEEEEEEEEECCC
Confidence 5677888999999888999999999999864
No 47
>d2ix0a3 b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]}
Probab=21.64 E-value=37 Score=23.17 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=20.8
Q ss_pred CCCCEEEEEEEEeeCCceEEEeee
Q 045537 81 GKGGLIEGCIQRIDRTGLDVVALE 104 (291)
Q Consensus 81 G~g~~~~a~I~~i~k~~~~v~i~~ 104 (291)
|.+..|.|+|+.+.+..+.+++.+
T Consensus 2 ~~~~~F~g~Is~v~~~GifV~L~e 25 (87)
T d2ix0a3 2 GTDTRFAAEIVDISRGGMRVRLVD 25 (87)
T ss_dssp TSCCCEEEEEEEEETTEEEEEETT
T ss_pred CCCCEEEEEEEEEEcCeEEEEEec
Confidence 678899999999999999888743
Done!