BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045543
(239 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 187 bits (476), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 116/324 (35%), Positives = 157/324 (48%), Gaps = 87/324 (26%)
Query: 1 MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRR---------SLSSAGDDR 51
+ + EI+AKAGP A++S EI +Q+P+ NP+A VMLDR+LR S+ + D +
Sbjct: 42 LDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVRTQQDGK 101
Query: 52 --RLQRLAPVAKYVLH----------------------------------------YGIG 69
RL LA VAKY++ YG+
Sbjct: 102 VQRLYGLATVAKYLVKNEDGVSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMT 161
Query: 70 DYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCG--------- 120
+E+ G D RFN+V N M H++I M +IL+ Y GFE +K LVDVGGG G
Sbjct: 162 AFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSK 221
Query: 121 -------------------------KCGWKMFQKILNGDAILMKLILRNWDDEHCLSLLK 155
G MF I DA+ MK I +W DEHCL LK
Sbjct: 222 YPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLK 281
Query: 156 NCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALT 215
NCYEA+P NGK+I+ + V P+++ AT+ ID+IML G KERT++E+ +A
Sbjct: 282 NCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKG 341
Query: 216 AKNGFKGVNYESFVCNFYIMEFIK 239
A GF+G N YIMEF+K
Sbjct: 342 A--GFQGFKVHCNAFNTYIMEFLK 363
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 169 bits (428), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 110/326 (33%), Positives = 150/326 (46%), Gaps = 90/326 (27%)
Query: 1 MGVFEIMAKA-GPRAKLSAAEIEAQMPSHNPNAAVMLDRVLR------------RSLSSA 47
+ V EIMAK+ P +S AEI AQ+P+ NP A VMLDRVLR R L S
Sbjct: 44 LDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPS- 102
Query: 48 GDDRRLQRLAPVAKYVLH----------------------------------------YG 67
G RL LAPV K++ YG
Sbjct: 103 GKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYG 162
Query: 68 IGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGKC----- 122
+ +++ G D R N+V N M S+++I M +IL+ Y GFE + +VDVGGG G
Sbjct: 163 MNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIV 222
Query: 123 -----------------------------GWKMFQKILNGDAILMKLILRNWDDEHCLSL 153
G MF + GDAI +K I +W DEHCL L
Sbjct: 223 AKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKL 282
Query: 154 LKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMA 213
LKNCY A+P +GK+I+ + P+ + AT+ D +ML G KERT++E+ +A
Sbjct: 283 LKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALA 342
Query: 214 LTAKNGFKGVNYESFVCNFYIMEFIK 239
+ + GF+G S N Y+MEF+K
Sbjct: 343 MAS--GFRGFKVASCAFNTYVMEFLK 366
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 160 bits (406), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 102/325 (31%), Positives = 151/325 (46%), Gaps = 89/325 (27%)
Query: 1 MGVFEIMAKAGPRAKLSAAEIEAQMPSH-NPNAAVMLDRVLR--------RSLSSAGDDR 51
+G+ EI+ AG ++ L+ E+ A++PS NP A M+DR+LR L G D
Sbjct: 43 LGLLEILVAAGGKS-LTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDG 101
Query: 52 RLQR---LAPVAKYVLH----------------------------------------YGI 68
RL R APV K++ YG+
Sbjct: 102 RLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGM 161
Query: 69 GDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGKC------ 122
+E+ G D RFN V N M +H+ I+ ++L+ Y GFE + LVDVGGG G
Sbjct: 162 SAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAA 221
Query: 123 ----------------------------GWKMFQKILNGDAILMKLILRNWDDEHCLSLL 154
G MF+++ +GD ILMK IL +W D+HC +LL
Sbjct: 222 HYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLL 281
Query: 155 KNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMAL 214
KNCY+A+P +GK++++ V PEA P+++ +D+IML G +ER ++E+ +A
Sbjct: 282 KNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALAR 341
Query: 215 TAKNGFKGVNYESFVCNFYIMEFIK 239
A GF GV N + +EF K
Sbjct: 342 GA--GFTGVKSTYIYANAWAIEFTK 364
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 144/330 (43%), Gaps = 95/330 (28%)
Query: 1 MGVFEIMAKAGPR-AKLSAAEIEAQMPSHNPNAAV--MLDRVLR------------RSLS 45
+ +FEI+AKA P A +S +EI +++P+ ++ + LDR+LR R++
Sbjct: 47 LNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIE 106
Query: 46 SAGDDRRLQRLAPVAKYVLH---------------------------------------- 65
G +R + L+ V KY++
Sbjct: 107 DGGAER-VYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKN 165
Query: 66 -YGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGK--- 121
+G+ YE G D + N++ N +M+ + M R+L+ Y GFE I LVDVGGG G+
Sbjct: 166 VHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLE 225
Query: 122 -------------------------------CGWKMFQKILNGDAILMKLILRNWDDEHC 150
G MF + GDA+++K + NW DE C
Sbjct: 226 LIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKC 285
Query: 151 LSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYY 210
+ L NC++A+ NGK+II++ P + ++ S++D +M + + G +ERT+++Y
Sbjct: 286 IEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGG-RERTEKQYE 344
Query: 211 GMALTAKNGFKGVNYESFVCN-FYIMEFIK 239
L+ +GF N +MEF K
Sbjct: 345 --KLSKLSGFSKFQVACRAFNSLGVMEFYK 372
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 94.0 bits (232), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 121/299 (40%), Gaps = 92/299 (30%)
Query: 1 MGVFEIMAKAGPRAKL-SAAEIEAQMPSHN-----PN---------AAVMLDRVLRRSLS 45
+ +FEI+AKA P S +EI +++P+ PN A+ + R++
Sbjct: 47 LNLFEIIAKATPPGAFXSPSEIASKLPASTQHSDLPNRLDRXLRLLASYSVLTSTTRTIE 106
Query: 46 SAGDDRRLQRLAPVAKYVLH---------------------------------------- 65
G +R + L+ V KY++
Sbjct: 107 DGGAER-VYGLSXVGKYLVPDESRGYLASFTTFLCYPALLQVWXNFKEAVVDEDIDLFKN 165
Query: 66 -YGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGK--- 121
+G+ YE G D + N++ N + + + R L+ Y GFE I LVDVGGG G+
Sbjct: 166 VHGVTKYEFXGKDKKXNQIFNKSXVDVCATEXKRXLEIYTGFEGISTLVDVGGGSGRNLE 225
Query: 122 -------------------------------CGWKMFQKILNGDAILMKLILRNWDDEHC 150
G F + GDA ++K + NW DE C
Sbjct: 226 LIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDXFASVPQGDAXILKAVCHNWSDEKC 285
Query: 151 LSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEY 209
+ L NC++A+ NGK+II++ P + ++ S++D + + + G +ERT+++Y
Sbjct: 286 IEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLXFITVGG-RERTEKQY 343
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 116/260 (44%), Gaps = 47/260 (18%)
Query: 2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLS-SAGDDRRLQRLAPVA 60
G FEI+ K L+ A E + + A M++ VL +LS S + ++ +
Sbjct: 82 GFFEIITKEEESYALTVAS-ELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDLT 140
Query: 61 KYVLHYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCG 120
+ + G G ++ + +N N AM S + ++ + D F+ ++ +VDVGGG G
Sbjct: 141 LFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTG 200
Query: 121 -------------KC---------------------GWKMFQKILNGDAILMKLILRNWD 146
KC G MF I N DA+L+K IL NW
Sbjct: 201 TTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWT 260
Query: 147 DEHCLSLLKNCYEAIPGN---GKIIIIDSTTVVIPEATPATREASSIDIIMLMQLS--GE 201
D+ CL +LK C EA+ + GK+ IID ++ + + + I ++M + ++
Sbjct: 261 DKDCLRILKKCKEAVTNDGKRGKVTIID----MVIDKKKDENQVTQIKLLMDVNMACLNG 316
Query: 202 KERTKQEYYGMALTAKNGFK 221
KER ++E+ + + A GF+
Sbjct: 317 KERNEEEWKKLFIEA--GFQ 334
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 60/114 (52%), Gaps = 13/114 (11%)
Query: 122 CGWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEAIP---GNGKIIIIDSTTVVIP 178
G MF+ I + DA+L+K +L +W+DE L +LKN EAI +GK+IIID +
Sbjct: 240 VGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETS 299
Query: 179 EATPATREASSIDIIMLMQLSGEKERTKQEYYGM---------ALTAKNGFKGV 223
+ T D++ML G KERTKQE+ + +T +GFK +
Sbjct: 300 DDRGLTELQLDYDLVMLTMFLG-KERTKQEWEKLIYDAGFSSYKITPISGFKSL 352
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 107/237 (45%), Gaps = 46/237 (19%)
Query: 33 AVMLDRVLRRSLSSAGDD-RRLQRLAPVAKYVLHYGIGDYEHAGLDSRFNEVLNTAMLSH 91
A M++ VL +LS++ + ++ + + ++ G +E + +N + N A+ S
Sbjct: 117 APMVECVLDPTLSTSFHNLKKWVYEEDLTLFAVNLGCDLWEFLNKNPEYNTLYNDALASD 176
Query: 92 NSIVMNRILDYYKGFEKIKQLVDVGGG-----------------------------CGK- 121
+ ++ + D FE ++ +VDVGGG CG
Sbjct: 177 SKMINLAMKDCNLVFEGLESIVDVGGGNGTTGKIICETFPKLTCVVFDRPKVVENLCGSN 236
Query: 122 ----CGWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGN---GKIIIIDSTT 174
G MF + DA+L+K +L +W D+ C+ +LK C EA+ + GK+I+ID
Sbjct: 237 NLTYVGGDMFISVPKADAVLLKAVLHDWTDKDCIKILKKCKEAVTSDGKRGKVIVID--- 293
Query: 175 VVIPEATPATREASSIDIIMLMQLS--GEKERTKQEYYGMALTAKNGFKGVNYESFV 229
+VI E + + I ++M + +S KER ++E+ + + A GF+ F
Sbjct: 294 MVINEKKDE-NQLTQIKLLMNVTISCVNGKERNEEEWKKLFIEA--GFQDYKISPFT 347
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 60/114 (52%), Gaps = 13/114 (11%)
Query: 122 CGWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEAIP---GNGKIIIIDSTTVVIP 178
G MF+ I + DA+L+K +L +W+DE L +LKN EAI +GK+IIID +
Sbjct: 241 VGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETS 300
Query: 179 EATPATREASSIDIIMLMQLSGEKERTKQEYYGM---------ALTAKNGFKGV 223
+ T D++ML G KERTKQE+ + +T +GFK +
Sbjct: 301 DDRGLTELQLDYDLVMLTMFLG-KERTKQEWEKLIYDAGFSSYKITPISGFKSL 353
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 60/114 (52%), Gaps = 13/114 (11%)
Query: 122 CGWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEAIP---GNGKIIIIDSTTVVIP 178
G MF+ I + DA+L+K +L +W+DE L +LKN EAI +GK+IIID +
Sbjct: 237 VGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETS 296
Query: 179 EATPATREASSIDIIMLMQLSGEKERTKQEYYGM---------ALTAKNGFKGV 223
+ T D++ML G KERTKQE+ + +T +GFK +
Sbjct: 297 DDRGLTELQLDYDLVMLTMFLG-KERTKQEWEKLIYDAGFSSYKITPISGFKSL 349
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 109/260 (41%), Gaps = 47/260 (18%)
Query: 2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSSAGDDRRLQRL---AP 58
G FEI+ K L+ A E + + A ++ VL +LS G L++
Sbjct: 82 GFFEIITKEEESYALTVAS-ELLVRGSDLCLAPXVECVLDPTLS--GSYHELKKWIYEED 138
Query: 59 VAKYVLHYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGG 118
+ + + G G ++ + +N N A S + ++ + D F+ ++ +VDVGGG
Sbjct: 139 LTLFGVTLGSGFWDFLDKNPEYNTSFNDAXASDSKLINLALRDCDFVFDGLESIVDVGGG 198
Query: 119 CG-------------KC---------------------GWKMFQKILNGDAILMKLILRN 144
G KC G F I N DA+L+K IL N
Sbjct: 199 TGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDXFTSIPNADAVLLKYILHN 258
Query: 145 WDDEHCLSLLKNCYEAIPGN---GKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGE 201
W D+ CL +LK C EA+ + GK+ IID + T+ D + L+G
Sbjct: 259 WTDKDCLRILKKCKEAVTNDGKRGKVTIIDXVIDKKKDENQVTQIKLLXD-VNXACLNG- 316
Query: 202 KERTKQEYYGMALTAKNGFK 221
KER ++E+ + + A GF+
Sbjct: 317 KERNEEEWKKLFIEA--GFQ 334
>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
pdb|3LST|B Chain B, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
Length = 348
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 114 DVGGGCGKCGWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDST 173
DV G +++ + D ++K IL NW DE + +L NC P +G++++ID+
Sbjct: 229 DVAGRWKVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVXPAHGRVLVIDA- 287
Query: 174 TVVIPEATPATREASSIDIIMLMQLSGEKERTKQE 208
V+PE A ++ D L +G+ ERT E
Sbjct: 288 --VVPEGNDA-HQSKEXDFXXLAARTGQ-ERTAAE 318
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 131 LNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSI 190
+ D +L+ +L NW DE L++L+ C A+ G+++++D V E A R S++
Sbjct: 247 VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADV---EGDGADRFFSTL 303
Query: 191 DIIMLMQLSGEKERTKQEYYGMALTAKNGF---KGVNYESFVCNFYIMEF 237
+ ++ G + RT+ E +A +A + + +F I+EF
Sbjct: 304 LDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEF 353
>pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDS|B Chain B, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDU|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With Sinefungin (Sfg)
Length = 374
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 131 LNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSI 190
+ D +L+ +L NW DE L++L+ C A+ G+++++D V E A R S++
Sbjct: 247 VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADV---EGDGADRFFSTL 303
Query: 191 DIIMLMQLSGEKERTKQEYYGMALTAKNGF---KGVNYESFVCNFYIMEF 237
+ + G + RT+ E +A +A + + +F I+EF
Sbjct: 304 LDLRXLTFXGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEF 353
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 8/99 (8%)
Query: 123 GWKMFQKI-LNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEAT 181
G M Q++ NGD L+ I+ + D+ L LL NC EA+ G+G++++I+ T+ E +
Sbjct: 223 GGDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIER-TISASEPS 281
Query: 182 PATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGF 220
P + D+ + M +G + RT +E + L + GF
Sbjct: 282 PMS---VLWDVHLFMACAG-RHRTTEEV--VDLLGRGGF 314
>pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW2|B Chain B, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW3|A Chain A, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
pdb|1TW3|B Chain B, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
Length = 360
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 132 NGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSID 191
DAI++ +L NW D + +L C EA+ G+I+I + + + + +D
Sbjct: 249 KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDL---HENSFNEQFTELD 305
Query: 192 IIMLMQLSGEKERTKQEYYGMALTA 216
+ ML+ L G RT++++ G+A +A
Sbjct: 306 LRMLVFLGGAL-RTREKWDGLAASA 329
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 68/142 (47%), Gaps = 12/142 (8%)
Query: 84 LNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGKC---GWKMFQKILNG-DAILMK 139
L A+L + +L+ E+ ++L+ G +C F+ I +G D L+K
Sbjct: 216 LXAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIK 275
Query: 140 LILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLS 199
+L +WDD+ + +L+ A + ++++ID+ P A+ + ++L+ L
Sbjct: 276 HVLHDWDDDDVVRILRRIATAXKPDSRLLVIDNLIDERPAAS------TLFVDLLLLVLV 329
Query: 200 GEKERTKQEYYGMALTAKNGFK 221
G ER++ E+ AL K+G +
Sbjct: 330 GGAERSESEF--AALLEKSGLR 349
>pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I53|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I58|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I58|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I5U|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I5U|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I64|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
pdb|3I64|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
Length = 332
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 137 LMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREA-SSIDIIML 195
++ +L +WDD +++L+ C EA G +++I EA A + +D+ ML
Sbjct: 240 VLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVI--------EAVAGDEHAGTGMDLRML 291
Query: 196 MQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVC 230
G KER+ E +A A + + S+V
Sbjct: 292 TYFGG-KERSLAELGELAAQAGLAVRAAHPISYVS 325
>pdb|3O1A|A Chain A, Structure Of Oxye (Cyp165d3), A Cytochrome P450 Involved
In Teicoplanin Biosynthesis
Length = 417
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 40 LRRSLSSAGDDRRLQRLAPVAKYVLHYGIGDYEHAGLDSRF 80
LRR+++ A RR++RL P + ++ + D+E G F
Sbjct: 123 LRRTVAPAYSARRMERLRPRIEEIVEECLDDFESVGAPVDF 163
>pdb|3OO3|A Chain A, Crystal Structure Of The Orf6 (Cyp165d3) Monooxygenase
Involved In Teicoplanin Biosynthesis
Length = 384
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 40 LRRSLSSAGDDRRLQRLAPVAKYVLHYGIGDYEHAGLDSRF 80
LRR+++ A RR++RL P + ++ + D+E G F
Sbjct: 90 LRRTVAPAYSARRMERLRPRIEEIVEECLDDFESVGAPVDF 130
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 64 LHYGIGDYEHAGLDSRFN--EVLNTAML 89
LHY G Y H GL FN E+ N A+L
Sbjct: 356 LHYHSGIYHHTGLSDPFNPFELTNHAVL 383
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,927,812
Number of Sequences: 62578
Number of extensions: 270944
Number of successful extensions: 689
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 649
Number of HSP's gapped (non-prelim): 39
length of query: 239
length of database: 14,973,337
effective HSP length: 96
effective length of query: 143
effective length of database: 8,965,849
effective search space: 1282116407
effective search space used: 1282116407
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)