BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045542
(269 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 91/157 (57%), Gaps = 6/157 (3%)
Query: 6 EIENISRETIKPSSPTPNHLRNFKLSFLDQIAPVMYTPIVLFYSQNGDSDHPGEAAKMCQ 65
++E +S E I PSSPTP L+ +K+S LDQ+ + P +LFY DS+ + A+ Q
Sbjct: 4 QMEKVSEELILPSSPTPQSLKCYKISHLDQLLLTCHIPFILFYPNPLDSNL--DPAQTSQ 61
Query: 66 CLKTSLSKILTLFYPFAGRFKDHASIECNDDGADFLEAQVICRLSD-IPRQPNANNLRTF 124
LK SLSK+LT FYP AGR ++S++CND G F+EA+V +LS I L +
Sbjct: 62 HLKQSLSKVLTHFYPLAGRINVNSSVDCNDSGVPFVEARVQAQLSQAIQNVVELEKLDQY 121
Query: 125 LPIEIE---SMEAVTNILLCVQASFFECGGMPIEVQI 158
LP +E ++ L V+ SFFECGG I V +
Sbjct: 122 LPSAAYPGGKIEVNEDVPLAVKISFFECGGTAIGVNL 158
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 77/163 (47%), Gaps = 11/163 (6%)
Query: 3 GELEIENISRETIKPSSPTPNHLRNFKLSFLDQIAPVMYTPIVLFYSQNGDSDHPGEAAK 62
G ++IE ++P+ TP RN S +D + P +TP V FY G S+
Sbjct: 4 GSMKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTGSSNF-----F 56
Query: 63 MCQCLKTSLSKILTLFYPFAGRFK----DHASIECNDDGADFLEAQVICRLSDIPRQPNA 118
+ LK +LS+ L FYP AGR K IECN +G F+EA+ + D
Sbjct: 57 DAKVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPT 116
Query: 119 NNLRTFLPIEIESMEAVTNILLCVQASFFECGGMPIEVQIIPH 161
LR +P S + LL +Q ++F+CGG+ + V + H
Sbjct: 117 LELRRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHH 159
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 77/163 (47%), Gaps = 11/163 (6%)
Query: 3 GELEIENISRETIKPSSPTPNHLRNFKLSFLDQIAPVMYTPIVLFYSQNGDSDHPGEAAK 62
G ++IE ++P+ TP RN S +D + P +TP V FY G S+
Sbjct: 1 GAMKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTGSSNF-----F 53
Query: 63 MCQCLKTSLSKILTLFYPFAGRFK----DHASIECNDDGADFLEAQVICRLSDIPRQPNA 118
+ LK +LS+ L FYP AGR K IECN +G F+EA+ + D
Sbjct: 54 DAKVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPT 113
Query: 119 NNLRTFLPIEIESMEAVTNILLCVQASFFECGGMPIEVQIIPH 161
LR +P S + LL +Q ++F+CGG+ + V + H
Sbjct: 114 LELRRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHH 156
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 76/163 (46%), Gaps = 11/163 (6%)
Query: 3 GELEIENISRETIKPSSPTPNHLRNFKLSFLDQIAPVMYTPIVLFYSQNGDSDHPGEAAK 62
G ++IE ++P+ TP RN S +D + P +TP V FY G S+
Sbjct: 4 GSMKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTGSSNF-----F 56
Query: 63 MCQCLKTSLSKILTLFYPFAGRFK----DHASIECNDDGADFLEAQVICRLSDIPRQPNA 118
+ LK +LS+ L FYP AGR K IECN +G F+EA+ + D
Sbjct: 57 DAKVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPT 116
Query: 119 NNLRTFLPIEIESMEAVTNILLCVQASFFECGGMPIEVQIIPH 161
LR +P S + LL +Q ++F+ GG+ + V + H
Sbjct: 117 LELRRLIPAVDYSQGISSYALLVLQVTYFKXGGVSLGVGMRHH 159
>pdb|1JMY|A Chain A, Truncated Recombinant Human Bile Salt Stimulated Lipase
Length = 522
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 58 GEAAKMCQCLKTSLSKILTLFY--PFAG 83
G+AA+M QCLK + + LTL Y P AG
Sbjct: 249 GDAARMAQCLKVTDPRALTLAYKVPLAG 276
>pdb|1F6W|A Chain A, Structure Of The Catalytic Domain Of Human Bile Salt
Activated Lipase
Length = 533
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 58 GEAAKMCQCLKTSLSKILTLFY--PFAG 83
G+AA+M QCLK + + LTL Y P AG
Sbjct: 249 GDAARMAQCLKVTDPRALTLAYKVPLAG 276
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,614,403
Number of Sequences: 62578
Number of extensions: 223875
Number of successful extensions: 653
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 637
Number of HSP's gapped (non-prelim): 6
length of query: 269
length of database: 14,973,337
effective HSP length: 97
effective length of query: 172
effective length of database: 8,903,271
effective search space: 1531362612
effective search space used: 1531362612
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.3 bits)