Query 045543
Match_columns 239
No_of_seqs 247 out of 1418
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 04:54:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045543.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045543hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a6d_A Hydroxyindole O-methylt 100.0 2.1E-48 7.2E-53 343.6 19.1 226 1-239 31-345 (353)
2 3p9c_A Caffeic acid O-methyltr 100.0 4E-43 1.4E-47 311.0 18.4 236 1-239 43-364 (364)
3 3reo_A (ISO)eugenol O-methyltr 100.0 7E-43 2.4E-47 309.9 19.7 237 1-239 44-366 (368)
4 3lst_A CALO1 methyltransferase 100.0 6.4E-41 2.2E-45 294.9 17.1 223 1-239 45-347 (348)
5 3gwz_A MMCR; methyltransferase 100.0 2.3E-40 7.9E-45 293.7 15.7 222 1-239 61-368 (369)
6 3i53_A O-methyltransferase; CO 100.0 2.4E-40 8.2E-45 289.2 13.6 219 1-239 28-331 (332)
7 2ip2_A Probable phenazine-spec 100.0 7.6E-39 2.6E-43 279.6 17.9 221 1-239 31-333 (334)
8 1zg3_A Isoflavanone 4'-O-methy 100.0 1.4E-38 4.6E-43 281.0 14.6 232 1-239 33-358 (358)
9 1fp1_D Isoliquiritigenin 2'-O- 100.0 1.1E-37 3.9E-42 276.5 15.8 236 1-239 47-372 (372)
10 1fp2_A Isoflavone O-methyltran 100.0 1.9E-37 6.5E-42 273.1 15.0 230 1-239 39-352 (352)
11 3dp7_A SAM-dependent methyltra 100.0 8.4E-37 2.9E-41 270.2 16.2 226 1-239 38-354 (363)
12 3mcz_A O-methyltransferase; ad 100.0 5.8E-35 2E-39 256.7 18.5 221 1-239 47-348 (352)
13 1tw3_A COMT, carminomycin 4-O- 100.0 1.7E-35 6E-40 260.8 14.1 223 1-239 42-355 (360)
14 1qzz_A RDMB, aclacinomycin-10- 100.0 2E-35 6.9E-40 261.5 13.2 223 1-239 39-355 (374)
15 1x19_A CRTF-related protein; m 100.0 2.9E-34 9.9E-39 253.3 20.0 220 1-239 54-358 (359)
16 2r3s_A Uncharacterized protein 100.0 3.1E-34 1.1E-38 250.0 17.2 224 1-238 29-333 (335)
17 4gek_A TRNA (CMO5U34)-methyltr 99.6 8.4E-15 2.9E-19 123.6 12.0 130 106-239 68-256 (261)
18 3dtn_A Putative methyltransfer 99.6 3.7E-14 1.3E-18 116.6 13.1 139 97-239 33-225 (234)
19 3hnr_A Probable methyltransfer 99.5 2.6E-13 8.8E-18 110.4 12.2 133 97-239 35-211 (220)
20 1ve3_A Hypothetical protein PH 99.5 7.8E-15 2.7E-19 119.8 2.2 163 70-239 3-226 (227)
21 3dh0_A SAM dependent methyltra 99.5 4.8E-13 1.6E-17 108.7 12.5 122 96-239 26-192 (219)
22 3pfg_A N-methyltransferase; N, 99.4 1E-13 3.5E-18 116.1 6.2 131 107-239 49-248 (263)
23 3ou2_A SAM-dependent methyltra 99.4 4.1E-13 1.4E-17 108.7 9.2 127 96-228 34-205 (218)
24 1vl5_A Unknown conserved prote 99.4 7.2E-13 2.5E-17 110.7 10.7 134 84-228 14-190 (260)
25 3dli_A Methyltransferase; PSI- 99.4 1.7E-12 5.9E-17 107.2 12.0 121 96-229 29-185 (240)
26 3dlc_A Putative S-adenosyl-L-m 99.4 2E-13 6.8E-18 110.4 5.8 149 81-236 14-211 (219)
27 3ujc_A Phosphoethanolamine N-m 99.4 1.2E-12 4.1E-17 109.1 10.5 122 96-228 44-206 (266)
28 3bus_A REBM, methyltransferase 99.4 1.3E-12 4.5E-17 109.7 10.3 123 96-228 50-216 (273)
29 1xtp_A LMAJ004091AAA; SGPP, st 99.4 1E-12 3.5E-17 109.0 8.9 116 97-229 83-239 (254)
30 2o57_A Putative sarcosine dime 99.4 1.6E-12 5.6E-17 110.7 10.4 120 96-228 67-234 (297)
31 1kpg_A CFA synthase;, cyclopro 99.4 5.5E-12 1.9E-16 106.8 13.5 128 97-228 54-228 (287)
32 1xxl_A YCGJ protein; structura 99.4 2.4E-12 8.2E-17 106.5 10.4 122 96-228 10-174 (239)
33 3vc1_A Geranyl diphosphate 2-C 99.4 3.3E-12 1.1E-16 109.8 11.6 133 83-228 93-269 (312)
34 3i9f_A Putative type 11 methyl 99.4 2E-12 6.9E-17 101.0 8.9 115 98-238 8-158 (170)
35 2zfu_A Nucleomethylin, cerebra 99.4 2.1E-12 7.2E-17 104.8 9.2 112 96-239 55-190 (215)
36 3g2m_A PCZA361.24; SAM-depende 99.3 2.6E-12 8.9E-17 109.7 9.3 153 83-239 58-291 (299)
37 3bxo_A N,N-dimethyltransferase 99.3 5.8E-13 2E-17 109.4 4.7 131 107-239 39-238 (239)
38 3ocj_A Putative exported prote 99.3 5.4E-12 1.9E-16 108.2 10.0 132 106-239 116-303 (305)
39 3h2b_A SAM-dependent methyltra 99.3 1.9E-12 6.6E-17 104.0 6.5 113 109-237 42-192 (203)
40 3hem_A Cyclopropane-fatty-acyl 99.3 1.2E-11 4.2E-16 105.7 11.6 129 97-229 62-244 (302)
41 3lcc_A Putative methyl chlorid 99.3 6.2E-12 2.1E-16 103.5 9.3 99 110-229 68-208 (235)
42 2fk8_A Methoxy mycolic acid sy 99.3 1.6E-11 5.4E-16 105.6 11.5 128 97-228 80-254 (318)
43 1nkv_A Hypothetical protein YJ 99.3 7E-12 2.4E-16 104.2 8.8 120 96-228 25-187 (256)
44 2ex4_A Adrenal gland protein A 99.3 5E-12 1.7E-16 104.5 7.7 105 108-229 79-226 (241)
45 2qe6_A Uncharacterized protein 99.3 1.6E-11 5.4E-16 104.2 10.8 81 133-224 158-238 (274)
46 3e23_A Uncharacterized protein 99.3 1.4E-11 4.7E-16 99.7 9.4 113 99-228 34-182 (211)
47 3mgg_A Methyltransferase; NYSG 99.3 9.6E-12 3.3E-16 104.7 8.6 116 106-228 35-198 (276)
48 3bkw_A MLL3908 protein, S-aden 99.3 3.4E-11 1.2E-15 99.0 11.7 146 78-228 10-214 (243)
49 1y8c_A S-adenosylmethionine-de 99.3 1E-11 3.5E-16 102.1 7.7 128 108-239 37-244 (246)
50 3sm3_A SAM-dependent methyltra 99.2 3.3E-11 1.1E-15 98.3 9.9 89 134-227 103-206 (235)
51 3f4k_A Putative methyltransfer 99.2 2.3E-11 8E-16 101.0 9.1 118 98-229 36-197 (257)
52 3d2l_A SAM-dependent methyltra 99.2 2.2E-11 7.5E-16 100.2 8.5 131 107-239 32-242 (243)
53 3l8d_A Methyltransferase; stru 99.2 1.5E-11 5.2E-16 101.2 7.5 110 107-228 52-200 (242)
54 2xvm_A Tellurite resistance pr 99.2 6.2E-11 2.1E-15 94.4 10.7 110 97-227 22-172 (199)
55 3kkz_A Uncharacterized protein 99.2 3.4E-11 1.2E-15 100.9 9.0 118 98-229 36-197 (267)
56 3ege_A Putative methyltransfer 99.2 6.4E-11 2.2E-15 99.2 10.0 120 96-228 23-178 (261)
57 2p7i_A Hypothetical protein; p 99.2 8.2E-11 2.8E-15 96.7 10.2 112 106-228 40-199 (250)
58 1vlm_A SAM-dependent methyltra 99.2 1.5E-10 5.3E-15 94.2 11.5 110 109-228 48-188 (219)
59 2yqz_A Hypothetical protein TT 99.2 1E-10 3.4E-15 97.3 10.0 114 106-226 37-194 (263)
60 3cgg_A SAM-dependent methyltra 99.2 2.2E-10 7.4E-15 90.6 11.4 118 80-228 19-175 (195)
61 4htf_A S-adenosylmethionine-de 99.2 6.3E-11 2.2E-15 100.2 8.7 123 98-229 60-233 (285)
62 3cc8_A Putative methyltransfer 99.2 8.2E-11 2.8E-15 95.6 8.6 132 82-228 8-185 (230)
63 3gu3_A Methyltransferase; alph 99.1 1.7E-10 5.8E-15 97.8 10.2 125 98-227 12-189 (284)
64 3g5l_A Putative S-adenosylmeth 99.1 3.9E-11 1.3E-15 99.6 6.0 127 97-228 34-216 (253)
65 3e8s_A Putative SAM dependent 99.1 3E-11 1E-15 98.0 4.9 122 97-227 42-208 (227)
66 3ccf_A Cyclopropane-fatty-acyl 99.1 7.2E-11 2.5E-15 99.6 7.3 124 95-228 45-210 (279)
67 3jwg_A HEN1, methyltransferase 99.1 3.6E-10 1.2E-14 91.7 9.1 81 134-224 104-188 (219)
68 3ggd_A SAM-dependent methyltra 99.1 2.7E-10 9.2E-15 94.1 8.1 114 106-227 54-218 (245)
69 2qm3_A Predicted methyltransfe 99.1 9E-11 3.1E-15 103.7 5.0 159 2-174 47-280 (373)
70 4e2x_A TCAB9; kijanose, tetron 99.1 1.1E-10 3.6E-15 104.3 5.4 120 95-229 95-254 (416)
71 2p8j_A S-adenosylmethionine-de 99.1 1.3E-10 4.6E-15 93.3 5.4 117 106-225 21-180 (209)
72 4fsd_A Arsenic methyltransfera 99.1 4.6E-10 1.6E-14 99.4 9.2 83 134-227 168-250 (383)
73 3jwh_A HEN1; methyltransferase 99.0 3.2E-10 1.1E-14 92.0 7.0 81 134-224 104-188 (217)
74 1pjz_A Thiopurine S-methyltran 99.0 6.5E-10 2.2E-14 89.8 8.6 74 134-228 103-176 (203)
75 3bkx_A SAM-dependent methyltra 99.0 1.9E-09 6.6E-14 90.3 11.4 127 97-228 33-219 (275)
76 2p35_A Trans-aconitate 2-methy 99.0 7.1E-10 2.4E-14 92.0 8.0 117 97-222 23-184 (259)
77 3m70_A Tellurite resistance pr 99.0 1.4E-09 4.7E-14 92.0 9.5 109 97-226 110-258 (286)
78 2aot_A HMT, histamine N-methyl 99.0 1.1E-09 3.8E-14 93.1 8.6 79 134-225 137-218 (292)
79 3thr_A Glycine N-methyltransfe 98.9 4.1E-10 1.4E-14 95.4 4.5 75 97-172 47-176 (293)
80 2a14_A Indolethylamine N-methy 98.9 1.5E-09 5.1E-14 91.1 7.8 91 133-239 157-259 (263)
81 1ri5_A MRNA capping enzyme; me 98.9 1.5E-09 5E-14 91.8 6.3 121 106-228 62-250 (298)
82 1wzn_A SAM-dependent methyltra 98.9 1.9E-08 6.4E-13 83.2 12.5 73 97-170 31-144 (252)
83 2g72_A Phenylethanolamine N-me 98.9 2.5E-09 8.7E-14 90.6 6.6 79 134-228 176-256 (289)
84 2i62_A Nicotinamide N-methyltr 98.9 1.2E-08 3.9E-13 84.8 10.0 90 134-239 159-260 (265)
85 2kw5_A SLR1183 protein; struct 98.9 1.2E-08 4.1E-13 81.5 9.7 98 111-227 32-170 (202)
86 2ld4_A Anamorsin; methyltransf 98.8 1.5E-08 5.2E-13 79.4 9.5 91 106-220 10-128 (176)
87 3grz_A L11 mtase, ribosomal pr 98.8 5.1E-09 1.7E-13 84.1 6.3 97 107-239 59-196 (205)
88 3giw_A Protein of unknown func 98.8 2.8E-08 9.6E-13 84.0 10.7 80 135-224 163-243 (277)
89 3g07_A 7SK snRNA methylphospha 98.8 2.1E-09 7.2E-14 91.6 3.5 85 134-228 179-269 (292)
90 3ofk_A Nodulation protein S; N 98.8 1.1E-08 3.8E-13 82.6 6.6 67 106-172 49-155 (216)
91 2gb4_A Thiopurine S-methyltran 98.8 2.6E-08 8.8E-13 83.3 8.9 83 124-227 140-226 (252)
92 4hg2_A Methyltransferase type 98.7 8E-09 2.7E-13 86.7 5.6 65 108-175 39-139 (257)
93 1fbn_A MJ fibrillarin homologu 98.7 2.4E-08 8.2E-13 81.9 8.1 111 100-239 67-227 (230)
94 2gs9_A Hypothetical protein TT 98.7 3E-08 1E-12 79.7 7.4 107 98-219 28-171 (211)
95 3iv6_A Putative Zn-dependent a 98.7 2.3E-08 8E-13 84.0 6.5 75 95-171 33-148 (261)
96 3g5t_A Trans-aconitate 3-methy 98.7 4.3E-08 1.5E-12 83.4 7.7 37 134-173 115-151 (299)
97 1dus_A MJ0882; hypothetical pr 98.6 1.2E-07 4E-12 74.6 8.1 109 97-239 42-193 (194)
98 3q87_B N6 adenine specific DNA 98.6 2E-07 6.7E-12 72.9 8.9 90 107-228 22-149 (170)
99 2b3t_A Protein methyltransfera 98.6 3.7E-07 1.3E-11 76.8 11.2 101 107-239 108-275 (276)
100 3bgv_A MRNA CAP guanine-N7 met 98.6 1.7E-07 5.8E-12 80.2 8.6 39 134-172 116-156 (313)
101 4df3_A Fibrillarin-like rRNA/T 98.6 6.8E-08 2.3E-12 79.8 5.7 110 102-238 72-230 (233)
102 3e05_A Precorrin-6Y C5,15-meth 98.6 2.4E-07 8.4E-12 74.1 8.8 70 97-172 30-143 (204)
103 3uwp_A Histone-lysine N-methyl 98.5 8E-08 2.7E-12 85.5 6.1 79 96-178 162-295 (438)
104 3orh_A Guanidinoacetate N-meth 98.5 3.1E-08 1.1E-12 81.8 2.5 73 134-225 130-207 (236)
105 1zx0_A Guanidinoacetate N-meth 98.5 5.5E-08 1.9E-12 79.9 3.7 67 107-173 59-172 (236)
106 4dzr_A Protein-(glutamine-N5) 98.5 1.4E-07 4.8E-12 75.4 5.3 110 98-238 20-203 (215)
107 1g8a_A Fibrillarin-like PRE-rR 98.5 5.9E-07 2E-11 73.1 9.0 107 106-239 71-226 (227)
108 2pxx_A Uncharacterized protein 98.5 1.3E-07 4.5E-12 75.7 5.0 67 107-173 41-161 (215)
109 2nxc_A L11 mtase, ribosomal pr 98.4 3E-07 1E-11 76.6 6.6 96 107-239 119-254 (254)
110 3mq2_A 16S rRNA methyltransfer 98.4 1.7E-07 5.9E-12 75.7 4.5 65 151-228 120-184 (218)
111 3hm2_A Precorrin-6Y C5,15-meth 98.4 3.7E-07 1.3E-11 71.0 6.1 69 98-173 16-129 (178)
112 2pjd_A Ribosomal RNA small sub 98.4 1.5E-07 5.2E-12 81.9 3.7 76 96-172 185-304 (343)
113 1l3i_A Precorrin-6Y methyltran 98.4 4.5E-07 1.6E-11 71.0 6.0 69 98-172 24-135 (192)
114 2avn_A Ubiquinone/menaquinone 98.4 2E-07 6.8E-12 77.6 4.1 65 108-173 54-154 (260)
115 2ipx_A RRNA 2'-O-methyltransfe 98.4 6.8E-07 2.3E-11 73.1 6.7 106 106-238 75-230 (233)
116 2vdw_A Vaccinia virus capping 98.3 3.7E-07 1.3E-11 78.2 5.1 39 134-172 131-170 (302)
117 3p2e_A 16S rRNA methylase; met 98.3 7.4E-07 2.5E-11 73.0 5.5 68 151-229 119-186 (225)
118 3evz_A Methyltransferase; NYSG 98.3 2E-06 6.7E-11 69.9 7.5 93 106-228 53-206 (230)
119 3m33_A Uncharacterized protein 98.2 2.3E-07 7.8E-12 75.7 1.6 81 107-227 47-166 (226)
120 1nt2_A Fibrillarin-like PRE-rR 98.2 2E-06 6.8E-11 69.6 7.1 105 106-239 55-209 (210)
121 3fzg_A 16S rRNA methylase; met 98.2 5.6E-07 1.9E-11 71.9 3.7 63 107-171 48-152 (200)
122 3hp7_A Hemolysin, putative; st 98.2 3.8E-06 1.3E-10 71.5 8.5 115 97-228 74-232 (291)
123 3id6_C Fibrillarin-like rRNA/T 98.2 4.3E-06 1.5E-10 68.9 8.4 117 97-239 63-230 (232)
124 3lpm_A Putative methyltransfer 98.2 5.8E-06 2E-10 68.8 9.2 102 106-239 46-218 (259)
125 4dcm_A Ribosomal RNA large sub 98.2 1.3E-06 4.6E-11 77.0 5.3 73 98-171 213-334 (375)
126 2y1w_A Histone-arginine methyl 98.2 8.6E-07 2.9E-11 77.3 4.0 73 97-170 40-154 (348)
127 3opn_A Putative hemolysin; str 98.2 1.7E-06 5.8E-11 71.3 5.0 67 151-228 117-184 (232)
128 3b3j_A Histone-arginine methyl 98.1 1.1E-06 3.8E-11 80.0 3.9 72 97-169 148-261 (480)
129 1ej0_A FTSJ; methyltransferase 98.1 4E-06 1.4E-10 64.4 6.0 76 98-173 12-138 (180)
130 3htx_A HEN1; HEN1, small RNA m 98.1 5.7E-06 2E-10 79.1 7.9 38 134-172 798-835 (950)
131 1xdz_A Methyltransferase GIDB; 98.1 2.3E-06 7.8E-11 70.4 4.5 87 106-227 68-201 (240)
132 3mb5_A SAM-dependent methyltra 98.1 8.6E-07 2.9E-11 73.3 1.8 68 96-171 82-194 (255)
133 3eey_A Putative rRNA methylase 98.1 7.1E-06 2.4E-10 64.9 7.0 69 106-174 20-142 (197)
134 3lbf_A Protein-L-isoaspartate 98.1 2.6E-06 8.9E-11 68.2 4.5 66 97-171 67-174 (210)
135 1yb2_A Hypothetical protein TA 98.1 1.7E-06 5.8E-11 72.7 3.3 68 96-171 99-211 (275)
136 3lcv_B Sisomicin-gentamicin re 98.1 3.7E-06 1.3E-10 70.3 5.2 99 107-230 131-273 (281)
137 3bwc_A Spermidine synthase; SA 98.0 6.5E-06 2.2E-10 70.4 5.8 68 134-228 171-240 (304)
138 3mti_A RRNA methylase; SAM-dep 98.0 5.3E-06 1.8E-10 65.0 4.8 40 134-173 91-137 (185)
139 1u2z_A Histone-lysine N-methyl 98.0 1.1E-05 3.8E-10 72.3 7.2 42 133-177 324-365 (433)
140 3b5i_A S-adenosyl-L-methionine 98.0 3.8E-05 1.3E-09 67.6 10.1 97 126-227 141-297 (374)
141 2h00_A Methyltransferase 10 do 98.0 2.3E-07 7.8E-12 76.9 -3.9 85 134-229 142-239 (254)
142 3dmg_A Probable ribosomal RNA 98.0 6.5E-06 2.2E-10 72.7 5.1 64 108-171 233-340 (381)
143 3njr_A Precorrin-6Y methylase; 98.0 1.5E-05 5E-10 64.1 6.7 66 98-171 46-154 (204)
144 1vbf_A 231AA long hypothetical 98.0 6.9E-06 2.4E-10 66.7 4.8 67 97-172 60-166 (231)
145 2yxe_A Protein-L-isoaspartate 97.9 7.3E-06 2.5E-10 65.8 4.7 65 98-171 68-177 (215)
146 3dou_A Ribosomal RNA large sub 97.9 6.9E-06 2.4E-10 65.5 4.5 77 96-172 13-140 (191)
147 2plw_A Ribosomal RNA methyltra 97.9 8.8E-06 3E-10 64.5 5.0 38 134-171 108-154 (201)
148 3p9n_A Possible methyltransfer 97.9 2.3E-05 7.9E-10 61.7 6.9 66 107-173 43-155 (189)
149 3kr9_A SAM-dependent methyltra 97.9 4.2E-05 1.4E-09 62.7 8.6 95 107-238 14-156 (225)
150 3fpf_A Mtnas, putative unchara 97.9 2.1E-05 7.2E-10 67.0 6.6 60 106-171 120-222 (298)
151 2yxd_A Probable cobalt-precorr 97.9 1.5E-05 5E-10 61.8 5.3 67 97-172 25-132 (183)
152 1jg1_A PIMT;, protein-L-isoasp 97.9 1.1E-05 3.7E-10 66.0 4.3 66 97-171 81-189 (235)
153 3g89_A Ribosomal RNA small sub 97.8 1.1E-05 3.6E-10 67.1 4.1 70 134-238 153-227 (249)
154 2fyt_A Protein arginine N-meth 97.8 1.6E-05 5.5E-10 69.0 5.2 70 98-168 55-168 (340)
155 3r0q_C Probable protein argini 97.8 1E-05 3.5E-10 71.3 3.8 67 106-172 61-170 (376)
156 1m6e_X S-adenosyl-L-methionnin 97.8 0.00037 1.3E-08 60.9 13.5 101 124-226 128-278 (359)
157 1jsx_A Glucose-inhibited divis 97.8 1E-05 3.5E-10 64.4 3.4 56 109-170 66-164 (207)
158 1yzh_A TRNA (guanine-N(7)-)-me 97.8 3.5E-05 1.2E-09 61.9 6.5 62 108-170 41-155 (214)
159 2frn_A Hypothetical protein PH 97.8 5.3E-05 1.8E-09 63.8 7.6 88 106-224 123-253 (278)
160 3u81_A Catechol O-methyltransf 97.8 1.1E-05 3.6E-10 65.4 3.0 38 134-174 136-173 (221)
161 3duw_A OMT, O-methyltransferas 97.8 2.3E-05 7.8E-10 63.3 5.0 37 134-175 135-171 (223)
162 3lec_A NADB-rossmann superfami 97.8 0.00013 4.3E-09 60.0 9.4 95 107-238 20-162 (230)
163 3q7e_A Protein arginine N-meth 97.8 9.1E-06 3.1E-10 70.8 2.6 64 106-169 64-171 (349)
164 1o9g_A RRNA methyltransferase; 97.7 0.0001 3.6E-09 60.6 8.8 40 134-173 170-216 (250)
165 2efj_A 3,7-dimethylxanthine me 97.7 5.4E-05 1.8E-09 66.8 7.3 103 122-226 136-290 (384)
166 3tfw_A Putative O-methyltransf 97.7 2.2E-05 7.6E-10 64.9 4.5 37 134-175 138-174 (248)
167 3dxy_A TRNA (guanine-N(7)-)-me 97.7 1.6E-05 5.5E-10 64.7 3.4 63 108-171 34-150 (218)
168 1o54_A SAM-dependent O-methylt 97.7 2.7E-05 9.2E-10 65.3 4.9 69 96-172 101-214 (277)
169 1dl5_A Protein-L-isoaspartate 97.7 2.5E-05 8.6E-10 66.9 4.7 66 97-171 65-175 (317)
170 3ntv_A MW1564 protein; rossman 97.7 1E-05 3.5E-10 66.2 2.1 65 106-175 69-180 (232)
171 1ixk_A Methyltransferase; open 97.7 3.2E-05 1.1E-09 66.4 5.0 153 17-174 6-249 (315)
172 2fca_A TRNA (guanine-N(7)-)-me 97.7 3.8E-05 1.3E-09 62.0 5.2 21 151-171 133-153 (213)
173 2pwy_A TRNA (adenine-N(1)-)-me 97.7 2.9E-05 1E-09 63.8 4.5 68 97-172 86-199 (258)
174 2gpy_A O-methyltransferase; st 97.7 4.2E-05 1.4E-09 62.2 5.4 36 134-174 128-163 (233)
175 1g6q_1 HnRNP arginine N-methyl 97.7 2E-05 6.7E-10 68.1 3.3 64 106-169 36-143 (328)
176 2esr_A Methyltransferase; stru 97.7 3.4E-05 1.2E-09 59.9 4.1 74 97-173 20-140 (177)
177 2yvl_A TRMI protein, hypotheti 97.6 9.4E-05 3.2E-09 60.4 6.9 91 74-172 54-191 (248)
178 2fhp_A Methylase, putative; al 97.6 4.1E-05 1.4E-09 59.7 4.4 71 99-172 35-155 (187)
179 3r3h_A O-methyltransferase, SA 97.6 5.3E-05 1.8E-09 62.5 4.8 38 134-176 138-175 (242)
180 2p41_A Type II methyltransfera 97.6 7.7E-05 2.6E-09 63.8 5.9 36 134-169 150-189 (305)
181 2b25_A Hypothetical protein; s 97.6 2.9E-05 9.9E-10 67.0 3.1 32 134-172 189-220 (336)
182 3gnl_A Uncharacterized protein 97.6 0.00025 8.7E-09 58.7 8.5 95 107-238 20-162 (244)
183 1zq9_A Probable dimethyladenos 97.6 4.9E-05 1.7E-09 64.3 4.2 71 96-168 17-144 (285)
184 1p91_A Ribosomal RNA large sub 97.6 6.1E-05 2.1E-09 62.5 4.7 58 107-173 84-180 (269)
185 2nyu_A Putative ribosomal RNA 97.6 5.8E-05 2E-09 59.4 4.3 39 134-172 99-146 (196)
186 3frh_A 16S rRNA methylase; met 97.5 4.8E-05 1.6E-09 62.9 3.7 65 106-171 103-206 (253)
187 1ws6_A Methyltransferase; stru 97.5 4E-05 1.4E-09 58.7 3.0 38 133-172 111-148 (171)
188 3sso_A Methyltransferase; macr 97.5 5.3E-05 1.8E-09 67.2 4.1 37 134-173 290-326 (419)
189 3tr6_A O-methyltransferase; ce 97.5 2.2E-05 7.6E-10 63.4 1.5 37 134-175 142-178 (225)
190 2hnk_A SAM-dependent O-methylt 97.5 3.8E-05 1.3E-09 62.9 2.4 37 134-175 149-185 (239)
191 2yxl_A PH0851 protein, 450AA l 97.5 0.00012 4.2E-09 65.8 5.6 77 98-175 250-393 (450)
192 3adn_A Spermidine synthase; am 97.5 9E-05 3.1E-09 63.1 4.4 38 134-171 159-198 (294)
193 2ozv_A Hypothetical protein AT 97.4 8.4E-05 2.9E-09 61.9 4.0 22 149-170 148-169 (260)
194 1i9g_A Hypothetical protein RV 97.4 0.00011 3.7E-09 61.3 4.8 88 76-172 65-204 (280)
195 2avd_A Catechol-O-methyltransf 97.4 6.3E-05 2.2E-09 60.8 2.5 37 134-175 147-183 (229)
196 2oxt_A Nucleoside-2'-O-methylt 97.4 0.00032 1.1E-08 58.7 6.8 65 106-172 72-186 (265)
197 3ajd_A Putative methyltransfer 97.4 8.3E-05 2.9E-09 62.4 3.1 24 151-174 191-214 (274)
198 1af7_A Chemotaxis receptor met 97.4 0.00011 3.8E-09 61.9 3.8 45 125-169 202-250 (274)
199 3bzb_A Uncharacterized protein 97.4 0.00026 8.9E-09 59.5 6.0 35 134-170 165-204 (281)
200 2vdv_E TRNA (guanine-N(7)-)-me 97.3 5.3E-05 1.8E-09 62.3 1.6 20 151-170 153-172 (246)
201 3gdh_A Trimethylguanosine synt 97.3 5E-06 1.7E-10 68.1 -4.7 60 108-169 78-179 (241)
202 2wa2_A Non-structural protein 97.3 0.00035 1.2E-08 58.9 6.6 64 106-171 80-193 (276)
203 3ckk_A TRNA (guanine-N(7)-)-me 97.3 0.00012 4.2E-09 60.1 3.6 20 151-170 148-167 (235)
204 1nv8_A HEMK protein; class I a 97.3 0.00033 1.1E-08 59.1 6.0 61 108-169 123-247 (284)
205 2bm8_A Cephalosporin hydroxyla 97.3 0.00024 8.2E-09 58.3 5.0 34 134-172 154-188 (236)
206 3tma_A Methyltransferase; thum 97.2 0.00048 1.6E-08 59.8 6.6 74 96-170 192-316 (354)
207 1sui_A Caffeoyl-COA O-methyltr 97.2 0.00015 5.2E-09 59.9 3.3 36 134-174 158-193 (247)
208 4hc4_A Protein arginine N-meth 97.2 0.00015 5E-09 63.9 3.0 61 109-169 84-187 (376)
209 2fpo_A Methylase YHHF; structu 97.2 0.00018 6E-09 57.5 3.2 62 108-172 54-161 (202)
210 2ift_A Putative methylase HI07 97.2 0.00014 4.7E-09 58.1 2.5 38 133-173 126-165 (201)
211 3dr5_A Putative O-methyltransf 97.2 0.00014 4.6E-09 59.2 2.4 36 134-174 131-166 (221)
212 3c3y_A Pfomt, O-methyltransfer 97.2 0.00014 4.8E-09 59.6 2.3 36 134-174 149-184 (237)
213 1yub_A Ermam, rRNA methyltrans 97.2 0.00027 9.3E-09 58.1 3.9 25 96-121 18-42 (245)
214 3c3p_A Methyltransferase; NP_9 97.2 7.2E-05 2.5E-09 59.8 0.4 36 134-174 128-163 (210)
215 3m6w_A RRNA methylase; rRNA me 97.1 0.00022 7.4E-09 64.5 3.2 91 83-174 77-232 (464)
216 1sqg_A SUN protein, FMU protei 97.1 0.00023 7.8E-09 63.6 3.3 75 99-174 238-377 (429)
217 3cbg_A O-methyltransferase; cy 97.1 0.00015 5.1E-09 59.2 1.8 37 134-175 150-186 (232)
218 2i7c_A Spermidine synthase; tr 97.1 0.00021 7.1E-09 60.3 2.5 37 134-170 153-191 (283)
219 1ne2_A Hypothetical protein TA 97.1 0.00064 2.2E-08 53.7 5.2 61 106-170 49-145 (200)
220 3gjy_A Spermidine synthase; AP 97.1 0.00023 7.8E-09 61.2 2.7 39 134-172 161-201 (317)
221 2frx_A Hypothetical protein YE 97.1 0.00049 1.7E-08 62.4 5.0 24 151-174 226-249 (479)
222 4azs_A Methyltransferase WBDD; 97.0 0.00013 4.3E-09 67.7 0.7 44 134-177 136-179 (569)
223 3a27_A TYW2, uncharacterized p 97.0 0.00027 9.2E-09 59.2 2.7 65 106-176 117-224 (272)
224 1r18_A Protein-L-isoaspartate( 97.0 0.00065 2.2E-08 54.8 4.7 29 134-170 165-193 (227)
225 1i1n_A Protein-L-isoaspartate 96.9 0.00049 1.7E-08 55.4 3.5 30 134-171 153-182 (226)
226 1iy9_A Spermidine synthase; ro 96.9 0.00025 8.7E-09 59.6 1.7 37 134-170 150-188 (275)
227 2b2c_A Spermidine synthase; be 96.9 0.00038 1.3E-08 59.7 2.5 38 134-171 183-222 (314)
228 1qam_A ERMC' methyltransferase 96.9 0.00096 3.3E-08 54.9 4.9 25 96-121 19-43 (244)
229 2ih2_A Modification methylase 96.8 0.0016 5.4E-08 57.5 6.3 75 96-171 28-164 (421)
230 2f8l_A Hypothetical protein LM 96.8 0.001 3.4E-08 57.5 4.9 65 107-171 129-256 (344)
231 1inl_A Spermidine synthase; be 96.8 0.00038 1.3E-08 59.1 2.0 20 151-170 185-204 (296)
232 1xj5_A Spermidine synthase 1; 96.8 0.00045 1.5E-08 59.8 2.5 37 134-170 196-234 (334)
233 2pt6_A Spermidine synthase; tr 96.8 0.00038 1.3E-08 59.8 2.0 36 134-170 191-229 (321)
234 1uir_A Polyamine aminopropyltr 96.8 0.00039 1.3E-08 59.5 2.0 38 134-171 153-195 (314)
235 2o07_A Spermidine synthase; st 96.8 0.00039 1.4E-08 59.3 2.0 38 134-171 170-209 (304)
236 3k6r_A Putative transferase PH 96.7 0.0017 5.8E-08 54.7 5.3 63 106-174 123-228 (278)
237 3m4x_A NOL1/NOP2/SUN family pr 96.7 0.00066 2.3E-08 61.2 2.9 92 82-174 80-237 (456)
238 4gqb_A Protein arginine N-meth 96.7 0.0014 4.9E-08 61.3 5.2 91 71-168 324-464 (637)
239 2h1r_A Dimethyladenosine trans 96.7 0.0033 1.1E-07 53.3 6.9 68 96-165 31-153 (299)
240 2pbf_A Protein-L-isoaspartate 96.5 0.0018 6.1E-08 52.1 3.6 30 134-171 164-193 (227)
241 1wy7_A Hypothetical protein PH 96.4 0.0054 1.8E-07 48.4 6.2 55 106-161 47-141 (207)
242 1rjd_A PPM1P, carboxy methyl t 96.3 0.034 1.1E-06 48.0 11.0 81 134-221 196-281 (334)
243 3tm4_A TRNA (guanine N2-)-meth 96.1 0.011 3.8E-07 51.6 6.8 16 106-121 215-230 (373)
244 1qbj_A Protein (double-strande 96.1 0.0069 2.4E-07 41.2 4.3 57 3-63 15-76 (81)
245 2cmg_A Spermidine synthase; tr 96.1 0.0038 1.3E-07 52.0 3.6 30 134-170 141-170 (262)
246 2igt_A SAM dependent methyltra 96.1 0.0064 2.2E-07 52.4 5.1 25 149-173 250-274 (332)
247 2xyq_A Putative 2'-O-methyl tr 96.0 0.0045 1.5E-07 52.5 3.9 24 148-171 148-171 (290)
248 2heo_A Z-DNA binding protein 1 96.0 0.0028 9.7E-08 41.4 2.0 49 3-57 15-66 (67)
249 1mjf_A Spermidine synthase; sp 96.0 0.0026 9E-08 53.4 2.3 37 134-170 154-192 (281)
250 1wxx_A TT1595, hypothetical pr 96.0 0.0029 1E-07 55.5 2.6 25 148-172 302-326 (382)
251 3evf_A RNA-directed RNA polyme 96.0 0.012 4.1E-07 49.3 6.2 75 98-174 65-186 (277)
252 2vz8_A Fatty acid synthase; tr 95.9 0.0091 3.1E-07 64.0 6.5 82 134-227 1313-1394(2512)
253 2as0_A Hypothetical protein PH 95.8 0.0041 1.4E-07 54.7 2.6 25 148-172 312-336 (396)
254 3b73_A PHIH1 repressor-like pr 95.6 0.014 4.7E-07 42.2 4.4 55 3-64 18-77 (111)
255 3mq0_A Transcriptional repress 95.6 0.0052 1.8E-07 51.5 2.5 56 2-63 34-92 (275)
256 1qgp_A Protein (double strande 95.6 0.0072 2.5E-07 40.7 2.6 52 3-58 19-75 (77)
257 4dmg_A Putative uncharacterize 95.5 0.0095 3.3E-07 52.6 4.1 66 108-173 214-328 (393)
258 3ua3_A Protein arginine N-meth 95.5 0.018 6.1E-07 54.3 6.0 91 71-168 379-531 (745)
259 2yx1_A Hypothetical protein MJ 95.2 0.0086 3E-07 51.5 2.8 62 107-174 194-294 (336)
260 2uyo_A Hypothetical protein ML 95.2 0.16 5.4E-06 43.3 10.4 84 134-223 181-274 (310)
261 3gcz_A Polyprotein; flavivirus 95.1 0.017 5.7E-07 48.5 4.0 72 96-169 79-199 (282)
262 2xrn_A HTH-type transcriptiona 95.0 0.014 4.9E-07 47.8 3.4 57 2-64 10-70 (241)
263 2okc_A Type I restriction enzy 94.9 0.013 4.5E-07 52.3 3.2 21 151-171 287-307 (445)
264 1xmk_A Double-stranded RNA-spe 94.9 0.02 6.9E-07 38.7 3.3 53 3-62 16-74 (79)
265 3r4k_A Transcriptional regulat 94.9 0.0079 2.7E-07 49.9 1.4 56 2-63 10-69 (260)
266 3k0b_A Predicted N6-adenine-sp 94.7 0.035 1.2E-06 48.9 5.1 25 96-121 190-214 (393)
267 2b78_A Hypothetical protein SM 94.7 0.014 4.9E-07 51.2 2.6 23 149-171 309-331 (385)
268 3v97_A Ribosomal RNA large sub 94.6 0.0098 3.3E-07 56.4 1.5 24 148-171 634-657 (703)
269 1mkm_A ICLR transcriptional re 94.6 0.028 9.4E-07 46.2 4.1 56 2-63 12-70 (249)
270 2g7u_A Transcriptional regulat 94.6 0.013 4.4E-07 48.5 2.0 56 3-64 19-76 (257)
271 3ldg_A Putative uncharacterize 94.6 0.094 3.2E-06 46.0 7.6 25 96-121 183-207 (384)
272 2y75_A HTH-type transcriptiona 94.5 0.029 1E-06 41.1 3.7 53 4-60 15-72 (129)
273 1uwv_A 23S rRNA (uracil-5-)-me 94.2 0.08 2.7E-06 47.1 6.5 23 98-121 277-299 (433)
274 1y0u_A Arsenical resistance op 94.2 0.029 1E-06 38.9 2.9 49 3-61 36-87 (96)
275 3c0k_A UPF0064 protein YCCW; P 94.1 0.027 9.1E-07 49.5 3.2 24 148-171 316-339 (396)
276 3gru_A Dimethyladenosine trans 94.1 0.052 1.8E-06 45.9 4.7 25 96-121 39-63 (295)
277 2ia2_A Putative transcriptiona 94.0 0.011 3.6E-07 49.3 0.3 53 2-60 25-79 (265)
278 3ldu_A Putative methylase; str 93.7 0.069 2.4E-06 46.8 5.0 25 96-121 184-208 (385)
279 3fut_A Dimethyladenosine trans 93.7 0.082 2.8E-06 44.1 5.1 59 96-156 36-133 (271)
280 2jjq_A Uncharacterized RNA met 93.6 0.054 1.8E-06 48.2 4.2 15 107-121 289-303 (425)
281 2o0y_A Transcriptional regulat 93.6 0.032 1.1E-06 46.2 2.5 56 2-63 27-85 (260)
282 3t8r_A Staphylococcus aureus C 93.5 0.06 2.1E-06 40.4 3.6 52 6-61 19-75 (143)
283 3lwf_A LIN1550 protein, putati 93.0 0.11 3.7E-06 39.8 4.4 51 6-60 35-90 (159)
284 1xn7_A Hypothetical protein YH 92.6 0.12 3.9E-06 34.8 3.7 37 3-46 7-43 (78)
285 3eld_A Methyltransferase; flav 92.5 0.32 1.1E-05 41.0 7.0 37 134-170 149-190 (300)
286 3pqk_A Biofilm growth-associat 92.1 0.11 3.8E-06 36.2 3.3 49 3-59 28-82 (102)
287 2px2_A Genome polyprotein [con 92.1 0.32 1.1E-05 40.3 6.3 25 96-121 62-86 (269)
288 2oqg_A Possible transcriptiona 92.1 0.12 4.1E-06 36.6 3.4 52 3-62 26-83 (114)
289 2k02_A Ferrous iron transport 91.9 0.12 4.2E-06 35.4 3.1 37 3-46 7-43 (87)
290 3tqs_A Ribosomal RNA small sub 91.7 0.17 5.7E-06 41.8 4.4 25 96-121 18-42 (255)
291 1r7j_A Conserved hypothetical 91.6 0.15 5.2E-06 35.4 3.4 45 16-64 21-67 (95)
292 1on2_A Transcriptional regulat 91.5 0.19 6.5E-06 37.0 4.1 47 14-64 21-70 (142)
293 2lnb_A Z-DNA-binding protein 1 91.4 0.1 3.5E-06 34.8 2.2 38 3-46 24-61 (80)
294 1ub9_A Hypothetical protein PH 91.4 0.11 3.7E-06 35.7 2.5 54 3-63 21-83 (100)
295 2jt1_A PEFI protein; solution 91.4 0.099 3.4E-06 35.0 2.2 29 14-46 23-51 (77)
296 2wte_A CSA3; antiviral protein 91.3 0.2 6.8E-06 41.1 4.4 63 3-72 157-225 (244)
297 3jth_A Transcription activator 91.2 0.096 3.3E-06 36.2 2.1 50 3-60 28-83 (98)
298 1z7u_A Hypothetical protein EF 91.1 0.27 9.3E-06 34.9 4.5 54 3-64 27-90 (112)
299 3df8_A Possible HXLR family tr 91.0 0.32 1.1E-05 34.6 4.8 47 14-64 39-93 (111)
300 2qfm_A Spermine synthase; sper 90.9 0.098 3.4E-06 45.5 2.3 15 107-121 187-201 (364)
301 2htj_A P fimbrial regulatory p 90.9 0.2 6.8E-06 33.4 3.4 37 3-46 5-41 (81)
302 2hzt_A Putative HTH-type trans 90.7 0.22 7.7E-06 35.1 3.7 47 14-64 26-82 (107)
303 2b9e_A NOL1/NOP2/SUN domain fa 90.6 0.25 8.7E-06 41.9 4.5 22 99-121 94-115 (309)
304 3o4f_A Spermidine synthase; am 90.5 0.12 4.2E-06 43.6 2.5 20 151-170 178-197 (294)
305 1ylf_A RRF2 family protein; st 90.2 0.16 5.4E-06 38.3 2.6 43 14-60 29-75 (149)
306 1tbx_A ORF F-93, hypothetical 90.2 0.31 1E-05 33.6 4.0 55 3-64 13-77 (99)
307 4a5n_A Uncharacterized HTH-typ 90.1 0.25 8.5E-06 36.5 3.6 47 14-64 38-94 (131)
308 3k69_A Putative transcription 90.1 0.23 7.7E-06 38.1 3.4 51 6-61 20-75 (162)
309 1oyi_A Double-stranded RNA-bin 90.0 0.21 7E-06 33.9 2.8 49 3-59 22-75 (82)
310 2obp_A Putative DNA-binding pr 89.9 0.52 1.8E-05 32.9 4.9 48 13-64 34-88 (96)
311 2x4h_A Hypothetical protein SS 89.6 0.24 8.1E-06 36.3 3.1 47 14-64 30-78 (139)
312 3bt7_A TRNA (uracil-5-)-methyl 89.6 0.11 3.6E-06 45.2 1.3 13 109-121 214-226 (369)
313 3f6o_A Probable transcriptiona 89.3 0.18 6E-06 36.3 2.2 52 2-61 22-79 (118)
314 2jsc_A Transcriptional regulat 89.1 0.19 6.6E-06 36.1 2.3 50 3-60 26-81 (118)
315 3cuo_A Uncharacterized HTH-typ 89.1 0.32 1.1E-05 33.2 3.3 51 3-60 29-85 (99)
316 1r1u_A CZRA, repressor protein 88.6 0.19 6.5E-06 35.3 1.9 37 2-46 30-66 (106)
317 1u2w_A CADC repressor, cadmium 88.6 0.2 6.9E-06 36.2 2.1 52 2-60 46-103 (122)
318 3iei_A Leucine carboxyl methyl 88.4 0.67 2.3E-05 39.8 5.5 83 134-228 193-281 (334)
319 3bja_A Transcriptional regulat 88.3 0.57 2E-05 33.7 4.5 55 3-64 38-101 (139)
320 1yyv_A Putative transcriptiona 88.2 0.45 1.5E-05 35.0 3.8 53 4-64 41-103 (131)
321 3r0a_A Putative transcriptiona 88.1 0.26 8.9E-06 35.7 2.4 38 3-46 31-69 (123)
322 1qyr_A KSGA, high level kasuga 88.1 0.3 1E-05 40.2 3.1 28 96-124 10-37 (252)
323 2fsw_A PG_0823 protein; alpha- 88.0 0.36 1.2E-05 33.9 3.1 47 14-64 37-93 (107)
324 2f2e_A PA1607; transcription f 87.9 0.49 1.7E-05 35.4 3.9 46 14-64 36-90 (146)
325 3uzu_A Ribosomal RNA small sub 87.9 0.33 1.1E-05 40.5 3.3 25 96-121 31-55 (279)
326 3k0l_A Repressor protein; heli 87.9 0.87 3E-05 34.1 5.4 55 3-64 51-114 (162)
327 3bdd_A Regulatory protein MARR 87.8 0.69 2.4E-05 33.4 4.7 55 3-64 36-99 (142)
328 3g3z_A NMB1585, transcriptiona 87.8 0.62 2.1E-05 34.0 4.4 55 3-64 36-99 (145)
329 2hr3_A Probable transcriptiona 87.6 0.96 3.3E-05 32.9 5.4 55 3-64 40-104 (147)
330 3nrv_A Putative transcriptiona 87.5 0.63 2.1E-05 34.1 4.3 55 3-64 45-108 (148)
331 3oop_A LIN2960 protein; protei 87.5 0.55 1.9E-05 34.2 4.0 55 3-64 42-105 (143)
332 3ech_A MEXR, multidrug resista 87.5 0.55 1.9E-05 34.2 4.0 55 3-64 42-105 (142)
333 2nnn_A Probable transcriptiona 87.4 0.5 1.7E-05 34.1 3.7 55 3-64 43-106 (140)
334 2fu4_A Ferric uptake regulatio 87.4 0.32 1.1E-05 32.4 2.4 39 3-46 22-65 (83)
335 3f6v_A Possible transcriptiona 87.3 0.32 1.1E-05 36.8 2.5 53 2-62 62-120 (151)
336 2pg4_A Uncharacterized protein 87.2 0.34 1.2E-05 33.1 2.5 53 6-64 23-83 (95)
337 3cdh_A Transcriptional regulat 87.2 0.8 2.7E-05 33.8 4.8 55 3-64 48-111 (155)
338 3fm5_A Transcriptional regulat 87.2 0.71 2.4E-05 34.0 4.4 56 3-64 44-108 (150)
339 2eth_A Transcriptional regulat 87.0 1 3.5E-05 33.3 5.3 55 3-64 49-112 (154)
340 2kko_A Possible transcriptiona 87.0 0.13 4.6E-06 36.4 0.3 36 3-46 30-65 (108)
341 1xd7_A YWNA; structural genomi 87.0 0.65 2.2E-05 34.6 4.1 49 6-61 17-69 (145)
342 2qvo_A Uncharacterized protein 86.8 0.56 1.9E-05 32.1 3.4 46 15-64 30-81 (95)
343 2gxg_A 146AA long hypothetical 86.8 1.1 3.6E-05 32.6 5.2 47 14-64 49-104 (146)
344 1jgs_A Multiple antibiotic res 86.5 0.89 3.1E-05 32.7 4.6 55 3-64 39-102 (138)
345 1r1t_A Transcriptional repress 86.1 0.29 9.8E-06 35.5 1.6 37 2-46 50-86 (122)
346 3ftd_A Dimethyladenosine trans 86.0 0.3 1E-05 40.0 1.9 25 96-121 20-44 (249)
347 2fa5_A Transcriptional regulat 85.8 0.94 3.2E-05 33.7 4.5 55 3-64 54-117 (162)
348 3bj6_A Transcriptional regulat 85.8 0.99 3.4E-05 33.1 4.6 55 3-64 45-108 (152)
349 2rdp_A Putative transcriptiona 85.7 0.88 3E-05 33.3 4.3 55 3-64 47-110 (150)
350 2fbh_A Transcriptional regulat 85.7 1.1 3.7E-05 32.5 4.7 55 3-64 42-106 (146)
351 1lj9_A Transcriptional regulat 85.4 0.9 3.1E-05 33.0 4.2 55 3-64 34-97 (144)
352 3bpv_A Transcriptional regulat 85.4 0.66 2.2E-05 33.4 3.4 55 3-64 34-97 (138)
353 3cjn_A Transcriptional regulat 85.0 0.9 3.1E-05 33.8 4.1 55 3-64 57-120 (162)
354 3khk_A Type I restriction-modi 84.7 1 3.4E-05 41.3 4.9 19 152-170 376-394 (544)
355 3e6m_A MARR family transcripti 84.6 1 3.5E-05 33.6 4.2 55 3-64 58-121 (161)
356 2h09_A Transcriptional regulat 84.0 1.1 3.8E-05 33.3 4.2 47 14-64 53-102 (155)
357 2pex_A Transcriptional regulat 83.9 1.1 3.8E-05 32.9 4.2 55 3-64 52-115 (153)
358 2nyx_A Probable transcriptiona 83.8 0.99 3.4E-05 34.0 3.9 55 3-64 50-113 (168)
359 3eco_A MEPR; mutlidrug efflux 83.7 1.1 3.7E-05 32.3 3.9 57 3-64 36-101 (139)
360 3tgn_A ADC operon repressor AD 83.7 1.2 4E-05 32.4 4.2 54 3-64 43-105 (146)
361 3bro_A Transcriptional regulat 83.6 1.2 4E-05 32.2 4.1 57 3-64 39-104 (141)
362 2a61_A Transcriptional regulat 83.6 0.8 2.7E-05 33.3 3.2 55 3-64 38-101 (145)
363 3deu_A Transcriptional regulat 83.6 1.1 3.7E-05 33.8 4.0 56 3-64 58-122 (166)
364 3s2w_A Transcriptional regulat 83.6 1 3.5E-05 33.5 3.8 55 3-64 55-118 (159)
365 3lkz_A Non-structural protein 83.5 3.3 0.00011 35.0 7.1 24 97-121 84-107 (321)
366 2fbi_A Probable transcriptiona 83.5 0.74 2.5E-05 33.2 3.0 55 3-64 41-104 (142)
367 3u1d_A Uncharacterized protein 83.4 2.8 9.7E-05 31.6 6.2 57 3-64 34-105 (151)
368 4fzv_A Putative methyltransfer 83.3 1 3.5E-05 39.0 4.2 25 151-175 264-288 (359)
369 3hsr_A HTH-type transcriptiona 83.2 0.59 2E-05 34.1 2.3 47 14-64 49-104 (140)
370 2bv6_A MGRA, HTH-type transcri 82.9 1.4 4.6E-05 31.9 4.2 55 3-64 42-105 (142)
371 2frh_A SARA, staphylococcal ac 82.7 1.1 3.7E-05 32.3 3.5 47 14-64 52-107 (127)
372 1jhg_A Trp operon repressor; c 82.6 0.78 2.7E-05 32.3 2.6 37 2-46 49-85 (101)
373 2k4m_A TR8_protein, UPF0146 pr 82.5 2.7 9.3E-05 31.7 5.7 16 106-121 33-48 (153)
374 2fe3_A Peroxide operon regulat 82.2 1.8 6.2E-05 32.1 4.7 38 3-46 27-69 (145)
375 1sfx_A Conserved hypothetical 82.0 0.94 3.2E-05 31.0 2.9 37 3-46 25-61 (109)
376 3v97_A Ribosomal RNA large sub 81.9 2.3 7.8E-05 40.2 6.3 25 96-121 179-203 (703)
377 1s3j_A YUSO protein; structura 81.9 1.1 3.7E-05 33.0 3.4 55 3-64 42-105 (155)
378 3jw4_A Transcriptional regulat 81.8 1.3 4.4E-05 32.4 3.8 56 4-64 47-111 (148)
379 4hbl_A Transcriptional regulat 81.8 0.95 3.3E-05 33.3 3.0 55 3-64 46-109 (149)
380 2zwa_A Leucine carboxyl methyl 81.7 4.2 0.00015 38.1 8.1 84 134-227 219-308 (695)
381 2o03_A Probable zinc uptake re 81.5 1.4 4.7E-05 32.1 3.8 38 3-46 16-58 (131)
382 2lkp_A Transcriptional regulat 81.3 0.86 2.9E-05 32.3 2.5 37 2-46 36-72 (119)
383 4aik_A Transcriptional regulat 81.0 2.7 9.2E-05 31.2 5.3 54 5-64 38-100 (151)
384 1bja_A Transcription regulator 80.8 1 3.5E-05 31.3 2.6 61 4-71 22-85 (95)
385 3hrs_A Metalloregulator SCAR; 80.6 1.7 5.9E-05 34.5 4.3 145 14-172 19-183 (214)
386 1q1h_A TFE, transcription fact 80.5 1 3.5E-05 31.5 2.6 38 3-46 23-60 (110)
387 3nqo_A MARR-family transcripti 80.1 1.8 6.1E-05 33.4 4.2 56 4-64 47-111 (189)
388 3p8z_A Mtase, non-structural p 79.9 1.7 5.8E-05 35.6 4.0 25 96-121 67-91 (267)
389 4auk_A Ribosomal RNA large sub 79.7 5.1 0.00018 34.8 7.3 63 106-171 209-306 (375)
390 3boq_A Transcriptional regulat 79.5 1.6 5.4E-05 32.3 3.6 56 3-64 52-116 (160)
391 2qww_A Transcriptional regulat 79.3 1.8 6.3E-05 31.7 3.9 55 3-64 46-111 (154)
392 2dbb_A Putative HTH-type trans 79.1 2 6.7E-05 31.8 4.0 37 3-46 14-50 (151)
393 2cfx_A HTH-type transcriptiona 79.0 1.6 5.5E-05 32.2 3.4 37 3-46 10-46 (144)
394 3f3x_A Transcriptional regulat 78.7 1.4 4.8E-05 32.0 3.0 54 3-64 42-104 (144)
395 1sfu_A 34L protein; protein/Z- 78.7 2 6.9E-05 28.4 3.4 30 13-46 27-56 (75)
396 2zkz_A Transcriptional repress 78.5 0.88 3E-05 31.4 1.7 43 14-60 40-87 (99)
397 3k2z_A LEXA repressor; winged 78.2 1.5 5E-05 34.3 3.1 36 5-46 16-51 (196)
398 2dk5_A DNA-directed RNA polyme 78.0 2.6 8.8E-05 28.9 4.0 39 3-46 25-63 (91)
399 1z91_A Organic hydroperoxide r 77.6 1.1 3.7E-05 32.6 2.1 55 3-64 45-108 (147)
400 2w25_A Probable transcriptiona 77.5 1.8 6.3E-05 32.0 3.4 37 3-46 12-48 (150)
401 2p5v_A Transcriptional regulat 77.0 1.9 6.6E-05 32.4 3.4 37 3-46 15-51 (162)
402 2vn2_A DNAD, chromosome replic 76.6 2.7 9.1E-05 30.5 4.0 46 15-64 51-107 (128)
403 2cyy_A Putative HTH-type trans 76.4 2.1 7.1E-05 31.8 3.4 37 3-46 12-48 (151)
404 2cg4_A Regulatory protein ASNC 76.2 2.1 7E-05 31.8 3.3 37 3-46 13-49 (152)
405 2fbk_A Transcriptional regulat 75.8 1.4 4.9E-05 33.6 2.4 58 3-64 74-140 (181)
406 4fx0_A Probable transcriptiona 75.4 2.3 7.9E-05 31.4 3.4 47 14-64 51-105 (148)
407 4b8x_A SCO5413, possible MARR- 75.4 1.4 4.7E-05 32.6 2.1 47 14-64 50-105 (147)
408 3lkd_A Type I restriction-modi 75.2 5.8 0.0002 36.2 6.6 19 152-170 338-357 (542)
409 3lsg_A Two-component response 74.9 3.9 0.00013 28.0 4.3 29 14-46 18-46 (103)
410 2d1h_A ST1889, 109AA long hypo 74.7 1.5 5.2E-05 29.9 2.1 29 14-46 35-63 (109)
411 1m6y_A S-adenosyl-methyltransf 74.7 1.8 6.1E-05 36.5 2.9 25 96-121 15-39 (301)
412 2pn6_A ST1022, 150AA long hypo 74.5 2.2 7.4E-05 31.5 3.1 37 3-46 8-44 (150)
413 3i4p_A Transcriptional regulat 74.0 2.3 7.7E-05 32.1 3.1 37 3-46 8-44 (162)
414 1tc3_C Protein (TC3 transposas 74.0 2.7 9.4E-05 23.9 2.9 25 14-42 20-44 (51)
415 2fxa_A Protease production reg 73.9 2.7 9.2E-05 33.0 3.6 55 3-64 53-116 (207)
416 2k9s_A Arabinose operon regula 73.6 4.6 0.00016 27.8 4.4 38 5-46 10-47 (107)
417 2ia0_A Putative HTH-type trans 73.1 2.7 9.3E-05 32.1 3.4 37 3-46 22-58 (171)
418 1i1g_A Transcriptional regulat 72.8 2.9 0.0001 30.3 3.4 37 3-46 9-45 (141)
419 3i71_A Ethanolamine utilizatio 72.6 3.2 0.00011 25.9 2.9 49 5-59 10-60 (68)
420 2e1c_A Putative HTH-type trans 71.9 3 0.0001 31.8 3.4 37 3-46 32-68 (171)
421 3s1s_A Restriction endonucleas 71.8 8.2 0.00028 37.2 6.9 20 151-170 445-464 (878)
422 3kp7_A Transcriptional regulat 71.7 3.6 0.00012 30.0 3.7 54 3-64 43-107 (151)
423 3mwm_A ZUR, putative metal upt 71.3 3 0.0001 30.7 3.1 38 3-46 19-61 (139)
424 1ku9_A Hypothetical protein MJ 70.6 2.8 9.6E-05 30.3 2.9 29 14-46 40-68 (152)
425 3cta_A Riboflavin kinase; stru 70.6 2.1 7.1E-05 34.3 2.3 58 3-64 12-78 (230)
426 2p5k_A Arginine repressor; DNA 70.3 4.6 0.00016 24.8 3.5 29 14-46 18-51 (64)
427 2k4b_A Transcriptional regulat 70.1 1.8 6.1E-05 30.2 1.5 41 3-46 40-80 (99)
428 3kor_A Possible Trp repressor; 69.9 2.7 9.2E-05 30.4 2.4 35 2-45 67-101 (119)
429 2xvc_A ESCRT-III, SSO0910; cel 69.2 2.3 7.9E-05 26.5 1.7 38 3-46 15-52 (59)
430 2xig_A Ferric uptake regulatio 68.8 3.7 0.00013 30.6 3.2 38 3-46 32-74 (150)
431 3u2r_A Regulatory protein MARR 68.0 2.8 9.6E-05 31.3 2.4 56 4-64 52-116 (168)
432 1uly_A Hypothetical protein PH 67.6 3.4 0.00012 32.3 2.9 36 3-46 25-60 (192)
433 1j5y_A Transcriptional regulat 67.6 3.9 0.00013 31.6 3.2 50 3-58 26-78 (187)
434 1jko_C HIN recombinase, DNA-in 67.3 3.9 0.00013 23.6 2.5 23 15-41 21-43 (52)
435 2qy6_A UPF0209 protein YFCK; s 66.0 2.6 8.8E-05 34.6 1.9 27 212-238 219-245 (257)
436 3f2g_A Alkylmercury lyase; MER 65.7 4.9 0.00017 32.2 3.5 37 3-46 27-63 (220)
437 3mn2_A Probable ARAC family tr 65.2 5.8 0.0002 27.3 3.5 29 14-46 17-45 (108)
438 2yu3_A DNA-directed RNA polyme 64.8 3.3 0.00011 28.6 2.0 39 3-46 42-80 (95)
439 1p6r_A Penicillinase repressor 64.8 2.7 9.1E-05 27.6 1.5 37 3-46 14-54 (82)
440 1fx7_A Iron-dependent represso 64.2 3.9 0.00013 32.7 2.7 46 15-64 22-72 (230)
441 2jpc_A SSRB; DNA binding prote 64.2 6.5 0.00022 23.8 3.2 27 15-45 13-39 (61)
442 2v79_A DNA replication protein 64.2 4.9 0.00017 29.5 3.0 47 14-64 50-107 (135)
443 2pjp_A Selenocysteine-specific 64.1 3.9 0.00013 29.2 2.4 83 14-104 19-105 (121)
444 3axs_A Probable N(2),N(2)-dime 63.2 1.9 6.4E-05 37.8 0.6 21 151-171 138-158 (392)
445 3oio_A Transcriptional regulat 62.9 6.5 0.00022 27.3 3.4 37 5-46 14-50 (113)
446 1uxc_A FRUR (1-57), fructose r 62.9 5 0.00017 25.5 2.5 22 16-41 1-22 (65)
447 2esh_A Conserved hypothetical 62.9 8.5 0.00029 27.2 4.1 54 3-64 18-90 (118)
448 3r24_A NSP16, 2'-O-methyl tran 62.8 5.1 0.00017 33.9 3.1 24 147-170 193-216 (344)
449 2r6z_A UPF0341 protein in RSP 62.7 3.1 0.00011 34.0 1.8 16 106-121 81-96 (258)
450 3oou_A LIN2118 protein; protei 62.6 6.5 0.00022 27.1 3.3 29 14-46 20-48 (108)
451 2o3f_A Putative HTH-type trans 62.5 6.3 0.00022 27.8 3.2 28 15-46 39-66 (111)
452 2x48_A CAG38821; archeal virus 62.3 4.9 0.00017 23.9 2.3 24 14-41 30-53 (55)
453 4esf_A PADR-like transcription 62.1 9.3 0.00032 27.1 4.1 53 4-64 17-86 (117)
454 1mzb_A Ferric uptake regulatio 61.7 7.8 0.00027 28.2 3.8 39 3-46 23-66 (136)
455 1ku3_A Sigma factor SIGA; heli 61.6 6.3 0.00021 25.1 2.9 24 14-41 29-52 (73)
456 2km1_A Protein DRE2; yeast, an 60.6 4.4 0.00015 30.0 2.1 19 151-169 78-96 (136)
457 3frw_A Putative Trp repressor 60.6 5.1 0.00018 28.3 2.4 36 2-46 50-85 (107)
458 2qlz_A Transcription factor PF 60.1 1.8 6.1E-05 35.1 -0.1 36 3-46 17-52 (232)
459 1bia_A BIRA bifunctional prote 59.6 5.4 0.00018 33.7 2.9 49 3-58 10-62 (321)
460 2gmg_A Hypothetical protein PF 59.5 3.5 0.00012 29.1 1.3 21 3-27 16-36 (105)
461 3mkl_A HTH-type transcriptiona 59.2 8.5 0.00029 27.1 3.5 34 5-43 14-47 (120)
462 1p4x_A Staphylococcal accessor 58.7 10 0.00035 30.8 4.3 56 4-64 164-228 (250)
463 3lmm_A Uncharacterized protein 58.7 7.4 0.00025 35.9 3.8 55 3-64 435-496 (583)
464 3iwf_A Transcription regulator 58.4 6.7 0.00023 27.5 2.8 28 15-46 35-62 (107)
465 2p7v_B Sigma-70, RNA polymeras 58.4 7.5 0.00026 24.3 2.8 26 14-43 24-49 (68)
466 2ijl_A AGR_C_4647P, molybdenum 58.0 7 0.00024 28.7 2.9 54 2-64 30-93 (135)
467 2pij_A Prophage PFL 6 CRO; tra 57.9 8.2 0.00028 23.8 2.9 31 3-42 6-36 (67)
468 3f8b_A Transcriptional regulat 57.8 13 0.00045 26.2 4.3 53 4-64 18-89 (116)
469 3c6k_A Spermine synthase; sper 57.4 7.6 0.00026 33.8 3.4 21 150-170 310-330 (381)
470 1v4r_A Transcriptional repress 57.0 6.2 0.00021 27.0 2.3 29 14-46 33-62 (102)
471 2p4w_A Transcriptional regulat 56.3 4.2 0.00014 32.0 1.5 36 3-46 20-55 (202)
472 4g6q_A Putative uncharacterize 56.2 4.2 0.00014 31.4 1.4 37 2-46 27-64 (182)
473 1xma_A Predicted transcription 56.0 8.7 0.0003 28.4 3.2 54 3-64 46-118 (145)
474 2ek5_A Predicted transcription 56.0 18 0.00061 26.1 4.8 43 12-58 24-71 (129)
475 1tty_A Sigma-A, RNA polymerase 55.4 8.8 0.0003 25.4 2.9 24 14-41 37-60 (87)
476 1z6r_A MLC protein; transcript 55.4 9.6 0.00033 32.9 3.8 37 3-46 21-57 (406)
477 3tqn_A Transcriptional regulat 55.3 10 0.00035 26.6 3.3 43 13-59 30-77 (113)
478 1bl0_A Protein (multiple antib 55.1 10 0.00035 27.0 3.4 37 5-46 18-54 (129)
479 1fse_A GERE; helix-turn-helix 54.2 10 0.00034 23.8 2.9 28 14-45 25-52 (74)
480 3hhh_A Transcriptional regulat 54.1 14 0.00047 26.2 3.8 53 4-64 19-88 (116)
481 1hsj_A Fusion protein consisti 53.6 12 0.00042 32.9 4.3 56 4-64 410-474 (487)
482 1neq_A DNA-binding protein NER 53.4 6.1 0.00021 25.7 1.7 22 14-39 21-42 (74)
483 2qq9_A Diphtheria toxin repres 53.4 15 0.00052 29.1 4.4 46 15-64 24-72 (226)
484 1okr_A MECI, methicillin resis 53.1 4.9 0.00017 28.2 1.3 55 3-64 15-80 (123)
485 1ssz_A Pulmonary surfactant-as 53.0 6.6 0.00023 20.8 1.4 19 150-168 4-22 (34)
486 3vyw_A MNMC2; tRNA wobble urid 52.3 13 0.00044 31.3 4.0 28 211-238 231-258 (308)
487 2vxz_A Pyrsv_GP04; viral prote 52.3 7.1 0.00024 29.4 2.0 36 3-46 16-51 (165)
488 3gva_A Alkyltransferase-like p 51.8 15 0.0005 26.3 3.6 39 3-43 10-48 (116)
489 1lva_A Selenocysteine-specific 51.5 13 0.00043 30.3 3.7 81 15-104 157-241 (258)
490 3fxq_A LYSR type regulator of 51.3 9.7 0.00033 30.8 3.0 54 2-64 8-66 (305)
491 3ll7_A Putative methyltransfer 51.2 12 0.00042 32.8 3.8 15 107-121 92-106 (410)
492 1yg2_A Gene activator APHA; vi 51.1 19 0.00064 27.4 4.5 54 3-64 7-79 (179)
493 1af7_A Chemotaxis receptor met 50.9 5.5 0.00019 32.9 1.4 89 32-121 13-118 (274)
494 2p8t_A Hypothetical protein PH 50.7 13 0.00045 29.2 3.5 47 14-64 29-77 (200)
495 3l7w_A Putative uncharacterize 49.8 16 0.00054 25.3 3.6 54 3-64 14-81 (108)
496 3t72_q RNA polymerase sigma fa 49.7 13 0.00043 25.7 3.0 25 14-42 38-62 (99)
497 2oyr_A UPF0341 protein YHIQ; a 49.7 8.5 0.00029 31.5 2.4 24 97-121 76-101 (258)
498 1ixc_A CBNR, LYSR-type regulat 49.3 8.6 0.00029 30.7 2.4 54 2-64 7-65 (294)
499 2l0k_A Stage III sporulation p 49.2 8.1 0.00028 26.5 1.8 31 3-41 12-42 (93)
500 3ulq_B Transcriptional regulat 48.8 15 0.00051 24.7 3.2 34 3-45 37-70 (90)
No 1
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=100.00 E-value=2.1e-48 Score=343.64 Aligned_cols=226 Identities=20% Similarity=0.304 Sum_probs=202.3
Q ss_pred CccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCCCCeEecChhhHHHH----------
Q 045543 1 MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDDRRLQRLAPVAKYVL---------- 64 (239)
Q Consensus 1 Lgifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~~~~y~~t~~s~~l~---------- 64 (239)
|||||+|++.+ +|+|++|||+++|+ +++.+.|+||+|++. . +...+.|+||+.++.|+
T Consensus 31 Lglfd~L~~~~--~p~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s~~~l~~~~~~~~~~ 104 (353)
T 4a6d_A 31 LGVFDLLAEAP--GPLDVAAVAAGVRA----SAHGTELLLDICVSLKLLKVETRGGKAFYRNTELSSDYLTTVSPTSQCS 104 (353)
T ss_dssp HTHHHHHHHSS--SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHSTTSTTCCHH
T ss_pred cCHHHHHhcCC--CCCCHHHHHHhhCc----CHHHHHHHHHHHHHCCCEEEeccCccceeeCCHHHHHHhhcCCchHHHH
Confidence 68999999854 79999999999999 999999999999997 1 33456899999997665
Q ss_pred -----------------------------hcC---CCcccccccCchHHHHHHHHHHhcccccHHHHHhhccCCCCcceE
Q 045543 65 -----------------------------HYG---IGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQL 112 (239)
Q Consensus 65 -----------------------------~~g---~~~~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~v 112 (239)
++| .++|+++.++|+....|+++|...+...++.+++.++ |++..+|
T Consensus 105 ~~~~~~~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~aM~~~~~~~~~~~~~~~~-~~~~~~v 183 (353)
T 4a6d_A 105 MLKYMGRTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGERLQFMQALQEVWSVNGRSVLTAFD-LSVFPLM 183 (353)
T ss_dssp HHHHHHHTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHHHHHHHHHHHHTTHHHHHHHHHHSSC-GGGCSEE
T ss_pred HHHHhCHHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCeE
Confidence 223 3467888899999999999999998888899999999 9999999
Q ss_pred EEeCCCCCC----------------------------------------Ccccccc-ccCCcceeeechhhhcCChhHHH
Q 045543 113 VDVGGGCGK----------------------------------------CGWKMFQ-KILNGDAILMKLILRNWDDEHCL 151 (239)
Q Consensus 113 lDvGGG~G~----------------------------------------~~gD~~~-~~p~~D~~~l~~vlH~~~d~~~~ 151 (239)
||||||+|. ++||||+ +.|.+|+|++++|||+|+|++|+
T Consensus 184 ~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~~D~~~~~~vlh~~~d~~~~ 263 (353)
T 4a6d_A 184 CDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPEADLYILARVLHDWADGKCS 263 (353)
T ss_dssp EEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTSCCCCCSEEEEESSGGGSCHHHHH
T ss_pred EeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCccccCCCCCceEEEeeeecccCCHHHHH
Confidence 999999999 7899998 45557999999999999999999
Q ss_pred HHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcCCc
Q 045543 152 SLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCN 231 (239)
Q Consensus 152 ~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~~~ 231 (239)
+||++|+++|+|||+|+|+|.+++++...+ .....+|++||+++ +|++||.+|| ++||++|||+.++++++++.
T Consensus 264 ~iL~~~~~al~pgg~lli~e~~~~~~~~~~---~~~~~~dl~ml~~~-~g~ert~~e~--~~ll~~AGf~~v~v~~~~~~ 337 (353)
T 4a6d_A 264 HLLERIYHTCKPGGGILVIESLLDEDRRGP---LLTQLYSLNMLVQT-EGQERTPTHY--HMLLSSAGFRDFQFKKTGAI 337 (353)
T ss_dssp HHHHHHHHHCCTTCEEEEEECCCCTTSCCC---HHHHHHHHHHHHSS-SCCCCCHHHH--HHHHHHHTCEEEEEECCSSS
T ss_pred HHHHHHHhhCCCCCEEEEEEeeeCCCCCCC---HHHHHHHHHHHHhC-CCcCCCHHHH--HHHHHHCCCceEEEEEcCCc
Confidence 999999999999999999999998876654 34567899999987 9999999999 99999999999999999999
Q ss_pred eeEEEEEC
Q 045543 232 FYIMEFIK 239 (239)
Q Consensus 232 ~~vie~~k 239 (239)
+++|+|+|
T Consensus 338 ~~~i~ArK 345 (353)
T 4a6d_A 338 YDAILARK 345 (353)
T ss_dssp CEEEEEEC
T ss_pred eEEEEEEe
Confidence 99999998
No 2
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=100.00 E-value=4e-43 Score=311.04 Aligned_cols=236 Identities=42% Similarity=0.775 Sum_probs=201.2
Q ss_pred CccchHhHhcCCCCCCCHHHHHHhCCC-CCCCChhhHHHHHHHhccC---CCC-----C---CCeEecChhhHHHH----
Q 045543 1 MGVFEIMAKAGPRAKLSAAEIEAQMPS-HNPNAAVMLDRVLRRSLSS---AGD-----D---RRLQRLAPVAKYVL---- 64 (239)
Q Consensus 1 Lgifd~L~~~g~~~~~t~~eLA~~~g~-~~~~~~~~l~rlL~~L~~~---~~~-----~---~~~y~~t~~s~~l~---- 64 (239)
|||||+|+++| ++|+|++|||+++|+ +++.++..|+||||+|++. .+. + +++|++|+.++.|+
T Consensus 43 Lgifd~L~~~g-~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~ 121 (364)
T 3p9c_A 43 LGLLEILVAAG-GKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNED 121 (364)
T ss_dssp HTHHHHHHHTT-TCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEEEEEECSSSCEEEEEEECGGGGGSSCCTT
T ss_pred CChHHHHhhcC-CCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEEeccccCCCCcCCEEecCHHHHHHcCCCC
Confidence 68999999864 369999999999995 3121233999999999998 222 1 47899999987554
Q ss_pred ------------------------------------hcCCCcccccccCchHHHHHHHHHHhcccccHHHHHhhccCCCC
Q 045543 65 ------------------------------------HYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEK 108 (239)
Q Consensus 65 ------------------------------------~~g~~~~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~ 108 (239)
++|.++|+|+.++|+..+.|+++|...+....+.+++.+++|++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~ 201 (364)
T 3p9c_A 122 GVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGFEG 201 (364)
T ss_dssp SCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTT
T ss_pred CCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhcCCCHHHHHHhCHHHHHHHHHHHHHhhHHHHHHHHHhcccccC
Confidence 34567889999999999999999999888777889999977888
Q ss_pred cceEEEeCCCCCC----------------------------------CccccccccCCcceeeechhhhcCChhHHHHHH
Q 045543 109 IKQLVDVGGGCGK----------------------------------CGWKMFQKILNGDAILMKLILRNWDDEHCLSLL 154 (239)
Q Consensus 109 ~~~vlDvGGG~G~----------------------------------~~gD~~~~~p~~D~~~l~~vlH~~~d~~~~~iL 154 (239)
..+|||||||+|. +.+|||+++|++|+|+++++||+|+|+++.++|
T Consensus 202 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~~L 281 (364)
T 3p9c_A 202 LGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLL 281 (364)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEeCCcCCCCCCCCEEEehHHhccCCHHHHHHHH
Confidence 9999999999999 678999988877999999999999999999999
Q ss_pred HHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcCCceeE
Q 045543 155 KNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCNFYI 234 (239)
Q Consensus 155 ~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~~~~~v 234 (239)
++++++|+|||+|+|+|.+.++.+..+........+|+.|++.+.+|++||.+|| +++|+++||+.++++++++..++
T Consensus 282 ~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~--~~ll~~AGF~~v~~~~~~~~~~v 359 (364)
T 3p9c_A 282 KNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREF--QALARGAGFTGVKSTYIYANAWA 359 (364)
T ss_dssp HHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHH--HHHHHHTTCCEEEEEEEETTEEE
T ss_pred HHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHH--HHHHHHCCCceEEEEEcCCceEE
Confidence 9999999999999999999887655432333446789999854449999999999 99999999999999999999999
Q ss_pred EEEEC
Q 045543 235 MEFIK 239 (239)
Q Consensus 235 ie~~k 239 (239)
||++|
T Consensus 360 ie~~k 364 (364)
T 3p9c_A 360 IEFTK 364 (364)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99997
No 3
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=100.00 E-value=7e-43 Score=309.85 Aligned_cols=237 Identities=46% Similarity=0.769 Sum_probs=203.1
Q ss_pred CccchHhHhc-CCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---CCC----C----CCeEecChhhHHHH----
Q 045543 1 MGVFEIMAKA-GPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---AGD----D----RRLQRLAPVAKYVL---- 64 (239)
Q Consensus 1 Lgifd~L~~~-g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~~~----~----~~~y~~t~~s~~l~---- 64 (239)
|||||+|++. |+++|+|++|||+++|..++.+++.|.|+||+|++. .+. + +++|++|+.++.|+
T Consensus 44 Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~ 123 (368)
T 3reo_A 44 LDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNED 123 (368)
T ss_dssp TTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTHHHHSCCTT
T ss_pred CCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCeEEecccCCCCcccceeCcCHHHHHHhCCCC
Confidence 7999999986 655789999999999832121234999999999998 221 1 37899999998765
Q ss_pred ------------------------------------hcCCCcccccccCchHHHHHHHHHHhcccccHHHHHhhccCCCC
Q 045543 65 ------------------------------------HYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEK 108 (239)
Q Consensus 65 ------------------------------------~~g~~~~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~ 108 (239)
++|.++|+|+.++|+..+.|+++|...+....+.+++.+++|++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~ 203 (368)
T 3reo_A 124 GVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEG 203 (368)
T ss_dssp SCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHHHHHSSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTT
T ss_pred CCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHHHHHhCCCHHHHHhhCHHHHHHHHHHHHhhhhhHHHHHHHhcccccC
Confidence 34667889999999999999999999888778889999877888
Q ss_pred cceEEEeCCCCCC----------------------------------CccccccccCCcceeeechhhhcCChhHHHHHH
Q 045543 109 IKQLVDVGGGCGK----------------------------------CGWKMFQKILNGDAILMKLILRNWDDEHCLSLL 154 (239)
Q Consensus 109 ~~~vlDvGGG~G~----------------------------------~~gD~~~~~p~~D~~~l~~vlH~~~d~~~~~iL 154 (239)
..+|||||||+|. +.+|+++++|++|+|+++++||+|+|+++.++|
T Consensus 204 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~~l 283 (368)
T 3reo_A 204 LTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLL 283 (368)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSEEEEESCGGGBCHHHHHHHH
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEecCCCCCCCCCCEEEEechhhcCCHHHHHHHH
Confidence 8999999999999 678999888877999999999999999999999
Q ss_pred HHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcCCceeE
Q 045543 155 KNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCNFYI 234 (239)
Q Consensus 155 ~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~~~~~v 234 (239)
++++++|+|||+|+|+|.+.++....+........+|+.|+..+.+|++||.+|| +++|+++||+.+++.+..+..++
T Consensus 284 ~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~--~~ll~~AGF~~v~~~~~~~~~~v 361 (368)
T 3reo_A 284 KNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEF--QALAMASGFRGFKVASCAFNTYV 361 (368)
T ss_dssp HHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHH--HHHHHHTTCCEEEEEEEETTEEE
T ss_pred HHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHH--HHHHHHCCCeeeEEEEeCCCcEE
Confidence 9999999999999999999887655443334456789999875458999999999 99999999999999999999999
Q ss_pred EEEEC
Q 045543 235 MEFIK 239 (239)
Q Consensus 235 ie~~k 239 (239)
||++|
T Consensus 362 ie~~k 366 (368)
T 3reo_A 362 MEFLK 366 (368)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99987
No 4
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=100.00 E-value=6.4e-41 Score=294.93 Aligned_cols=223 Identities=22% Similarity=0.289 Sum_probs=198.5
Q ss_pred CccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CCCCCCeEecChhhHHHH--------------
Q 045543 1 MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AGDDRRLQRLAPVAKYVL-------------- 64 (239)
Q Consensus 1 Lgifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~~~~~~y~~t~~s~~l~-------------- 64 (239)
|||||+|++ +|+|++|||+++|+ +++.++|+||+|++. .+.++++|++|+.++.|+
T Consensus 45 lglf~~l~~----g~~t~~elA~~~g~----~~~~l~rlLr~l~~~g~l~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~ 116 (348)
T 3lst_A 45 VGVADHLVD----GPRTPAELAAATGT----DADALRRVLRLLAVRDVVRESDGRFALTDKGAALRSDSPVPARAGILMF 116 (348)
T ss_dssp HTGGGGGTT----SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEETTEEEECTTTGGGSTTSSSCSHHHHHHH
T ss_pred cCchhHhhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEecCCEEecCHHHHHHhcCCCccHHHHHHHh
Confidence 689999987 79999999999999 999999999999998 222789999999876543
Q ss_pred -------------------------hcCCCcccccccCchHHHHHHHHHHhcccccHHHHHhhccCCCCcceEEEeCCCC
Q 045543 65 -------------------------HYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGC 119 (239)
Q Consensus 65 -------------------------~~g~~~~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGGG~ 119 (239)
.+|.++|+|+.++|+..+.|+++|...+....+.+++.++ |++..+|||||||+
T Consensus 117 ~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~vLDvG~G~ 195 (348)
T 3lst_A 117 TDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILARAGD-FPATGTVADVGGGR 195 (348)
T ss_dssp TSHHHHHHHHTHHHHTCTTCCCHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHTTHHHHHHHSC-CCSSEEEEEETCTT
T ss_pred cCHHHHHHHHHHHHHHhcCCChhhHHhCCCHHHHHHhCHHHHHHHHHHHHHhhhhhHHHHHHhCC-ccCCceEEEECCcc
Confidence 2356789999999999999999999998888889999999 99999999999999
Q ss_pred CC---------------------------------------CccccccccCCcceeeechhhhcCChhHHHHHHHHHHhh
Q 045543 120 GK---------------------------------------CGWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEA 160 (239)
Q Consensus 120 G~---------------------------------------~~gD~~~~~p~~D~~~l~~vlH~~~d~~~~~iL~~~~~a 160 (239)
|. +.+|+++++|..|+|+++++||+|+|+++.++|++++++
T Consensus 196 G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~ 275 (348)
T 3lst_A 196 GGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRV 275 (348)
T ss_dssp SHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCCCCCCCcEEEEehhccCCCHHHHHHHHHHHHHh
Confidence 99 567888888844999999999999999999999999999
Q ss_pred CCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcCCceeEEEEEC
Q 045543 161 IPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCNFYIMEFIK 239 (239)
Q Consensus 161 L~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~~~~~vie~~k 239 (239)
|+|||+|+|.|.+.++...+ .....+|+.|+... +|++||.+|| .++|+++||+++++++..+..++||++|
T Consensus 276 LkpgG~l~i~e~~~~~~~~~----~~~~~~d~~~~~~~-~~~~~t~~e~--~~ll~~aGf~~~~~~~~~~~~~vie~~p 347 (348)
T 3lst_A 276 MPAHGRVLVIDAVVPEGNDA----HQSKEMDFMMLAAR-TGQERTAAEL--EPLFTAAGLRLDRVVGTSSVMSIAVGVP 347 (348)
T ss_dssp CCTTCEEEEEECCBCSSSSC----CHHHHHHHHHHHTT-SCCCCBHHHH--HHHHHHTTEEEEEEEECSSSCEEEEEEE
T ss_pred cCCCCEEEEEEeccCCCCCc----chhhhcChhhhhcC-CCcCCCHHHH--HHHHHHCCCceEEEEECCCCcEEEEEEe
Confidence 99999999999988776443 23467899998875 9999999999 9999999999999999778899999986
No 5
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=100.00 E-value=2.3e-40 Score=293.67 Aligned_cols=222 Identities=23% Similarity=0.359 Sum_probs=197.9
Q ss_pred CccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---CCCCCCe-EecChhhHHHH------------
Q 045543 1 MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---AGDDRRL-QRLAPVAKYVL------------ 64 (239)
Q Consensus 1 Lgifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~~~~~~~-y~~t~~s~~l~------------ 64 (239)
|||||+|++ +|+|++|||+++|+ +++.++|+||+|++. .+.++++ |++|+.++.|.
T Consensus 61 lglf~~l~~----g~~t~~eLA~~~g~----~~~~l~rlLr~L~~~g~l~~~~~~~~y~~t~~s~~L~~~~~~~~~~~~~ 132 (369)
T 3gwz_A 61 LGVPELLQE----GPRTATALAEATGA----HEQTLRRLLRLLATVGVFDDLGHDDLFAQNALSAVLLPDPASPVATDAR 132 (369)
T ss_dssp HTTGGGGTT----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSSEECSSTTEEECCHHHHTTSCCTTCHHHHHHH
T ss_pred CChhhhhcC----CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCCEEEeCCCceEecCHHHHHHhcCCchhHHHHHH
Confidence 689999996 79999999999999 999999999999998 3446788 99999886443
Q ss_pred ---------------------------hcCCCcccccccCchHHHHHHHHHHhcccccHHHHHhhccCCCCcceEEEeCC
Q 045543 65 ---------------------------HYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGG 117 (239)
Q Consensus 65 ---------------------------~~g~~~~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGG 117 (239)
.+|.++|+|+.++|+..+.|+++|...+....+.+++.++ |++..+||||||
T Consensus 133 ~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~~vlDvG~ 211 (369)
T 3gwz_A 133 FQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAYD-FSGAATAVDIGG 211 (369)
T ss_dssp HHHSHHHHHHHHTHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CTTCSEEEEETC
T ss_pred HcCCHHHHHHHHhHHHHHhCCCChhHhhcCCCHHHHHHhCHHHHHHHHHHHHHHHhhhHHHHHHhCC-CccCcEEEEeCC
Confidence 2355789999999999999999999988877889999998 999999999999
Q ss_pred CCCC-----------------------------------------CccccccccCC-cceeeechhhhcCChhHHHHHHH
Q 045543 118 GCGK-----------------------------------------CGWKMFQKILN-GDAILMKLILRNWDDEHCLSLLK 155 (239)
Q Consensus 118 G~G~-----------------------------------------~~gD~~~~~p~-~D~~~l~~vlH~~~d~~~~~iL~ 155 (239)
|+|. +.+|+++++|. .|+|+++++||+|+|+++.++|+
T Consensus 212 G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~~~d~~~~~~L~ 291 (369)
T 3gwz_A 212 GRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILR 291 (369)
T ss_dssp TTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCSSCSEEEEESCGGGSCHHHHHHHHH
T ss_pred CccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCCCCCCceEEEhhhhhccCCHHHHHHHHH
Confidence 9999 56888888885 49999999999999999999999
Q ss_pred HHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEE-cCCceeE
Q 045543 156 NCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYES-FVCNFYI 234 (239)
Q Consensus 156 ~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~-~~~~~~v 234 (239)
+++++|+|||+|+|+|.+.++...+ . ...+|+.|+... +|++||.+|| +++|+++||+++++++ ..+..++
T Consensus 292 ~~~~~L~pgG~l~i~e~~~~~~~~~----~-~~~~d~~~~~~~-~g~~~t~~e~--~~ll~~aGf~~~~~~~~~~~~~sv 363 (369)
T 3gwz_A 292 RIATAMKPDSRLLVIDNLIDERPAA----S-TLFVDLLLLVLV-GGAERSESEF--AALLEKSGLRVERSLPCGAGPVRI 363 (369)
T ss_dssp HHHTTCCTTCEEEEEEEBCCSSCCH----H-HHHHHHHHHHHH-SCCCBCHHHH--HHHHHTTTEEEEEEEECSSSSEEE
T ss_pred HHHHHcCCCCEEEEEEeccCCCCCC----c-hhHhhHHHHhhc-CCccCCHHHH--HHHHHHCCCeEEEEEECCCCCcEE
Confidence 9999999999999999998776432 2 467899998876 9999999999 9999999999999999 5788999
Q ss_pred EEEEC
Q 045543 235 MEFIK 239 (239)
Q Consensus 235 ie~~k 239 (239)
||++|
T Consensus 364 ie~~~ 368 (369)
T 3gwz_A 364 VEIRR 368 (369)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99986
No 6
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=100.00 E-value=2.4e-40 Score=289.20 Aligned_cols=219 Identities=26% Similarity=0.413 Sum_probs=192.1
Q ss_pred CccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---CCCCCCeEecChhhHHHH-------------
Q 045543 1 MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---AGDDRRLQRLAPVAKYVL------------- 64 (239)
Q Consensus 1 Lgifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~~~~~~~y~~t~~s~~l~------------- 64 (239)
|||||+|++ +|+|++|||+++|+ +++.++|+||+|++. .+.+++.|++|+.++.|.
T Consensus 28 lglf~~l~~----g~~t~~elA~~~~~----~~~~l~rlLr~l~~~gl~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~ 99 (332)
T 3i53_A 28 LRVADHIAA----GHRTAAEIASAAGA----HADSLDRLLRHLVAVGLFTRDGQGVYGLTEFGEQLRDDHAAGKRKWLDM 99 (332)
T ss_dssp HTHHHHHHT----TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECTTSBEEECTTGGGGSTTCTTCCHHHHCT
T ss_pred cChHHHHhc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEecCCCeEEcCHhHHHHhcCCchhHHHHHHH
Confidence 689999987 79999999999999 999999999999998 445578999999886554
Q ss_pred ---------------------------hcCCCcccccccCchHHHHHHHHHHhcccccHHHHHhhccCCCCcceEEEeCC
Q 045543 65 ---------------------------HYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGG 117 (239)
Q Consensus 65 ---------------------------~~g~~~~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGG 117 (239)
.+|.++|+++.++|+..+.|+.+|...+....+.+++.++ |++..+||||||
T Consensus 100 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~vlDvG~ 178 (332)
T 3i53_A 100 NSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYD-WAALGHVVDVGG 178 (332)
T ss_dssp TSHHHHHGGGGGGHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHTTGGGSSC-CGGGSEEEEETC
T ss_pred cCCHhHHHHHHHHhHHHHhcCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHHHHhHHhhHHHHHHhCC-CCCCCEEEEeCC
Confidence 2244567888889999999999999887776778888898 999999999999
Q ss_pred CCCC-----------------------------------------CccccccccCC-cceeeechhhhcCChhHHHHHHH
Q 045543 118 GCGK-----------------------------------------CGWKMFQKILN-GDAILMKLILRNWDDEHCLSLLK 155 (239)
Q Consensus 118 G~G~-----------------------------------------~~gD~~~~~p~-~D~~~l~~vlH~~~d~~~~~iL~ 155 (239)
|+|. +.+|+++++|. .|+|+++++||+|+|+++.++|+
T Consensus 179 G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~ 258 (332)
T 3i53_A 179 GSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVLHDWDDLSAVAILR 258 (332)
T ss_dssp TTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSCSEEEEESCGGGSCHHHHHHHHH
T ss_pred ChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCCcEEEEehhhccCCHHHHHHHHH
Confidence 9999 56788888885 59999999999999999999999
Q ss_pred HHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcCCceeEE
Q 045543 156 NCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCNFYIM 235 (239)
Q Consensus 156 ~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~~~~~vi 235 (239)
+++++|+|||+|+|+|.+.++. .+ ...+|+.|+... +|++||.+|| .++|+++||+++++++.++ .++|
T Consensus 259 ~~~~~L~pgG~l~i~e~~~~~~-~~------~~~~d~~~~~~~-~~~~~t~~e~--~~ll~~aGf~~~~~~~~~~-~~vi 327 (332)
T 3i53_A 259 RCAEAAGSGGVVLVIEAVAGDE-HA------GTGMDLRMLTYF-GGKERSLAEL--GELAAQAGLAVRAAHPISY-VSIV 327 (332)
T ss_dssp HHHHHHTTTCEEEEEECCCC----C------CHHHHHHHHHHH-SCCCCCHHHH--HHHHHHTTEEEEEEEECSS-SEEE
T ss_pred HHHHhcCCCCEEEEEeecCCCC-Cc------cHHHHHHHHhhC-CCCCCCHHHH--HHHHHHCCCEEEEEEECCC-cEEE
Confidence 9999999999999999988775 22 257889888875 9999999999 9999999999999999988 9999
Q ss_pred EEEC
Q 045543 236 EFIK 239 (239)
Q Consensus 236 e~~k 239 (239)
|++|
T Consensus 328 e~r~ 331 (332)
T 3i53_A 328 EMTA 331 (332)
T ss_dssp EEEE
T ss_pred EEee
Confidence 9985
No 7
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=100.00 E-value=7.6e-39 Score=279.61 Aligned_cols=221 Identities=23% Similarity=0.373 Sum_probs=193.5
Q ss_pred CccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---CCCCCCeEecChhhHHHH-------------
Q 045543 1 MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---AGDDRRLQRLAPVAKYVL------------- 64 (239)
Q Consensus 1 Lgifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~~~~~~~y~~t~~s~~l~------------- 64 (239)
|||||+|++ +|+|++|||+++|+ +++.+.|+||+|++. .+.+++.|++|+.++.|+
T Consensus 31 lgi~~~l~~----~~~t~~ela~~~~~----~~~~l~r~Lr~L~~~g~l~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~ 102 (334)
T 2ip2_A 31 LGLADLIES----GIDSDETLAAAVGS----DAERIHRLMRLLVAFEIFQGDTRDGYANTPTSHLLRDVEGSFRDMVLFY 102 (334)
T ss_dssp TTHHHHHHT----TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHTTSSSTTCSHHHHHHH
T ss_pred cCcHHHHhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCceEecCCCeEecCHHHHHHhCCCccHHHHHHHh
Confidence 799999987 79999999999999 999999999999998 444568999998764332
Q ss_pred ------------------------hcCCCcccccccCchHHHHHHHHHHhcccccHHHHHhhccCCCCcceEEEeCCCCC
Q 045543 65 ------------------------HYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCG 120 (239)
Q Consensus 65 ------------------------~~g~~~~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGGG~G 120 (239)
++|.++|+++.++|+..+.|+++| ..+....+.+++.++ |++ .+|||||||+|
T Consensus 103 ~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m-~~~~~~~~~~~~~~~-~~~-~~vlDvG~G~G 179 (334)
T 2ip2_A 103 GEEFHAAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPRLLD-FRG-RSFVDVGGGSG 179 (334)
T ss_dssp TTHHHHHTTTHHHHHHHCCCHHHHHHSSCHHHHHHHCHHHHHHHHHHH-GGGHHHHHHHHHHSC-CTT-CEEEEETCTTC
T ss_pred cCchhhHHHHHHHHHhcCCChhhhhcCCCHHHHHhhChHHHHHHHHHH-HHHHHHHHHHHHhCC-CCC-CEEEEeCCCch
Confidence 235567888899999999999999 887777788999998 888 99999999999
Q ss_pred C-----------------------------------------CccccccccCCc-ceeeechhhhcCChhHHHHHHHHHH
Q 045543 121 K-----------------------------------------CGWKMFQKILNG-DAILMKLILRNWDDEHCLSLLKNCY 158 (239)
Q Consensus 121 ~-----------------------------------------~~gD~~~~~p~~-D~~~l~~vlH~~~d~~~~~iL~~~~ 158 (239)
. +.+|+++++|.. |+|++++++|+|+++++.++|++++
T Consensus 180 ~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~ 259 (334)
T 2ip2_A 180 ELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCR 259 (334)
T ss_dssp HHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCSSCSEEEEESCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCCCCCEEEEchhccCCCHHHHHHHHHHHH
Confidence 8 467888877765 9999999999999999999999999
Q ss_pred hhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcCCceeEEEEE
Q 045543 159 EAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCNFYIMEFI 238 (239)
Q Consensus 159 ~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~~~~~vie~~ 238 (239)
++|+|||+|+|.|.+.++...+ .....+|+.|+..+ +|++||.+|| .++++++||+++++++.++..++||++
T Consensus 260 ~~L~pgG~l~i~e~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~t~~e~--~~ll~~aGf~~~~~~~~~~~~~~i~~~ 332 (334)
T 2ip2_A 260 EAMAGDGRVVVIERTISASEPS----PMSVLWDVHLFMAC-AGRHRTTEEV--VDLLGRGGFAVERIVDLPMETRMIVAA 332 (334)
T ss_dssp HHSCTTCEEEEEECCBCSSSCC----HHHHHHHHHHHHHH-SCCCCBHHHH--HHHHHHTTEEEEEEEEETTTEEEEEEE
T ss_pred HhcCCCCEEEEEEeccCCCCCc----chhHHhhhHhHhhC-CCcCCCHHHH--HHHHHHCCCceeEEEECCCCCEEEEEE
Confidence 9999999999999988765432 23567889888766 8999999999 999999999999999988889999998
Q ss_pred C
Q 045543 239 K 239 (239)
Q Consensus 239 k 239 (239)
|
T Consensus 333 ~ 333 (334)
T 2ip2_A 333 R 333 (334)
T ss_dssp E
T ss_pred e
Confidence 6
No 8
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=100.00 E-value=1.4e-38 Score=280.98 Aligned_cols=232 Identities=30% Similarity=0.467 Sum_probs=194.1
Q ss_pred CccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---CCC-----C-----CCeEecChhhHHHH---
Q 045543 1 MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---AGD-----D-----RRLQRLAPVAKYVL--- 64 (239)
Q Consensus 1 Lgifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~~~-----~-----~~~y~~t~~s~~l~--- 64 (239)
|||||+|++.| +|+|++|||+++|+ ++.+++.++|+||+|++. .+. + ++.|++|+.++.|+
T Consensus 33 lgif~~L~~~~--~~~t~~eLA~~~g~-~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~g~~~~~y~~t~~s~~l~~~~ 109 (358)
T 1zg3_A 33 LGIADAIHNHG--KPMTLSELASSLKL-HPSKVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGK 109 (358)
T ss_dssp HTHHHHHHHHT--SCEEHHHHHHHTTC-CTTTHHHHHHHHHHHHHTTSEEEEEECCSSSSCCCEEEEEECHHHHTTCTTS
T ss_pred CChHhHHhhcC--CCcCHHHHHHhcCC-CCcchHHHHHHHHHHhhCCcEEEecccccccCCCCCCEEeCCHHHHHHhCCC
Confidence 58999999843 59999999999999 333488999999999998 333 2 47999999876432
Q ss_pred ---------------------------h-----------cCCCcccccccCchHHH--HHHHHHHhcccccHHHHHhhcc
Q 045543 65 ---------------------------H-----------YGIGDYEHAGLDSRFNE--VLNTAMLSHNSIVMNRILDYYK 104 (239)
Q Consensus 65 ---------------------------~-----------~g~~~~~~l~~~~~~~~--~f~~~m~~~~~~~~~~~~~~~~ 104 (239)
. +|.++|+++.++|+..+ .|+.+|...+.... .+++.++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p~~~~~~~f~~~m~~~~~~~~-~~~~~~~ 188 (358)
T 1zg3_A 110 PTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFK-LVLQENK 188 (358)
T ss_dssp TTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGGGHHHHHHHHHHHHHHHHTHH-HHHHHTH
T ss_pred CccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcChhhhhHHHHHHHHhcccHHHH-HHHHhcc
Confidence 1 12356888888999999 99999998877666 8888882
Q ss_pred -CCCCcceEEEeCCCCCC----------------------------------CccccccccCCcceeeechhhhcCChhH
Q 045543 105 -GFEKIKQLVDVGGGCGK----------------------------------CGWKMFQKILNGDAILMKLILRNWDDEH 149 (239)
Q Consensus 105 -~~~~~~~vlDvGGG~G~----------------------------------~~gD~~~~~p~~D~~~l~~vlH~~~d~~ 149 (239)
.|++..+|||||||+|. +.+|+++++|..|+|+++++||+|+|++
T Consensus 189 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~vlh~~~d~~ 268 (358)
T 1zg3_A 189 RVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVLHDWNDEQ 268 (358)
T ss_dssp HHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEEECCTTTCCCCCSEEEEESCGGGSCHHH
T ss_pred hhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEEeCccCCCCCCceEEEEcccccCCCHHH
Confidence 28888999999999998 4678888777679999999999999999
Q ss_pred HHHHHHHHHhhCCC---CceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEE
Q 045543 150 CLSLLKNCYEAIPG---NGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYE 226 (239)
Q Consensus 150 ~~~iL~~~~~aL~p---gg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~ 226 (239)
+.++|++++++|+| ||+|+|+|.+.++....+........+|+.|+... +|++||.+|| .++|+++||++++++
T Consensus 269 ~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~g~~~t~~e~--~~ll~~aGf~~~~~~ 345 (358)
T 1zg3_A 269 SLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMF-LGKERTKQEW--EKLIYDAGFSSYKIT 345 (358)
T ss_dssp HHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHH-SCCCEEHHHH--HHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccC-CCCCCCHHHH--HHHHHHcCCCeeEEE
Confidence 99999999999999 99999999998776543211134567899888865 8999999999 999999999999999
Q ss_pred EcCCceeEEEEEC
Q 045543 227 SFVCNFYIMEFIK 239 (239)
Q Consensus 227 ~~~~~~~vie~~k 239 (239)
+.++..++||++|
T Consensus 346 ~~~~~~~vie~~~ 358 (358)
T 1zg3_A 346 PISGFKSLIEVYP 358 (358)
T ss_dssp EETTTEEEEEEEC
T ss_pred ecCCCcEEEEEeC
Confidence 9888889999987
No 9
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=100.00 E-value=1.1e-37 Score=276.50 Aligned_cols=236 Identities=36% Similarity=0.660 Sum_probs=189.4
Q ss_pred CccchHhHhcC-CCCCCCHHHHHHhCCCC--CCCChhhHHHHHHHhccC---CCC----C----CCeEecChhhHHHH--
Q 045543 1 MGVFEIMAKAG-PRAKLSAAEIEAQMPSH--NPNAAVMLDRVLRRSLSS---AGD----D----RRLQRLAPVAKYVL-- 64 (239)
Q Consensus 1 Lgifd~L~~~g-~~~~~t~~eLA~~~g~~--~~~~~~~l~rlL~~L~~~---~~~----~----~~~y~~t~~s~~l~-- 64 (239)
|||||+|++.| +++++|++|||+++|++ ++.+++.+.|+||+|++. .+. . ++.|++|+.++.|+
T Consensus 47 lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~L~~~ 126 (372)
T 1fp1_D 47 LNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPD 126 (372)
T ss_dssp TTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTGGGGSTT
T ss_pred CChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCceEecccccCCCCcCCeEecCHHHHHHhCC
Confidence 79999999743 11229999999999981 344688999999999998 232 2 36999998764332
Q ss_pred ---------------------------------------hcCCCcccccccCchHHHHHHHHHHhcccccHHHHHhhccC
Q 045543 65 ---------------------------------------HYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKG 105 (239)
Q Consensus 65 ---------------------------------------~~g~~~~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~ 105 (239)
++|.++|+++.++|+..+.|+++|...+....+.+++.++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~ 206 (372)
T 1fp1_D 127 ESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTG 206 (372)
T ss_dssp CTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred CCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCHHHHHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 11345688888999999999999998887777889999876
Q ss_pred CCCcceEEEeCCCCCC----------------------------------CccccccccCCcceeeechhhhcCChhHHH
Q 045543 106 FEKIKQLVDVGGGCGK----------------------------------CGWKMFQKILNGDAILMKLILRNWDDEHCL 151 (239)
Q Consensus 106 ~~~~~~vlDvGGG~G~----------------------------------~~gD~~~~~p~~D~~~l~~vlH~~~d~~~~ 151 (239)
|++..+|||||||+|. +.+|+++++|..|+|+++++||+|+|+++.
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~~lh~~~d~~~~ 286 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCI 286 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHH
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcCCCEEEeCCcccCCCCCCEEEEecccccCCHHHHH
Confidence 8888999999999999 467888877778999999999999999999
Q ss_pred HHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEc-CC
Q 045543 152 SLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESF-VC 230 (239)
Q Consensus 152 ~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~-~~ 230 (239)
++|++++++|+|||+|+|.|.+.++....+...+....+|+.|+... +|++||.+|| .++|+++||+++++++. .+
T Consensus 287 ~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~t~~e~--~~ll~~aGf~~~~~~~~~~~ 363 (372)
T 1fp1_D 287 EFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITV-GGRERTEKQY--EKLSKLSGFSKFQVACRAFN 363 (372)
T ss_dssp HHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHH-SCCCEEHHHH--HHHHHHTTCSEEEEEEEETT
T ss_pred HHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhcc-CCccCCHHHH--HHHHHHCCCceEEEEEcCCC
Confidence 99999999999999999999998776543322224567888888754 8999999999 99999999999999885 34
Q ss_pred ceeEEEEEC
Q 045543 231 NFYIMEFIK 239 (239)
Q Consensus 231 ~~~vie~~k 239 (239)
..+|||++|
T Consensus 364 ~~~vie~~~ 372 (372)
T 1fp1_D 364 SLGVMEFYK 372 (372)
T ss_dssp TEEEEEEEC
T ss_pred CeEEEEEeC
Confidence 269999987
No 10
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=100.00 E-value=1.9e-37 Score=273.05 Aligned_cols=230 Identities=27% Similarity=0.444 Sum_probs=192.0
Q ss_pred CccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---CCC--CCCeEecChhhHHHH-----------
Q 045543 1 MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---AGD--DRRLQRLAPVAKYVL----------- 64 (239)
Q Consensus 1 Lgifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~~~--~~~~y~~t~~s~~l~----------- 64 (239)
||||++|++.+ +|+|++|||+++|+ ++.+++.+.|+||+|++. .+. +++.|++|+.++.|+
T Consensus 39 lgif~~L~~~~--~~~t~~ela~~~~~-~~~~~~~l~rlLr~L~~~gll~~~~~~~~~y~~t~~s~~L~~~~~~~~~~~~ 115 (352)
T 1fp2_A 39 MNIPNIIQNHG--KPISLSNLVSILQV-PSSKIGNVRRLMRYLAHNGFFEIITKEEESYALTVASELLVRGSDLCLAPMV 115 (352)
T ss_dssp TTHHHHHHHHT--SCEEHHHHHHHHTC-CGGGHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHHHTTSTTSSSCCHHHH
T ss_pred CChhhhhhhcC--CCccHHHHHHHhCc-CCCChHHHHHHHHHHHhCCeEEEecCCCCeEeCCHHHHHHhCCCCccHHHHH
Confidence 79999999753 59999999999999 222377899999999998 333 368999999765432
Q ss_pred -----------------------------hcCCCcccccccCchHHHHHHHHHHhcccccHHHHHhhc--cCCCCcceEE
Q 045543 65 -----------------------------HYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYY--KGFEKIKQLV 113 (239)
Q Consensus 65 -----------------------------~~g~~~~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~--~~~~~~~~vl 113 (239)
++|.++|+++.++|+..+.|+.+|...+....+. ++.| + |++..+||
T Consensus 116 ~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~-~~~~~~~-~~~~~~vl 193 (352)
T 1fp2_A 116 ECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLA-LRDCDFV-FDGLESIV 193 (352)
T ss_dssp HHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHH-HHTCHHH-HTTCSEEE
T ss_pred HHhcCchHHHHHHHHHHHHHhcCCChHHHHcCCCHHHHHHhChHHHHHHHHHHHhcchhhhhH-HHhcccc-cccCceEE
Confidence 1234678888899999999999999988776666 7788 5 88889999
Q ss_pred EeCCCCCC----------------------------------CccccccccCCcceeeechhhhcCChhHHHHHHHHHHh
Q 045543 114 DVGGGCGK----------------------------------CGWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCYE 159 (239)
Q Consensus 114 DvGGG~G~----------------------------------~~gD~~~~~p~~D~~~l~~vlH~~~d~~~~~iL~~~~~ 159 (239)
|||||+|. +.+|+++++|..|+|+++++||+|+|+++.++|+++++
T Consensus 194 DvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~~lh~~~d~~~~~~l~~~~~ 273 (352)
T 1fp2_A 194 DVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKE 273 (352)
T ss_dssp EETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred EeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEeccccCCCCCccEEEeehhhccCCHHHHHHHHHHHHH
Confidence 99999999 45788887776799999999999999999999999999
Q ss_pred hCCC---CceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcCCceeEEE
Q 045543 160 AIPG---NGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCNFYIME 236 (239)
Q Consensus 160 aL~p---gg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~~~~~vie 236 (239)
+|+| ||+|+|.|.+.++....+........+|+.|+. + +|++||.+|| .++|+++||+.+++++.++..+|||
T Consensus 274 ~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~-~g~~~t~~e~--~~ll~~aGf~~~~~~~~~~~~~vie 349 (352)
T 1fp2_A 274 AVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-L-NGKERNEEEW--KKLFIEAGFQHYKISPLTGFLSLIE 349 (352)
T ss_dssp HHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-G-TCCCEEHHHH--HHHHHHTTCCEEEEEEEETTEEEEE
T ss_pred hCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHh-c-cCCCCCHHHH--HHHHHHCCCCeeEEEecCCCcEEEE
Confidence 9999 999999999887654321111234578888887 5 6999999999 9999999999999999888889999
Q ss_pred EEC
Q 045543 237 FIK 239 (239)
Q Consensus 237 ~~k 239 (239)
++|
T Consensus 350 ~~~ 352 (352)
T 1fp2_A 350 IYP 352 (352)
T ss_dssp EEC
T ss_pred EeC
Confidence 987
No 11
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=100.00 E-value=8.4e-37 Score=270.23 Aligned_cols=226 Identities=17% Similarity=0.222 Sum_probs=180.1
Q ss_pred CccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CCCCCCeEecChhhHHHH--------------
Q 045543 1 MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AGDDRRLQRLAPVAKYVL-------------- 64 (239)
Q Consensus 1 Lgifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~~~~~~y~~t~~s~~l~-------------- 64 (239)
|||||+|++++ +|+|++|||+++|+ +++.++|+||+|++. .+.++++|++|+.++.|+
T Consensus 38 lgifd~L~~~~--~~~t~~eLA~~~g~----~~~~l~rlLr~l~~~g~l~~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~ 111 (363)
T 3dp7_A 38 FGIFQLLSGKR--EGYTLQEISGRTGL----TRYAAQVLLEASLTIGTILLEEDRYVLAKAGWFLLNDKMARVNMEFNHD 111 (363)
T ss_dssp TTHHHHHHTCT--TCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEETTEEEECHHHHHHHHCHHHHHHHHHHHH
T ss_pred hCHHHHHHhcC--CCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCeEecCCEEecccchHHhhCCCcccchheeecH
Confidence 79999999843 79999999999999 999999999999998 334589999999997765
Q ss_pred ----------------------hcC--CCcccccccCchHHHH----HHHHHHhcccccHHHHHhhccCCCCcceEEEeC
Q 045543 65 ----------------------HYG--IGDYEHAGLDSRFNEV----LNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVG 116 (239)
Q Consensus 65 ----------------------~~g--~~~~~~l~~~~~~~~~----f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG 116 (239)
++| .++|+++.++|+..+. |+.+|...+ ...+++.+. ..+..+|||||
T Consensus 112 ~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~---~~~~l~~~~-~~~~~~vlDvG 187 (363)
T 3dp7_A 112 VNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQS---FGKALEIVF-SHHPKRLLDIG 187 (363)
T ss_dssp TTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGGSCHHHHHHHHHHHHHTTCCC---CHHHHHHHG-GGCCSEEEEES
T ss_pred HhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhhCHHHHHHHHHHHHHHhhhhh---HHHHHHHhc-ccCCCEEEEeC
Confidence 234 4788999999987663 666665433 234555555 46779999999
Q ss_pred CCCCC-----------------------------------------Cccccccc---cCCc-ceeeechhhhcCChhHHH
Q 045543 117 GGCGK-----------------------------------------CGWKMFQK---ILNG-DAILMKLILRNWDDEHCL 151 (239)
Q Consensus 117 GG~G~-----------------------------------------~~gD~~~~---~p~~-D~~~l~~vlH~~~d~~~~ 151 (239)
||+|. +.+|++++ +|.. |+|+++++||+|+|+++.
T Consensus 188 ~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~ 267 (363)
T 3dp7_A 188 GNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVI 267 (363)
T ss_dssp CTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEESCSTTSCHHHHH
T ss_pred CCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEechhhhCCHHHHH
Confidence 99999 56899884 6754 999999999999999999
Q ss_pred HHHHHHHhhCCCCceEEEEeeecCCCCCCCh-hhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcC-
Q 045543 152 SLLKNCYEAIPGNGKIIIIDSTTVVIPEATP-ATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFV- 229 (239)
Q Consensus 152 ~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~-~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~- 229 (239)
++|++++++|+|||+|+|+|.+.++....+. ........++.|+... ++++||.+|| .++|+++||+++++++..
T Consensus 268 ~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~t~~e~--~~ll~~AGf~~v~~~~~~g 344 (363)
T 3dp7_A 268 SILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANG-NSKMFHSDDL--IRCIENAGLEVEEIQDNIG 344 (363)
T ss_dssp HHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCS-SCCSCCHHHH--HHHHHTTTEEESCCCCCBT
T ss_pred HHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCC-CCcccCHHHH--HHHHHHcCCeEEEEEeCCC
Confidence 9999999999999999999998876543210 0011123444455443 6889999999 999999999999998765
Q ss_pred CceeEEEEEC
Q 045543 230 CNFYIMEFIK 239 (239)
Q Consensus 230 ~~~~vie~~k 239 (239)
..+++||++|
T Consensus 345 ~~~svi~~~~ 354 (363)
T 3dp7_A 345 LGHSILQCRL 354 (363)
T ss_dssp TTBEEEEEEE
T ss_pred CCceEEEEee
Confidence 5699999875
No 12
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=100.00 E-value=5.8e-35 Score=256.75 Aligned_cols=221 Identities=11% Similarity=0.143 Sum_probs=182.2
Q ss_pred CccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CCCCCCeEecChhhHHHHh-------------
Q 045543 1 MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AGDDRRLQRLAPVAKYVLH------------- 65 (239)
Q Consensus 1 Lgifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~~~~~~y~~t~~s~~l~~------------- 65 (239)
|||||+|++ |+|++|||+++|+ +++.++|+||+|++. .+..+++|++|+.++.++.
T Consensus 47 lgif~~l~~-----~~t~~elA~~~~~----~~~~l~rlLr~L~~~gll~~~~~~y~~t~~s~~~l~~~~~~~~~~~~~~ 117 (352)
T 3mcz_A 47 DKLFDLTQT-----GRTPAEVAASFGM----VEGKAAILLHALAALGLLTKEGDAFRNTALTERYLTTTSADYIGPIVEH 117 (352)
T ss_dssp TTHHHHTTS-----CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEETTEEEECHHHHHHHSTTCTTCCHHHHHH
T ss_pred CChHHHhCC-----CCCHHHHHHHhCc----ChHHHHHHHHHHHHCCCeEecCCeeecCHHHHhhccCCChhhHHHHHHH
Confidence 799999963 9999999999999 999999999999998 3334588999999986651
Q ss_pred ----------------cCCCc-cc---ccccCchHHHHHHHHHHhcccccHHHHHhhccCCCC-cceEEEeCCCCCC---
Q 045543 66 ----------------YGIGD-YE---HAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEK-IKQLVDVGGGCGK--- 121 (239)
Q Consensus 66 ----------------~g~~~-~~---~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~-~~~vlDvGGG~G~--- 121 (239)
.|.+. |+ ++..+|+..+.|..+|...... ...+++.++ +.+ ..+|||||||+|.
T Consensus 118 ~~~~~~~~~~l~~~l~~g~~~~f~~~~~~~~~~~~~~~f~~~m~~~~~~-~~~~l~~~~-~~~~~~~vlDvG~G~G~~~~ 195 (352)
T 3mcz_A 118 QYLQWDNWPRLGEILRSEKPLAFQQESRFAHDTRARDAFNDAMVRLSQP-MVDVVSELG-VFARARTVIDLAGGHGTYLA 195 (352)
T ss_dssp HHTTTTTGGGHHHHHTCSSCCTTSHHHHTTTCHHHHHHHHHHHHHHHHH-HHHHHHTCG-GGTTCCEEEEETCTTCHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCCCcccccccccCHHHHHHHHHHHHhhhhh-HHHHHHhCC-CcCCCCEEEEeCCCcCHHHH
Confidence 12111 11 2356788889999999873322 347888998 887 8999999999998
Q ss_pred --------------------------------------Cccccccc---cCCc-ceeeechhhhcCChhHHHHHHHHHHh
Q 045543 122 --------------------------------------CGWKMFQK---ILNG-DAILMKLILRNWDDEHCLSLLKNCYE 159 (239)
Q Consensus 122 --------------------------------------~~gD~~~~---~p~~-D~~~l~~vlH~~~d~~~~~iL~~~~~ 159 (239)
+.+|+++. .|.+ |+|+++++||+|+|+++.++|+++++
T Consensus 196 ~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~ 275 (352)
T 3mcz_A 196 QVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAG 275 (352)
T ss_dssp HHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHH
Confidence 56788884 5554 99999999999999999999999999
Q ss_pred hCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcCCceeEEEEEC
Q 045543 160 AIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCNFYIMEFIK 239 (239)
Q Consensus 160 aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~~~~~vie~~k 239 (239)
+|+|||+|+|+|.+.++....+ .....+|+.|+..+.+|++||.+|| +++|+++||++++.. .+..++++++|
T Consensus 276 ~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t~~e~--~~ll~~aGf~~~~~~--~g~~~l~~a~k 348 (352)
T 3mcz_A 276 LVKPGGALLILTMTMNDDRVTP---ALSADFSLHMMVNTNHGELHPTPWI--AGVVRDAGLAVGERS--IGRYTLLIGQR 348 (352)
T ss_dssp TEEEEEEEEEEEECCCTTSSSS---HHHHHHHHHHHHHSTTCCCCCHHHH--HHHHHHTTCEEEEEE--ETTEEEEEEEC
T ss_pred HcCCCCEEEEEEeccCCCCCCC---chHHHhhHHHHhhCCCCCcCCHHHH--HHHHHHCCCceeeec--cCceEEEEEec
Confidence 9999999999999988765443 2356789999876668999999999 999999999999843 35688999886
No 13
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=100.00 E-value=1.7e-35 Score=260.79 Aligned_cols=223 Identities=19% Similarity=0.344 Sum_probs=190.8
Q ss_pred CccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---CCCCCCeEecChhhHHHH-------------
Q 045543 1 MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---AGDDRRLQRLAPVAKYVL------------- 64 (239)
Q Consensus 1 Lgifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~~~~~~~y~~t~~s~~l~------------- 64 (239)
||||+.|++ +|+|++|||+++|+ +++.+.|+||+|++. .+..+++|++|+.++.|.
T Consensus 42 l~i~~~l~~----~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~~~~~~~g~y~~t~~s~~l~~~~~~~~~~~~~~ 113 (360)
T 1tw3_A 42 LRLVDHILA----GARTVKALAARTDT----RPEALLRLIRHLVAIGLLEEDAPGEFVPTEVGELLADDHPAAQRAWHDL 113 (360)
T ss_dssp TTHHHHHHT----TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEETTEEEECTTGGGGSTTSTTCHHHHTCT
T ss_pred hCHHHHHhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEecCCCeEEeCHHHHHHhcCCchhHHHHHHH
Confidence 689999976 79999999999999 999999999999998 344678999998765432
Q ss_pred ---------------------------hcCCCcccccccCchHHHHHHHHHHhcccccHHHHHhhccCCCCcceEEEeCC
Q 045543 65 ---------------------------HYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGG 117 (239)
Q Consensus 65 ---------------------------~~g~~~~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGG 117 (239)
.+|.++|+++..+|+....|..+|...+....+.+++.++ +++..+||||||
T Consensus 114 ~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~p~~~~~f~~~~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~ 192 (360)
T 1tw3_A 114 TQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGG 192 (360)
T ss_dssp TSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC-CTTCSEEEEETC
T ss_pred hcCchhHHHHHHHHHHHHHcCCCHHHHhcCCCHHHHHHhChHHHHHHHHHHHHHHHHhHHHHHHhCC-CccCcEEEEeCC
Confidence 1234567777778888899999999888877888999998 888899999999
Q ss_pred CCCC-----------------------------------------CccccccccCCc-ceeeechhhhcCChhHHHHHHH
Q 045543 118 GCGK-----------------------------------------CGWKMFQKILNG-DAILMKLILRNWDDEHCLSLLK 155 (239)
Q Consensus 118 G~G~-----------------------------------------~~gD~~~~~p~~-D~~~l~~vlH~~~d~~~~~iL~ 155 (239)
|+|. +.+|+++++|.. |+|+++++||+|+++++.++|+
T Consensus 193 G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~ 272 (360)
T 1tw3_A 193 GKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILT 272 (360)
T ss_dssp TTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHH
T ss_pred cCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCccEEEEcccccCCCHHHHHHHHH
Confidence 9998 456787777875 9999999999999999999999
Q ss_pred HHHhhCCCCceEEEEeee-cCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcCCc---
Q 045543 156 NCYEAIPGNGKIIIIDST-TVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCN--- 231 (239)
Q Consensus 156 ~~~~aL~pgg~lli~d~~-~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~~~--- 231 (239)
+++++|+|||+++|.|.+ .++.... .....+|+.|+... +|+.||.++| .++|+++||+++++++.++.
T Consensus 273 ~~~~~L~pgG~l~i~e~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~t~~e~--~~ll~~aGf~~~~~~~~~~~~~~ 345 (360)
T 1tw3_A 273 RCAEALEPGGRILIHERDDLHENSFN----EQFTELDLRMLVFL-GGALRTREKW--DGLAASAGLVVEEVRQLPSPTIP 345 (360)
T ss_dssp HHHHTEEEEEEEEEEECCBCGGGCCS----HHHHHHHHHHHHHH-SCCCCBHHHH--HHHHHHTTEEEEEEEEEECSSSS
T ss_pred HHHHhcCCCcEEEEEEEeccCCCCCc----chhhhccHHHhhhc-CCcCCCHHHH--HHHHHHCCCeEEEEEeCCCCccc
Confidence 999999999999999998 6654332 23457788888765 8999999999 99999999999999888665
Q ss_pred --eeEEEEEC
Q 045543 232 --FYIMEFIK 239 (239)
Q Consensus 232 --~~vie~~k 239 (239)
.++||++|
T Consensus 346 ~~~~~i~~~~ 355 (360)
T 1tw3_A 346 YDLSLLVLAP 355 (360)
T ss_dssp CEEEEEEEEE
T ss_pred CccEEEEEEe
Confidence 89999986
No 14
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=100.00 E-value=2e-35 Score=261.51 Aligned_cols=223 Identities=20% Similarity=0.387 Sum_probs=186.1
Q ss_pred CccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---CCCCCC--eEecChhhHHHH-----------
Q 045543 1 MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---AGDDRR--LQRLAPVAKYVL----------- 64 (239)
Q Consensus 1 Lgifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~~~~~~--~y~~t~~s~~l~----------- 64 (239)
||||++|++ +|+|++|||+++|+ +++.+.|+||+|++. .+..++ .|++|+.++.|.
T Consensus 39 l~i~~~l~~----~~~t~~eLA~~~g~----~~~~l~r~Lr~L~~~Gll~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~ 110 (374)
T 1qzz_A 39 LRLVDHLLA----GADTLAGLADRTDT----HPQALSRLVRHLTVVGVLEGGEKQGRPLRPTRLGMLLADGHPAQQRAWL 110 (374)
T ss_dssp TTHHHHHHT----TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEECCCC-CCCCEECTTGGGGSTTCTTCHHHHH
T ss_pred cChHHHHhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCEEEeCCCCeEEEEChHHHhhcCCCcccHHHHH
Confidence 699999976 79999999999999 999999999999998 343566 899998765442
Q ss_pred -----------------------------hcCCCcccccccCchHHHHHHHHHHhcccccHHHHHhhccCCCCcceEEEe
Q 045543 65 -----------------------------HYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDV 115 (239)
Q Consensus 65 -----------------------------~~g~~~~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDv 115 (239)
.+|.++|+++..+|+..+.|+.+|...+....+.+++.++ +++..+||||
T Consensus 111 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~vlDv 189 (374)
T 1qzz_A 111 DLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WSAVRHVLDV 189 (374)
T ss_dssp CTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-CTTCCEEEEE
T ss_pred HHcCChhhHHHHHHHHHHHHhcCCChhhhhhCCCHHHHHhhChHHHHHHHHHHHHhhHhHHHHHHHhCC-CCCCCEEEEE
Confidence 1234567777778888999999999887777788999998 8889999999
Q ss_pred CCCCCC-----------------------------------------CccccccccCCc-ceeeechhhhcCChhHHHHH
Q 045543 116 GGGCGK-----------------------------------------CGWKMFQKILNG-DAILMKLILRNWDDEHCLSL 153 (239)
Q Consensus 116 GGG~G~-----------------------------------------~~gD~~~~~p~~-D~~~l~~vlH~~~d~~~~~i 153 (239)
|||+|. +.+|+++++|.. |+|++++++|+|+++++.++
T Consensus 190 G~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~ 269 (374)
T 1qzz_A 190 GGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTI 269 (374)
T ss_dssp TCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGSCHHHHHHH
T ss_pred CCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCCCCCEEEEeccccCCCHHHHHHH
Confidence 999998 457787778875 99999999999999999999
Q ss_pred HHHHHhhCCCCceEEEEee--ecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcCCc
Q 045543 154 LKNCYEAIPGNGKIIIIDS--TTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCN 231 (239)
Q Consensus 154 L~~~~~aL~pgg~lli~d~--~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~~~ 231 (239)
|++++++|+|||+|+|.|. +.++...+ .....+|+.|+... +|+.+|.++| .++|+++||++++++..++.
T Consensus 270 l~~~~~~L~pgG~l~i~e~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~--~~ll~~aGf~~~~~~~~~~~ 342 (374)
T 1qzz_A 270 LRGCVRALEPGGRLLVLDRADVEGDGADR----FFSTLLDLRMLTFM-GGRVRTRDEV--VDLAGSAGLALASERTSGST 342 (374)
T ss_dssp HHHHHHHEEEEEEEEEEECCH-------H----HHHHHHHHHHHHHH-SCCCCCHHHH--HHHHHTTTEEEEEEEEECCS
T ss_pred HHHHHHhcCCCcEEEEEechhhcCCCCCc----chhhhcchHHHHhC-CCcCCCHHHH--HHHHHHCCCceEEEEECCCC
Confidence 9999999999999999998 77654321 33467888888765 8999999999 99999999999999988776
Q ss_pred e-----eEEEEEC
Q 045543 232 F-----YIMEFIK 239 (239)
Q Consensus 232 ~-----~vie~~k 239 (239)
. ++||++|
T Consensus 343 ~~~~~~~~i~~~~ 355 (374)
T 1qzz_A 343 TLPFDFSILEFTA 355 (374)
T ss_dssp SCSSCEEEEEEEE
T ss_pred cccCCcEEEEEEE
Confidence 6 9999975
No 15
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=100.00 E-value=2.9e-34 Score=253.26 Aligned_cols=220 Identities=16% Similarity=0.246 Sum_probs=183.6
Q ss_pred CccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CCCCCCeEecChhhHHHH--------------
Q 045543 1 MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AGDDRRLQRLAPVAKYVL-------------- 64 (239)
Q Consensus 1 Lgifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~~~~~~y~~t~~s~~l~-------------- 64 (239)
|||||.|++ +|+|++|||+++|+ +++.+.|+||+|++. .+..+++|++|+.+..++
T Consensus 54 lgif~~L~~----~~~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~~~~y~~t~~~~~~l~~~~~~~~~~~~~~ 125 (359)
T 1x19_A 54 LDLFSHMAE----GPKDLATLAADTGS----VPPRLEMLLETLRQMRVINLEDGKWSLTEFADYMFSPTPKEPNLHQTPV 125 (359)
T ss_dssp HTHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEETTEEEECHHHHHHSSSSCSBTTBCCHHH
T ss_pred cCcHHHHcC----CCCCHHHHHHHhCc----ChHHHHHHHHHHHhCCCeEeeCCeEecCHHHHHHhcCCCCCccccHHHH
Confidence 589999997 69999999999999 999999999999998 333457999998643221
Q ss_pred -------------------hcCCCcccccccCch---HHHHHHHHHHhccc-ccHHHHHhhccCCCCcceEEEeCCCCCC
Q 045543 65 -------------------HYGIGDYEHAGLDSR---FNEVLNTAMLSHNS-IVMNRILDYYKGFEKIKQLVDVGGGCGK 121 (239)
Q Consensus 65 -------------------~~g~~~~~~l~~~~~---~~~~f~~~m~~~~~-~~~~~~~~~~~~~~~~~~vlDvGGG~G~ 121 (239)
..|.+ |+++.++|+ ..+.|..+|...+. ..++.+++.++ +++..+|||||||+|.
T Consensus 126 ~~~~~~~~~~~~~~L~~~l~~g~~-~~~~~~~p~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~ 203 (359)
T 1x19_A 126 AKAMAFLADDFYMGLSQAVRGQKN-FKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGD 203 (359)
T ss_dssp HHHHHHHHHHTGGGHHHHHTTSCC-CCCSSCSSCCSHHHHHHHHHHHHTTCHHHHHHHHHHCC-CTTCCEEEEESCTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC-CcccccCchhhHHHHHHHHHHHHhccchhHHHHHHhcC-CCCCCEEEEECCcccH
Confidence 01233 888888999 99999999999988 77889999998 9999999999999998
Q ss_pred -----------------------------------------Ccccccc-ccCCcceeeechhhhcCChhHHHHHHHHHHh
Q 045543 122 -----------------------------------------CGWKMFQ-KILNGDAILMKLILRNWDDEHCLSLLKNCYE 159 (239)
Q Consensus 122 -----------------------------------------~~gD~~~-~~p~~D~~~l~~vlH~~~d~~~~~iL~~~~~ 159 (239)
+.+|+++ ++|.+|+|+++++||+|+|+++.++|+++++
T Consensus 204 ~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~ 283 (359)
T 1x19_A 204 ISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFD 283 (359)
T ss_dssp HHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCCCEEEEechhccCCHHHHHHHHHHHHH
Confidence 4567776 5555699999999999999999999999999
Q ss_pred hCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccc----cChhhccHHHHHhhCCCceeeEEEcCCceeEE
Q 045543 160 AIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKE----RTKQEYYGMALTAKNGFKGVNYESFVCNFYIM 235 (239)
Q Consensus 160 aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~----rt~~e~~~~~ll~~aGf~~~~~~~~~~~~~vi 235 (239)
+|+|||+|+|+|...++.. .+. ....+ .|+..+.+|++ ||.+|| .++|+++||+++++++.+ ..++|
T Consensus 284 ~L~pgG~l~i~e~~~~~~~-~~~---~~~~~--~~~~~~~~g~~~~~~~t~~e~--~~ll~~aGf~~v~~~~~~-~~~vi 354 (359)
T 1x19_A 284 AMRSGGRLLILDMVIDDPE-NPN---FDYLS--HYILGAGMPFSVLGFKEQARY--KEILESLGYKDVTMVRKY-DHLLV 354 (359)
T ss_dssp TCCTTCEEEEEEECCCCTT-SCC---HHHHH--HHGGGGGSSCCCCCCCCGGGH--HHHHHHHTCEEEEEEEET-TEEEE
T ss_pred hcCCCCEEEEEecccCCCC-Cch---HHHHH--HHHHhcCCCCcccCCCCHHHH--HHHHHHCCCceEEEEecC-CceEE
Confidence 9999999999999887652 221 22223 45544435888 999999 999999999999999887 78999
Q ss_pred EEEC
Q 045543 236 EFIK 239 (239)
Q Consensus 236 e~~k 239 (239)
+++|
T Consensus 355 ~a~k 358 (359)
T 1x19_A 355 QAVK 358 (359)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9987
No 16
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=100.00 E-value=3.1e-34 Score=250.05 Aligned_cols=224 Identities=15% Similarity=0.152 Sum_probs=190.3
Q ss_pred CccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CCCCCCeEecChhhH-HHH-------------
Q 045543 1 MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AGDDRRLQRLAPVAK-YVL------------- 64 (239)
Q Consensus 1 Lgifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~~~~~~y~~t~~s~-~l~------------- 64 (239)
||||++|++ +|+|++|||+++|+ +++.+.|+||+|++. .+.++++|++|+.++ .|.
T Consensus 29 l~i~~~l~~----~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~l~~~~~~y~~t~~~~~~l~~~~~~~~~~~~~~ 100 (335)
T 2r3s_A 29 LNVFTAISQ----GIESSQSLAQKCQT----SERGMRMLCDYLVIIGFMTKQAEGYRLTSDSAMFLDRQSKFYVGDAIEF 100 (335)
T ss_dssp TTHHHHHTT----SEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEETTEEEECHHHHHHTCTTSTTCCGGGHHH
T ss_pred cChHHHHhc----CCCCHHHHHHHhCC----CchHHHHHHHHHHhcCCeEecCCEEecCHHHHHHhccCCcHHHHHHHHH
Confidence 799999997 69999999999999 999999999999998 344679999999983 332
Q ss_pred -----------------hcCC-Cc--ccccccCchHHHHHHHHHHhcccccHHHHHhhccCC--CCcceEEEeCCCCCC-
Q 045543 65 -----------------HYGI-GD--YEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGF--EKIKQLVDVGGGCGK- 121 (239)
Q Consensus 65 -----------------~~g~-~~--~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~--~~~~~vlDvGGG~G~- 121 (239)
..|. .+ |+++.++|+..+.|..+|.......+..+++.++ + .+..+|||||||+|.
T Consensus 101 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vlDvG~G~G~~ 179 (335)
T 2r3s_A 101 LLSPMITNGFNDLTAAVLKGGTAISSEGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVN-ENKIEPLKVLDISASHGLF 179 (335)
T ss_dssp HTCHHHHGGGTTHHHHHHHTSCCSTTTGGGSTTCTHHHHHHHHSGGGGHHHHHHHHHHHT-C--CCCSEEEEETCTTCHH
T ss_pred hcchhhHHHHHhHHHHHhcCCCCCCCcccccCCHHHHHHHHHHHHHHHhhhHHHHHHhcc-cccCCCCEEEEECCCcCHH
Confidence 0122 12 6777788999999999999888777788999998 7 888999999999998
Q ss_pred ----------------------------------------Ccccccc-ccCCc-ceeeechhhhcCChhHHHHHHHHHHh
Q 045543 122 ----------------------------------------CGWKMFQ-KILNG-DAILMKLILRNWDDEHCLSLLKNCYE 159 (239)
Q Consensus 122 ----------------------------------------~~gD~~~-~~p~~-D~~~l~~vlH~~~d~~~~~iL~~~~~ 159 (239)
+.+|+++ ++|.+ |+|++++++|+|+++++.++|+++++
T Consensus 180 ~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~ 259 (335)
T 2r3s_A 180 GIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKT 259 (335)
T ss_dssp HHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcchhccCCHHHHHHHHHHHHH
Confidence 4567776 56665 99999999999999999999999999
Q ss_pred hCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcCCceeEEEEE
Q 045543 160 AIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCNFYIMEFI 238 (239)
Q Consensus 160 aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~~~~~vie~~ 238 (239)
+|+|||+++|+|...++....+ .....+|+.|+..+++++.+|.++| .++++++||+.+++.+.++..++|+++
T Consensus 260 ~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t~~~~--~~ll~~aGf~~~~~~~~~~~~~~i~~~ 333 (335)
T 2r3s_A 260 ALAVEGKVIVFDFIPNSDRITP---PDAAAFSLVMLATTPNGDAYTFAEY--ESMFSNAGFSHSQLHSLPTTQQQVIVA 333 (335)
T ss_dssp HEEEEEEEEEEECCCCTTSSCS---HHHHHHHHHHHHHSSSCCCCCHHHH--HHHHHHTTCSEEEEECCTTSSSEEEEE
T ss_pred hCCCCcEEEEEeecCCCCcCCc---hHHHHHHHHHHeeCCCCCcCCHHHH--HHHHHHCCCCeeeEEECCCCceeEEEe
Confidence 9999999999999887654333 2356788888876658899999999 999999999999999988778888875
No 17
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=99.59 E-value=8.4e-15 Score=123.64 Aligned_cols=130 Identities=15% Similarity=0.119 Sum_probs=90.4
Q ss_pred CCCcceEEEeCCCCCC--------------------------------------------Ccccccc-ccCCcceeeech
Q 045543 106 FEKIKQLVDVGGGCGK--------------------------------------------CGWKMFQ-KILNGDAILMKL 140 (239)
Q Consensus 106 ~~~~~~vlDvGGG~G~--------------------------------------------~~gD~~~-~~p~~D~~~l~~ 140 (239)
.++..+|||||||+|. +.+|+.+ ++++.|++++..
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~ 147 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 147 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence 4667899999999996 3456655 444569999999
Q ss_pred hhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhh-hhhhhHHHhh-ccC------------CccccCh
Q 045543 141 ILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATRE-ASSIDIIMLM-QLS------------GEKERTK 206 (239)
Q Consensus 141 vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~-~~~~dl~ml~-~~~------------~g~~rt~ 206 (239)
+||.+++++...+|++++++|+|||++++.|....+++... ... ....+..... ... --...|.
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~--~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s~ 225 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVG--ELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSV 225 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHH--HHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBCH
T ss_pred eeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHH--HHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCCH
Confidence 99999999888999999999999999999998776543210 000 0011110000 000 0123578
Q ss_pred hhccHHHHHhhCCCceeeEEEcCCceeEEEEEC
Q 045543 207 QEYYGMALTAKNGFKGVNYESFVCNFYIMEFIK 239 (239)
Q Consensus 207 ~e~~~~~ll~~aGf~~~~~~~~~~~~~vie~~k 239 (239)
+++ .++|++|||+.++++--..++..+.|+|
T Consensus 226 ~~~--~~~L~~AGF~~ve~~fq~~nF~~~iA~K 256 (261)
T 4gek_A 226 ETH--KARLHKAGFEHSELWFQCFNFGSLVALK 256 (261)
T ss_dssp HHH--HHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred HHH--HHHHHHcCCCeEEEEEEeccEEEEEEEE
Confidence 899 9999999999998865444555666776
No 18
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=99.56 E-value=3.7e-14 Score=116.60 Aligned_cols=139 Identities=15% Similarity=0.122 Sum_probs=95.7
Q ss_pred HHHHhhccCCCCcceEEEeCCCCCC---------------------------------------Ccccccc-ccCCc-ce
Q 045543 97 NRILDYYKGFEKIKQLVDVGGGCGK---------------------------------------CGWKMFQ-KILNG-DA 135 (239)
Q Consensus 97 ~~~~~~~~~~~~~~~vlDvGGG~G~---------------------------------------~~gD~~~-~~p~~-D~ 135 (239)
..+++.++...+..+|||||||+|. +.+|+.+ +.+.. |+
T Consensus 33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 112 (234)
T 3dtn_A 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDM 112 (234)
T ss_dssp HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEE
T ss_pred HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceE
Confidence 3444444423456899999999998 3456655 33333 99
Q ss_pred eeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhh-hhhhHH--------H----hhccCCcc
Q 045543 136 ILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREA-SSIDII--------M----LMQLSGEK 202 (239)
Q Consensus 136 ~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~-~~~dl~--------m----l~~~~~g~ 202 (239)
|++..++|++++++...+|+++++.|+|||++++.+...++..... .... .+.... . +.......
T Consensus 113 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (234)
T 3dtn_A 113 VVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIE--NLNKTIWRQYVENSGLTEEEIAAGYERSKLDK 190 (234)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHH--HHHHHHHHHHHHTSSCCHHHHHTTC----CCC
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhh--hHHHHHHHHHHHhcCCCHHHHHHHHHhccccc
Confidence 9999999999999888999999999999999999998765532110 0000 000000 0 00001234
Q ss_pred ccChhhccHHHHHhhCCCceeeEEEcCCceeEEEEEC
Q 045543 203 ERTKQEYYGMALTAKNGFKGVNYESFVCNFYIMEFIK 239 (239)
Q Consensus 203 ~rt~~e~~~~~ll~~aGf~~~~~~~~~~~~~vie~~k 239 (239)
.+|.+++ .++|++|||+.+++......++++-.+|
T Consensus 191 ~~~~~~~--~~ll~~aGF~~v~~~~~~~~~~~~~~~~ 225 (234)
T 3dtn_A 191 DIEMNQQ--LNWLKEAGFRDVSCIYKYYQFAVMFGRK 225 (234)
T ss_dssp CCBHHHH--HHHHHHTTCEEEEEEEEETTEEEEEEEC
T ss_pred ccCHHHH--HHHHHHcCCCceeeeeeecceeEEEEEe
Confidence 5688999 9999999999999988777777776654
No 19
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=99.49 E-value=2.6e-13 Score=110.43 Aligned_cols=133 Identities=15% Similarity=0.198 Sum_probs=92.0
Q ss_pred HHHHhhccCCCCcceEEEeCCCCCC-----------------------------------Ccccccc-ccCCc-ceeeec
Q 045543 97 NRILDYYKGFEKIKQLVDVGGGCGK-----------------------------------CGWKMFQ-KILNG-DAILMK 139 (239)
Q Consensus 97 ~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------~~gD~~~-~~p~~-D~~~l~ 139 (239)
..+++.+. ..+..+|||||||+|. +.+|+.+ +.+.. |+|++.
T Consensus 35 ~~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~ 113 (220)
T 3hnr_A 35 EDILEDVV-NKSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVST 113 (220)
T ss_dssp HHHHHHHH-HTCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEEE
T ss_pred HHHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEEC
Confidence 45666666 5677899999999998 3456655 34433 999999
Q ss_pred hhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHh------h-ccCCccccChhhccHH
Q 045543 140 LILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIML------M-QLSGEKERTKQEYYGM 212 (239)
Q Consensus 140 ~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml------~-~~~~g~~rt~~e~~~~ 212 (239)
+++|++++.+...+|+++++.|+|||++++.+...+.... .......... . ........|.+++ .
T Consensus 114 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 185 (220)
T 3hnr_A 114 YAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDA------YDKTVEAAKQRGFHQLANDLQTEYYTRIPVM--Q 185 (220)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHH------HHHHHHHHHHTTCHHHHHHHHHSCCCBHHHH--H
T ss_pred cchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHH------HHHHHHHHHhCCCccchhhcchhhcCCHHHH--H
Confidence 9999999998888999999999999999999876543211 0011100000 0 0000123478999 9
Q ss_pred HHHhhCCCceeeEEEcCCceeEEEEEC
Q 045543 213 ALTAKNGFKGVNYESFVCNFYIMEFIK 239 (239)
Q Consensus 213 ~ll~~aGf~~~~~~~~~~~~~vie~~k 239 (239)
++|+++||+++.+. ......++++.|
T Consensus 186 ~~l~~aGf~v~~~~-~~~~~w~~~~~~ 211 (220)
T 3hnr_A 186 TIFENNGFHVTFTR-LNHFVWVMEATK 211 (220)
T ss_dssp HHHHHTTEEEEEEE-CSSSEEEEEEEE
T ss_pred HHHHHCCCEEEEee-ccceEEEEeehh
Confidence 99999999876554 446677887764
No 20
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.47 E-value=7.8e-15 Score=119.81 Aligned_cols=163 Identities=11% Similarity=0.057 Sum_probs=99.3
Q ss_pred cccccccCchHHHHHHHHHHhcccccHHHHHhhccCCCCcceEEEeCCCCCC----------------------------
Q 045543 70 DYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGK---------------------------- 121 (239)
Q Consensus 70 ~~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGGG~G~---------------------------- 121 (239)
+++|+...|.+...+...+........+.+.+.+ ....+|||||||+|.
T Consensus 3 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~ 79 (227)
T 1ve3_A 3 FKEYYRVFPTYTDINSQEYRSRIETLEPLLMKYM---KKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREY 79 (227)
T ss_dssp CHHHHHHCSTTTCTTSHHHHHHHHHHHHHHHHSC---CSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred chhHHHHhhhhhcccHHHHHHHHHHHHHHHHHhc---CCCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHH
Confidence 3444444444333333333322222233444433 336799999999998
Q ss_pred ----------Ccccccc-ccCC-c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhh
Q 045543 122 ----------CGWKMFQ-KILN-G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREAS 188 (239)
Q Consensus 122 ----------~~gD~~~-~~p~-~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~ 188 (239)
+.+|+.+ +++. . |+|++..++|.+..++...+|+++++.|+|||++++.+...+...... ......
T Consensus 80 ~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~-~~~~~~ 158 (227)
T 1ve3_A 80 AKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRL-KESLVV 158 (227)
T ss_dssp HHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGC-CC----
T ss_pred HHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHH-Hhhhhc
Confidence 3456665 4453 3 999999998888888889999999999999999999876532211000 000000
Q ss_pred hhhHHHhhccCC--------------------ccccChhhccHHHHHhhCCCceeeEEEcCCceeEEEEEC
Q 045543 189 SIDIIMLMQLSG--------------------EKERTKQEYYGMALTAKNGFKGVNYESFVCNFYIMEFIK 239 (239)
Q Consensus 189 ~~dl~ml~~~~~--------------------g~~rt~~e~~~~~ll~~aGf~~~~~~~~~~~~~vie~~k 239 (239)
..+..+....+. ...++ .+| .++|+++||+.+++..+....++|++.|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-~~~--~~~l~~~GF~~v~~~~~~~~~~~i~~~~ 226 (227)
T 1ve3_A 159 GQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWG-KTG--VELLAKLYFTKEAEEKVGNYSYLTVYNP 226 (227)
T ss_dssp -----CCEEEEETTTTEEEEEC-----CCEEEEECCC-HHH--HHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred ccceeecccccCccccEEEEEeccchhhheeehhhhc-hHH--HHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence 000000000000 11112 478 9999999999999999887788999875
No 21
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=99.47 E-value=4.8e-13 Score=108.72 Aligned_cols=122 Identities=14% Similarity=0.128 Sum_probs=94.8
Q ss_pred HHHHHhhccCCCCcceEEEeCCCCCC------------------------------------------Ccccccc-ccCC
Q 045543 96 MNRILDYYKGFEKIKQLVDVGGGCGK------------------------------------------CGWKMFQ-KILN 132 (239)
Q Consensus 96 ~~~~~~~~~~~~~~~~vlDvGGG~G~------------------------------------------~~gD~~~-~~p~ 132 (239)
...+++.++ +.+..+|||||||+|. +.+|+.+ +++.
T Consensus 26 ~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~ 104 (219)
T 3dh0_A 26 PEKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD 104 (219)
T ss_dssp HHHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS
T ss_pred HHHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC
Confidence 456777777 7888899999999998 3345554 4444
Q ss_pred -c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhcc
Q 045543 133 -G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYY 210 (239)
Q Consensus 133 -~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~ 210 (239)
. |+|++..++|++++. ..+|+++++.|+|||++++.+.........+ . ....++.+++
T Consensus 105 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~------~-----------~~~~~~~~~~- 164 (219)
T 3dh0_A 105 NTVDFIFMAFTFHELSEP--LKFLEELKRVAKPFAYLAIIDWKKEERDKGP------P-----------PEEVYSEWEV- 164 (219)
T ss_dssp SCEEEEEEESCGGGCSSH--HHHHHHHHHHEEEEEEEEEEEECSSCCSSSC------C-----------GGGSCCHHHH-
T ss_pred CCeeEEEeehhhhhcCCH--HHHHHHHHHHhCCCeEEEEEEecccccccCC------c-----------hhcccCHHHH-
Confidence 3 999999999999765 5899999999999999999987655442211 0 1123588999
Q ss_pred HHHHHhhCCCceeeEEEcCCceeEEEEEC
Q 045543 211 GMALTAKNGFKGVNYESFVCNFYIMEFIK 239 (239)
Q Consensus 211 ~~~ll~~aGf~~~~~~~~~~~~~vie~~k 239 (239)
.++++++||+++++.........+.++|
T Consensus 165 -~~~l~~~Gf~~~~~~~~~~~~~~~~~~k 192 (219)
T 3dh0_A 165 -GLILEDAGIRVGRVVEVGKYCFGVYAMI 192 (219)
T ss_dssp -HHHHHHTTCEEEEEEEETTTEEEEEEEC
T ss_pred -HHHHHHCCCEEEEEEeeCCceEEEEEEe
Confidence 9999999999999988877777777765
No 22
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=99.43 E-value=1e-13 Score=116.11 Aligned_cols=131 Identities=13% Similarity=0.039 Sum_probs=88.9
Q ss_pred CCcceEEEeCCCCCC----------------------------------Ccccccc-ccCCc-ceeeech-hhhcCCh-h
Q 045543 107 EKIKQLVDVGGGCGK----------------------------------CGWKMFQ-KILNG-DAILMKL-ILRNWDD-E 148 (239)
Q Consensus 107 ~~~~~vlDvGGG~G~----------------------------------~~gD~~~-~~p~~-D~~~l~~-vlH~~~d-~ 148 (239)
++..+|||||||+|. +.+|+.+ +.+.. |+|++.. +||++++ +
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~~~ 128 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAGQA 128 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCHHH
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcCCHH
Confidence 456899999999998 4566665 34444 9999998 9999964 6
Q ss_pred HHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhh--------------------hhhhhhhHHHhhccCC--------
Q 045543 149 HCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPAT--------------------REASSIDIIMLMQLSG-------- 200 (239)
Q Consensus 149 ~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~--------------------~~~~~~dl~ml~~~~~-------- 200 (239)
+...+|+++++.|+|||+++|.+...++.-.+.... .....+++.++....+
T Consensus 129 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (263)
T 3pfg_A 129 ELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHHEE 208 (263)
T ss_dssp HHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEEEEE
Confidence 778999999999999999999755444322110000 0000111122111111
Q ss_pred ---ccccChhhccHHHHHhhCCCceeeEEEcCCceeEEEEEC
Q 045543 201 ---EKERTKQEYYGMALTAKNGFKGVNYESFVCNFYIMEFIK 239 (239)
Q Consensus 201 ---g~~rt~~e~~~~~ll~~aGf~~~~~~~~~~~~~vie~~k 239 (239)
-+.+|.+|| .++|+++||+++++........++.++|
T Consensus 209 ~~~~~~~t~~el--~~ll~~aGF~v~~~~~~~~~~~~~va~K 248 (263)
T 3pfg_A 209 SHRITLFTREQY--ERAFTAAGLSVEFMPGGPSGRGLFTGLP 248 (263)
T ss_dssp EEEEECCCHHHH--HHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEeecHHHH--HHHHHHCCCEEEEeeCCCCCceeEEEec
Confidence 234589999 9999999999998877666677777765
No 23
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=99.43 E-value=4.1e-13 Score=108.71 Aligned_cols=127 Identities=14% Similarity=0.125 Sum_probs=84.3
Q ss_pred HHHHHhhccCCCCcceEEEeCCCCCC-----------------------------------CccccccccCC-c-ceeee
Q 045543 96 MNRILDYYKGFEKIKQLVDVGGGCGK-----------------------------------CGWKMFQKILN-G-DAILM 138 (239)
Q Consensus 96 ~~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------~~gD~~~~~p~-~-D~~~l 138 (239)
...+++.+..+....+|||||||+|. +.+|+.+..+. . |+|++
T Consensus 34 ~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~~ 113 (218)
T 3ou2_A 34 APAALERLRAGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVFF 113 (218)
T ss_dssp HHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEEE
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEEE
Confidence 44566666545666799999999999 34555554343 3 99999
Q ss_pred chhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhh-hhhHHHhhccCCc-------cccChhhcc
Q 045543 139 KLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREAS-SIDIIMLMQLSGE-------KERTKQEYY 210 (239)
Q Consensus 139 ~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~-~~dl~ml~~~~~g-------~~rt~~e~~ 210 (239)
.+++|++++++...+|+++++.|+|||++++.+...+...... .+.. .... +....+.+ +..+.+++
T Consensus 114 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~- 188 (218)
T 3ou2_A 114 AHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQ---QDDSEPEVA-VRRTLQDGRSFRIVKVFRSPAEL- 188 (218)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC---------------CE-EEEECTTSCEEEEECCCCCHHHH-
T ss_pred echhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccch---hhhcccccc-eeeecCCcchhhHhhcCCCHHHH-
Confidence 9999999998889999999999999999999987653221100 0000 0000 00001112 13488999
Q ss_pred HHHHHhhCCCceeeEEEc
Q 045543 211 GMALTAKNGFKGVNYESF 228 (239)
Q Consensus 211 ~~~ll~~aGf~~~~~~~~ 228 (239)
.++|+++||++......
T Consensus 189 -~~~l~~aGf~v~~~~~~ 205 (218)
T 3ou2_A 189 -TERLTALGWSCSVDEVH 205 (218)
T ss_dssp -HHHHHHTTEEEEEEEEE
T ss_pred -HHHHHHCCCEEEeeecc
Confidence 99999999995544433
No 24
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=99.42 E-value=7.2e-13 Score=110.74 Aligned_cols=134 Identities=11% Similarity=0.232 Sum_probs=90.5
Q ss_pred HHHHHHhcccccHHHHHhhccCCCCcceEEEeCCCCCC---------------------------------------Ccc
Q 045543 84 LNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGK---------------------------------------CGW 124 (239)
Q Consensus 84 f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGGG~G~---------------------------------------~~g 124 (239)
|.......+......+++.++ ..+..+|||||||+|. +.+
T Consensus 14 ~~~s~~~~~~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~ 92 (260)
T 1vl5_A 14 YVTSQIHAKGSDLAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQG 92 (260)
T ss_dssp ---------CCCHHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred eecCccccCHHHHHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEe
Confidence 333344444445677888887 7788999999999998 234
Q ss_pred cccc-ccCC-c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhH-HHhhccCC
Q 045543 125 KMFQ-KILN-G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDI-IMLMQLSG 200 (239)
Q Consensus 125 D~~~-~~p~-~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl-~ml~~~~~ 200 (239)
|+.+ ++|. . |+|++..++|+++|. ..+|++++++|+|||+|++.+...++.+ . ...++.. ..+.....
T Consensus 93 d~~~l~~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~ 164 (260)
T 1vl5_A 93 DAEQMPFTDERFHIVTCRIAAHHFPNP--ASFVSEAYRVLKKGGQLLLVDNSAPEND---A---FDVFYNYVEKERDYSH 164 (260)
T ss_dssp CC-CCCSCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEBCSSH---H---HHHHHHHHHHHHCTTC
T ss_pred cHHhCCCCCCCEEEEEEhhhhHhcCCH--HHHHHHHHHHcCCCCEEEEEEcCCCCCH---H---HHHHHHHHHHhcCccc
Confidence 5544 5554 3 999999999999876 4899999999999999999988765431 1 1111211 11111113
Q ss_pred ccccChhhccHHHHHhhCCCceeeEEEc
Q 045543 201 EKERTKQEYYGMALTAKNGFKGVNYESF 228 (239)
Q Consensus 201 g~~rt~~e~~~~~ll~~aGf~~~~~~~~ 228 (239)
...++.++| .++|+++||+++++...
T Consensus 165 ~~~~~~~~~--~~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 165 HRAWKKSDW--LKMLEEAGFELEELHCF 190 (260)
T ss_dssp CCCCBHHHH--HHHHHHHTCEEEEEEEE
T ss_pred cCCCCHHHH--HHHHHHCCCeEEEEEEe
Confidence 456788999 99999999998876543
No 25
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=99.41 E-value=1.7e-12 Score=107.24 Aligned_cols=121 Identities=20% Similarity=0.334 Sum_probs=86.2
Q ss_pred HHHHHhhccCCCCcceEEEeCCCCCC-------------------------------Ccccccc---ccCC-c-ceeeec
Q 045543 96 MNRILDYYKGFEKIKQLVDVGGGCGK-------------------------------CGWKMFQ---KILN-G-DAILMK 139 (239)
Q Consensus 96 ~~~~~~~~~~~~~~~~vlDvGGG~G~-------------------------------~~gD~~~---~~p~-~-D~~~l~ 139 (239)
...+...++.+.+..+|||||||+|. +.+|+.+ +++. . |+|++.
T Consensus 29 ~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~d~~~~~~~~~~~~fD~i~~~ 108 (240)
T 3dli_A 29 KARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGKFNVVKSDAIEYLKSLPDKYLDGVMIS 108 (240)
T ss_dssp HHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTTSEEECSCHHHHHHTSCTTCBSEEEEE
T ss_pred HHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhhcceeeccHHHHhhhcCCCCeeEEEEC
Confidence 33444445535667899999999998 2445544 4454 3 999999
Q ss_pred hhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCC
Q 045543 140 LILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNG 219 (239)
Q Consensus 140 ~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aG 219 (239)
+++|++++++...+|+++++.|+|||++++....... . ....+. ..........+.+++ .++++++|
T Consensus 109 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-----~----~~~~~~--~~~~~~~~~~~~~~l--~~~l~~aG 175 (240)
T 3dli_A 109 HFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTS-----L----YSLINF--YIDPTHKKPVHPETL--KFILEYLG 175 (240)
T ss_dssp SCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTS-----H----HHHHHH--TTSTTCCSCCCHHHH--HHHHHHHT
T ss_pred CchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcch-----h----HHHHHH--hcCccccccCCHHHH--HHHHHHCC
Confidence 9999999988899999999999999999987653211 0 111111 111113355688999 99999999
Q ss_pred CceeeEEEcC
Q 045543 220 FKGVNYESFV 229 (239)
Q Consensus 220 f~~~~~~~~~ 229 (239)
|+++++....
T Consensus 176 f~~~~~~~~~ 185 (240)
T 3dli_A 176 FRDVKIEFFE 185 (240)
T ss_dssp CEEEEEEEEC
T ss_pred CeEEEEEEec
Confidence 9998887653
No 26
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=99.40 E-value=2e-13 Score=110.43 Aligned_cols=149 Identities=12% Similarity=0.141 Sum_probs=94.3
Q ss_pred HHHHHHHHHhccccc----HHHHHhhccCCCCcceEEEeCCCCCC-----------------------------------
Q 045543 81 NEVLNTAMLSHNSIV----MNRILDYYKGFEKIKQLVDVGGGCGK----------------------------------- 121 (239)
Q Consensus 81 ~~~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------- 121 (239)
...|........... ...+++.++ .++. +|||||||+|.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 91 (219)
T 3dlc_A 14 AKNMDEISKTLFAPIYPIIAENIINRFG-ITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANL 91 (219)
T ss_dssp HHHHHHHHHTTTTTHHHHHHHHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHhhccccHHHHHHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccc
Confidence 444555554443332 345555665 5554 99999999998
Q ss_pred ------Ccccccc-ccCC-c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhh-hhhh
Q 045543 122 ------CGWKMFQ-KILN-G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREA-SSID 191 (239)
Q Consensus 122 ------~~gD~~~-~~p~-~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~-~~~d 191 (239)
+.+|+.+ +++. . |+|++.+++|++++. ..+|+++++.|+|||++++.+...+............ ....
T Consensus 92 ~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (219)
T 3dlc_A 92 NDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDV--ATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPD 169 (219)
T ss_dssp TTTEEEEECBTTBCSSCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTT
T ss_pred cCceEEEEcCHHHCCCCcccccEEEECchHhhccCH--HHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHH
Confidence 3456655 5554 3 999999999999665 5899999999999999999875443211000000000 0000
Q ss_pred HHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcCCceeEEE
Q 045543 192 IIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCNFYIME 236 (239)
Q Consensus 192 l~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~~~~~vie 236 (239)
....... ....++.++| .++|+++||+.+++........++.
T Consensus 170 ~~~~~~~-~~~~~~~~~~--~~~l~~aGf~~v~~~~~~~~~~~~~ 211 (219)
T 3dlc_A 170 WKEFNRK-NISQENVERF--QNVLDEIGISSYEIILGDEGFWIII 211 (219)
T ss_dssp HHHHHHH-HSSHHHHHHH--HHHHHHHTCSSEEEEEETTEEEEEE
T ss_pred HHhhhhh-ccccCCHHHH--HHHHHHcCCCeEEEEecCCceEEEE
Confidence 0000000 2344578999 9999999999999987766655543
No 27
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=99.40 E-value=1.2e-12 Score=109.10 Aligned_cols=122 Identities=18% Similarity=0.262 Sum_probs=90.7
Q ss_pred HHHHHhhccCCCCcceEEEeCCCCCC--------------------------------------Ccccccc-ccCC-c-c
Q 045543 96 MNRILDYYKGFEKIKQLVDVGGGCGK--------------------------------------CGWKMFQ-KILN-G-D 134 (239)
Q Consensus 96 ~~~~~~~~~~~~~~~~vlDvGGG~G~--------------------------------------~~gD~~~-~~p~-~-D 134 (239)
...+++.++ ..+..+|||||||+|. +.+|+.+ ++|. . |
T Consensus 44 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 122 (266)
T 3ujc_A 44 TKKILSDIE-LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFD 122 (266)
T ss_dssp HHHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEE
T ss_pred HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEE
Confidence 345666666 7778899999999998 2345554 4543 3 9
Q ss_pred eeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHH
Q 045543 135 AILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMAL 214 (239)
Q Consensus 135 ~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~l 214 (239)
+|++.+++|++++++...+|+++++.|+|||++++.+...+...... ..+.-.. ... +...++.+++ .++
T Consensus 123 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~------~~~~~~~-~~~-~~~~~~~~~~--~~~ 192 (266)
T 3ujc_A 123 LIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWD------DEFKEYV-KQR-KYTLITVEEY--ADI 192 (266)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCC------HHHHHHH-HHH-TCCCCCHHHH--HHH
T ss_pred EEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccch------HHHHHHH-hcC-CCCCCCHHHH--HHH
Confidence 99999999999888889999999999999999999998766521111 1111111 111 3456799999 999
Q ss_pred HhhCCCceeeEEEc
Q 045543 215 TAKNGFKGVNYESF 228 (239)
Q Consensus 215 l~~aGf~~~~~~~~ 228 (239)
++++||+++++...
T Consensus 193 l~~~Gf~~~~~~~~ 206 (266)
T 3ujc_A 193 LTACNFKNVVSKDL 206 (266)
T ss_dssp HHHTTCEEEEEEEC
T ss_pred HHHcCCeEEEEEeC
Confidence 99999999988765
No 28
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=99.39 E-value=1.3e-12 Score=109.69 Aligned_cols=123 Identities=15% Similarity=0.132 Sum_probs=90.6
Q ss_pred HHHHHhhccCCCCcceEEEeCCCCCC-----------------------------------------Ccccccc-ccCC-
Q 045543 96 MNRILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQ-KILN- 132 (239)
Q Consensus 96 ~~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~-~~p~- 132 (239)
...+++.++ ..+..+|||||||+|. +.+|+.+ +++.
T Consensus 50 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 128 (273)
T 3bus_A 50 TDEMIALLD-VRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDA 128 (273)
T ss_dssp HHHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTT
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCC
Confidence 356667777 7788899999999998 2356555 4554
Q ss_pred c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccH
Q 045543 133 G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYG 211 (239)
Q Consensus 133 ~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~ 211 (239)
. |+|++..++|++++. ..+|+++++.|+|||+++|.+.......... ....++..... +..+..++.+++
T Consensus 129 ~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~-- 199 (273)
T 3bus_A 129 SFDAVWALESLHHMPDR--GRALREMARVLRPGGTVAIADFVLLAPVEGA----KKEAVDAFRAG-GGVLSLGGIDEY-- 199 (273)
T ss_dssp CEEEEEEESCTTTSSCH--HHHHHHHHTTEEEEEEEEEEEEEESSCCCHH----HHHHHHHHHHH-HTCCCCCCHHHH--
T ss_pred CccEEEEechhhhCCCH--HHHHHHHHHHcCCCeEEEEEEeeccCCCChh----HHHHHHHHHhh-cCccCCCCHHHH--
Confidence 3 999999999999876 5899999999999999999998765432210 11112211111 225677899999
Q ss_pred HHHHhhCCCceeeEEEc
Q 045543 212 MALTAKNGFKGVNYESF 228 (239)
Q Consensus 212 ~~ll~~aGf~~~~~~~~ 228 (239)
.++++++||+++++...
T Consensus 200 ~~~l~~aGf~~~~~~~~ 216 (273)
T 3bus_A 200 ESDVRQAELVVTSTVDI 216 (273)
T ss_dssp HHHHHHTTCEEEEEEEC
T ss_pred HHHHHHcCCeEEEEEEC
Confidence 99999999999988765
No 29
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=99.38 E-value=1e-12 Score=109.04 Aligned_cols=116 Identities=17% Similarity=0.205 Sum_probs=87.6
Q ss_pred HHHHhhccCCCCcceEEEeCCCCCC--------------------------------------Ccccccc-ccCC-c-ce
Q 045543 97 NRILDYYKGFEKIKQLVDVGGGCGK--------------------------------------CGWKMFQ-KILN-G-DA 135 (239)
Q Consensus 97 ~~~~~~~~~~~~~~~vlDvGGG~G~--------------------------------------~~gD~~~-~~p~-~-D~ 135 (239)
..+++.++ ..+..+|||||||+|. +.+|+.+ +++. . |+
T Consensus 83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 161 (254)
T 1xtp_A 83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDL 161 (254)
T ss_dssp HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEE
T ss_pred HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEE
Confidence 45566665 5677899999999998 2345554 4443 3 99
Q ss_pred eeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHH
Q 045543 136 ILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALT 215 (239)
Q Consensus 136 ~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll 215 (239)
|++.++||++++++...+|+++++.|+|||+++|.+....... ...+. ......++.++| .++|
T Consensus 162 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---------~~~~~-----~~~~~~~~~~~~--~~~l 225 (254)
T 1xtp_A 162 IVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDR---------FLVDK-----EDSSLTRSDIHY--KRLF 225 (254)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CC---------EEEET-----TTTEEEBCHHHH--HHHH
T ss_pred EEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCccc---------ceecc-----cCCcccCCHHHH--HHHH
Confidence 9999999999998899999999999999999999987544321 11111 113445799999 9999
Q ss_pred hhCCCceeeEEEcC
Q 045543 216 AKNGFKGVNYESFV 229 (239)
Q Consensus 216 ~~aGf~~~~~~~~~ 229 (239)
+++||+++++....
T Consensus 226 ~~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 226 NESGVRVVKEAFQE 239 (254)
T ss_dssp HHHTCCEEEEEECT
T ss_pred HHCCCEEEEeeecC
Confidence 99999999887653
No 30
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=99.38 E-value=1.6e-12 Score=110.66 Aligned_cols=120 Identities=15% Similarity=0.139 Sum_probs=88.3
Q ss_pred HHHHHhhc----cCCCCcceEEEeCCCCCC-----------------------------------------Ccccccc-c
Q 045543 96 MNRILDYY----KGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQ-K 129 (239)
Q Consensus 96 ~~~~~~~~----~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~-~ 129 (239)
...+++.+ + +.+..+|||||||+|. +.+|+.+ +
T Consensus 67 ~~~l~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 145 (297)
T 2o57_A 67 DEWLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP 145 (297)
T ss_dssp HHHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS
T ss_pred HHHHHHHhhhccC-CCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC
Confidence 34566666 4 7778899999999998 3456665 5
Q ss_pred cCC-c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChh
Q 045543 130 ILN-G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQ 207 (239)
Q Consensus 130 ~p~-~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~ 207 (239)
++. . |+|++..++|++++ ...+|+++++.|+|||++++.+...+...... .....++.. . -....+.+
T Consensus 146 ~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~---~~~~~~~~~---~--~~~~~~~~ 215 (297)
T 2o57_A 146 CEDNSYDFIWSQDAFLHSPD--KLKVFQECARVLKPRGVMAITDPMKEDGIDKS---SIQPILDRI---K--LHDMGSLG 215 (297)
T ss_dssp SCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGG---GGHHHHHHH---T--CSSCCCHH
T ss_pred CCCCCEeEEEecchhhhcCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCchH---HHHHHHHHh---c--CCCCCCHH
Confidence 554 3 99999999999988 47999999999999999999998766543211 111111111 1 12346889
Q ss_pred hccHHHHHhhCCCceeeEEEc
Q 045543 208 EYYGMALTAKNGFKGVNYESF 228 (239)
Q Consensus 208 e~~~~~ll~~aGf~~~~~~~~ 228 (239)
+| .++|+++||+++++...
T Consensus 216 ~~--~~~l~~aGf~~~~~~~~ 234 (297)
T 2o57_A 216 LY--RSLAKECGLVTLRTFSR 234 (297)
T ss_dssp HH--HHHHHHTTEEEEEEEEC
T ss_pred HH--HHHHHHCCCeEEEEEEC
Confidence 99 99999999999988764
No 31
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=99.38 E-value=5.5e-12 Score=106.82 Aligned_cols=128 Identities=16% Similarity=0.155 Sum_probs=91.2
Q ss_pred HHHHhhccCCCCcceEEEeCCCCCC-----------------------------------------CccccccccCCc-c
Q 045543 97 NRILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQKILNG-D 134 (239)
Q Consensus 97 ~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~~p~~-D 134 (239)
..+++.++ ..+..+|||||||+|. +.+|+. ++|.. |
T Consensus 54 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~fD 131 (287)
T 1kpg_A 54 DLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWE-QFDEPVD 131 (287)
T ss_dssp HHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGG-GCCCCCS
T ss_pred HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChh-hCCCCee
Confidence 45566666 7777899999999998 223442 34543 9
Q ss_pred eeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCC-----CChhhhhhhhhhHHHhhccCCccccChhhc
Q 045543 135 AILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPE-----ATPATREASSIDIIMLMQLSGEKERTKQEY 209 (239)
Q Consensus 135 ~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~-----~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~ 209 (239)
+|++..++|++++++...+|+++++.|+|||++++.+...+.... .+.........+......++++...|.+++
T Consensus 132 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 211 (287)
T 1kpg_A 132 RIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMV 211 (287)
T ss_dssp EEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHH
T ss_pred EEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHH
Confidence 999999999998777889999999999999999999987654211 000000011111111112357778899999
Q ss_pred cHHHHHhhCCCceeeEEEc
Q 045543 210 YGMALTAKNGFKGVNYESF 228 (239)
Q Consensus 210 ~~~~ll~~aGf~~~~~~~~ 228 (239)
.++++++||+++++...
T Consensus 212 --~~~l~~aGf~~~~~~~~ 228 (287)
T 1kpg_A 212 --QECASANGFTVTRVQSL 228 (287)
T ss_dssp --HHHHHTTTCEEEEEEEC
T ss_pred --HHHHHhCCcEEEEEEeC
Confidence 99999999999988765
No 32
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=99.37 E-value=2.4e-12 Score=106.47 Aligned_cols=122 Identities=13% Similarity=0.216 Sum_probs=88.4
Q ss_pred HHHHHhhccCCCCcceEEEeCCCCCC---------------------------------------Ccccccc-ccCC-c-
Q 045543 96 MNRILDYYKGFEKIKQLVDVGGGCGK---------------------------------------CGWKMFQ-KILN-G- 133 (239)
Q Consensus 96 ~~~~~~~~~~~~~~~~vlDvGGG~G~---------------------------------------~~gD~~~-~~p~-~- 133 (239)
...+++..+ ..+..+|||||||+|. +.+|+.+ +++. .
T Consensus 10 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 88 (239)
T 1xxl_A 10 LGLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSF 88 (239)
T ss_dssp HHHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCE
T ss_pred cchHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcE
Confidence 456677777 8888999999999998 2345544 4443 3
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhH-HHhhccCCccccChhhccHH
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDI-IMLMQLSGEKERTKQEYYGM 212 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl-~ml~~~~~g~~rt~~e~~~~ 212 (239)
|+|++.+++|+|+|. ..+|+++++.|+|||++++.+...++.. . ...++.. ..+......+.++.++| .
T Consensus 89 D~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~--~ 158 (239)
T 1xxl_A 89 DIITCRYAAHHFSDV--RKAVREVARVLKQDGRFLLVDHYAPEDP---V---LDEFVNHLNRLRDPSHVRESSLSEW--Q 158 (239)
T ss_dssp EEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECBCSSH---H---HHHHHHHHHHHHCTTCCCCCBHHHH--H
T ss_pred EEEEECCchhhccCH--HHHHHHHHHHcCCCcEEEEEEcCCCCCh---h---HHHHHHHHHHhccccccCCCCHHHH--H
Confidence 999999999999875 5899999999999999999988765431 1 1111111 11111113456789999 9
Q ss_pred HHHhhCCCceeeEEEc
Q 045543 213 ALTAKNGFKGVNYESF 228 (239)
Q Consensus 213 ~ll~~aGf~~~~~~~~ 228 (239)
++|+++||+++++...
T Consensus 159 ~ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 159 AMFSANQLAYQDIQKW 174 (239)
T ss_dssp HHHHHTTEEEEEEEEE
T ss_pred HHHHHCCCcEEEEEee
Confidence 9999999998877653
No 33
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=99.37 E-value=3.3e-12 Score=109.85 Aligned_cols=133 Identities=16% Similarity=0.098 Sum_probs=93.1
Q ss_pred HHHHHHHhcccccHHHHHhhccCCCCcceEEEeCCCCCC-----------------------------------------
Q 045543 83 VLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGK----------------------------------------- 121 (239)
Q Consensus 83 ~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------------- 121 (239)
.|.+ +..........+++.++.+.+..+|||||||+|.
T Consensus 93 ~f~~-~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~ 171 (312)
T 3vc1_A 93 VIAE-LHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRS 171 (312)
T ss_dssp HHHH-HHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEE
T ss_pred HHhh-hhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEE
Confidence 3443 4333333345666666546677899999999998
Q ss_pred Ccccccc-ccCC-c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhcc
Q 045543 122 CGWKMFQ-KILN-G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQL 198 (239)
Q Consensus 122 ~~gD~~~-~~p~-~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~ 198 (239)
+.+|+.+ +++. . |+|++..++|+++ ...+|+++++.|+|||++++.+....+..... . .....++-. . .
T Consensus 172 ~~~d~~~~~~~~~~fD~V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~-~~~~~~~~~--~-~ 243 (312)
T 3vc1_A 172 RVCNMLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQP-S-KWVSQINAH--F-E 243 (312)
T ss_dssp EECCTTSCCCCTTCEEEEEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSC-C-HHHHHHHHH--H-T
T ss_pred EECChhcCCCCCCCEeEEEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccccccch-h-HHHHHHHhh--h-c
Confidence 3456655 4553 3 9999999999994 67999999999999999999998776543221 0 111111111 1 1
Q ss_pred CCccccChhhccHHHHHhhCCCceeeEEEc
Q 045543 199 SGEKERTKQEYYGMALTAKNGFKGVNYESF 228 (239)
Q Consensus 199 ~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~ 228 (239)
...++.++| .++|+++||+++++..+
T Consensus 244 --~~~~s~~~~--~~~l~~aGf~~~~~~~~ 269 (312)
T 3vc1_A 244 --CNIHSRREY--LRAMADNRLVPHTIVDL 269 (312)
T ss_dssp --CCCCBHHHH--HHHHHTTTEEEEEEEEC
T ss_pred --CCCCCHHHH--HHHHHHCCCEEEEEEeC
Confidence 236789999 99999999999988764
No 34
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=99.36 E-value=2e-12 Score=101.00 Aligned_cols=115 Identities=19% Similarity=0.187 Sum_probs=87.5
Q ss_pred HHHhhccCCCCcceEEEeCCCCCC----------------------------------CccccccccCC-c-ceeeechh
Q 045543 98 RILDYYKGFEKIKQLVDVGGGCGK----------------------------------CGWKMFQKILN-G-DAILMKLI 141 (239)
Q Consensus 98 ~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------~~gD~~~~~p~-~-D~~~l~~v 141 (239)
.+++.++ ..+..+|||||||+|. +.+| .+++. . |+|++.++
T Consensus 8 ~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~~~ 84 (170)
T 3i9f_A 8 EYLPNIF-EGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFANS 84 (170)
T ss_dssp TTHHHHH-SSCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEESC
T ss_pred HHHHhcC-cCCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEccc
Confidence 4455566 7778899999999998 2233 23443 3 99999999
Q ss_pred hhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCc
Q 045543 142 LRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFK 221 (239)
Q Consensus 142 lH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~ 221 (239)
+|++++. ..+|+++++.|+|||++++.+.........+. ....++.+++ .++++ ||+
T Consensus 85 l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~-----------------~~~~~~~~~~--~~~l~--Gf~ 141 (170)
T 3i9f_A 85 FHDMDDK--QHVISEVKRILKDDGRVIIIDWRKENTGIGPP-----------------LSIRMDEKDY--MGWFS--NFV 141 (170)
T ss_dssp STTCSCH--HHHHHHHHHHEEEEEEEEEEEECSSCCSSSSC-----------------GGGCCCHHHH--HHHTT--TEE
T ss_pred hhcccCH--HHHHHHHHHhcCCCCEEEEEEcCccccccCch-----------------HhhhcCHHHH--HHHHh--CcE
Confidence 9999765 58999999999999999999876554332210 1123688999 99999 999
Q ss_pred eeeEEEcCCceeEEEEE
Q 045543 222 GVNYESFVCNFYIMEFI 238 (239)
Q Consensus 222 ~~~~~~~~~~~~vie~~ 238 (239)
+++.......+..+.+.
T Consensus 142 ~~~~~~~~~~~~~l~~~ 158 (170)
T 3i9f_A 142 VEKRFNPTPYHFGLVLK 158 (170)
T ss_dssp EEEEECSSTTEEEEEEE
T ss_pred EEEccCCCCceEEEEEe
Confidence 99999887766666665
No 35
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=99.36 E-value=2.1e-12 Score=104.80 Aligned_cols=112 Identities=18% Similarity=0.252 Sum_probs=83.9
Q ss_pred HHHHHhhccCCCCcceEEEeCCCCCC---------------------Ccccccc-ccCC-c-ceeeechhhhcCChhHHH
Q 045543 96 MNRILDYYKGFEKIKQLVDVGGGCGK---------------------CGWKMFQ-KILN-G-DAILMKLILRNWDDEHCL 151 (239)
Q Consensus 96 ~~~~~~~~~~~~~~~~vlDvGGG~G~---------------------~~gD~~~-~~p~-~-D~~~l~~vlH~~~d~~~~ 151 (239)
...+++.+....+..+|||||||+|. +.+|+.+ +++. . |+|++..++| +.+ ..
T Consensus 55 ~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~v~~~D~s~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~-~~~--~~ 131 (215)
T 2zfu_A 55 VDRIARDLRQRPASLVVADFGCGDCRLASSIRNPVHCFDLASLDPRVTVCDMAQVPLEDESVDVAVFCLSLM-GTN--IR 131 (215)
T ss_dssp HHHHHHHHHTSCTTSCEEEETCTTCHHHHHCCSCEEEEESSCSSTTEEESCTTSCSCCTTCEEEEEEESCCC-SSC--HH
T ss_pred HHHHHHHHhccCCCCeEEEECCcCCHHHHHhhccEEEEeCCCCCceEEEeccccCCCCCCCEeEEEEehhcc-ccC--HH
Confidence 34455555434566899999999997 2455554 4444 3 9999999998 443 46
Q ss_pred HHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcCCc
Q 045543 152 SLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCN 231 (239)
Q Consensus 152 ~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~~~ 231 (239)
.+|+++++.|+|||++++.+.... ..+.+++ .++++++||++++.......
T Consensus 132 ~~l~~~~~~L~~gG~l~i~~~~~~---------------------------~~~~~~~--~~~l~~~Gf~~~~~~~~~~~ 182 (215)
T 2zfu_A 132 DFLEEANRVLKPGGLLKVAEVSSR---------------------------FEDVRTF--LRAVTKLGFKIVSKDLTNSH 182 (215)
T ss_dssp HHHHHHHHHEEEEEEEEEEECGGG---------------------------CSCHHHH--HHHHHHTTEEEEEEECCSTT
T ss_pred HHHHHHHHhCCCCeEEEEEEcCCC---------------------------CCCHHHH--HHHHHHCCCEEEEEecCCCe
Confidence 999999999999999999874210 1277889 99999999999887666666
Q ss_pred eeEEEEEC
Q 045543 232 FYIMEFIK 239 (239)
Q Consensus 232 ~~vie~~k 239 (239)
..++.++|
T Consensus 183 ~~~~~~~k 190 (215)
T 2zfu_A 183 FFLFDFQK 190 (215)
T ss_dssp CEEEEEEE
T ss_pred EEEEEEEe
Confidence 77777765
No 36
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=99.34 E-value=2.6e-12 Score=109.73 Aligned_cols=153 Identities=8% Similarity=0.104 Sum_probs=90.2
Q ss_pred HHHHHHHhc-ccccHHHHHhhccCCCCcceEEEeCCCCCC----------------------------------------
Q 045543 83 VLNTAMLSH-NSIVMNRILDYYKGFEKIKQLVDVGGGCGK---------------------------------------- 121 (239)
Q Consensus 83 ~f~~~m~~~-~~~~~~~~~~~~~~~~~~~~vlDvGGG~G~---------------------------------------- 121 (239)
.|...+... .......+++.++ .. ..+|||||||+|.
T Consensus 58 ~y~~~~~~~~~~~~~~~~~~~~~-~~-~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v 135 (299)
T 3g2m_A 58 TYRDLIQDADGTSEAREFATRTG-PV-SGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRC 135 (299)
T ss_dssp --------CCCHHHHHHHHHHHC-CC-CSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTE
T ss_pred HHHHHhcccCccHHHHHHHHhhC-CC-CCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccce
Confidence 344444432 2233456666665 33 3499999999999
Q ss_pred --Ccccccc-ccCCc-ceeee-chhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChh--hhhh----h--
Q 045543 122 --CGWKMFQ-KILNG-DAILM-KLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPA--TREA----S-- 188 (239)
Q Consensus 122 --~~gD~~~-~~p~~-D~~~l-~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~--~~~~----~-- 188 (239)
+.+|+.+ +.+.. |+|++ ..++|.+++++...+|+++++.|+|||+|++.....+.....+.. ..+. .
T Consensus 136 ~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 215 (299)
T 3g2m_A 136 TLVQGDMSAFALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRY 215 (299)
T ss_dssp EEEECBTTBCCCSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC------------
T ss_pred EEEeCchhcCCcCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEE
Confidence 2345554 33444 98885 477888888888999999999999999999976543321000000 0000 0
Q ss_pred -----------hhhHHHhh----------ccCCccccChhhccHHHHHhhCCCceeeEEEcC------CceeEEEEEC
Q 045543 189 -----------SIDIIMLM----------QLSGEKERTKQEYYGMALTAKNGFKGVNYESFV------CNFYIMEFIK 239 (239)
Q Consensus 189 -----------~~dl~ml~----------~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~------~~~~vie~~k 239 (239)
...+.+.. ....-+.+|.+++ .++|+++||+++++.+.. ....++|+.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el--~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~~ 291 (299)
T 3g2m_A 216 VLHVRHLPAEEIQEITIHPADETTDPFVVCTHRRRLLAPDQV--VRELVRSGFDVIAQTPFASGGAGRKDMVLVEAVM 291 (299)
T ss_dssp -CCEEEEEEEEEEEEEEEESCC--CCCCEEEEEEEEECHHHH--HHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEEC
T ss_pred EEEEEEeccccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHH--HHHHHHCCCEEEEEEecCCCCCCccceeeeehhh
Confidence 00000000 0001124599999 999999999999998875 2356888763
No 37
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=99.34 E-value=5.8e-13 Score=109.44 Aligned_cols=131 Identities=13% Similarity=0.065 Sum_probs=87.4
Q ss_pred CCcceEEEeCCCCCC----------------------------------Ccccccc-ccCCc-ceeee-chhhhcCC-hh
Q 045543 107 EKIKQLVDVGGGCGK----------------------------------CGWKMFQ-KILNG-DAILM-KLILRNWD-DE 148 (239)
Q Consensus 107 ~~~~~vlDvGGG~G~----------------------------------~~gD~~~-~~p~~-D~~~l-~~vlH~~~-d~ 148 (239)
.+..+|||||||+|. +.+|+.+ +.+.. |+|++ ..++|+++ .+
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~~~ 118 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKTTE 118 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCSHH
T ss_pred CCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCCHH
Confidence 456899999999998 3456655 33334 99994 55999885 47
Q ss_pred HHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhh--------------------hhhhhhHHHhhccCCc-------
Q 045543 149 HCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATR--------------------EASSIDIIMLMQLSGE------- 201 (239)
Q Consensus 149 ~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~--------------------~~~~~dl~ml~~~~~g------- 201 (239)
+...+|+++++.|+|||++++.+...++...+..... ....+++.++....++
T Consensus 119 ~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (239)
T 3bxo_A 119 ELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHFSD 198 (239)
T ss_dssp HHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcceEEEE
Confidence 7889999999999999999998765544321100000 0000111111111121
Q ss_pred ----cccChhhccHHHHHhhCCCceeeEEEcCCceeEEEEEC
Q 045543 202 ----KERTKQEYYGMALTAKNGFKGVNYESFVCNFYIMEFIK 239 (239)
Q Consensus 202 ----~~rt~~e~~~~~ll~~aGf~~~~~~~~~~~~~vie~~k 239 (239)
+.+|.++| .++|+++||+++.+....+...++.++|
T Consensus 199 ~~~~~~~t~~~~--~~ll~~aGF~v~~~~~~~~~~~~~va~K 238 (239)
T 3bxo_A 199 VHLITLFHQAEY--EAAFTAAGLRVEYLEGGPSGRGLFVGVP 238 (239)
T ss_dssp EEEEECCCHHHH--HHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEeeecCHHHH--HHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence 34689999 9999999998777665556788888876
No 38
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=99.32 E-value=5.4e-12 Score=108.18 Aligned_cols=132 Identities=13% Similarity=0.059 Sum_probs=87.6
Q ss_pred CCCcceEEEeCCCCCC-------------------------------------------Ccccccc-ccCCc-ceeeech
Q 045543 106 FEKIKQLVDVGGGCGK-------------------------------------------CGWKMFQ-KILNG-DAILMKL 140 (239)
Q Consensus 106 ~~~~~~vlDvGGG~G~-------------------------------------------~~gD~~~-~~p~~-D~~~l~~ 140 (239)
+.+..+|||||||+|. +.+|+.+ +++.. |+|++..
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 5677899999999998 3456655 34444 9999999
Q ss_pred hhhcCCh-hHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCC--hhh-hh-h---hhhhHHHhhccCCc--cccChhhcc
Q 045543 141 ILRNWDD-EHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEAT--PAT-RE-A---SSIDIIMLMQLSGE--KERTKQEYY 210 (239)
Q Consensus 141 vlH~~~d-~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~--~~~-~~-~---~~~dl~ml~~~~~g--~~rt~~e~~ 210 (239)
++|++++ +.+..+|+++++.|+|||++++.+...++..... +.. .. . ......+......+ ..++.+++
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 274 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQT- 274 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHH-
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHH-
Confidence 9999964 4456799999999999999999886654432211 000 00 0 00000011111011 33789999
Q ss_pred HHHHHhhCCCceeeEEEcC-CceeEEEEEC
Q 045543 211 GMALTAKNGFKGVNYESFV-CNFYIMEFIK 239 (239)
Q Consensus 211 ~~~ll~~aGf~~~~~~~~~-~~~~vie~~k 239 (239)
.++|+++||+++++.... .....+.++|
T Consensus 275 -~~~l~~aGF~~v~~~~~~~~~~~~v~a~K 303 (305)
T 3ocj_A 275 -RAQLEEAGFTDLRFEDDRARLFPTVIARK 303 (305)
T ss_dssp -HHHHHHTTCEEEEEECCTTSSSCEEEEEC
T ss_pred -HHHHHHCCCEEEEEEcccCceeeEEEEec
Confidence 999999999999988654 3445566665
No 39
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.31 E-value=1.9e-12 Score=104.01 Aligned_cols=113 Identities=12% Similarity=0.027 Sum_probs=85.9
Q ss_pred cceEEEeCCCCCC----------------------------------Ccccccc-ccCC-c-ceeeechhhhcCChhHHH
Q 045543 109 IKQLVDVGGGCGK----------------------------------CGWKMFQ-KILN-G-DAILMKLILRNWDDEHCL 151 (239)
Q Consensus 109 ~~~vlDvGGG~G~----------------------------------~~gD~~~-~~p~-~-D~~~l~~vlH~~~d~~~~ 151 (239)
..+|||||||+|. +.+|+.+ +++. . |+|++.+++|++++++..
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~ 121 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELP 121 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTTHH
T ss_pred CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHHHH
Confidence 6899999999998 4567665 4553 3 999999999999988889
Q ss_pred HHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcC-C
Q 045543 152 SLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFV-C 230 (239)
Q Consensus 152 ~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~-~ 230 (239)
.+|+++++.|+|||++++.+...+... .+... ......++.+++ .++|+++||+++++...+ .
T Consensus 122 ~~l~~~~~~L~pgG~l~i~~~~~~~~~------~~~~~--------~~~~~~~~~~~~--~~~l~~~Gf~~~~~~~~~~~ 185 (203)
T 3h2b_A 122 DALVALRMAVEDGGGLLMSFFSGPSLE------PMYHP--------VATAYRWPLPEL--AQALETAGFQVTSSHWDPRF 185 (203)
T ss_dssp HHHHHHHHTEEEEEEEEEEEECCSSCE------EECCS--------SSCEEECCHHHH--HHHHHHTTEEEEEEEECTTS
T ss_pred HHHHHHHHHcCCCcEEEEEEccCCchh------hhhch--------hhhhccCCHHHH--HHHHHHCCCcEEEEEecCCC
Confidence 999999999999999999876443311 00000 013345789999 999999999999988765 4
Q ss_pred ceeEEEE
Q 045543 231 NFYIMEF 237 (239)
Q Consensus 231 ~~~vie~ 237 (239)
++..+..
T Consensus 186 p~~~l~~ 192 (203)
T 3h2b_A 186 PHAYLTA 192 (203)
T ss_dssp SEEEEEE
T ss_pred cchhhhh
Confidence 5555543
No 40
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=99.31 E-value=1.2e-11 Score=105.66 Aligned_cols=129 Identities=19% Similarity=0.221 Sum_probs=91.5
Q ss_pred HHHHhhccCCCCcceEEEeCCCCCC-----------------------------------------CccccccccCCc-c
Q 045543 97 NRILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQKILNG-D 134 (239)
Q Consensus 97 ~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~~p~~-D 134 (239)
..+++.++ ..+..+|||||||+|. +.+|+.+ ++.. |
T Consensus 62 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~fD 139 (302)
T 3hem_A 62 KLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE-FDEPVD 139 (302)
T ss_dssp HHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGG-CCCCCS
T ss_pred HHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHH-cCCCcc
Confidence 45666666 7788899999999998 2234432 3434 9
Q ss_pred eeeechhhhcCCh-------hHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChh-----hhhhhhhhHHHhhccCCcc
Q 045543 135 AILMKLILRNWDD-------EHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPA-----TREASSIDIIMLMQLSGEK 202 (239)
Q Consensus 135 ~~~l~~vlH~~~d-------~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~-----~~~~~~~dl~ml~~~~~g~ 202 (239)
+|++..++|+++| ++...+|+++++.|+|||+++|.+...++....... .....+.+...-..++++.
T Consensus 140 ~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 219 (302)
T 3hem_A 140 RIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGR 219 (302)
T ss_dssp EEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCC
T ss_pred EEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCCC
Confidence 9999999999954 677899999999999999999998876543110000 0000011222222345788
Q ss_pred ccChhhccHHHHHhhCCCceeeEEEcC
Q 045543 203 ERTKQEYYGMALTAKNGFKGVNYESFV 229 (239)
Q Consensus 203 ~rt~~e~~~~~ll~~aGf~~~~~~~~~ 229 (239)
..+.+++ .++++++||+++++....
T Consensus 220 ~~s~~~~--~~~l~~aGf~~~~~~~~~ 244 (302)
T 3hem_A 220 LPRISQV--DYYSSNAGWKVERYHRIG 244 (302)
T ss_dssp CCCHHHH--HHHHHHHTCEEEEEEECG
T ss_pred CCCHHHH--HHHHHhCCcEEEEEEeCc
Confidence 8999999 999999999999887654
No 41
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=99.31 E-value=6.2e-12 Score=103.46 Aligned_cols=99 Identities=17% Similarity=0.148 Sum_probs=78.7
Q ss_pred ceEEEeCCCCCC----------------------------------------CccccccccCC-c-ceeeechhhhcCCh
Q 045543 110 KQLVDVGGGCGK----------------------------------------CGWKMFQKILN-G-DAILMKLILRNWDD 147 (239)
Q Consensus 110 ~~vlDvGGG~G~----------------------------------------~~gD~~~~~p~-~-D~~~l~~vlH~~~d 147 (239)
.+|||||||+|. +.+|+.+..+. . |+|++..++|++++
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 147 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCAIEP 147 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTTSCG
T ss_pred CCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhcCCH
Confidence 599999999998 34566653333 3 99999999999998
Q ss_pred hHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEE
Q 045543 148 EHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYES 227 (239)
Q Consensus 148 ~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~ 227 (239)
++...+|+++++.|+|||++++.++........+ -..++.++| .++|+++||+++++..
T Consensus 148 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-------------------~~~~~~~~~--~~~l~~~Gf~~~~~~~ 206 (235)
T 3lcc_A 148 EMRPAWAKSMYELLKPDGELITLMYPITDHVGGP-------------------PYKVDVSTF--EEVLVPIGFKAVSVEE 206 (235)
T ss_dssp GGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCS-------------------SCCCCHHHH--HHHHGGGTEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCcEEEEEEecccccCCCC-------------------CccCCHHHH--HHHHHHcCCeEEEEEe
Confidence 8889999999999999999999887554332211 011578999 9999999999998876
Q ss_pred cC
Q 045543 228 FV 229 (239)
Q Consensus 228 ~~ 229 (239)
.+
T Consensus 207 ~~ 208 (235)
T 3lcc_A 207 NP 208 (235)
T ss_dssp CT
T ss_pred cC
Confidence 53
No 42
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=99.30 E-value=1.6e-11 Score=105.64 Aligned_cols=128 Identities=19% Similarity=0.255 Sum_probs=90.6
Q ss_pred HHHHhhccCCCCcceEEEeCCCCCC-----------------------------------------CccccccccCCc-c
Q 045543 97 NRILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQKILNG-D 134 (239)
Q Consensus 97 ~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~~p~~-D 134 (239)
..+++.++ ..+..+|||||||+|. +.+|+. .+|.. |
T Consensus 80 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~fD 157 (318)
T 2fk8_A 80 DLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWE-DFAEPVD 157 (318)
T ss_dssp HHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGG-GCCCCCS
T ss_pred HHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChH-HCCCCcC
Confidence 45666666 7777899999999997 123332 34444 9
Q ss_pred eeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCC---C-hhh-hhhhhhhHHHhhccCCccccChhhc
Q 045543 135 AILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEA---T-PAT-REASSIDIIMLMQLSGEKERTKQEY 209 (239)
Q Consensus 135 ~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~---~-~~~-~~~~~~dl~ml~~~~~g~~rt~~e~ 209 (239)
+|++..++|++++++...+|+++++.|+|||++++.+...+..... . +.. ......+...-..++++..++.+++
T Consensus 158 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 237 (318)
T 2fk8_A 158 RIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMM 237 (318)
T ss_dssp EEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHH
T ss_pred EEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHHH
Confidence 9999999999988888999999999999999999998876542110 0 000 0001112211112346778899999
Q ss_pred cHHHHHhhCCCceeeEEEc
Q 045543 210 YGMALTAKNGFKGVNYESF 228 (239)
Q Consensus 210 ~~~~ll~~aGf~~~~~~~~ 228 (239)
.++++++||+++++...
T Consensus 238 --~~~l~~aGf~~~~~~~~ 254 (318)
T 2fk8_A 238 --VEHGEKAGFTVPEPLSL 254 (318)
T ss_dssp --HHHHHHTTCBCCCCEEC
T ss_pred --HHHHHhCCCEEEEEEec
Confidence 99999999999887654
No 43
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=99.29 E-value=7e-12 Score=104.19 Aligned_cols=120 Identities=11% Similarity=-0.008 Sum_probs=85.5
Q ss_pred HHHHHhhccCCCCcceEEEeCCCCCC-----------------------------------------Ccccccc-ccCCc
Q 045543 96 MNRILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQ-KILNG 133 (239)
Q Consensus 96 ~~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~-~~p~~ 133 (239)
...+++.++ ..+..+|||||||+|. +.+|+.+ +.+..
T Consensus 25 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 103 (256)
T 1nkv_A 25 YATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEK 103 (256)
T ss_dssp HHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSC
T ss_pred HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCCC
Confidence 445666666 7778899999999998 2344544 22233
Q ss_pred -ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHH
Q 045543 134 -DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGM 212 (239)
Q Consensus 134 -D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~ 212 (239)
|+|++..++|++++. .++|++++++|+|||++++.+......+... ..... +........++.++| .
T Consensus 104 fD~V~~~~~~~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~~~--~ 171 (256)
T 1nkv_A 104 CDVAACVGATWIAGGF--AGAEELLAQSLKPGGIMLIGEPYWRQLPATE---EIAQA-----CGVSSTSDFLTLPGL--V 171 (256)
T ss_dssp EEEEEEESCGGGTSSS--HHHHHHHTTSEEEEEEEEEEEEEETTCCSSH---HHHHT-----TTCSCGGGSCCHHHH--H
T ss_pred CCEEEECCChHhcCCH--HHHHHHHHHHcCCCeEEEEecCcccCCCChH---HHHHH-----HhcccccccCCHHHH--H
Confidence 999999999999865 5899999999999999999998765543221 01000 000112255688999 9
Q ss_pred HHHhhCCCceeeEEEc
Q 045543 213 ALTAKNGFKGVNYESF 228 (239)
Q Consensus 213 ~ll~~aGf~~~~~~~~ 228 (239)
++|+++||+.+++...
T Consensus 172 ~~l~~aGf~~~~~~~~ 187 (256)
T 1nkv_A 172 GAFDDLGYDVVEMVLA 187 (256)
T ss_dssp HHHHTTTBCCCEEEEC
T ss_pred HHHHHCCCeeEEEEeC
Confidence 9999999999887543
No 44
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=99.29 E-value=5e-12 Score=104.49 Aligned_cols=105 Identities=18% Similarity=0.262 Sum_probs=81.4
Q ss_pred CcceEEEeCCCCCC----------------------------------------Ccccccc-ccCC-c-ceeeechhhhc
Q 045543 108 KIKQLVDVGGGCGK----------------------------------------CGWKMFQ-KILN-G-DAILMKLILRN 144 (239)
Q Consensus 108 ~~~~vlDvGGG~G~----------------------------------------~~gD~~~-~~p~-~-D~~~l~~vlH~ 144 (239)
+..+|||||||+|. +.+|+.+ +.+. . |+|++.+++|+
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 158 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH 158 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhh
Confidence 46899999999998 2234433 3333 3 99999999999
Q ss_pred CChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceee
Q 045543 145 WDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVN 224 (239)
Q Consensus 145 ~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~ 224 (239)
+++++...+|+++++.|+|||++++.+...+. .. .++. ......++.++| .++|+++||++++
T Consensus 159 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~---~~-------~~~~-----~~~~~~~~~~~~--~~~l~~aGf~~~~ 221 (241)
T 2ex4_A 159 LTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE---GV-------ILDD-----VDSSVCRDLDVV--RRIICSAGLSLLA 221 (241)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSS---SE-------EEET-----TTTEEEEBHHHH--HHHHHHTTCCEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEEccCCC---cc-------eecc-----cCCcccCCHHHH--HHHHHHcCCeEEE
Confidence 99988899999999999999999999987654 10 1110 113445699999 9999999999999
Q ss_pred EEEcC
Q 045543 225 YESFV 229 (239)
Q Consensus 225 ~~~~~ 229 (239)
+....
T Consensus 222 ~~~~~ 226 (241)
T 2ex4_A 222 EERQE 226 (241)
T ss_dssp EEECC
T ss_pred eeecC
Confidence 87653
No 45
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=99.29 E-value=1.6e-11 Score=104.17 Aligned_cols=81 Identities=12% Similarity=0.031 Sum_probs=61.0
Q ss_pred cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHH
Q 045543 133 GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGM 212 (239)
Q Consensus 133 ~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~ 212 (239)
.|+|++..+||+++|++...+|++++++|+|||+|+|.+...+. +. ......+....... ....||.+|+ .
T Consensus 158 ~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~---~~---~~~~~~~~~~~~~~-~~~~~s~~ei--~ 228 (274)
T 2qe6_A 158 PAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG---LP---AQQKLARITRENLG-EGWARTPEEI--E 228 (274)
T ss_dssp CCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS---CH---HHHHHHHHHHHHHS-CCCCBCHHHH--H
T ss_pred CEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc---hH---HHHHHHHHHHhcCC-CCccCCHHHH--H
Confidence 39999999999999988899999999999999999999876532 11 11122333222222 4677999999 9
Q ss_pred HHHhhCCCceee
Q 045543 213 ALTAKNGFKGVN 224 (239)
Q Consensus 213 ~ll~~aGf~~~~ 224 (239)
++| +||++++
T Consensus 229 ~~l--~G~~l~~ 238 (274)
T 2qe6_A 229 RQF--GDFELVE 238 (274)
T ss_dssp HTT--TTCEECT
T ss_pred HHh--CCCeEcc
Confidence 999 5998775
No 46
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=99.27 E-value=1.4e-11 Score=99.67 Aligned_cols=113 Identities=15% Similarity=0.152 Sum_probs=81.6
Q ss_pred HHhhccCCCCcceEEEeCCCCCC---------------------------------Ccccccc-ccCCc-ceeeechhhh
Q 045543 99 ILDYYKGFEKIKQLVDVGGGCGK---------------------------------CGWKMFQ-KILNG-DAILMKLILR 143 (239)
Q Consensus 99 ~~~~~~~~~~~~~vlDvGGG~G~---------------------------------~~gD~~~-~~p~~-D~~~l~~vlH 143 (239)
+...+..+.+..+|||||||+|. +.+|+.+ +.+.. |+|++.++||
T Consensus 34 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~ 113 (211)
T 3e23_A 34 LTKFLGELPAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLL 113 (211)
T ss_dssp HHHHHTTSCTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGG
T ss_pred HHHHHHhcCCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchh
Confidence 33333335567899999999998 3456554 31223 9999999999
Q ss_pred cCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCC-Cce
Q 045543 144 NWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNG-FKG 222 (239)
Q Consensus 144 ~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aG-f~~ 222 (239)
++++++...+|+++++.|+|||++++.......... .... ..-..++.+++ .++++++| |++
T Consensus 114 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~--------~~~~-------~~~~~~~~~~~--~~~l~~aG~f~~ 176 (211)
T 3e23_A 114 HVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGR--------DKLA-------RYYNYPSEEWL--RARYAEAGTWAS 176 (211)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEE--------CTTS-------CEECCCCHHHH--HHHHHHHCCCSE
T ss_pred hcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccc--------cccc-------hhccCCCHHHH--HHHHHhCCCcEE
Confidence 999888999999999999999999997543221110 0000 01134689999 99999999 999
Q ss_pred eeEEEc
Q 045543 223 VNYESF 228 (239)
Q Consensus 223 ~~~~~~ 228 (239)
+++...
T Consensus 177 ~~~~~~ 182 (211)
T 3e23_A 177 VAVESS 182 (211)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 988654
No 47
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=99.27 E-value=9.6e-12 Score=104.66 Aligned_cols=116 Identities=17% Similarity=0.273 Sum_probs=81.6
Q ss_pred CCCcceEEEeCCCCCC-----------------------------------------Ccccccc-ccCC-c-ceeeechh
Q 045543 106 FEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQ-KILN-G-DAILMKLI 141 (239)
Q Consensus 106 ~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~-~~p~-~-D~~~l~~v 141 (239)
+.+..+|||||||+|. +.+|+.+ +++. . |+|++.++
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 6778899999999998 2345554 4443 3 99999999
Q ss_pred hhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCC---CCCChh-hhhhhhhhHHHhhccCCccccChhhccHHHHHhh
Q 045543 142 LRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVI---PEATPA-TREASSIDIIMLMQLSGEKERTKQEYYGMALTAK 217 (239)
Q Consensus 142 lH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~---~~~~~~-~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~ 217 (239)
+|+++|.. .+|+++++.|+|||++++.+...... +..+.. ........ +... .++..++..++ .++|++
T Consensus 115 l~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~l--~~~l~~ 187 (276)
T 3mgg_A 115 LEHLQSPE--EALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIR--VQAY-MKGNSLVGRQI--YPLLQE 187 (276)
T ss_dssp GGGCSCHH--HHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHH--HHHH-TTCCTTGGGGH--HHHHHH
T ss_pred hhhcCCHH--HHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHH--HHHh-cCCCcchHHHH--HHHHHH
Confidence 99998875 89999999999999999988543221 111100 11111111 1122 25666788899 999999
Q ss_pred CCCceeeEEEc
Q 045543 218 NGFKGVNYESF 228 (239)
Q Consensus 218 aGf~~~~~~~~ 228 (239)
+||+++++...
T Consensus 188 aGf~~v~~~~~ 198 (276)
T 3mgg_A 188 SGFEKIRVEPR 198 (276)
T ss_dssp TTCEEEEEEEE
T ss_pred CCCCeEEEeeE
Confidence 99999887654
No 48
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=99.27 E-value=3.4e-11 Score=99.02 Aligned_cols=146 Identities=15% Similarity=0.100 Sum_probs=82.4
Q ss_pred chHHHHHHHHHHhccc----ccHHHHHhhccCCCCcceEEEeCCCCCC--------------------------------
Q 045543 78 SRFNEVLNTAMLSHNS----IVMNRILDYYKGFEKIKQLVDVGGGCGK-------------------------------- 121 (239)
Q Consensus 78 ~~~~~~f~~~m~~~~~----~~~~~~~~~~~~~~~~~~vlDvGGG~G~-------------------------------- 121 (239)
++..+.|...+..... ...+.+.+.++ ..+..+|||||||+|.
T Consensus 10 ~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~ 88 (243)
T 3bkw_A 10 PDFFAGYSQLGRSIEGLDGAAEWPALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD 88 (243)
T ss_dssp ---------------CGGGCTTHHHHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS
T ss_pred HHHHHHHHHhccCCccHHHHHhHHHHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc
Confidence 4455566665554332 22345666666 5567899999999998
Q ss_pred -----Ccccccc-ccCC-c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecC--CCCCCChhh-------
Q 045543 122 -----CGWKMFQ-KILN-G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTV--VIPEATPAT------- 184 (239)
Q Consensus 122 -----~~gD~~~-~~p~-~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~--~~~~~~~~~------- 184 (239)
+.+|+.+ +++. . |+|++.+++|++++. ..+|+++++.|+|||++++...... ......+..
T Consensus 89 ~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (243)
T 3bkw_A 89 TGITYERADLDKLHLPQDSFDLAYSSLALHYVEDV--ARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRT 166 (243)
T ss_dssp SSEEEEECCGGGCCCCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEE
T ss_pred CCceEEEcChhhccCCCCCceEEEEeccccccchH--HHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceE
Confidence 2345554 4443 3 999999999999764 5899999999999999999764211 000000000
Q ss_pred -hhhhhh-----hHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEc
Q 045543 185 -REASSI-----DIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESF 228 (239)
Q Consensus 185 -~~~~~~-----dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~ 228 (239)
.....+ ....+........+|.++| .++|+++||+++++...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 167 WPIDRYLVEGPRKTDWLAKGVVKHHRTVGTT--LNALIRSGFAIEHVEEF 214 (243)
T ss_dssp EEECCTTCCEEECTTHHHHSCCEEECCHHHH--HHHHHHTTCEEEEEEEC
T ss_pred EeecccccccceeeeeccCceEEEeccHHHH--HHHHHHcCCEeeeeccC
Confidence 000000 0000000002234689999 99999999999988753
No 49
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=99.25 E-value=1e-11 Score=102.14 Aligned_cols=128 Identities=11% Similarity=0.051 Sum_probs=82.0
Q ss_pred CcceEEEeCCCCCC--------------------------------------Ccccccc-ccCCc-ceeeech-hhhcCC
Q 045543 108 KIKQLVDVGGGCGK--------------------------------------CGWKMFQ-KILNG-DAILMKL-ILRNWD 146 (239)
Q Consensus 108 ~~~~vlDvGGG~G~--------------------------------------~~gD~~~-~~p~~-D~~~l~~-vlH~~~ 146 (239)
+..+|||||||+|. +.+|+.+ +.+.. |+|++.. +||+++
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~ 116 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYII 116 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGGCC
T ss_pred CCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccccC
Confidence 56899999999998 2345544 34444 9999998 999994
Q ss_pred -hhHHHHHHHHHHhhCCCCceEEEEeeecCCC-----CCCChh---h----hh-------hhhhhHHHhhccCCc-----
Q 045543 147 -DEHCLSLLKNCYEAIPGNGKIIIIDSTTVVI-----PEATPA---T----RE-------ASSIDIIMLMQLSGE----- 201 (239)
Q Consensus 147 -d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~-----~~~~~~---~----~~-------~~~~dl~ml~~~~~g----- 201 (239)
+++...+|+++++.|+|||++++.-.. +.. +..... . .. ....++.++.. .+|
T Consensus 117 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 194 (246)
T 1y8c_A 117 DSDDLKKYFKAVSNHLKEGGVFIFDINS-YYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVR-DGEFYKRF 194 (246)
T ss_dssp SHHHHHHHHHHHHTTEEEEEEEEEEEEC-HHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEE-CSSSEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEecC-HHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEe-cCCccccc
Confidence 477889999999999999999873221 100 000000 0 00 00001111110 111
Q ss_pred ------cccChhhccHHHHHhhCCCceeeEEEc--------CCceeEEEEEC
Q 045543 202 ------KERTKQEYYGMALTAKNGFKGVNYESF--------VCNFYIMEFIK 239 (239)
Q Consensus 202 ------~~rt~~e~~~~~ll~~aGf~~~~~~~~--------~~~~~vie~~k 239 (239)
+.+|.++| .++|+++||+++++... .+...++.++|
T Consensus 195 ~~~~~~~~~~~~~l--~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK 244 (246)
T 1y8c_A 195 DEEHEERAYKEEDI--EKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKL 244 (246)
T ss_dssp EEEEEEECCCHHHH--HHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEE
T ss_pred EEEEEEEcCCHHHH--HHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEe
Confidence 44599999 99999999999998754 23455777775
No 50
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=99.24 E-value=3.3e-11 Score=98.35 Aligned_cols=89 Identities=12% Similarity=0.110 Sum_probs=61.1
Q ss_pred ceeeechhhhcCCh-hHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhcc--------C-----
Q 045543 134 DAILMKLILRNWDD-EHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQL--------S----- 199 (239)
Q Consensus 134 D~~~l~~vlH~~~d-~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~--------~----- 199 (239)
|+|++..++|++++ ++...+|+++++.|+|||++++.+....... + ........++...... .
T Consensus 103 D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (235)
T 3sm3_A 103 DFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHL--K-LYRKRYLHDFPITKEEGSFLARDPETGETE 179 (235)
T ss_dssp EEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTS--H-HHHHHHHHHHHHHCSTTEEEEECTTTCCEE
T ss_pred eEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhH--H-HHHHHhhhhccchhhhcceEecccccCCcc
Confidence 99999999999975 4467999999999999999999987653321 1 0000111111111000 0
Q ss_pred -CccccChhhccHHHHHhhCCCceeeEEE
Q 045543 200 -GEKERTKQEYYGMALTAKNGFKGVNYES 227 (239)
Q Consensus 200 -~g~~rt~~e~~~~~ll~~aGf~~~~~~~ 227 (239)
....++.++| .++|+++||+++++..
T Consensus 180 ~~~~~~~~~~l--~~ll~~aGf~~~~~~~ 206 (235)
T 3sm3_A 180 FIAHHFTEKEL--VFLLTDCRFEIDYFRV 206 (235)
T ss_dssp EEEECBCHHHH--HHHHHTTTEEEEEEEE
T ss_pred eeeEeCCHHHH--HHHHHHcCCEEEEEEe
Confidence 0135789999 9999999999998764
No 51
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=99.24 E-value=2.3e-11 Score=101.03 Aligned_cols=118 Identities=12% Similarity=0.095 Sum_probs=84.2
Q ss_pred HHHhhccCCCCcceEEEeCCCCCC-----------------------------------------Ccccccc-ccCC-c-
Q 045543 98 RILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQ-KILN-G- 133 (239)
Q Consensus 98 ~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~-~~p~-~- 133 (239)
.+++.+..+.+..+|||||||+|. +.+|+.+ +++. .
T Consensus 36 ~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 115 (257)
T 3f4k_A 36 KAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEEL 115 (257)
T ss_dssp HHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCE
T ss_pred HHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCE
Confidence 444555336677899999999998 3455544 4443 3
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHH
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMA 213 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ 213 (239)
|+|++..++|+++ ...+|+++++.|+|||++++.+.......... ...+...-. ....++.+++ .+
T Consensus 116 D~v~~~~~l~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~--~~ 181 (257)
T 3f4k_A 116 DLIWSEGAIYNIG---FERGMNEWSKYLKKGGFIAVSEASWFTSERPA------EIEDFWMDA---YPEISVIPTC--ID 181 (257)
T ss_dssp EEEEEESCSCCCC---HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCH------HHHHHHHHH---CTTCCBHHHH--HH
T ss_pred EEEEecChHhhcC---HHHHHHHHHHHcCCCcEEEEEEeeccCCCChH------HHHHHHHHh---CCCCCCHHHH--HH
Confidence 9999999999993 35899999999999999999997654433221 111111111 1235689999 99
Q ss_pred HHhhCCCceeeEEEcC
Q 045543 214 LTAKNGFKGVNYESFV 229 (239)
Q Consensus 214 ll~~aGf~~~~~~~~~ 229 (239)
+|+++||++++....+
T Consensus 182 ~l~~aGf~~v~~~~~~ 197 (257)
T 3f4k_A 182 KMERAGYTPTAHFILP 197 (257)
T ss_dssp HHHHTTEEEEEEEECC
T ss_pred HHHHCCCeEEEEEECC
Confidence 9999999999887664
No 52
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=99.23 E-value=2.2e-11 Score=100.18 Aligned_cols=131 Identities=14% Similarity=0.159 Sum_probs=81.6
Q ss_pred CCcceEEEeCCCCCC-------------------------------------Ccccccc-ccCCc-ceeeech-hhhcC-
Q 045543 107 EKIKQLVDVGGGCGK-------------------------------------CGWKMFQ-KILNG-DAILMKL-ILRNW- 145 (239)
Q Consensus 107 ~~~~~vlDvGGG~G~-------------------------------------~~gD~~~-~~p~~-D~~~l~~-vlH~~- 145 (239)
....+|||||||+|. +.+|+.+ +.+.. |+|++.. ++|++
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~ 111 (243)
T 3d2l_A 32 EPGKRIADIGCGTGTATLLLADHYEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLNYLQ 111 (243)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTTSEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGGGCC
T ss_pred CCCCeEEEecCCCCHHHHHHhhCCeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchhhcC
Confidence 345899999999997 2345544 34444 9999986 99988
Q ss_pred ChhHHHHHHHHHHhhCCCCceEEEEeeec-------CCC-----CCC-C--hhh-----hhhhhhhHHHhhccCCc----
Q 045543 146 DDEHCLSLLKNCYEAIPGNGKIIIIDSTT-------VVI-----PEA-T--PAT-----REASSIDIIMLMQLSGE---- 201 (239)
Q Consensus 146 ~d~~~~~iL~~~~~aL~pgg~lli~d~~~-------~~~-----~~~-~--~~~-----~~~~~~dl~ml~~~~~g---- 201 (239)
+.++...+|+++++.|+|||++++.-... ++. ... . +.. ......++.++....+|
T Consensus 112 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (243)
T 3d2l_A 112 TEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVHELTFFIEGEDGRYDR 191 (243)
T ss_dssp SHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHHTTTSSEEEEEECSSEEEEEEEEECSSTTEEEEEEEEEEECTTSCEEE
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHHhcCCcceeEECCCcEEEEEeecCccccEEEEEEEEEEEcCCCceEE
Confidence 56778899999999999999998732110 000 000 0 000 00000111111111112
Q ss_pred -------cccChhhccHHHHHhhCCCceeeEEEc--------CCceeEEEEEC
Q 045543 202 -------KERTKQEYYGMALTAKNGFKGVNYESF--------VCNFYIMEFIK 239 (239)
Q Consensus 202 -------~~rt~~e~~~~~ll~~aGf~~~~~~~~--------~~~~~vie~~k 239 (239)
+.+|.+++ .++|+++||+++++... .+...++.|+|
T Consensus 192 ~~~~~~~~~~~~~~l--~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~va~K 242 (243)
T 3d2l_A 192 VDETHHQRTYPPEQY--ITWLREAGFRVCAVTGDFKSDAPTETAERIFFVAEK 242 (243)
T ss_dssp EEEEEEEECCCHHHH--HHHHHHTTEEEEEEEETTSSSCCCTTCSEEEEEEEE
T ss_pred EEEEEeEecCCHHHH--HHHHHHCCCeEEEEecCcccCCCCCCceEEEEEEEe
Confidence 34699999 99999999999998753 13455777775
No 53
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=99.23 E-value=1.5e-11 Score=101.17 Aligned_cols=110 Identities=19% Similarity=0.151 Sum_probs=78.6
Q ss_pred CCcceEEEeCCCCCC------------------------------------Ccccccc-ccCC-c-ceeeechhhhcCCh
Q 045543 107 EKIKQLVDVGGGCGK------------------------------------CGWKMFQ-KILN-G-DAILMKLILRNWDD 147 (239)
Q Consensus 107 ~~~~~vlDvGGG~G~------------------------------------~~gD~~~-~~p~-~-D~~~l~~vlH~~~d 147 (239)
++..+|||||||+|. +.+|+.+ +++. . |+|++.+++|++++
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 131 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEE 131 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSSC
T ss_pred CCCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhccC
Confidence 456799999999998 3456655 4543 3 99999999999977
Q ss_pred hHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEE
Q 045543 148 EHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYES 227 (239)
Q Consensus 148 ~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~ 227 (239)
. ..+|+++++.|+|||+++|.+......... ..+..... .......++.+++ .++++++||++++...
T Consensus 132 ~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~~--~~~l~~~Gf~~~~~~~ 199 (242)
T 3l8d_A 132 P--LRALNEIKRVLKSDGYACIAILGPTAKPRE---NSYPRLYG-----KDVVCNTMMPWEF--EQLVKEQGFKVVDGIG 199 (242)
T ss_dssp H--HHHHHHHHHHEEEEEEEEEEEECTTCGGGG---GGGGGGGT-----CCCSSCCCCHHHH--HHHHHHTTEEEEEEEE
T ss_pred H--HHHHHHHHHHhCCCeEEEEEEcCCcchhhh---hhhhhhcc-----ccccccCCCHHHH--HHHHHHcCCEEEEeec
Confidence 6 488999999999999999987543322110 01111111 0112345788999 9999999999998775
Q ss_pred c
Q 045543 228 F 228 (239)
Q Consensus 228 ~ 228 (239)
+
T Consensus 200 ~ 200 (242)
T 3l8d_A 200 V 200 (242)
T ss_dssp E
T ss_pred c
Confidence 4
No 54
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=99.22 E-value=6.2e-11 Score=94.40 Aligned_cols=110 Identities=17% Similarity=0.175 Sum_probs=82.2
Q ss_pred HHHHhhccCCCCcceEEEeCCCCCC---------------------------------------Ccccccc-ccCCc-ce
Q 045543 97 NRILDYYKGFEKIKQLVDVGGGCGK---------------------------------------CGWKMFQ-KILNG-DA 135 (239)
Q Consensus 97 ~~~~~~~~~~~~~~~vlDvGGG~G~---------------------------------------~~gD~~~-~~p~~-D~ 135 (239)
+.+++.++ ..+..+|||||||+|. +.+|+.+ +.+.. |+
T Consensus 22 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~ 100 (199)
T 2xvm_A 22 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDF 100 (199)
T ss_dssp HHHHHHTT-TSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEEE
T ss_pred HHHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCceE
Confidence 45666666 5666899999999998 2345544 33334 99
Q ss_pred eeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHH
Q 045543 136 ILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALT 215 (239)
Q Consensus 136 ~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll 215 (239)
|++..++|++++++...+|+++++.|+|||++++++...++....+ ......++.+++ ++++
T Consensus 101 v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~----------------~~~~~~~~~~~l--~~~~ 162 (199)
T 2xvm_A 101 ILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT----------------VGFPFAFKEGEL--RRYY 162 (199)
T ss_dssp EEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCC----------------SCCSCCBCTTHH--HHHT
T ss_pred EEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCC----------------CCCCCccCHHHH--HHHh
Confidence 9999999999988889999999999999999999887654432110 002234688899 9999
Q ss_pred hhCCCceeeEEE
Q 045543 216 AKNGFKGVNYES 227 (239)
Q Consensus 216 ~~aGf~~~~~~~ 227 (239)
++ |++++...
T Consensus 163 ~~--f~~~~~~~ 172 (199)
T 2xvm_A 163 EG--WERVKYNE 172 (199)
T ss_dssp TT--SEEEEEEC
T ss_pred cC--CeEEEecc
Confidence 87 99887643
No 55
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=99.21 E-value=3.4e-11 Score=100.95 Aligned_cols=118 Identities=16% Similarity=0.106 Sum_probs=84.2
Q ss_pred HHHhhccCCCCcceEEEeCCCCCC-----------------------------------------Ccccccc-ccCC-c-
Q 045543 98 RILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQ-KILN-G- 133 (239)
Q Consensus 98 ~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~-~~p~-~- 133 (239)
.+++.++.+.+..+|||||||+|. +.+|+.+ +++. .
T Consensus 36 ~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 115 (267)
T 3kkz_A 36 KALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEEL 115 (267)
T ss_dssp HHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCE
T ss_pred HHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCE
Confidence 344444435677899999999998 3345544 4443 3
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHH
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMA 213 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ 213 (239)
|+|++..++|+++ ...+|+++++.|+|||++++.+.......... ...+...- . ....++.+++ .+
T Consensus 116 D~i~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~------~~~~~~~~-~--~~~~~~~~~~--~~ 181 (267)
T 3kkz_A 116 DLIWSEGAIYNIG---FERGLNEWRKYLKKGGYLAVSECSWFTDERPA------EINDFWMD-A--YPEIDTIPNQ--VA 181 (267)
T ss_dssp EEEEESSCGGGTC---HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCH------HHHHHHHH-H--CTTCEEHHHH--HH
T ss_pred EEEEEcCCceecC---HHHHHHHHHHHcCCCCEEEEEEeeecCCCChH------HHHHHHHH-h--CCCCCCHHHH--HH
Confidence 9999999999993 35889999999999999999998755433221 11111111 1 2345688999 99
Q ss_pred HHhhCCCceeeEEEcC
Q 045543 214 LTAKNGFKGVNYESFV 229 (239)
Q Consensus 214 ll~~aGf~~~~~~~~~ 229 (239)
+++++||+++++..++
T Consensus 182 ~l~~aGf~~v~~~~~~ 197 (267)
T 3kkz_A 182 KIHKAGYLPVATFILP 197 (267)
T ss_dssp HHHHTTEEEEEEEECC
T ss_pred HHHHCCCEEEEEEECC
Confidence 9999999999887765
No 56
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=99.20 E-value=6.4e-11 Score=99.17 Aligned_cols=120 Identities=13% Similarity=0.165 Sum_probs=82.8
Q ss_pred HHHHHhhccCCCCcceEEEeCCCCCC---------------------------------Ccccccc-ccCC-c-ceeeec
Q 045543 96 MNRILDYYKGFEKIKQLVDVGGGCGK---------------------------------CGWKMFQ-KILN-G-DAILMK 139 (239)
Q Consensus 96 ~~~~~~~~~~~~~~~~vlDvGGG~G~---------------------------------~~gD~~~-~~p~-~-D~~~l~ 139 (239)
...+++.++ ..+..+|||||||+|. +.+|+.+ +++. . |+|++.
T Consensus 23 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 101 (261)
T 3ege_A 23 VNAIINLLN-LPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISI 101 (261)
T ss_dssp HHHHHHHHC-CCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEEE
T ss_pred HHHHHHHhC-CCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEEc
Confidence 345566666 6778999999999998 3456554 4553 3 999999
Q ss_pred hhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCC
Q 045543 140 LILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNG 219 (239)
Q Consensus 140 ~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aG 219 (239)
+++|+++|. ..+|+++++.|+ ||++++.+...+..... +. ...+.- +.... ....++.+++ . +|+++|
T Consensus 102 ~~l~~~~~~--~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~-~~---~~~~~~-~~~~~-~~~~~~~~~~--~-~l~~aG 169 (261)
T 3ege_A 102 LAIHHFSHL--EKSFQEMQRIIR-DGTIVLLTFDIRLAQRI-WL---YDYFPF-LWEDA-LRFLPLDEQI--N-LLQENT 169 (261)
T ss_dssp SCGGGCSSH--HHHHHHHHHHBC-SSCEEEEEECGGGCCCC-GG---GGTCHH-HHHHH-HTSCCHHHHH--H-HHHHHH
T ss_pred chHhhccCH--HHHHHHHHHHhC-CcEEEEEEcCCchhHHH-HH---HHHHHH-Hhhhh-hhhCCCHHHH--H-HHHHcC
Confidence 999999765 589999999999 99999998754332211 11 111111 11111 2334566777 8 999999
Q ss_pred CceeeEEEc
Q 045543 220 FKGVNYESF 228 (239)
Q Consensus 220 f~~~~~~~~ 228 (239)
|+.+++...
T Consensus 170 F~~v~~~~~ 178 (261)
T 3ege_A 170 KRRVEAIPF 178 (261)
T ss_dssp CSEEEEEEC
T ss_pred CCceeEEEe
Confidence 999887664
No 57
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=99.19 E-value=8.2e-11 Score=96.67 Aligned_cols=112 Identities=14% Similarity=0.210 Sum_probs=76.8
Q ss_pred CCCcceEEEeCCCCCC-----------------------------------CccccccccCC-c-ceeeechhhhcCChh
Q 045543 106 FEKIKQLVDVGGGCGK-----------------------------------CGWKMFQKILN-G-DAILMKLILRNWDDE 148 (239)
Q Consensus 106 ~~~~~~vlDvGGG~G~-----------------------------------~~gD~~~~~p~-~-D~~~l~~vlH~~~d~ 148 (239)
..+..+|||||||+|. +.+|+.+..+. . |+|++.++||+++|.
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 119 (250)
T 2p7i_A 40 FFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDDP 119 (250)
T ss_dssp GCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSSH
T ss_pred hcCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcCH
Confidence 3455789999999998 12344443333 3 999999999999876
Q ss_pred HHHHHHHHHH-hhCCCCceEEEEeeecCCCCCCChhhhhh----------hhhhHHHhhccCCccccChhhccHHHHHhh
Q 045543 149 HCLSLLKNCY-EAIPGNGKIIIIDSTTVVIPEATPATREA----------SSIDIIMLMQLSGEKERTKQEYYGMALTAK 217 (239)
Q Consensus 149 ~~~~iL~~~~-~aL~pgg~lli~d~~~~~~~~~~~~~~~~----------~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~ 217 (239)
..+|++++ +.|+|||+++|.+...... ..... .+.+... . ....+.+|.+++ .++|++
T Consensus 120 --~~~l~~~~~~~LkpgG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~--~~~l~~ 188 (250)
T 2p7i_A 120 --VALLKRINDDWLAEGGRLFLVCPNANAV-----SRQIAVKMGIISHNSAVTEAEF-A-HGHRCTYALDTL--ERDASR 188 (250)
T ss_dssp --HHHHHHHHHTTEEEEEEEEEEEECTTCH-----HHHHHHHTTSSSSTTCCCHHHH-H-TTCCCCCCHHHH--HHHHHH
T ss_pred --HHHHHHHHHHhcCCCCEEEEEcCChHHH-----HHHHHHHcCccccchhcccccc-c-ccccccCCHHHH--HHHHHH
Confidence 58999999 9999999999987532210 00000 0000000 1 113456799999 999999
Q ss_pred CCCceeeEEEc
Q 045543 218 NGFKGVNYESF 228 (239)
Q Consensus 218 aGf~~~~~~~~ 228 (239)
+||+++++...
T Consensus 189 ~Gf~~~~~~~~ 199 (250)
T 2p7i_A 189 AGLQVTYRSGI 199 (250)
T ss_dssp TTCEEEEEEEE
T ss_pred CCCeEEEEeee
Confidence 99999987653
No 58
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.19 E-value=1.5e-10 Score=94.19 Aligned_cols=110 Identities=20% Similarity=0.165 Sum_probs=75.7
Q ss_pred cceEEEeCCCCCC----------------------------Ccccccc-ccCC-c-ceeeechhhhcCChhHHHHHHHHH
Q 045543 109 IKQLVDVGGGCGK----------------------------CGWKMFQ-KILN-G-DAILMKLILRNWDDEHCLSLLKNC 157 (239)
Q Consensus 109 ~~~vlDvGGG~G~----------------------------~~gD~~~-~~p~-~-D~~~l~~vlH~~~d~~~~~iL~~~ 157 (239)
..+|||||||+|. +.+|+.+ +++. . |+|++.+++|++++. ..+|+++
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~~~vD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~ 125 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIKIGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDP--ERALKEA 125 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCCEEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH--HHHHHHH
T ss_pred CCcEEEeCCCCCHHHHHHHHHhccCCCHHHHHHHHhcCCEEEEcccccCCCCCCCeeEEEEcchHhhccCH--HHHHHHH
Confidence 6799999999997 2345544 4443 3 999999999999765 5899999
Q ss_pred HhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEc
Q 045543 158 YEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESF 228 (239)
Q Consensus 158 ~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~ 228 (239)
++.|+|||++++.+..... + ......... ...........++.+++ .++|+++||+++++...
T Consensus 126 ~~~L~pgG~l~i~~~~~~~----~-~~~~~~~~~-~~~~~~~~~~~~~~~~l--~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 126 YRILKKGGYLIVGIVDRES----F-LGREYEKNK-EKSVFYKNARFFSTEEL--MDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp HHHEEEEEEEEEEEECSSS----H-HHHHHHHTT-TC-CCSTTCCCCCHHHH--HHHHHHTTCEEEEEEEE
T ss_pred HHHcCCCcEEEEEEeCCcc----H-HHHHHHHHh-cCcchhcccccCCHHHH--HHHHHHCCCeEEEEecc
Confidence 9999999999998753211 1 100000000 00000112455799999 99999999999887654
No 59
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=99.17 E-value=1e-10 Score=97.29 Aligned_cols=114 Identities=11% Similarity=0.070 Sum_probs=74.2
Q ss_pred CCCcceEEEeCCCCCC--------------------------------------Ccccccc-ccCC-c-ceeeechhhhc
Q 045543 106 FEKIKQLVDVGGGCGK--------------------------------------CGWKMFQ-KILN-G-DAILMKLILRN 144 (239)
Q Consensus 106 ~~~~~~vlDvGGG~G~--------------------------------------~~gD~~~-~~p~-~-D~~~l~~vlH~ 144 (239)
+.+..+|||||||+|. +.+|+.+ +++. . |+|++.+++|+
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 116 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHL 116 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchhh
Confidence 5677899999999998 2344443 3444 3 99999999999
Q ss_pred CChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccC---CccccChhhccHHHHHhhCCCc
Q 045543 145 WDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLS---GEKERTKQEYYGMALTAKNGFK 221 (239)
Q Consensus 145 ~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~---~g~~rt~~e~~~~~ll~~aGf~ 221 (239)
++|. ..+|+++++.|+|||++++. ...++ ..+.......+..+......+ ....++.+++ .++|+++||+
T Consensus 117 ~~~~--~~~l~~~~~~L~pgG~l~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~Gf~ 189 (263)
T 2yqz_A 117 VPDW--PKVLAEAIRVLKPGGALLEG-WDQAE--ASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEV--EEALRRLGLK 189 (263)
T ss_dssp CTTH--HHHHHHHHHHEEEEEEEEEE-EEEEC--CCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHTTCC
T ss_pred cCCH--HHHHHHHHHHCCCCcEEEEE-ecCCC--ccHHHHHHHHHHHHHHHhCCCcccccccCCHHHH--HHHHHHcCCC
Confidence 9864 58999999999999999987 22211 111000011111111111010 1234578889 9999999999
Q ss_pred eeeEE
Q 045543 222 GVNYE 226 (239)
Q Consensus 222 ~~~~~ 226 (239)
++.+.
T Consensus 190 ~~~~~ 194 (263)
T 2yqz_A 190 PRTRE 194 (263)
T ss_dssp CEEEE
T ss_pred cceEE
Confidence 87653
No 60
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.17 E-value=2.2e-10 Score=90.58 Aligned_cols=118 Identities=15% Similarity=0.188 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhcccc-cHHHHHhhccCCCCcceEEEeCCCCCC----------------------------------Ccc
Q 045543 80 FNEVLNTAMLSHNSI-VMNRILDYYKGFEKIKQLVDVGGGCGK----------------------------------CGW 124 (239)
Q Consensus 80 ~~~~f~~~m~~~~~~-~~~~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------~~g 124 (239)
+.+.|.......... ....++..+ ..+..+|||||||+|. +.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~ 96 (195)
T 3cgg_A 19 YAQRWRNLAAAGNDIYGEARLIDAM--APRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPEARWVVG 96 (195)
T ss_dssp HHHHHHHHHHHCCCCCHHHHHHHHH--SCTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSEEEEC
T ss_pred HHHHHHHHHHhccchhhHHHHHHHh--ccCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCCCCcEEEc
Confidence 344555444432222 123556555 3567899999999998 345
Q ss_pred cccc-ccCC-c-ceeeec-hhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCC
Q 045543 125 KMFQ-KILN-G-DAILMK-LILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSG 200 (239)
Q Consensus 125 D~~~-~~p~-~-D~~~l~-~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~ 200 (239)
|+.+ +++. . |+|++. .++|++++++...+|+++++.|+|||++++....
T Consensus 97 d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~--------------------------- 149 (195)
T 3cgg_A 97 DLSVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGA--------------------------- 149 (195)
T ss_dssp CTTTSCCCCCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEET---------------------------
T ss_pred ccccCCCCCCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCC---------------------------
Confidence 6665 4543 3 999998 8999999888899999999999999999885421
Q ss_pred ccccChhhccHHHHHhhCCCceeeEEEc
Q 045543 201 EKERTKQEYYGMALTAKNGFKGVNYESF 228 (239)
Q Consensus 201 g~~rt~~e~~~~~ll~~aGf~~~~~~~~ 228 (239)
...++.+++ .++++++||++++....
T Consensus 150 ~~~~~~~~~--~~~l~~~Gf~~~~~~~~ 175 (195)
T 3cgg_A 150 GRGWVFGDF--LEVAERVGLELENAFES 175 (195)
T ss_dssp TSSCCHHHH--HHHHHHHTEEEEEEESS
T ss_pred CCCcCHHHH--HHHHHHcCCEEeeeecc
Confidence 112577889 99999999999887543
No 61
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=99.17 E-value=6.3e-11 Score=100.25 Aligned_cols=123 Identities=18% Similarity=0.197 Sum_probs=80.8
Q ss_pred HHHhhccCCCCcceEEEeCCCCCC----------------------------------------Ccccccc-c-cCC-c-
Q 045543 98 RILDYYKGFEKIKQLVDVGGGCGK----------------------------------------CGWKMFQ-K-ILN-G- 133 (239)
Q Consensus 98 ~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~-~-~p~-~- 133 (239)
.+++.++ . +..+|||||||+|. +.+|+.+ + ++. .
T Consensus 60 ~~l~~~~-~-~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~f 137 (285)
T 4htf_A 60 RVLAEMG-P-QKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPV 137 (285)
T ss_dssp HHHHHTC-S-SCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCE
T ss_pred HHHHhcC-C-CCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCc
Confidence 4444554 3 35799999999998 3345544 2 333 3
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhc-------cCCccccCh
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQ-------LSGEKERTK 206 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~-------~~~g~~rt~ 206 (239)
|+|++.+++|++++. ..+|+++++.|+|||++++.+........ .......++...-.. ......++.
T Consensus 138 D~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (285)
T 4htf_A 138 DLILFHAVLEWVADP--RSVLQTLWSVLRPGGVLSLMFYNAHGLLM---HNMVAGNFDYVQAGMPKKKKRTLSPDYPRDP 212 (285)
T ss_dssp EEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEEBHHHHHH---HHHHTTCHHHHHTTCCCC----CCCSCCBCH
T ss_pred eEEEECchhhcccCH--HHHHHHHHHHcCCCeEEEEEEeCCchHHH---HHHHhcCHHHHhhhccccccccCCCCCCCCH
Confidence 999999999999876 58999999999999999998764322100 000000001100000 012245688
Q ss_pred hhccHHHHHhhCCCceeeEEEcC
Q 045543 207 QEYYGMALTAKNGFKGVNYESFV 229 (239)
Q Consensus 207 ~e~~~~~ll~~aGf~~~~~~~~~ 229 (239)
+++ .++|+++||+++++..+.
T Consensus 213 ~~l--~~~l~~aGf~v~~~~~~~ 233 (285)
T 4htf_A 213 TQV--YLWLEEAGWQIMGKTGVR 233 (285)
T ss_dssp HHH--HHHHHHTTCEEEEEEEES
T ss_pred HHH--HHHHHHCCCceeeeeeEE
Confidence 999 999999999999887653
No 62
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=99.16 E-value=8.2e-11 Score=95.59 Aligned_cols=132 Identities=14% Similarity=0.134 Sum_probs=82.7
Q ss_pred HHHHHHHHhcccccHHHHHhhccCCCCcceEEEeCCCCCC--------------------------------Ccccccc-
Q 045543 82 EVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGK--------------------------------CGWKMFQ- 128 (239)
Q Consensus 82 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGGG~G~--------------------------------~~gD~~~- 128 (239)
..|...+..........+++.++ .+..+|||||||+|. +.+|+.+
T Consensus 8 ~~y~~~~~~~~~~~~~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~ 85 (230)
T 3cc8_A 8 SLYEEKSGHYYNAVNPNLLKHIK--KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKLDHVVLGDIETM 85 (230)
T ss_dssp ------------CCCHHHHTTCC--TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTSSEEEESCTTTC
T ss_pred hhhhccchhHHHHHHHHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCCcEEEcchhhc
Confidence 34444444444444456666665 566899999999998 3355543
Q ss_pred --ccCC-c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHH--hhc-----
Q 045543 129 --KILN-G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIM--LMQ----- 197 (239)
Q Consensus 129 --~~p~-~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~m--l~~----- 197 (239)
+++. . |+|++.+++|++++. ..+|+++++.|+|||++++........ .....+.. +..
T Consensus 86 ~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 154 (230)
T 3cc8_A 86 DMPYEEEQFDCVIFGDVLEHLFDP--WAVIEKVKPYIKQNGVILASIPNVSHI---------SVLAPLLAGNWTYTEYGL 154 (230)
T ss_dssp CCCSCTTCEEEEEEESCGGGSSCH--HHHHHHTGGGEEEEEEEEEEEECTTSH---------HHHHHHHTTCCCCBSSST
T ss_pred CCCCCCCccCEEEECChhhhcCCH--HHHHHHHHHHcCCCCEEEEEeCCcchH---------HHHHHHhcCCceeccCCC
Confidence 3343 3 999999999999876 489999999999999999976432210 00000000 000
Q ss_pred --cCCccccChhhccHHHHHhhCCCceeeEEEc
Q 045543 198 --LSGEKERTKQEYYGMALTAKNGFKGVNYESF 228 (239)
Q Consensus 198 --~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~ 228 (239)
....+.+|.++| .++++++||+++++...
T Consensus 155 ~~~~~~~~~~~~~~--~~~l~~~Gf~~~~~~~~ 185 (230)
T 3cc8_A 155 LDKTHIRFFTFNEM--LRMFLKAGYSISKVDRV 185 (230)
T ss_dssp TBTTCCCCCCHHHH--HHHHHHTTEEEEEEEEE
T ss_pred CCcceEEEecHHHH--HHHHHHcCCeEEEEEec
Confidence 001244689999 99999999999988764
No 63
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=99.14 E-value=1.7e-10 Score=97.81 Aligned_cols=125 Identities=13% Similarity=0.127 Sum_probs=81.2
Q ss_pred HHHhhccCCCCcceEEEeCCCCCC-----------------------------------------Ccccccc-ccCCc-c
Q 045543 98 RILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQ-KILNG-D 134 (239)
Q Consensus 98 ~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~-~~p~~-D 134 (239)
.+++.+....+..+|||||||+|. +.+|+.+ +.+.. |
T Consensus 12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 91 (284)
T 3gu3_A 12 FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYD 91 (284)
T ss_dssp HHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEE
T ss_pred HHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCee
Confidence 334444326677999999999998 3345554 33444 9
Q ss_pred eeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeec-----C---CCCCCChhhhhhhhhhHHH--hhccCCcccc
Q 045543 135 AILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTT-----V---VIPEATPATREASSIDIIM--LMQLSGEKER 204 (239)
Q Consensus 135 ~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~-----~---~~~~~~~~~~~~~~~dl~m--l~~~~~g~~r 204 (239)
+|++..++|+++|. ..+|+++++.|+|||++++.+... . ++...+.......+..+.. .... +....
T Consensus 92 ~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 168 (284)
T 3gu3_A 92 IAICHAFLLHMTTP--ETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRN-GKDGN 168 (284)
T ss_dssp EEEEESCGGGCSSH--HHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHT-CCCTT
T ss_pred EEEECChhhcCCCH--HHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhh-ccccc
Confidence 99999999999876 499999999999999999988651 1 1111000000111111111 1111 34455
Q ss_pred ChhhccHHHHHhhCCCceeeEEE
Q 045543 205 TKQEYYGMALTAKNGFKGVNYES 227 (239)
Q Consensus 205 t~~e~~~~~ll~~aGf~~~~~~~ 227 (239)
+..++ .++|+++||+.+++..
T Consensus 169 ~~~~l--~~~l~~aGF~~v~~~~ 189 (284)
T 3gu3_A 169 IGMKI--PIYLSELGVKNIECRV 189 (284)
T ss_dssp GGGTH--HHHHHHTTCEEEEEEE
T ss_pred HHHHH--HHHHHHcCCCeEEEEE
Confidence 67788 9999999999887643
No 64
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=99.14 E-value=3.9e-11 Score=99.64 Aligned_cols=127 Identities=17% Similarity=0.106 Sum_probs=79.9
Q ss_pred HHHHhhccCCCCcceEEEeCCCCCC-------------------------------------Ccccccc-ccCC-c-cee
Q 045543 97 NRILDYYKGFEKIKQLVDVGGGCGK-------------------------------------CGWKMFQ-KILN-G-DAI 136 (239)
Q Consensus 97 ~~~~~~~~~~~~~~~vlDvGGG~G~-------------------------------------~~gD~~~-~~p~-~-D~~ 136 (239)
+.+.+.++ ..+..+|||||||+|. +.+|+.+ +++. . |+|
T Consensus 34 ~~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 112 (253)
T 3g5l_A 34 HELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVV 112 (253)
T ss_dssp HHHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEE
T ss_pred HHHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEE
Confidence 34555555 4567899999999998 3456554 4443 3 999
Q ss_pred eechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecC---C--------CCCCChhhhhhhhhhH-----HHhhccCC
Q 045543 137 LMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTV---V--------IPEATPATREASSIDI-----IMLMQLSG 200 (239)
Q Consensus 137 ~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~---~--------~~~~~~~~~~~~~~dl-----~ml~~~~~ 200 (239)
++..++|++++. ..+|+++++.|+|||++++...... . .............++- ..+.....
T Consensus 113 ~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (253)
T 3g5l_A 113 LSSLALHYIASF--DDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQ 190 (253)
T ss_dssp EEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEE
T ss_pred EEchhhhhhhhH--HHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCc
Confidence 999999999664 6999999999999999999643210 0 0000000000000000 00000001
Q ss_pred ccccChhhccHHHHHhhCCCceeeEEEc
Q 045543 201 EKERTKQEYYGMALTAKNGFKGVNYESF 228 (239)
Q Consensus 201 g~~rt~~e~~~~~ll~~aGf~~~~~~~~ 228 (239)
...+|.++| .++|+++||+++++...
T Consensus 191 ~~~~t~~~~--~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 191 KYHRTVTTY--IQTLLKNGFQINSVIEP 216 (253)
T ss_dssp EECCCHHHH--HHHHHHTTEEEEEEECC
T ss_pred cEecCHHHH--HHHHHHcCCeeeeeecC
Confidence 123499999 99999999999988743
No 65
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=99.13 E-value=3e-11 Score=97.96 Aligned_cols=122 Identities=16% Similarity=0.088 Sum_probs=79.4
Q ss_pred HHHHhhccCCCCcceEEEeCCCCCC---------------------------------Ccccccc----ccC--C-ccee
Q 045543 97 NRILDYYKGFEKIKQLVDVGGGCGK---------------------------------CGWKMFQ----KIL--N-GDAI 136 (239)
Q Consensus 97 ~~~~~~~~~~~~~~~vlDvGGG~G~---------------------------------~~gD~~~----~~p--~-~D~~ 136 (239)
..+++.+. .....+|||||||+|. ..+|+.+ +.+ . .|+|
T Consensus 42 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v 120 (227)
T 3e8s_A 42 QAILLAIL-GRQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLI 120 (227)
T ss_dssp HHHHHHHH-HTCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEE
T ss_pred HHHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEE
Confidence 34666665 4556999999999998 2233322 112 2 3999
Q ss_pred eechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhcc-----CCccccChhhccH
Q 045543 137 LMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQL-----SGEKERTKQEYYG 211 (239)
Q Consensus 137 ~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~-----~~g~~rt~~e~~~ 211 (239)
++.+++| +.+. ..+|+++++.|+|||+++|.+............ ..+......... .....+|.++|
T Consensus 121 ~~~~~l~-~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 192 (227)
T 3e8s_A 121 CANFALL-HQDI--IELLSAMRTLLVPGGALVIQTLHPWSVADGDYQ---DGWREESFAGFAGDWQPMPWYFRTLASW-- 192 (227)
T ss_dssp EEESCCC-SSCC--HHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCS---CEEEEECCTTSSSCCCCEEEEECCHHHH--
T ss_pred EECchhh-hhhH--HHHHHHHHHHhCCCeEEEEEecCccccCccccc---cccchhhhhccccCcccceEEEecHHHH--
Confidence 9999999 6554 489999999999999999988654332221100 000000000000 01134699999
Q ss_pred HHHHhhCCCceeeEEE
Q 045543 212 MALTAKNGFKGVNYES 227 (239)
Q Consensus 212 ~~ll~~aGf~~~~~~~ 227 (239)
.++|+++||+++++..
T Consensus 193 ~~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 193 LNALDMAGLRLVSLQE 208 (227)
T ss_dssp HHHHHHTTEEEEEEEC
T ss_pred HHHHHHcCCeEEEEec
Confidence 9999999999998875
No 66
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=99.13 E-value=7.2e-11 Score=99.65 Aligned_cols=124 Identities=15% Similarity=0.138 Sum_probs=82.8
Q ss_pred cHHHHHhhccCCCCcceEEEeCCCCCC----------------------------------Ccccccc-ccCCc-ceeee
Q 045543 95 VMNRILDYYKGFEKIKQLVDVGGGCGK----------------------------------CGWKMFQ-KILNG-DAILM 138 (239)
Q Consensus 95 ~~~~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------~~gD~~~-~~p~~-D~~~l 138 (239)
....+++.++ ..+..+|||||||+|. +.+|+.+ +++.. |+|++
T Consensus 45 ~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 123 (279)
T 3ccf_A 45 YGEDLLQLLN-PQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFS 123 (279)
T ss_dssp SCCHHHHHHC-CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEE
T ss_pred HHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEE
Confidence 3456677776 6777899999999998 3345544 33334 99999
Q ss_pred chhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhh------ccCCccccChhhccHH
Q 045543 139 KLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLM------QLSGEKERTKQEYYGM 212 (239)
Q Consensus 139 ~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~------~~~~g~~rt~~e~~~~ 212 (239)
.+++|+++|. ..+|+++++.|+|||++++........ . .....+....... ....-..++.+++ .
T Consensus 124 ~~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 194 (279)
T 3ccf_A 124 NAMLHWVKEP--EAAIASIHQALKSGGRFVAEFGGKGNI--K---YILEALYNALETLGIHNPQALNPWYFPSIGEY--V 194 (279)
T ss_dssp ESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECTTTT--H---HHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHH--H
T ss_pred cchhhhCcCH--HHHHHHHHHhcCCCcEEEEEecCCcch--H---HHHHHHHHHHHhcCCccccCcCceeCCCHHHH--H
Confidence 9999999876 489999999999999999876532211 0 0111111110000 0001134588999 9
Q ss_pred HHHhhCCCceeeEEEc
Q 045543 213 ALTAKNGFKGVNYESF 228 (239)
Q Consensus 213 ~ll~~aGf~~~~~~~~ 228 (239)
++|+++||+++++...
T Consensus 195 ~~l~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 195 NILEKQGFDVTYAALF 210 (279)
T ss_dssp HHHHHHTEEEEEEEEE
T ss_pred HHHHHcCCEEEEEEEe
Confidence 9999999999876544
No 67
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=99.08 E-value=3.6e-10 Score=91.70 Aligned_cols=81 Identities=14% Similarity=0.112 Sum_probs=52.9
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHH-
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGM- 212 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~- 212 (239)
|+|++..++|++++++..++|+++++.|+|||.+++.........-+ ......+.. ......++.+++ .
T Consensus 104 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~l--~~ 173 (219)
T 3jwg_A 104 DAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYG-------NLFEGNLRH-RDHRFEWTRKEF--QT 173 (219)
T ss_dssp SEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCC-------CT-----GG-GCCTTSBCHHHH--HH
T ss_pred CEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhc-------ccCcccccc-cCceeeecHHHH--HH
Confidence 99999999999999988999999999999999666554321110000 000000000 112334588888 7
Q ss_pred ---HHHhhCCCceee
Q 045543 213 ---ALTAKNGFKGVN 224 (239)
Q Consensus 213 ---~ll~~aGf~~~~ 224 (239)
++++++||++.-
T Consensus 174 ~~~~l~~~~Gf~v~~ 188 (219)
T 3jwg_A 174 WAVKVAEKYGYSVRF 188 (219)
T ss_dssp HHHHHHHHHTEEEEE
T ss_pred HHHHHHHHCCcEEEE
Confidence 888999997643
No 68
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=99.07 E-value=2.7e-10 Score=94.06 Aligned_cols=114 Identities=14% Similarity=0.051 Sum_probs=77.1
Q ss_pred CCCcceEEEeCCCCCC------------------------------------Ccccccc-ccCC-------cceeeechh
Q 045543 106 FEKIKQLVDVGGGCGK------------------------------------CGWKMFQ-KILN-------GDAILMKLI 141 (239)
Q Consensus 106 ~~~~~~vlDvGGG~G~------------------------------------~~gD~~~-~~p~-------~D~~~l~~v 141 (239)
..+..+|||||||+|. +.+|+.+ +.+. .|+|++..+
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~ 133 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTG 133 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESS
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcch
Confidence 4566899999999998 3455554 2211 389999999
Q ss_pred hhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhh-------hhhhhHHHhhccCCccccChhhccHHHH
Q 045543 142 LRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATRE-------ASSIDIIMLMQLSGEKERTKQEYYGMAL 214 (239)
Q Consensus 142 lH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~-------~~~~dl~ml~~~~~g~~rt~~e~~~~~l 214 (239)
+|++++++...+|++++++|+|||+++|.+...++.. ..... .....-.+-... ....++.+++ .++
T Consensus 134 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~ 207 (245)
T 3ggd_A 134 FHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCID---FFNSLLEKYGQLPYELLLVMEHGI-RPGIFTAEDI--ELY 207 (245)
T ss_dssp STTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHH---HHHHHHHHHSSCCHHHHHHHTTTC-CCCCCCHHHH--HHH
T ss_pred hhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccH---HHHHHHhCCCCCchhhhhccccCC-CCCccCHHHH--HHH
Confidence 9999988889999999999999999999998644310 00000 000000000001 1123688999 999
Q ss_pred HhhCCCceeeEEE
Q 045543 215 TAKNGFKGVNYES 227 (239)
Q Consensus 215 l~~aGf~~~~~~~ 227 (239)
+ +||++++...
T Consensus 208 ~--aGf~~~~~~~ 218 (245)
T 3ggd_A 208 F--PDFEILSQGE 218 (245)
T ss_dssp C--TTEEEEEEEC
T ss_pred h--CCCEEEeccc
Confidence 9 9999987644
No 69
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=99.06 E-value=9e-11 Score=103.66 Aligned_cols=159 Identities=11% Similarity=0.060 Sum_probs=100.8
Q ss_pred ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CCCCCCeEecChhhHHHHh-cCCCcc-ccc---
Q 045543 2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AGDDRRLQRLAPVAKYVLH-YGIGDY-EHA--- 74 (239)
Q Consensus 2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~~~~~~y~~t~~s~~l~~-~g~~~~-~~l--- 74 (239)
++|..| . +|.|++|||+++|+ +++.+.++|+.|++. .+..++ |++|+.+..++. .+.... ++.
T Consensus 47 ~ll~~L-~----~~~t~~eLa~~~g~----~~~~v~~~L~~l~~~gll~~~~~-~~lt~~~~~~l~~~~~~~~~~~~~~~ 116 (373)
T 2qm3_A 47 NVLSAV-L----ASDDIWRIVDLSEE----PLPLVVAILESLNELGYVTFEDG-VKLTEKGEELVAEYGIGKRYDFTCPH 116 (373)
T ss_dssp HHHHHH-H----HCSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECSSS-SEECHHHHHHHHHHTCCCCCC-----
T ss_pred HHHHHh-c----CCCCHHHHHHHhCC----ChHHHHHHHHHHhhCCcEEECCC-EEECHHHHHHHHhcCccccccccchh
Confidence 678888 5 59999999999999 999999999999986 333335 999998876652 221110 000
Q ss_pred -c-------cCchHHHHHHHHHHhcc-------c--ccH----HHHHhhcc-CCCCcceEEEeCCCCCC-----------
Q 045543 75 -G-------LDSRFNEVLNTAMLSHN-------S--IVM----NRILDYYK-GFEKIKQLVDVGGGCGK----------- 121 (239)
Q Consensus 75 -~-------~~~~~~~~f~~~m~~~~-------~--~~~----~~~~~~~~-~~~~~~~vlDvGGG~G~----------- 121 (239)
. ......+.+........ . ... ..++.... ...+..+|||+| |+|.
T Consensus 117 ~~g~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~VLDlG-G~G~~~~~la~~~~~ 195 (373)
T 2qm3_A 117 CQGKTVDLQAFADLLEQFREIVKDRPEPLHEFDQAYVTPETTVARVILMHTRGDLENKDIFVLG-DDDLTSIALMLSGLP 195 (373)
T ss_dssp -------CGGGHHHHHHHHHHHTTCCCCCGGGTCCCBCHHHHHHHHHHHHHTTCSTTCEEEEES-CTTCHHHHHHHHTCC
T ss_pred hcCCCcchhhhHHHHHHHHHHHhcCCccchhcCCeecCHHHHHHHHHHHhhcCCCCCCEEEEEC-CCCHHHHHHHHhCCC
Confidence 0 00111122222222211 1 011 11211111 022458999999 9998
Q ss_pred ------------------------------CccccccccCC----c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCce
Q 045543 122 ------------------------------CGWKMFQKILN----G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGK 166 (239)
Q Consensus 122 ------------------------------~~gD~~~~~p~----~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~ 166 (239)
+.+|+++.+|. . |+|++...+|... ...+|++++++|+|||+
T Consensus 196 ~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~~~~~---~~~~l~~~~~~LkpgG~ 272 (373)
T 2qm3_A 196 KRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPETLEA---IRAFVGRGIATLKGPRC 272 (373)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCSSHHH---HHHHHHHHHHTBCSTTC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCCchHH---HHHHHHHHHHHcccCCe
Confidence 46777764552 3 9999987776542 48999999999999998
Q ss_pred EEEEeeec
Q 045543 167 IIIIDSTT 174 (239)
Q Consensus 167 lli~d~~~ 174 (239)
+++++...
T Consensus 273 ~~~~~~~~ 280 (373)
T 2qm3_A 273 AGYFGITR 280 (373)
T ss_dssp EEEEEECT
T ss_pred EEEEEEec
Confidence 87777653
No 70
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=99.06 E-value=1.1e-10 Score=104.31 Aligned_cols=120 Identities=14% Similarity=0.114 Sum_probs=83.2
Q ss_pred cHHHHHhhccCCCCcceEEEeCCCCCC-------------------------------Ccccccc-------ccC-C-cc
Q 045543 95 VMNRILDYYKGFEKIKQLVDVGGGCGK-------------------------------CGWKMFQ-------KIL-N-GD 134 (239)
Q Consensus 95 ~~~~~~~~~~~~~~~~~vlDvGGG~G~-------------------------------~~gD~~~-------~~p-~-~D 134 (239)
.+..+++.++ ..+..+|||||||+|. ...++|. +++ . .|
T Consensus 95 ~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~fD 173 (416)
T 4e2x_A 95 LARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGPAN 173 (416)
T ss_dssp HHHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHCCEE
T ss_pred HHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccCCCCEE
Confidence 3456677776 7778899999999999 0112221 122 2 39
Q ss_pred eeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHH
Q 045543 135 AILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMAL 214 (239)
Q Consensus 135 ~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~l 214 (239)
+|++.++||+++|. ..+|+++++.|+|||++++........ .. ...++ ... ......+|.+++ .++
T Consensus 174 ~I~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~-----~~--~~~~~--~~~-~~~~~~~s~~~l--~~l 239 (416)
T 4e2x_A 174 VIYAANTLCHIPYV--QSVLEGVDALLAPDGVFVFEDPYLGDI-----VA--KTSFD--QIF-DEHFFLFSATSV--QGM 239 (416)
T ss_dssp EEEEESCGGGCTTH--HHHHHHHHHHEEEEEEEEEEEECHHHH-----HH--HTCGG--GCS-TTCCEECCHHHH--HHH
T ss_pred EEEECChHHhcCCH--HHHHHHHHHHcCCCeEEEEEeCChHHh-----hh--hcchh--hhh-hhhhhcCCHHHH--HHH
Confidence 99999999999865 689999999999999999865432210 00 00011 000 123455789999 999
Q ss_pred HhhCCCceeeEEEcC
Q 045543 215 TAKNGFKGVNYESFV 229 (239)
Q Consensus 215 l~~aGf~~~~~~~~~ 229 (239)
++++||+++++...+
T Consensus 240 l~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 240 AQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHTTEEEEEEEEEC
T ss_pred HHHcCCEEEEEEEcc
Confidence 999999999988765
No 71
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=99.06 E-value=1.3e-10 Score=93.34 Aligned_cols=117 Identities=8% Similarity=-0.106 Sum_probs=78.9
Q ss_pred CCCcceEEEeCCCCCC---------------------------------------Ccccccc-ccCC-c-ceeeechhhh
Q 045543 106 FEKIKQLVDVGGGCGK---------------------------------------CGWKMFQ-KILN-G-DAILMKLILR 143 (239)
Q Consensus 106 ~~~~~~vlDvGGG~G~---------------------------------------~~gD~~~-~~p~-~-D~~~l~~vlH 143 (239)
..+..+|||||||+|. +.+|+.+ +++. . |+|++.+++|
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 100 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIF 100 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGG
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHH
Confidence 4456899999999998 2345544 4443 3 9999999999
Q ss_pred cCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhh-hhhhhHHHhhccCCccccChhhccHHHHHhhCCCce
Q 045543 144 NWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATRE-ASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKG 222 (239)
Q Consensus 144 ~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~-~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~ 222 (239)
+++.++..++|+++++.|+|||++++.+...++.......... ..+..+...... .+..++.+|+ .++++++||..
T Consensus 101 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~--~~~~~~~g~~~ 177 (209)
T 2p8j_A 101 HMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKV-IHSYVSLEEA--DKYFKDMKVLF 177 (209)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCE-EEEEECHHHH--HHTTTTSEEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCce-eEEecCHHHH--HHHHhhcCcee
Confidence 9988888999999999999999999998875543211000000 000000000000 1245688899 99999999877
Q ss_pred eeE
Q 045543 223 VNY 225 (239)
Q Consensus 223 ~~~ 225 (239)
.+.
T Consensus 178 ~~~ 180 (209)
T 2p8j_A 178 KED 180 (209)
T ss_dssp EEE
T ss_pred eee
Confidence 654
No 72
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=99.05 E-value=4.6e-10 Score=99.36 Aligned_cols=83 Identities=17% Similarity=0.204 Sum_probs=62.2
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHH
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMA 213 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ 213 (239)
|+|++..++|+++|. ..+|+++++.|+|||+|++.+...+..... . ...+...+... .+..++.++| .+
T Consensus 168 D~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~----~--~~~~~~~~~~~-~~~~~~~~~~--~~ 236 (383)
T 4fsd_A 168 DIVISNCVCNLSTNK--LALFKEIHRVLRDGGELYFSDVYADRRLSE----A--AQQDPILYGEC-LGGALYLEDF--RR 236 (383)
T ss_dssp EEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEESSCCCH----H--HHHCHHHHHTT-CTTCCBHHHH--HH
T ss_pred EEEEEccchhcCCCH--HHHHHHHHHHcCCCCEEEEEEeccccccCH----h--HhhhHHHhhcc-cccCCCHHHH--HH
Confidence 999999999999875 599999999999999999998776543211 1 11122222222 4566788999 99
Q ss_pred HHhhCCCceeeEEE
Q 045543 214 LTAKNGFKGVNYES 227 (239)
Q Consensus 214 ll~~aGf~~~~~~~ 227 (239)
+|+++||+.+++..
T Consensus 237 ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 237 LVAEAGFRDVRLVS 250 (383)
T ss_dssp HHHHTTCCCEEEEE
T ss_pred HHHHCCCceEEEEe
Confidence 99999999886644
No 73
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=99.04 E-value=3.2e-10 Score=92.00 Aligned_cols=81 Identities=12% Similarity=0.078 Sum_probs=53.1
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHH-
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGM- 212 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~- 212 (239)
|+|++.+++|++++++...+|+++++.|+|||.+++........ .+.. +....+........++.+++ .
T Consensus 104 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~l--~~ 173 (217)
T 3jwh_A 104 DAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNV-------KFAN-LPAGKLRHKDHRFEWTRSQF--QN 173 (217)
T ss_dssp SEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHH-------HTC------------CCSCBCHHHH--HH
T ss_pred CEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccch-------hhcc-cccccccccccccccCHHHH--HH
Confidence 99999999999999988999999999999999776654421000 0000 00000000112334688888 7
Q ss_pred ---HHHhhCCCceee
Q 045543 213 ---ALTAKNGFKGVN 224 (239)
Q Consensus 213 ---~ll~~aGf~~~~ 224 (239)
++++++||++.-
T Consensus 174 ~~~~~~~~~Gf~v~~ 188 (217)
T 3jwh_A 174 WANKITERFAYNVQF 188 (217)
T ss_dssp HHHHHHHHSSEEEEE
T ss_pred HHHHHHHHcCceEEE
Confidence 889999998643
No 74
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=99.03 E-value=6.5e-10 Score=89.75 Aligned_cols=74 Identities=4% Similarity=-0.107 Sum_probs=54.6
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHH
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMA 213 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ 213 (239)
|+|+.+.++|++++++..++++++++.|+|||+++++....+..... . .....+.+|+ .+
T Consensus 103 D~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~-----------------~-~~~~~~~~el--~~ 162 (203)
T 1pjz_A 103 AAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLE-----------------G-PPFSVPQTWL--HR 162 (203)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSS-----------------S-CCCCCCHHHH--HH
T ss_pred EEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccC-----------------C-CCCCCCHHHH--HH
Confidence 99999999999998888899999999999999955554333211000 0 0112578899 99
Q ss_pred HHhhCCCceeeEEEc
Q 045543 214 LTAKNGFKGVNYESF 228 (239)
Q Consensus 214 ll~~aGf~~~~~~~~ 228 (239)
++++ ||++..+...
T Consensus 163 ~~~~-gf~i~~~~~~ 176 (203)
T 1pjz_A 163 VMSG-NWEVTKVGGQ 176 (203)
T ss_dssp TSCS-SEEEEEEEES
T ss_pred HhcC-CcEEEEeccc
Confidence 9998 9998777654
No 75
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=99.02 E-value=1.9e-09 Score=90.31 Aligned_cols=127 Identities=9% Similarity=0.064 Sum_probs=83.1
Q ss_pred HHHHhhccCCCCcceEEEeCCCCCC-------------------C------------------------------ccc-c
Q 045543 97 NRILDYYKGFEKIKQLVDVGGGCGK-------------------C------------------------------GWK-M 126 (239)
Q Consensus 97 ~~~~~~~~~~~~~~~vlDvGGG~G~-------------------~------------------------------~gD-~ 126 (239)
..+++.++ +.+..+|||||||+|. . .+| +
T Consensus 33 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 111 (275)
T 3bkx_A 33 LAIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNL 111 (275)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCT
T ss_pred HHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 45667776 7788899999999998 1 122 3
Q ss_pred cc---ccCC-c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccC--
Q 045543 127 FQ---KILN-G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLS-- 199 (239)
Q Consensus 127 ~~---~~p~-~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~-- 199 (239)
+. +++. . |+|++.+++|++++.. .+++.++..++|||++++.+...+..................+.....
T Consensus 112 ~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (275)
T 3bkx_A 112 SDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSD 189 (275)
T ss_dssp TTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCT
T ss_pred hhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccccc
Confidence 22 2233 3 9999999999999875 478888888888999999998776542211000000011111100000
Q ss_pred -C--ccccChhhccHHHHHhhCCCceeeEEEc
Q 045543 200 -G--EKERTKQEYYGMALTAKNGFKGVNYESF 228 (239)
Q Consensus 200 -~--g~~rt~~e~~~~~ll~~aGf~~~~~~~~ 228 (239)
. ...+|.+++ .++++++||+++++..+
T Consensus 190 ~~~~~~~~s~~~l--~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 190 VANIRTLITPDTL--AQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp TCSCCCCCCHHHH--HHHHHHHTCEEEECCCB
T ss_pred cccccccCCHHHH--HHHHHHCCCeeEEEEEe
Confidence 1 135689999 99999999999887665
No 76
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=99.01 E-value=7.1e-10 Score=92.00 Aligned_cols=117 Identities=12% Similarity=0.141 Sum_probs=76.6
Q ss_pred HHHHhhccCCCCcceEEEeCCCCCC------------------------------------Ccccccc-ccCC-c-ceee
Q 045543 97 NRILDYYKGFEKIKQLVDVGGGCGK------------------------------------CGWKMFQ-KILN-G-DAIL 137 (239)
Q Consensus 97 ~~~~~~~~~~~~~~~vlDvGGG~G~------------------------------------~~gD~~~-~~p~-~-D~~~ 137 (239)
..+++.++ ..+..+|||||||+|. +.+|+.+ + +. . |+|+
T Consensus 23 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~ 100 (259)
T 2p35_A 23 RDLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLY 100 (259)
T ss_dssp HHHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEE
T ss_pred HHHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEE
Confidence 45666666 6677899999999998 3345544 3 33 3 9999
Q ss_pred echhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhc-c-----CCccccChhhccH
Q 045543 138 MKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQ-L-----SGEKERTKQEYYG 211 (239)
Q Consensus 138 l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~-~-----~~g~~rt~~e~~~ 211 (239)
+.+++|+++|. ..+|+++++.|+|||++++....... .+.............+.. . .....++.++|
T Consensus 101 ~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 173 (259)
T 2p35_A 101 ANAVFQWVPDH--LAVLSQLMDQLESGGVLAVQMPDNLQ---EPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDY-- 173 (259)
T ss_dssp EESCGGGSTTH--HHHHHHHGGGEEEEEEEEEEEECCTT---SHHHHHHHHHHHHSTTGGGC-------CCCCCHHHH--
T ss_pred EeCchhhCCCH--HHHHHHHHHhcCCCeEEEEEeCCCCC---cHHHHHHHHHhcCcchHHHhccccccccCCCCHHHH--
Confidence 99999999764 58999999999999999998753211 110000000000000000 0 02245688999
Q ss_pred HHHHhhCCCce
Q 045543 212 MALTAKNGFKG 222 (239)
Q Consensus 212 ~~ll~~aGf~~ 222 (239)
.++|+++||++
T Consensus 174 ~~~l~~aGf~v 184 (259)
T 2p35_A 174 FNALSPKSSRV 184 (259)
T ss_dssp HHHHGGGEEEE
T ss_pred HHHHHhcCCce
Confidence 99999999974
No 77
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=98.99 E-value=1.4e-09 Score=91.98 Aligned_cols=109 Identities=17% Similarity=0.214 Sum_probs=79.2
Q ss_pred HHHHhhccCCCCcceEEEeCCCCCC--------------------------------------Ccccccc-ccCCc-cee
Q 045543 97 NRILDYYKGFEKIKQLVDVGGGCGK--------------------------------------CGWKMFQ-KILNG-DAI 136 (239)
Q Consensus 97 ~~~~~~~~~~~~~~~vlDvGGG~G~--------------------------------------~~gD~~~-~~p~~-D~~ 136 (239)
..+++.++ ..+..+|||||||+|. +.+|+.+ +.+.. |+|
T Consensus 110 ~~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~i 188 (286)
T 3m70_A 110 GDVVDAAK-IISPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDFI 188 (286)
T ss_dssp HHHHHHHH-HSCSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEEE
T ss_pred HHHHHHhh-ccCCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccEE
Confidence 45666666 5577899999999998 3456655 23333 999
Q ss_pred eechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHh
Q 045543 137 LMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTA 216 (239)
Q Consensus 137 ~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~ 216 (239)
++..++|++++++...+|+++++.|+|||+++|+.....+....+ .......+.+++ .++++
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~----------------~~~~~~~~~~~l--~~~~~ 250 (286)
T 3m70_A 189 VSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCP----------------LPFSFTFAENEL--KEYYK 250 (286)
T ss_dssp EECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCS----------------SCCSCCBCTTHH--HHHTT
T ss_pred EEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCC----------------CCccccCCHHHH--HHHhc
Confidence 999999999999999999999999999999888776554432111 001233567777 88886
Q ss_pred hCCCceeeEE
Q 045543 217 KNGFKGVNYE 226 (239)
Q Consensus 217 ~aGf~~~~~~ 226 (239)
. |+++...
T Consensus 251 ~--~~~~~~~ 258 (286)
T 3m70_A 251 D--WEFLEYN 258 (286)
T ss_dssp T--SEEEEEE
T ss_pred C--CEEEEEE
Confidence 5 8877653
No 78
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=98.98 E-value=1.1e-09 Score=93.10 Aligned_cols=79 Identities=19% Similarity=0.084 Sum_probs=55.6
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCC---ccccChhhcc
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSG---EKERTKQEYY 210 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~---g~~rt~~e~~ 210 (239)
|+|++.++||+++|.. +.|+++++.|+|||+++|.+... + ..+. ..+.- .+...+. ...++.++|
T Consensus 137 D~V~~~~~l~~~~d~~--~~l~~~~r~LkpgG~l~i~~~~~-~---~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~- 204 (292)
T 2aot_A 137 DFIHMIQMLYYVKDIP--ATLKFFHSLLGTNAKMLIIVVSG-S---SGWD----KLWKK-YGSRFPQDDLCQYITSDDL- 204 (292)
T ss_dssp EEEEEESCGGGCSCHH--HHHHHHHHTEEEEEEEEEEEECT-T---SHHH----HHHHH-HGGGSCCCTTCCCCCHHHH-
T ss_pred eEEEEeeeeeecCCHH--HHHHHHHHHcCCCcEEEEEEecC-C---ccHH----HHHHH-HHHhccCCCcccCCCHHHH-
Confidence 9999999999999864 78999999999999999986431 1 1111 11110 1111111 234688999
Q ss_pred HHHHHhhCCCceeeE
Q 045543 211 GMALTAKNGFKGVNY 225 (239)
Q Consensus 211 ~~~ll~~aGf~~~~~ 225 (239)
.++|+++||++++.
T Consensus 205 -~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 205 -TQMLDNLGLKYECY 218 (292)
T ss_dssp -HHHHHHHTCCEEEE
T ss_pred -HHHHHHCCCceEEE
Confidence 99999999998764
No 79
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=98.95 E-value=4.1e-10 Score=95.43 Aligned_cols=75 Identities=19% Similarity=0.218 Sum_probs=58.4
Q ss_pred HHHHhhccCCCCcceEEEeCCCCCC-------------------------------------------Ccccccc-c---
Q 045543 97 NRILDYYKGFEKIKQLVDVGGGCGK-------------------------------------------CGWKMFQ-K--- 129 (239)
Q Consensus 97 ~~~~~~~~~~~~~~~vlDvGGG~G~-------------------------------------------~~gD~~~-~--- 129 (239)
..+.+.++ ..+..+|||||||+|. ..+|+.+ +
T Consensus 47 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 125 (293)
T 3thr_A 47 AWLLGLLR-QHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV 125 (293)
T ss_dssp HHHHHHHH-HTTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS
T ss_pred HHHHHHhc-ccCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcccc
Confidence 34444444 4567899999999999 1245544 3
Q ss_pred cCC-c-ceeeec-hhhhcCCh-----hHHHHHHHHHHhhCCCCceEEEEee
Q 045543 130 ILN-G-DAILMK-LILRNWDD-----EHCLSLLKNCYEAIPGNGKIIIIDS 172 (239)
Q Consensus 130 ~p~-~-D~~~l~-~vlH~~~d-----~~~~~iL~~~~~aL~pgg~lli~d~ 172 (239)
++. . |+|++. +++|++++ ++..++|+++++.|+|||++++...
T Consensus 126 ~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 126 PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp CCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 343 3 999998 99999998 7788999999999999999998754
No 80
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=98.95 E-value=1.5e-09 Score=91.07 Aligned_cols=91 Identities=12% Similarity=0.004 Sum_probs=62.8
Q ss_pred cceeeechhhhcC-C-hhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhcc
Q 045543 133 GDAILMKLILRNW-D-DEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYY 210 (239)
Q Consensus 133 ~D~~~l~~vlH~~-~-d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~ 210 (239)
.|+|+++.+||+. + .++-.++|+++++.|||||+|++.+...... + ...-. .. .....+.+++
T Consensus 157 fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~--------~--~~g~~---~~-~~~~~~~~~l- 221 (263)
T 2a14_A 157 ADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS--------Y--MVGKR---EF-SCVALEKGEV- 221 (263)
T ss_dssp EEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE--------E--EETTE---EE-ECCCCCHHHH-
T ss_pred CCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCcc--------c--eeCCe---Ee-eccccCHHHH-
Confidence 3999999999974 2 3566799999999999999999987542110 0 00000 00 1123588999
Q ss_pred HHHHHhhCCCceeeEEEcC----------CceeEEEEEC
Q 045543 211 GMALTAKNGFKGVNYESFV----------CNFYIMEFIK 239 (239)
Q Consensus 211 ~~~ll~~aGf~~~~~~~~~----------~~~~vie~~k 239 (239)
.++|+++||+++++...+ ....++.|+|
T Consensus 222 -~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~~~a~K 259 (263)
T 2a14_A 222 -EQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARK 259 (263)
T ss_dssp -HHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEE
T ss_pred -HHHHHHCCCEEEEEeecccccccccCCCCceEEEEEEe
Confidence 999999999998886542 1345666765
No 81
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=98.90 E-value=1.5e-09 Score=91.85 Aligned_cols=121 Identities=15% Similarity=0.105 Sum_probs=78.1
Q ss_pred CCCcceEEEeCCCCCC-----------------------------------------Ccccccc-cc-CC-c-ceeeech
Q 045543 106 FEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQ-KI-LN-G-DAILMKL 140 (239)
Q Consensus 106 ~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~-~~-p~-~-D~~~l~~ 140 (239)
..+..+|||||||+|. +.+|+.+ ++ +. . |+|++..
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 3566899999999997 2345555 44 33 3 9999999
Q ss_pred hhhc--CChhHHHHHHHHHHhhCCCCceEEEEeeecCCC--------CCCChh----------hh-hhhhhhHHHhhcc-
Q 045543 141 ILRN--WDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVI--------PEATPA----------TR-EASSIDIIMLMQL- 198 (239)
Q Consensus 141 vlH~--~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~--------~~~~~~----------~~-~~~~~dl~ml~~~- 198 (239)
++|+ .+.++...+|+++++.|+|||++++........ -..+.. .. ........+....
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~ 221 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVN 221 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCS
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhhc
Confidence 9998 677788999999999999999999976532100 000000 00 0000000000000
Q ss_pred -CCccccChhhccHHHHHhhCCCceeeEEEc
Q 045543 199 -SGEKERTKQEYYGMALTAKNGFKGVNYESF 228 (239)
Q Consensus 199 -~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~ 228 (239)
.....++.+++ .++|+++||+++++...
T Consensus 222 ~~~~~~~~~~~l--~~ll~~aGf~~v~~~~~ 250 (298)
T 1ri5_A 222 NCIEYFVDFTRM--VDGFKRLGLSLVERKGF 250 (298)
T ss_dssp SEEEECCCHHHH--HHHHHTTTEEEEEEEEH
T ss_pred CCcccccCHHHH--HHHHHHcCCEEEEecCH
Confidence 01244588999 99999999999988764
No 82
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=98.89 E-value=1.9e-08 Score=83.16 Aligned_cols=73 Identities=21% Similarity=0.289 Sum_probs=55.2
Q ss_pred HHHHhhccCCCCcceEEEeCCCCCC--------------------------------------Ccccccc-ccCCc-cee
Q 045543 97 NRILDYYKGFEKIKQLVDVGGGCGK--------------------------------------CGWKMFQ-KILNG-DAI 136 (239)
Q Consensus 97 ~~~~~~~~~~~~~~~vlDvGGG~G~--------------------------------------~~gD~~~-~~p~~-D~~ 136 (239)
..++.... ..+..+|||||||+|. +.+|+.+ +.+.. |+|
T Consensus 31 ~~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v 109 (252)
T 1wzn_A 31 EEIFKEDA-KREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAV 109 (252)
T ss_dssp HHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEE
T ss_pred HHHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccEE
Confidence 34444444 4566899999999998 3456655 34444 999
Q ss_pred eec-hhhhcCChhHHHHHHHHHHhhCCCCceEEEE
Q 045543 137 LMK-LILRNWDDEHCLSLLKNCYEAIPGNGKIIII 170 (239)
Q Consensus 137 ~l~-~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~ 170 (239)
++. ..+|.+++++...+|+++++.|+|||++++.
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~ 144 (252)
T 1wzn_A 110 TMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD 144 (252)
T ss_dssp EECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 886 5677788888899999999999999998763
No 83
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=98.87 E-value=2.5e-09 Score=90.61 Aligned_cols=79 Identities=13% Similarity=0.195 Sum_probs=56.9
Q ss_pred ceeeechhhhcCChh--HHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccH
Q 045543 134 DAILMKLILRNWDDE--HCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYG 211 (239)
Q Consensus 134 D~~~l~~vlH~~~d~--~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~ 211 (239)
|+|++..+||+.+++ +-.++|+++++.|+|||+|++.+...... +.. -+. .. ....++.++|
T Consensus 176 D~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~--------~~~-~~~----~~-~~~~~~~~~l-- 239 (289)
T 2g72_A 176 DALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESW--------YLA-GEA----RL-TVVPVSEEEV-- 239 (289)
T ss_dssp EEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCE--------EEE-TTE----EE-ECCCCCHHHH--
T ss_pred CEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcce--------EEc-CCe----ee-eeccCCHHHH--
Confidence 999999999986543 66799999999999999999986432110 000 000 00 1234589999
Q ss_pred HHHHhhCCCceeeEEEc
Q 045543 212 MALTAKNGFKGVNYESF 228 (239)
Q Consensus 212 ~~ll~~aGf~~~~~~~~ 228 (239)
.++|+++||+++++...
T Consensus 240 ~~~l~~aGf~~~~~~~~ 256 (289)
T 2g72_A 240 REALVRSGYKVRDLRTY 256 (289)
T ss_dssp HHHHHHTTEEEEEEEEE
T ss_pred HHHHHHcCCeEEEeeEe
Confidence 99999999999887653
No 84
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=98.86 E-value=1.2e-08 Score=84.79 Aligned_cols=90 Identities=12% Similarity=0.095 Sum_probs=62.0
Q ss_pred ceeeechhhhcCCh--hHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccH
Q 045543 134 DAILMKLILRNWDD--EHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYG 211 (239)
Q Consensus 134 D~~~l~~vlH~~~d--~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~ 211 (239)
|+|++..+||..++ ++...+|+++++.|+|||+|++.+...... +.. -+. .. .....+.+++
T Consensus 159 D~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~--------~~~-~~~----~~-~~~~~~~~~~-- 222 (265)
T 2i62_A 159 DCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSY--------YMI-GEQ----KF-SSLPLGWETV-- 222 (265)
T ss_dssp EEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE--------EEE-TTE----EE-ECCCCCHHHH--
T ss_pred cEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCce--------EEc-CCc----cc-cccccCHHHH--
Confidence 99999999995543 366799999999999999999988432210 000 000 00 1123577899
Q ss_pred HHHHhhCCCceeeEEEcCC----------ceeEEEEEC
Q 045543 212 MALTAKNGFKGVNYESFVC----------NFYIMEFIK 239 (239)
Q Consensus 212 ~~ll~~aGf~~~~~~~~~~----------~~~vie~~k 239 (239)
.++|+++||+++++...+. ...++.++|
T Consensus 223 ~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K 260 (265)
T 2i62_A 223 RDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRK 260 (265)
T ss_dssp HHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEEC
T ss_pred HHHHHHCCCEEEEEEEecccCCccccccceEEEEEecc
Confidence 9999999999998876531 344666765
No 85
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=98.85 E-value=1.2e-08 Score=81.52 Aligned_cols=98 Identities=8% Similarity=0.079 Sum_probs=69.6
Q ss_pred eEEEeCCCCCC--------------------------------------Ccccccc-ccCC-c-ceeeechhhhcCChhH
Q 045543 111 QLVDVGGGCGK--------------------------------------CGWKMFQ-KILN-G-DAILMKLILRNWDDEH 149 (239)
Q Consensus 111 ~vlDvGGG~G~--------------------------------------~~gD~~~-~~p~-~-D~~~l~~vlH~~~d~~ 149 (239)
+|||||||+|. +.+|+.+ +++. . |+|++. +++++.++
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~~~~~~ 109 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCHLPSSL 109 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCCCCHHH
T ss_pred CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhcCCHHH
Confidence 99999999998 3456655 4443 3 999984 34567778
Q ss_pred HHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEE
Q 045543 150 CLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYES 227 (239)
Q Consensus 150 ~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~ 227 (239)
...+|+++++.|+|||++++.+....... +..... ......++.+++ .++|+ ||+++++..
T Consensus 110 ~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-------~~~~~~------~~~~~~~~~~~l--~~~l~--Gf~v~~~~~ 170 (202)
T 2kw5_A 110 RQQLYPKVYQGLKPGGVFILEGFAPEQLQ-------YNTGGP------KDLDLLPKLETL--QSELP--SLNWLIANN 170 (202)
T ss_dssp HHHHHHHHHTTCCSSEEEEEEEECTTTGG-------GTSCCS------SSGGGCCCHHHH--HHHCS--SSCEEEEEE
T ss_pred HHHHHHHHHHhcCCCcEEEEEEecccccc-------CCCCCC------CcceeecCHHHH--HHHhc--CceEEEEEE
Confidence 89999999999999999999876533210 000000 001235799999 99999 999988754
No 86
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=98.83 E-value=1.5e-08 Score=79.37 Aligned_cols=91 Identities=12% Similarity=0.083 Sum_probs=68.9
Q ss_pred CCCcceEEEeCCCCCC---------------------Ccccccc-cc---CC-c-ceeeechhhhcC-ChhHHHHHHHHH
Q 045543 106 FEKIKQLVDVGGGCGK---------------------CGWKMFQ-KI---LN-G-DAILMKLILRNW-DDEHCLSLLKNC 157 (239)
Q Consensus 106 ~~~~~~vlDvGGG~G~---------------------~~gD~~~-~~---p~-~-D~~~l~~vlH~~-~d~~~~~iL~~~ 157 (239)
..+..+|||||||... +.+|+.+ +. +. . |+|++.+++|++ +|. ..+|+++
T Consensus 10 ~~~g~~vL~~~~g~v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~--~~~l~~~ 87 (176)
T 2ld4_A 10 ISAGQFVAVVWDKSSPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGSTTLHS--AEILAEI 87 (176)
T ss_dssp CCTTSEEEEEECTTSCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCCCCCC--HHHHHHH
T ss_pred CCCCCEEEEecCCceeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChhhhcccCH--HHHHHHH
Confidence 5677899999999765 3455544 33 43 3 999999999998 665 6899999
Q ss_pred HhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCC
Q 045543 158 YEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGF 220 (239)
Q Consensus 158 ~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf 220 (239)
++.|+|||++++.+........ ....++.++| .++|+++||
T Consensus 88 ~r~LkpgG~l~~~~~~~~~~~~--------------------~~~~~~~~~~--~~~l~~aGf 128 (176)
T 2ld4_A 88 ARILRPGGCLFLKEPVETAVDN--------------------NSKVKTASKL--CSALTLSGL 128 (176)
T ss_dssp HHHEEEEEEEEEEEEEESSSCS--------------------SSSSCCHHHH--HHHHHHTTC
T ss_pred HHHCCCCEEEEEEccccccccc--------------------ccccCCHHHH--HHHHHHCCC
Confidence 9999999999997654332110 1123688999 999999999
No 87
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=98.82 E-value=5.1e-09 Score=84.08 Aligned_cols=97 Identities=16% Similarity=0.106 Sum_probs=74.5
Q ss_pred CCcceEEEeCCCCCC----------------------------------------CccccccccCCc-ceeeechhhhcC
Q 045543 107 EKIKQLVDVGGGCGK----------------------------------------CGWKMFQKILNG-DAILMKLILRNW 145 (239)
Q Consensus 107 ~~~~~vlDvGGG~G~----------------------------------------~~gD~~~~~p~~-D~~~l~~vlH~~ 145 (239)
.+..+|||||||+|. +.+|+.+..+.. |+|++...+|+
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~- 137 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI- 137 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH-
T ss_pred cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH-
Confidence 456899999999998 334554433334 99999888765
Q ss_pred ChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeE
Q 045543 146 DDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNY 225 (239)
Q Consensus 146 ~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~ 225 (239)
...+++++++.|+|||++++.+.... +.+++ .++++++||+++++
T Consensus 138 ----~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~--~~~~~~~Gf~~~~~ 182 (205)
T 3grz_A 138 ----LLDLIPQLDSHLNEDGQVIFSGIDYL-----------------------------QLPKI--EQALAENSFQIDLK 182 (205)
T ss_dssp ----HHHHGGGSGGGEEEEEEEEEEEEEGG-----------------------------GHHHH--HHHHHHTTEEEEEE
T ss_pred ----HHHHHHHHHHhcCCCCEEEEEecCcc-----------------------------cHHHH--HHHHHHcCCceEEe
Confidence 36889999999999999999654321 34566 88899999999998
Q ss_pred EEcCCceeEEEEEC
Q 045543 226 ESFVCNFYIMEFIK 239 (239)
Q Consensus 226 ~~~~~~~~vie~~k 239 (239)
.......+++.-+|
T Consensus 183 ~~~~~w~~~~~~~~ 196 (205)
T 3grz_A 183 MRAGRWIGLAISRK 196 (205)
T ss_dssp EEETTEEEEEEEEC
T ss_pred eccCCEEEEEEecc
Confidence 88877788877654
No 88
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=98.80 E-value=2.8e-08 Score=83.95 Aligned_cols=80 Identities=16% Similarity=0.189 Sum_probs=56.9
Q ss_pred eeeechhhhcCChhH-HHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHH
Q 045543 135 AILMKLILRNWDDEH-CLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMA 213 (239)
Q Consensus 135 ~~~l~~vlH~~~d~~-~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ 213 (239)
++++..+||..+|++ ...+|++++++|+|||+|++.+...+..+. ......+..-..-. ....||.+|+ .+
T Consensus 163 av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~-----~~~~~~~~~~~~g~-p~~~rs~~ei--~~ 234 (277)
T 3giw_A 163 ALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQ-----EVGRVAREYAARNM-PMRLRTHAEA--EE 234 (277)
T ss_dssp EEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHH-----HHHHHHHHHHHTTC-CCCCCCHHHH--HH
T ss_pred hHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHH-----HHHHHHHHHHhcCC-CCccCCHHHH--HH
Confidence 688999999999876 579999999999999999998876542211 11122222211111 3466899999 99
Q ss_pred HHhhCCCceee
Q 045543 214 LTAKNGFKGVN 224 (239)
Q Consensus 214 ll~~aGf~~~~ 224 (239)
+|. ||++++
T Consensus 235 ~f~--Glelve 243 (277)
T 3giw_A 235 FFE--GLELVE 243 (277)
T ss_dssp TTT--TSEECT
T ss_pred HhC--CCcccC
Confidence 995 999765
No 89
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=98.79 E-value=2.1e-09 Score=91.60 Aligned_cols=85 Identities=12% Similarity=0.194 Sum_probs=55.0
Q ss_pred ceeeechhhhc----CChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhc
Q 045543 134 DAILMKLILRN----WDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEY 209 (239)
Q Consensus 134 D~~~l~~vlH~----~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~ 209 (239)
|+|++..++|. |+++...++|+++++.|+|||+|++............ ......... + .......+++
T Consensus 179 D~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~~~~~~y~~~~--~~~~~~~~~-----~-~~~~~~p~~~ 250 (292)
T 3g07_A 179 DVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRK--TLTETIYKN-----Y-YRIQLKPEQF 250 (292)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCHHHHHTTT--TSCHHHHHH-----H-HHCCCCGGGH
T ss_pred CEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEecCCchhhhhhh--cccHHHHhh-----h-hcEEEcHHHH
Confidence 99999999844 4888999999999999999999988533221100000 000011110 1 1223457899
Q ss_pred cHHHHHhh--CCCceeeEEEc
Q 045543 210 YGMALTAK--NGFKGVNYESF 228 (239)
Q Consensus 210 ~~~~ll~~--aGf~~~~~~~~ 228 (239)
.++|.+ +||+.++++..
T Consensus 251 --~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 251 --SSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp --HHHHTSTTTCCCEEEEC--
T ss_pred --HHHHHhcCCCceEEEEecc
Confidence 999999 99998887654
No 90
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=98.76 E-value=1.1e-08 Score=82.59 Aligned_cols=67 Identities=13% Similarity=0.222 Sum_probs=54.7
Q ss_pred CCCcceEEEeCCCCCC-------------------------------------CccccccccCC-c-ceeeechhhhcCC
Q 045543 106 FEKIKQLVDVGGGCGK-------------------------------------CGWKMFQKILN-G-DAILMKLILRNWD 146 (239)
Q Consensus 106 ~~~~~~vlDvGGG~G~-------------------------------------~~gD~~~~~p~-~-D~~~l~~vlH~~~ 146 (239)
..+..+|||||||+|. +.+|+.+..+. . |+|++.+++|+++
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~ 128 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYYLE 128 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGGSS
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHhCC
Confidence 5667899999999999 34555552233 3 9999999999998
Q ss_pred h-hHHHHHHHHHHhhCCCCceEEEEee
Q 045543 147 D-EHCLSLLKNCYEAIPGNGKIIIIDS 172 (239)
Q Consensus 147 d-~~~~~iL~~~~~aL~pgg~lli~d~ 172 (239)
+ ++..++|+++++.|+|||++++...
T Consensus 129 ~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 129 DMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp SHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 6 5667999999999999999998664
No 91
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=98.76 E-value=2.6e-08 Score=83.30 Aligned_cols=83 Identities=10% Similarity=-0.098 Sum_probs=59.2
Q ss_pred ccccc-ccC--Cc-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccC
Q 045543 124 WKMFQ-KIL--NG-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLS 199 (239)
Q Consensus 124 gD~~~-~~p--~~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~ 199 (239)
+|+++ +.+ .. |+|+.+.+||.+++++..++++++++.|+|||+++++....+..... .
T Consensus 140 ~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~-----------------g- 201 (252)
T 2gb4_A 140 CSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHA-----------------G- 201 (252)
T ss_dssp SCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCC-----------------C-
T ss_pred CccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCC-----------------C-
Confidence 35555 332 23 99999999999998888899999999999999998765543321100 0
Q ss_pred CccccChhhccHHHHHhhCCCceeeEEE
Q 045543 200 GEKERTKQEYYGMALTAKNGFKGVNYES 227 (239)
Q Consensus 200 ~g~~rt~~e~~~~~ll~~aGf~~~~~~~ 227 (239)
.....+.+|+ .++++. +|+++....
T Consensus 202 ~~~~~~~~el--~~~l~~-~f~v~~~~~ 226 (252)
T 2gb4_A 202 PPFYVPSAEL--KRLFGT-KCSMQCLEE 226 (252)
T ss_dssp SSCCCCHHHH--HHHHTT-TEEEEEEEE
T ss_pred CCCCCCHHHH--HHHhhC-CeEEEEEec
Confidence 0012578899 999988 599877654
No 92
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=98.75 E-value=8e-09 Score=86.69 Aligned_cols=65 Identities=9% Similarity=0.069 Sum_probs=52.1
Q ss_pred CcceEEEeCCCCCC---------------------------------Ccccccc-ccCCc--ceeeechhhhcCChhHHH
Q 045543 108 KIKQLVDVGGGCGK---------------------------------CGWKMFQ-KILNG--DAILMKLILRNWDDEHCL 151 (239)
Q Consensus 108 ~~~~vlDvGGG~G~---------------------------------~~gD~~~-~~p~~--D~~~l~~vlH~~~d~~~~ 151 (239)
...+|||||||+|. +.+|+.+ ++|.+ |+|++..++|.++.+
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~--- 115 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLD--- 115 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCHH---
T ss_pred CCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhHH---
Confidence 45789999999999 3455544 56653 999999999877543
Q ss_pred HHHHHHHhhCCCCceEEEEeeecC
Q 045543 152 SLLKNCYEAIPGNGKIIIIDSTTV 175 (239)
Q Consensus 152 ~iL~~~~~aL~pgg~lli~d~~~~ 175 (239)
+.++++++.|||||+|+++.+..+
T Consensus 116 ~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 116 RFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp HHHHHHHHHEEEEEEEEEEEECCC
T ss_pred HHHHHHHHHcCCCCEEEEEECCCC
Confidence 689999999999999999887543
No 93
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=98.74 E-value=2.4e-08 Score=81.87 Aligned_cols=111 Identities=16% Similarity=0.104 Sum_probs=71.7
Q ss_pred HhhccCCCCcceEEEeCCCCCC---------------------------------------Ccccccc-----ccCCc-c
Q 045543 100 LDYYKGFEKIKQLVDVGGGCGK---------------------------------------CGWKMFQ-----KILNG-D 134 (239)
Q Consensus 100 ~~~~~~~~~~~~vlDvGGG~G~---------------------------------------~~gD~~~-----~~p~~-D 134 (239)
++.++ +.+..+|||+|||+|. +.+|+.+ +++.. |
T Consensus 67 l~~~~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D 145 (230)
T 1fbn_A 67 LKVMP-IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVD 145 (230)
T ss_dssp CCCCC-CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEE
T ss_pred ccccC-CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEE
Confidence 33444 6677899999999998 2344433 11223 8
Q ss_pred eeeechhhhcCChh-HHHHHHHHHHhhCCCCceEEEEeeecCC-CCCCChhhhhhhhhhHHHhhccCCccccChhhccHH
Q 045543 135 AILMKLILRNWDDE-HCLSLLKNCYEAIPGNGKIIIIDSTTVV-IPEATPATREASSIDIIMLMQLSGEKERTKQEYYGM 212 (239)
Q Consensus 135 ~~~l~~vlH~~~d~-~~~~iL~~~~~aL~pgg~lli~d~~~~~-~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~ 212 (239)
+|+ |+.++. ....+|+++++.|+|||++++. ..... +...+ .. ....+++ .
T Consensus 146 ~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~~~----------~~---------~~~~~~l--~ 198 (230)
T 1fbn_A 146 VIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSIDVTKD----------PK---------EIFKEQK--E 198 (230)
T ss_dssp EEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCSSSC----------HH---------HHHHHHH--H
T ss_pred EEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCCCCCCC----------HH---------HhhHHHH--H
Confidence 877 666544 4467799999999999999997 22111 11111 00 0112566 7
Q ss_pred HHHhhCCCceeeEEEcCC---ceeEEEEEC
Q 045543 213 ALTAKNGFKGVNYESFVC---NFYIMEFIK 239 (239)
Q Consensus 213 ~ll~~aGf~~~~~~~~~~---~~~vie~~k 239 (239)
+|+++||+.++...+.. .+.++.++|
T Consensus 199 -~l~~~Gf~~~~~~~~~~~~~~~~~v~~~k 227 (230)
T 1fbn_A 199 -ILEAGGFKIVDEVDIEPFEKDHVMFVGIW 227 (230)
T ss_dssp -HHHHHTEEEEEEEECTTTSTTEEEEEEEE
T ss_pred -HHHHCCCEEEEEEccCCCccceEEEEEEe
Confidence 89999999999887754 377777764
No 94
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=98.70 E-value=3e-08 Score=79.72 Aligned_cols=107 Identities=15% Similarity=0.069 Sum_probs=69.9
Q ss_pred HHHhhccCCCCcceEEEeCCCCCC--------------------------------Ccccccc-ccCC-c-ceeeechhh
Q 045543 98 RILDYYKGFEKIKQLVDVGGGCGK--------------------------------CGWKMFQ-KILN-G-DAILMKLIL 142 (239)
Q Consensus 98 ~~~~~~~~~~~~~~vlDvGGG~G~--------------------------------~~gD~~~-~~p~-~-D~~~l~~vl 142 (239)
.++..+. .+..+|||||||+|. +.+|+.+ +++. . |+|++.+++
T Consensus 28 ~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 105 (211)
T 2gs9_A 28 RALKGLL--PPGESLLEVGAGTGYWLRRLPYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTL 105 (211)
T ss_dssp HHHHTTC--CCCSEEEEETCTTCHHHHHCCCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCT
T ss_pred HHHHHhc--CCCCeEEEECCCCCHhHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChh
Confidence 3444443 266899999999996 2344444 4444 3 999999999
Q ss_pred hcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhh--ccCCccccChhhccHHHHHhhCC
Q 045543 143 RNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLM--QLSGEKERTKQEYYGMALTAKNG 219 (239)
Q Consensus 143 H~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~--~~~~g~~rt~~e~~~~~ll~~aG 219 (239)
|++++. .++|+++++.|+|||++++.+..... ++.. ....+.... .....+.+|.+++ +++|+ |
T Consensus 106 ~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~s~~~l--~~~l~--G 171 (211)
T 2gs9_A 106 EFVEDV--ERVLLEARRVLRPGGALVVGVLEALS----PWAA---LYRRLGEKGVLPWAQARFLAREDL--KALLG--P 171 (211)
T ss_dssp TTCSCH--HHHHHHHHHHEEEEEEEEEEEECTTS----HHHH---HHHHHHHTTCTTGGGCCCCCHHHH--HHHHC--S
T ss_pred hhcCCH--HHHHHHHHHHcCCCCEEEEEecCCcC----cHHH---HHHHHhhccCccccccccCCHHHH--HHHhc--C
Confidence 999865 58999999999999999998753221 1100 011110000 0012345799999 99999 7
No 95
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=98.69 E-value=2.3e-08 Score=84.04 Aligned_cols=75 Identities=8% Similarity=0.057 Sum_probs=59.7
Q ss_pred cHHHHHhhccCCCCcceEEEeCCCCCC---------------------------------Ccccccc-cc------CCc-
Q 045543 95 VMNRILDYYKGFEKIKQLVDVGGGCGK---------------------------------CGWKMFQ-KI------LNG- 133 (239)
Q Consensus 95 ~~~~~~~~~~~~~~~~~vlDvGGG~G~---------------------------------~~gD~~~-~~------p~~- 133 (239)
....+++.++ ..+..+|||||||+|. +.+|+.+ +. +..
T Consensus 33 ~~~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~f 111 (261)
T 3iv6_A 33 DRENDIFLEN-IVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHF 111 (261)
T ss_dssp HHHHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCC
T ss_pred HHHHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCc
Confidence 3456677776 7788999999999998 2233332 22 223
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIID 171 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d 171 (239)
|+|++..++|+++.++....|+++++.| |||+|++.-
T Consensus 112 D~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~ 148 (261)
T 3iv6_A 112 DFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASV 148 (261)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred cEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEe
Confidence 9999999999999999999999999999 999999864
No 96
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=98.66 E-value=4.3e-08 Score=83.36 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=33.1
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeee
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDST 173 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~ 173 (239)
|+|++..++|++ + ...+|+++++.|+|||+|++.++.
T Consensus 115 D~V~~~~~l~~~-~--~~~~l~~~~~~LkpgG~l~i~~~~ 151 (299)
T 3g5t_A 115 DMITAVECAHWF-D--FEKFQRSAYANLRKDGTIAIWGYA 151 (299)
T ss_dssp EEEEEESCGGGS-C--HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eEEeHhhHHHHh-C--HHHHHHHHHHhcCCCcEEEEEecC
Confidence 999999999999 3 469999999999999999996654
No 97
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=98.60 E-value=1.2e-07 Score=74.56 Aligned_cols=109 Identities=15% Similarity=0.245 Sum_probs=75.3
Q ss_pred HHHHhhccCCCCcceEEEeCCCCCC---------------------------------C--------ccccccccCC-c-
Q 045543 97 NRILDYYKGFEKIKQLVDVGGGCGK---------------------------------C--------GWKMFQKILN-G- 133 (239)
Q Consensus 97 ~~~~~~~~~~~~~~~vlDvGGG~G~---------------------------------~--------~gD~~~~~p~-~- 133 (239)
..+++.++ ..+..+|||+|||+|. . .+|+.+..+. .
T Consensus 42 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 120 (194)
T 1dus_A 42 KILVENVV-VDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKY 120 (194)
T ss_dssp HHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCE
T ss_pred HHHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccCCc
Confidence 45566666 6677899999999997 1 1344443333 3
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHH
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMA 213 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ 213 (239)
|+|++...+| +..+....+++++++.|+|||++++....... ..++ .+
T Consensus 121 D~v~~~~~~~-~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~-----------------------------~~~~--~~ 168 (194)
T 1dus_A 121 NKIITNPPIR-AGKEVLHRIIEEGKELLKDNGEIWVVIQTKQG-----------------------------AKSL--AK 168 (194)
T ss_dssp EEEEECCCST-TCHHHHHHHHHHHHHHEEEEEEEEEEEESTHH-----------------------------HHHH--HH
T ss_pred eEEEECCCcc-cchhHHHHHHHHHHHHcCCCCEEEEEECCCCC-----------------------------hHHH--HH
Confidence 9999988887 34566789999999999999999997653110 0134 55
Q ss_pred HHhhCCCceeeEEEcCCceeEEEEEC
Q 045543 214 LTAKNGFKGVNYESFVCNFYIMEFIK 239 (239)
Q Consensus 214 ll~~aGf~~~~~~~~~~~~~vie~~k 239 (239)
++++. |..+++........++.++|
T Consensus 169 ~l~~~-~~~~~~~~~~~~~~~~~~~k 193 (194)
T 1dus_A 169 YMKDV-FGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp HHHHH-HSCCEEEEEETTEEEEEEEC
T ss_pred HHHHH-hcceEEEecCCcEEEEEEee
Confidence 56665 55566666666677777765
No 98
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=98.59 E-value=2e-07 Score=72.91 Aligned_cols=90 Identities=13% Similarity=0.184 Sum_probs=68.5
Q ss_pred CCcceEEEeCCCCCC-----------------------------CccccccccCC-c-ceeeechhhhcCChh-------
Q 045543 107 EKIKQLVDVGGGCGK-----------------------------CGWKMFQKILN-G-DAILMKLILRNWDDE------- 148 (239)
Q Consensus 107 ~~~~~vlDvGGG~G~-----------------------------~~gD~~~~~p~-~-D~~~l~~vlH~~~d~------- 148 (239)
.+..+|||+|||+|. +.+|++++++. . |++++...+|..++.
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~~v~gvD~s~~~~~~~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~~~~~~~ 101 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRNTVVSTDLNIRALESHRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDPIIGGGY 101 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTSEEEEEESCHHHHHTCSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCTTTBCCG
T ss_pred CCCCeEEEeccCccHHHHHHHhcCcEEEEECCHHHHhcccCCeEEECChhhhcccCCCCEEEECCCCccCCccccccCCc
Confidence 345699999999998 44677665553 3 999999888865544
Q ss_pred HHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEc
Q 045543 149 HCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESF 228 (239)
Q Consensus 149 ~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~ 228 (239)
+...+++++.+.+ |||++++.+... .+.+++ .++++++||+.+.+...
T Consensus 102 ~~~~~~~~~~~~l-pgG~l~~~~~~~-----------------------------~~~~~l--~~~l~~~gf~~~~~~~~ 149 (170)
T 3q87_B 102 LGREVIDRFVDAV-TVGMLYLLVIEA-----------------------------NRPKEV--LARLEERGYGTRILKVR 149 (170)
T ss_dssp GGCHHHHHHHHHC-CSSEEEEEEEGG-----------------------------GCHHHH--HHHHHHTTCEEEEEEEE
T ss_pred chHHHHHHHHhhC-CCCEEEEEEecC-----------------------------CCHHHH--HHHHHHCCCcEEEEEee
Confidence 4567899999999 999999876311 134567 88899999998887665
No 99
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=98.58 E-value=3.7e-07 Score=76.77 Aligned_cols=101 Identities=13% Similarity=0.070 Sum_probs=73.3
Q ss_pred CCcceEEEeCCCCCC-----------------------------------------CccccccccCC-c-ceeeec----
Q 045543 107 EKIKQLVDVGGGCGK-----------------------------------------CGWKMFQKILN-G-DAILMK---- 139 (239)
Q Consensus 107 ~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~~p~-~-D~~~l~---- 139 (239)
.+..+|||+|||+|. +.+|++++++. . |+|++.
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy~ 187 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 187 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECCCCC
Confidence 345799999999998 45677765543 3 999987
Q ss_pred ---------hhhhcCCh----------hHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCC
Q 045543 140 ---------LILRNWDD----------EHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSG 200 (239)
Q Consensus 140 ---------~vlH~~~d----------~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~ 200 (239)
.++++.+. +....+++++++.|+|||++++.. +
T Consensus 188 ~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~--------~-------------------- 239 (276)
T 2b3t_A 188 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH--------G-------------------- 239 (276)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC--------C--------------------
T ss_pred CccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE--------C--------------------
Confidence 45554442 456899999999999999998841 0
Q ss_pred ccccChhhccHHHHHhhCCCceeeEEEc-CCceeEEEEEC
Q 045543 201 EKERTKQEYYGMALTAKNGFKGVNYESF-VCNFYIMEFIK 239 (239)
Q Consensus 201 g~~rt~~e~~~~~ll~~aGf~~~~~~~~-~~~~~vie~~k 239 (239)
..+.+++ .++++++||+.+++..- .+...++.++|
T Consensus 240 --~~~~~~~--~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 240 --WQQGEAV--RQAFILAGYHDVETCRDYGDNERVTLGRY 275 (276)
T ss_dssp --SSCHHHH--HHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred --chHHHHH--HHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence 0134667 89999999998887654 45666776664
No 100
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=98.56 E-value=1.7e-07 Score=80.19 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=34.7
Q ss_pred ceeeechhhhcC--ChhHHHHHHHHHHhhCCCCceEEEEee
Q 045543 134 DAILMKLILRNW--DDEHCLSLLKNCYEAIPGNGKIIIIDS 172 (239)
Q Consensus 134 D~~~l~~vlH~~--~d~~~~~iL~~~~~aL~pgg~lli~d~ 172 (239)
|+|++..++|.. +.++...+|++++++|+|||++++...
T Consensus 116 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 116 DICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp EEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred EEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 999999999986 446678999999999999999998765
No 101
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=98.56 E-value=6.8e-08 Score=79.79 Aligned_cols=110 Identities=7% Similarity=0.025 Sum_probs=68.0
Q ss_pred hccCCCCcceEEEeCCCCCC----------------------------------------Ccccccc--ccC---C-cce
Q 045543 102 YYKGFEKIKQLVDVGGGCGK----------------------------------------CGWKMFQ--KIL---N-GDA 135 (239)
Q Consensus 102 ~~~~~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~--~~p---~-~D~ 135 (239)
.++ +++..+|||+|||+|. +.+|... ..| . .|+
T Consensus 72 ~l~-ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDv 150 (233)
T 4df3_A 72 ELP-VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDG 150 (233)
T ss_dssp CCC-CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEE
T ss_pred hcC-CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEE
Confidence 344 7788999999999998 2223222 111 1 277
Q ss_pred eeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHH
Q 045543 136 ILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALT 215 (239)
Q Consensus 136 ~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll 215 (239)
+++. ++.. ++...++++++++|||||+++|.......+...+ .. ...++. .+.|
T Consensus 151 Vf~d--~~~~--~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p-------------------~~-~~~~~e--v~~L 204 (233)
T 4df3_A 151 LYAD--VAQP--EQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTE-------------------PS-EVYKRE--IKTL 204 (233)
T ss_dssp EEEC--CCCT--THHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTC-------------------CC-HHHHHH--HHHH
T ss_pred EEEe--ccCC--hhHHHHHHHHHHhccCCCEEEEEEecccCCCCCC-------------------hH-HHHHHH--HHHH
Confidence 7643 2222 2346889999999999999999753221111000 00 112334 6678
Q ss_pred hhCCCceeeEEEcCC---ceeEEEEE
Q 045543 216 AKNGFKGVNYESFVC---NFYIMEFI 238 (239)
Q Consensus 216 ~~aGf~~~~~~~~~~---~~~vie~~ 238 (239)
+++||++++...+.. .|.++.++
T Consensus 205 ~~~GF~l~e~i~L~pf~~~H~lv~~~ 230 (233)
T 4df3_A 205 MDGGLEIKDVVHLDPFDRDHAMIYAV 230 (233)
T ss_dssp HHTTCCEEEEEECTTTSTTEEEEEEC
T ss_pred HHCCCEEEEEEccCCCCCceEEEEEE
Confidence 899999999887643 46666654
No 102
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=98.55 E-value=2.4e-07 Score=74.11 Aligned_cols=70 Identities=10% Similarity=0.082 Sum_probs=53.6
Q ss_pred HHHHhhccCCCCcceEEEeCCCCCC-----------------------------------------CccccccccC--C-
Q 045543 97 NRILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQKIL--N- 132 (239)
Q Consensus 97 ~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~~p--~- 132 (239)
..+++.++ ..+..+|||||||+|. +.+|+.+.++ .
T Consensus 30 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 108 (204)
T 3e05_A 30 AVTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPD 108 (204)
T ss_dssp HHHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCC
T ss_pred HHHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCC
Confidence 34556666 7778999999999998 3455555333 2
Q ss_pred cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEee
Q 045543 133 GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDS 172 (239)
Q Consensus 133 ~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~ 172 (239)
.|++++...++ +...+++++++.|+|||++++...
T Consensus 109 ~D~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~ 143 (204)
T 3e05_A 109 PDRVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAV 143 (204)
T ss_dssp CSEEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred CCEEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEec
Confidence 39999988876 345899999999999999998643
No 103
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=98.54 E-value=8e-08 Score=85.45 Aligned_cols=79 Identities=16% Similarity=0.212 Sum_probs=60.9
Q ss_pred HHHHHhhccCCCCcceEEEeCCCCCC--------------------------------------------------Cccc
Q 045543 96 MNRILDYYKGFEKIKQLVDVGGGCGK--------------------------------------------------CGWK 125 (239)
Q Consensus 96 ~~~~~~~~~~~~~~~~vlDvGGG~G~--------------------------------------------------~~gD 125 (239)
...+++.+. +.+..+|+|||||+|. +.||
T Consensus 162 i~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 162 VAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 445666666 7888999999999999 1356
Q ss_pred ccc-ccC----CcceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCC
Q 045543 126 MFQ-KIL----NGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIP 178 (239)
Q Consensus 126 ~~~-~~p----~~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~ 178 (239)
+++ +++ .+|+|++.+++| + ++....|+++++.|+|||+|++.|.+.+++.
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~ 295 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKEGGRIVSSKPFAPLNF 295 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCTTCEEEESSCSSCTTC
T ss_pred ccCCccccccCCccEEEEccccc-C--chHHHHHHHHHHcCCCCcEEEEeecccCCCC
Confidence 665 442 359999988874 3 3456778999999999999999999887764
No 104
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=98.51 E-value=3.1e-08 Score=81.77 Aligned_cols=73 Identities=12% Similarity=0.054 Sum_probs=43.5
Q ss_pred ceee-----echhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhh
Q 045543 134 DAIL-----MKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQE 208 (239)
Q Consensus 134 D~~~-----l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e 208 (239)
|.++ ....++++.+. ..+++++++.|||||++++.+....... .....+ .-.....+.
T Consensus 130 D~i~~D~~~~~~~~~~~~~~--~~~~~e~~rvLkPGG~l~f~~~~~~~~~-------~~~~~~--------~~~~~~~~~ 192 (236)
T 3orh_A 130 DGILYDTYPLSEETWHTHQF--NFIKNHAFRLLKPGGVLTYCNLTSWGEL-------MKSKYS--------DITIMFEET 192 (236)
T ss_dssp EEEEECCCCCBGGGTTTHHH--HHHHHTHHHHEEEEEEEEECCHHHHHHH-------TTTTCS--------CHHHHHHHH
T ss_pred ceEEEeeeecccchhhhcch--hhhhhhhhheeCCCCEEEEEecCCchhh-------hhhhhh--------hhhhhhHHH
Confidence 6554 45666666554 5899999999999999987643211100 000000 111122355
Q ss_pred ccHHHHHhhCCCceeeE
Q 045543 209 YYGMALTAKNGFKGVNY 225 (239)
Q Consensus 209 ~~~~~ll~~aGf~~~~~ 225 (239)
+ ...|.++||+...+
T Consensus 193 ~--~~~L~eaGF~~~~i 207 (236)
T 3orh_A 193 Q--VPALLEAGFRRENI 207 (236)
T ss_dssp T--HHHHHHHTCCGGGE
T ss_pred H--HHHHHHcCCeEEEE
Confidence 6 77788999997654
No 105
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=98.50 E-value=5.5e-08 Score=79.86 Aligned_cols=67 Identities=15% Similarity=0.190 Sum_probs=49.8
Q ss_pred CCcceEEEeCCCCCC---------------------------------------Ccccccc---ccCC-c-ceeee-chh
Q 045543 107 EKIKQLVDVGGGCGK---------------------------------------CGWKMFQ---KILN-G-DAILM-KLI 141 (239)
Q Consensus 107 ~~~~~vlDvGGG~G~---------------------------------------~~gD~~~---~~p~-~-D~~~l-~~v 141 (239)
.+..+|||||||+|. +.+|+.+ +++. . |+|++ .+.
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~ 138 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 138 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCcc
Confidence 456799999999998 2344433 3444 3 99988 554
Q ss_pred --hhcCChhHHHHHHHHHHhhCCCCceEEEEeee
Q 045543 142 --LRNWDDEHCLSLLKNCYEAIPGNGKIIIIDST 173 (239)
Q Consensus 142 --lH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~ 173 (239)
.|++...+...+|+++++.|+|||++++++..
T Consensus 139 ~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 139 LSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp CBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred cchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 55565566678999999999999999987653
No 106
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=98.47 E-value=1.4e-07 Score=75.44 Aligned_cols=110 Identities=11% Similarity=0.047 Sum_probs=65.0
Q ss_pred HHHhhccCCCCcceEEEeCCCCCC----------------------------------------CccccccccC------
Q 045543 98 RILDYYKGFEKIKQLVDVGGGCGK----------------------------------------CGWKMFQKIL------ 131 (239)
Q Consensus 98 ~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~~~p------ 131 (239)
.+++.++...+..+|||+|||+|. +.+|++++++
T Consensus 20 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 99 (215)
T 4dzr_A 20 EAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERG 99 (215)
T ss_dssp HHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTT
T ss_pred HHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhcc
Confidence 444444423677899999999998 2345544333
Q ss_pred C-cceeeec------hhhhcCChhHH------------------HHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhh
Q 045543 132 N-GDAILMK------LILRNWDDEHC------------------LSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATRE 186 (239)
Q Consensus 132 ~-~D~~~l~------~vlH~~~d~~~------------------~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~ 186 (239)
. .|+|++. ..+|.++++.. ..+++++++.|+|||++++++...
T Consensus 100 ~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------------ 167 (215)
T 4dzr_A 100 RPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH------------ 167 (215)
T ss_dssp CCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT------------
T ss_pred CcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC------------
Confidence 2 3999984 44444444333 789999999999999966654311
Q ss_pred hhhhhHHHhhccCCccccChhhccHHHHHh--hCCCceeeEEEcC-CceeEEEEE
Q 045543 187 ASSIDIIMLMQLSGEKERTKQEYYGMALTA--KNGFKGVNYESFV-CNFYIMEFI 238 (239)
Q Consensus 187 ~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~--~aGf~~~~~~~~~-~~~~vie~~ 238 (239)
...+++ .++++ ++||..+++.... +...++.++
T Consensus 168 -----------------~~~~~~--~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~ 203 (215)
T 4dzr_A 168 -----------------NQADEV--ARLFAPWRERGFRVRKVKDLRGIDRVIAVT 203 (215)
T ss_dssp -----------------SCHHHH--HHHTGGGGGGTEECCEEECTTSCEEEEEEE
T ss_pred -----------------ccHHHH--HHHHHHhhcCCceEEEEEecCCCEEEEEEE
Confidence 122345 66777 7888877776643 334444443
No 107
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=98.46 E-value=5.9e-07 Score=73.07 Aligned_cols=107 Identities=12% Similarity=0.089 Sum_probs=68.4
Q ss_pred CCCcceEEEeCCCCCC----------------------------------------Cccccccc-----cCCc-ceeeec
Q 045543 106 FEKIKQLVDVGGGCGK----------------------------------------CGWKMFQK-----ILNG-DAILMK 139 (239)
Q Consensus 106 ~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~~-----~p~~-D~~~l~ 139 (239)
+.+..+|||+|||+|. +.+|+.+. .+.. |+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 5667899999999998 33455441 2233 888854
Q ss_pred hhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCC
Q 045543 140 LILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNG 219 (239)
Q Consensus 140 ~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aG 219 (239)
.. ..+....+++++++.|+|||++++. .........+ .. ...+.+++ .++ .++
T Consensus 151 ~~----~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~---------~~---------~~~~~~~l--~~l-~~~- 203 (227)
T 1g8a_A 151 VA----QPTQAKILIDNAEVYLKRGGYGMIA-VKSRSIDVTK---------EP---------EQVFREVE--REL-SEY- 203 (227)
T ss_dssp CC----STTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCTTS---------CH---------HHHHHHHH--HHH-HTT-
T ss_pred CC----CHhHHHHHHHHHHHhcCCCCEEEEE-EecCCCCCCC---------Ch---------hhhhHHHH--HHH-Hhh-
Confidence 33 2333456699999999999999998 3221111110 00 01234566 777 777
Q ss_pred CceeeEEEcCCc---eeEEEEEC
Q 045543 220 FKGVNYESFVCN---FYIMEFIK 239 (239)
Q Consensus 220 f~~~~~~~~~~~---~~vie~~k 239 (239)
|++++...+... +.++.++|
T Consensus 204 f~~~~~~~~~~~~~~~~~~~~~~ 226 (227)
T 1g8a_A 204 FEVIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp SEEEEEEECTTTSSSEEEEEEEC
T ss_pred ceeeeEeccCcccCCCEEEEEEe
Confidence 999988877543 77777765
No 108
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=98.46 E-value=1.3e-07 Score=75.65 Aligned_cols=67 Identities=15% Similarity=0.156 Sum_probs=53.5
Q ss_pred CCcceEEEeCCCCCC--------------------------------------Ccccccc-ccCC-c-ceeeechhhhcC
Q 045543 107 EKIKQLVDVGGGCGK--------------------------------------CGWKMFQ-KILN-G-DAILMKLILRNW 145 (239)
Q Consensus 107 ~~~~~vlDvGGG~G~--------------------------------------~~gD~~~-~~p~-~-D~~~l~~vlH~~ 145 (239)
.+..+|||||||+|. +.+|+.+ +++. . |+|++..++|..
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~ 120 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDAL 120 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhhh
Confidence 556899999999998 2345554 4443 3 999999999876
Q ss_pred C-------------hhHHHHHHHHHHhhCCCCceEEEEeee
Q 045543 146 D-------------DEHCLSLLKNCYEAIPGNGKIIIIDST 173 (239)
Q Consensus 146 ~-------------d~~~~~iL~~~~~aL~pgg~lli~d~~ 173 (239)
. .++...+|+++++.|+|||++++.++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 161 (215)
T 2pxx_A 121 LAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA 161 (215)
T ss_dssp TTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred ccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence 5 456789999999999999999998754
No 109
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=98.43 E-value=3e-07 Score=76.63 Aligned_cols=96 Identities=14% Similarity=0.109 Sum_probs=68.7
Q ss_pred CCcceEEEeCCCCCC--------------------------------------CccccccccCC--cceeeechhhhcCC
Q 045543 107 EKIKQLVDVGGGCGK--------------------------------------CGWKMFQKILN--GDAILMKLILRNWD 146 (239)
Q Consensus 107 ~~~~~vlDvGGG~G~--------------------------------------~~gD~~~~~p~--~D~~~l~~vlH~~~ 146 (239)
.+..+|||+|||+|. ..+|+.+.+|. .|+|++....|
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~--- 195 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE--- 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH---
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH---
Confidence 456899999999998 12333333443 39998765443
Q ss_pred hhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEE
Q 045543 147 DEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYE 226 (239)
Q Consensus 147 d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~ 226 (239)
....+++++++.|+|||++++.+.... +.+++ .++++++||+++++.
T Consensus 196 --~~~~~l~~~~~~LkpgG~lils~~~~~-----------------------------~~~~v--~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 196 --LHAALAPRYREALVPGGRALLTGILKD-----------------------------RAPLV--REAMAGAGFRPLEEA 242 (254)
T ss_dssp --HHHHHHHHHHHHEEEEEEEEEEEEEGG-----------------------------GHHHH--HHHHHHTTCEEEEEE
T ss_pred --HHHHHHHHHHHHcCCCCEEEEEeeccC-----------------------------CHHHH--HHHHHHCCCEEEEEe
Confidence 357899999999999999999754321 24567 899999999999887
Q ss_pred EcCCceeEEEEEC
Q 045543 227 SFVCNFYIMEFIK 239 (239)
Q Consensus 227 ~~~~~~~vie~~k 239 (239)
......+ +.++|
T Consensus 243 ~~~~W~~-l~~~k 254 (254)
T 2nxc_A 243 AEGEWVL-LAYGR 254 (254)
T ss_dssp EETTEEE-EEEEC
T ss_pred ccCCeEE-EEEEC
Confidence 7665544 44544
No 110
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=98.41 E-value=1.7e-07 Score=75.71 Aligned_cols=65 Identities=8% Similarity=0.047 Sum_probs=38.7
Q ss_pred HHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEc
Q 045543 151 LSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESF 228 (239)
Q Consensus 151 ~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~ 228 (239)
..+|+++++.|+|||++++.-....-....+ ...++ ..-...+..+++ .++++++||++.++..+
T Consensus 120 ~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~------~~~~~-----~~~~~~~~~~~l--~~~l~~aGf~i~~~~~~ 184 (218)
T 3mq2_A 120 PEMLRGMAAVCRPGASFLVALNLHAWRPSVP------EVGEH-----PEPTPDSADEWL--APRYAEAGWKLADCRYL 184 (218)
T ss_dssp SHHHHHHHHTEEEEEEEEEEEEGGGBTTBCG------GGTTC-----CCCCHHHHHHHH--HHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEecccccccccc------ccccC-----CccchHHHHHHH--HHHHHHcCCCceeeecc
Confidence 5899999999999999998432211111000 00000 001112233457 88999999999887654
No 111
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=98.41 E-value=3.7e-07 Score=70.95 Aligned_cols=69 Identities=17% Similarity=0.254 Sum_probs=51.5
Q ss_pred HHHhhccCCCCcceEEEeCCCCCC-----------------------------------C------ccccccccC---C-
Q 045543 98 RILDYYKGFEKIKQLVDVGGGCGK-----------------------------------C------GWKMFQKIL---N- 132 (239)
Q Consensus 98 ~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------~------~gD~~~~~p---~- 132 (239)
.+++.++ ..+..+|||||||+|. . .+|..+.+| .
T Consensus 16 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 94 (178)
T 3hm2_A 16 LAISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDN 94 (178)
T ss_dssp HHHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSC
T ss_pred HHHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCC
Confidence 4455566 6777899999999998 1 233333333 2
Q ss_pred cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeee
Q 045543 133 GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDST 173 (239)
Q Consensus 133 ~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~ 173 (239)
.|+|++...+|+ ..+++++++.|+|||++++.+..
T Consensus 95 ~D~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~~ 129 (178)
T 3hm2_A 95 PDVIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAVT 129 (178)
T ss_dssp CSEEEECC-TTC------TTHHHHHHHTCCTTCEEEEEECS
T ss_pred CCEEEECCcccH------HHHHHHHHHhcCCCCEEEEEeec
Confidence 399999999987 57899999999999999987643
No 112
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=98.38 E-value=1.5e-07 Score=81.87 Aligned_cols=76 Identities=16% Similarity=0.293 Sum_probs=59.1
Q ss_pred HHHHHhhccCCCCcceEEEeCCCCCC----------------------------------------CccccccccCCc-c
Q 045543 96 MNRILDYYKGFEKIKQLVDVGGGCGK----------------------------------------CGWKMFQKILNG-D 134 (239)
Q Consensus 96 ~~~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~~~p~~-D 134 (239)
...+++.++ .....+|||+|||+|. +.+|+++..+.. |
T Consensus 185 ~~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD 263 (343)
T 2pjd_A 185 SQLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFD 263 (343)
T ss_dssp HHHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEE
T ss_pred HHHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCee
Confidence 345666665 4456799999999999 345665533334 9
Q ss_pred eeeechhhhc---CChhHHHHHHHHHHhhCCCCceEEEEee
Q 045543 135 AILMKLILRN---WDDEHCLSLLKNCYEAIPGNGKIIIIDS 172 (239)
Q Consensus 135 ~~~l~~vlH~---~~d~~~~~iL~~~~~aL~pgg~lli~d~ 172 (239)
+|++..++|. ++.+...++|+++++.|+|||+++|+..
T Consensus 264 ~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 264 MIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp EEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred EEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 9999999986 4566778999999999999999999765
No 113
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=98.37 E-value=4.5e-07 Score=70.99 Aligned_cols=69 Identities=19% Similarity=0.160 Sum_probs=51.4
Q ss_pred HHHhhccCCCCcceEEEeCCCCCC----------------------------------------CccccccccCC--c-c
Q 045543 98 RILDYYKGFEKIKQLVDVGGGCGK----------------------------------------CGWKMFQKILN--G-D 134 (239)
Q Consensus 98 ~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~~~p~--~-D 134 (239)
.+++.++ ..+..+|||+|||+|. ..+|+.++++. . |
T Consensus 24 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 102 (192)
T 1l3i_A 24 LIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDID 102 (192)
T ss_dssp HHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEE
T ss_pred HHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCCC
Confidence 4445555 6777899999999998 12333333442 3 9
Q ss_pred eeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEee
Q 045543 135 AILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDS 172 (239)
Q Consensus 135 ~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~ 172 (239)
++++..++|++ ..+|+++++.|+|||++++...
T Consensus 103 ~v~~~~~~~~~-----~~~l~~~~~~l~~gG~l~~~~~ 135 (192)
T 1l3i_A 103 IAVVGGSGGEL-----QEILRIIKDKLKPGGRIIVTAI 135 (192)
T ss_dssp EEEESCCTTCH-----HHHHHHHHHTEEEEEEEEEEEC
T ss_pred EEEECCchHHH-----HHHHHHHHHhcCCCcEEEEEec
Confidence 99999887654 6889999999999999988653
No 114
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=98.37 E-value=2e-07 Score=77.60 Aligned_cols=65 Identities=17% Similarity=0.204 Sum_probs=49.9
Q ss_pred CcceEEEeCCCCCC---------------------------------Ccccccc-ccCC-c-ceeeechhhhcCChhHHH
Q 045543 108 KIKQLVDVGGGCGK---------------------------------CGWKMFQ-KILN-G-DAILMKLILRNWDDEHCL 151 (239)
Q Consensus 108 ~~~~vlDvGGG~G~---------------------------------~~gD~~~-~~p~-~-D~~~l~~vlH~~~d~~~~ 151 (239)
+..+|||||||+|. +.+|+.+ +++. . |+|++..+++++.++ ..
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~-~~ 132 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN-KD 132 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC-HH
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc-HH
Confidence 56799999999998 2234443 4443 3 999999877766433 67
Q ss_pred HHHHHHHhhCCCCceEEEEeee
Q 045543 152 SLLKNCYEAIPGNGKIIIIDST 173 (239)
Q Consensus 152 ~iL~~~~~aL~pgg~lli~d~~ 173 (239)
.+|+++++.|+|||++++....
T Consensus 133 ~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 133 KAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp HHHHHHHHHEEEEEEEEEEEEB
T ss_pred HHHHHHHHHcCCCeEEEEEeCC
Confidence 9999999999999999987653
No 115
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=98.35 E-value=6.8e-07 Score=73.10 Aligned_cols=106 Identities=8% Similarity=0.023 Sum_probs=67.3
Q ss_pred CCCcceEEEeCCCCCC----------------------------------------Cccccccc--cC--C-c-ceeeec
Q 045543 106 FEKIKQLVDVGGGCGK----------------------------------------CGWKMFQK--IL--N-G-DAILMK 139 (239)
Q Consensus 106 ~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~~--~p--~-~-D~~~l~ 139 (239)
+.+..+|||+|||+|. +.+|+.+. +| . . |+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 5677899999999997 34566542 22 2 3 999873
Q ss_pred hhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCC-CCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhC
Q 045543 140 LILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVV-IPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKN 218 (239)
Q Consensus 140 ~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~-~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~a 218 (239)
.. ..+....+++++++.|+|||++++ ...... ....+ ... + ..+. .++|+++
T Consensus 155 ~~----~~~~~~~~~~~~~~~LkpgG~l~i-~~~~~~~~~~~~----------~~~---------~-~~~~--~~~l~~~ 207 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLRNGGHFVI-SIKANCIDSTAS----------AEA---------V-FASE--VKKMQQE 207 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEEEEEEEEE-EEEHHHHCSSSC----------HHH---------H-HHHH--HHTTGGG
T ss_pred CC----CccHHHHHHHHHHHHcCCCeEEEE-EEcccccccCCC----------HHH---------H-HHHH--HHHHHHC
Confidence 33 344556789999999999999998 322110 11110 000 0 1122 4668999
Q ss_pred CCceeeEEEcC---CceeEEEEE
Q 045543 219 GFKGVNYESFV---CNFYIMEFI 238 (239)
Q Consensus 219 Gf~~~~~~~~~---~~~~vie~~ 238 (239)
||++++..... ..+.++.++
T Consensus 208 Gf~~~~~~~~~~~~~~~~~v~~~ 230 (233)
T 2ipx_A 208 NMKPQEQLTLEPYERDHAVVVGV 230 (233)
T ss_dssp TEEEEEEEECTTTSSSEEEEEEE
T ss_pred CCceEEEEecCCccCCcEEEEEE
Confidence 99999877654 346666665
No 116
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=98.34 E-value=3.7e-07 Score=78.20 Aligned_cols=39 Identities=18% Similarity=0.352 Sum_probs=33.9
Q ss_pred ceeeechhhhc-CChhHHHHHHHHHHhhCCCCceEEEEee
Q 045543 134 DAILMKLILRN-WDDEHCLSLLKNCYEAIPGNGKIIIIDS 172 (239)
Q Consensus 134 D~~~l~~vlH~-~~d~~~~~iL~~~~~aL~pgg~lli~d~ 172 (239)
|+|++..++|. |++++..++|+++++.|+|||++++...
T Consensus 131 D~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 131 NIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp EEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 99999999996 4555568999999999999999988665
No 117
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=98.29 E-value=7.4e-07 Score=73.03 Aligned_cols=68 Identities=12% Similarity=0.109 Sum_probs=37.6
Q ss_pred HHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcC
Q 045543 151 LSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFV 229 (239)
Q Consensus 151 ~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~ 229 (239)
..+|+++++.|+|||+++++..+... .... . + ...+.. .. .......+|+ .++++++||++..+...+
T Consensus 119 ~~~l~~~~r~LkpGG~l~i~~~~~~~-~~~~--~-~-~~~~~~---~~-~~~~~~~~el--~~~l~~aGf~v~~~~~~~ 186 (225)
T 3p2e_A 119 RDILSNVADLAKKEAHFEFVTTYSDS-YEEA--E-I-KKRGLP---LL-SKAYFLSEQY--KAELSNSGFRIDDVKELD 186 (225)
T ss_dssp HHHHHHHHTTEEEEEEEEEEECCCC----------------------C-CHHHHHSHHH--HHHHHHHTCEEEEEEEEC
T ss_pred HHHHHHHHHhcCCCcEEEEEEecccc-chhc--h-h-hhcCCC---CC-ChhhcchHHH--HHHHHHcCCCeeeeeecC
Confidence 36899999999999999994433222 1110 0 0 000000 00 0111122358 999999999998876543
No 118
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=98.26 E-value=2e-06 Score=69.92 Aligned_cols=93 Identities=12% Similarity=0.133 Sum_probs=62.3
Q ss_pred CCCcceEEEeCCC-CCC---------------------------------------Ccccc--ccccCC-c-ceeeechh
Q 045543 106 FEKIKQLVDVGGG-CGK---------------------------------------CGWKM--FQKILN-G-DAILMKLI 141 (239)
Q Consensus 106 ~~~~~~vlDvGGG-~G~---------------------------------------~~gD~--~~~~p~-~-D~~~l~~v 141 (239)
..+..+|||+||| +|. +.+|+ +.+++. . |+|++.-.
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp 132 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPP 132 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCC
Confidence 4567899999999 998 34553 334553 3 99998766
Q ss_pred hhcCChhH-----------------HHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCcccc
Q 045543 142 LRNWDDEH-----------------CLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKER 204 (239)
Q Consensus 142 lH~~~d~~-----------------~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~r 204 (239)
+|..++.+ ...+|+++.+.|+|||+++++-.. . ..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~-------------------------~~ 184 (230)
T 3evz_A 133 YYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPD---K-------------------------EK 184 (230)
T ss_dssp CC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEES---C-------------------------HH
T ss_pred CcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecc---c-------------------------Hh
Confidence 65544322 378999999999999999985211 0 01
Q ss_pred ChhhccHHHHHhhCCCceeeEEEc
Q 045543 205 TKQEYYGMALTAKNGFKGVNYESF 228 (239)
Q Consensus 205 t~~e~~~~~ll~~aGf~~~~~~~~ 228 (239)
+.+++ .+++++.||.+..+...
T Consensus 185 ~~~~~--~~~l~~~g~~~~~~~~~ 206 (230)
T 3evz_A 185 LLNVI--KERGIKLGYSVKDIKFK 206 (230)
T ss_dssp HHHHH--HHHHHHTTCEEEEEEEC
T ss_pred HHHHH--HHHHHHcCCceEEEEec
Confidence 23566 88899999977665443
No 119
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=98.25 E-value=2.3e-07 Score=75.68 Aligned_cols=81 Identities=14% Similarity=0.104 Sum_probs=58.3
Q ss_pred CCcceEEEeCCCCCC----------------------------------Ccccccc--ccC-C-c-ceeeechhhhcCCh
Q 045543 107 EKIKQLVDVGGGCGK----------------------------------CGWKMFQ--KIL-N-G-DAILMKLILRNWDD 147 (239)
Q Consensus 107 ~~~~~vlDvGGG~G~----------------------------------~~gD~~~--~~p-~-~-D~~~l~~vlH~~~d 147 (239)
.+..+|||||||+|. +.+|+.+ +++ . . |+|++. .
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~------~- 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR------R- 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE------S-
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC------C-
Confidence 456899999999998 4567755 333 3 3 999886 1
Q ss_pred hHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEE
Q 045543 148 EHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYES 227 (239)
Q Consensus 148 ~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~ 227 (239)
+...+|+++++.|+|||+++. -+...+.+++ .++++++||+..++..
T Consensus 120 -~~~~~l~~~~~~LkpgG~l~~------------------------------~~~~~~~~~~--~~~l~~~Gf~~~~~~~ 166 (226)
T 3m33_A 120 -GPTSVILRLPELAAPDAHFLY------------------------------VGPRLNVPEV--PERLAAVGWDIVAEDH 166 (226)
T ss_dssp -CCSGGGGGHHHHEEEEEEEEE------------------------------EESSSCCTHH--HHHHHHTTCEEEEEEE
T ss_pred -CHHHHHHHHHHHcCCCcEEEE------------------------------eCCcCCHHHH--HHHHHHCCCeEEEEEe
Confidence 234789999999999999980 0111244567 8888889988876653
No 120
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=98.24 E-value=2e-06 Score=69.64 Aligned_cols=105 Identities=16% Similarity=0.227 Sum_probs=64.9
Q ss_pred CCCcceEEEeCCCCCC---------------------------------------Cccccccc-----cCCc-ceeeech
Q 045543 106 FEKIKQLVDVGGGCGK---------------------------------------CGWKMFQK-----ILNG-DAILMKL 140 (239)
Q Consensus 106 ~~~~~~vlDvGGG~G~---------------------------------------~~gD~~~~-----~p~~-D~~~l~~ 140 (239)
..+..+|||||||+|. +.+|..++ ++.. |+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~- 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD- 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-
Confidence 5667899999999998 12344332 2233 998876
Q ss_pred hhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccH--HHHHhhC
Q 045543 141 ILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYG--MALTAKN 218 (239)
Q Consensus 141 vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~--~~ll~~a 218 (239)
+.+ .++...+|+++++.|+|||++++.-...+ .|. . .+.++.+- .+.++++
T Consensus 134 ~~~---~~~~~~~l~~~~r~LkpgG~l~i~~~~~~--------------~~~-----~-----~~~~~~~~~~~~~l~~~ 186 (210)
T 1nt2_A 134 IAQ---KNQIEILKANAEFFLKEKGEVVIMVKARS--------------IDS-----T-----AEPEEVFKSVLKEMEGD 186 (210)
T ss_dssp CCS---TTHHHHHHHHHHHHEEEEEEEEEEEEHHH--------------HCT-----T-----SCHHHHHHHHHHHHHTT
T ss_pred ccC---hhHHHHHHHHHHHHhCCCCEEEEEEecCC--------------ccc-----c-----CCHHHHHHHHHHHHHhh
Confidence 332 23445679999999999999999721110 000 0 11222200 2237888
Q ss_pred CCceeeEEEcC---CceeEEEEEC
Q 045543 219 GFKGVNYESFV---CNFYIMEFIK 239 (239)
Q Consensus 219 Gf~~~~~~~~~---~~~~vie~~k 239 (239)
|++++..... ..+.++.++|
T Consensus 187 -f~~~~~~~~~p~~~~h~~~~~~~ 209 (210)
T 1nt2_A 187 -FKIVKHGSLMPYHRDHIFIHAYR 209 (210)
T ss_dssp -SEEEEEEECTTTCTTEEEEEEEE
T ss_pred -cEEeeeecCCCCCCCcEEEEEEc
Confidence 9999988773 3567777764
No 121
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=98.24 E-value=5.6e-07 Score=71.94 Aligned_cols=63 Identities=10% Similarity=0.157 Sum_probs=48.8
Q ss_pred CCcceEEEeCCCCCC-----------------------------------Cc-----cccccccCC-c-ceeeechhhhc
Q 045543 107 EKIKQLVDVGGGCGK-----------------------------------CG-----WKMFQKILN-G-DAILMKLILRN 144 (239)
Q Consensus 107 ~~~~~vlDvGGG~G~-----------------------------------~~-----gD~~~~~p~-~-D~~~l~~vlH~ 144 (239)
....+|||+|||.|. .. .|..+..|. . |++++.++||.
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~~~~~~~DvVLa~k~LHl 127 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESDVYKGTYDVVFLLKMLPV 127 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHHHTTSEEEEEEEETCHHH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEecccccCCCCCcChhhHhhHHHh
Confidence 567899999999999 22 244443343 3 99999999999
Q ss_pred CChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543 145 WDDEHCLSLLKNCYEAIPGNGKIIIID 171 (239)
Q Consensus 145 ~~d~~~~~iL~~~~~aL~pgg~lli~d 171 (239)
. ++ -...+.+++++|+|||.++..+
T Consensus 128 L-~~-~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 128 L-KQ-QDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp H-HH-TTCCHHHHHHTCEEEEEEEEEE
T ss_pred h-hh-hHHHHHHHHHHhCCCCEEEEeC
Confidence 9 33 3566669999999999888877
No 122
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=98.21 E-value=3.8e-06 Score=71.50 Aligned_cols=115 Identities=9% Similarity=0.136 Sum_probs=70.1
Q ss_pred HHHHhhccCCC-CcceEEEeCCCCCC-----------------C-------------------cccccc----ccCC--c
Q 045543 97 NRILDYYKGFE-KIKQLVDVGGGCGK-----------------C-------------------GWKMFQ----KILN--G 133 (239)
Q Consensus 97 ~~~~~~~~~~~-~~~~vlDvGGG~G~-----------------~-------------------~gD~~~----~~p~--~ 133 (239)
..+++.+. .. ...++||||||+|. + ..|+.. .+|. .
T Consensus 74 ~~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~f 152 (291)
T 3hp7_A 74 EKALAVFN-LSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLP 152 (291)
T ss_dssp HHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCC
T ss_pred HHHHHhcC-CCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCC
Confidence 34555665 44 45799999999998 0 112211 2343 3
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCC-hhhhhhhhhhHHHhhccCCccccChhhccHH
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEAT-PATREASSIDIIMLMQLSGEKERTKQEYYGM 212 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~-~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~ 212 (239)
|++++...+|++ ..+|+.+++.|+|||++++.- -|+-...+ .........|-. -..++.+++ .
T Consensus 153 D~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~lv--kPqfe~~~~~~~~~G~vrd~~-------~~~~~~~~v--~ 216 (291)
T 3hp7_A 153 SFASIDVSFISL-----NLILPALAKILVDGGQVVALV--KPQFEAGREQIGKNGIVRESS-------IHEKVLETV--T 216 (291)
T ss_dssp SEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE--CGGGTSCGGGCC-CCCCCCHH-------HHHHHHHHH--H
T ss_pred CEEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEEE--CcccccChhhcCCCCccCCHH-------HHHHHHHHH--H
Confidence 888888888765 578999999999999999861 11110000 000000001110 012366778 9
Q ss_pred HHHhhCCCceeeEEEc
Q 045543 213 ALTAKNGFKGVNYESF 228 (239)
Q Consensus 213 ~ll~~aGf~~~~~~~~ 228 (239)
++++++||++..+...
T Consensus 217 ~~~~~~Gf~v~~~~~s 232 (291)
T 3hp7_A 217 AFAVDYGFSVKGLDFS 232 (291)
T ss_dssp HHHHHTTEEEEEEEEC
T ss_pred HHHHHCCCEEEEEEEC
Confidence 9999999999887654
No 123
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=98.20 E-value=4.3e-06 Score=68.93 Aligned_cols=117 Identities=14% Similarity=0.126 Sum_probs=68.7
Q ss_pred HHHHhhccC--CCCcceEEEeCCCCCC----------------------------------------Cccccccc-----
Q 045543 97 NRILDYYKG--FEKIKQLVDVGGGCGK----------------------------------------CGWKMFQK----- 129 (239)
Q Consensus 97 ~~~~~~~~~--~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~~----- 129 (239)
..++..++. +.+..+|||+|||+|. +.+|...+
T Consensus 63 ~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~ 142 (232)
T 3id6_C 63 GAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKS 142 (232)
T ss_dssp HHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTT
T ss_pred HHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhc
Confidence 344444431 6678999999999999 23444331
Q ss_pred cCC-cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhh
Q 045543 130 ILN-GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQE 208 (239)
Q Consensus 130 ~p~-~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e 208 (239)
++. .|++++.-.. + +....+++++++.|+|||+|++.-.... .|... .-.+ ..++
T Consensus 143 ~~~~~D~I~~d~a~---~-~~~~il~~~~~~~LkpGG~lvisik~~~--------------~d~t~-----~~~e-~~~~ 198 (232)
T 3id6_C 143 VVENVDVLYVDIAQ---P-DQTDIAIYNAKFFLKVNGDMLLVIKARS--------------IDVTK-----DPKE-IYKT 198 (232)
T ss_dssp TCCCEEEEEECCCC---T-THHHHHHHHHHHHEEEEEEEEEEEC---------------------C-----CSSS-STTH
T ss_pred cccceEEEEecCCC---h-hHHHHHHHHHHHhCCCCeEEEEEEccCC--------------cccCC-----CHHH-HHHH
Confidence 122 3888765332 2 2333455667779999999999732111 11110 1111 1233
Q ss_pred ccHHHHHhhCCCceeeEEEcC---CceeEEEEEC
Q 045543 209 YYGMALTAKNGFKGVNYESFV---CNFYIMEFIK 239 (239)
Q Consensus 209 ~~~~~ll~~aGf~~~~~~~~~---~~~~vie~~k 239 (239)
. ...|+++||++.+...+. ..+.++.++|
T Consensus 199 ~--~~~L~~~gf~~~~~~~l~p~~~~h~~v~~~~ 230 (232)
T 3id6_C 199 E--VEKLENSNFETIQIINLDPYDKDHAIVLSKY 230 (232)
T ss_dssp H--HHHHHHTTEEEEEEEECTTTCSSCEEEEEEE
T ss_pred H--HHHHHHCCCEEEEEeccCCCcCceEEEEEEe
Confidence 3 667888999999988874 3577777764
No 124
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=98.20 E-value=5.8e-06 Score=68.76 Aligned_cols=102 Identities=12% Similarity=0.071 Sum_probs=65.9
Q ss_pred CC-CcceEEEeCCCCCC-----------------------------------------Cccccccc---cCC-c-ceeee
Q 045543 106 FE-KIKQLVDVGGGCGK-----------------------------------------CGWKMFQK---ILN-G-DAILM 138 (239)
Q Consensus 106 ~~-~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~---~p~-~-D~~~l 138 (239)
.. +..+|||+|||+|. +.+|+.+. ++. . |+|++
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~ 125 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTC 125 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEE
Confidence 66 77899999999998 45666652 333 3 99998
Q ss_pred chhhhcC------------------ChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCC
Q 045543 139 KLILRNW------------------DDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSG 200 (239)
Q Consensus 139 ~~vlH~~------------------~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~ 200 (239)
.--++.. .......+++.+++.|+|||+++++ .+..
T Consensus 126 npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~---~~~~----------------------- 179 (259)
T 3lpm_A 126 NPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFV---HRPE----------------------- 179 (259)
T ss_dssp CCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEE---ECTT-----------------------
T ss_pred CCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEE---EcHH-----------------------
Confidence 4332211 1234568999999999999999984 1111
Q ss_pred ccccChhhccHHHHHhhCCCceeeEEEcC------CceeEEEEEC
Q 045543 201 EKERTKQEYYGMALTAKNGFKGVNYESFV------CNFYIMEFIK 239 (239)
Q Consensus 201 g~~rt~~e~~~~~ll~~aGf~~~~~~~~~------~~~~vie~~k 239 (239)
...++ .+++++.||...++..+. ....+++++|
T Consensus 180 ----~~~~~--~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~~~k 218 (259)
T 3lpm_A 180 ----RLLDI--IDIMRKYRLEPKRIQFVHPRSDREANTVLVEGIK 218 (259)
T ss_dssp ----THHHH--HHHHHHTTEEEEEEEEEESSTTSCCSEEEEEEEE
T ss_pred ----HHHHH--HHHHHHCCCceEEEEEeecCCCCCcEEEEEEEEe
Confidence 22345 666777788777665531 2356666654
No 125
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=98.19 E-value=1.3e-06 Score=76.99 Aligned_cols=73 Identities=15% Similarity=0.214 Sum_probs=55.1
Q ss_pred HHHhhccCCCCcceEEEeCCCCCC--------------------------------------------CccccccccCC-
Q 045543 98 RILDYYKGFEKIKQLVDVGGGCGK--------------------------------------------CGWKMFQKILN- 132 (239)
Q Consensus 98 ~~~~~~~~~~~~~~vlDvGGG~G~--------------------------------------------~~gD~~~~~p~- 132 (239)
.+++.++ .....+|+|+|||+|. +.+|++++++.
T Consensus 213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~ 291 (375)
T 4dcm_A 213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 291 (375)
T ss_dssp HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTT
T ss_pred HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCC
Confidence 4566666 4555899999999999 34566666664
Q ss_pred c-ceeeechhhhc---CChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543 133 G-DAILMKLILRN---WDDEHCLSLLKNCYEAIPGNGKIIIID 171 (239)
Q Consensus 133 ~-D~~~l~~vlH~---~~d~~~~~iL~~~~~aL~pgg~lli~d 171 (239)
. |+|++.-.+|. .++....++++++++.|+|||+++|+.
T Consensus 292 ~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~ 334 (375)
T 4dcm_A 292 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 334 (375)
T ss_dssp CEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 3 99999988885 456667789999999999999999964
No 126
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=98.19 E-value=8.6e-07 Score=77.32 Aligned_cols=73 Identities=21% Similarity=0.147 Sum_probs=57.1
Q ss_pred HHHHhhccCCCCcceEEEeCCCCCC----------------------------------------Ccccccc-ccCCc-c
Q 045543 97 NRILDYYKGFEKIKQLVDVGGGCGK----------------------------------------CGWKMFQ-KILNG-D 134 (239)
Q Consensus 97 ~~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~-~~p~~-D 134 (239)
..+.+.+. ..+..+|||||||+|. +.+|+.+ +.|.. |
T Consensus 40 ~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D 118 (348)
T 2y1w_A 40 RAILQNHT-DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVD 118 (348)
T ss_dssp HHHHHTGG-GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEE
T ss_pred HHHHhccc-cCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCcee
Confidence 35555555 5567899999999998 2345544 44544 9
Q ss_pred eeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEE
Q 045543 135 AILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIII 170 (239)
Q Consensus 135 ~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~ 170 (239)
+|++..++|++..+.....+.++++.|+|||++++.
T Consensus 119 ~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 119 IIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp EEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred EEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 999999999898887888999999999999999853
No 127
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=98.16 E-value=1.7e-06 Score=71.28 Aligned_cols=67 Identities=13% Similarity=0.108 Sum_probs=39.6
Q ss_pred HHHHHHHHhhCCCCceEEEEeeecCCCCCCC-hhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEc
Q 045543 151 LSLLKNCYEAIPGNGKIIIIDSTTVVIPEAT-PATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESF 228 (239)
Q Consensus 151 ~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~-~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~ 228 (239)
..+|+++++.|+|||++++.- .+...... .........|-. ...++.+++ .++++++||++..+...
T Consensus 117 ~~~l~~i~rvLkpgG~lv~~~--~p~~e~~~~~~~~~G~~~d~~-------~~~~~~~~l--~~~l~~aGf~v~~~~~~ 184 (232)
T 3opn_A 117 DLILPPLYEILEKNGEVAALI--KPQFEAGREQVGKNGIIRDPK-------VHQMTIEKV--LKTATQLGFSVKGLTFS 184 (232)
T ss_dssp GGTHHHHHHHSCTTCEEEEEE--CHHHHSCHHHHC-CCCCCCHH-------HHHHHHHHH--HHHHHHHTEEEEEEEEC
T ss_pred HHHHHHHHHhccCCCEEEEEE--CcccccCHHHhCcCCeecCcc-------hhHHHHHHH--HHHHHHCCCEEEEEEEc
Confidence 579999999999999999842 11000000 000000000110 112367888 99999999999887654
No 128
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=98.14 E-value=1.1e-06 Score=79.95 Aligned_cols=72 Identities=21% Similarity=0.152 Sum_probs=58.6
Q ss_pred HHHHhhccCCCCcceEEEeCCCCCC----------------------------------------Ccccccc-ccCCc-c
Q 045543 97 NRILDYYKGFEKIKQLVDVGGGCGK----------------------------------------CGWKMFQ-KILNG-D 134 (239)
Q Consensus 97 ~~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~-~~p~~-D 134 (239)
..+++.++ ..+..+|||||||+|. +.+|+++ ++|.. |
T Consensus 148 ~~il~~l~-~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~fD 226 (480)
T 3b3j_A 148 RAILQNHT-DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVD 226 (480)
T ss_dssp HHHHHTGG-GTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEE
T ss_pred HHHHHhhh-hcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCCeE
Confidence 45566665 5566899999999998 4566666 55554 9
Q ss_pred eeeechhhhcCChhHHHHHHHHHHhhCCCCceEEE
Q 045543 135 AILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIII 169 (239)
Q Consensus 135 ~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli 169 (239)
+|++..++|++.+++....+.++++.|+|||++++
T Consensus 227 ~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 227 IIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp EEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred EEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 99998888999888888999999999999999985
No 129
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=98.11 E-value=4e-06 Score=64.40 Aligned_cols=76 Identities=13% Similarity=0.129 Sum_probs=55.1
Q ss_pred HHHhhccCCCCcceEEEeCCCCCC-------------------------------Ccccccc-c--------cCC-c-ce
Q 045543 98 RILDYYKGFEKIKQLVDVGGGCGK-------------------------------CGWKMFQ-K--------ILN-G-DA 135 (239)
Q Consensus 98 ~~~~~~~~~~~~~~vlDvGGG~G~-------------------------------~~gD~~~-~--------~p~-~-D~ 135 (239)
.+++.+....+..+|||+|||+|. +.+|+.+ + ++. . |+
T Consensus 12 ~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~ 91 (180)
T 1ej0_A 12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQV 91 (180)
T ss_dssp HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccccCcEEEEEcccccchhhhhhhccCCCCceeE
Confidence 445555434566899999999997 1345554 3 553 3 99
Q ss_pred eeechhhhcCChhH---------HHHHHHHHHhhCCCCceEEEEeee
Q 045543 136 ILMKLILRNWDDEH---------CLSLLKNCYEAIPGNGKIIIIDST 173 (239)
Q Consensus 136 ~~l~~vlH~~~d~~---------~~~iL~~~~~aL~pgg~lli~d~~ 173 (239)
|++...+|...+.. ...+++++++.|+|||++++....
T Consensus 92 i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (180)
T 1ej0_A 92 VMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp EEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred EEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 99998888665431 168999999999999999987653
No 130
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=98.10 E-value=5.7e-06 Score=79.14 Aligned_cols=38 Identities=5% Similarity=0.102 Sum_probs=34.6
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEee
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDS 172 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~ 172 (239)
|+|++..++|+++++....+++++++.|+|| .++|...
T Consensus 798 DlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTP 835 (950)
T 3htx_A 798 DIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTP 835 (950)
T ss_dssp CEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred eEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEec
Confidence 9999999999999999889999999999999 6766554
No 131
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=98.09 E-value=2.3e-06 Score=70.38 Aligned_cols=87 Identities=18% Similarity=0.261 Sum_probs=60.0
Q ss_pred CCCcceEEEeCCCCCC-----------------------------------------Ccccccc-cc----CCc-ceeee
Q 045543 106 FEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQ-KI----LNG-DAILM 138 (239)
Q Consensus 106 ~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~-~~----p~~-D~~~l 138 (239)
+.+..+|||||||+|. +.+|+.+ +. +.. |+|++
T Consensus 68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~ 147 (240)
T 1xdz_A 68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (240)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred cCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEE
Confidence 4567899999999998 3344433 22 223 99998
Q ss_pred chhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhC
Q 045543 139 KLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKN 218 (239)
Q Consensus 139 ~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~a 218 (239)
..+ .+ ...+++.+++.|+|||++++.+... . .. ..+++ .+.++++
T Consensus 148 ~~~----~~--~~~~l~~~~~~LkpgG~l~~~~g~~-----~------~~----------------~~~~~--~~~l~~~ 192 (240)
T 1xdz_A 148 RAV----AR--LSVLSELCLPLVKKNGLFVALKAAS-----A------EE----------------ELNAG--KKAITTL 192 (240)
T ss_dssp ECC----SC--HHHHHHHHGGGEEEEEEEEEEECC------C------HH----------------HHHHH--HHHHHHT
T ss_pred ecc----CC--HHHHHHHHHHhcCCCCEEEEEeCCC-----c------hH----------------HHHHH--HHHHHHc
Confidence 774 22 4689999999999999998863110 0 00 12456 7788999
Q ss_pred CCceeeEEE
Q 045543 219 GFKGVNYES 227 (239)
Q Consensus 219 Gf~~~~~~~ 227 (239)
||++.++..
T Consensus 193 g~~~~~~~~ 201 (240)
T 1xdz_A 193 GGELENIHS 201 (240)
T ss_dssp TEEEEEEEE
T ss_pred CCeEeEEEE
Confidence 999887654
No 132
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=98.08 E-value=8.6e-07 Score=73.31 Aligned_cols=68 Identities=15% Similarity=0.239 Sum_probs=52.4
Q ss_pred HHHHHhhccCCCCcceEEEeCCCCCC-------------------------------------------CccccccccCC
Q 045543 96 MNRILDYYKGFEKIKQLVDVGGGCGK-------------------------------------------CGWKMFQKILN 132 (239)
Q Consensus 96 ~~~~~~~~~~~~~~~~vlDvGGG~G~-------------------------------------------~~gD~~~~~p~ 132 (239)
+..++..++ ..+..+|||+|||+|. +.+|+.+.++.
T Consensus 82 ~~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 160 (255)
T 3mb5_A 82 AALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEE 160 (255)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCC
T ss_pred HHHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCC
Confidence 445666666 7788999999999998 34566665664
Q ss_pred --cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543 133 --GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIID 171 (239)
Q Consensus 133 --~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d 171 (239)
.|++++ ++++. ..+|++++++|+|||++++..
T Consensus 161 ~~~D~v~~-----~~~~~--~~~l~~~~~~L~~gG~l~~~~ 194 (255)
T 3mb5_A 161 ENVDHVIL-----DLPQP--ERVVEHAAKALKPGGFFVAYT 194 (255)
T ss_dssp CSEEEEEE-----CSSCG--GGGHHHHHHHEEEEEEEEEEE
T ss_pred CCcCEEEE-----CCCCH--HHHHHHHHHHcCCCCEEEEEE
Confidence 398886 45544 478999999999999999875
No 133
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=98.08 E-value=7.1e-06 Score=64.93 Aligned_cols=69 Identities=16% Similarity=0.137 Sum_probs=49.3
Q ss_pred CCCcceEEEeCCCCCC-------------------------------------------Ccccccc-c-cC-Cc-ceeee
Q 045543 106 FEKIKQLVDVGGGCGK-------------------------------------------CGWKMFQ-K-IL-NG-DAILM 138 (239)
Q Consensus 106 ~~~~~~vlDvGGG~G~-------------------------------------------~~gD~~~-~-~p-~~-D~~~l 138 (239)
..+..+|||+|||+|. +.+|+.+ + .+ .. |++++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 4566899999999997 3455543 1 22 33 99988
Q ss_pred chhhh-------cCChhHHHHHHHHHHhhCCCCceEEEEeeec
Q 045543 139 KLILR-------NWDDEHCLSLLKNCYEAIPGNGKIIIIDSTT 174 (239)
Q Consensus 139 ~~vlH-------~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~ 174 (239)
...+. ....++...+++++.+.|+|||++++..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 142 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG 142 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence 76541 1223455689999999999999999987543
No 134
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=98.08 E-value=2.6e-06 Score=68.19 Aligned_cols=66 Identities=14% Similarity=0.216 Sum_probs=50.7
Q ss_pred HHHHhhccCCCCcceEEEeCCCCCC---------------------------------------CccccccccC-C-c-c
Q 045543 97 NRILDYYKGFEKIKQLVDVGGGCGK---------------------------------------CGWKMFQKIL-N-G-D 134 (239)
Q Consensus 97 ~~~~~~~~~~~~~~~vlDvGGG~G~---------------------------------------~~gD~~~~~p-~-~-D 134 (239)
..+++.++ ..+..+|||||||+|. +.+|..+..+ . . |
T Consensus 67 ~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (210)
T 3lbf_A 67 ARMTELLE-LTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFD 145 (210)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEE
T ss_pred HHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCcc
Confidence 34455566 6778899999999998 3456655333 2 3 9
Q ss_pred eeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543 135 AILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIID 171 (239)
Q Consensus 135 ~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d 171 (239)
+|++..++|++++ ++++.|+|||++++.-
T Consensus 146 ~i~~~~~~~~~~~--------~~~~~L~pgG~lv~~~ 174 (210)
T 3lbf_A 146 AIIVTAAPPEIPT--------ALMTQLDEGGILVLPV 174 (210)
T ss_dssp EEEESSBCSSCCT--------HHHHTEEEEEEEEEEE
T ss_pred EEEEccchhhhhH--------HHHHhcccCcEEEEEE
Confidence 9999999999886 4788999999999864
No 135
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=98.07 E-value=1.7e-06 Score=72.72 Aligned_cols=68 Identities=13% Similarity=0.130 Sum_probs=46.1
Q ss_pred HHHHHhhccCCCCcceEEEeCCCCCC----------------------------------C---------ccccccccCC
Q 045543 96 MNRILDYYKGFEKIKQLVDVGGGCGK----------------------------------C---------GWKMFQKILN 132 (239)
Q Consensus 96 ~~~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------~---------~gD~~~~~p~ 132 (239)
+..+++.++ +.+..+|||+|||+|. . .+|+.++++.
T Consensus 99 ~~~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~ 177 (275)
T 1yb2_A 99 ASYIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISD 177 (275)
T ss_dssp -------CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCS
T ss_pred HHHHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcC
Confidence 345666666 7788999999999997 1 1334344443
Q ss_pred --cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543 133 --GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIID 171 (239)
Q Consensus 133 --~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d 171 (239)
.|+|++ ++++. ..+|+++++.|+|||++++..
T Consensus 178 ~~fD~Vi~-----~~~~~--~~~l~~~~~~LkpgG~l~i~~ 211 (275)
T 1yb2_A 178 QMYDAVIA-----DIPDP--WNHVQKIASMMKPGSVATFYL 211 (275)
T ss_dssp CCEEEEEE-----CCSCG--GGSHHHHHHTEEEEEEEEEEE
T ss_pred CCccEEEE-----cCcCH--HHHHHHHHHHcCCCCEEEEEe
Confidence 398887 44544 488999999999999999976
No 136
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=98.06 E-value=3.7e-06 Score=70.33 Aligned_cols=99 Identities=9% Similarity=0.070 Sum_probs=68.4
Q ss_pred CCcceEEEeCCCCCC----------------------------------------CccccccccC-C-cceeeechhhhc
Q 045543 107 EKIKQLVDVGGGCGK----------------------------------------CGWKMFQKIL-N-GDAILMKLILRN 144 (239)
Q Consensus 107 ~~~~~vlDvGGG~G~----------------------------------------~~gD~~~~~p-~-~D~~~l~~vlH~ 144 (239)
....+|+|||||.|. ...|+..+.| . +|++++.-++|.
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 457899999999999 3345555344 3 499999999999
Q ss_pred CChhHHHHHHHHHHhhCCCCceEEEEee--ecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCce
Q 045543 145 WDDEHCLSLLKNCYEAIPGNGKIIIIDS--TTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKG 222 (239)
Q Consensus 145 ~~d~~~~~iL~~~~~aL~pgg~lli~d~--~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~ 222 (239)
..++.-...+ ++.++|+|+|.++..+. +-..++. |+ +.-.+.| ++++.+.|..
T Consensus 211 Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs~g----------m~-----------~~Y~~~~--e~~~~~~g~~- 265 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRSKG----------MF-----------QNYSQSF--ESQARERSCR- 265 (281)
T ss_dssp HHHHSTTHHH-HHHHHSSCSEEEEEEECC-------C----------HH-----------HHHHHHH--HHHHHHHTCC-
T ss_pred hhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCCcc----------hh-----------hHHHHHH--HHHHHhcCCc-
Confidence 9888777777 99999999998888776 3222211 11 1123577 8888888984
Q ss_pred eeEEEcCC
Q 045543 223 VNYESFVC 230 (239)
Q Consensus 223 ~~~~~~~~ 230 (239)
++...+++
T Consensus 266 ~~~~~~~n 273 (281)
T 3lcv_B 266 IQRLEIGN 273 (281)
T ss_dssp EEEEEETT
T ss_pred eeeeeecC
Confidence 44444444
No 137
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=98.01 E-value=6.5e-06 Score=70.43 Aligned_cols=68 Identities=12% Similarity=0.154 Sum_probs=43.9
Q ss_pred ceeeechhhhcCChhHH--HHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccH
Q 045543 134 DAILMKLILRNWDDEHC--LSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYG 211 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~--~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~ 211 (239)
|+|++....+.+++... ..++++++++|+|||++++... . + +++ ..+..++
T Consensus 171 DvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~----~---~-------~~~-----------~~~~~~~-- 223 (304)
T 3bwc_A 171 DVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGE----S---I-------WLD-----------LELIEKM-- 223 (304)
T ss_dssp EEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEEC----C---T-------TTC-----------HHHHHHH--
T ss_pred eEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecC----C---c-------ccc-----------hHHHHHH--
Confidence 99999777666554433 5899999999999999988631 1 0 011 1134567
Q ss_pred HHHHhhCCCceeeEEEc
Q 045543 212 MALTAKNGFKGVNYESF 228 (239)
Q Consensus 212 ~~ll~~aGf~~~~~~~~ 228 (239)
.+.++++||..+++...
T Consensus 224 ~~~l~~~GF~~v~~~~~ 240 (304)
T 3bwc_A 224 SRFIRETGFASVQYALM 240 (304)
T ss_dssp HHHHHHHTCSEEEEEEC
T ss_pred HHHHHhCCCCcEEEEEe
Confidence 88899999998887653
No 138
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=98.00 E-value=5.3e-06 Score=65.03 Aligned_cols=40 Identities=13% Similarity=0.165 Sum_probs=27.9
Q ss_pred ceeeec-hhhhcC------ChhHHHHHHHHHHhhCCCCceEEEEeee
Q 045543 134 DAILMK-LILRNW------DDEHCLSLLKNCYEAIPGNGKIIIIDST 173 (239)
Q Consensus 134 D~~~l~-~vlH~~------~d~~~~~iL~~~~~aL~pgg~lli~d~~ 173 (239)
|++++. ..++.- ..++...+|+++++.|+|||++++..+.
T Consensus 91 D~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 91 RAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp EEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred CEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 999876 333320 2355678899999999999999998654
No 139
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=97.98 E-value=1.1e-05 Score=72.29 Aligned_cols=42 Identities=24% Similarity=0.212 Sum_probs=34.0
Q ss_pred cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCC
Q 045543 133 GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVI 177 (239)
Q Consensus 133 ~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~ 177 (239)
.|+|++.++++ . ++....|+++.+.|+|||+|++.+.+.+..
T Consensus 324 FDvIvvn~~l~--~-~d~~~~L~el~r~LKpGG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 324 CDVILVNNFLF--D-EDLNKKVEKILQTAKVGCKIISLKSLRSLT 365 (433)
T ss_dssp CSEEEECCTTC--C-HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred CCEEEEeCccc--c-ccHHHHHHHHHHhCCCCeEEEEeeccCCcc
Confidence 39999887773 2 345678899999999999999998776654
No 140
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=97.97 E-value=3.8e-05 Score=67.57 Aligned_cols=97 Identities=8% Similarity=0.072 Sum_probs=58.6
Q ss_pred ccc-ccCCc--ceeeechhhhcCCh------------------------------------hHHHHHHHHHHhhCCCCce
Q 045543 126 MFQ-KILNG--DAILMKLILRNWDD------------------------------------EHCLSLLKNCYEAIPGNGK 166 (239)
Q Consensus 126 ~~~-~~p~~--D~~~l~~vlH~~~d------------------------------------~~~~~iL~~~~~aL~pgg~ 166 (239)
|+. .+|.. |+++.+..||-.++ ++-..+|+..++.|+|||+
T Consensus 141 Fy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~ 220 (374)
T 3b5i_A 141 FYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGA 220 (374)
T ss_dssp TTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred hhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 444 45653 99999999996551 1445679999999999999
Q ss_pred EEEEeeecCCCCCCChhhhhhhhh-hH-----HHhhccCCc--------------cccChhhccHHHHHh-hCCCceeeE
Q 045543 167 IIIIDSTTVVIPEATPATREASSI-DI-----IMLMQLSGE--------------KERTKQEYYGMALTA-KNGFKGVNY 225 (239)
Q Consensus 167 lli~d~~~~~~~~~~~~~~~~~~~-dl-----~ml~~~~~g--------------~~rt~~e~~~~~ll~-~aGf~~~~~ 225 (239)
+++.=.-.++. .+.........+ ++ .-|+ ..| ..+|.+|+ +++++ +.||++.++
T Consensus 221 mvl~~~gr~~~-~~~~~~~~~~~~~~~l~~al~~l~--~eG~i~~e~~d~f~~P~y~ps~~E~--~~~l~~~~~F~I~~l 295 (374)
T 3b5i_A 221 MFLVCLGRTSV-DPTDQGGAGLLFGTHFQDAWDDLV--REGLVAAEKRDGFNIPVYAPSLQDF--KEVVDANGSFAIDKL 295 (374)
T ss_dssp EEEEEEECCCS-STTCCHHHHHHHSSHHHHHHHHTT--SSSSSCHHHHSSCCCCBCCCCHHHH--HHHHHHHCSEEEEEE
T ss_pred EEEEEecCCCC-ccccccchhhHHHHHHHHHHHHHH--HhCCcchhhcccCCccccCCCHHHH--HHHHHhcCCcEEEEE
Confidence 98865433332 110000000111 11 1111 122 23689999 99998 599998776
Q ss_pred EE
Q 045543 226 ES 227 (239)
Q Consensus 226 ~~ 227 (239)
..
T Consensus 296 e~ 297 (374)
T 3b5i_A 296 VV 297 (374)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 141
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=97.96 E-value=2.3e-07 Score=76.90 Aligned_cols=85 Identities=9% Similarity=-0.037 Sum_probs=46.4
Q ss_pred ceeeechhhhcCCh-------------hHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCC
Q 045543 134 DAILMKLILRNWDD-------------EHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSG 200 (239)
Q Consensus 134 D~~~l~~vlH~~~d-------------~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~ 200 (239)
|+|++.-.+|...+ +....+++++++.|+|||++.+++.+..... . ......++. ...
T Consensus 142 D~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~------~--~l~~~g~~~-~~~ 212 (254)
T 2h00_A 142 DFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSL------Q--LKKRLRWYS-CML 212 (254)
T ss_dssp SEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHH------H--HGGGBSCEE-EEE
T ss_pred cEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHH------h--cccceEEEE-ECC
Confidence 99998755554331 1123678899999999999988875443210 0 000000111 112
Q ss_pred ccccChhhccHHHHHhhCCCceeeEEEcC
Q 045543 201 EKERTKQEYYGMALTAKNGFKGVNYESFV 229 (239)
Q Consensus 201 g~~rt~~e~~~~~ll~~aGf~~~~~~~~~ 229 (239)
+...+.+++ .++|+++||+.+++....
T Consensus 213 ~~~~~~~~~--~~~l~~~Gf~~v~~~~~~ 239 (254)
T 2h00_A 213 GKKCSLAPL--KEELRIQGVPKVTYTEFC 239 (254)
T ss_dssp SSTTSHHHH--HHHHHHTTCSEEEEEEEE
T ss_pred CChhHHHHH--HHHHHHcCCCceEEEEEe
Confidence 334455778 999999999998877653
No 142
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=97.96 E-value=6.5e-06 Score=72.73 Aligned_cols=64 Identities=13% Similarity=0.163 Sum_probs=51.7
Q ss_pred CcceEEEeCCCCCC--------------------------------------Cccccccc-cC-Cc-ceeeechhhhc--
Q 045543 108 KIKQLVDVGGGCGK--------------------------------------CGWKMFQK-IL-NG-DAILMKLILRN-- 144 (239)
Q Consensus 108 ~~~~vlDvGGG~G~--------------------------------------~~gD~~~~-~p-~~-D~~~l~~vlH~-- 144 (239)
+..+|||+|||+|. +.+|+++. .+ .. |+|++.-.+|.
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~~ 312 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHVGG 312 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCTTC
T ss_pred CCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhhcc
Confidence 45799999999999 45666663 33 23 99999999987
Q ss_pred -CChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543 145 -WDDEHCLSLLKNCYEAIPGNGKIIIID 171 (239)
Q Consensus 145 -~~d~~~~~iL~~~~~aL~pgg~lli~d 171 (239)
...+....+++++++.|+|||+++|+-
T Consensus 313 ~~~~~~~~~~l~~~~~~LkpGG~l~iv~ 340 (381)
T 3dmg_A 313 AVILDVAQAFVNVAAARLRPGGVFFLVS 340 (381)
T ss_dssp SSCCHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence 445677899999999999999999963
No 143
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=97.95 E-value=1.5e-05 Score=64.06 Aligned_cols=66 Identities=17% Similarity=0.127 Sum_probs=48.2
Q ss_pred HHHhhccCCCCcceEEEeCCCCCC----------------------------------------CccccccccC---Ccc
Q 045543 98 RILDYYKGFEKIKQLVDVGGGCGK----------------------------------------CGWKMFQKIL---NGD 134 (239)
Q Consensus 98 ~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~~~p---~~D 134 (239)
.++..++ ..+..+|||||||+|. +.+|+.+.++ ..|
T Consensus 46 ~~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D 124 (204)
T 3njr_A 46 LTLAALA-PRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPE 124 (204)
T ss_dssp HHHHHHC-CCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCS
T ss_pred HHHHhcC-CCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCC
Confidence 3455566 6777899999999998 2345554233 239
Q ss_pred eeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543 135 AILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIID 171 (239)
Q Consensus 135 ~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d 171 (239)
++++...+ + .. +++++++.|+|||++++..
T Consensus 125 ~v~~~~~~----~--~~-~l~~~~~~LkpgG~lv~~~ 154 (204)
T 3njr_A 125 AVFIGGGG----S--QA-LYDRLWEWLAPGTRIVANA 154 (204)
T ss_dssp EEEECSCC----C--HH-HHHHHHHHSCTTCEEEEEE
T ss_pred EEEECCcc----c--HH-HHHHHHHhcCCCcEEEEEe
Confidence 99977644 2 23 8999999999999998854
No 144
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=97.95 E-value=6.9e-06 Score=66.67 Aligned_cols=67 Identities=16% Similarity=0.125 Sum_probs=50.2
Q ss_pred HHHHhhccCCCCcceEEEeCCCCCC-------------------------------------CccccccccC-C-c-cee
Q 045543 97 NRILDYYKGFEKIKQLVDVGGGCGK-------------------------------------CGWKMFQKIL-N-G-DAI 136 (239)
Q Consensus 97 ~~~~~~~~~~~~~~~vlDvGGG~G~-------------------------------------~~gD~~~~~p-~-~-D~~ 136 (239)
..+++.+. ..+..+|||||||+|. +.+|+.+..+ . . |+|
T Consensus 60 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 138 (231)
T 1vbf_A 60 IFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRV 138 (231)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEE
T ss_pred HHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEE
Confidence 34555555 6677899999999998 2345544333 2 3 999
Q ss_pred eechhhhcCChhHHHHHHHHHHhhCCCCceEEEEee
Q 045543 137 LMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDS 172 (239)
Q Consensus 137 ~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~ 172 (239)
++..++|++.+ ++.+.|+|||++++...
T Consensus 139 ~~~~~~~~~~~--------~~~~~L~pgG~l~~~~~ 166 (231)
T 1vbf_A 139 VVWATAPTLLC--------KPYEQLKEGGIMILPIG 166 (231)
T ss_dssp EESSBBSSCCH--------HHHHTEEEEEEEEEEEC
T ss_pred EECCcHHHHHH--------HHHHHcCCCcEEEEEEc
Confidence 99999998874 57889999999999753
No 145
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=97.94 E-value=7.3e-06 Score=65.78 Aligned_cols=65 Identities=12% Similarity=0.142 Sum_probs=49.2
Q ss_pred HHHhhccCCCCcceEEEeCCCCCC------------------------------------------CccccccccC-C-c
Q 045543 98 RILDYYKGFEKIKQLVDVGGGCGK------------------------------------------CGWKMFQKIL-N-G 133 (239)
Q Consensus 98 ~~~~~~~~~~~~~~vlDvGGG~G~------------------------------------------~~gD~~~~~p-~-~ 133 (239)
.+++.+. ..+..+|||||||+|. ..+|+..+++ . .
T Consensus 68 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 146 (215)
T 2yxe_A 68 MMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAP 146 (215)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCC
T ss_pred HHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCC
Confidence 4445555 6677899999999997 2345544444 2 3
Q ss_pred -ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543 134 -DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIID 171 (239)
Q Consensus 134 -D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d 171 (239)
|+|++..++|++++ ++++.|+|||++++.-
T Consensus 147 fD~v~~~~~~~~~~~--------~~~~~L~pgG~lv~~~ 177 (215)
T 2yxe_A 147 YDRIYTTAAGPKIPE--------PLIRQLKDGGKLLMPV 177 (215)
T ss_dssp EEEEEESSBBSSCCH--------HHHHTEEEEEEEEEEE
T ss_pred eeEEEECCchHHHHH--------HHHHHcCCCcEEEEEE
Confidence 99999999998873 7889999999999864
No 146
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=97.94 E-value=6.9e-06 Score=65.46 Aligned_cols=77 Identities=12% Similarity=0.259 Sum_probs=51.3
Q ss_pred HHHHHhhccCCCCcceEEEeCCCCCC----------------------------Cccccccc---------c-----CCc
Q 045543 96 MNRILDYYKGFEKIKQLVDVGGGCGK----------------------------CGWKMFQK---------I-----LNG 133 (239)
Q Consensus 96 ~~~~~~~~~~~~~~~~vlDvGGG~G~----------------------------~~gD~~~~---------~-----p~~ 133 (239)
..++.+.|.-+.+..+|||+|||+|. +.+|+.+. + ...
T Consensus 13 L~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 92 (191)
T 3dou_A 13 LEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEEIAGVRFIRCDIFKETIFDDIDRALREEGIEKV 92 (191)
T ss_dssp HHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCCCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSE
T ss_pred HHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccccCCCeEEEEccccCHHHHHHHHHHhhcccCCcc
Confidence 34566667645677899999999995 34676552 1 223
Q ss_pred ceeeechhh---------hcCChhHHHHHHHHHHhhCCCCceEEEEee
Q 045543 134 DAILMKLIL---------RNWDDEHCLSLLKNCYEAIPGNGKIIIIDS 172 (239)
Q Consensus 134 D~~~l~~vl---------H~~~d~~~~~iL~~~~~aL~pgg~lli~d~ 172 (239)
|+|+..... |...-+.+..+|+.+.+.|+|||++++.-+
T Consensus 93 D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 93 DDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp EEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 888863211 111123356889999999999999987543
No 147
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=97.93 E-value=8.8e-06 Score=64.52 Aligned_cols=38 Identities=26% Similarity=0.193 Sum_probs=27.8
Q ss_pred ceeeechhhhcC----ChhH-----HHHHHHHHHhhCCCCceEEEEe
Q 045543 134 DAILMKLILRNW----DDEH-----CLSLLKNCYEAIPGNGKIIIID 171 (239)
Q Consensus 134 D~~~l~~vlH~~----~d~~-----~~~iL~~~~~aL~pgg~lli~d 171 (239)
|+|++...+|.. .|.. +..+|+++++.|+|||++++..
T Consensus 108 D~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 154 (201)
T 2plw_A 108 DIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM 154 (201)
T ss_dssp EEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 999987776642 1211 2358999999999999998743
No 148
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=97.90 E-value=2.3e-05 Score=61.70 Aligned_cols=66 Identities=12% Similarity=-0.009 Sum_probs=49.7
Q ss_pred CCcceEEEeCCCCCC----------------------------------------Cccccccc---cC-Cc-ceeeechh
Q 045543 107 EKIKQLVDVGGGCGK----------------------------------------CGWKMFQK---IL-NG-DAILMKLI 141 (239)
Q Consensus 107 ~~~~~vlDvGGG~G~----------------------------------------~~gD~~~~---~p-~~-D~~~l~~v 141 (239)
.+..+|||+|||+|. +.+|+.+. ++ .. |+|++...
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p 122 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP 122 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC
Confidence 355799999999998 34555441 22 33 99999887
Q ss_pred hhcCChhHHHHHHHHHHh--hCCCCceEEEEeee
Q 045543 142 LRNWDDEHCLSLLKNCYE--AIPGNGKIIIIDST 173 (239)
Q Consensus 142 lH~~~d~~~~~iL~~~~~--aL~pgg~lli~d~~ 173 (239)
+|. ..++..++++.+.+ .|+|||++++....
T Consensus 123 ~~~-~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 123 YNV-DSADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp TTS-CHHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred CCc-chhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 764 34667899999999 99999999886554
No 149
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=97.90 E-value=4.2e-05 Score=62.68 Aligned_cols=95 Identities=12% Similarity=0.085 Sum_probs=67.5
Q ss_pred CCcceEEEeCCCCCC------------------------------------------CccccccccCC---cceeeechh
Q 045543 107 EKIKQLVDVGGGCGK------------------------------------------CGWKMFQKILN---GDAILMKLI 141 (239)
Q Consensus 107 ~~~~~vlDvGGG~G~------------------------------------------~~gD~~~~~p~---~D~~~l~~v 141 (239)
++..+|+|||||+|. ..+|.+++++. .|++++..+
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~ 93 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM 93 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence 345799999999999 55777876663 498888765
Q ss_pred hhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCc
Q 045543 142 LRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFK 221 (239)
Q Consensus 142 lH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~ 221 (239)
..+....||..+.+.|+|+|++++. ... ..... ++||.+.||.
T Consensus 94 ----Gg~~i~~Il~~~~~~L~~~~~lVlq-~~~------------------------------~~~~v--r~~L~~~Gf~ 136 (225)
T 3kr9_A 94 ----GGRLIARILEEGLGKLANVERLILQ-PNN------------------------------REDDL--RIWLQDHGFQ 136 (225)
T ss_dssp ----CHHHHHHHHHHTGGGCTTCCEEEEE-ESS------------------------------CHHHH--HHHHHHTTEE
T ss_pred ----ChHHHHHHHHHHHHHhCCCCEEEEE-CCC------------------------------CHHHH--HHHHHHCCCE
Confidence 4455789999999999999988773 210 12334 7779999999
Q ss_pred eeeEEEc---CCceeEEEEE
Q 045543 222 GVNYESF---VCNFYIMEFI 238 (239)
Q Consensus 222 ~~~~~~~---~~~~~vie~~ 238 (239)
+++..-+ ...+.+|.+.
T Consensus 137 i~~e~lv~e~~~~Yeii~~~ 156 (225)
T 3kr9_A 137 IVAESILEEAGKFYEILVVE 156 (225)
T ss_dssp EEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEECCEEEEEEEEE
Confidence 8876432 2345566654
No 150
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=97.87 E-value=2.1e-05 Score=67.03 Aligned_cols=60 Identities=17% Similarity=0.178 Sum_probs=46.6
Q ss_pred CCCcceEEEeCCCCCC-----------------------------------------CccccccccCC-c-ceeeechhh
Q 045543 106 FEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQKILN-G-DAILMKLIL 142 (239)
Q Consensus 106 ~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~~p~-~-D~~~l~~vl 142 (239)
..+..+|||||||+|. +.+|..+ +|. . |+|++....
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~-l~d~~FDvV~~~a~~ 198 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETV-IDGLEFDVLMVAALA 198 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGG-GGGCCCSEEEECTTC
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhh-CCCCCcCEEEECCCc
Confidence 7788999999999985 3455544 443 3 999986552
Q ss_pred hcCChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543 143 RNWDDEHCLSLLKNCYEAIPGNGKIIIID 171 (239)
Q Consensus 143 H~~~d~~~~~iL~~~~~aL~pgg~lli~d 171 (239)
++ ..++++++++.|+|||+|++.+
T Consensus 199 ---~d--~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 199 ---EP--KRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp ---SC--HHHHHHHHHHHCCTTCEEEEEE
T ss_pred ---cC--HHHHHHHHHHHcCCCcEEEEEc
Confidence 33 4589999999999999999876
No 151
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=97.87 E-value=1.5e-05 Score=61.78 Aligned_cols=67 Identities=12% Similarity=0.061 Sum_probs=49.2
Q ss_pred HHHHhhccCCCCcceEEEeCCCCCC---------------------------------------CccccccccCC--cce
Q 045543 97 NRILDYYKGFEKIKQLVDVGGGCGK---------------------------------------CGWKMFQKILN--GDA 135 (239)
Q Consensus 97 ~~~~~~~~~~~~~~~vlDvGGG~G~---------------------------------------~~gD~~~~~p~--~D~ 135 (239)
..+++.++ ..+..+|||+|||+|. +.+|+.++++. .|+
T Consensus 25 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~ 103 (183)
T 2yxd_A 25 AVSIGKLN-LNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFNK 103 (183)
T ss_dssp HHHHHHHC-CCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCSE
T ss_pred HHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCcE
Confidence 34555555 6677899999999998 23455554553 399
Q ss_pred eeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEee
Q 045543 136 ILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDS 172 (239)
Q Consensus 136 ~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~ 172 (239)
+++..+ .+...+++++++. |||++++.+.
T Consensus 104 i~~~~~------~~~~~~l~~~~~~--~gG~l~~~~~ 132 (183)
T 2yxd_A 104 AFIGGT------KNIEKIIEILDKK--KINHIVANTI 132 (183)
T ss_dssp EEECSC------SCHHHHHHHHHHT--TCCEEEEEES
T ss_pred EEECCc------ccHHHHHHHHhhC--CCCEEEEEec
Confidence 999888 2345788898888 9999998763
No 152
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=97.85 E-value=1.1e-05 Score=66.00 Aligned_cols=66 Identities=18% Similarity=0.137 Sum_probs=50.2
Q ss_pred HHHHhhccCCCCcceEEEeCCCCCC----------------------------------------CccccccccCC---c
Q 045543 97 NRILDYYKGFEKIKQLVDVGGGCGK----------------------------------------CGWKMFQKILN---G 133 (239)
Q Consensus 97 ~~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~~~p~---~ 133 (239)
..+++.++ ..+..+|||||||+|. +.+|+..+++. .
T Consensus 81 ~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 159 (235)
T 1jg1_A 81 AIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPY 159 (235)
T ss_dssp HHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred HHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCCCc
Confidence 44555566 7777899999999997 33555444553 3
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIID 171 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d 171 (239)
|+|++..++|++.+ ++.+.|+|||++++.-
T Consensus 160 D~Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~~ 189 (235)
T 1jg1_A 160 DVIIVTAGAPKIPE--------PLIEQLKIGGKLIIPV 189 (235)
T ss_dssp EEEEECSBBSSCCH--------HHHHTEEEEEEEEEEE
T ss_pred cEEEECCcHHHHHH--------HHHHhcCCCcEEEEEE
Confidence 99999999998874 5788999999998853
No 153
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=97.84 E-value=1.1e-05 Score=67.13 Aligned_cols=70 Identities=6% Similarity=-0.063 Sum_probs=46.0
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHH
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMA 213 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ 213 (239)
|+|+.+.+- + ...+++.+.+.|+|||++++....... -...++ ..
T Consensus 153 D~I~s~a~~----~--~~~ll~~~~~~LkpgG~l~~~~g~~~~---------------------------~e~~~~--~~ 197 (249)
T 3g89_A 153 ARAVARAVA----P--LCVLSELLLPFLEVGGAAVAMKGPRVE---------------------------EELAPL--PP 197 (249)
T ss_dssp EEEEEESSC----C--HHHHHHHHGGGEEEEEEEEEEECSCCH---------------------------HHHTTH--HH
T ss_pred eEEEECCcC----C--HHHHHHHHHHHcCCCeEEEEEeCCCcH---------------------------HHHHHH--HH
Confidence 999987652 2 258899999999999999886521100 012345 67
Q ss_pred HHhhCCCceeeEEEc--C---CceeEEEEE
Q 045543 214 LTAKNGFKGVNYESF--V---CNFYIMEFI 238 (239)
Q Consensus 214 ll~~aGf~~~~~~~~--~---~~~~vie~~ 238 (239)
.+++.||++.++.+. + ....++...
T Consensus 198 ~l~~~G~~~~~~~~~~~p~~~~~R~l~~~~ 227 (249)
T 3g89_A 198 ALERLGGRLGEVLALQLPLSGEARHLVVLE 227 (249)
T ss_dssp HHHHHTEEEEEEEEEECTTTCCEEEEEEEE
T ss_pred HHHHcCCeEEEEEEeeCCCCCCcEEEEEEE
Confidence 788889988877654 2 234555544
No 154
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=97.83 E-value=1.6e-05 Score=69.03 Aligned_cols=70 Identities=20% Similarity=0.134 Sum_probs=49.5
Q ss_pred HHHhhccCCCCcceEEEeCCCCCC----------------------------------------Ccccccc-ccC-Cc-c
Q 045543 98 RILDYYKGFEKIKQLVDVGGGCGK----------------------------------------CGWKMFQ-KIL-NG-D 134 (239)
Q Consensus 98 ~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~-~~p-~~-D 134 (239)
.+.+... ..+..+|||||||+|. +.+|+.+ ++| .. |
T Consensus 55 ~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 133 (340)
T 2fyt_A 55 FIYQNPH-IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVD 133 (340)
T ss_dssp HHHHCGG-GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEE
T ss_pred HHHhhhh-hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEE
Confidence 4444444 5667899999999998 2345554 455 33 9
Q ss_pred eeeechhhhcC-ChhHHHHHHHHHHhhCCCCceEE
Q 045543 135 AILMKLILRNW-DDEHCLSLLKNCYEAIPGNGKII 168 (239)
Q Consensus 135 ~~~l~~vlH~~-~d~~~~~iL~~~~~aL~pgg~ll 168 (239)
+|++..+.+.+ .......+|+++++.|+|||+++
T Consensus 134 ~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 134 VIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 99977643222 23445689999999999999987
No 155
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=97.81 E-value=1e-05 Score=71.27 Aligned_cols=67 Identities=15% Similarity=0.071 Sum_probs=50.5
Q ss_pred CCCcceEEEeCCCCCC----------------------------------------Ccccccc-ccCCc-ceeeechhhh
Q 045543 106 FEKIKQLVDVGGGCGK----------------------------------------CGWKMFQ-KILNG-DAILMKLILR 143 (239)
Q Consensus 106 ~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~-~~p~~-D~~~l~~vlH 143 (239)
..+..+|||||||+|. +.+|+.+ ++|.. |+|++..+.|
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~~ 140 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMGY 140 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCBT
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChhh
Confidence 5567899999999998 3455554 44543 9999977666
Q ss_pred cCCh-hHHHHHHHHHHhhCCCCceEEEEee
Q 045543 144 NWDD-EHCLSLLKNCYEAIPGNGKIIIIDS 172 (239)
Q Consensus 144 ~~~d-~~~~~iL~~~~~aL~pgg~lli~d~ 172 (239)
.... .....+++++++.|+|||++++.+.
T Consensus 141 ~l~~e~~~~~~l~~~~~~LkpgG~li~~~~ 170 (376)
T 3r0q_C 141 FLLRESMFDSVISARDRWLKPTGVMYPSHA 170 (376)
T ss_dssp TBTTTCTHHHHHHHHHHHEEEEEEEESSEE
T ss_pred cccchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 5543 3456799999999999999987654
No 156
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=97.81 E-value=0.00037 Score=60.92 Aligned_cols=101 Identities=10% Similarity=-0.035 Sum_probs=59.0
Q ss_pred ccccc-ccCCc--ceeeechhhhcCCh-------------------------------hHHHHHHHHHHhhCCCCceEEE
Q 045543 124 WKMFQ-KILNG--DAILMKLILRNWDD-------------------------------EHCLSLLKNCYEAIPGNGKIII 169 (239)
Q Consensus 124 gD~~~-~~p~~--D~~~l~~vlH~~~d-------------------------------~~~~~iL~~~~~aL~pgg~lli 169 (239)
|.|+. .+|.. |+++.+..||=.++ ++-..+|+..++.|+|||++++
T Consensus 128 gSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl 207 (359)
T 1m6e_X 128 GSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVL 207 (359)
T ss_dssp SCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEE
T ss_pred hhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 45665 56754 99999999984332 1345669999999999999988
Q ss_pred EeeecCCCCC-C----C-hhhhhhhhhhHHHhhccC---------CccccChhhccHHHHHhhCCC-ceeeEE
Q 045543 170 IDSTTVVIPE-A----T-PATREASSIDIIMLMQLS---------GEKERTKQEYYGMALTAKNGF-KGVNYE 226 (239)
Q Consensus 170 ~d~~~~~~~~-~----~-~~~~~~~~~dl~ml~~~~---------~g~~rt~~e~~~~~ll~~aGf-~~~~~~ 226 (239)
.=...+.... . . +......+.|+..-.... --..++.+|+ +++++++|+ ++.+..
T Consensus 208 ~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~--~~~ie~~G~F~i~~~e 278 (359)
T 1m6e_X 208 TILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEV--EAEILKEGSFLIDHIE 278 (359)
T ss_dssp EEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHH--HHHHHHTTTBCCEEEE
T ss_pred EEecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHH--HHHHHHcCCceEEEEE
Confidence 6544433210 0 0 000111222221110000 1134588999 999999964 766543
No 157
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=97.80 E-value=1e-05 Score=64.41 Aligned_cols=56 Identities=14% Similarity=0.236 Sum_probs=41.8
Q ss_pred cceEEEeCCCCCC-----------------------------------------CccccccccCC-c-ceeeechhhhcC
Q 045543 109 IKQLVDVGGGCGK-----------------------------------------CGWKMFQKILN-G-DAILMKLILRNW 145 (239)
Q Consensus 109 ~~~vlDvGGG~G~-----------------------------------------~~gD~~~~~p~-~-D~~~l~~vlH~~ 145 (239)
..+|||||||+|. +.+|+.+..+. . |+|++..+ ++
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~-~~- 143 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF-AS- 143 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS-SS-
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc-CC-
Confidence 5799999999998 33455442232 3 99986543 22
Q ss_pred ChhHHHHHHHHHHhhCCCCceEEEE
Q 045543 146 DDEHCLSLLKNCYEAIPGNGKIIII 170 (239)
Q Consensus 146 ~d~~~~~iL~~~~~aL~pgg~lli~ 170 (239)
...+++++++.|+|||++++.
T Consensus 144 ----~~~~l~~~~~~L~~gG~l~~~ 164 (207)
T 1jsx_A 144 ----LNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp ----HHHHHHHHTTSEEEEEEEEEE
T ss_pred ----HHHHHHHHHHhcCCCcEEEEE
Confidence 358999999999999999886
No 158
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=97.80 E-value=3.5e-05 Score=61.94 Aligned_cols=62 Identities=19% Similarity=0.280 Sum_probs=43.9
Q ss_pred CcceEEEeCCCCCC-----------------------------------------Ccccccc-c--cCC-c-ceeeechh
Q 045543 108 KIKQLVDVGGGCGK-----------------------------------------CGWKMFQ-K--ILN-G-DAILMKLI 141 (239)
Q Consensus 108 ~~~~vlDvGGG~G~-----------------------------------------~~gD~~~-~--~p~-~-D~~~l~~v 141 (239)
+..+|||||||+|. +.+|+.+ + ++. . |+|++...
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 45789999999999 3455554 2 443 3 98887754
Q ss_pred hhcCChh-------HHHHHHHHHHhhCCCCceEEEE
Q 045543 142 LRNWDDE-------HCLSLLKNCYEAIPGNGKIIII 170 (239)
Q Consensus 142 lH~~~d~-------~~~~iL~~~~~aL~pgg~lli~ 170 (239)
.+ |... ....+|+++++.|+|||++++.
T Consensus 121 ~~-~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (214)
T 1yzh_A 121 DP-WPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK 155 (214)
T ss_dssp CC-CCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred CC-ccccchhhhccCCHHHHHHHHHHcCCCcEEEEE
Confidence 32 2211 1257999999999999999884
No 159
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=97.78 E-value=5.3e-05 Score=63.79 Aligned_cols=88 Identities=13% Similarity=0.118 Sum_probs=61.2
Q ss_pred CCCcceEEEeCCCCCC-----------------------------------------CccccccccCC--cceeeechhh
Q 045543 106 FEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQKILN--GDAILMKLIL 142 (239)
Q Consensus 106 ~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~~p~--~D~~~l~~vl 142 (239)
..+..+|||+|||+|. +.+|.++..+. .|++++...
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p- 201 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV- 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC-
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCc-
Confidence 3456899999999999 34566552222 399887422
Q ss_pred hcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCce
Q 045543 143 RNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKG 222 (239)
Q Consensus 143 H~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~ 222 (239)
.....+++++.+.|+|||++++.+....... .....+++ .+.++++||+.
T Consensus 202 -----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-----------------------~~~~~~~i--~~~~~~~G~~~ 251 (278)
T 2frn_A 202 -----VRTHEFIPKALSIAKDGAIIHYHNTVPEKLM-----------------------PREPFETF--KRITKEYGYDV 251 (278)
T ss_dssp -----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT-----------------------TTTTHHHH--HHHHHHTTCEE
T ss_pred -----hhHHHHHHHHHHHCCCCeEEEEEEeeccccc-----------------------cccHHHHH--HHHHHHcCCee
Confidence 2235789999999999999999887532110 01244666 88899999987
Q ss_pred ee
Q 045543 223 VN 224 (239)
Q Consensus 223 ~~ 224 (239)
..
T Consensus 252 ~~ 253 (278)
T 2frn_A 252 EK 253 (278)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 160
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=97.77 E-value=1.1e-05 Score=65.40 Aligned_cols=38 Identities=11% Similarity=0.168 Sum_probs=30.1
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeec
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTT 174 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~ 174 (239)
|+|++....|++.+ ...+++.+ +.|+|||+|++.+...
T Consensus 136 D~V~~d~~~~~~~~--~~~~~~~~-~~LkpgG~lv~~~~~~ 173 (221)
T 3u81_A 136 DMVFLDHWKDRYLP--DTLLLEKC-GLLRKGTVLLADNVIV 173 (221)
T ss_dssp SEEEECSCGGGHHH--HHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred EEEEEcCCcccchH--HHHHHHhc-cccCCCeEEEEeCCCC
Confidence 99999988877743 34778888 9999999988766554
No 161
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=97.77 E-value=2.3e-05 Score=63.27 Aligned_cols=37 Identities=11% Similarity=-0.006 Sum_probs=28.0
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecC
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTV 175 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~ 175 (239)
|+|++... ......+++++.+.|+|||.|++.+...+
T Consensus 135 D~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 171 (223)
T 3duw_A 135 DFIFIDAD-----KQNNPAYFEWALKLSRPGTVIIGDNVVRE 171 (223)
T ss_dssp SEEEECSC-----GGGHHHHHHHHHHTCCTTCEEEEESCSGG
T ss_pred CEEEEcCC-----cHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 88876543 34456899999999999998877666543
No 162
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=97.77 E-value=0.00013 Score=59.97 Aligned_cols=95 Identities=15% Similarity=0.087 Sum_probs=69.0
Q ss_pred CCcceEEEeCCCCCC------------------------------------------CccccccccCC---cceeeechh
Q 045543 107 EKIKQLVDVGGGCGK------------------------------------------CGWKMFQKILN---GDAILMKLI 141 (239)
Q Consensus 107 ~~~~~vlDvGGG~G~------------------------------------------~~gD~~~~~p~---~D~~~l~~v 141 (239)
++..+|+|||||+|. ..||.++.++. .|++++.++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm 99 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM 99 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence 345899999999999 55788875542 399988766
Q ss_pred hhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCc
Q 045543 142 LRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFK 221 (239)
Q Consensus 142 lH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~ 221 (239)
. .+....||....+.|+++|++++.-. . ..++. ++||.+.||.
T Consensus 100 G----g~lI~~IL~~~~~~l~~~~~lIlqp~-------------------------~------~~~~l--r~~L~~~Gf~ 142 (230)
T 3lec_A 100 G----GRLIADILNNDIDKLQHVKTLVLQPN-------------------------N------REDDL--RKWLAANDFE 142 (230)
T ss_dssp C----HHHHHHHHHHTGGGGTTCCEEEEEES-------------------------S------CHHHH--HHHHHHTTEE
T ss_pred c----hHHHHHHHHHHHHHhCcCCEEEEECC-------------------------C------ChHHH--HHHHHHCCCE
Confidence 3 46678999999999999998877421 0 13445 8889999999
Q ss_pred eeeEEEc---CCceeEEEEE
Q 045543 222 GVNYESF---VCNFYIMEFI 238 (239)
Q Consensus 222 ~~~~~~~---~~~~~vie~~ 238 (239)
+++..-+ ...+.+|.+.
T Consensus 143 i~~E~lv~e~~~~Yeii~~~ 162 (230)
T 3lec_A 143 IVAEDILTENDKRYEILVVK 162 (230)
T ss_dssp EEEEEEEEC--CEEEEEEEE
T ss_pred EEEEEEEEECCEEEEEEEEE
Confidence 9876543 2356677664
No 163
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=97.76 E-value=9.1e-06 Score=70.81 Aligned_cols=64 Identities=20% Similarity=0.169 Sum_probs=47.3
Q ss_pred CCCcceEEEeCCCCCC----------------------------------------Ccccccc-ccCC-c-ceeeechhh
Q 045543 106 FEKIKQLVDVGGGCGK----------------------------------------CGWKMFQ-KILN-G-DAILMKLIL 142 (239)
Q Consensus 106 ~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~-~~p~-~-D~~~l~~vl 142 (239)
..+..+|||||||+|. +.+|+.+ ++|. . |+|++..+.
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred cCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 3456899999999998 3456555 5663 3 999987664
Q ss_pred hcC-ChhHHHHHHHHHHhhCCCCceEEE
Q 045543 143 RNW-DDEHCLSLLKNCYEAIPGNGKIII 169 (239)
Q Consensus 143 H~~-~d~~~~~iL~~~~~aL~pgg~lli 169 (239)
|.+ ..+....+|+.+.+.|+|||+++.
T Consensus 144 ~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 144 YCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 443 233456899999999999999874
No 164
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=97.75 E-value=0.0001 Score=60.61 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=32.6
Q ss_pred ceeeechhhhcCCh-------hHHHHHHHHHHhhCCCCceEEEEeee
Q 045543 134 DAILMKLILRNWDD-------EHCLSLLKNCYEAIPGNGKIIIIDST 173 (239)
Q Consensus 134 D~~~l~~vlH~~~d-------~~~~~iL~~~~~aL~pgg~lli~d~~ 173 (239)
|+|++...++...+ +....+++++++.|+|||++++++..
T Consensus 170 D~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 216 (250)
T 1o9g_A 170 DVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAVTDRS 216 (250)
T ss_dssp SEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEEEESS
T ss_pred eEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEEEeCcc
Confidence 99999877665443 66789999999999999999986543
No 165
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=97.75 E-value=5.4e-05 Score=66.77 Aligned_cols=103 Identities=11% Similarity=0.058 Sum_probs=59.3
Q ss_pred Ccccccc-ccCCc--ceeeechhhhcCChh-------------------------HH------------HHHHHHHHhhC
Q 045543 122 CGWKMFQ-KILNG--DAILMKLILRNWDDE-------------------------HC------------LSLLKNCYEAI 161 (239)
Q Consensus 122 ~~gD~~~-~~p~~--D~~~l~~vlH~~~d~-------------------------~~------------~~iL~~~~~aL 161 (239)
++|.|+. -+|.. |+++.+..||=.++. .+ ..+|+..++.|
T Consensus 136 vpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra~eL 215 (384)
T 2efj_A 136 MPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEEL 215 (384)
T ss_dssp CCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666 56754 999999999843321 12 23388889999
Q ss_pred CCCceEEEEeeecCCCC-CCChh-hhhhhhhhHHHhhc--------c-CCccccChhhccHHHHHhhCC-CceeeEE
Q 045543 162 PGNGKIIIIDSTTVVIP-EATPA-TREASSIDIIMLMQ--------L-SGEKERTKQEYYGMALTAKNG-FKGVNYE 226 (239)
Q Consensus 162 ~pgg~lli~d~~~~~~~-~~~~~-~~~~~~~dl~ml~~--------~-~~g~~rt~~e~~~~~ll~~aG-f~~~~~~ 226 (239)
+|||++++.=.-.+... .+... .....+.|+.---. + ---..++.+|+ +++++++| |++.++.
T Consensus 216 ~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~--~~~le~~g~F~i~~le 290 (384)
T 2efj_A 216 ISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEV--KRIVEEEGSFEILYLE 290 (384)
T ss_dssp EEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHH--HHHHHHHCSEEEEEEE
T ss_pred ccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHH--HHHHHHcCCceEEEEE
Confidence 99999988644333320 11100 01122222211100 0 00123689999 99999985 7887654
No 166
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=97.74 E-value=2.2e-05 Score=64.86 Aligned_cols=37 Identities=16% Similarity=0.051 Sum_probs=28.6
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecC
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTV 175 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~ 175 (239)
|+|++.. +......+|+++++.|+|||.|++.+....
T Consensus 138 D~V~~d~-----~~~~~~~~l~~~~~~LkpGG~lv~~~~~~~ 174 (248)
T 3tfw_A 138 DLIFIDA-----DKPNNPHYLRWALRYSRPGTLIIGDNVVRD 174 (248)
T ss_dssp SEEEECS-----CGGGHHHHHHHHHHTCCTTCEEEEECCSGG
T ss_pred EEEEECC-----chHHHHHHHHHHHHhcCCCeEEEEeCCCcC
Confidence 9988744 344557899999999999998888665543
No 167
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=97.73 E-value=1.6e-05 Score=64.66 Aligned_cols=63 Identities=10% Similarity=0.162 Sum_probs=42.9
Q ss_pred CcceEEEeCCCCCC-----------------------------------------Cccccccc----cCCc--ceeeech
Q 045543 108 KIKQLVDVGGGCGK-----------------------------------------CGWKMFQK----ILNG--DAILMKL 140 (239)
Q Consensus 108 ~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~----~p~~--D~~~l~~ 140 (239)
...+|||||||+|. +.+|..+. ++.+ |.|++..
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 56799999999999 34554431 4443 8777653
Q ss_pred hhhcCChhHH-------HHHHHHHHhhCCCCceEEEEe
Q 045543 141 ILRNWDDEHC-------LSLLKNCYEAIPGNGKIIIID 171 (239)
Q Consensus 141 vlH~~~d~~~-------~~iL~~~~~aL~pgg~lli~d 171 (239)
... |+.... ..+++.+++.|+|||+|++..
T Consensus 114 ~~p-~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 114 PDP-WHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp CCC-CCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCC-ccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 322 322211 259999999999999998853
No 168
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=97.72 E-value=2.7e-05 Score=65.26 Aligned_cols=69 Identities=19% Similarity=0.354 Sum_probs=51.5
Q ss_pred HHHHHhhccCCCCcceEEEeCCCCCC-------------------------------------------CccccccccCC
Q 045543 96 MNRILDYYKGFEKIKQLVDVGGGCGK-------------------------------------------CGWKMFQKILN 132 (239)
Q Consensus 96 ~~~~~~~~~~~~~~~~vlDvGGG~G~-------------------------------------------~~gD~~~~~p~ 132 (239)
+..++..++ +.+..+|||+|||+|. +.+|+.+.++.
T Consensus 101 ~~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 179 (277)
T 1o54_A 101 SSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 179 (277)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccC
Confidence 345666676 7788899999999997 33455544453
Q ss_pred --cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEee
Q 045543 133 --GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDS 172 (239)
Q Consensus 133 --~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~ 172 (239)
.|+|++ +.++. ..+|+++.++|+|||++++.+.
T Consensus 180 ~~~D~V~~-----~~~~~--~~~l~~~~~~L~pgG~l~~~~~ 214 (277)
T 1o54_A 180 KDVDALFL-----DVPDP--WNYIDKCWEALKGGGRFATVCP 214 (277)
T ss_dssp CSEEEEEE-----CCSCG--GGTHHHHHHHEEEEEEEEEEES
T ss_pred CccCEEEE-----CCcCH--HHHHHHHHHHcCCCCEEEEEeC
Confidence 388887 34443 4889999999999999999764
No 169
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=97.72 E-value=2.5e-05 Score=66.94 Aligned_cols=66 Identities=14% Similarity=0.311 Sum_probs=49.8
Q ss_pred HHHHhhccCCCCcceEEEeCCCCCC------------------------------------------CccccccccC-C-
Q 045543 97 NRILDYYKGFEKIKQLVDVGGGCGK------------------------------------------CGWKMFQKIL-N- 132 (239)
Q Consensus 97 ~~~~~~~~~~~~~~~vlDvGGG~G~------------------------------------------~~gD~~~~~p-~- 132 (239)
..+++.++ ..+..+|||||||+|. +.+|+.+..+ .
T Consensus 65 ~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~ 143 (317)
T 1dl5_A 65 ALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (317)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCC
Confidence 34555555 6777899999999998 2345544232 2
Q ss_pred c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543 133 G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIID 171 (239)
Q Consensus 133 ~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d 171 (239)
. |+|++..++|+.+ +++.+.|+|||++++..
T Consensus 144 ~fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~ 175 (317)
T 1dl5_A 144 PYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 175 (317)
T ss_dssp CEEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEB
T ss_pred CeEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEE
Confidence 3 9999999999887 46788999999999974
No 170
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=97.72 E-value=1e-05 Score=66.16 Aligned_cols=65 Identities=11% Similarity=0.204 Sum_probs=47.2
Q ss_pred CCCcceEEEeCCCCCC------------------------------------------CccccccccC----Cc-ceeee
Q 045543 106 FEKIKQLVDVGGGCGK------------------------------------------CGWKMFQKIL----NG-DAILM 138 (239)
Q Consensus 106 ~~~~~~vlDvGGG~G~------------------------------------------~~gD~~~~~p----~~-D~~~l 138 (239)
..+..+|||||||+|. +.+|+.+..| .. |+|++
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI 148 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence 4567899999999998 3456655333 23 99986
Q ss_pred chhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecC
Q 045543 139 KLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTV 175 (239)
Q Consensus 139 ~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~ 175 (239)
.. +.+....+++++.+.|+|||+|++.+...+
T Consensus 149 ~~-----~~~~~~~~l~~~~~~LkpgG~lv~d~~~~~ 180 (232)
T 3ntv_A 149 DA-----AKAQSKKFFEIYTPLLKHQGLVITDNVLYH 180 (232)
T ss_dssp ET-----TSSSHHHHHHHHGGGEEEEEEEEEECTTGG
T ss_pred cC-----cHHHHHHHHHHHHHhcCCCeEEEEeeCCcC
Confidence 53 233456899999999999999977555443
No 171
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=97.70 E-value=3.2e-05 Score=66.41 Aligned_cols=153 Identities=11% Similarity=0.022 Sum_probs=85.9
Q ss_pred CHHHHHHhCCCCCCCChhhHHHHHHHhcc--------CCCCCCCeEecChh--h-----HHHHhcCCC-----ccc---c
Q 045543 17 SAAEIEAQMPSHNPNAAVMLDRVLRRSLS--------SAGDDRRLQRLAPV--A-----KYVLHYGIG-----DYE---H 73 (239)
Q Consensus 17 t~~eLA~~~g~~~~~~~~~l~rlL~~L~~--------~~~~~~~~y~~t~~--s-----~~l~~~g~~-----~~~---~ 73 (239)
.++.||.+... ++-.++++.+.+-. ..++.+-.++.|+. + +.|...|.. +.. +
T Consensus 6 ~~~~l~~~~~~----P~w~~~~~~~~~g~~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~ 81 (315)
T 1ixk_A 6 SMLDKLLRLGY----SKLFADRYFQLWGERAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVPWAKEGFC 81 (315)
T ss_dssp HHHHHHHHTTC----CHHHHHHHHHHHTTHHHHHHHHTTSCCCCEEEECTTTSCHHHHHHHHHHTTCEEEEETTEEEEEE
T ss_pred HHHHHHHHhCC----cHHHHHHHHHHccHHHHHHHHHcCCCCCeEEEEeCCCCCHHHHHHHHHhCCCeeeECCCCCceEE
Confidence 46778888888 77777777655431 12333344554433 1 123233421 111 1
Q ss_pred ccc---CchHHHHHHHHHHhcccccHHHHHhhccCCCCcceEEEeCCCCCC-----------------------------
Q 045543 74 AGL---DSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGK----------------------------- 121 (239)
Q Consensus 74 l~~---~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGGG~G~----------------------------- 121 (239)
+.. +......|..+.-.........++..++ ..+..+|||+|||+|.
T Consensus 82 ~~~~~~~~~~~~~~~~G~~~~qd~~s~l~~~~l~-~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~ 160 (315)
T 1ixk_A 82 LTREPFSITSTPEFLTGLIYIQEASSMYPPVALD-PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETR 160 (315)
T ss_dssp EEECSSCGGGSHHHHTTSEEECCHHHHHHHHHHC-CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHH
T ss_pred EeCCCCCcccChhHhcceEEEeCHHHHHHHHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH
Confidence 211 2233344554443333322333445556 6777899999999998
Q ss_pred -------------Ccccccc-c-cCCc-ceeee------chhhhc-------CChhH-------HHHHHHHHHhhCCCCc
Q 045543 122 -------------CGWKMFQ-K-ILNG-DAILM------KLILRN-------WDDEH-------CLSLLKNCYEAIPGNG 165 (239)
Q Consensus 122 -------------~~gD~~~-~-~p~~-D~~~l------~~vlH~-------~~d~~-------~~~iL~~~~~aL~pgg 165 (239)
+.+|+.+ + .+.. |+|++ ..+++. |+.++ ..++|+++++.|+|||
T Consensus 161 ~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG 240 (315)
T 1ixk_A 161 LNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGG 240 (315)
T ss_dssp HHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEE
T ss_pred HHHHHhCCCeEEEEECChhhcccccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3455544 2 2223 99987 233432 33333 2589999999999999
Q ss_pred eEEEEeeec
Q 045543 166 KIIIIDSTT 174 (239)
Q Consensus 166 ~lli~d~~~ 174 (239)
+|++.....
T Consensus 241 ~lv~stcs~ 249 (315)
T 1ixk_A 241 ILVYSTCSL 249 (315)
T ss_dssp EEEEEESCC
T ss_pred EEEEEeCCC
Confidence 998876533
No 172
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=97.70 E-value=3.8e-05 Score=61.97 Aligned_cols=21 Identities=24% Similarity=0.252 Sum_probs=18.6
Q ss_pred HHHHHHHHhhCCCCceEEEEe
Q 045543 151 LSLLKNCYEAIPGNGKIIIID 171 (239)
Q Consensus 151 ~~iL~~~~~aL~pgg~lli~d 171 (239)
..+|+.+++.|+|||+|++..
T Consensus 133 ~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 133 SHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp HHHHHHHHHHHTTSCEEEEEE
T ss_pred HHHHHHHHHHcCCCCEEEEEe
Confidence 578999999999999998853
No 173
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=97.69 E-value=2.9e-05 Score=63.83 Aligned_cols=68 Identities=10% Similarity=0.168 Sum_probs=50.0
Q ss_pred HHHHhhccCCCCcceEEEeCCCCCC----------------------------------C---------cccccc-ccCC
Q 045543 97 NRILDYYKGFEKIKQLVDVGGGCGK----------------------------------C---------GWKMFQ-KILN 132 (239)
Q Consensus 97 ~~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------~---------~gD~~~-~~p~ 132 (239)
..++..++ +.+..+|||+|||+|. . .+|+.+ +++.
T Consensus 86 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 164 (258)
T 2pwy_A 86 SAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE 164 (258)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred HHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence 45667777 7888999999999997 0 123333 2453
Q ss_pred --cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEee
Q 045543 133 --GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDS 172 (239)
Q Consensus 133 --~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~ 172 (239)
.|+|++ ++++. ..+|++++++|+|||++++...
T Consensus 165 ~~~D~v~~-----~~~~~--~~~l~~~~~~L~~gG~l~~~~~ 199 (258)
T 2pwy_A 165 AAYDGVAL-----DLMEP--WKVLEKAALALKPDRFLVAYLP 199 (258)
T ss_dssp TCEEEEEE-----ESSCG--GGGHHHHHHHEEEEEEEEEEES
T ss_pred CCcCEEEE-----CCcCH--HHHHHHHHHhCCCCCEEEEEeC
Confidence 388887 45544 3789999999999999999763
No 174
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=97.69 E-value=4.2e-05 Score=62.22 Aligned_cols=36 Identities=8% Similarity=0.085 Sum_probs=29.2
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeec
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTT 174 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~ 174 (239)
|+|++....+ +...+|+++.+.|+|||++++.+...
T Consensus 128 D~I~~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~~ 163 (233)
T 2gpy_A 128 DVLFIDAAKG-----QYRRFFDMYSPMVRPGGLILSDNVLF 163 (233)
T ss_dssp EEEEEEGGGS-----CHHHHHHHHGGGEEEEEEEEEETTTC
T ss_pred cEEEECCCHH-----HHHHHHHHHHHHcCCCeEEEEEcCCc
Confidence 9999877654 34689999999999999998876543
No 175
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=97.67 E-value=2e-05 Score=68.06 Aligned_cols=64 Identities=20% Similarity=0.116 Sum_probs=46.6
Q ss_pred CCCcceEEEeCCCCCC----------------------------------------Ccccccc-ccC-Cc-ceeeechhh
Q 045543 106 FEKIKQLVDVGGGCGK----------------------------------------CGWKMFQ-KIL-NG-DAILMKLIL 142 (239)
Q Consensus 106 ~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~-~~p-~~-D~~~l~~vl 142 (239)
..+..+|||||||+|. +.+|+.+ ++| .. |+|++..+.
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~ 115 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred hcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCch
Confidence 4456799999999998 3345554 455 33 999988655
Q ss_pred hcCC-hhHHHHHHHHHHhhCCCCceEEE
Q 045543 143 RNWD-DEHCLSLLKNCYEAIPGNGKIII 169 (239)
Q Consensus 143 H~~~-d~~~~~iL~~~~~aL~pgg~lli 169 (239)
|.+. ......+|+.+.+.|+|||+++.
T Consensus 116 ~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 116 YFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 4432 33345899999999999999874
No 176
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=97.65 E-value=3.4e-05 Score=59.85 Aligned_cols=74 Identities=9% Similarity=0.117 Sum_probs=48.4
Q ss_pred HHHHhhccCCCCcceEEEeCCCCCC-----------------------------------------CccccccccC---C
Q 045543 97 NRILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQKIL---N 132 (239)
Q Consensus 97 ~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~~p---~ 132 (239)
..+++.+....+..+|||+|||+|. +.+|+.+..+ .
T Consensus 20 ~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 99 (177)
T 2esr_A 20 GAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTG 99 (177)
T ss_dssp HHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCS
T ss_pred HHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcC
Confidence 3444444324456899999999999 2345544222 3
Q ss_pred c-ceeeechhhhcCChhHHHHHHHHHH--hhCCCCceEEEEeee
Q 045543 133 G-DAILMKLILRNWDDEHCLSLLKNCY--EAIPGNGKIIIIDST 173 (239)
Q Consensus 133 ~-D~~~l~~vlH~~~d~~~~~iL~~~~--~aL~pgg~lli~d~~ 173 (239)
. |++++...+|. .....+++.+. +.|+|||++++....
T Consensus 100 ~fD~i~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 140 (177)
T 2esr_A 100 RFDLVFLDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETDK 140 (177)
T ss_dssp CEEEEEECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred CCCEEEECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence 3 99998766642 22345566665 999999999886543
No 177
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=97.65 E-value=9.4e-05 Score=60.39 Aligned_cols=91 Identities=11% Similarity=0.108 Sum_probs=58.8
Q ss_pred cccCchHHHHHHHHHHhcccc----cHHHHHhhccCCCCcceEEEeCCCCCC----------------------------
Q 045543 74 AGLDSRFNEVLNTAMLSHNSI----VMNRILDYYKGFEKIKQLVDVGGGCGK---------------------------- 121 (239)
Q Consensus 74 l~~~~~~~~~f~~~m~~~~~~----~~~~~~~~~~~~~~~~~vlDvGGG~G~---------------------------- 121 (239)
+-..|.........+...... .+..++...+ ..+..+|||+|||+|.
T Consensus 54 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~ 132 (248)
T 2yvl_A 54 EVYRPTLEEIILLGFERKTQIIYPKDSFYIALKLN-LNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKN 132 (248)
T ss_dssp EEECCCHHHHHHHTSCCSSCCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHH
T ss_pred EEeCCCHHHHHHhcCcCCCCcccchhHHHHHHhcC-CCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHH
Confidence 334555444443444333221 2335556666 7778899999999997
Q ss_pred ------------Ccccccccc-CC-c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEee
Q 045543 122 ------------CGWKMFQKI-LN-G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDS 172 (239)
Q Consensus 122 ------------~~gD~~~~~-p~-~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~ 172 (239)
..+|+.+.. +. . |++++ +.++. ..+++++.+.|+|||++++...
T Consensus 133 ~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~-----~~~~~--~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 133 LKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFV-----DVREP--WHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp HHHTTCCTTEEEECSCTTTSCCCTTCBSEEEE-----CSSCG--GGGHHHHHHHBCTTCEEEEEES
T ss_pred HHHcCCCCcEEEEEcChhhcccCCCcccEEEE-----CCcCH--HHHHHHHHHHcCCCCEEEEEeC
Confidence 234555544 43 3 99886 33333 4789999999999999999764
No 178
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=97.63 E-value=4.1e-05 Score=59.67 Aligned_cols=71 Identities=13% Similarity=0.098 Sum_probs=46.9
Q ss_pred HHhhccCCCCcceEEEeCCCCCC-----------------------------------------Ccccccccc------C
Q 045543 99 ILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQKI------L 131 (239)
Q Consensus 99 ~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~~------p 131 (239)
+++.+....+..+|||+|||+|. +.+|+.+.. +
T Consensus 35 ~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 114 (187)
T 2fhp_A 35 IFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEK 114 (187)
T ss_dssp HHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTT
T ss_pred HHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcC
Confidence 33344324466899999999999 334554421 2
Q ss_pred Cc-ceeeechhhhcCChhHHHHHHHHH--HhhCCCCceEEEEee
Q 045543 132 NG-DAILMKLILRNWDDEHCLSLLKNC--YEAIPGNGKIIIIDS 172 (239)
Q Consensus 132 ~~-D~~~l~~vlH~~~d~~~~~iL~~~--~~aL~pgg~lli~d~ 172 (239)
.. |++++...+|....+ .+++.+ ++.|+|||++++...
T Consensus 115 ~~fD~i~~~~~~~~~~~~---~~~~~l~~~~~L~~gG~l~~~~~ 155 (187)
T 2fhp_A 115 LQFDLVLLDPPYAKQEIV---SQLEKMLERQLLTNEAVIVCETD 155 (187)
T ss_dssp CCEEEEEECCCGGGCCHH---HHHHHHHHTTCEEEEEEEEEEEE
T ss_pred CCCCEEEECCCCCchhHH---HHHHHHHHhcccCCCCEEEEEeC
Confidence 33 999998876643333 445555 888999999988644
No 179
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=97.60 E-value=5.3e-05 Score=62.48 Aligned_cols=38 Identities=16% Similarity=0.089 Sum_probs=29.3
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCC
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVV 176 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~ 176 (239)
|+|++... .+....+|+++.+.|+|||.|++.+.....
T Consensus 138 D~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g 175 (242)
T 3r3h_A 138 DFIFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNIFWDG 175 (242)
T ss_dssp EEEEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECSSSSS
T ss_pred eEEEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECCccCC
Confidence 88877543 344567899999999999999887766543
No 180
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=97.59 E-value=7.7e-05 Score=63.82 Aligned_cols=36 Identities=14% Similarity=0.125 Sum_probs=25.3
Q ss_pred ceeeechhhh---cCChhH-HHHHHHHHHhhCCCCceEEE
Q 045543 134 DAILMKLILR---NWDDEH-CLSLLKNCYEAIPGNGKIII 169 (239)
Q Consensus 134 D~~~l~~vlH---~~~d~~-~~~iL~~~~~aL~pgg~lli 169 (239)
|+|++....| ...|.. ...+|+.+++.|+|||++++
T Consensus 150 D~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~ 189 (305)
T 2p41_A 150 DTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCV 189 (305)
T ss_dssp SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred CEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence 9988865543 222222 23689999999999998876
No 181
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=97.59 E-value=2.9e-05 Score=67.00 Aligned_cols=32 Identities=16% Similarity=0.191 Sum_probs=24.0
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEee
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDS 172 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~ 172 (239)
|+|++.. ++. ..+++++++.|+|||++++...
T Consensus 189 D~V~~~~-----~~~--~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 189 DAVALDM-----LNP--HVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp EEEEECS-----SST--TTTHHHHGGGEEEEEEEEEEES
T ss_pred eEEEECC-----CCH--HHHHHHHHHhcCCCcEEEEEeC
Confidence 8888732 222 1379999999999999998764
No 182
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=97.57 E-value=0.00025 Score=58.68 Aligned_cols=95 Identities=14% Similarity=0.131 Sum_probs=66.8
Q ss_pred CCcceEEEeCCCCCC------------------------------------------CccccccccCC---cceeeechh
Q 045543 107 EKIKQLVDVGGGCGK------------------------------------------CGWKMFQKILN---GDAILMKLI 141 (239)
Q Consensus 107 ~~~~~vlDvGGG~G~------------------------------------------~~gD~~~~~p~---~D~~~l~~v 141 (239)
++..+|+|||||+|. ..+|.++.++. .|+|++.++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm 99 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM 99 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence 345899999999999 45677775542 499888655
Q ss_pred hhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCc
Q 045543 142 LRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFK 221 (239)
Q Consensus 142 lH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~ 221 (239)
..+....||....+.|+++++|++.-.. ..... ++||.+.||.
T Consensus 100 ----Gg~lI~~IL~~~~~~L~~~~~lIlq~~~-------------------------------~~~~l--r~~L~~~Gf~ 142 (244)
T 3gnl_A 100 ----GGTLIRTILEEGAAKLAGVTKLILQPNI-------------------------------AAWQL--REWSEQNNWL 142 (244)
T ss_dssp ----CHHHHHHHHHHTGGGGTTCCEEEEEESS-------------------------------CHHHH--HHHHHHHTEE
T ss_pred ----chHHHHHHHHHHHHHhCCCCEEEEEcCC-------------------------------ChHHH--HHHHHHCCCE
Confidence 3466789999999999999988775210 12344 7889999999
Q ss_pred eeeEEEc---CCceeEEEEE
Q 045543 222 GVNYESF---VCNFYIMEFI 238 (239)
Q Consensus 222 ~~~~~~~---~~~~~vie~~ 238 (239)
+++..-+ ...+-+|.+.
T Consensus 143 i~~E~lv~e~~k~Yeii~~~ 162 (244)
T 3gnl_A 143 ITSEAILREDNKVYEIMVLA 162 (244)
T ss_dssp EEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEECCEEEEEEEEE
Confidence 8765432 2345566654
No 183
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=97.56 E-value=4.9e-05 Score=64.31 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=48.9
Q ss_pred HHHHHhhccCCCCcceEEEeCCCCCC----------------------------------------Ccccccc-ccCCcc
Q 045543 96 MNRILDYYKGFEKIKQLVDVGGGCGK----------------------------------------CGWKMFQ-KILNGD 134 (239)
Q Consensus 96 ~~~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~-~~p~~D 134 (239)
...+++.++ ..+..+|||||||+|. +.+|+.+ ++|..|
T Consensus 17 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~fD 95 (285)
T 1zq9_A 17 INSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFFD 95 (285)
T ss_dssp HHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCCCS
T ss_pred HHHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchhhc
Confidence 456677776 7777899999999999 2355554 444448
Q ss_pred eeeechhhhcCChhHHHHHHHH--------------H--HhhCCCCceEE
Q 045543 135 AILMKLILRNWDDEHCLSLLKN--------------C--YEAIPGNGKII 168 (239)
Q Consensus 135 ~~~l~~vlH~~~d~~~~~iL~~--------------~--~~aL~pgg~ll 168 (239)
+++. +.-++|+.+....+|.. + +.+++|||+++
T Consensus 96 ~vv~-nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 96 TCVA-NLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp EEEE-ECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred EEEE-ecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 7776 55556766666666643 2 36899999764
No 184
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=97.56 E-value=6.1e-05 Score=62.47 Aligned_cols=58 Identities=19% Similarity=0.271 Sum_probs=42.7
Q ss_pred CCcceEEEeCCCCCC------------------------------------Ccccccc-ccCC-c-ceeeechhhhcCCh
Q 045543 107 EKIKQLVDVGGGCGK------------------------------------CGWKMFQ-KILN-G-DAILMKLILRNWDD 147 (239)
Q Consensus 107 ~~~~~vlDvGGG~G~------------------------------------~~gD~~~-~~p~-~-D~~~l~~vlH~~~d 147 (239)
.+..+|||||||+|. +.+|+.+ +++. . |+|+...+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 456799999999998 2234433 3443 3 999976552
Q ss_pred hHHHHHHHHHHhhCCCCceEEEEeee
Q 045543 148 EHCLSLLKNCYEAIPGNGKIIIIDST 173 (239)
Q Consensus 148 ~~~~~iL~~~~~aL~pgg~lli~d~~ 173 (239)
..++++++.|+|||++++....
T Consensus 159 ----~~l~~~~~~L~pgG~l~~~~~~ 180 (269)
T 1p91_A 159 ----CKAEELARVVKPGGWVITATPG 180 (269)
T ss_dssp ----CCHHHHHHHEEEEEEEEEEEEC
T ss_pred ----hhHHHHHHhcCCCcEEEEEEcC
Confidence 3589999999999999998654
No 185
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=97.56 E-value=5.8e-05 Score=59.37 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=27.4
Q ss_pred ceeeechhhhc---C-ChhH-----HHHHHHHHHhhCCCCceEEEEee
Q 045543 134 DAILMKLILRN---W-DDEH-----CLSLLKNCYEAIPGNGKIIIIDS 172 (239)
Q Consensus 134 D~~~l~~vlH~---~-~d~~-----~~~iL~~~~~aL~pgg~lli~d~ 172 (239)
|+|++...+|. | .|.. +..+|+++++.|+|||++++..+
T Consensus 99 D~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 99 DVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp EEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 88887543332 1 2221 25889999999999999998754
No 186
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=97.54 E-value=4.8e-05 Score=62.93 Aligned_cols=65 Identities=14% Similarity=0.148 Sum_probs=51.1
Q ss_pred CCCcceEEEeCCCCCC-------------------------------------Ccccccc-ccCC-cceeeechhhhcCC
Q 045543 106 FEKIKQLVDVGGGCGK-------------------------------------CGWKMFQ-KILN-GDAILMKLILRNWD 146 (239)
Q Consensus 106 ~~~~~~vlDvGGG~G~-------------------------------------~~gD~~~-~~p~-~D~~~l~~vlH~~~ 146 (239)
+....+|+|||||.|. ...|+.. +.|. +|++++.-++|...
T Consensus 103 ~~~p~~VLDlGCG~gpLal~~~~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~LE 182 (253)
T 3frh_A 103 AETPRRVLDIACGLNPLALYERGIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPLLE 182 (253)
T ss_dssp SCCCSEEEEETCTTTHHHHHHTTCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHHHH
T ss_pred CCCCCeEEEecCCccHHHHHhccCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHHhh
Confidence 4567899999999998 3446665 4444 49999999999998
Q ss_pred hhHHHHHHHHHHhhCCCCceEEEEe
Q 045543 147 DEHCLSLLKNCYEAIPGNGKIIIID 171 (239)
Q Consensus 147 d~~~~~iL~~~~~aL~pgg~lli~d 171 (239)
+++-...+ ++.++|+|++.++..+
T Consensus 183 ~q~~~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 183 REQAGSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp HHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred hhchhhHH-HHHHHhcCCCEEEEcC
Confidence 77756666 9999999998777766
No 187
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=97.54 E-value=4e-05 Score=58.73 Aligned_cols=38 Identities=11% Similarity=0.014 Sum_probs=25.5
Q ss_pred cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEee
Q 045543 133 GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDS 172 (239)
Q Consensus 133 ~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~ 172 (239)
.|+|++...+| ...++..+.+.+ ++.|+|||++++...
T Consensus 111 ~D~i~~~~~~~-~~~~~~~~~~~~-~~~L~~gG~~~~~~~ 148 (171)
T 1ws6_A 111 FTVAFMAPPYA-MDLAALFGELLA-SGLVEAGGLYVLQHP 148 (171)
T ss_dssp EEEEEECCCTT-SCTTHHHHHHHH-HTCEEEEEEEEEEEE
T ss_pred eEEEEECCCCc-hhHHHHHHHHHh-hcccCCCcEEEEEeC
Confidence 39999998887 333333333333 499999999988654
No 188
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=97.54 E-value=5.3e-05 Score=67.15 Aligned_cols=37 Identities=14% Similarity=0.096 Sum_probs=30.7
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeee
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDST 173 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~ 173 (239)
|+|+.. ..|.+. +..+.|+++++.|||||+++|.|..
T Consensus 290 DlVisd-gsH~~~--d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 290 DIVIDD-GSHINA--HVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp EEEEEC-SCCCHH--HHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred cEEEEC-Ccccch--hHHHHHHHHHHhcCCCeEEEEEecc
Confidence 999875 557664 4568999999999999999998875
No 189
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=97.53 E-value=2.2e-05 Score=63.36 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=28.7
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecC
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTV 175 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~ 175 (239)
|+|++.. +.+....+++++++.|+|||+|++.+...+
T Consensus 142 D~v~~~~-----~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 178 (225)
T 3tr6_A 142 DLIYIDA-----DKANTDLYYEESLKLLREGGLIAVDNVLRR 178 (225)
T ss_dssp EEEEECS-----CGGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred cEEEECC-----CHHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 8887543 344457899999999999999998776654
No 190
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=97.48 E-value=3.8e-05 Score=62.85 Aligned_cols=37 Identities=11% Similarity=0.045 Sum_probs=28.6
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecC
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTV 175 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~ 175 (239)
|+|++... .+....+++++.+.|+|||++++.+...+
T Consensus 149 D~I~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 185 (239)
T 2hnk_A 149 DLFFLDAD-----KENYPNYYPLILKLLKPGGLLIADNVLWD 185 (239)
T ss_dssp EEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred CEEEEeCC-----HHHHHHHHHHHHHHcCCCeEEEEEccccC
Confidence 88887643 34456889999999999999998765443
No 191
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=97.46 E-value=0.00012 Score=65.83 Aligned_cols=77 Identities=12% Similarity=0.066 Sum_probs=54.1
Q ss_pred HHHhhccCCCCcceEEEeCCCCCC------------------------------------------Ccccccc-c--cC-
Q 045543 98 RILDYYKGFEKIKQLVDVGGGCGK------------------------------------------CGWKMFQ-K--IL- 131 (239)
Q Consensus 98 ~~~~~~~~~~~~~~vlDvGGG~G~------------------------------------------~~gD~~~-~--~p- 131 (239)
.++..++ ..+..+|||+|||+|. +.+|+.+ + ++
T Consensus 250 l~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 328 (450)
T 2yxl_A 250 VASIVLD-PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGE 328 (450)
T ss_dssp HHHHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCS
T ss_pred HHHHhcC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhcc
Confidence 3344555 6677899999999997 3455544 2 33
Q ss_pred Cc-ceeee------chhhhcCChh-------HH-------HHHHHHHHhhCCCCceEEEEeeecC
Q 045543 132 NG-DAILM------KLILRNWDDE-------HC-------LSLLKNCYEAIPGNGKIIIIDSTTV 175 (239)
Q Consensus 132 ~~-D~~~l------~~vlH~~~d~-------~~-------~~iL~~~~~aL~pgg~lli~d~~~~ 175 (239)
.. |+|++ ..++|..+|. +. ..+|+++.+.|+|||+|++.+....
T Consensus 329 ~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~ 393 (450)
T 2yxl_A 329 EVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF 393 (450)
T ss_dssp SCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred CCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 33 99996 4566654442 21 6899999999999999999876543
No 192
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=97.45 E-value=9e-05 Score=63.06 Aligned_cols=38 Identities=13% Similarity=0.176 Sum_probs=24.1
Q ss_pred ceeeechhhhcCChhHH--HHHHHHHHhhCCCCceEEEEe
Q 045543 134 DAILMKLILRNWDDEHC--LSLLKNCYEAIPGNGKIIIID 171 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~--~~iL~~~~~aL~pgg~lli~d 171 (239)
|+|++...-+.-++... ..+++.++++|+|||++++.-
T Consensus 159 DvIi~D~~~p~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 198 (294)
T 3adn_A 159 DVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp EEEEECC----------CCHHHHHHHHHTEEEEEEEEEEE
T ss_pred cEEEECCCCccCcchhccHHHHHHHHHHhcCCCCEEEEec
Confidence 99888444332222222 679999999999999998854
No 193
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=97.45 E-value=8.4e-05 Score=61.88 Aligned_cols=22 Identities=9% Similarity=0.237 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhCCCCceEEEE
Q 045543 149 HCLSLLKNCYEAIPGNGKIIII 170 (239)
Q Consensus 149 ~~~~iL~~~~~aL~pgg~lli~ 170 (239)
....+++.+++.|+|||+++++
T Consensus 148 ~~~~~l~~~~~~LkpgG~l~~~ 169 (260)
T 2ozv_A 148 LFEDWIRTASAIMVSGGQLSLI 169 (260)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCCCCEEEEE
Confidence 3678999999999999999885
No 194
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=97.44 E-value=0.00011 Score=61.30 Aligned_cols=88 Identities=13% Similarity=0.242 Sum_probs=56.2
Q ss_pred cCchHHHHHHHHHHhcccc----cHHHHHhhccCCCCcceEEEeCCCCCC------------------------------
Q 045543 76 LDSRFNEVLNTAMLSHNSI----VMNRILDYYKGFEKIKQLVDVGGGCGK------------------------------ 121 (239)
Q Consensus 76 ~~~~~~~~f~~~m~~~~~~----~~~~~~~~~~~~~~~~~vlDvGGG~G~------------------------------ 121 (239)
..|.... |...|...... .+..++..++ +.+..+|||+|||+|.
T Consensus 65 ~~p~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~ 142 (280)
T 1i9g_A 65 LRPLLVD-YVMSMPRGPQVIYPKDAAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARR 142 (280)
T ss_dssp ECCCHHH-HHTTSCSCSCCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHH
T ss_pred eCCCHHH-HHhhccccceeecHHHHHHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Confidence 3455443 33444433332 2345666777 7788899999999998
Q ss_pred ----C-c----------ccccc-ccCC-c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEee
Q 045543 122 ----C-G----------WKMFQ-KILN-G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDS 172 (239)
Q Consensus 122 ----~-~----------gD~~~-~~p~-~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~ 172 (239)
. . +|+.+ +++. . |+|++ +.++. ..+|+++.+.|+|||++++...
T Consensus 143 ~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v~~-----~~~~~--~~~l~~~~~~L~pgG~l~~~~~ 204 (280)
T 1i9g_A 143 NVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVL-----DMLAP--WEVLDAVSRLLVAGGVLMVYVA 204 (280)
T ss_dssp HHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEE-----ESSCG--GGGHHHHHHHEEEEEEEEEEES
T ss_pred HHHHhcCCCCCcEEEEECchHhcCCCCCceeEEEE-----CCcCH--HHHHHHHHHhCCCCCEEEEEeC
Confidence 1 1 12222 2332 3 88887 23333 2789999999999999999764
No 195
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=97.39 E-value=6.3e-05 Score=60.80 Aligned_cols=37 Identities=16% Similarity=0.413 Sum_probs=28.2
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecC
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTV 175 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~ 175 (239)
|++++.. +......+++++.+.|+|||.+++.+....
T Consensus 147 D~v~~d~-----~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 183 (229)
T 2avd_A 147 DVAVVDA-----DKENCSAYYERCLQLLRPGGILAVLRVLWR 183 (229)
T ss_dssp EEEEECS-----CSTTHHHHHHHHHHHEEEEEEEEEECCSGG
T ss_pred cEEEECC-----CHHHHHHHHHHHHHHcCCCeEEEEECCCcC
Confidence 8887743 344456899999999999999988776543
No 196
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=97.38 E-value=0.00032 Score=58.74 Aligned_cols=65 Identities=15% Similarity=0.146 Sum_probs=43.9
Q ss_pred CCCcceEEEeCCCCCC------------------C-----------------------ccccccccCC--cceeeechhh
Q 045543 106 FEKIKQLVDVGGGCGK------------------C-----------------------GWKMFQKILN--GDAILMKLIL 142 (239)
Q Consensus 106 ~~~~~~vlDvGGG~G~------------------~-----------------------~gD~~~~~p~--~D~~~l~~vl 142 (239)
+.+..+|||||||+|. + .+|+++ +|. .|+|++...
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~-l~~~~fD~V~sd~~- 149 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASRPHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHT-LPVERTDVIMCDVG- 149 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTT-SCCCCCSEEEECCC-
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHcCcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhH-CCCCCCcEEEEeCc-
Confidence 5667899999999998 1 223332 342 399998755
Q ss_pred hcCCh----hH-HHHHHHHHHhhCCCCc--eEEEEee
Q 045543 143 RNWDD----EH-CLSLLKNCYEAIPGNG--KIIIIDS 172 (239)
Q Consensus 143 H~~~d----~~-~~~iL~~~~~aL~pgg--~lli~d~ 172 (239)
|...+ +. ...+|+.+++.|+||| .+++..+
T Consensus 150 ~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~ 186 (265)
T 2oxt_A 150 ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVL 186 (265)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeC
Confidence 33221 11 2348999999999999 8887443
No 197
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=97.37 E-value=8.3e-05 Score=62.38 Aligned_cols=24 Identities=8% Similarity=0.236 Sum_probs=20.9
Q ss_pred HHHHHHHHhhCCCCceEEEEeeec
Q 045543 151 LSLLKNCYEAIPGNGKIIIIDSTT 174 (239)
Q Consensus 151 ~~iL~~~~~aL~pgg~lli~d~~~ 174 (239)
.++|+++.+.|+|||+|++.....
T Consensus 191 ~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 191 KELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp HHHHHHHHHHEEEEEEEEEEESCC
T ss_pred HHHHHHHHHhCCCCCEEEEEECCC
Confidence 689999999999999998876544
No 198
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=97.36 E-value=0.00011 Score=61.93 Aligned_cols=45 Identities=13% Similarity=0.284 Sum_probs=38.8
Q ss_pred cccc-ccC--Cc-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEE
Q 045543 125 KMFQ-KIL--NG-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIII 169 (239)
Q Consensus 125 D~~~-~~p--~~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli 169 (239)
|+++ ++| .. |+|++++|||+++++...+++++++++|+|||.|++
T Consensus 202 dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 202 NLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp CTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 4455 355 23 999999999999999889999999999999999987
No 199
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=97.35 E-value=0.00026 Score=59.53 Aligned_cols=35 Identities=11% Similarity=0.185 Sum_probs=30.3
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCC---C--CceEEEE
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIP---G--NGKIIII 170 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~---p--gg~lli~ 170 (239)
|+|+++.++|+.++ ...+++.+++.|+ | ||+++++
T Consensus 165 D~Ii~~dvl~~~~~--~~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 165 QVVLLADLLSFHQA--HDALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp SEEEEESCCSCGGG--HHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred CEEEEeCcccChHH--HHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 99999999987654 4689999999999 9 9998774
No 200
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=97.34 E-value=5.3e-05 Score=62.34 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=18.2
Q ss_pred HHHHHHHHhhCCCCceEEEE
Q 045543 151 LSLLKNCYEAIPGNGKIIII 170 (239)
Q Consensus 151 ~~iL~~~~~aL~pgg~lli~ 170 (239)
..+++++.+.|+|||+|++.
T Consensus 153 ~~~l~~~~~~LkpgG~l~~~ 172 (246)
T 2vdv_E 153 NTLLSEYAYVLKEGGVVYTI 172 (246)
T ss_dssp HHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHcCCCCEEEEE
Confidence 47999999999999999984
No 201
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=97.34 E-value=5e-06 Score=68.06 Aligned_cols=60 Identities=15% Similarity=0.040 Sum_probs=45.5
Q ss_pred CcceEEEeCCCCCC----------------------------------------CccccccccCC-c-ceeeechhhhcC
Q 045543 108 KIKQLVDVGGGCGK----------------------------------------CGWKMFQKILN-G-DAILMKLILRNW 145 (239)
Q Consensus 108 ~~~~vlDvGGG~G~----------------------------------------~~gD~~~~~p~-~-D~~~l~~vlH~~ 145 (239)
+..+|||+|||+|. +.+|+.+..+. . |+|++...+|..
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~ 157 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWGGP 157 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCSSG
T ss_pred CCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcCCc
Confidence 56899999999999 33455442232 3 999999999987
Q ss_pred ChhHHHHHHHHHHhhCCCCceEEE
Q 045543 146 DDEHCLSLLKNCYEAIPGNGKIII 169 (239)
Q Consensus 146 ~d~~~~~iL~~~~~aL~pgg~lli 169 (239)
++.. ..+.++++.|+|||.+++
T Consensus 158 ~~~~--~~~~~~~~~L~pgG~~i~ 179 (241)
T 3gdh_A 158 DYAT--AETFDIRTMMSPDGFEIF 179 (241)
T ss_dssp GGGG--SSSBCTTTSCSSCHHHHH
T ss_pred chhh--hHHHHHHhhcCCcceeHH
Confidence 7654 367789999999998544
No 202
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=97.34 E-value=0.00035 Score=58.86 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=43.4
Q ss_pred CCCcceEEEeCCCCCC------------------C-----------------------ccccccccCC--cceeeechhh
Q 045543 106 FEKIKQLVDVGGGCGK------------------C-----------------------GWKMFQKILN--GDAILMKLIL 142 (239)
Q Consensus 106 ~~~~~~vlDvGGG~G~------------------~-----------------------~gD~~~~~p~--~D~~~l~~vl 142 (239)
+.+..+|||||||+|. + .+|+.+ +|. .|+|++...
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~-l~~~~fD~Vvsd~~- 157 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQPNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTK-MEPFQADTVLCDIG- 157 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGG-CCCCCCSEEEECCC-
T ss_pred CCCCCEEEEeccCCCHHHHHHHHcCCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhh-CCCCCcCEEEECCC-
Confidence 5667899999999998 1 223322 343 399998765
Q ss_pred hcCC----hhH-HHHHHHHHHhhCCCCc--eEEEEe
Q 045543 143 RNWD----DEH-CLSLLKNCYEAIPGNG--KIIIID 171 (239)
Q Consensus 143 H~~~----d~~-~~~iL~~~~~aL~pgg--~lli~d 171 (239)
|... |.. ...+|+.+++.|+||| ++++..
T Consensus 158 ~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~ 193 (276)
T 2wa2_A 158 ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKV 193 (276)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence 3222 111 2358999999999999 888743
No 203
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=97.33 E-value=0.00012 Score=60.08 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=18.1
Q ss_pred HHHHHHHHhhCCCCceEEEE
Q 045543 151 LSLLKNCYEAIPGNGKIIII 170 (239)
Q Consensus 151 ~~iL~~~~~aL~pgg~lli~ 170 (239)
..+|+++++.|+|||+|++.
T Consensus 148 ~~~l~~~~~~LkpGG~l~~~ 167 (235)
T 3ckk_A 148 PTLLAEYAYVLRVGGLVYTI 167 (235)
T ss_dssp HHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHCCCCCEEEEE
Confidence 37999999999999999885
No 204
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=97.29 E-value=0.00033 Score=59.14 Aligned_cols=61 Identities=18% Similarity=0.263 Sum_probs=43.3
Q ss_pred CcceEEEeCCCCCC-----------------------------------------CccccccccC-Cc---ceeeec---
Q 045543 108 KIKQLVDVGGGCGK-----------------------------------------CGWKMFQKIL-NG---DAILMK--- 139 (239)
Q Consensus 108 ~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~~p-~~---D~~~l~--- 139 (239)
...+|||+|||+|. +.+|++++++ .. |+|++.
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPPy 202 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPY 202 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCC
T ss_pred CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCCC
Confidence 45699999999998 3466666443 34 988874
Q ss_pred ---------hhhhcCCh------hHHHHHHHHHH-hhCCCCceEEE
Q 045543 140 ---------LILRNWDD------EHCLSLLKNCY-EAIPGNGKIII 169 (239)
Q Consensus 140 ---------~vlH~~~d------~~~~~iL~~~~-~aL~pgg~lli 169 (239)
.+.| .+. ++...+++++. +.++|||++++
T Consensus 203 i~~~~~l~~~v~~-ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~ 247 (284)
T 1nv8_A 203 VKSSAHLPKDVLF-EPPEALFGGEDGLDFYREFFGRYDTSGKIVLM 247 (284)
T ss_dssp BCGGGSCTTSCCC-SCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred CCcccccChhhcc-CcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE
Confidence 3331 221 22237899999 99999999886
No 205
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=97.29 E-value=0.00024 Score=58.26 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=27.0
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHh-hCCCCceEEEEee
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYE-AIPGNGKIIIIDS 172 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~-aL~pgg~lli~d~ 172 (239)
|+|++... |. +...+|+++++ .|+|||+|++.+.
T Consensus 154 D~I~~d~~-~~----~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 154 PLIFIDNA-HA----NTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp SEEEEESS-CS----SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred CEEEECCc-hH----hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 88887654 52 34679999997 9999999999775
No 206
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=97.24 E-value=0.00048 Score=59.78 Aligned_cols=74 Identities=14% Similarity=0.118 Sum_probs=49.9
Q ss_pred HHHHHhhccCCCCcceEEEeCCCCCC------------------------------------------Ccccccc-ccCC
Q 045543 96 MNRILDYYKGFEKIKQLVDVGGGCGK------------------------------------------CGWKMFQ-KILN 132 (239)
Q Consensus 96 ~~~~~~~~~~~~~~~~vlDvGGG~G~------------------------------------------~~gD~~~-~~p~ 132 (239)
+..++.... |.+..+|||+|||+|. +.+|+.+ +.+.
T Consensus 192 a~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~ 270 (354)
T 3tma_A 192 AQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF 270 (354)
T ss_dssp HHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC
T ss_pred HHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc
Confidence 345555556 8888999999999998 3345554 2332
Q ss_pred -c-ceeeechhhhcC-C-----hhHHHHHHHHHHhhCCCCceEEEE
Q 045543 133 -G-DAILMKLILRNW-D-----DEHCLSLLKNCYEAIPGNGKIIII 170 (239)
Q Consensus 133 -~-D~~~l~~vlH~~-~-----d~~~~~iL~~~~~aL~pgg~lli~ 170 (239)
. |++++.--.+.. . .+.-..+++.+++.|+|||+++++
T Consensus 271 ~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~ 316 (354)
T 3tma_A 271 PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALL 316 (354)
T ss_dssp CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEE
T ss_pred CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 3 888884322211 1 112368999999999999999986
No 207
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=97.24 E-value=0.00015 Score=59.88 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=27.6
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeec
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTT 174 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~ 174 (239)
|+|++... ......+++++.+.|+|||.|++.+...
T Consensus 158 D~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~ 193 (247)
T 1sui_A 158 DFIFVDAD-----KDNYLNYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_dssp SEEEECSC-----STTHHHHHHHHHHHBCTTCCEEEECTTG
T ss_pred EEEEEcCc-----hHHHHHHHHHHHHhCCCCeEEEEecCCc
Confidence 88887533 2345789999999999999998766544
No 208
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=97.21 E-value=0.00015 Score=63.89 Aligned_cols=61 Identities=20% Similarity=0.181 Sum_probs=43.5
Q ss_pred cceEEEeCCCCCC----------------------------------------Ccccccc-ccCCc-ceeeechhhhcCC
Q 045543 109 IKQLVDVGGGCGK----------------------------------------CGWKMFQ-KILNG-DAILMKLILRNWD 146 (239)
Q Consensus 109 ~~~vlDvGGG~G~----------------------------------------~~gD~~~-~~p~~-D~~~l~~vlH~~~ 146 (239)
.++|||||||+|. +.+|..+ ++|+. |+++.-.+-+..-
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~l~ 163 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYGLL 163 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTTBT
T ss_pred CCEEEEeCCCccHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccccc
Confidence 4789999999998 4556655 56754 9998643332222
Q ss_pred -hhHHHHHHHHHHhhCCCCceEEE
Q 045543 147 -DEHCLSLLKNCYEAIPGNGKIII 169 (239)
Q Consensus 147 -d~~~~~iL~~~~~aL~pgg~lli 169 (239)
+.....++....+.|+|||+++-
T Consensus 164 ~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 164 HESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp TTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ccchhhhHHHHHHhhCCCCceECC
Confidence 33456888888999999998764
No 209
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=97.21 E-value=0.00018 Score=57.46 Aligned_cols=62 Identities=10% Similarity=0.074 Sum_probs=43.0
Q ss_pred CcceEEEeCCCCCC----------------------------------------CccccccccC--C-c-ceeeechhhh
Q 045543 108 KIKQLVDVGGGCGK----------------------------------------CGWKMFQKIL--N-G-DAILMKLILR 143 (239)
Q Consensus 108 ~~~~vlDvGGG~G~----------------------------------------~~gD~~~~~p--~-~-D~~~l~~vlH 143 (239)
+..+|||+|||+|. +.+|+.+..+ . . |+|++...+|
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~ 133 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 133 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence 34799999999999 3445544222 2 3 9999877765
Q ss_pred cCChhHHHHHHHHHHhh--CCCCceEEEEee
Q 045543 144 NWDDEHCLSLLKNCYEA--IPGNGKIIIIDS 172 (239)
Q Consensus 144 ~~~d~~~~~iL~~~~~a--L~pgg~lli~d~ 172 (239)
+. ....+++.+.+. |+|||++++...
T Consensus 134 -~~--~~~~~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 134 -RG--LLEETINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp -TT--THHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred -CC--cHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 22 234677777664 999999987654
No 210
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=97.20 E-value=0.00014 Score=58.05 Aligned_cols=38 Identities=8% Similarity=0.056 Sum_probs=28.2
Q ss_pred cceeeechhhhcCChhHHHHHHHHH--HhhCCCCceEEEEeee
Q 045543 133 GDAILMKLILRNWDDEHCLSLLKNC--YEAIPGNGKIIIIDST 173 (239)
Q Consensus 133 ~D~~~l~~vlH~~~d~~~~~iL~~~--~~aL~pgg~lli~d~~ 173 (239)
.|+|++...+| . .+...+++.+ .+.|+|||++++....
T Consensus 126 fD~I~~~~~~~-~--~~~~~~l~~~~~~~~LkpgG~l~i~~~~ 165 (201)
T 2ift_A 126 FDVVFLDPPFH-F--NLAEQAISLLCENNWLKPNALIYVETEK 165 (201)
T ss_dssp EEEEEECCCSS-S--CHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred CCEEEECCCCC-C--ccHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 58999887765 3 3446788888 5679999999886543
No 211
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=97.19 E-value=0.00014 Score=59.20 Aligned_cols=36 Identities=8% Similarity=0.223 Sum_probs=27.3
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeec
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTT 174 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~ 174 (239)
|+|++.... .....+++++.+.|+|||.|++.+...
T Consensus 131 D~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~dn~~~ 166 (221)
T 3dr5_A 131 QLVFGQVSP-----MDLKALVDAAWPLLRRGGALVLADALL 166 (221)
T ss_dssp EEEEECCCT-----TTHHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred CeEEEcCcH-----HHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 999875432 334578999999999999988865544
No 212
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=97.17 E-value=0.00014 Score=59.61 Aligned_cols=36 Identities=8% Similarity=0.052 Sum_probs=27.3
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeec
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTT 174 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~ 174 (239)
|+|++. .+......+++++.+.|+|||.|++.+...
T Consensus 149 D~I~~d-----~~~~~~~~~l~~~~~~L~pGG~lv~d~~~~ 184 (237)
T 3c3y_A 149 DFGFVD-----ADKPNYIKYHERLMKLVKVGGIVAYDNTLW 184 (237)
T ss_dssp EEEEEC-----SCGGGHHHHHHHHHHHEEEEEEEEEECTTG
T ss_pred CEEEEC-----CchHHHHHHHHHHHHhcCCCeEEEEecCCc
Confidence 888764 234456789999999999999887755443
No 213
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=97.15 E-value=0.00027 Score=58.12 Aligned_cols=25 Identities=20% Similarity=0.558 Sum_probs=21.0
Q ss_pred HHHHHhhccCCCCcceEEEeCCCCCC
Q 045543 96 MNRILDYYKGFEKIKQLVDVGGGCGK 121 (239)
Q Consensus 96 ~~~~~~~~~~~~~~~~vlDvGGG~G~ 121 (239)
...+++..+ ..+..+|||||||+|.
T Consensus 18 ~~~i~~~~~-~~~~~~VLDiG~G~G~ 42 (245)
T 1yub_A 18 LNQIIKQLN-LKETDTVYEIGTGKGH 42 (245)
T ss_dssp HHHHHHHCC-CCSSEEEEECSCCCSS
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCCCH
Confidence 456777777 7778899999999999
No 214
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=97.15 E-value=7.2e-05 Score=59.81 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=26.8
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeec
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTT 174 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~ 174 (239)
|++++.. +..+...+++++++.|+|||+|++.+...
T Consensus 128 D~v~~~~-----~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 163 (210)
T 3c3p_A 128 DILFMDC-----DVFNGADVLERMNRCLAKNALLIAVNALR 163 (210)
T ss_dssp EEEEEET-----TTSCHHHHHHHHGGGEEEEEEEEEESSSS
T ss_pred CEEEEcC-----ChhhhHHHHHHHHHhcCCCeEEEEECccc
Confidence 7776652 23345789999999999999998866544
No 215
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=97.12 E-value=0.00022 Score=64.53 Aligned_cols=91 Identities=10% Similarity=0.074 Sum_probs=57.3
Q ss_pred HHHHHHHhcccccHHHHHhhccCCCCcceEEEeCCCCCC-----------------------------------------
Q 045543 83 VLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGK----------------------------------------- 121 (239)
Q Consensus 83 ~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------------- 121 (239)
.|..+.-......+..++..++ ..+..+|||+|||+|.
T Consensus 77 ~~~~G~~~vQd~ss~l~a~~L~-~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~ 155 (464)
T 3m6w_A 77 FFYAGLYYIQEPSAQAVGVLLD-PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAV 155 (464)
T ss_dssp HHHTTSEEECCTTTHHHHHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEE
T ss_pred HHhCCeEEEECHHHHHHHHhcC-cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEE
Confidence 3444333333333334445555 6777899999999998
Q ss_pred Ccccccc-c--cCC-cceeee-------------chhhhcCChhHH-------HHHHHHHHhhCCCCceEEEEeeec
Q 045543 122 CGWKMFQ-K--ILN-GDAILM-------------KLILRNWDDEHC-------LSLLKNCYEAIPGNGKIIIIDSTT 174 (239)
Q Consensus 122 ~~gD~~~-~--~p~-~D~~~l-------------~~vlH~~~d~~~-------~~iL~~~~~aL~pgg~lli~d~~~ 174 (239)
+.+|..+ + .+. .|+|++ ..+...|+.++. ..||+++.+.|+|||+|+.....+
T Consensus 156 ~~~Da~~l~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 156 TQAPPRALAEAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp ECSCHHHHHHHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred EECCHHHhhhhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 2344433 1 233 399985 233444554444 789999999999999998866543
No 216
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=97.11 E-value=0.00023 Score=63.64 Aligned_cols=75 Identities=12% Similarity=0.155 Sum_probs=51.5
Q ss_pred HHhhccCCCCcceEEEeCCCCCC----------------------------------------Ccccccc-c--cCC--c
Q 045543 99 ILDYYKGFEKIKQLVDVGGGCGK----------------------------------------CGWKMFQ-K--ILN--G 133 (239)
Q Consensus 99 ~~~~~~~~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~-~--~p~--~ 133 (239)
++..++ ..+..+|||+|||+|. +.+|+.+ + ++. .
T Consensus 238 ~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~f 316 (429)
T 1sqg_A 238 CMTWLA-PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQF 316 (429)
T ss_dssp HHHHHC-CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCE
T ss_pred HHHHcC-CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCC
Confidence 334445 5667899999999998 3345544 1 332 3
Q ss_pred ceeee------chhhhcCCh-------hHH-------HHHHHHHHhhCCCCceEEEEeeec
Q 045543 134 DAILM------KLILRNWDD-------EHC-------LSLLKNCYEAIPGNGKIIIIDSTT 174 (239)
Q Consensus 134 D~~~l------~~vlH~~~d-------~~~-------~~iL~~~~~aL~pgg~lli~d~~~ 174 (239)
|+|++ ..+++..++ ++. ..+|+++.+.|+|||+|++....+
T Consensus 317 D~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 317 DRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp EEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred CEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 99986 345554433 222 589999999999999999987644
No 217
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=97.10 E-value=0.00015 Score=59.19 Aligned_cols=37 Identities=11% Similarity=0.081 Sum_probs=28.4
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecC
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTV 175 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~ 175 (239)
|++++... ..+...+++++.+.|+|||+|++.+...+
T Consensus 150 D~V~~d~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 186 (232)
T 3cbg_A 150 DLIFIDAD-----KRNYPRYYEIGLNLLRRGGLMVIDNVLWH 186 (232)
T ss_dssp EEEEECSC-----GGGHHHHHHHHHHTEEEEEEEEEECTTGG
T ss_pred CEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEeCCCcC
Confidence 88876543 34457899999999999999988766543
No 218
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=97.07 E-value=0.00021 Score=60.35 Aligned_cols=37 Identities=19% Similarity=0.186 Sum_probs=27.0
Q ss_pred ceeeechhhhcCChhHH--HHHHHHHHhhCCCCceEEEE
Q 045543 134 DAILMKLILRNWDDEHC--LSLLKNCYEAIPGNGKIIII 170 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~--~~iL~~~~~aL~pgg~lli~ 170 (239)
|+|++....+..+.+.. ..++++++++|+|||++++.
T Consensus 153 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 191 (283)
T 2i7c_A 153 DVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ 191 (283)
T ss_dssp EEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 99988544332222222 68999999999999999876
No 219
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=97.07 E-value=0.00064 Score=53.67 Aligned_cols=61 Identities=16% Similarity=0.131 Sum_probs=40.5
Q ss_pred CCCcceEEEeCCCCCC-----------------------------------CccccccccCCc-ceeeechhhhcCChhH
Q 045543 106 FEKIKQLVDVGGGCGK-----------------------------------CGWKMFQKILNG-DAILMKLILRNWDDEH 149 (239)
Q Consensus 106 ~~~~~~vlDvGGG~G~-----------------------------------~~gD~~~~~p~~-D~~~l~~vlH~~~d~~ 149 (239)
..+..+|||+|||+|. +.+|+.+ +|.. |+|++...+|.+++..
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~~~~~ 127 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMNPPFGSVVKHS 127 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEECCCC-------
T ss_pred CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEECCCchhccCch
Confidence 4456899999999998 2345544 4544 9999999999998766
Q ss_pred HHHHHHHHHhhCCCCceEEEE
Q 045543 150 CLSLLKNCYEAIPGNGKIIII 170 (239)
Q Consensus 150 ~~~iL~~~~~aL~pgg~lli~ 170 (239)
...+++++.+.+ | .++++
T Consensus 128 ~~~~l~~~~~~~--g-~~~~~ 145 (200)
T 1ne2_A 128 DRAFIDKAFETS--M-WIYSI 145 (200)
T ss_dssp CHHHHHHHHHHE--E-EEEEE
T ss_pred hHHHHHHHHHhc--C-cEEEE
Confidence 678999999998 4 45443
No 220
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=97.07 E-value=0.00023 Score=61.21 Aligned_cols=39 Identities=10% Similarity=0.272 Sum_probs=28.1
Q ss_pred ceeeechhhhcCChhH--HHHHHHHHHhhCCCCceEEEEee
Q 045543 134 DAILMKLILRNWDDEH--CLSLLKNCYEAIPGNGKIIIIDS 172 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~--~~~iL~~~~~aL~pgg~lli~d~ 172 (239)
|+|++....|...... ...+++++++.|+|||.+++.-.
T Consensus 161 DvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 161 DVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp EEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 9998865544332222 25899999999999999887643
No 221
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=97.06 E-value=0.00049 Score=62.44 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=20.6
Q ss_pred HHHHHHHHhhCCCCceEEEEeeec
Q 045543 151 LSLLKNCYEAIPGNGKIIIIDSTT 174 (239)
Q Consensus 151 ~~iL~~~~~aL~pgg~lli~d~~~ 174 (239)
.+||+++.+.|+|||+|++....+
T Consensus 226 ~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 226 RELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp HHHHHHHHHHEEEEEEEEEEESCC
T ss_pred HHHHHHHHHhcCCCCEEEEecccC
Confidence 578999999999999998876544
No 222
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=97.02 E-value=0.00013 Score=67.71 Aligned_cols=44 Identities=9% Similarity=0.085 Sum_probs=36.7
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCC
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVI 177 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~ 177 (239)
|+|++..+||+.+|.+...-+.++.+.|+++++.++...+..+.
T Consensus 136 D~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~e~ 179 (569)
T 4azs_A 136 DLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVILELAVKEE 179 (569)
T ss_dssp SEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCTTS
T ss_pred cEEEECcchhcCCCHHHHHHHHHHHHHhccccceeeEEeccccc
Confidence 99999999999998876666777888899999988887665543
No 223
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=97.02 E-value=0.00027 Score=59.24 Aligned_cols=65 Identities=15% Similarity=0.163 Sum_probs=48.0
Q ss_pred CCCcceEEEeCCCCCC-----------------------------------------Cccccccc-cCCc-ceeeechhh
Q 045543 106 FEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQK-ILNG-DAILMKLIL 142 (239)
Q Consensus 106 ~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~-~p~~-D~~~l~~vl 142 (239)
+.+..+|||+|||+|. +.+|.++. .+.. |+|++....
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 5667899999999999 34566553 2223 888776442
Q ss_pred hcCChhHHHHHHHHHHhhCCCCceEEEEeeecCC
Q 045543 143 RNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVV 176 (239)
Q Consensus 143 H~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~ 176 (239)
....+++++.+.|+|||++++.+....+
T Consensus 197 ------~~~~~l~~~~~~LkpgG~l~~s~~~~~~ 224 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLKDRGVIHYHETVAEK 224 (272)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEEGG
T ss_pred ------cHHHHHHHHHHHcCCCCEEEEEEcCccc
Confidence 3457899999999999999988776543
No 224
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=96.99 E-value=0.00065 Score=54.85 Aligned_cols=29 Identities=14% Similarity=0.244 Sum_probs=25.2
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEE
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIII 170 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~ 170 (239)
|+|++...+|+.. +++.+.|+|||++++.
T Consensus 165 D~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~ 193 (227)
T 1r18_A 165 NAIHVGAAAPDTP--------TELINQLASGGRLIVP 193 (227)
T ss_dssp EEEEECSCBSSCC--------HHHHHTEEEEEEEEEE
T ss_pred cEEEECCchHHHH--------HHHHHHhcCCCEEEEE
Confidence 9999999988765 6788999999999885
No 225
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=96.94 E-value=0.00049 Score=55.37 Aligned_cols=30 Identities=17% Similarity=0.162 Sum_probs=25.0
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIID 171 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d 171 (239)
|+|++...+|+. ++++++.|+|||++++..
T Consensus 153 D~i~~~~~~~~~--------~~~~~~~LkpgG~lv~~~ 182 (226)
T 1i1n_A 153 DAIHVGAAAPVV--------PQALIDQLKPGGRLILPV 182 (226)
T ss_dssp EEEEECSBBSSC--------CHHHHHTEEEEEEEEEEE
T ss_pred CEEEECCchHHH--------HHHHHHhcCCCcEEEEEE
Confidence 999988888755 467889999999999864
No 226
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=96.92 E-value=0.00025 Score=59.58 Aligned_cols=37 Identities=11% Similarity=0.083 Sum_probs=25.8
Q ss_pred ceeeechhhhcCChhH--HHHHHHHHHhhCCCCceEEEE
Q 045543 134 DAILMKLILRNWDDEH--CLSLLKNCYEAIPGNGKIIII 170 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~--~~~iL~~~~~aL~pgg~lli~ 170 (239)
|+|++--..+..+.+. ...++++++++|+|||.+++.
T Consensus 150 D~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~ 188 (275)
T 1iy9_A 150 DVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ 188 (275)
T ss_dssp EEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 8888844333222111 257899999999999998875
No 227
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=96.89 E-value=0.00038 Score=59.74 Aligned_cols=38 Identities=16% Similarity=0.033 Sum_probs=22.9
Q ss_pred ceeeechhhhcCChhHH--HHHHHHHHhhCCCCceEEEEe
Q 045543 134 DAILMKLILRNWDDEHC--LSLLKNCYEAIPGNGKIIIID 171 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~--~~iL~~~~~aL~pgg~lli~d 171 (239)
|+|++...-|.-+++.. ..+++++++.|+|||++++..
T Consensus 183 D~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 183 DVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp EEEEECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred eEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 88887443222122221 689999999999999998854
No 228
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=96.89 E-value=0.00096 Score=54.95 Aligned_cols=25 Identities=16% Similarity=0.595 Sum_probs=20.2
Q ss_pred HHHHHhhccCCCCcceEEEeCCCCCC
Q 045543 96 MNRILDYYKGFEKIKQLVDVGGGCGK 121 (239)
Q Consensus 96 ~~~~~~~~~~~~~~~~vlDvGGG~G~ 121 (239)
...+++..+ ..+..+|||||||+|.
T Consensus 19 ~~~i~~~~~-~~~~~~VLDiG~G~G~ 43 (244)
T 1qam_A 19 IDKIMTNIR-LNEHDNIFEIGSGKGH 43 (244)
T ss_dssp HHHHHTTCC-CCTTCEEEEECCTTSH
T ss_pred HHHHHHhCC-CCCCCEEEEEeCCchH
Confidence 456666666 6777899999999999
No 229
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=96.85 E-value=0.0016 Score=57.46 Aligned_cols=75 Identities=8% Similarity=0.022 Sum_probs=48.5
Q ss_pred HHHHHhhccCCCCcceEEEeCCCCCC---------------------------------CccccccccC-Cc-ceeeec-
Q 045543 96 MNRILDYYKGFEKIKQLVDVGGGCGK---------------------------------CGWKMFQKIL-NG-DAILMK- 139 (239)
Q Consensus 96 ~~~~~~~~~~~~~~~~vlDvGGG~G~---------------------------------~~gD~~~~~p-~~-D~~~l~- 139 (239)
+..+++.++ .....+|||+|||+|. +.+|+++..+ .. |+|+..
T Consensus 28 ~~~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a~~~~~~~~D~~~~~~~~~fD~Ii~NP 106 (421)
T 2ih2_A 28 VDFMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWEPGEAFDLILGNP 106 (421)
T ss_dssp HHHHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEEEESCGGGCCCSSCEEEEEECC
T ss_pred HHHHHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhCCCCcEEeCChhhcCccCCCCEEEECc
Confidence 344555555 4455699999999999 2456665333 23 999983
Q ss_pred ---------hhhhcCChhH-----------------HHHHHHHHHhhCCCCceEEEEe
Q 045543 140 ---------LILRNWDDEH-----------------CLSLLKNCYEAIPGNGKIIIID 171 (239)
Q Consensus 140 ---------~vlH~~~d~~-----------------~~~iL~~~~~aL~pgg~lli~d 171 (239)
+..++.+++. ...+++++.+.|+|||+++++-
T Consensus 107 Py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~ 164 (421)
T 2ih2_A 107 PYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVV 164 (421)
T ss_dssp CCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEE
Confidence 1111122222 2267999999999999998864
No 230
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=96.84 E-value=0.001 Score=57.51 Aligned_cols=65 Identities=12% Similarity=0.229 Sum_probs=48.8
Q ss_pred CCcceEEEeCCCCCC---------------------------------------------CccccccccC-Cc-ceeeec
Q 045543 107 EKIKQLVDVGGGCGK---------------------------------------------CGWKMFQKIL-NG-DAILMK 139 (239)
Q Consensus 107 ~~~~~vlDvGGG~G~---------------------------------------------~~gD~~~~~p-~~-D~~~l~ 139 (239)
....+|+|+|||+|. +.+|.+++.+ .. |+|+..
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~N 208 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD 208 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEEC
Confidence 456899999999998 3456665444 23 999988
Q ss_pred hhhhcCChhHH----------------HHHHHHHHhhCCCCceEEEEe
Q 045543 140 LILRNWDDEHC----------------LSLLKNCYEAIPGNGKIIIID 171 (239)
Q Consensus 140 ~vlH~~~d~~~----------------~~iL~~~~~aL~pgg~lli~d 171 (239)
--++.++.++. ..+++++.+.|+|||+++++-
T Consensus 209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~ 256 (344)
T 2f8l_A 209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV 256 (344)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEE
Confidence 77766654432 268999999999999998864
No 231
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=96.82 E-value=0.00038 Score=59.13 Aligned_cols=20 Identities=20% Similarity=0.488 Sum_probs=18.3
Q ss_pred HHHHHHHHhhCCCCceEEEE
Q 045543 151 LSLLKNCYEAIPGNGKIIII 170 (239)
Q Consensus 151 ~~iL~~~~~aL~pgg~lli~ 170 (239)
..+++++++.|+|||++++.
T Consensus 185 ~~~l~~~~~~LkpgG~lv~~ 204 (296)
T 1inl_A 185 EEFYQACYDALKEDGVFSAE 204 (296)
T ss_dssp HHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEE
Confidence 68999999999999999885
No 232
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=96.82 E-value=0.00045 Score=59.79 Aligned_cols=37 Identities=11% Similarity=0.070 Sum_probs=25.9
Q ss_pred ceeeechhhhcCChhH--HHHHHHHHHhhCCCCceEEEE
Q 045543 134 DAILMKLILRNWDDEH--CLSLLKNCYEAIPGNGKIIII 170 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~--~~~iL~~~~~aL~pgg~lli~ 170 (239)
|+|++....+....+. ...++++++++|+|||+|++.
T Consensus 196 DlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 196 DAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred cEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9998744321111111 368999999999999999885
No 233
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=96.82 E-value=0.00038 Score=59.84 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=25.5
Q ss_pred ceeeechhhhcCC-hhHH--HHHHHHHHhhCCCCceEEEE
Q 045543 134 DAILMKLILRNWD-DEHC--LSLLKNCYEAIPGNGKIIII 170 (239)
Q Consensus 134 D~~~l~~vlH~~~-d~~~--~~iL~~~~~aL~pgg~lli~ 170 (239)
|+|++... +.+. .+.. ..+++++++.|+|||.+++.
T Consensus 191 DvIi~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 229 (321)
T 2pt6_A 191 DVIIVDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQ 229 (321)
T ss_dssp EEEEEECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEECCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 88887542 2222 1211 68999999999999999885
No 234
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=96.81 E-value=0.00039 Score=59.53 Aligned_cols=38 Identities=8% Similarity=0.076 Sum_probs=28.2
Q ss_pred ceeeechhhhc---CChhH--HHHHHHHHHhhCCCCceEEEEe
Q 045543 134 DAILMKLILRN---WDDEH--CLSLLKNCYEAIPGNGKIIIID 171 (239)
Q Consensus 134 D~~~l~~vlH~---~~d~~--~~~iL~~~~~aL~pgg~lli~d 171 (239)
|+|++....|. -+.+. ...++++++++|+|||++++.-
T Consensus 153 D~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 153 DVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred cEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 99998766544 11111 3689999999999999999863
No 235
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=96.81 E-value=0.00039 Score=59.31 Aligned_cols=38 Identities=16% Similarity=0.009 Sum_probs=24.4
Q ss_pred ceeeechhhhcCChh--HHHHHHHHHHhhCCCCceEEEEe
Q 045543 134 DAILMKLILRNWDDE--HCLSLLKNCYEAIPGNGKIIIID 171 (239)
Q Consensus 134 D~~~l~~vlH~~~d~--~~~~iL~~~~~aL~pgg~lli~d 171 (239)
|+|++....|..+.. ....+++++++.|+|||++++..
T Consensus 170 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 170 DVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 888885443322211 23578999999999999998854
No 236
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=96.74 E-value=0.0017 Score=54.75 Aligned_cols=63 Identities=14% Similarity=0.074 Sum_probs=45.9
Q ss_pred CCCcceEEEeCCCCCC-----------------------------------------CccccccccCC--cceeeechhh
Q 045543 106 FEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQKILN--GDAILMKLIL 142 (239)
Q Consensus 106 ~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~~p~--~D~~~l~~vl 142 (239)
+.+..+|||+|||+|. +.+|.++-.++ .|.|++..
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~-- 200 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGY-- 200 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECC--
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECC--
Confidence 4567899999999999 55677652233 48877642
Q ss_pred hcCChhHHHHHHHHHHhhCCCCceEEEEeeec
Q 045543 143 RNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTT 174 (239)
Q Consensus 143 H~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~ 174 (239)
+ ..+...|..+.+.|+|||.|.+++.+.
T Consensus 201 ---p-~~~~~~l~~a~~~lk~gG~ih~~~~~~ 228 (278)
T 3k6r_A 201 ---V-VRTHEFIPKALSIAKDGAIIHYHNTVP 228 (278)
T ss_dssp ---C-SSGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred ---C-CcHHHHHHHHHHHcCCCCEEEEEeeec
Confidence 2 223467888999999999998887764
No 237
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=96.72 E-value=0.00066 Score=61.20 Aligned_cols=92 Identities=11% Similarity=0.119 Sum_probs=56.4
Q ss_pred HHHHHHHHhcccccHHHHHhhccCCCCcceEEEeCCCCCC----------------------------------------
Q 045543 82 EVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGK---------------------------------------- 121 (239)
Q Consensus 82 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGGG~G~---------------------------------------- 121 (239)
..|..+.-......+..++..++ ..+..+|||+|||+|.
T Consensus 80 ~~~~~G~~~vQd~ss~l~~~~L~-~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv 158 (456)
T 3m4x_A 80 FLHQAGYEYSQEPSAMIVGTAAA-AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNA 158 (456)
T ss_dssp HHHHTTSCEECCTTTHHHHHHHC-CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSE
T ss_pred hHHhCCcEEEECHHHHHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCce
Confidence 34544433333333334455555 6777899999999997
Q ss_pred --Ccccccc--c-cCCc-ceeeec------hhh-------hcCChhH-------HHHHHHHHHhhCCCCceEEEEeeec
Q 045543 122 --CGWKMFQ--K-ILNG-DAILMK------LIL-------RNWDDEH-------CLSLLKNCYEAIPGNGKIIIIDSTT 174 (239)
Q Consensus 122 --~~gD~~~--~-~p~~-D~~~l~------~vl-------H~~~d~~-------~~~iL~~~~~aL~pgg~lli~d~~~ 174 (239)
+.+|..+ + .+.. |+|++- .++ ..|+.++ ...||+++.+.|+|||+|+.....+
T Consensus 159 ~v~~~Da~~l~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 159 IVTNHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp EEECCCHHHHHHHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred EEEeCCHHHhhhhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 2345433 1 2333 998862 122 2333322 2489999999999999998876543
No 238
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=96.72 E-value=0.0014 Score=61.25 Aligned_cols=91 Identities=21% Similarity=0.196 Sum_probs=60.6
Q ss_pred ccccccCchHHHHHHHHHHhcccccHHHHHhhcc---CCCCcceEEEeCCCCCC--------------------------
Q 045543 71 YEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYK---GFEKIKQLVDVGGGCGK-------------------------- 121 (239)
Q Consensus 71 ~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~---~~~~~~~vlDvGGG~G~-------------------------- 121 (239)
|+.+++||-.-+.|.+|+.. .+.+..+ .-.+...|+|||+|+|.
T Consensus 324 YevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~ 396 (637)
T 4gqb_A 324 YEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN 396 (637)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH
T ss_pred hhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH
Confidence 44456788777778887753 2222211 02345789999999997
Q ss_pred -------------------Ccccccc-ccCC-cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEE
Q 045543 122 -------------------CGWKMFQ-KILN-GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKII 168 (239)
Q Consensus 122 -------------------~~gD~~~-~~p~-~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~ll 168 (239)
+.||+.+ ..|+ .|+++.-..=.....|-...+|-...+-|+|||.++
T Consensus 397 A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 397 AVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp HHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred HHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 7788877 7886 499886554332334445567777788999998753
No 239
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=96.70 E-value=0.0033 Score=53.33 Aligned_cols=68 Identities=13% Similarity=0.164 Sum_probs=45.2
Q ss_pred HHHHHhhccCCCCcceEEEeCCCCCC---------------------------------------Ccccccc-ccCCcce
Q 045543 96 MNRILDYYKGFEKIKQLVDVGGGCGK---------------------------------------CGWKMFQ-KILNGDA 135 (239)
Q Consensus 96 ~~~~~~~~~~~~~~~~vlDvGGG~G~---------------------------------------~~gD~~~-~~p~~D~ 135 (239)
...+++..+ ..+..+|||||||+|. +.+|+.+ +.+..|+
T Consensus 31 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~D~ 109 (299)
T 2h1r_A 31 LDKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKFDV 109 (299)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCCSE
T ss_pred HHHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccCCE
Confidence 456666666 6777899999999999 3455554 3333488
Q ss_pred eeechhhhcCChhHHHHHHH---------------HHHhhCCCCc
Q 045543 136 ILMKLILRNWDDEHCLSLLK---------------NCYEAIPGNG 165 (239)
Q Consensus 136 ~~l~~vlH~~~d~~~~~iL~---------------~~~~aL~pgg 165 (239)
|++ +.-++|+.+....+|+ .+.+.++|+|
T Consensus 110 Vv~-n~py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 110 CTA-NIPYKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp EEE-ECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred EEE-cCCcccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 876 5556677777777773 3567787765
No 240
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=96.46 E-value=0.0018 Score=52.05 Aligned_cols=30 Identities=27% Similarity=0.233 Sum_probs=25.3
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIID 171 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d 171 (239)
|+|++...+|+. ++++.+.|+|||++++.-
T Consensus 164 D~I~~~~~~~~~--------~~~~~~~LkpgG~lv~~~ 193 (227)
T 2pbf_A 164 DAIHVGASASEL--------PEILVDLLAENGKLIIPI 193 (227)
T ss_dssp EEEEECSBBSSC--------CHHHHHHEEEEEEEEEEE
T ss_pred CEEEECCchHHH--------HHHHHHhcCCCcEEEEEE
Confidence 999988888754 578899999999999864
No 241
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=96.43 E-value=0.0054 Score=48.37 Aligned_cols=55 Identities=16% Similarity=0.139 Sum_probs=40.8
Q ss_pred CCCcceEEEeCCCCCC---------------------------------------CccccccccCCc-ceeeechhhhcC
Q 045543 106 FEKIKQLVDVGGGCGK---------------------------------------CGWKMFQKILNG-DAILMKLILRNW 145 (239)
Q Consensus 106 ~~~~~~vlDvGGG~G~---------------------------------------~~gD~~~~~p~~-D~~~l~~vlH~~ 145 (239)
..+..+|||+|||+|. +.+|+.+ +|.. |+|++.-.+|.+
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~ 125 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE-FNSRVDIVIMNPPFGSQ 125 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG-CCCCCSEEEECCCCSSS
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHH-cCCCCCEEEEcCCCccc
Confidence 3456799999999998 2234433 4434 999998888888
Q ss_pred ChhHHHHHHHHHHhhC
Q 045543 146 DDEHCLSLLKNCYEAI 161 (239)
Q Consensus 146 ~d~~~~~iL~~~~~aL 161 (239)
.......+|+++.+.+
T Consensus 126 ~~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 126 RKHADRPFLLKAFEIS 141 (207)
T ss_dssp STTTTHHHHHHHHHHC
T ss_pred cCCchHHHHHHHHHhc
Confidence 7655578889988888
No 242
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=96.33 E-value=0.034 Score=47.96 Aligned_cols=81 Identities=10% Similarity=0.110 Sum_probs=55.8
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHH---h-hccCC-ccccChhh
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIM---L-MQLSG-EKERTKQE 208 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~m---l-~~~~~-g~~rt~~e 208 (239)
.+++.-.+|+.++.+++..+|+.+.+.. |+|.+++.|.+.+..+..+ +...+--++ . ....+ ....|.++
T Consensus 196 tl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~----fg~~m~~~l~~~rg~~l~~~~~y~s~~~ 270 (334)
T 1rjd_A 196 TIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDR----FGAIMQSNLKESRNLEMPTLMTYNSKEK 270 (334)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCC----HHHHHHHHHHHHHCCCCTTTTTTCSHHH
T ss_pred EEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcch----HHHHHHHHhhcccCCcccccccCCCHHH
Confidence 7899999999999999999999999987 7888889999877432221 111110000 0 00111 12347788
Q ss_pred ccHHHHHhhCCCc
Q 045543 209 YYGMALTAKNGFK 221 (239)
Q Consensus 209 ~~~~~ll~~aGf~ 221 (239)
. .+.|.++||+
T Consensus 271 ~--~~rl~~~Gf~ 281 (334)
T 1rjd_A 271 Y--ASRWSAAPNV 281 (334)
T ss_dssp H--HGGGTTSSEE
T ss_pred H--HHHHHHCCCC
Confidence 8 9999999997
No 243
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=96.09 E-value=0.011 Score=51.64 Aligned_cols=16 Identities=19% Similarity=0.061 Sum_probs=14.4
Q ss_pred CCCcceEEEeCCCCCC
Q 045543 106 FEKIKQLVDVGGGCGK 121 (239)
Q Consensus 106 ~~~~~~vlDvGGG~G~ 121 (239)
+.+..+|||+|||+|.
T Consensus 215 ~~~~~~vLD~gCGsG~ 230 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGT 230 (373)
T ss_dssp TCCSCCEEETTCTTCH
T ss_pred cCCCCEEEEccCcCcH
Confidence 5677899999999999
No 244
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=96.08 E-value=0.0069 Score=41.22 Aligned_cols=57 Identities=12% Similarity=0.220 Sum_probs=41.3
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC-----CCCCCCeEecChhhHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS-----AGDDRRLQRLAPVAKYV 63 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~-----~~~~~~~y~~t~~s~~l 63 (239)
|.+.|.+.++|.++|+.|||+++|+ +...+.+.|.-|... ....++.|...+....+
T Consensus 15 IL~~L~~~~pg~~~t~~eLA~~Lgv----sr~tV~~~L~~Le~~G~I~~~g~~~~~W~i~~~~~~~ 76 (81)
T 1qbj_A 15 ILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEAGTPPLWKIAVSTQAW 76 (81)
T ss_dssp HHHHHHHHCTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEESSSSCEEEEC------
T ss_pred HHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecCCCCCeeEEeCcHHhc
Confidence 5567777665668999999999999 999999999999775 23445888888766443
No 245
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=96.07 E-value=0.0038 Score=52.01 Aligned_cols=30 Identities=13% Similarity=0.207 Sum_probs=23.1
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEE
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIII 170 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~ 170 (239)
|+|++. .+|.. ..+++++++|+|||.+++.
T Consensus 141 D~Ii~d-----~~dp~--~~~~~~~~~L~pgG~lv~~ 170 (262)
T 2cmg_A 141 DLIFCL-----QEPDI--HRIDGLKRMLKEDGVFISV 170 (262)
T ss_dssp EEEEES-----SCCCH--HHHHHHHTTEEEEEEEEEE
T ss_pred CEEEEC-----CCChH--HHHHHHHHhcCCCcEEEEE
Confidence 666653 34443 4899999999999999885
No 246
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=96.07 E-value=0.0064 Score=52.40 Aligned_cols=25 Identities=16% Similarity=0.285 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhhCCCCceEEEEeee
Q 045543 149 HCLSLLKNCYEAIPGNGKIIIIDST 173 (239)
Q Consensus 149 ~~~~iL~~~~~aL~pgg~lli~d~~ 173 (239)
+...+++++.+.|+|||.+++....
T Consensus 250 ~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 250 HLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp HHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred HHHHHHHHHHHhcCcCcEEEEEECC
Confidence 4568999999999999997775443
No 247
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=96.03 E-value=0.0045 Score=52.45 Aligned_cols=24 Identities=13% Similarity=-0.029 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHhhCCCCceEEEEe
Q 045543 148 EHCLSLLKNCYEAIPGNGKIIIID 171 (239)
Q Consensus 148 ~~~~~iL~~~~~aL~pgg~lli~d 171 (239)
+.+..+|+.+++.|+|||++++..
T Consensus 148 ~l~~~~l~~a~r~LkpGG~~v~~~ 171 (290)
T 2xyq_A 148 GFFTYLCGFIKQKLALGGSIAVKI 171 (290)
T ss_dssp THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 345689999999999999999864
No 248
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=96.00 E-value=0.0028 Score=41.43 Aligned_cols=49 Identities=10% Similarity=0.254 Sum_probs=39.3
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---CCCCCCeEecC
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---AGDDRRLQRLA 57 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~~~~~~~y~~t 57 (239)
|.+.|.+++ +++|..|||+++|+ +...+.+++..|... .....|.|+++
T Consensus 15 IL~~L~~~~--~~~s~~eLA~~lgl----sr~tv~~~l~~L~~~G~I~~~~~G~y~lg 66 (67)
T 2heo_A 15 ILQVLSDDG--GPVAIFQLVKKCQV----PKKTLNQVLYRLKKEDRVSSPSPKYWSIG 66 (67)
T ss_dssp HHHHHHHHC--SCEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEEETTEEEEC
T ss_pred HHHHHHHcC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEecCCCceEeeC
Confidence 667787643 58999999999999 999999999999886 22445778754
No 249
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=96.00 E-value=0.0026 Score=53.38 Aligned_cols=37 Identities=14% Similarity=0.140 Sum_probs=25.0
Q ss_pred ceeeechhhhcCChhH--HHHHHHHHHhhCCCCceEEEE
Q 045543 134 DAILMKLILRNWDDEH--CLSLLKNCYEAIPGNGKIIII 170 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~--~~~iL~~~~~aL~pgg~lli~ 170 (239)
|+|++....|..+.+. ...+++++++.|+|||.+++.
T Consensus 154 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 192 (281)
T 1mjf_A 154 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 192 (281)
T ss_dssp EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 8888754433222222 268899999999999999886
No 250
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=95.98 E-value=0.0029 Score=55.45 Aligned_cols=25 Identities=4% Similarity=0.022 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHhhCCCCceEEEEee
Q 045543 148 EHCLSLLKNCYEAIPGNGKIIIIDS 172 (239)
Q Consensus 148 ~~~~~iL~~~~~aL~pgg~lli~d~ 172 (239)
+....+++++.+.|+|||.|++...
T Consensus 302 ~~~~~~l~~~~~~LkpgG~l~~~~~ 326 (382)
T 1wxx_A 302 RAYKEVNLRAIKLLKEGGILATASC 326 (382)
T ss_dssp HHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 4557899999999999999988764
No 251
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=95.98 E-value=0.012 Score=49.25 Aligned_cols=75 Identities=11% Similarity=0.145 Sum_probs=47.8
Q ss_pred HHHhhccCCCCcceEEEeCCCCCC------------------Ccccc--------------c------c--ccCC--cce
Q 045543 98 RILDYYKGFEKIKQLVDVGGGCGK------------------CGWKM--------------F------Q--KILN--GDA 135 (239)
Q Consensus 98 ~~~~~~~~~~~~~~vlDvGGG~G~------------------~~gD~--------------~------~--~~p~--~D~ 135 (239)
.+.+..- +....+|||+|||+|. ++.|. . + .++. .|+
T Consensus 65 ei~ek~~-l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~Dl 143 (277)
T 3evf_A 65 WFHERGY-VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDT 143 (277)
T ss_dssp HHHHTTS-SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSE
T ss_pred HHHHhCC-CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccE
Confidence 4444443 6777899999999999 22221 0 0 1222 388
Q ss_pred eeechhhh---cCChh-HHHHHHHHHHhhCCCC-ceEEEEeeec
Q 045543 136 ILMKLILR---NWDDE-HCLSLLKNCYEAIPGN-GKIIIIDSTT 174 (239)
Q Consensus 136 ~~l~~vlH---~~~d~-~~~~iL~~~~~aL~pg-g~lli~d~~~ 174 (239)
|+.....| .|-|+ ....+|+-+.+.|+|| |.+++ ..+.
T Consensus 144 VlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~-KVf~ 186 (277)
T 3evf_A 144 LLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV-KVLA 186 (277)
T ss_dssp EEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE-EESC
T ss_pred EEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE-EecC
Confidence 88766444 13233 3346789999999999 99887 4443
No 252
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=95.93 E-value=0.0091 Score=64.04 Aligned_cols=82 Identities=11% Similarity=0.087 Sum_probs=31.9
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHH
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMA 213 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ 213 (239)
|+|+.+++||.-++. ...|+++++.|+|||++++.+...+..-.. ...+++-. ...++...+.++| .+
T Consensus 1313 dlvia~~vl~~t~~~--~~~l~~~~~lL~p~G~l~~~e~~~~~~~g~-----~~~~~~~~---~r~~~~~~~~~~w--~~ 1380 (2512)
T 2vz8_A 1313 DLLVCNCALATLGDP--AVAVGNMAATLKEGGFLLLHTLLAGHPLGE-----MVGFLTSP---EQGGRHLLSQDQW--ES 1380 (2512)
T ss_dssp CEEEEECC----------------------CCEEEEEEC----------------------------------CTT--TT
T ss_pred eEEEEcccccccccH--HHHHHHHHHhcCCCcEEEEEeccccccccc-----cccccccc---cccCCcccCHHHH--HH
Confidence 999999999965543 478999999999999999987532110000 00000000 0001234577899 99
Q ss_pred HHhhCCCceeeEEE
Q 045543 214 LTAKNGFKGVNYES 227 (239)
Q Consensus 214 ll~~aGf~~~~~~~ 227 (239)
+|.++||..+....
T Consensus 1381 ~l~~~gf~~~~~~~ 1394 (2512)
T 2vz8_A 1381 LFAGASLHLVALKR 1394 (2512)
T ss_dssp SSTTTTEEEEEEEE
T ss_pred HHHhCCCceeeecc
Confidence 99999999876543
No 253
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=95.75 E-value=0.0041 Score=54.75 Aligned_cols=25 Identities=4% Similarity=0.098 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHhhCCCCceEEEEee
Q 045543 148 EHCLSLLKNCYEAIPGNGKIIIIDS 172 (239)
Q Consensus 148 ~~~~~iL~~~~~aL~pgg~lli~d~ 172 (239)
.....+++++.+.|+|||+|++...
T Consensus 312 ~~~~~~l~~~~~~LkpgG~lv~~~~ 336 (396)
T 2as0_A 312 RAYFNVNFAGLNLVKDGGILVTCSC 336 (396)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 4567899999999999999988765
No 254
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=95.60 E-value=0.014 Score=42.21 Aligned_cols=55 Identities=15% Similarity=0.151 Sum_probs=46.5
Q ss_pred cchHhHhcCCCCCCCHHHHHHhC--CCCCCCChhhHHHHHHHhccC---CCCCCCeEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQM--PSHNPNAAVMLDRVLRRSLSS---AGDDRRLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~--g~~~~~~~~~l~rlL~~L~~~---~~~~~~~y~~t~~s~~l~ 64 (239)
|.+.|.+. +++|+.+||+.+ ++ ++..+.+-|+.|... .....+.|.+|+.++.++
T Consensus 18 IL~~L~~~---g~~s~~eLA~~l~~gi----S~~aVs~rL~~Le~~GLV~~~~rg~Y~LT~~G~~~l 77 (111)
T 3b73_A 18 ILEIIHEE---GNGSPKELEDRDEIRI----SKSSVSRRLKKLADHDLLQPLANGVYVITEEGEAYL 77 (111)
T ss_dssp HHHHHHHH---SCBCHHHHHTSTTCCS----CHHHHHHHHHHHHHTTSEEECSTTCEEECHHHHHHH
T ss_pred HHHHHHHc---CCCCHHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEecCCceEEECchHHHHH
Confidence 56778764 699999999999 99 999999999999987 223445899999999887
No 255
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=95.60 E-value=0.0052 Score=51.53 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=43.8
Q ss_pred ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C-CCCCCeEecChhhHHH
Q 045543 2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A-GDDRRLQRLAPVAKYV 63 (239)
Q Consensus 2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~-~~~~~~y~~t~~s~~l 63 (239)
.|.+.|++.+ +++|+.|||+++|+ +...+.|+|+.|+.. . ...+++|.+++....|
T Consensus 34 ~IL~~l~~~~--~~ltl~eia~~lgl----~ksTv~RlL~tL~~~G~v~~~~~~~Y~LG~~~~~l 92 (275)
T 3mq0_A 34 RILDLVAGSP--RDLTAAELTRFLDL----PKSSAHGLLAVMTELDLLARSADGTLRIGPHSLRW 92 (275)
T ss_dssp HHHHHHHHCS--SCEEHHHHHHHHTC----C--CHHHHHHHHHHTTSEEECTTSEEEECTHHHHH
T ss_pred HHHHHHhhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEECCCCcEEehHHHHHH
Confidence 4678888754 68999999999999 999999999999998 2 2235789999876554
No 256
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=95.55 E-value=0.0072 Score=40.66 Aligned_cols=52 Identities=13% Similarity=0.265 Sum_probs=40.0
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC-----CCCCCCeEecCh
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS-----AGDDRRLQRLAP 58 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~-----~~~~~~~y~~t~ 58 (239)
|.+.|.+.+++.++|+.|||+++|+ +...+.+.|+-|... ....++.|..+|
T Consensus 19 IL~~L~~~~~~~~~t~~eLA~~Lgv----s~~tV~~~L~~L~~~G~I~~~g~~~~~W~i~~ 75 (77)
T 1qgp_A 19 ILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEAGTPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHCSSSCEEHHHHHHHHCC----CHHHHHHHHHHHHHHTSEEEECSSSCEEEECC
T ss_pred HHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecCCCCCceEecC
Confidence 4566777644458999999999999 999999999999764 234457787665
No 257
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=95.54 E-value=0.0095 Score=52.57 Aligned_cols=66 Identities=11% Similarity=0.104 Sum_probs=44.2
Q ss_pred CcceEEEeCCCCCC--------------------------------------Ccccccccc---CC-cceeeechhhhcC
Q 045543 108 KIKQLVDVGGGCGK--------------------------------------CGWKMFQKI---LN-GDAILMKLILRNW 145 (239)
Q Consensus 108 ~~~~vlDvGGG~G~--------------------------------------~~gD~~~~~---p~-~D~~~l~~vlH~~ 145 (239)
+..+|||+|||+|. ..+|.++.+ +. .|+|++---....
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~ 293 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTLVK 293 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCCCS
T ss_pred CCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcCCC
Confidence 46899999999999 245666522 22 3888863211000
Q ss_pred C-------hhHHHHHHHHHHhhCCCCceEEEEeee
Q 045543 146 D-------DEHCLSLLKNCYEAIPGNGKIIIIDST 173 (239)
Q Consensus 146 ~-------d~~~~~iL~~~~~aL~pgg~lli~d~~ 173 (239)
+ -..-..+++.+.+.|+|||+|+++...
T Consensus 294 ~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 294 RPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp SGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 0 123468999999999999999877654
No 258
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=95.51 E-value=0.018 Score=54.35 Aligned_cols=91 Identities=20% Similarity=0.129 Sum_probs=57.5
Q ss_pred ccccccCchHHHHHHHHHHhcccccHHHHHhhccCCCCcceEEEeCCCCCC-----------------------------
Q 045543 71 YEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGK----------------------------- 121 (239)
Q Consensus 71 ~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGGG~G~----------------------------- 121 (239)
|+.+.+|+-+-+.|.+|+... +.+..+.-.+...|+|||||+|.
T Consensus 379 Ye~fekD~vRy~~Y~~AI~~a-------l~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyA 451 (745)
T 3ua3_A 379 YNTFEQDQIKYDVYGEAVVGA-------LKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYI 451 (745)
T ss_dssp HHHHHHCHHHHHHHHHHHHHH-------HHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEE
T ss_pred HHHHcCChhhHHHHHHHHHHH-------HHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEE
Confidence 444556777667777777542 22222111245789999999998
Q ss_pred -------------------------Ccccccc-cc------CC-cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEE
Q 045543 122 -------------------------CGWKMFQ-KI------LN-GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKII 168 (239)
Q Consensus 122 -------------------------~~gD~~~-~~------p~-~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~ll 168 (239)
+.||+.+ .. |+ .|+++.-..=.....|-....|..+.+-|+|||.++
T Consensus 452 VEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 452 VEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp EECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred EeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 4566655 45 44 498876655322244545677888889999999643
No 259
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=95.24 E-value=0.0086 Score=51.55 Aligned_cols=62 Identities=13% Similarity=0.182 Sum_probs=43.0
Q ss_pred CCcceEEEeCCCCCC---------------------------------------CccccccccCCcceeeechhhhcCCh
Q 045543 107 EKIKQLVDVGGGCGK---------------------------------------CGWKMFQKILNGDAILMKLILRNWDD 147 (239)
Q Consensus 107 ~~~~~vlDvGGG~G~---------------------------------------~~gD~~~~~p~~D~~~l~~vlH~~~d 147 (239)
.+..+|||+|||+|. +.+|.++.....|+|++. .+
T Consensus 194 ~~~~~VLDlg~G~G~~~l~a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~d-----pP- 267 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIACKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMN-----LP- 267 (336)
T ss_dssp CTTCEEEETTCTTSHHHHHTTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEEC-----CT-
T ss_pred CCCCEEEEccCccCHHHHhccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEEC-----Cc-
Confidence 456899999999996 234544422123888763 11
Q ss_pred hHHHHHHHHHHhhCCCCceEEEEeeec
Q 045543 148 EHCLSLLKNCYEAIPGNGKIIIIDSTT 174 (239)
Q Consensus 148 ~~~~~iL~~~~~aL~pgg~lli~d~~~ 174 (239)
.....+++.+.+.|+|||.+++++...
T Consensus 268 ~~~~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 268 KFAHKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp TTGGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred HhHHHHHHHHHHHcCCCCEEEEEEeec
Confidence 223488999999999999999887653
No 260
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=95.15 E-value=0.16 Score=43.25 Aligned_cols=84 Identities=10% Similarity=0.006 Sum_probs=53.1
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhcc--------CCccc-c
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQL--------SGEKE-R 204 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~--------~~g~~-r 204 (239)
=++++-.+||.+++++...+|+.+.+.+.||+.| +.|.+.++.... ......... ..+... ..-.. +
T Consensus 181 t~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l-~~d~~~~~~~~~--~~~~~~~~~-~~~~~~g~~~~~~l~~~~~~~ 256 (310)
T 2uyo_A 181 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRI-AVETSPLHGDEW--REQMQLRFR-RVSDALGFEQAVDVQELIYHD 256 (310)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEE-EEECCCTTCSHH--HHHHHHHHH-HHHC-----------CCTTCC
T ss_pred EEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEE-EEEecCCCCcch--hHHHHHHHH-HHHHHcCCcCCCCccccccCC
Confidence 4788899999999999999999999999999866 456655443100 000000000 001000 01122 2
Q ss_pred C-hhhccHHHHHhhCCCcee
Q 045543 205 T-KQEYYGMALTAKNGFKGV 223 (239)
Q Consensus 205 t-~~e~~~~~ll~~aGf~~~ 223 (239)
+ .++. .++|.+.||+.+
T Consensus 257 ~~~~~~--~~~f~~~G~~~~ 274 (310)
T 2uyo_A 257 ENRAVV--ADWLNRHGWRAT 274 (310)
T ss_dssp TTCCCH--HHHHTTTTEEEE
T ss_pred CChHHH--HHHHHHCcCccc
Confidence 5 6788 999999999988
No 261
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=95.09 E-value=0.017 Score=48.47 Aligned_cols=72 Identities=18% Similarity=0.272 Sum_probs=46.7
Q ss_pred HHHHHhhccCCCCcceEEEeCCCCCC------------------Ccc-----------------------ccccccCC--
Q 045543 96 MNRILDYYKGFEKIKQLVDVGGGCGK------------------CGW-----------------------KMFQKILN-- 132 (239)
Q Consensus 96 ~~~~~~~~~~~~~~~~vlDvGGG~G~------------------~~g-----------------------D~~~~~p~-- 132 (239)
..++.+.+- +....+|||+|||+|. +.. |++ .++.
T Consensus 79 L~ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~-~l~~~~ 156 (282)
T 3gcz_A 79 LRWMEERGY-VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVF-NMEVIP 156 (282)
T ss_dssp HHHHHHTTS-CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGG-GSCCCC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchh-hcCCCC
Confidence 345666664 7888899999999999 111 111 1222
Q ss_pred cceeeechhhh----cCChhHHHHHHHHHHhhCCCC--ceEEE
Q 045543 133 GDAILMKLILR----NWDDEHCLSLLKNCYEAIPGN--GKIII 169 (239)
Q Consensus 133 ~D~~~l~~vlH----~~~d~~~~~iL~~~~~aL~pg--g~lli 169 (239)
.|+|+.-..-+ ..+......+|+-+.+.|+|| |.+++
T Consensus 157 ~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~ 199 (282)
T 3gcz_A 157 GDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCI 199 (282)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred cCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEE
Confidence 38887765554 122223346788888999999 98777
No 262
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=95.04 E-value=0.014 Score=47.79 Aligned_cols=57 Identities=14% Similarity=0.130 Sum_probs=45.2
Q ss_pred ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C--CCCCCeEecChhhHHHH
Q 045543 2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A--GDDRRLQRLAPVAKYVL 64 (239)
Q Consensus 2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~--~~~~~~y~~t~~s~~l~ 64 (239)
.|.+.|.+.+ +++|+.|||+++|+ +...+.|+|+.|... . ..+.++|.+++....|-
T Consensus 10 ~iL~~l~~~~--~~~s~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~~~~~~Y~lg~~~~~lg 70 (241)
T 2xrn_A 10 SIMRALGSHP--HGLSLAAIAQLVGL----PRSTVQRIINALEEEFLVEALGPAGGFRLGPALGQLI 70 (241)
T ss_dssp HHHHHHHTCT--TCEEHHHHHHHTTS----CHHHHHHHHHHHHTTTSEEECGGGCEEEECSHHHHHH
T ss_pred HHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeCCCCeEEECHHHHHHH
Confidence 4667777643 58999999999999 999999999999997 2 23348899988765553
No 263
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=94.95 E-value=0.013 Score=52.33 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=18.5
Q ss_pred HHHHHHHHhhCCCCceEEEEe
Q 045543 151 LSLLKNCYEAIPGNGKIIIID 171 (239)
Q Consensus 151 ~~iL~~~~~aL~pgg~lli~d 171 (239)
..+++++.+.|+|||++.++-
T Consensus 287 ~~fl~~~~~~Lk~gG~~a~V~ 307 (445)
T 2okc_A 287 LNFLQHMMLMLKTGGRAAVVL 307 (445)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHhccCCEEEEEE
Confidence 478999999999999998864
No 264
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=94.90 E-value=0.02 Score=38.67 Aligned_cols=53 Identities=11% Similarity=0.132 Sum_probs=41.7
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChh-hHHHHHHHhccC-----CCCCCCeEecChhhHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAV-MLDRVLRRSLSS-----AGDDRRLQRLAPVAKY 62 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~-~l~rlL~~L~~~-----~~~~~~~y~~t~~s~~ 62 (239)
|.+.|... +|.|+.+||+.+|+ .+. .+.+.|..|... .....-.|.+|+.++.
T Consensus 16 IL~~Lk~~---g~~ta~eiA~~Lgi----t~~~aVr~hL~~Le~eGlV~~~~~gRP~w~LT~~g~~ 74 (79)
T 1xmk_A 16 ICDYLFNV---SDSSALNLAKNIGL----TKARDINAVLIDMERQGDVYRQGTTPPIWHLTDKKRE 74 (79)
T ss_dssp HHHHHHHT---CCEEHHHHHHHHCG----GGHHHHHHHHHHHHHTTSEEEECSSSCEEEECHHHHT
T ss_pred HHHHHHHc---CCcCHHHHHHHcCC----CcHHHHHHHHHHHHHCCCEEecCCCCCCeEeCHhHHh
Confidence 45667775 69999999999999 898 999999999886 1122238999988753
No 265
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=94.88 E-value=0.0079 Score=49.93 Aligned_cols=56 Identities=9% Similarity=0.141 Sum_probs=44.6
Q ss_pred ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C--CCCCCeEecChhhHHH
Q 045543 2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A--GDDRRLQRLAPVAKYV 63 (239)
Q Consensus 2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~--~~~~~~y~~t~~s~~l 63 (239)
.|.+.|++.+ +++|+.|||+++|+ +...+.|+|+.|+.. . ..+.++|.+++....|
T Consensus 10 ~IL~~l~~~~--~~lsl~eia~~lgl----~ksT~~RlL~tL~~~G~v~~~~~~~~Y~lG~~~~~l 69 (260)
T 3r4k_A 10 TLLTYFNHGR--LEIGLSDLTRLSGM----NKATVYRLMSELQEAGFVEQVEGARSYRLGPQVLRL 69 (260)
T ss_dssp HHHTTCBTTB--SEEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEECSSSSEEEECTTHHHH
T ss_pred HHHHHHhhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcCCCCcEEcCHHHHHH
Confidence 4566776532 68999999999999 999999999999998 2 2334899998876554
No 266
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=94.68 E-value=0.035 Score=48.94 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=20.0
Q ss_pred HHHHHhhccCCCCcceEEEeCCCCCC
Q 045543 96 MNRILDYYKGFEKIKQLVDVGGGCGK 121 (239)
Q Consensus 96 ~~~~~~~~~~~~~~~~vlDvGGG~G~ 121 (239)
+..++.... |.+...|+|.+||+|.
T Consensus 190 Aa~ll~l~~-~~~~~~vlDp~CGSGt 214 (393)
T 3k0b_A 190 AAALVLLTS-WHPDRPFYDPVCGSGT 214 (393)
T ss_dssp HHHHHHHSC-CCTTSCEEETTCTTSH
T ss_pred HHHHHHHhC-CCCCCeEEEcCCCCCH
Confidence 445555556 8888999999999997
No 267
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=94.68 E-value=0.014 Score=51.19 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhCCCCceEEEEe
Q 045543 149 HCLSLLKNCYEAIPGNGKIIIID 171 (239)
Q Consensus 149 ~~~~iL~~~~~aL~pgg~lli~d 171 (239)
....+++.+.+.|+|||.|++..
T Consensus 309 ~~~~ll~~~~~~L~pgG~l~~~~ 331 (385)
T 2b78_A 309 DYHKLIRQGLEILSENGLIIAST 331 (385)
T ss_dssp HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEe
Confidence 34578999999999999988764
No 268
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=94.62 E-value=0.0098 Score=56.43 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHhhCCCCceEEEEe
Q 045543 148 EHCLSLLKNCYEAIPGNGKIIIID 171 (239)
Q Consensus 148 ~~~~~iL~~~~~aL~pgg~lli~d 171 (239)
..-..+++++.+.|+|||+|++.-
T Consensus 634 ~~~~~ll~~a~~~LkpgG~L~~s~ 657 (703)
T 3v97_A 634 RDHLALMKDLKRLLRAGGTIMFSN 657 (703)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 456789999999999999998643
No 269
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=94.62 E-value=0.028 Score=46.22 Aligned_cols=56 Identities=7% Similarity=-0.022 Sum_probs=44.6
Q ss_pred ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CC-CCCCeEecChhhHHH
Q 045543 2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AG-DDRRLQRLAPVAKYV 63 (239)
Q Consensus 2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~-~~~~~y~~t~~s~~l 63 (239)
.|.+.|.+.+ +++|+.|||+++|+ +...+.|+|+.|... .+ ...++|.+++....+
T Consensus 12 ~iL~~l~~~~--~~~~~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~~~~~Y~lg~~~~~l 70 (249)
T 1mkm_A 12 EILDFIVKNP--GDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLRKKDKRYVPGYKLIEY 70 (249)
T ss_dssp HHHHHHHHCS--SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECTTSCEEECTHHHHH
T ss_pred HHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEECCCCcEEECHHHHHH
Confidence 4667777643 58999999999999 999999999999987 22 246889998875444
No 270
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=94.58 E-value=0.013 Score=48.48 Aligned_cols=56 Identities=13% Similarity=0.060 Sum_probs=44.3
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CCCCCCeEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AGDDRRLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~~~~~~y~~t~~s~~l~ 64 (239)
|.+.|.+.+ +++|+.|||+++|+ +...+.|+|+.|... .+.++++|.+++....|-
T Consensus 19 iL~~l~~~~--~~~~~~eia~~~gl----~~stv~r~l~~L~~~G~v~~~~~~Y~Lg~~~~~l~ 76 (257)
T 2g7u_A 19 VLLAFDAQR--PNPTLAELATEAGL----SRPAVRRILLTLQKLGYVAGSGGRWSLTPRVLSIG 76 (257)
T ss_dssp HHHTCSSSC--SSCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEETTEEEECGGGHHHH
T ss_pred HHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCCCEEEEcHHHHHHH
Confidence 455665432 68999999999999 999999999999987 333468999998765553
No 271
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=94.56 E-value=0.094 Score=46.02 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=20.1
Q ss_pred HHHHHhhccCCCCcceEEEeCCCCCC
Q 045543 96 MNRILDYYKGFEKIKQLVDVGGGCGK 121 (239)
Q Consensus 96 ~~~~~~~~~~~~~~~~vlDvGGG~G~ 121 (239)
+..++.... |.+...++|.+||+|.
T Consensus 183 Aaall~l~~-~~~~~~llDp~CGSGt 207 (384)
T 3ldg_A 183 AAAIILLSN-WFPDKPFVDPTCGSGT 207 (384)
T ss_dssp HHHHHHHTT-CCTTSCEEETTCTTSH
T ss_pred HHHHHHHhC-CCCCCeEEEeCCcCCH
Confidence 445555555 8888999999999998
No 272
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=94.54 E-value=0.029 Score=41.13 Aligned_cols=53 Identities=11% Similarity=-0.027 Sum_probs=38.7
Q ss_pred chHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC----CCC-CCCeEecChhh
Q 045543 4 FEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS----AGD-DRRLQRLAPVA 60 (239)
Q Consensus 4 fd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~----~~~-~~~~y~~t~~s 60 (239)
...|+.+..+++.|.+|||+++++ ++..+.++|+.|... ... ..|.|.++.-.
T Consensus 15 L~~la~~~~~~~~s~~ela~~~~i----~~~~v~~il~~L~~~Glv~~~~g~~ggy~L~~~~ 72 (129)
T 2y75_A 15 MIELAKKHGEGPTSLKSIAQTNNL----SEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGSEP 72 (129)
T ss_dssp HHHHHHTTTSCCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEC----CCEEESSCG
T ss_pred HHHHHhCCCCCcCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEecCCCCCceEeCCCH
Confidence 345555322378999999999999 999999999999987 122 24778887543
No 273
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=94.22 E-value=0.08 Score=47.07 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=17.3
Q ss_pred HHHhhccCCCCcceEEEeCCCCCC
Q 045543 98 RILDYYKGFEKIKQLVDVGGGCGK 121 (239)
Q Consensus 98 ~~~~~~~~~~~~~~vlDvGGG~G~ 121 (239)
.+++.++ ..+..+|+|+|||+|.
T Consensus 277 ~~~~~l~-~~~~~~VLDlgcG~G~ 299 (433)
T 1uwv_A 277 RALEWLD-VQPEDRVLDLFCGMGN 299 (433)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTTT
T ss_pred HHHHhhc-CCCCCEEEECCCCCCH
Confidence 3444444 5666899999999999
No 274
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=94.18 E-value=0.029 Score=38.88 Aligned_cols=49 Identities=14% Similarity=0.109 Sum_probs=40.1
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---CCCCCCeEecChhhH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---AGDDRRLQRLAPVAK 61 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~~~~~~~y~~t~~s~ 61 (239)
|++.| + ++.|+.|||+.+|+ ++..+.+.|+.|... .... +.|.+++.++
T Consensus 36 Il~~L-~----~~~~~~eLa~~l~i----s~~tv~~~L~~L~~~Glv~~~~-g~y~l~~~g~ 87 (96)
T 1y0u_A 36 ILRML-D----KGRSEEEIMQTLSL----SKKQLDYHLKVLEAGFCIERVG-ERWVVTDAGK 87 (96)
T ss_dssp HHHHH-H----TTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEET-TEEEECTTTC
T ss_pred HHHHH-c----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEC-CEEEECCCch
Confidence 56677 5 68999999999999 999999999999887 2222 6899988653
No 275
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=94.14 E-value=0.027 Score=49.49 Aligned_cols=24 Identities=4% Similarity=0.073 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHhhCCCCceEEEEe
Q 045543 148 EHCLSLLKNCYEAIPGNGKIIIID 171 (239)
Q Consensus 148 ~~~~~iL~~~~~aL~pgg~lli~d 171 (239)
+....++.++.+.|+|||.+++..
T Consensus 316 ~~~~~~l~~~~~~LkpgG~l~~~~ 339 (396)
T 3c0k_A 316 RGYKDINMLAIQLLNEGGILLTFS 339 (396)
T ss_dssp THHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEe
Confidence 456789999999999999988864
No 276
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=94.07 E-value=0.052 Score=45.93 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=20.4
Q ss_pred HHHHHhhccCCCCcceEEEeCCCCCC
Q 045543 96 MNRILDYYKGFEKIKQLVDVGGGCGK 121 (239)
Q Consensus 96 ~~~~~~~~~~~~~~~~vlDvGGG~G~ 121 (239)
...+++..+ ..+..+|||||||+|.
T Consensus 39 ~~~Iv~~l~-~~~~~~VLEIG~G~G~ 63 (295)
T 3gru_A 39 VNKAVESAN-LTKDDVVLEIGLGKGI 63 (295)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSH
T ss_pred HHHHHHhcC-CCCcCEEEEECCCchH
Confidence 456666666 7777899999999999
No 277
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=94.03 E-value=0.011 Score=49.29 Aligned_cols=53 Identities=11% Similarity=0.130 Sum_probs=42.1
Q ss_pred ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CCCCCCeEecChhh
Q 045543 2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AGDDRRLQRLAPVA 60 (239)
Q Consensus 2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~~~~~~y~~t~~s 60 (239)
.|.+.|.+.+ +++|+.|||+++|+ +...+.|+|+.|... .+.++++|.+++..
T Consensus 25 ~iL~~l~~~~--~~~~~~eia~~~gl----~~stv~r~l~tL~~~G~v~~~~~~Y~Lg~~~ 79 (265)
T 2ia2_A 25 AVIRCFDHRN--QRRTLSDVARATDL----TRATARRFLLTLVELGYVATDGSAFWLTPRV 79 (265)
T ss_dssp HHHHTCCSSC--SSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEESSSEEEECGGG
T ss_pred HHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecCCEEEEcHHH
Confidence 3556665432 68999999999999 999999999999986 33346899998765
No 278
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=93.74 E-value=0.069 Score=46.82 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=19.6
Q ss_pred HHHHHhhccCCCCcceEEEeCCCCCC
Q 045543 96 MNRILDYYKGFEKIKQLVDVGGGCGK 121 (239)
Q Consensus 96 ~~~~~~~~~~~~~~~~vlDvGGG~G~ 121 (239)
+..++.... |.+..+|+|.+||+|.
T Consensus 184 Aa~ll~~~~-~~~~~~vlDp~CGSGt 208 (385)
T 3ldu_A 184 AAGLIYLTP-WKAGRVLVDPMCGSGT 208 (385)
T ss_dssp HHHHHHTSC-CCTTSCEEETTCTTCH
T ss_pred HHHHHHhhC-CCCCCeEEEcCCCCCH
Confidence 344555555 8888999999999997
No 279
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=93.66 E-value=0.082 Score=44.14 Aligned_cols=59 Identities=17% Similarity=0.146 Sum_probs=39.2
Q ss_pred HHHHHhhccCCCCcceEEEeCCCCCC------------------------------------Ccccccc-ccCC--ccee
Q 045543 96 MNRILDYYKGFEKIKQLVDVGGGCGK------------------------------------CGWKMFQ-KILN--GDAI 136 (239)
Q Consensus 96 ~~~~~~~~~~~~~~~~vlDvGGG~G~------------------------------------~~gD~~~-~~p~--~D~~ 136 (239)
...+++..+ ..+. +|||||||+|. +.+|+++ +++. ....
T Consensus 36 ~~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~~ 113 (271)
T 3fut_A 36 LRRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGSL 113 (271)
T ss_dssp HHHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTEE
T ss_pred HHHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCccE
Confidence 345666666 6666 99999999999 5567766 4543 2345
Q ss_pred eechhhhcCChhHHHHHHHH
Q 045543 137 LMKLILRNWDDEHCLSLLKN 156 (239)
Q Consensus 137 ~l~~vlH~~~d~~~~~iL~~ 156 (239)
+++|.-.+.+.+-..++|..
T Consensus 114 iv~NlPy~iss~il~~ll~~ 133 (271)
T 3fut_A 114 LVANLPYHIATPLVTRLLKT 133 (271)
T ss_dssp EEEEECSSCCHHHHHHHHHH
T ss_pred EEecCcccccHHHHHHHhcC
Confidence 66676666666655555554
No 280
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=93.61 E-value=0.054 Score=48.21 Aligned_cols=15 Identities=20% Similarity=0.403 Sum_probs=13.1
Q ss_pred CCcceEEEeCCCCCC
Q 045543 107 EKIKQLVDVGGGCGK 121 (239)
Q Consensus 107 ~~~~~vlDvGGG~G~ 121 (239)
.+..+|||+|||+|.
T Consensus 289 ~~~~~VLDlgcG~G~ 303 (425)
T 2jjq_A 289 VEGEKILDMYSGVGT 303 (425)
T ss_dssp CCSSEEEEETCTTTH
T ss_pred CCCCEEEEeeccchH
Confidence 455799999999999
No 281
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=93.57 E-value=0.032 Score=46.18 Aligned_cols=56 Identities=13% Similarity=0.069 Sum_probs=42.3
Q ss_pred ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C-CCCCCeEecChhhHHH
Q 045543 2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A-GDDRRLQRLAPVAKYV 63 (239)
Q Consensus 2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~-~~~~~~y~~t~~s~~l 63 (239)
.|.+.|.+.+ +++|+.|||+++|+ +...+.|+|+.|... . ....++|.+++....|
T Consensus 27 ~iL~~l~~~~--~~~~~~eia~~~gl----~kstv~r~l~tL~~~G~v~~~~~~~Y~lg~~~~~l 85 (260)
T 2o0y_A 27 DLLELFDAAH--PTRSLKELVEGTKL----PKTTVVRLVATMCARSVLTSRADGSYSLGPEMLRW 85 (260)
T ss_dssp HHHTTCBTTB--SSBCHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHH
T ss_pred HHHHHHhhCC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEECCCCeEEecHHHHHH
Confidence 3556665422 68999999999999 999999999999987 2 2223389998875444
No 282
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=93.45 E-value=0.06 Score=40.44 Aligned_cols=52 Identities=13% Similarity=0.108 Sum_probs=39.4
Q ss_pred HhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC-----CCCCCCeEecChhhH
Q 045543 6 IMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS-----AGDDRRLQRLAPVAK 61 (239)
Q Consensus 6 ~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~-----~~~~~~~y~~t~~s~ 61 (239)
.|+.++.+++.|.+|||+++++ ++..++++|..|... ..-..|.|.++.-..
T Consensus 19 ~La~~~~~~~~s~~~IA~~~~i----~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~ 75 (143)
T 3t8r_A 19 SLAKKEGQGCISLKSIAEENNL----SDLYLEQLVGPLRNAGLIRSVRGAKGGYQLRVPAE 75 (143)
T ss_dssp HHHTTTTSCCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECSSSSSEEEESSCGG
T ss_pred HHHhCCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCEEEecCCCCCCeeecCCcc
Confidence 4554332368999999999999 999999999999886 223357798875543
No 283
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=92.96 E-value=0.11 Score=39.84 Aligned_cols=51 Identities=12% Similarity=-0.005 Sum_probs=38.9
Q ss_pred HhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC-----CCCCCCeEecChhh
Q 045543 6 IMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS-----AGDDRRLQRLAPVA 60 (239)
Q Consensus 6 ~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~-----~~~~~~~y~~t~~s 60 (239)
.|+....+++.|.++||+++++ ++..++++|..|... ..-.+|.|.++.-.
T Consensus 35 ~LA~~~~~~~~s~~eIA~~~~i----~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p 90 (159)
T 3lwf_A 35 ELAKRIGDGPISLRSIAQDKNL----SEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDP 90 (159)
T ss_dssp HHHHTTTSCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECSTTCEEEECSCT
T ss_pred HHHhcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCeEEEecCCCCceEecCCH
Confidence 3454333468999999999999 999999999999886 22335778887554
No 284
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=92.65 E-value=0.12 Score=34.78 Aligned_cols=37 Identities=22% Similarity=0.360 Sum_probs=33.2
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
|.+.|.+. +.+|++|||+.+++ ++..++|-|+.|...
T Consensus 7 Il~~L~~~---g~vsv~eLa~~l~V----S~~TIRrdL~~Le~~ 43 (78)
T 1xn7_A 7 VRDLLALR---GRMEAAQISQTLNT----PQPMINAMLQQLESM 43 (78)
T ss_dssp HHHHHHHS---CSBCHHHHHHHTTC----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHc---CCCcHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence 56777775 69999999999999 999999999999886
No 285
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=92.52 E-value=0.32 Score=41.01 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=24.4
Q ss_pred ceeeechhhh----cCChhHHHHHHHHHHhhCCCC-ceEEEE
Q 045543 134 DAILMKLILR----NWDDEHCLSLLKNCYEAIPGN-GKIIII 170 (239)
Q Consensus 134 D~~~l~~vlH----~~~d~~~~~iL~~~~~aL~pg-g~lli~ 170 (239)
|+++.-..-+ ..+......+|+-+.+.|+|| |.+++-
T Consensus 149 DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K 190 (300)
T 3eld_A 149 DTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVK 190 (300)
T ss_dssp SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred CEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 7777644433 112223356788889999999 988874
No 286
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=92.13 E-value=0.11 Score=36.17 Aligned_cols=49 Identities=18% Similarity=0.184 Sum_probs=37.9
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC------CCCCCCeEecChh
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS------AGDDRRLQRLAPV 59 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~------~~~~~~~y~~t~~ 59 (239)
|...|.+ ++.|+.|||+.+|+ ++..+.+.|+.|... .....-.|++|+.
T Consensus 28 Il~~L~~----~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~ 82 (102)
T 3pqk_A 28 LVCTLVE----GEFSVGELEQQIGI----GQPTLSQQLGVLRESGIVETRRNIKQIFYRLTEA 82 (102)
T ss_dssp HHHHHHT----CCBCHHHHHHHHTC----CTTHHHHHHHHHHHTTSEEEECSSSCCEEEECSS
T ss_pred HHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECcH
Confidence 5566765 68999999999999 999999999999876 1122345777764
No 287
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=92.06 E-value=0.32 Score=40.28 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=19.9
Q ss_pred HHHHHhhccCCCCcceEEEeCCCCCC
Q 045543 96 MNRILDYYKGFEKIKQLVDVGGGCGK 121 (239)
Q Consensus 96 ~~~~~~~~~~~~~~~~vlDvGGG~G~ 121 (239)
..++-+.+ -+.+..+|||+||++|.
T Consensus 62 L~EIdeK~-likpg~~VVDLGaAPGG 86 (269)
T 2px2_A 62 LRWLVERR-FVQPIGKVVDLGCGRGG 86 (269)
T ss_dssp HHHHHHTT-SCCCCEEEEEETCTTSH
T ss_pred HHHHHHcC-CCCCCCEEEEcCCCCCH
Confidence 34556665 37888999999999998
No 288
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=92.05 E-value=0.12 Score=36.55 Aligned_cols=52 Identities=12% Similarity=0.136 Sum_probs=39.4
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C--CC--CCCeEecChhhHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A--GD--DRRLQRLAPVAKY 62 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~--~~--~~~~y~~t~~s~~ 62 (239)
|...|.+ ++.|+.|||+.+|+ ++..+.+.|+.|... . .. ....|.+|+....
T Consensus 26 IL~~L~~----~~~~~~ela~~l~i----s~~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~~ 83 (114)
T 2oqg_A 26 ILTELGR----ADQSASSLATRLPV----SRQAIAKHLNALQACGLVESVKVGREIRYRALGAELN 83 (114)
T ss_dssp HHHHHHH----SCBCHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHH
T ss_pred HHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeEEecCCEEEEEechHHHH
Confidence 5566744 68999999999999 999999999999876 1 11 1223888877643
No 289
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=91.91 E-value=0.12 Score=35.45 Aligned_cols=37 Identities=19% Similarity=0.392 Sum_probs=33.4
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
|.+.|.+. +.+|++|||+.+++ ++..++|.|+.|...
T Consensus 7 Il~~L~~~---g~vsv~eLA~~l~V----S~~TIRrDL~~Le~~ 43 (87)
T 2k02_A 7 VRDMLALQ---GRMEAKQLSARLQT----PQPLIDAMLERMEAM 43 (87)
T ss_dssp HHHHHHHS---CSEEHHHHHHHTTC----CHHHHHHHHHHHHTT
T ss_pred HHHHHHHc---CCCcHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence 56777775 69999999999999 999999999999987
No 290
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=91.70 E-value=0.17 Score=41.80 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=20.7
Q ss_pred HHHHHhhccCCCCcceEEEeCCCCCC
Q 045543 96 MNRILDYYKGFEKIKQLVDVGGGCGK 121 (239)
Q Consensus 96 ~~~~~~~~~~~~~~~~vlDvGGG~G~ 121 (239)
...+++..+ ..+..+|||||||+|.
T Consensus 18 ~~~iv~~~~-~~~~~~VLEIG~G~G~ 42 (255)
T 3tqs_A 18 LQKIVSAIH-PQKTDTLVEIGPGRGA 42 (255)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTTT
T ss_pred HHHHHHhcC-CCCcCEEEEEcccccH
Confidence 456677776 7778899999999999
No 291
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=91.57 E-value=0.15 Score=35.43 Aligned_cols=45 Identities=9% Similarity=0.052 Sum_probs=40.1
Q ss_pred CCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CCCCCCeEecChhhHHHH
Q 045543 16 LSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AGDDRRLQRLAPVAKYVL 64 (239)
Q Consensus 16 ~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~~~~~~y~~t~~s~~l~ 64 (239)
++..+||..+|+ +++.+.+.++.|... .+...+.|.+|+-++.++
T Consensus 21 ~~~t~La~~~~l----s~~~~~~~l~~L~~~GLI~~~~~~~~LT~kG~~~l 67 (95)
T 1r7j_A 21 SPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQEGKQYMLTKKGEELL 67 (95)
T ss_dssp BCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEETTEEEECHHHHHHH
T ss_pred CCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEECCeeEEChhHHHHH
Confidence 899999999999 999999999999998 444467799999998776
No 292
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=91.48 E-value=0.19 Score=37.00 Aligned_cols=47 Identities=9% Similarity=0.052 Sum_probs=39.9
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C-CCCCCeEecChhhHHHH
Q 045543 14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A-GDDRRLQRLAPVAKYVL 64 (239)
Q Consensus 14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~-~~~~~~y~~t~~s~~l~ 64 (239)
++.|..+||+.+++ ++..+.++++.|... . ....+.|.+|+.++.+.
T Consensus 21 ~~~~~~ela~~l~v----s~~tvs~~l~~Le~~Glv~r~~~~~~~LT~~g~~~~ 70 (142)
T 1on2_A 21 GYARVSDIAEALAV----HPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIG 70 (142)
T ss_dssp SSCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHH
T ss_pred CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEeeCceEEEchhHHHHH
Confidence 68999999999999 999999999999987 2 22347899999987665
No 293
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=91.44 E-value=0.1 Score=34.77 Aligned_cols=38 Identities=18% Similarity=0.367 Sum_probs=34.1
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
|+++|.++| .|+++.|||+++|+ +..-+.+.|..|-..
T Consensus 24 VLe~LkeaG--~PlkageIae~~Gv----dKKeVdKaik~LKkE 61 (80)
T 2lnb_A 24 ILQVLTEAG--SPVKLAQLVKECQA----PKRELNQVLYRMKKE 61 (80)
T ss_dssp HHHHHHHHT--SCEEHHHHHHHHTS----CHHHHHHHHHHHHHT
T ss_pred HHHHHHHcC--CCCCHHHHHHHHCC----CHHHHHHHHHHHHHc
Confidence 678888877 89999999999999 999999999998765
No 294
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=91.42 E-value=0.11 Score=35.71 Aligned_cols=54 Identities=11% Similarity=0.088 Sum_probs=41.0
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---C------CCCCCeEecChhhHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---A------GDDRRLQRLAPVAKYV 63 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~------~~~~~~y~~t~~s~~l 63 (239)
|+..|... ++.|..|||+.+++ ++..+.+.|+.|... . ......|.+|+.+...
T Consensus 21 iL~~L~~~---~~~~~~ela~~l~i----s~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~ 83 (100)
T 1ub9_A 21 IMIFLLPR---RKAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEE 83 (100)
T ss_dssp HHHHHHHH---SEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHH
T ss_pred HHHHHHhc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHH
Confidence 55666543 58999999999999 999999999999876 1 1122358889887543
No 295
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=91.39 E-value=0.099 Score=35.03 Aligned_cols=29 Identities=10% Similarity=0.040 Sum_probs=27.5
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
+|.|+.|||+.+|+ ++..+++-|..|...
T Consensus 23 ~~psv~EIa~~lgv----S~~TVrr~L~~Le~k 51 (77)
T 2jt1_A 23 APVKTRDIADAAGL----SIYQVRLYLEQLHDV 51 (77)
T ss_dssp SCEEHHHHHHHHTC----CHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHC
Confidence 79999999999999 999999999999886
No 296
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=91.29 E-value=0.2 Score=41.12 Aligned_cols=63 Identities=8% Similarity=0.094 Sum_probs=45.9
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC----CCCCCCeEecChhhHHHHhc--CCCccc
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS----AGDDRRLQRLAPVAKYVLHY--GIGDYE 72 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~----~~~~~~~y~~t~~s~~l~~~--g~~~~~ 72 (239)
|...|.+. +++|..|||+++|+ ++..+.|.|+.|... .......|.+|+.++.+... ..+.|+
T Consensus 157 IL~~L~~~---~~~s~~eLA~~lgl----sksTv~r~L~~Le~~GlV~r~~r~~~~~LT~~G~~l~~~~~~~~~w~ 225 (244)
T 2wte_A 157 LLNVLYET---KGTGITELAKMLDK----SEKTLINKIAELKKFGILTQKGKDRKVELNELGLNVIKLNKSVIESS 225 (244)
T ss_dssp HHHHHHHH---TCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEETTTTEEEECHHHHHHHHHTC------
T ss_pred HHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeCCccEEEECHHHHHHHHHHhcccccH
Confidence 44566554 58999999999999 999999999999987 22346789999999887632 345554
No 297
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=91.17 E-value=0.096 Score=36.18 Aligned_cols=50 Identities=14% Similarity=0.148 Sum_probs=38.1
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCCCCeEecChhh
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDDRRLQRLAPVA 60 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~~~~y~~t~~s 60 (239)
|...|.+ ++.|+.|||+.+|+ ++..+.+.|+.|... . ......|.+++..
T Consensus 28 Il~~L~~----~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~ 83 (98)
T 3jth_A 28 ILCMLHN----QELSVGELCAKLQL----SQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEE 83 (98)
T ss_dssp HHHHTTT----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCHH
T ss_pred HHHHHhc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHHH
Confidence 4566665 69999999999999 999999999999876 1 1223457777654
No 298
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=91.15 E-value=0.27 Score=34.91 Aligned_cols=54 Identities=13% Similarity=0.088 Sum_probs=41.9
Q ss_pred cchHhHhcCCCCCCCHHHHHHhC-CCCCCCChhhHHHHHHHhccC--C----C---CCCCeEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQM-PSHNPNAAVMLDRVLRRSLSS--A----G---DDRRLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~-g~~~~~~~~~l~rlL~~L~~~--~----~---~~~~~y~~t~~s~~l~ 64 (239)
|...|.+ ++.|..|||+.+ ++ ++..+.+.|+.|... . . ...-.|.+|+.++.+.
T Consensus 27 IL~~L~~----~~~~~~eLa~~l~~i----s~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~~ 90 (112)
T 1z7u_A 27 LMDELFQ----GTKRNGELMRALDGI----TQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALY 90 (112)
T ss_dssp HHHHHHH----SCBCHHHHHHHSTTC----CHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHH
T ss_pred HHHHHHh----CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHHH
Confidence 3445665 689999999999 99 999999999999886 1 1 1223489999987765
No 299
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=91.00 E-value=0.32 Score=34.58 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=39.3
Q ss_pred CCCC--HHHHHHhC-CCCCCCChhhHHHHHHHhccC--CCC---CCCeEecChhhHHHH
Q 045543 14 AKLS--AAEIEAQM-PSHNPNAAVMLDRVLRRSLSS--AGD---DRRLQRLAPVAKYVL 64 (239)
Q Consensus 14 ~~~t--~~eLA~~~-g~~~~~~~~~l~rlL~~L~~~--~~~---~~~~y~~t~~s~~l~ 64 (239)
++.+ ..||++.+ |+ ++..+.+.|+.|... .+. ..-.|.+|+.++.+.
T Consensus 39 g~~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~r~~~y~LT~~G~~l~ 93 (111)
T 3df8_A 39 GSTRQNFNDIRSSIPGI----SSTILSRRIKDLIDSGLVERRSGQITTYALTEKGMNVR 93 (111)
T ss_dssp SSSCBCHHHHHHTSTTC----CHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHHHHHH
T ss_pred CCCCCCHHHHHHHccCC----CHHHHHHHHHHHHHCCCEEEeecCcEEEEECccHHHHH
Confidence 6877 99999999 99 999999999999987 211 356799999998765
No 300
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=90.91 E-value=0.098 Score=45.54 Aligned_cols=15 Identities=33% Similarity=0.461 Sum_probs=13.3
Q ss_pred CCcceEEEeCCCCCC
Q 045543 107 EKIKQLVDVGGGCGK 121 (239)
Q Consensus 107 ~~~~~vlDvGGG~G~ 121 (239)
++.++|||||||.|.
T Consensus 187 p~pkrVL~IGgG~G~ 201 (364)
T 2qfm_A 187 YTGKDVLILGGGDGG 201 (364)
T ss_dssp CTTCEEEEEECTTCH
T ss_pred CCCCEEEEEECChhH
Confidence 356899999999998
No 301
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=90.87 E-value=0.2 Score=33.39 Aligned_cols=37 Identities=14% Similarity=0.098 Sum_probs=32.4
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
|.+.|.+. ++.|..|||+.+|+ ++..+.+.|+.|...
T Consensus 5 Il~~L~~~---~~~s~~eLa~~lgv----s~~tv~r~L~~L~~~ 41 (81)
T 2htj_A 5 ILEFLNRH---NGGKTAEIAEALAV----TDYQARYYLLLLEKA 41 (81)
T ss_dssp HHHHHHHS---CCCCHHHHHHHHTS----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence 56677764 58999999999999 999999999999885
No 302
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=90.67 E-value=0.22 Score=35.06 Aligned_cols=47 Identities=17% Similarity=0.123 Sum_probs=37.6
Q ss_pred CCCCHHHHHHhC-CCCCCCChhhHHHHHHHhccC--C----C---CCCCeEecChhhHHHH
Q 045543 14 AKLSAAEIEAQM-PSHNPNAAVMLDRVLRRSLSS--A----G---DDRRLQRLAPVAKYVL 64 (239)
Q Consensus 14 ~~~t~~eLA~~~-g~~~~~~~~~l~rlL~~L~~~--~----~---~~~~~y~~t~~s~~l~ 64 (239)
++.+..|||+.+ ++ ++..+.+.|+.|... . . ...-.|.+|+.++.+.
T Consensus 26 ~~~~~~eLa~~l~~i----s~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~ 82 (107)
T 2hzt_A 26 GKKRTSELKRLMPNI----TQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLE 82 (107)
T ss_dssp CCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHHH
Confidence 799999999999 99 999999999999987 1 1 1123589998876543
No 303
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=90.57 E-value=0.25 Score=41.87 Aligned_cols=22 Identities=9% Similarity=-0.019 Sum_probs=17.1
Q ss_pred HHhhccCCCCcceEEEeCCCCCC
Q 045543 99 ILDYYKGFEKIKQLVDVGGGCGK 121 (239)
Q Consensus 99 ~~~~~~~~~~~~~vlDvGGG~G~ 121 (239)
++..++ ..+..+|||+|||+|.
T Consensus 94 ~~~~l~-~~~g~~VLDlcaG~G~ 115 (309)
T 2b9e_A 94 PAMLLD-PPPGSHVIDACAAPGN 115 (309)
T ss_dssp HHHHHC-CCTTCEEEESSCTTCH
T ss_pred HHHHhC-CCCCCEEEEeCCChhH
Confidence 334455 6677899999999998
No 304
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=90.50 E-value=0.12 Score=43.59 Aligned_cols=20 Identities=10% Similarity=0.326 Sum_probs=17.5
Q ss_pred HHHHHHHHhhCCCCceEEEE
Q 045543 151 LSLLKNCYEAIPGNGKIIII 170 (239)
Q Consensus 151 ~~iL~~~~~aL~pgg~lli~ 170 (239)
...++.|+++|+|||.++..
T Consensus 178 ~eFy~~~~~~L~p~Gv~v~q 197 (294)
T 3o4f_A 178 SAFYEGCKRCLNPGGIFVAQ 197 (294)
T ss_dssp CHHHHHHHHTEEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEe
Confidence 46799999999999988875
No 305
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=90.17 E-value=0.16 Score=38.28 Aligned_cols=43 Identities=5% Similarity=0.034 Sum_probs=34.7
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC----CCCCCCeEecChhh
Q 045543 14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS----AGDDRRLQRLAPVA 60 (239)
Q Consensus 14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~----~~~~~~~y~~t~~s 60 (239)
++.|++|||+++++ ++..++++|..|... ...+.|.|.++.-.
T Consensus 29 ~~~~~~~iA~~~~i----~~~~l~kil~~L~~~Glv~s~rG~GGy~L~~~p 75 (149)
T 1ylf_A 29 SLCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVNRGPGGAGLLKDL 75 (149)
T ss_dssp GGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC---CCEEESSCG
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEccCCCceEeCCCh
Confidence 68999999999999 999999999999887 22237789887654
No 306
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=90.17 E-value=0.31 Score=33.55 Aligned_cols=55 Identities=9% Similarity=0.155 Sum_probs=43.3
Q ss_pred cchHhHhcCCCCCCCHHHH----HHhCCCCCCCChhhHHHHHHHhccC--C----CCCCCeEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEI----EAQMPSHNPNAAVMLDRVLRRSLSS--A----GDDRRLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eL----A~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~~~~y~~t~~s~~l~ 64 (239)
|+..|.+. ++.|..|| |+.+++ ++..+.++++.|... . ......|.+|+.++.++
T Consensus 13 iL~~l~~~---~~~~~~el~~~la~~l~i----s~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~ 77 (99)
T 1tbx_A 13 VLAYLYDN---EGIATYDLYKKVNAEFPM----STATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFA 77 (99)
T ss_dssp HHHHHTTC---TTCBHHHHHHHHHTTSCC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHc---CCcCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHH
Confidence 45556653 68999999 999999 999999999999986 1 12345688999988765
No 307
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=90.13 E-value=0.25 Score=36.53 Aligned_cols=47 Identities=15% Similarity=0.029 Sum_probs=38.9
Q ss_pred CCCCHHHHHHhC-CCCCCCChhhHHHHHHHhccC--C-------CCCCCeEecChhhHHHH
Q 045543 14 AKLSAAEIEAQM-PSHNPNAAVMLDRVLRRSLSS--A-------GDDRRLQRLAPVAKYVL 64 (239)
Q Consensus 14 ~~~t~~eLA~~~-g~~~~~~~~~l~rlL~~L~~~--~-------~~~~~~y~~t~~s~~l~ 64 (239)
++.+..||++.+ |+ ++..|.+.|+.|... . .+..-.|.+|+.++.|.
T Consensus 38 g~~rf~eL~~~l~gI----s~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~ 94 (131)
T 4a5n_A 38 GKKRFNEFRRICPSI----TQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLE 94 (131)
T ss_dssp SCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred CCcCHHHHHHHhccc----CHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHH
Confidence 799999999999 99 999999999999986 1 11234699999987665
No 308
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=90.05 E-value=0.23 Score=38.09 Aligned_cols=51 Identities=12% Similarity=0.112 Sum_probs=39.3
Q ss_pred HhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC-----CCCCCCeEecChhhH
Q 045543 6 IMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS-----AGDDRRLQRLAPVAK 61 (239)
Q Consensus 6 ~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~-----~~~~~~~y~~t~~s~ 61 (239)
.|+.++ ++++|.++||+++++ ++..+.++|..|... ..-..|.|.+.....
T Consensus 20 ~La~~~-~~~~s~~~IA~~~~i----s~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~ 75 (162)
T 3k69_A 20 YLDAHR-DSKVASRELAQSLHL----NPVMIRNILSVLHKHGYLTGTVGKNGGYQLDLALA 75 (162)
T ss_dssp HHHTTT-TSCBCHHHHHHHHTS----CGGGTHHHHHHHHHTTSSEEECSTTCEEECCSCGG
T ss_pred HHHhCC-CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeecCCCCCeEecCChh
Confidence 455432 378999999999999 999999999999887 223356798875543
No 309
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=90.00 E-value=0.21 Score=33.89 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=35.7
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC-----CCCCCCeEecChh
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS-----AGDDRRLQRLAPV 59 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~-----~~~~~~~y~~t~~ 59 (239)
|.+.|.+ .++|+.|||+++|+ +...+++.|..|... ....+-.|..+..
T Consensus 22 IL~lL~~----~g~sa~eLAk~Lgi----Sk~aVr~~L~~Le~eG~I~~~~~~PP~W~~~~~ 75 (82)
T 1oyi_A 22 AIKTIGI----EGATAAQLTRQLNM----EKREVNKALYDLQRSAMVYSSDDIPPRWFMTTE 75 (82)
T ss_dssp HHHHHSS----STEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEECSSSSCEEESCC-
T ss_pred HHHHHHH----cCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCCCCCCcceeccC
Confidence 4456665 24999999999999 999999999999774 2223445665544
No 310
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=89.90 E-value=0.52 Score=32.86 Aligned_cols=48 Identities=19% Similarity=0.188 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC-------CCCCCCeEecChhhHHHH
Q 045543 13 RAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS-------AGDDRRLQRLAPVAKYVL 64 (239)
Q Consensus 13 ~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~-------~~~~~~~y~~t~~s~~l~ 64 (239)
+++.+..+||+++++ +...|.|.|..|... .+...+.-.+|+.++.++
T Consensus 34 g~~~s~~eLa~~l~l----~~stLsR~l~rLe~~GLV~r~~~~D~R~~v~LT~~G~~~l 88 (96)
T 2obp_A 34 ATPWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALA 88 (96)
T ss_dssp CCCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHHH
T ss_pred CCCcCHHHHHHHhCC----chhhHHHHHHHHHHCCCEEeecCCCCceeEEECHHHHHHH
Confidence 478999999999999 999999999999886 222334467888887765
No 311
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=89.57 E-value=0.24 Score=36.30 Aligned_cols=47 Identities=4% Similarity=-0.074 Sum_probs=39.8
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CCCCCCeEecChhhHHHH
Q 045543 14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AGDDRRLQRLAPVAKYVL 64 (239)
Q Consensus 14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~~~~~~y~~t~~s~~l~ 64 (239)
++.|..+||+++++ ++..+.+.++.|... .+...+.|.+|+.++.+.
T Consensus 30 ~~~s~~ela~~l~i----s~~tv~~~l~~Le~~Gli~r~~~~~~Lt~~g~~~~ 78 (139)
T 2x4h_A 30 EGAKINRIAKDLKI----APSSVFEEVSHLEEKGLVKKKEDGVWITNNGTRSI 78 (139)
T ss_dssp SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEETTEEEECHHHHHHH
T ss_pred CCcCHHHHHHHhCC----ChHHHHHHHHHHHHCCCEEecCCeEEEChhHHHHH
Confidence 68999999999999 999999999999987 222237899999987765
No 312
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=89.57 E-value=0.11 Score=45.23 Aligned_cols=13 Identities=23% Similarity=0.366 Sum_probs=11.7
Q ss_pred cceEEEeCCCCCC
Q 045543 109 IKQLVDVGGGCGK 121 (239)
Q Consensus 109 ~~~vlDvGGG~G~ 121 (239)
..+|+|+|||+|.
T Consensus 214 ~~~vLDl~cG~G~ 226 (369)
T 3bt7_A 214 KGDLLELYCGNGN 226 (369)
T ss_dssp CSEEEEESCTTSH
T ss_pred CCEEEEccCCCCH
Confidence 3679999999999
No 313
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=89.29 E-value=0.18 Score=36.27 Aligned_cols=52 Identities=10% Similarity=0.034 Sum_probs=39.7
Q ss_pred ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C--C--CCCCeEecChhhH
Q 045543 2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A--G--DDRRLQRLAPVAK 61 (239)
Q Consensus 2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~--~--~~~~~y~~t~~s~ 61 (239)
.|...|.+ +|.|+.|||+.+|+ ++..+.+.|+.|... . + ...-.|++++...
T Consensus 22 ~Il~~L~~----~~~~~~eLa~~l~i----s~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~~ 79 (118)
T 3f6o_A 22 AVLGRLSR----GPATVSELAKPFDM----ALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEPF 79 (118)
T ss_dssp HHHHHHHT----CCEEHHHHHTTCCS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHH
T ss_pred HHHHHHHh----CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHHH
Confidence 35666775 79999999999999 999999999999876 1 1 1233577777653
No 314
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=89.10 E-value=0.19 Score=36.11 Aligned_cols=50 Identities=8% Similarity=-0.011 Sum_probs=38.5
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C--CC--CCCeEecChhh
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A--GD--DRRLQRLAPVA 60 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~--~~--~~~~y~~t~~s 60 (239)
|+..|.+ ++.|+.|||+.+|+ ++..+.+.|+.|... . +. ..-.|.+++..
T Consensus 26 IL~~L~~----~~~~~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~ 81 (118)
T 2jsc_A 26 ILVALLD----GVCYPGQLAAHLGL----TRSNVSNHLSCLRGCGLVVATYEGRQVRYALADSH 81 (118)
T ss_dssp HHHHHHT----TCCSTTTHHHHHSS----CHHHHHHHHHHHTTTTSEEEEECSSSEEEEESSHH
T ss_pred HHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEEECCEEEEEEChHH
Confidence 5566765 68999999999999 999999999999887 1 11 12357777653
No 315
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=89.05 E-value=0.32 Score=33.19 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=38.2
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCCCCeEecChhh
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDDRRLQRLAPVA 60 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~~~~y~~t~~s 60 (239)
|+..|.+. ++.|..|||+.+|+ ++..+.+.|+.|... . ......|.+|+..
T Consensus 29 il~~l~~~---~~~s~~ela~~l~i----s~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~ 85 (99)
T 3cuo_A 29 ILCMLSGS---PGTSAGELTRITGL----SASATSQHLARMRDEGLIDSQRDAQRILYSIKNEA 85 (99)
T ss_dssp HHHHHTTC---CSEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHH
T ss_pred HHHHHHhC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHH
Confidence 45566552 58999999999999 999999999999876 1 1123347777664
No 316
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=88.61 E-value=0.19 Score=35.30 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=32.4
Q ss_pred ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
.|+..|.+ ++.|+.|||+.+|+ ++..+.+.|+.|...
T Consensus 30 ~IL~~L~~----~~~~~~ela~~l~i----s~stvs~~L~~L~~~ 66 (106)
T 1r1u_A 30 RIMELLSV----SEASVGHISHQLNL----SQSNVSHQLKLLKSV 66 (106)
T ss_dssp HHHHHHHH----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHT
T ss_pred HHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence 35667775 68999999999999 999999999999876
No 317
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=88.57 E-value=0.2 Score=36.23 Aligned_cols=52 Identities=12% Similarity=0.105 Sum_probs=38.8
Q ss_pred ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---C-CCC--CCeEecChhh
Q 045543 2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---A-GDD--RRLQRLAPVA 60 (239)
Q Consensus 2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~-~~~--~~~y~~t~~s 60 (239)
.|+..|.+. ++.|+.|||+.+|+ ++..+.+.|+.|... . ... ...|.+++..
T Consensus 46 ~IL~~L~~~---~~~s~~eLa~~l~i----s~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~ 103 (122)
T 1u2w_A 46 KITYALCQD---EELCVCDIANILGV----TIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEH 103 (122)
T ss_dssp HHHHHHHHS---SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC----CCEEEESCHH
T ss_pred HHHHHHHHC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEECCEEEEEECHHH
Confidence 356677743 68999999999999 999999999999876 1 221 2257777654
No 318
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*
Probab=88.38 E-value=0.67 Score=39.78 Aligned_cols=83 Identities=12% Similarity=0.059 Sum_probs=56.2
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCc------cccChh
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGE------KERTKQ 207 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g------~~rt~~ 207 (239)
=+++.-.+|..++.+++..+|+.+.+..+ +|.+++.|++.+.+ .+...|--+ +... |- ...|.+
T Consensus 193 tl~iaEGvL~YL~~~~~~~ll~~ia~~f~-~~~~i~yE~i~p~d-------~fg~~M~~~-l~~~-g~pl~sl~~y~t~~ 262 (334)
T 3iei_A 193 TLLIAECVLVYMTPEQSANLLKWAANSFE-RAMFINYEQVNMGD-------RFGQIMIEN-LRRR-QCDLAGVETCKSLE 262 (334)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCTTS-------HHHHHHHHH-HHTT-TCCCTTGGGGGCHH
T ss_pred EEEEEchhhhCCCHHHHHHHHHHHHHhCC-CceEEEEeccCCCC-------HHHHHHHHH-HHHh-CCCCcccccCCCHH
Confidence 47888889999999999999999999875 55677789885432 111111111 1110 11 223667
Q ss_pred hccHHHHHhhCCCceeeEEEc
Q 045543 208 EYYGMALTAKNGFKGVNYESF 228 (239)
Q Consensus 208 e~~~~~ll~~aGf~~~~~~~~ 228 (239)
+. .++|.++||+.+++...
T Consensus 263 ~~--~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 263 SQ--KERLLSNGWETASAVDM 281 (334)
T ss_dssp HH--HHHHHTTTCSEEEEEEH
T ss_pred HH--HHHHHHcCCCcceeecH
Confidence 77 99999999998876653
No 319
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=88.28 E-value=0.57 Score=33.74 Aligned_cols=55 Identities=16% Similarity=0.250 Sum_probs=42.4
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCC---CCeEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDD---RRLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~---~~~y~~t~~s~~l~ 64 (239)
|+..|... +++|..+||+.+++ ++..+.++++.|... . .+. .-.+.+|+.++.+.
T Consensus 38 iL~~l~~~---~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~ 101 (139)
T 3bja_A 38 VIQVLAKS---GKVSMSKLIENMGC----VPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETK 101 (139)
T ss_dssp HHHHHHHS---CSEEHHHHHHHCSS----CCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHc---CCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHH
Confidence 44566654 58999999999999 999999999999986 1 111 22378999998776
No 320
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=88.25 E-value=0.45 Score=34.96 Aligned_cols=53 Identities=13% Similarity=0.124 Sum_probs=41.3
Q ss_pred chHhHhcCCCCCCCHHHHHHhC-CCCCCCChhhHHHHHHHhccC--C----C---CCCCeEecChhhHHHH
Q 045543 4 FEIMAKAGPRAKLSAAEIEAQM-PSHNPNAAVMLDRVLRRSLSS--A----G---DDRRLQRLAPVAKYVL 64 (239)
Q Consensus 4 fd~L~~~g~~~~~t~~eLA~~~-g~~~~~~~~~l~rlL~~L~~~--~----~---~~~~~y~~t~~s~~l~ 64 (239)
...|.. ++++..||++.+ |+ ++..+.+.|+.|... . . ...-.|.+|+.++.+.
T Consensus 41 L~~L~~----g~~~~~eLa~~l~gi----s~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 41 LVALRD----GTHRFSDLRRXMGGV----SEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVS 103 (131)
T ss_dssp HHHGGG----CCEEHHHHHHHSTTC----CHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHH
T ss_pred HHHHHc----CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHHH
Confidence 344554 699999999999 79 999999999999886 1 1 1223599999988765
No 321
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=88.14 E-value=0.26 Score=35.75 Aligned_cols=38 Identities=5% Similarity=0.186 Sum_probs=32.7
Q ss_pred cchHhHhcCCCCC-CCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 3 VFEIMAKAGPRAK-LSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 3 ifd~L~~~g~~~~-~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
|+..|.+.+ +| +|+.|||+++++ +...+.|.|+.|...
T Consensus 31 il~~L~~~~--~~~~t~~eLa~~l~~----s~sTV~r~L~~L~~~ 69 (123)
T 3r0a_A 31 VMKSFLNEP--DRWIDTDALSKSLKL----DVSTVQRSVKKLHEK 69 (123)
T ss_dssp HHHHHHHST--TCCEEHHHHHHHHTS----CHHHHHHHHHHHHHT
T ss_pred HHHHHHHCC--CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence 556677654 56 999999999999 999999999999987
No 322
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=88.12 E-value=0.3 Score=40.15 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=21.4
Q ss_pred HHHHHhhccCCCCcceEEEeCCCCCCCcc
Q 045543 96 MNRILDYYKGFEKIKQLVDVGGGCGKCGW 124 (239)
Q Consensus 96 ~~~~~~~~~~~~~~~~vlDvGGG~G~~~g 124 (239)
...+++..+ ..+..+|||||||+|....
T Consensus 10 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~ 37 (252)
T 1qyr_A 10 IDSIVSAIN-PQKGQAMVEIGPGLAALTE 37 (252)
T ss_dssp HHHHHHHHC-CCTTCCEEEECCTTTTTHH
T ss_pred HHHHHHhcC-CCCcCEEEEECCCCcHHHH
Confidence 456666666 6777899999999998433
No 323
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=88.01 E-value=0.36 Score=33.93 Aligned_cols=47 Identities=19% Similarity=0.137 Sum_probs=37.4
Q ss_pred CCCCHHHHHHhC-CCCCCCChhhHHHHHHHhccC--C----C---CCCCeEecChhhHHHH
Q 045543 14 AKLSAAEIEAQM-PSHNPNAAVMLDRVLRRSLSS--A----G---DDRRLQRLAPVAKYVL 64 (239)
Q Consensus 14 ~~~t~~eLA~~~-g~~~~~~~~~l~rlL~~L~~~--~----~---~~~~~y~~t~~s~~l~ 64 (239)
++.+..|||+.+ |+ ++..+.+.|+.|... . . +..-.|.+|+.++.+.
T Consensus 37 ~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 37 RIIRYGELKRAIPGI----SEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVL 93 (107)
T ss_dssp SCEEHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTH
T ss_pred CCcCHHHHHHHcccC----CHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccHHHHH
Confidence 699999999999 59 999999999999986 1 1 1123599999886543
No 324
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=87.95 E-value=0.49 Score=35.37 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=37.7
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C-------CCCCCeEecChhhHHHH
Q 045543 14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A-------GDDRRLQRLAPVAKYVL 64 (239)
Q Consensus 14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~-------~~~~~~y~~t~~s~~l~ 64 (239)
++.+..||++.+|+ ++..+.+.|+.|... . .+ .-.|.+|+.++.+.
T Consensus 36 g~~~~~eLa~~lgi----s~~tls~~L~~Le~~GlI~r~~~~~d~-~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 36 GLTRFGEFQKSLGL----AKNILAARLRNLVEHGVMVAVPAESGS-HQEYRLTDKGRALF 90 (146)
T ss_dssp TCCSHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECSSSS-CEEEEECHHHHTTH
T ss_pred CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEEecCCCC-eEEEEECchHHHHH
Confidence 69999999999999 999999999999986 1 12 34688998876543
No 325
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=87.94 E-value=0.33 Score=40.53 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=20.4
Q ss_pred HHHHHhhccCCCCcceEEEeCCCCCC
Q 045543 96 MNRILDYYKGFEKIKQLVDVGGGCGK 121 (239)
Q Consensus 96 ~~~~~~~~~~~~~~~~vlDvGGG~G~ 121 (239)
...+++..+ ..+..+|||||||+|.
T Consensus 31 ~~~iv~~~~-~~~~~~VLEIG~G~G~ 55 (279)
T 3uzu_A 31 IDAIVAAIR-PERGERMVEIGPGLGA 55 (279)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTST
T ss_pred HHHHHHhcC-CCCcCEEEEEccccHH
Confidence 455667776 7778899999999999
No 326
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=87.92 E-value=0.87 Score=34.05 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=43.1
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCCC---CeEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDDR---RLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~~---~~y~~t~~s~~l~ 64 (239)
|...|... +++|..|||+.+++ ++..+.++++.|... . .+.+ -.+.+|+.++.++
T Consensus 51 iL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 114 (162)
T 3k0l_A 51 ALSVLAAK---PNLSNAKLAERSFI----KPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKL 114 (162)
T ss_dssp HHHHHHHC---TTCCHHHHHHHHTS----CGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHH
T ss_pred HHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHH
Confidence 44556664 58999999999999 999999999999986 1 1122 2478999998776
No 327
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=87.82 E-value=0.69 Score=33.41 Aligned_cols=55 Identities=16% Similarity=0.179 Sum_probs=43.2
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC------CC---CCCCeEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS------AG---DDRRLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~------~~---~~~~~y~~t~~s~~l~ 64 (239)
|+..|... ++.|..+||+.+++ ++..+.+.++.|... .. ...-.|.+|+.++.+.
T Consensus 36 iL~~l~~~---~~~~~~ela~~l~i----s~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 36 ILQTLLKD---APLHQLALQERLQI----DRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 45566654 58999999999999 999999999999986 11 1223488999998776
No 328
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=87.77 E-value=0.62 Score=34.03 Aligned_cols=55 Identities=16% Similarity=0.197 Sum_probs=43.0
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCC---CCeEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDD---RRLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~---~~~y~~t~~s~~l~ 64 (239)
|...|... +++|..+||+.+++ ++..+.++++.|... . .+. .-.+.+|+.++.+.
T Consensus 36 iL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 99 (145)
T 3g3z_A 36 VLYTLATE---GSRTQKHIGEKWSL----PKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYA 99 (145)
T ss_dssp HHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHH
T ss_pred HHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHH
Confidence 44556654 57999999999999 999999999999986 1 112 23488999998776
No 329
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=87.62 E-value=0.96 Score=32.95 Aligned_cols=55 Identities=16% Similarity=0.193 Sum_probs=41.9
Q ss_pred cchHhHh-cCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CC---CCCeEecChhhHHHH
Q 045543 3 VFEIMAK-AGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GD---DRRLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~-~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~---~~~~y~~t~~s~~l~ 64 (239)
|+..|.. . ++.|..+||+.+++ ++..+.++++.|... . .+ ..-.+.+|+.++.+.
T Consensus 40 iL~~l~~~~---~~~~~~~la~~l~i----~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 104 (147)
T 2hr3_A 40 VLGAIDRLG---GDVTPSELAAAERM----RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNL 104 (147)
T ss_dssp HHHHHHHTT---SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHH
T ss_pred HHHHHHHcC---CCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHH
Confidence 3455555 3 68999999999999 999999999999986 1 11 123478999998766
No 330
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=87.52 E-value=0.63 Score=34.08 Aligned_cols=55 Identities=9% Similarity=0.174 Sum_probs=42.6
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C--C-----CCCCeEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A--G-----DDRRLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~--~-----~~~~~y~~t~~s~~l~ 64 (239)
|+..|... +++|..|||+.+++ ++..+.++++.|... . + .....+.+|+.++.+.
T Consensus 45 iL~~l~~~---~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~ 108 (148)
T 3nrv_A 45 IISVLSSA---SDCSVQKISDILGL----DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELY 108 (148)
T ss_dssp HHHHHHHS---SSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHH
T ss_pred HHHHHHcC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHH
Confidence 44566664 59999999999999 999999999999987 1 1 1134578999998776
No 331
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=87.52 E-value=0.55 Score=34.22 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=42.9
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----C---CCCCeEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----G---DDRRLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~---~~~~~y~~t~~s~~l~ 64 (239)
|...|... +++|..|||+.+++ ++..+.++++.|... . . ...-.+.+|+.++.+.
T Consensus 42 iL~~l~~~---~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 105 (143)
T 3oop_A 42 VLEGIEAN---EPISQKEIALWTKK----DTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKET 105 (143)
T ss_dssp HHHHHHHH---SSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHH
T ss_pred HHHHHHHc---CCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHH
Confidence 34556654 59999999999999 999999999999986 1 1 1233578999998776
No 332
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=87.51 E-value=0.55 Score=34.22 Aligned_cols=55 Identities=13% Similarity=0.135 Sum_probs=38.6
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C--C--CCC---CeEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A--G--DDR---RLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~--~--~~~---~~y~~t~~s~~l~ 64 (239)
|...|... +++|..|||+.+++ ++..+.++++.|... . . +.+ -.+.+|+.++.++
T Consensus 42 vL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 105 (142)
T 3ech_A 42 VLKLIDEQ---RGLNLQDLGRQMCR----DKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIH 105 (142)
T ss_dssp HHHHHHHT---TTCCHHHHHHHHC-------CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHH
T ss_pred HHHHHHhC---CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHH
Confidence 44566664 58999999999999 999999999999987 1 1 112 2368999988766
No 333
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=87.45 E-value=0.5 Score=34.14 Aligned_cols=55 Identities=15% Similarity=0.165 Sum_probs=42.8
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CC----CCC---CeEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AG----DDR---RLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~----~~~---~~y~~t~~s~~l~ 64 (239)
|+..|... ++.|..+||+.+++ ++..+.++++.|... .+ +.+ -.+.+|+.++.+.
T Consensus 43 iL~~l~~~---~~~t~~ela~~l~~----~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 106 (140)
T 2nnn_A 43 ALVRLGET---GPCPQNQLGRLTAM----DAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAEL 106 (140)
T ss_dssp HHHHHHHH---SSBCHHHHHHHTTC----CHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHH
Confidence 45566654 58999999999999 999999999999987 11 112 2378999988765
No 334
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=87.42 E-value=0.32 Score=32.36 Aligned_cols=39 Identities=15% Similarity=0.287 Sum_probs=32.0
Q ss_pred cchHhHhcCCCCCCCHHHHHHhC-----CCCCCCChhhHHHHHHHhccC
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQM-----PSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~-----g~~~~~~~~~l~rlL~~L~~~ 46 (239)
|.+.|.+.+ +++.|++||++.+ ++ +...++|.|+.|+..
T Consensus 22 IL~~l~~~~-~~~~s~~el~~~l~~~~~~i----s~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 22 ILEVLQEPD-NHHVSAEDLYKRLIDMGEEI----GLATVYRVLNQFDDA 65 (83)
T ss_dssp HHHHHTSGG-GSSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHH
T ss_pred HHHHHHhCC-CCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHC
Confidence 556666531 1489999999999 89 999999999999986
No 335
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=87.26 E-value=0.32 Score=36.79 Aligned_cols=53 Identities=15% Similarity=0.281 Sum_probs=40.4
Q ss_pred ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---C-CC--CCCeEecChhhHH
Q 045543 2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---A-GD--DRRLQRLAPVAKY 62 (239)
Q Consensus 2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~-~~--~~~~y~~t~~s~~ 62 (239)
.|...|.+ ++.|+.|||+.+|+ ++..+.+.|+.|... . ++ ..-.|++|+....
T Consensus 62 ~IL~~L~~----~~~t~~eLa~~lgl----s~stvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~~~ 120 (151)
T 3f6v_A 62 RLVQLLTS----GEQTVNNLAAHFPA----SRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGLA 120 (151)
T ss_dssp HHHHHGGG----CCEEHHHHHTTSSS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHH
Confidence 35666765 79999999999999 999999999999886 1 11 1235888876643
No 336
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=87.24 E-value=0.34 Score=33.14 Aligned_cols=53 Identities=15% Similarity=0.083 Sum_probs=39.8
Q ss_pred HhHhcCCCCCCCHHHHHHhCCCCCCCChhh-HHHHHHHhccC--CC-----CCCCeEecChhhHHHH
Q 045543 6 IMAKAGPRAKLSAAEIEAQMPSHNPNAAVM-LDRVLRRSLSS--AG-----DDRRLQRLAPVAKYVL 64 (239)
Q Consensus 6 ~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~-l~rlL~~L~~~--~~-----~~~~~y~~t~~s~~l~ 64 (239)
.|.+.+ .+.|..|||+.+++ ++.. +.++++.|... .+ ...-.+.+|+.++.+.
T Consensus 23 ~l~~~~--~~~t~~eLa~~l~i----s~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~ 83 (95)
T 2pg4_A 23 EFEKKG--YEPSLAEIVKASGV----SEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLA 83 (95)
T ss_dssp HHHHTT--CCCCHHHHHHHHCC----CHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHhcC--CCCCHHHHHHHHCC----CchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHH
Confidence 444532 37999999999999 9999 99999999887 21 1223468898887664
No 337
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=87.17 E-value=0.8 Score=33.84 Aligned_cols=55 Identities=9% Similarity=0.084 Sum_probs=41.8
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C--C--CC---CCeEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A--G--DD---RRLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~--~--~~---~~~y~~t~~s~~l~ 64 (239)
|+..|... +++|..+||+.+++ ++..+.++++.|... . . +. .-.+.+|+.++.+.
T Consensus 48 iL~~l~~~---~~~t~~ela~~l~i----~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 111 (155)
T 3cdh_A 48 VLACLVDN---DAMMITRLAKLSLM----EQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALA 111 (155)
T ss_dssp HHHHHSSC---SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHH
T ss_pred HHHHHHHC---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHH
Confidence 34455553 68999999999999 999999999999986 1 1 11 23478999988766
No 338
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=87.16 E-value=0.71 Score=33.98 Aligned_cols=56 Identities=9% Similarity=0.074 Sum_probs=40.9
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C--C--CCCC---eEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A--G--DDRR---LQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~--~--~~~~---~y~~t~~s~~l~ 64 (239)
|...|...+ +++|..|||+.+++ ++..+.++++.|... . . +.++ .+.+|+.++.+.
T Consensus 44 vL~~l~~~~--~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 108 (150)
T 3fm5_A 44 VLVLACEQA--EGVNQRGVAATMGL----DPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLR 108 (150)
T ss_dssp HHHHHHHST--TCCCSHHHHHHHTC----CHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHH
T ss_pred HHHHHHhCC--CCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHH
Confidence 344565433 57899999999999 999999999999997 1 1 1122 378999988776
No 339
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=87.01 E-value=1 Score=33.31 Aligned_cols=55 Identities=13% Similarity=0.054 Sum_probs=42.7
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CC---CCCeEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GD---DRRLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~---~~~~y~~t~~s~~l~ 64 (239)
|+..|... +++|..+||+.+++ ++..+.++++.|... . .+ ..-.+.+|+.++.+.
T Consensus 49 iL~~l~~~---~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 112 (154)
T 2eth_A 49 AFLYVALF---GPKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIF 112 (154)
T ss_dssp HHHHHHHH---CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHH
T ss_pred HHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHH
Confidence 45566664 58999999999999 999999999999986 1 11 122478999998776
No 340
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=86.98 E-value=0.13 Score=36.36 Aligned_cols=36 Identities=11% Similarity=0.155 Sum_probs=31.2
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
|+..|.+ ++.|+.|||+.+|+ ++..+.+.|+.|...
T Consensus 30 IL~~L~~----~~~s~~eLa~~lgi----s~stvs~~L~~L~~~ 65 (108)
T 2kko_A 30 ILDLLAQ----GERAVEAIATATGM----NLTTASANLQALKSG 65 (108)
T ss_dssp HHHHHTT----CCEEHHHHHHHHTC----CHHHHHHHHHHHHHH
T ss_pred HHHHHHc----CCcCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence 4556654 68999999999999 999999999999876
No 341
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=86.97 E-value=0.65 Score=34.59 Aligned_cols=49 Identities=10% Similarity=0.089 Sum_probs=37.1
Q ss_pred HhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC----CCCCCCeEecChhhH
Q 045543 6 IMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS----AGDDRRLQRLAPVAK 61 (239)
Q Consensus 6 ~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~----~~~~~~~y~~t~~s~ 61 (239)
.|+..+ ++ |+++||+++++ ++..++++|..|... ...+.|.|.++.-..
T Consensus 17 ~La~~~--~~-s~~~IA~~~~i----~~~~l~kIl~~L~~aGlv~s~rG~GGy~Lar~p~ 69 (145)
T 1xd7_A 17 LISMDE--KT-SSEIIADSVNT----NPVVVRRMISLLKKADILTSRAGVPGASLKKDPA 69 (145)
T ss_dssp HHHTCS--CC-CHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECCSSSSSCEESSCGG
T ss_pred HHHhCC--CC-CHHHHHHHHCc----CHHHHHHHHHHHHHCCceEeecCCCCceecCCHH
Confidence 345432 35 99999999999 999999999999886 122277798875543
No 342
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=86.84 E-value=0.56 Score=32.08 Aligned_cols=46 Identities=9% Similarity=0.114 Sum_probs=37.4
Q ss_pred CCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C-CCCC---CeEecChhhHHHH
Q 045543 15 KLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A-GDDR---RLQRLAPVAKYVL 64 (239)
Q Consensus 15 ~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~-~~~~---~~y~~t~~s~~l~ 64 (239)
++|..+||+.+++ ++..+.++++.|... . .+.+ ..|.+|+.++.+.
T Consensus 30 ~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~~G~~~~ 81 (95)
T 2qvo_A 30 DVYIQYIASKVNS----PHSYVWLIIKKFEEAKMVECELEGRTKIIRLTDKGQKIA 81 (95)
T ss_dssp CEEHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHH
T ss_pred CcCHHHHHHHHCc----CHHHHHHHHHHHHHCcCccCCCCCCeEEEEEChhHHHHH
Confidence 4999999999999 999999999999887 2 1222 2588999987765
No 343
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=86.79 E-value=1.1 Score=32.61 Aligned_cols=47 Identities=4% Similarity=-0.000 Sum_probs=38.3
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCC---CCeEecChhhHHHH
Q 045543 14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDD---RRLQRLAPVAKYVL 64 (239)
Q Consensus 14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~---~~~y~~t~~s~~l~ 64 (239)
++.|..+||+.+++ ++..+.++++.|... . .+. .-.+.+|+.++.+.
T Consensus 49 ~~~~~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~ 104 (146)
T 2gxg_A 49 GPKTMAYLANRYFV----TQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETF 104 (146)
T ss_dssp SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHH
Confidence 69999999999999 999999999999986 1 111 22478999988766
No 344
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=86.50 E-value=0.89 Score=32.72 Aligned_cols=55 Identities=18% Similarity=0.231 Sum_probs=42.3
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCCCC---eEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDDRR---LQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~~~---~y~~t~~s~~l~ 64 (239)
|...|... ++.|..+||+.+++ ++..+.++++.|... . .+.++ .+.+|+.++.+.
T Consensus 39 iL~~l~~~---~~~~~~~la~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 102 (138)
T 1jgs_A 39 VLCSIRCA---ACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAIC 102 (138)
T ss_dssp HHHHHHHH---SSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHH
T ss_pred HHHHHHhc---CCCCHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHH
Confidence 34556654 58999999999999 999999999999986 1 12222 378999988776
No 345
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=86.07 E-value=0.29 Score=35.52 Aligned_cols=37 Identities=11% Similarity=0.267 Sum_probs=32.2
Q ss_pred ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
.|+..|.+ ++.|+.|||+.+|+ ++..+.+.|+.|...
T Consensus 50 ~IL~~L~~----~~~s~~ela~~lgi----s~stvs~~L~~Le~~ 86 (122)
T 1r1t_A 50 RLLSLLAR----SELCVGDLAQAIGV----SESAVSHQLRSLRNL 86 (122)
T ss_dssp HHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHT
T ss_pred HHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence 35666765 68999999999999 999999999999886
No 346
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=85.98 E-value=0.3 Score=40.01 Aligned_cols=25 Identities=32% Similarity=0.667 Sum_probs=20.4
Q ss_pred HHHHHhhccCCCCcceEEEeCCCCCC
Q 045543 96 MNRILDYYKGFEKIKQLVDVGGGCGK 121 (239)
Q Consensus 96 ~~~~~~~~~~~~~~~~vlDvGGG~G~ 121 (239)
...+++..+ ..+..+|||||||+|.
T Consensus 20 ~~~iv~~~~-~~~~~~VLDiG~G~G~ 44 (249)
T 3ftd_A 20 LKKIAEELN-IEEGNTVVEVGGGTGN 44 (249)
T ss_dssp HHHHHHHTT-CCTTCEEEEEESCHHH
T ss_pred HHHHHHhcC-CCCcCEEEEEcCchHH
Confidence 456677776 6777899999999998
No 347
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=85.80 E-value=0.94 Score=33.67 Aligned_cols=55 Identities=25% Similarity=0.339 Sum_probs=42.3
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CC-------CCCCeEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AG-------DDRRLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~-------~~~~~y~~t~~s~~l~ 64 (239)
|...|... +++|..|||+.+++ ++..+.++++.|... .+ .....+.+|+.++.+.
T Consensus 54 iL~~l~~~---~~~t~~ela~~l~i----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 117 (162)
T 2fa5_A 54 VITILALY---PGSSASEVSDRTAM----DKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVY 117 (162)
T ss_dssp HHHHHHHS---TTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHH
T ss_pred HHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHH
Confidence 44566653 68999999999999 999999999999987 11 1124478999988766
No 348
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=85.78 E-value=0.99 Score=33.09 Aligned_cols=55 Identities=13% Similarity=0.232 Sum_probs=42.7
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----C---CCCCeEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----G---DDRRLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~---~~~~~y~~t~~s~~l~ 64 (239)
|...|... +++|..+||+.+++ ++..+.++++.|... . . ...-.+.+|+.++.+.
T Consensus 45 iL~~l~~~---~~~t~~ela~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 108 (152)
T 3bj6_A 45 ILEGLSLT---PGATAPQLGAALQM----KRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAII 108 (152)
T ss_dssp HHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHH
T ss_pred HHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHH
Confidence 44556654 58999999999999 999999999999986 1 1 1123578999988765
No 349
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=85.70 E-value=0.88 Score=33.28 Aligned_cols=55 Identities=13% Similarity=0.190 Sum_probs=42.3
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCCC---CeEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDDR---RLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~~---~~y~~t~~s~~l~ 64 (239)
|+..|... ++.|..+||+.+++ ++..+.++++.|... . .+.+ -.+.+|+.++.+.
T Consensus 47 iL~~l~~~---~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 110 (150)
T 2rdp_A 47 ALQWLLEE---GDLTVGELSNKMYL----ACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERII 110 (150)
T ss_dssp HHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHH
T ss_pred HHHHHHHc---CCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHH
Confidence 44556654 58999999999999 999999999999986 1 1122 2378999988766
No 350
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=85.67 E-value=1.1 Score=32.51 Aligned_cols=55 Identities=18% Similarity=0.162 Sum_probs=41.9
Q ss_pred cchHh-HhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC------CCC---CCCeEecChhhHHHH
Q 045543 3 VFEIM-AKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS------AGD---DRRLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L-~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~------~~~---~~~~y~~t~~s~~l~ 64 (239)
|...| ... ++.|..+||+.+++ ++..+.++++.|... ..+ ..-.+.+|+.++.+.
T Consensus 42 iL~~l~~~~---~~~t~~~la~~l~~----s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 106 (146)
T 2fbh_A 42 VLLHLARHR---DSPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLI 106 (146)
T ss_dssp HHHHHHHCS---SCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHH
T ss_pred HHHHHHHcC---CCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHH
Confidence 34556 432 68999999999999 999999999999986 111 123478999988766
No 351
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=85.41 E-value=0.9 Score=32.98 Aligned_cols=55 Identities=9% Similarity=0.058 Sum_probs=42.7
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC------CCCC---CCeEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS------AGDD---RRLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~------~~~~---~~~y~~t~~s~~l~ 64 (239)
|+..|... +++|..+||+.+++ ++..+.++++.|... ..+. .-.+.+|+.++.+.
T Consensus 34 iL~~l~~~---~~~t~~~la~~l~~----s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 97 (144)
T 1lj9_A 34 YLVRVCEN---PGIIQEKIAELIKV----DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVY 97 (144)
T ss_dssp HHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHC---cCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHH
Confidence 45566664 58999999999999 999999999999986 1111 22378999998766
No 352
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=85.37 E-value=0.66 Score=33.42 Aligned_cols=55 Identities=13% Similarity=0.193 Sum_probs=42.0
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CC----CCCC---eEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AG----DDRR---LQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~----~~~~---~y~~t~~s~~l~ 64 (239)
|...|... ++.|..|||+.+++ ++..+.++++.|... .+ +.++ .+.+|+.++.+.
T Consensus 34 iL~~l~~~---~~~~~~ela~~l~~----s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~ 97 (138)
T 3bpv_A 34 CLLRIHRE---PGIKQDELATFFHV----DKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEII 97 (138)
T ss_dssp HHHHHHHS---TTCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTH
T ss_pred HHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHH
Confidence 34556654 68999999999999 999999999999987 11 2222 277899887655
No 353
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=85.03 E-value=0.9 Score=33.83 Aligned_cols=55 Identities=15% Similarity=0.163 Sum_probs=42.8
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----C---CCCCeEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----G---DDRRLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~---~~~~~y~~t~~s~~l~ 64 (239)
|+..|... +++|..+||+.+++ ++..+.++++.|... . . ...-.+.+|+.++.+.
T Consensus 57 iL~~l~~~---~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 120 (162)
T 3cjn_A 57 ALAILSAK---DGLPIGTLGIFAVV----EQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVY 120 (162)
T ss_dssp HHHHHHHS---CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHH
T ss_pred HHHHHHHC---CCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 45566664 58999999999999 999999999999986 1 1 1123478999988766
No 354
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=84.71 E-value=1 Score=41.31 Aligned_cols=19 Identities=5% Similarity=0.246 Sum_probs=16.9
Q ss_pred HHHHHHHhhCCCCceEEEE
Q 045543 152 SLLKNCYEAIPGNGKIIII 170 (239)
Q Consensus 152 ~iL~~~~~aL~pgg~lli~ 170 (239)
..++++.+.|+|||++.++
T Consensus 376 ~Fl~~~l~~Lk~gGr~aiV 394 (544)
T 3khk_A 376 AWMLHMLYHLAPTGSMALL 394 (544)
T ss_dssp HHHHHHHHTEEEEEEEEEE
T ss_pred HHHHHHHHHhccCceEEEE
Confidence 5889999999999998885
No 355
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=84.59 E-value=1 Score=33.61 Aligned_cols=55 Identities=13% Similarity=0.157 Sum_probs=42.8
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C--C-----CCCCeEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A--G-----DDRRLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~--~-----~~~~~y~~t~~s~~l~ 64 (239)
|...|... +++|..|||+.+++ ++..+.++++.|... . + ...-.+.+|+.++.+.
T Consensus 58 vL~~l~~~---~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 121 (161)
T 3e6m_A 58 LLSSLSAY---GELTVGQLATLGVM----EQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKL 121 (161)
T ss_dssp HHHHHHHH---SEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHH
T ss_pred HHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHH
Confidence 34456654 58999999999999 999999999999987 1 1 1223578999998776
No 356
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=83.96 E-value=1.1 Score=33.27 Aligned_cols=47 Identities=11% Similarity=0.082 Sum_probs=39.3
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---CCCCCCeEecChhhHHHH
Q 045543 14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---AGDDRRLQRLAPVAKYVL 64 (239)
Q Consensus 14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~~~~~~~y~~t~~s~~l~ 64 (239)
++.|..+||+.+++ ++..+.+.++.|... ....+..+.+|+.++.+.
T Consensus 53 ~~~~~~~la~~l~v----s~~tvs~~l~~Le~~Glv~r~~~~~~~lT~~g~~~~ 102 (155)
T 2h09_A 53 GEARQVDMAARLGV----SQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEKLA 102 (155)
T ss_dssp SCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTCEEEETTTEEEECHHHHHHH
T ss_pred CCcCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEecCCceEEChhHHHHH
Confidence 58999999999999 999999999999887 222346788999987765
No 357
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=83.89 E-value=1.1 Score=32.91 Aligned_cols=55 Identities=15% Similarity=0.212 Sum_probs=41.7
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCC---CCeEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDD---RRLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~---~~~y~~t~~s~~l~ 64 (239)
|...|... +++|..+||+.+++ ++..+.++++.|... . .+. .-.+.+|+.++.+.
T Consensus 52 iL~~l~~~---~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 115 (153)
T 2pex_A 52 VMLVLWET---DERSVSEIGERLYL----DSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALR 115 (153)
T ss_dssp HHHHHHHS---CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGG
T ss_pred HHHHHHhC---CCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHH
Confidence 44556654 58999999999999 999999999999987 1 111 22478899888765
No 358
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=83.83 E-value=0.99 Score=34.03 Aligned_cols=55 Identities=13% Similarity=0.194 Sum_probs=42.4
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCC---CCeEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDD---RRLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~---~~~y~~t~~s~~l~ 64 (239)
|...|... +++|..|||+.+++ ++..+.++++.|... . .+. .-.+.+|+.++.+.
T Consensus 50 iL~~L~~~---~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~ 113 (168)
T 2nyx_A 50 TLVILSNH---GPINLATLATLLGV----QPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVV 113 (168)
T ss_dssp HHHHHHHH---CSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHc---CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHH
Confidence 44556654 58999999999999 999999999999986 1 111 22378999988766
No 359
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=83.68 E-value=1.1 Score=32.34 Aligned_cols=57 Identities=11% Similarity=0.146 Sum_probs=42.7
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCC---CCeEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDD---RRLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~---~~~y~~t~~s~~l~ 64 (239)
|...|...+ ++++|..|||+.+++ ++..+.++++.|... . .+. .-.+.+|+.++.+.
T Consensus 36 vL~~l~~~~-~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~ 101 (139)
T 3eco_A 36 TLGYLYAHQ-QDGLTQNDIAKALQR----TGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLV 101 (139)
T ss_dssp HHHHHHHST-TTCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHH
T ss_pred HHHHHHhcC-CCCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHH
Confidence 344555542 248999999999999 999999999999986 1 112 23468999998776
No 360
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=83.67 E-value=1.2 Score=32.40 Aligned_cols=54 Identities=7% Similarity=0.257 Sum_probs=39.6
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C--C-----CCCCeEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A--G-----DDRRLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~--~-----~~~~~y~~t~~s~~l~ 64 (239)
|...|.. +++|..|||+.+++ ++..+.++++.|... . . ...-.+.+|+.++.+.
T Consensus 43 iL~~l~~----~~~t~~eLa~~l~~----s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~ 105 (146)
T 3tgn_A 43 ILMLLSE----ESLTNSELARRLNV----SQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIA 105 (146)
T ss_dssp HHHHHTT----CCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHH
T ss_pred HHHHHHh----CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHH
Confidence 3445555 34999999999999 999999999999986 1 1 1123478888887765
No 361
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=83.64 E-value=1.2 Score=32.18 Aligned_cols=57 Identities=9% Similarity=0.186 Sum_probs=41.3
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCC---CCeEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDD---RRLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~---~~~y~~t~~s~~l~ 64 (239)
|...|...+ ++++|..+||+.+++ ++..+.++++.|... . .+. .-.+.+|+.++.+.
T Consensus 39 iL~~l~~~~-~~~~~~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~ 104 (141)
T 3bro_A 39 IIDYLSRNK-NKEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLE 104 (141)
T ss_dssp HHHHHHHTT-TSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTH
T ss_pred HHHHHHHCC-CCCcCHHHHHHHHCC----CcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHH
Confidence 344566542 128999999999999 999999999999986 1 111 22467888886554
No 362
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=83.62 E-value=0.8 Score=33.25 Aligned_cols=55 Identities=9% Similarity=0.122 Sum_probs=42.6
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CC----CCCC---eEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AG----DDRR---LQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~----~~~~---~y~~t~~s~~l~ 64 (239)
|+..|... ++.|..+||+.+++ ++..+.++++.|... .+ +.++ .+.+|+.++.+.
T Consensus 38 iL~~l~~~---~~~~~~~la~~l~~----s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~ 101 (145)
T 2a61_A 38 ILQKIYFE---GPKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVI 101 (145)
T ss_dssp HHHHHHHH---CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHc---CCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHH
Confidence 44556654 58999999999999 999999999999987 11 1222 478999998766
No 363
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=83.60 E-value=1.1 Score=33.82 Aligned_cols=56 Identities=11% Similarity=0.077 Sum_probs=42.1
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C--C--C---CCCeEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A--G--D---DRRLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~--~--~---~~~~y~~t~~s~~l~ 64 (239)
|...|...+ +++|..|||+.+++ ++..+.++++.|... . + + ..-.+.+|+.++.++
T Consensus 58 vL~~L~~~~--~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 122 (166)
T 3deu_A 58 TLHNIHQLP--PDQSQIQLAKAIGI----EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLI 122 (166)
T ss_dssp HHHHHHHSC--SSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHH
T ss_pred HHHHHHHcC--CCCCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHH
Confidence 344565532 57999999999999 999999999999987 1 1 1 123578999998776
No 364
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=83.59 E-value=1 Score=33.51 Aligned_cols=55 Identities=5% Similarity=0.051 Sum_probs=42.1
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCCC---CeEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDDR---RLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~~---~~y~~t~~s~~l~ 64 (239)
|...|... +++|..|||+.+++ ++..+.++++.|... . .+.+ -.+.+|+.++.+.
T Consensus 55 vL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 118 (159)
T 3s2w_A 55 FLMRLYRE---DGINQESLSDYLKI----DKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLE 118 (159)
T ss_dssp HHHHHHHS---CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHH
T ss_pred HHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHH
Confidence 34456654 68999999999999 999999999999986 1 1122 2478999998776
No 365
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=83.51 E-value=3.3 Score=34.97 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=19.0
Q ss_pred HHHHhhccCCCCcceEEEeCCCCCC
Q 045543 97 NRILDYYKGFEKIKQLVDVGGGCGK 121 (239)
Q Consensus 97 ~~~~~~~~~~~~~~~vlDvGGG~G~ 121 (239)
..+.+.+- +....+|||+||++|.
T Consensus 84 ~ei~~~~~-l~~~~~VlDLGaapGG 107 (321)
T 3lkz_A 84 RWLVERRF-LEPVGKVIDLGCGRGG 107 (321)
T ss_dssp HHHHHTTS-CCCCEEEEEETCTTCH
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCc
Confidence 45555655 7777899999999999
No 366
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=83.50 E-value=0.74 Score=33.24 Aligned_cols=55 Identities=13% Similarity=0.160 Sum_probs=42.3
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCCCC---eEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDDRR---LQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~~~---~y~~t~~s~~l~ 64 (239)
|+..|... +++|..+||+.+++ ++..+.++++.|... . .+.++ .+.+|+.++.+.
T Consensus 41 iL~~l~~~---~~~t~~ela~~l~~----s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 104 (142)
T 2fbi_A 41 VIRILRQQ---GEMESYQLANQACI----LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCF 104 (142)
T ss_dssp HHHHHHHH---CSEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHc---CCCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHH
Confidence 44556654 58999999999999 999999999999986 1 11222 378899988765
No 367
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=83.40 E-value=2.8 Score=31.60 Aligned_cols=57 Identities=12% Similarity=0.077 Sum_probs=43.5
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCC-CCCCCChhhHHHHHHHhccC--C-----C---CCCC----eEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMP-SHNPNAAVMLDRVLRRSLSS--A-----G---DDRR----LQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g-~~~~~~~~~l~rlL~~L~~~--~-----~---~~~~----~y~~t~~s~~l~ 64 (239)
|+..|..++ .+..|++||++.++ + +...+++-|+.|+.. . . ...| .|++|+.++.++
T Consensus 34 IL~~Ll~~p-~~~~ta~eL~~~l~~l----S~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l 105 (151)
T 3u1d_A 34 VLHQILAQP-DGVLSVEELLYRNPDE----TEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALL 105 (151)
T ss_dssp HHHHHHHST-TSCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHH
T ss_pred HHHHHHcCC-CCCCCHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHH
Confidence 455555532 25689999999999 9 999999999999986 1 0 1123 799999999876
No 368
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=83.28 E-value=1 Score=39.00 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=20.6
Q ss_pred HHHHHHHHhhCCCCceEEEEeeecC
Q 045543 151 LSLLKNCYEAIPGNGKIIIIDSTTV 175 (239)
Q Consensus 151 ~~iL~~~~~aL~pgg~lli~d~~~~ 175 (239)
.+||+++.+.|+|||+|+-...-+.
T Consensus 264 ~~iL~~a~~~lkpGG~LVYsTCSl~ 288 (359)
T 4fzv_A 264 VQLLAAGLLATKPGGHVVYSTCSLS 288 (359)
T ss_dssp HHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred HHHHHHHHhcCCCCcEEEEEeCCCc
Confidence 5799999999999999887765443
No 369
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=83.15 E-value=0.59 Score=34.08 Aligned_cols=47 Identities=13% Similarity=0.109 Sum_probs=37.9
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CC---CCCeEecChhhHHHH
Q 045543 14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GD---DRRLQRLAPVAKYVL 64 (239)
Q Consensus 14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~---~~~~y~~t~~s~~l~ 64 (239)
++.|..|||+.+++ ++..+.++++.|... . .+ ..-.+.+|+.++.+.
T Consensus 49 ~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 104 (140)
T 3hsr_A 49 EKLNIKKLGERVFL----DSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIK 104 (140)
T ss_dssp CEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTH
T ss_pred CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHH
Confidence 68999999999999 999999999999987 1 11 223578999998765
No 370
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=82.87 E-value=1.4 Score=31.94 Aligned_cols=55 Identities=9% Similarity=0.173 Sum_probs=42.2
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CC---CCCeEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GD---DRRLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~---~~~~y~~t~~s~~l~ 64 (239)
|...|... ++.|..+||+.+++ ++..+.+.++.|... . .+ ..-.+.+|+.++.+.
T Consensus 42 iL~~l~~~---~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 105 (142)
T 2bv6_A 42 VLTILWDE---SPVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIR 105 (142)
T ss_dssp HHHHHHHS---SEEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHc---CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHH
Confidence 44556654 58999999999999 999999999999986 1 11 122478899998776
No 371
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=82.68 E-value=1.1 Score=32.26 Aligned_cols=47 Identities=4% Similarity=-0.001 Sum_probs=37.7
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCC---CCeEecChhhHHHH
Q 045543 14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDD---RRLQRLAPVAKYVL 64 (239)
Q Consensus 14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~---~~~y~~t~~s~~l~ 64 (239)
++.|..|||+.+++ ++..+.++++.|... . .+. .-.+.+|+.++.+.
T Consensus 52 ~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~ 107 (127)
T 2frh_A 52 KEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKI 107 (127)
T ss_dssp SEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHH
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 58999999999999 999999999999986 1 122 23467898887765
No 372
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=82.63 E-value=0.78 Score=32.27 Aligned_cols=37 Identities=11% Similarity=0.226 Sum_probs=31.2
Q ss_pred ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
||+..|.+ |..|-.|||+.+|+ +...+.|+=|+|-.+
T Consensus 49 ~l~~~L~~----ge~TQREIA~~lGi----S~stISRi~r~L~~l 85 (101)
T 1jhg_A 49 RIIEELLR----GEMSQRELKNELGA----GIATITRGSNSLKAA 85 (101)
T ss_dssp HHHHHHHH----CCSCHHHHHHHHCC----CHHHHHHHHHHHHHS
T ss_pred HHHHHHHc----CCcCHHHHHHHHCC----ChhhhhHHHHHHHHc
Confidence 56666776 68999999999999 999999998887654
No 373
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=82.48 E-value=2.7 Score=31.70 Aligned_cols=16 Identities=25% Similarity=0.177 Sum_probs=13.0
Q ss_pred CCCcceEEEeCCCCCC
Q 045543 106 FEKIKQLVDVGGGCGK 121 (239)
Q Consensus 106 ~~~~~~vlDvGGG~G~ 121 (239)
+....++|+||||.|.
T Consensus 33 ~~~~~rVlEVG~G~g~ 48 (153)
T 2k4m_A 33 SGPGTRVVEVGAGRFL 48 (153)
T ss_dssp SCSSSEEEEETCTTCC
T ss_pred CCCCCcEEEEccCCCh
Confidence 3445799999999995
No 374
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=82.24 E-value=1.8 Score=32.13 Aligned_cols=38 Identities=18% Similarity=0.172 Sum_probs=32.8
Q ss_pred cchHhHhcCCCCCCCHHHHHHhC-----CCCCCCChhhHHHHHHHhccC
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQM-----PSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~-----g~~~~~~~~~l~rlL~~L~~~ 46 (239)
|++.|.+.+ ++.|++||.+.+ ++ +...++|.|+.|+..
T Consensus 27 Il~~L~~~~--~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~ 69 (145)
T 2fe3_A 27 ILEYLVNSM--AHPTADDIYKALEGKFPNM----SVATVYNNLRVFRES 69 (145)
T ss_dssp HHHHHHHCS--SCCCHHHHHHHHGGGCTTC----CHHHHHHHHHHHHHT
T ss_pred HHHHHHhCC--CCCCHHHHHHHHHHhCCCC----ChhhHHHHHHHHHHC
Confidence 567777643 799999999999 67 899999999999987
No 375
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=81.99 E-value=0.94 Score=30.99 Aligned_cols=37 Identities=14% Similarity=0.309 Sum_probs=32.0
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
|...|... ++.|..|||+.+++ ++..+.+.|+.|...
T Consensus 25 il~~l~~~---~~~s~~ela~~l~i----s~~tv~~~l~~L~~~ 61 (109)
T 1sfx_A 25 IYSLLLER---GGMRVSEIARELDL----SARFVRDRLKVLLKR 61 (109)
T ss_dssp HHHHHHHH---CCBCHHHHHHHHTC----CHHHHHHHHHHHHHT
T ss_pred HHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHC
Confidence 45566654 58999999999999 999999999999887
No 376
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=81.94 E-value=2.3 Score=40.18 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=19.7
Q ss_pred HHHHHhhccCCCCcceEEEeCCCCCC
Q 045543 96 MNRILDYYKGFEKIKQLVDVGGGCGK 121 (239)
Q Consensus 96 ~~~~~~~~~~~~~~~~vlDvGGG~G~ 121 (239)
+..++.... |.+..+|+|.+||+|.
T Consensus 179 Aa~ll~~~~-~~~~~~llDP~CGSGt 203 (703)
T 3v97_A 179 AAAIVMRSG-WQPGTPLLDPMCGSGT 203 (703)
T ss_dssp HHHHHHHTT-CCTTSCEEETTCTTSH
T ss_pred HHHHHHhhC-CCCCCeEEecCCCCcH
Confidence 445555555 8888899999999998
No 377
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=81.93 E-value=1.1 Score=33.00 Aligned_cols=55 Identities=15% Similarity=0.099 Sum_probs=42.2
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CC---CCCeEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GD---DRRLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~---~~~~y~~t~~s~~l~ 64 (239)
|+..|... ++.|..+||+.+++ ++..+.++++.|... . .+ ..-.+.+|+.++.+.
T Consensus 42 iL~~l~~~---~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 105 (155)
T 1s3j_A 42 VLASLKKH---GSLKVSEIAERMEV----KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKF 105 (155)
T ss_dssp HHHHHHHH---SEEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHH
T ss_pred HHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHH
Confidence 44556654 58999999999999 999999999999986 1 11 122478999988766
No 378
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=81.82 E-value=1.3 Score=32.41 Aligned_cols=56 Identities=4% Similarity=0.081 Sum_probs=35.1
Q ss_pred chHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CC----CCC---CeEecChhhHHHH
Q 045543 4 FEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AG----DDR---RLQRLAPVAKYVL 64 (239)
Q Consensus 4 fd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~----~~~---~~y~~t~~s~~l~ 64 (239)
...|...+ ++++|..+||+.+++ ++..+.++++.|... .+ +.+ -.+.+|+.++.+.
T Consensus 47 L~~l~~~~-~~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 111 (148)
T 3jw4_A 47 IGYIYENQ-ESGIIQKDLAQFFGR----RGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALV 111 (148)
T ss_dssp HHHHHHHT-TTCCCHHHHHHC----------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHH
T ss_pred HHHHHhCC-CCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHH
Confidence 34455431 258999999999999 999999999999986 11 112 2467899988776
No 379
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=81.77 E-value=0.95 Score=33.29 Aligned_cols=55 Identities=13% Similarity=0.099 Sum_probs=41.9
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCC---CCeEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDD---RRLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~---~~~y~~t~~s~~l~ 64 (239)
|...|... +++|..+||+.+++ ++..+.++++.|... . .+. .-.+.+|+.++.+.
T Consensus 46 iL~~l~~~---~~~~~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 109 (149)
T 4hbl_A 46 VMLTLWEE---NPQTLNSIGRHLDL----SSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQ 109 (149)
T ss_dssp HHHHHHHS---SSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHH
T ss_pred HHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHH
Confidence 34456554 68999999999999 999999999999886 1 111 23588999998776
No 380
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=81.67 E-value=4.2 Score=38.07 Aligned_cols=84 Identities=17% Similarity=0.153 Sum_probs=57.7
Q ss_pred ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCC------ccccChh
Q 045543 134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSG------EKERTKQ 207 (239)
Q Consensus 134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~------g~~rt~~ 207 (239)
=+++.-.+|..++.+++.++|+.+.+ + |++.+++.|.+.+..+..+ +...+ +..+... + -...+.+
T Consensus 219 tl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~~~~~~~~e~~~~~~~~d~----f~~~m-~~~~~~~-g~~l~~~~~~~~~~ 290 (695)
T 2zwa_A 219 KVFVAEVSLAYMKPERSDSIIEATSK-M-ENSHFIILEQLIPKGPFEP----FSKQM-LAHFKRN-DSPLQSVLKYNTIE 290 (695)
T ss_dssp EEEEEESSGGGSCHHHHHHHHHHHHT-S-SSEEEEEEEECCTTCTTSH----HHHHH-HHHHHHT-TCCCCGGGTCCSHH
T ss_pred EEEeeeeEEEEcCHHHHHHHHHHHhh-C-CCceEEEEEeecCCCCCCh----HHHHH-HHHHHHc-CCCCCccccCCCHH
Confidence 47788899999999999999999985 5 6888889999877543321 22222 1111110 1 1233678
Q ss_pred hccHHHHHhhCCCceeeEEE
Q 045543 208 EYYGMALTAKNGFKGVNYES 227 (239)
Q Consensus 208 e~~~~~ll~~aGf~~~~~~~ 227 (239)
+. .++|.+.||+.+....
T Consensus 291 ~~--~~~~~~~Gw~~v~~~~ 308 (695)
T 2zwa_A 291 SQ--VQRFNKLGFAYVNVGD 308 (695)
T ss_dssp HH--HHHHHHTTCCEEEEEE
T ss_pred HH--HHHHHHCCCCCcceee
Confidence 88 9999999998776554
No 381
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=81.51 E-value=1.4 Score=32.14 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=33.1
Q ss_pred cchHhHhcCCCCCCCHHHHHHhC-----CCCCCCChhhHHHHHHHhccC
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQM-----PSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~-----g~~~~~~~~~l~rlL~~L~~~ 46 (239)
|++.|.+.+ ++.|++||.+.+ ++ +...++|.|+.|+..
T Consensus 16 Il~~l~~~~--~~~sa~ei~~~l~~~~~~i----s~~TVYR~L~~L~e~ 58 (131)
T 2o03_A 16 ISTLLETLD--DFRSAQELHDELRRRGENI----GLTTVYRTLQSMASS 58 (131)
T ss_dssp HHHHHHHCC--SCEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHTT
T ss_pred HHHHHHhCC--CCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHC
Confidence 667787643 799999999999 78 999999999999997
No 382
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=81.34 E-value=0.86 Score=32.34 Aligned_cols=37 Identities=8% Similarity=0.120 Sum_probs=32.4
Q ss_pred ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
.|+..|.+ ++.|..|||+.+++ ++..+.+.|+.|...
T Consensus 36 ~il~~L~~----~~~s~~ela~~l~i----s~stvsr~l~~Le~~ 72 (119)
T 2lkp_A 36 MILTQLRN----GPLPVTDLAEAIGM----EQSAVSHQLRVLRNL 72 (119)
T ss_dssp HHHHHHHH----CCCCHHHHHHHHSS----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence 35677776 58999999999999 999999999999876
No 383
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=80.99 E-value=2.7 Score=31.18 Aligned_cols=54 Identities=11% Similarity=0.102 Sum_probs=41.2
Q ss_pred hHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC------CCCCCC---eEecChhhHHHH
Q 045543 5 EIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS------AGDDRR---LQRLAPVAKYVL 64 (239)
Q Consensus 5 d~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~------~~~~~~---~y~~t~~s~~l~ 64 (239)
-.|...+ ++.+..|||+.+++ ++..+.++++.|... ..+.++ ...+|+.++.+.
T Consensus 38 ~~L~~~~--~~~~~~eLa~~l~~----~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~ 100 (151)
T 4aik_A 38 YNINRLP--PEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPII 100 (151)
T ss_dssp HHHHHSC--TTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHH
T ss_pred HHHHHcC--CCCcHHHHHHHHCc----CHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHH
Confidence 3455443 46788999999999 999999999999987 112222 468999998776
No 384
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=80.82 E-value=1 Score=31.31 Aligned_cols=61 Identities=11% Similarity=0.098 Sum_probs=47.9
Q ss_pred chHhHhcCCCCCCCHHHHHH-hCCCCCCCChhhHHHHHHHhccC--CCCCCCeEecChhhHHHHhcCCCcc
Q 045543 4 FEIMAKAGPRAKLSAAEIEA-QMPSHNPNAAVMLDRVLRRSLSS--AGDDRRLQRLAPVAKYVLHYGIGDY 71 (239)
Q Consensus 4 fd~L~~~g~~~~~t~~eLA~-~~g~~~~~~~~~l~rlL~~L~~~--~~~~~~~y~~t~~s~~l~~~g~~~~ 71 (239)
.-.|++. ++.|+.+||+ .+++ +...+.|=++.|... .+..++-..+|+.++.++..+.+.|
T Consensus 22 L~~L~~~---~~~t~~~Lae~~l~~----drstvsrnl~~L~r~GlVe~~~~Dl~LT~~G~~~l~~a~~~W 85 (95)
T 1bja_A 22 LITIAKK---DFITAAEVREVHPDL----GNAVVNSNIGVLIKKGLVEKSGDGLIITGEAQDIISNAATLY 85 (95)
T ss_dssp HHHHHHS---TTBCHHHHHHTCTTS----CHHHHHHHHHHHHTTTSEEEETTEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHC---CCCCHHHHHHHHhcc----cHHHHHHHHHHHHHCCCeecCCCCeeeCHhHHHHHHHHHHHH
Confidence 3456665 5999999999 9999 999999999999987 3332333999999998876666666
No 385
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=80.59 E-value=1.7 Score=34.52 Aligned_cols=145 Identities=11% Similarity=0.081 Sum_probs=81.7
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---CCCCCCeEecChhhHHHHhc---CCCcc-----cccccCchHHH
Q 045543 14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---AGDDRRLQRLAPVAKYVLHY---GIGDY-----EHAGLDSRFNE 82 (239)
Q Consensus 14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~~~~~~~y~~t~~s~~l~~~---g~~~~-----~~l~~~~~~~~ 82 (239)
++.|..+||+.+++ ++..+.+.++-|... .....+.+.+|+.++.+... ....| +.+.-+++...
T Consensus 19 ~~~~~~~lA~~l~v----s~~tvs~~l~~Le~~GlV~r~~~~~i~LT~~G~~~~~~~~~~h~~~e~~l~~~lg~~~~e~~ 94 (214)
T 3hrs_A 19 NKITNKEIAQLMQV----SPPAVTEMMKKLLAEELLIKDKKAGYLLTDLGLKLVSDLYRKHRLIEVFLVHHLGYTTEEIH 94 (214)
T ss_dssp SCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred CCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEEecCCCeEECHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 79999999999999 999999999999997 22234678999999876511 01111 12223445555
Q ss_pred HHHHHHHhccc-ccHHHHHhhccCCCC---c-ceEEEeCCCCCCCcc-ccc--cccCCcceeeechhhhcCChhHHHHHH
Q 045543 83 VLNTAMLSHNS-IVMNRILDYYKGFEK---I-KQLVDVGGGCGKCGW-KMF--QKILNGDAILMKLILRNWDDEHCLSLL 154 (239)
Q Consensus 83 ~f~~~m~~~~~-~~~~~~~~~~~~~~~---~-~~vlDvGGG~G~~~g-D~~--~~~p~~D~~~l~~vlH~~~d~~~~~iL 154 (239)
.....|...-. .....+.+.+. +.. . ..|= ...|.... +.. ..++.|+-+.+..|- ++. .++
T Consensus 95 ~~a~~lEh~~s~~~~~~l~~~l~-~p~~~Phg~~Ip---~~~~~~~~~~~~~L~~l~~G~~~~I~~i~----~~~--~~~ 164 (214)
T 3hrs_A 95 EEAEVLEHTVSDHFVERLDQLLD-YPKACPHGGTIP---AKGELLVEKHKLTLEEAKEKGDYILARVH----DNF--DLL 164 (214)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHTT-CCSBCTTSCBCC---CTTSCCCCSCCCBSTTCCSCEEEEEEEEC----CCH--HHH
T ss_pred HHHHHHhccCCHHHHHHHHHHhC-CCCCCcCcCCcC---CCCCCcccccccChhhcCCCCeEEEEEEe----CcH--HHH
Confidence 55555544322 23344444433 221 1 1111 11121111 111 134446666666663 222 566
Q ss_pred HHHHh-hCCCCceEEEEee
Q 045543 155 KNCYE-AIPGNGKIIIIDS 172 (239)
Q Consensus 155 ~~~~~-aL~pgg~lli~d~ 172 (239)
+++.+ -+.||..+-|...
T Consensus 165 ~~L~~~Gi~pG~~v~v~~~ 183 (214)
T 3hrs_A 165 TYLERNGLQVGKTIRFLGY 183 (214)
T ss_dssp HHHHTTTCCTTCEEEEEEE
T ss_pred HHHHHCCCCCCCEEEEEEe
Confidence 66665 4789988888754
No 386
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=80.47 E-value=1 Score=31.52 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=31.0
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
|...+...| .++|..|||+.+|+ +...+.+.|+.|...
T Consensus 23 Il~~l~~~g--~~~s~~eLa~~lgv----s~~tV~~~L~~L~~~ 60 (110)
T 1q1h_A 23 VLRILLDKG--TEMTDEEIANQLNI----KVNDVRKKLNLLEEQ 60 (110)
T ss_dssp HHHHHHHHC--SCBCHHHHHHTTTS----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence 455554322 48999999999999 999999999999886
No 387
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=80.08 E-value=1.8 Score=33.42 Aligned_cols=56 Identities=9% Similarity=0.113 Sum_probs=41.9
Q ss_pred chHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCC---CCeEecChhhHHHH
Q 045543 4 FEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDD---RRLQRLAPVAKYVL 64 (239)
Q Consensus 4 fd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~---~~~y~~t~~s~~l~ 64 (239)
...|...+ ++++|..+||+.+++ ++..+.++++.|... . .+. .-.+.+|+.++.++
T Consensus 47 L~~L~~~~-~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 111 (189)
T 3nqo_A 47 ILSILHLP-EEETTLNNIARKMGT----SKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVM 111 (189)
T ss_dssp HHHHHHSC-GGGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHH
T ss_pred HHHHHhcc-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHH
Confidence 34455321 268999999999999 999999999999986 1 111 23478999998776
No 388
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=79.92 E-value=1.7 Score=35.61 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=19.9
Q ss_pred HHHHHhhccCCCCcceEEEeCCCCCC
Q 045543 96 MNRILDYYKGFEKIKQLVDVGGGCGK 121 (239)
Q Consensus 96 ~~~~~~~~~~~~~~~~vlDvGGG~G~ 121 (239)
...+.+.+- +....+|||+||++|.
T Consensus 67 L~ei~ek~~-l~~g~~VvDLGaapGG 91 (267)
T 3p8z_A 67 LQWFVERNM-VIPEGRVIDLGCGRGG 91 (267)
T ss_dssp HHHHHHTTS-SCCCEEEEEESCTTSH
T ss_pred HHHHHHhcC-CCCCCEEEEcCCCCCc
Confidence 345666664 7777899999999999
No 389
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=79.73 E-value=5.1 Score=34.82 Aligned_cols=63 Identities=11% Similarity=0.021 Sum_probs=41.0
Q ss_pred CCCcceEEEeCCCCCC--------------------------------CccccccccC-Cc--ceeeechhhhcCChhHH
Q 045543 106 FEKIKQLVDVGGGCGK--------------------------------CGWKMFQKIL-NG--DAILMKLILRNWDDEHC 150 (239)
Q Consensus 106 ~~~~~~vlDvGGG~G~--------------------------------~~gD~~~~~p-~~--D~~~l~~vlH~~~d~~~ 150 (239)
+.+..++||+|+++|. +.+|.|+..| .+ |++++-.+. +....
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~---~p~~~ 285 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVE---KPAKV 285 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSS---CHHHH
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCC---ChHHh
Confidence 4567899999999999 5667776333 32 888776654 44555
Q ss_pred HHHHHHHHhhCCCCceEEEEe
Q 045543 151 LSLLKNCYEAIPGNGKIIIID 171 (239)
Q Consensus 151 ~~iL~~~~~aL~pgg~lli~d 171 (239)
..++.+.......++.|+.+.
T Consensus 286 ~~l~~~wl~~~~~~~aI~~lK 306 (375)
T 4auk_A 286 AALMAQWLVNGWCRETIFNLK 306 (375)
T ss_dssp HHHHHHHHHTTSCSEEEEEEE
T ss_pred HHHHHHHHhccccceEEEEEE
Confidence 566666555555555554444
No 390
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=79.51 E-value=1.6 Score=32.30 Aligned_cols=56 Identities=11% Similarity=0.160 Sum_probs=41.2
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C--C--CC---CCeEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A--G--DD---RRLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~--~--~~---~~~y~~t~~s~~l~ 64 (239)
|...|...+ +++|..+||+.+++ ++..+.++++.|... . . +. .-.+.+|+.++.+.
T Consensus 52 iL~~L~~~~--~~~~~~ela~~l~i----~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 116 (160)
T 3boq_A 52 AMAQLARNP--DGLSMGKLSGALKV----TNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTF 116 (160)
T ss_dssp HHHHHHHCT--TCEEHHHHHHHCSS----CCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHH
T ss_pred HHHHHHHcC--CCCCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHH
Confidence 445663222 68999999999999 999999999999886 1 1 11 22378999998766
No 391
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=79.30 E-value=1.8 Score=31.69 Aligned_cols=55 Identities=7% Similarity=0.097 Sum_probs=43.0
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC----C--C--CCCC---eEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS----A--G--DDRR---LQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~----~--~--~~~~---~y~~t~~s~~l~ 64 (239)
|...|... +++|..+||+.+++ ++..+.++++.|... . . +.++ .+.+|+.++.+.
T Consensus 46 iL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~ 111 (154)
T 2qww_A 46 MINVIYST---PGISVADLTKRLII----TGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLS 111 (154)
T ss_dssp HHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHH
T ss_pred HHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHH
Confidence 44556664 58999999999999 999999999999886 2 1 1222 488999998776
No 392
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=79.10 E-value=2 Score=31.85 Aligned_cols=37 Identities=11% Similarity=0.245 Sum_probs=31.8
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
|...|.+. +++|..|||+++|+ ++..+.+.++.|...
T Consensus 14 il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~ 50 (151)
T 2dbb_A 14 LVKILSEN---SRLTYRELADILNT----TRQRIARRIDKLKKL 50 (151)
T ss_dssp HHHHHHHC---TTCCHHHHHHHTTS----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence 55667764 68999999999999 999999999999765
No 393
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=79.03 E-value=1.6 Score=32.16 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=32.2
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
|.+.|.+. ++.|..|||+++|+ ++..+.+.++.|...
T Consensus 10 il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~ 46 (144)
T 2cfx_A 10 IIEELKKD---SRLSMRELGRKIKL----SPPSVTERVRQLESF 46 (144)
T ss_dssp HHHHHHHC---SCCCHHHHHHHHTC----CHHHHHHHHHHHHHT
T ss_pred HHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence 55677764 68999999999999 999999999999876
No 394
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=78.72 E-value=1.4 Score=31.98 Aligned_cols=54 Identities=9% Similarity=0.190 Sum_probs=41.7
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C--C--CCCC---eEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A--G--DDRR---LQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~--~--~~~~---~y~~t~~s~~l~ 64 (239)
|+..|... ++ |..+||+.+++ ++..+.++++.|... . . +.++ .+.+|+.++.+.
T Consensus 42 iL~~l~~~---~~-~~~~la~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 104 (144)
T 3f3x_A 42 ILKATSEE---PR-SMVYLANRYFV----TQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVL 104 (144)
T ss_dssp HHHHHHHS---CE-EHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHC---CC-CHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHH
Confidence 45566664 35 99999999999 999999999999987 1 1 1122 488999998776
No 395
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=78.68 E-value=2 Score=28.38 Aligned_cols=30 Identities=7% Similarity=0.082 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 13 RAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 13 ~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
++..|+.+||+++|+ +...+.|+|.-|...
T Consensus 27 ~~~~Ta~~IAkkLg~----sK~~vNr~LY~L~kk 56 (75)
T 1sfu_A 27 NDYTTAISLSNRLKI----NKKKINQQLYKLQKE 56 (75)
T ss_dssp TCEECHHHHHHHTTC----CHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHCC----CHHHHHHHHHHHHHC
Confidence 356999999999999 899999999888765
No 396
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=78.53 E-value=0.88 Score=31.41 Aligned_cols=43 Identities=7% Similarity=-0.009 Sum_probs=32.7
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---CCC--CCCeEecChhh
Q 045543 14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---AGD--DRRLQRLAPVA 60 (239)
Q Consensus 14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~~~--~~~~y~~t~~s 60 (239)
++.|+.|||+.+|+ ++..+.+.|+.|... .++ ..-.|++++..
T Consensus 40 ~~~~~~ela~~l~i----s~stvs~hL~~L~~~lv~~~~~gr~~~y~l~~~~ 87 (99)
T 2zkz_A 40 KALNVTQIIQILKL----PQSTVSQHLCKMRGKVLKRNRQGLEIYYSINNPK 87 (99)
T ss_dssp SCEEHHHHHHHHTC----CHHHHHHHHHHHBTTTBEEEEETTEEEEECCCHH
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHHhhhheEeCcEEEEEEChHH
Confidence 68999999999999 999999999999874 111 12247766543
No 397
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=78.18 E-value=1.5 Score=34.29 Aligned_cols=36 Identities=19% Similarity=0.029 Sum_probs=30.1
Q ss_pred hHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 5 EIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 5 d~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
+.+.+.| .|.|..|||+.+|+ +...+.+.|+.|...
T Consensus 16 ~~~~~~g--~~~s~~eia~~lgl----~~~tv~~~l~~Le~~ 51 (196)
T 3k2z_A 16 EFIEKNG--YPPSVREIARRFRI----TPRGALLHLIALEKK 51 (196)
T ss_dssp HHHHHHS--SCCCHHHHHHHHTS----CHHHHHHHHHHHHHT
T ss_pred HHHHHhC--CCCCHHHHHHHcCC----CcHHHHHHHHHHHHC
Confidence 3455544 68999999999999 888899999999886
No 398
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=78.01 E-value=2.6 Score=28.87 Aligned_cols=39 Identities=15% Similarity=0.319 Sum_probs=32.8
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
|+..|.++|. ..++..|||+++++ +...+.++|+.|...
T Consensus 25 Vl~~I~~~g~-~gi~qkeLa~~~~l----~~~tvt~iLk~LE~k 63 (91)
T 2dk5_A 25 VYQIIEDAGN-KGIWSRDVRYKSNL----PLTEINKILKNLESK 63 (91)
T ss_dssp HHHHHHHHCT-TCEEHHHHHHHTTC----CHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCC-CCcCHHHHHHHHCC----CHHHHHHHHHHHHHC
Confidence 5566776431 48999999999999 999999999999886
No 399
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=77.59 E-value=1.1 Score=32.64 Aligned_cols=55 Identities=13% Similarity=0.128 Sum_probs=41.5
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC----CC--C---CCCeEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS----AG--D---DRRLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~----~~--~---~~~~y~~t~~s~~l~ 64 (239)
|+..|... ++.|..+||+.+++ ++..+.++++.|... .. + ..-.+.+|+.++.+.
T Consensus 45 iL~~l~~~---~~~~~~~la~~l~~----~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~ 108 (147)
T 1z91_A 45 ALLLLWEH---ETLTVKKMGEQLYL----DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLK 108 (147)
T ss_dssp HHHHHHHH---SEEEHHHHHHTTTC----CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGG
T ss_pred HHHHHHHC---CCCCHHHHHHHHCC----CcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHH
Confidence 44556654 58999999999999 999999999999886 11 1 122378898887665
No 400
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=77.47 E-value=1.8 Score=31.99 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=32.1
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
|...|.+. ++.|..|||+++|+ ++..+.+.++.|...
T Consensus 12 iL~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~ 48 (150)
T 2w25_A 12 LVRELAAD---GRATLSELATRAGL----SVSAVQSRVRRLESR 48 (150)
T ss_dssp HHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHT
T ss_pred HHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence 45667764 68999999999999 999999999999876
No 401
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=76.96 E-value=1.9 Score=32.39 Aligned_cols=37 Identities=11% Similarity=0.271 Sum_probs=32.1
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
|...|.+. +++|..|||+++|+ ++..+.+.++.|...
T Consensus 15 il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~ 51 (162)
T 2p5v_A 15 ILQVLQEN---GRLTNVELSERVAL----SPSPCLRRLKQLEDA 51 (162)
T ss_dssp HHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHT
T ss_pred HHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence 45667764 68999999999999 999999999999876
No 402
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=76.64 E-value=2.7 Score=30.50 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=35.7
Q ss_pred CCCHHHHHHhCCCCCCCChhhHHHHHHHhccC----C--C-CC----CCeEecChhhHHHH
Q 045543 15 KLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS----A--G-DD----RRLQRLAPVAKYVL 64 (239)
Q Consensus 15 ~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~----~--~-~~----~~~y~~t~~s~~l~ 64 (239)
..|.++||+++++ ++..+.+.++.|... . . .+ ...|.++|+-..|.
T Consensus 51 ~ps~~~LA~~l~~----s~~~V~~~l~~Le~kGlI~~~~~~~~~g~~~~~Ydl~pl~~kL~ 107 (128)
T 2vn2_A 51 FPTPAELAERMTV----SAAECMEMVRRLLQKGMIAIEEHTDEQGIRNEKYTLEPLWEKLV 107 (128)
T ss_dssp SCCHHHHHHTSSS----CHHHHHHHHHHHHHTTSSEECC----------CEECHHHHHHHH
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEeEECCCCcEEEEEehHHHHHHHH
Confidence 3799999999999 999999999999986 1 1 11 14699999887664
No 403
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=76.45 E-value=2.1 Score=31.78 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=32.0
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
|...|.+. ++.|..|||+++|+ ++..+.+.++.|...
T Consensus 12 il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~ 48 (151)
T 2cyy_A 12 IIKILQND---GKAPLREISKITGL----AESTIHERIRKLRES 48 (151)
T ss_dssp HHHHHHHC---TTCCHHHHHHHHCS----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence 55677764 68999999999999 999999999999775
No 404
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=76.20 E-value=2.1 Score=31.81 Aligned_cols=37 Identities=14% Similarity=0.202 Sum_probs=31.9
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
|...|.+. ++.|..|||+++|+ ++..+.+.++.|...
T Consensus 13 il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~ 49 (152)
T 2cg4_A 13 ILEALMGN---ARTAYAELAKQFGV----SPETIHVRVEKMKQA 49 (152)
T ss_dssp HHHHHHHC---TTSCHHHHHHHHTS----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHc
Confidence 45667764 68999999999999 999999999999775
No 405
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=75.80 E-value=1.4 Score=33.55 Aligned_cols=58 Identities=16% Similarity=0.233 Sum_probs=41.1
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC----CC--CCC---CeEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS----AG--DDR---RLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~----~~--~~~---~~y~~t~~s~~l~ 64 (239)
|...|...++.+++|..|||+.+++ ++..+.++++.|... .. +.+ -.+.+|+.++.+.
T Consensus 74 iL~~L~~~~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~ 140 (181)
T 2fbk_A 74 LLLTLYRSAPPEGLRPTELSALAAI----SGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALV 140 (181)
T ss_dssp HHHHHHHHCCSSCBCHHHHHHHCSC----CSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 4455665431113999999999999 999999999999885 11 112 2478999988766
No 406
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=75.45 E-value=2.3 Score=31.44 Aligned_cols=47 Identities=17% Similarity=0.164 Sum_probs=33.8
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CC---CCCC---eEecChhhHHHH
Q 045543 14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AG---DDRR---LQRLAPVAKYVL 64 (239)
Q Consensus 14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~---~~~~---~y~~t~~s~~l~ 64 (239)
+++|..|||+.+++ ++..+.++++.|... .+ +.++ ...+|+.++.++
T Consensus 51 ~~~t~~eLa~~l~~----~~~tvsr~v~~Le~~glVr~~~~~DrR~~~v~LT~~G~~~~ 105 (148)
T 4fx0_A 51 IDLTMSELAARIGV----ERTTLTRNLEVMRRDGLVRVMAGADARCKRIELTAKGRAAL 105 (148)
T ss_dssp ---CHHHHHHHHTC----CHHHHHHHHHHHHHTTSBC-----------CCBCHHHHHHH
T ss_pred CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeeCCCCCCeeEEEECHHHHHHH
Confidence 57999999999999 999999999999886 11 1122 357888888765
No 407
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=75.37 E-value=1.4 Score=32.60 Aligned_cols=47 Identities=13% Similarity=0.222 Sum_probs=37.6
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC------CCCCCC---eEecChhhHHHH
Q 045543 14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS------AGDDRR---LQRLAPVAKYVL 64 (239)
Q Consensus 14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~------~~~~~~---~y~~t~~s~~l~ 64 (239)
+++|..+||+.+++ ++..+.++++-|... ..+.++ ...+|+.++.+.
T Consensus 50 ~~~t~~eLa~~l~~----~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 105 (147)
T 4b8x_A 50 GELPMSKIGERLMV----HPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVV 105 (147)
T ss_dssp GEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHH
Confidence 68999999999999 999999999999987 112222 367899998776
No 408
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=75.18 E-value=5.8 Score=36.19 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=17.1
Q ss_pred HHHHHHHhhCC-CCceEEEE
Q 045543 152 SLLKNCYEAIP-GNGKIIII 170 (239)
Q Consensus 152 ~iL~~~~~aL~-pgg~lli~ 170 (239)
..++++.+.|+ |||++.++
T Consensus 338 ~Fl~~~l~~Lk~~gGr~a~V 357 (542)
T 3lkd_A 338 AFLLHGYYHLKQDNGVMAIV 357 (542)
T ss_dssp HHHHHHHHTBCTTTCEEEEE
T ss_pred HHHHHHHHHhCCCceeEEEE
Confidence 58999999999 99999885
No 409
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=74.92 E-value=3.9 Score=27.96 Aligned_cols=29 Identities=3% Similarity=0.230 Sum_probs=26.1
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
.+.|+++||+.+|+ +++.+.|+++.....
T Consensus 18 ~~~~~~~lA~~~~~----S~~~l~r~fk~~~g~ 46 (103)
T 3lsg_A 18 SQFTLSVLSEKLDL----SSGYLSIMFKKNFGI 46 (103)
T ss_dssp TTCCHHHHHHHTTC----CHHHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHHCc
Confidence 48999999999999 999999999887665
No 410
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=74.74 E-value=1.5 Score=29.95 Aligned_cols=29 Identities=7% Similarity=0.227 Sum_probs=27.5
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
++.|..|||+.+|+ ++..+.+.|+.|...
T Consensus 35 ~~~t~~ela~~l~i----s~~tv~~~l~~L~~~ 63 (109)
T 2d1h_A 35 KPITSEELADIFKL----SKTTVENSLKKLIEL 63 (109)
T ss_dssp SCEEHHHHHHHHTC----CHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence 68999999999999 999999999999886
No 411
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=74.66 E-value=1.8 Score=36.45 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=20.7
Q ss_pred HHHHHhhccCCCCcceEEEeCCCCCC
Q 045543 96 MNRILDYYKGFEKIKQLVDVGGGCGK 121 (239)
Q Consensus 96 ~~~~~~~~~~~~~~~~vlDvGGG~G~ 121 (239)
...+++.++ ..+..++||+|||+|.
T Consensus 15 l~e~l~~L~-~~~g~~vLD~g~G~G~ 39 (301)
T 1m6y_A 15 VREVIEFLK-PEDEKIILDCTVGEGG 39 (301)
T ss_dssp HHHHHHHHC-CCTTCEEEETTCTTSH
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCcCH
Confidence 456677776 6777899999999999
No 412
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=74.47 E-value=2.2 Score=31.53 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=32.0
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
|...|.+. ++.|..|||+++|+ ++..+.+.++.|...
T Consensus 8 il~~L~~~---~~~~~~ela~~lg~----s~~tv~~~l~~L~~~ 44 (150)
T 2pn6_A 8 ILKILQYN---AKYSLDEIAREIRI----PKATLSYRIKKLEKD 44 (150)
T ss_dssp HHHHHTTC---TTSCHHHHHHHHTS----CHHHHHHHHHHHHHT
T ss_pred HHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence 45667653 68999999999999 999999999999886
No 413
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=74.05 E-value=2.3 Score=32.11 Aligned_cols=37 Identities=11% Similarity=0.228 Sum_probs=31.8
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
|.+.|.+. +++|..|||+++|+ ++..+.+-++.|...
T Consensus 8 il~~L~~~---~~~s~~~la~~lg~----s~~tv~~rl~~L~~~ 44 (162)
T 3i4p_A 8 ILRILQED---STLAVADLAKKVGL----STTPCWRRIQKMEED 44 (162)
T ss_dssp HHHHHTTC---SCSCHHHHHHHHTC----CHHHHHHHHHHHHHT
T ss_pred HHHHHHHC---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence 55667664 69999999999999 999999999999776
No 414
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=73.96 E-value=2.7 Score=23.93 Aligned_cols=25 Identities=12% Similarity=0.200 Sum_probs=21.8
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHH
Q 045543 14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRR 42 (239)
Q Consensus 14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~ 42 (239)
...|..+||+.+|+ +...+.++++.
T Consensus 20 ~g~s~~~IA~~lgi----s~~Tv~~~~~~ 44 (51)
T 1tc3_C 20 LNVSLHEMSRKISR----SRHCIRVYLKD 44 (51)
T ss_dssp TTCCHHHHHHHHTC----CHHHHHHHHHC
T ss_pred cCCCHHHHHHHHCc----CHHHHHHHHhh
Confidence 36899999999999 99999988864
No 415
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=73.90 E-value=2.7 Score=33.04 Aligned_cols=55 Identities=11% Similarity=-0.043 Sum_probs=41.8
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCC---CCeEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDD---RRLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~---~~~y~~t~~s~~l~ 64 (239)
|...|... +++|..+||+.+++ ++..+.++++.|... . .+. .-.+.+|+.++.+.
T Consensus 53 iL~~L~~~---~~~t~~eLa~~l~i----~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 116 (207)
T 2fxa_A 53 ILWIAYQL---NGASISEIAKFGVM----HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVF 116 (207)
T ss_dssp HHHHHHHH---TSEEHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHH
T ss_pred HHHHHHHC---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHH
Confidence 34456554 58999999999999 999999999999886 1 111 22578999998776
No 416
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=73.58 E-value=4.6 Score=27.85 Aligned_cols=38 Identities=11% Similarity=0.205 Sum_probs=29.3
Q ss_pred hHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 5 EIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 5 d~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
+.|.++-.+.++|+++||+.+|+ +++.+.|+++.....
T Consensus 10 ~~i~~~~~~~~~~~~~lA~~~~~----S~~~l~r~fk~~~G~ 47 (107)
T 2k9s_A 10 QYISDHLADSNFDIASVAQHVCL----SPSRLSHLFRQQLGI 47 (107)
T ss_dssp HHHHHTSSCSSCCHHHHHHHTTS----CHHHHHHHHHHHHSS
T ss_pred HHHHHHhccCCCCHHHHHHHHCC----CHHHHHHHHHHHHCc
Confidence 44444321258999999999999 999999999876654
No 417
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=73.11 E-value=2.7 Score=32.06 Aligned_cols=37 Identities=14% Similarity=0.337 Sum_probs=32.0
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
|...|.+. +++|..|||+++|+ ++..+.+.++.|...
T Consensus 22 IL~~L~~~---~~~s~~eLA~~lgl----S~~tv~~~l~~L~~~ 58 (171)
T 2ia0_A 22 ILRLLKKD---ARLTISELSEQLKK----PESTIHFRIKKLQER 58 (171)
T ss_dssp HHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHT
T ss_pred HHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence 55667764 68999999999999 999999999999776
No 418
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=72.76 E-value=2.9 Score=30.33 Aligned_cols=37 Identities=16% Similarity=0.280 Sum_probs=31.6
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
|...|.+. +++|..|||+++|+ ++..+.+.++.|...
T Consensus 9 il~~L~~~---~~~~~~ela~~lg~----s~~tv~~~l~~L~~~ 45 (141)
T 1i1g_A 9 ILEILEKD---ARTPFTEIAKKLGI----SETAVRKRVKALEEK 45 (141)
T ss_dssp HHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence 45667653 68999999999999 999999999999876
No 419
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=72.60 E-value=3.2 Score=25.90 Aligned_cols=49 Identities=16% Similarity=0.204 Sum_probs=37.5
Q ss_pred hHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CCCCCCeEecChh
Q 045543 5 EIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AGDDRRLQRLAPV 59 (239)
Q Consensus 5 d~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~~~~~~y~~t~~ 59 (239)
..|++.. +.+|+.|+|+..+. +-+..+.-|..|.+. ..+...+|++.|.
T Consensus 10 all~s~~--QGMTaGEVAA~f~w----~Le~ar~aLeqLf~~G~LRKRsSRYrlkph 60 (68)
T 3i71_A 10 ALLTSVR--QGMTAGEVAAHFGW----PLEKARNALEQLFSAGTLRKRSSRYRLKPH 60 (68)
T ss_dssp HHHHHCT--TCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCEEEECC-
T ss_pred HHHHHHh--ccccHHHHHHHhCC----cHHHHHHHHHHHHhcchhhhhccccccCcc
Confidence 3455543 78999999999999 888888778877776 5667788987764
No 420
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=71.92 E-value=3 Score=31.83 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=32.1
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
|...|.+. +++|..|||+++|+ ++..+.+-|+.|...
T Consensus 32 IL~~L~~~---~~~s~~eLA~~lgl----S~~tv~~rl~~L~~~ 68 (171)
T 2e1c_A 32 IIKILQND---GKAPLREISKITGL----AESTIHERIRKLRES 68 (171)
T ss_dssp HHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHT
T ss_pred HHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence 55667764 68999999999999 999999999999876
No 421
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=71.76 E-value=8.2 Score=37.18 Aligned_cols=20 Identities=20% Similarity=0.125 Sum_probs=17.0
Q ss_pred HHHHHHHHhhCCCCceEEEE
Q 045543 151 LSLLKNCYEAIPGNGKIIII 170 (239)
Q Consensus 151 ~~iL~~~~~aL~pgg~lli~ 170 (239)
..+++++.+.|+|||++.++
T Consensus 445 ~aFIe~Al~lLKpGGrLAfI 464 (878)
T 3s1s_A 445 ALFLELVTELVQDGTVISAI 464 (878)
T ss_dssp HHHHHHHHHHSCTTCEEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEE
Confidence 45788899999999999885
No 422
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=71.70 E-value=3.6 Score=30.03 Aligned_cols=54 Identities=13% Similarity=0.291 Sum_probs=40.3
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC----C----CCCCC---eEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS----A----GDDRR---LQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~----~----~~~~~---~y~~t~~s~~l~ 64 (239)
|...| .. +++|..|||+.+++ ++..+.++++.|... . .+.++ .+.+|+.++.+.
T Consensus 43 iL~~l-~~---~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~ 107 (151)
T 3kp7_A 43 VLNML-SI---EALTVGQITEKQGV----NKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYI 107 (151)
T ss_dssp HHHHH-HH---SCBCHHHHHHHHCS----CSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHH
T ss_pred HHHHH-Hc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHH
Confidence 34455 43 69999999999999 999999999999987 1 11222 367899988776
No 423
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=71.30 E-value=3 Score=30.73 Aligned_cols=38 Identities=16% Similarity=0.137 Sum_probs=32.2
Q ss_pred cchHhHhcCCCCCCCHHHHHHhC-----CCCCCCChhhHHHHHHHhccC
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQM-----PSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~-----g~~~~~~~~~l~rlL~~L~~~ 46 (239)
|++.|.+++ ++.|++||.+.+ ++ +..-++|.|+.|+..
T Consensus 19 Il~~L~~~~--~h~sa~eI~~~l~~~~~~i----s~aTVYR~L~~L~e~ 61 (139)
T 3mwm_A 19 VSAALQEVE--EFRSAQELHDMLKHKGDAV----GLTTVYRTLQSLADA 61 (139)
T ss_dssp HHHHHTTCS--SCEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHT
T ss_pred HHHHHHhCC--CCCCHHHHHHHHHHhCCCC----CHHHHHHHHHHHHHC
Confidence 567777643 699999999998 56 899999999999997
No 424
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=70.57 E-value=2.8 Score=30.25 Aligned_cols=29 Identities=10% Similarity=0.106 Sum_probs=27.7
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
+++|..|||+.+|+ ++..+.++|+.|...
T Consensus 40 ~~~t~~ela~~l~~----~~stvs~~l~~L~~~ 68 (152)
T 1ku9_A 40 KPLTISDIMEELKI----SKGNVSMSLKKLEEL 68 (152)
T ss_dssp SCEEHHHHHHHHTC----CHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence 68999999999999 999999999999987
No 425
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=70.56 E-value=2.1 Score=34.26 Aligned_cols=58 Identities=12% Similarity=0.151 Sum_probs=43.9
Q ss_pred cchHhHhcCC---CCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CCCC----CCeEecChhhHHHH
Q 045543 3 VFEIMAKAGP---RAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AGDD----RRLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~---~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~~~----~~~y~~t~~s~~l~ 64 (239)
+|..|+..|. .++.|..++|+++++ ++..+.+.++.|... .+.. ...+.+|+.++.+.
T Consensus 12 ~l~~l~~~~~l~~~~~~s~s~aA~~L~i----sq~avSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G~~l~ 78 (230)
T 3cta_A 12 AIKKIKEAAEASNRAYLTSSKLADMLGI----SQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVL 78 (230)
T ss_dssp HHHHHHHHTTTSSEEECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHhcccccCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEEEcCCeEEEEECHHHHHHH
Confidence 4555554320 135889999999999 999999999999886 2222 56789999998876
No 426
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=70.34 E-value=4.6 Score=24.85 Aligned_cols=29 Identities=7% Similarity=0.040 Sum_probs=25.4
Q ss_pred CCCCHHHHHHhC-----CCCCCCChhhHHHHHHHhccC
Q 045543 14 AKLSAAEIEAQM-----PSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 14 ~~~t~~eLA~~~-----g~~~~~~~~~l~rlL~~L~~~ 46 (239)
++.|++||++.+ ++ +...++|-|+.+...
T Consensus 18 ~~~t~~el~~~l~~~~~~v----s~~Tv~R~L~~lg~v 51 (64)
T 2p5k_A 18 EIETQDELVDMLKQDGYKV----TQATVSRDIKELHLV 51 (64)
T ss_dssp CCCSHHHHHHHHHHTTCCC----CHHHHHHHHHHHTCE
T ss_pred CCCCHHHHHHHHHHhCCCc----CHHHHHHHHHHcCCE
Confidence 699999999999 99 999999999966443
No 427
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=70.14 E-value=1.8 Score=30.17 Aligned_cols=41 Identities=20% Similarity=0.253 Sum_probs=31.1
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
|...|.+. +++|+.||+++++.....++..+.++|+-|...
T Consensus 40 VL~~L~~~---~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~K 80 (99)
T 2k4b_A 40 VMRVIWSL---GEARVDEIYAQIPQELEWSLATVKTLLGRLVKK 80 (99)
T ss_dssp HHHHHHHH---SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhC---CCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHC
Confidence 45666654 699999999999851011578899999999987
No 428
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=69.90 E-value=2.7 Score=30.37 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=29.7
Q ss_pred ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhcc
Q 045543 2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLS 45 (239)
Q Consensus 2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~ 45 (239)
.|+..|.+ ..|..|||+++|+ ++.-+.|+-+.|-.
T Consensus 67 eV~klL~~-----G~syreIA~~~g~----S~aTIsRv~r~L~~ 101 (119)
T 3kor_A 67 QVAKMIKQ-----GYTYATIEQESGA----STATISRVKRSLQW 101 (119)
T ss_dssp HHHHHHHH-----TCCHHHHHHHHCC----CHHHHHHHHHHHHS
T ss_pred HHHHHHHc-----CCCHHHHHHHHCC----CHHHHHHHHHHHhc
Confidence 35677777 4999999999999 99999999888854
No 429
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=69.21 E-value=2.3 Score=26.46 Aligned_cols=38 Identities=8% Similarity=0.120 Sum_probs=32.8
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
|.+.|.++| |-+.++..|++.|+ +.+-+..+|+.|...
T Consensus 15 lL~yIr~sG--GildI~~~a~kygV----~kdeV~~~LrrLe~K 52 (59)
T 2xvc_A 15 LLDYIVNNG--GFLDIEHFSKVYGV----EKQEVVKLLEALKNK 52 (59)
T ss_dssp HHHHHHHTT--SEEEHHHHHHHHCC----CHHHHHHHHHHHHHT
T ss_pred HHHHHHHcC--CEEeHHHHHHHhCC----CHHHHHHHHHHHHHC
Confidence 556777776 89999999999999 999999999988753
No 430
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=68.80 E-value=3.7 Score=30.61 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=32.8
Q ss_pred cchHhHhcCCCCCCCHHHHHHhC-----CCCCCCChhhHHHHHHHhccC
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQM-----PSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~-----g~~~~~~~~~l~rlL~~L~~~ 46 (239)
|++.|.+++ ++.|++||.+.+ ++ +...++|.|+.|+..
T Consensus 32 IL~~l~~~~--~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~ 74 (150)
T 2xig_A 32 VVSVLYRSG--THLSPEEITHSIRQKDKNT----SISSVYRILNFLEKE 74 (150)
T ss_dssp HHHHHHHCS--SCBCHHHHHHHHHHHSTTC----CHHHHHHHHHHHHHT
T ss_pred HHHHHHhCC--CCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHC
Confidence 567777643 699999999998 67 899999999999997
No 431
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=68.01 E-value=2.8 Score=31.34 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=39.1
Q ss_pred chHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCCCC---eEecChhhHHHH
Q 045543 4 FEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDDRR---LQRLAPVAKYVL 64 (239)
Q Consensus 4 fd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~~~---~y~~t~~s~~l~ 64 (239)
...|...| ++++|..+||+.+++ ++..+.++++.|... . .+.++ .+.+|+.++.++
T Consensus 52 L~~l~~~~-~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 116 (168)
T 3u2r_A 52 LRLLRSVH-PEGMATLQIADRLIS----RAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLL 116 (168)
T ss_dssp HHHHHHHT-TSCEEHHHHHHHC-------CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHhcC-CCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHH
Confidence 34555532 158999999999999 999999999999987 1 12222 468999988776
No 432
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=67.58 E-value=3.4 Score=32.28 Aligned_cols=36 Identities=0% Similarity=0.206 Sum_probs=31.3
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
|...|.+ +++|..|||+.+|+ ++..+.+.++.|...
T Consensus 25 IL~~L~~----~~~s~~eLA~~lgl----S~stv~~~l~~Le~~ 60 (192)
T 1uly_A 25 ILKLLRN----KEMTISQLSEILGK----TPQTIYHHIEKLKEA 60 (192)
T ss_dssp HHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHT
T ss_pred HHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence 4556664 69999999999999 999999999999886
No 433
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=67.56 E-value=3.9 Score=31.56 Aligned_cols=50 Identities=14% Similarity=0.130 Sum_probs=36.2
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---CCCCCCeEecCh
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---AGDDRRLQRLAP 58 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~~~~~~~y~~t~ 58 (239)
|.+.|.+.+ +++|+.|||+++|+ +.+.+.|=++.|... .....+.|..++
T Consensus 26 Il~~L~~~~--~~~s~~eLa~~l~v----S~~Ti~rdi~~L~~~G~~I~~~~~Gy~l~~ 78 (187)
T 1j5y_A 26 IVRILERSK--EPVSGAQLAEELSV----SRQVIVQDIAYLRSLGYNIVATPRGYVLAG 78 (187)
T ss_dssp HHHHHHHCS--SCBCHHHHHHHHTS----CHHHHHHHHHHHHHHTCCCEEETTEEECCT
T ss_pred HHHHHHHcC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEECCEEEECC
Confidence 456676533 57999999999999 999999999888764 111235566554
No 434
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=67.29 E-value=3.9 Score=23.60 Aligned_cols=23 Identities=9% Similarity=0.024 Sum_probs=20.4
Q ss_pred CCCHHHHHHhCCCCCCCChhhHHHHHH
Q 045543 15 KLSAAEIEAQMPSHNPNAAVMLDRVLR 41 (239)
Q Consensus 15 ~~t~~eLA~~~g~~~~~~~~~l~rlL~ 41 (239)
..|..+||+.+|+ +...+.++++
T Consensus 21 g~s~~~ia~~lgv----s~~Tv~r~l~ 43 (52)
T 1jko_C 21 GHPRQQLAIIFGI----GVSTLYRYFP 43 (52)
T ss_dssp TCCHHHHHHTTSC----CHHHHHHHSC
T ss_pred CCCHHHHHHHHCC----CHHHHHHHHH
Confidence 4899999999999 9998888764
No 435
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=65.96 E-value=2.6 Score=34.60 Aligned_cols=27 Identities=11% Similarity=-0.015 Sum_probs=18.1
Q ss_pred HHHHhhCCCceeeEEEcCCceeEEEEE
Q 045543 212 MALTAKNGFKGVNYESFVCNFYIMEFI 238 (239)
Q Consensus 212 ~~ll~~aGf~~~~~~~~~~~~~vie~~ 238 (239)
++.|.++||++.++...+....++.++
T Consensus 219 rr~L~~aGF~v~~~~g~~~kr~m~~a~ 245 (257)
T 2qy6_A 219 RRGLQEAGFTMQKRKGFGRKREMLCGV 245 (257)
T ss_dssp HHHHHHHTEEEEEECCSTTCCCEEEEE
T ss_pred HHHHHHCCCEEEeCCCCCCCCceEEEE
Confidence 888889999977665444444455544
No 436
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=65.68 E-value=4.9 Score=32.22 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=31.2
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
|+..|++ | .|.|.++||+.+|. +.+.+.+.|..+...
T Consensus 27 llr~la~-G--rpv~~~~LA~~~g~----~~~~v~~~L~~l~~~ 63 (220)
T 3f2g_A 27 LLRELAK-G--RPVSRTTLAGILDW----PAERVAAVLEQATST 63 (220)
T ss_dssp HHHHHTT-T--SCBCHHHHHHHHTC----CHHHHHHHHHHCTTC
T ss_pred HHHHHhc-C--CCCCHHHHHHHhCc----CHHHHHHHHHhCCcE
Confidence 3455664 4 89999999999999 999999999988866
No 437
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=65.17 E-value=5.8 Score=27.30 Aligned_cols=29 Identities=10% Similarity=0.088 Sum_probs=26.1
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
.++|+++||+.+|+ ++..+.|+++.....
T Consensus 17 ~~~~~~~lA~~~~~----s~~~l~r~fk~~~G~ 45 (108)
T 3mn2_A 17 RPITIEKLTALTGI----SSRGIFKAFQRSRGY 45 (108)
T ss_dssp SCCCHHHHHHHHTC----CHHHHHHHHHHHTSS
T ss_pred CCCCHHHHHHHHCC----CHHHHHHHHHHHhCc
Confidence 58999999999999 999999999877665
No 438
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.82 E-value=3.3 Score=28.63 Aligned_cols=39 Identities=15% Similarity=0.319 Sum_probs=33.3
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
|+..|.++|. ..++..+|+.++++ +...+.++|+.|...
T Consensus 42 Vy~~I~~aGn-~GIw~kdL~~~tnL----~~~~vtkiLK~LE~k 80 (95)
T 2yu3_A 42 VYQIIEDAGN-KGIWSRDVRYKSNL----PLTEINKILKNLESK 80 (95)
T ss_dssp HHHHHHHHTT-SCEEHHHHHHHHTC----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CCCCHHHHHHHhCC----CHHHHHHHHHHHHhC
Confidence 5667777653 67999999999999 999999999999874
No 439
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=64.75 E-value=2.7 Score=27.59 Aligned_cols=37 Identities=14% Similarity=0.295 Sum_probs=31.0
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCC----CCCCCChhhHHHHHHHhccC
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMP----SHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g----~~~~~~~~~l~rlL~~L~~~ 46 (239)
|.+.|.+. ++.|+.||++.++ + ++..+.++|+.|...
T Consensus 14 vL~~L~~~---~~~t~~ei~~~l~~~~~~----s~~Tv~~~l~rL~~k 54 (82)
T 1p6r_A 14 VMKVIWKH---SSINTNEVIKELSKTSTW----SPKTIQTMLLRLIKK 54 (82)
T ss_dssp HHHHHHTS---SSEEHHHHHHHHHHHSCC----CHHHHHHHHHHHHHT
T ss_pred HHHHHHcC---CCCCHHHHHHHHhhcCCc----cHHHHHHHHHHHHHC
Confidence 45666653 6999999999997 6 789999999999987
No 440
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=64.23 E-value=3.9 Score=32.69 Aligned_cols=46 Identities=11% Similarity=0.145 Sum_probs=37.4
Q ss_pred CCCH--HHHHHhCCCCCCCChhhHHHHHHHhccC---CCCCCCeEecChhhHHHH
Q 045543 15 KLSA--AEIEAQMPSHNPNAAVMLDRVLRRSLSS---AGDDRRLQRLAPVAKYVL 64 (239)
Q Consensus 15 ~~t~--~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~~~~~~~y~~t~~s~~l~ 64 (239)
+.|. .+||+++++ ++..+.++|+.|... ....+..+.+|+.++.+.
T Consensus 22 ~~~~~~~~La~~l~v----s~~tvs~~l~~Le~~GlV~r~~~~~v~LT~~G~~~~ 72 (230)
T 1fx7_A 22 GVTPLRARIAERLDQ----SGPTVSQTVSRMERDGLLRVAGDRHLELTEKGRALA 72 (230)
T ss_dssp TSCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHH
T ss_pred CCCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeCCccEEECHHHHHHH
Confidence 4555 999999999 999999999999997 222345789999998765
No 441
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=64.19 E-value=6.5 Score=23.81 Aligned_cols=27 Identities=4% Similarity=0.027 Sum_probs=21.8
Q ss_pred CCCHHHHHHhCCCCCCCChhhHHHHHHHhcc
Q 045543 15 KLSAAEIEAQMPSHNPNAAVMLDRVLRRSLS 45 (239)
Q Consensus 15 ~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~ 45 (239)
..|.+|||+.+|+ ++..+...++.+..
T Consensus 13 g~s~~eIA~~l~i----s~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 13 GYTNHGISEKLHI----SIKTVETHRMNMMR 39 (61)
T ss_dssp SCCSHHHHHHTCS----CHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC----CHHHHHHHHHHHHH
Confidence 7899999999999 88888766655433
No 442
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=64.19 E-value=4.9 Score=29.53 Aligned_cols=47 Identities=13% Similarity=0.055 Sum_probs=37.5
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC----C--C-CC----CCeEecChhhHHHH
Q 045543 14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS----A--G-DD----RRLQRLAPVAKYVL 64 (239)
Q Consensus 14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~----~--~-~~----~~~y~~t~~s~~l~ 64 (239)
...|.++||+++|+ ++..+.++|+.|... . . .. ...|.++|+-..|.
T Consensus 50 ~~ps~~~LA~~~~~----s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL~pL~ekL~ 107 (135)
T 2v79_A 50 YFPTPNQLQEGMSI----SVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQPLWGKLY 107 (135)
T ss_dssp CSCCHHHHHTTSSS----CHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEECHHHHHHHH
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeHHHHHHHHH
Confidence 35799999999999 999999999999885 1 1 11 24799999987665
No 443
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=64.14 E-value=3.9 Score=29.23 Aligned_cols=83 Identities=6% Similarity=-0.015 Sum_probs=51.6
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---CCCCCCeEecChhhHHHHhcCCCcccccccCch-HHHHHHHHHH
Q 045543 14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---AGDDRRLQRLAPVAKYVLHYGIGDYEHAGLDSR-FNEVLNTAML 89 (239)
Q Consensus 14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~~~~~~~y~~t~~s~~l~~~g~~~~~~l~~~~~-~~~~f~~~m~ 89 (239)
.|.++.+||+.+++ ++..+..+|+.|+.. .....+.|.++..-..+.. -+-+++.+++. ....|....
T Consensus 19 ~p~~~~~la~~~~~----~~~~~~~~l~~l~~~G~l~~i~~~~~~~~~~~~~~~~---~l~~~~~~~~~it~ae~Rd~l- 90 (121)
T 2pjp_A 19 EPWWVRDLAKETGT----DEQAMRLTLRQAAQQGIITAIVKDRYYRNDRIVEFAN---MIRDLDQECGSTCAADFRDRL- 90 (121)
T ss_dssp SCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHH---HHHHHHHHHSSEEHHHHHHHH-
T ss_pred CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEecCCceECHHHHHHHHH---HHHHHHHHCCCccHHHHHHHH-
Confidence 47799999999999 999999999999987 3344677777666544330 11122222211 123344443
Q ss_pred hcccccHHHHHhhcc
Q 045543 90 SHNSIVMNRILDYYK 104 (239)
Q Consensus 90 ~~~~~~~~~~~~~~~ 104 (239)
+.|+-.+-.+++.+|
T Consensus 91 g~sRK~ai~lLE~~D 105 (121)
T 2pjp_A 91 GVGRKLAIQILEYFD 105 (121)
T ss_dssp TSCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHh
Confidence 455555556777776
No 444
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=63.21 E-value=1.9 Score=37.79 Aligned_cols=21 Identities=5% Similarity=0.222 Sum_probs=16.9
Q ss_pred HHHHHHHHhhCCCCceEEEEe
Q 045543 151 LSLLKNCYEAIPGNGKIIIID 171 (239)
Q Consensus 151 ~~iL~~~~~aL~pgg~lli~d 171 (239)
..+++.+.+.|+|||.|++.-
T Consensus 138 ~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 138 VPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEEe
Confidence 368999999999999776643
No 445
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=62.95 E-value=6.5 Score=27.34 Aligned_cols=37 Identities=19% Similarity=0.299 Sum_probs=29.3
Q ss_pred hHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 5 EIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 5 d~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
+.|.++ ...++|+++||+.+|+ ++..+.|+++.....
T Consensus 14 ~~i~~~-~~~~~~~~~lA~~~~~----S~~~l~r~fk~~~G~ 50 (113)
T 3oio_A 14 SLMEAN-IEEPLSTDDIAYYVGV----SRRQLERLFKQYLGT 50 (113)
T ss_dssp HHHHTC-SSSCCCHHHHHHHHTS----CHHHHHHHHHHHTSS
T ss_pred HHHHhh-hcCCCCHHHHHHHHCc----CHHHHHHHHHHHHCc
Confidence 444443 2257999999999999 999999999887665
No 446
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=62.87 E-value=5 Score=25.47 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=19.4
Q ss_pred CCHHHHHHhCCCCCCCChhhHHHHHH
Q 045543 16 LSAAEIEAQMPSHNPNAAVMLDRVLR 41 (239)
Q Consensus 16 ~t~~eLA~~~g~~~~~~~~~l~rlL~ 41 (239)
+|..|||+++|+ ++..+.++|+
T Consensus 1 ~T~~diA~~aGV----S~sTVSrvLn 22 (65)
T 1uxc_A 1 MKLDEIARLAGV----SRTTASYVIN 22 (65)
T ss_dssp CCHHHHHHHHTS----CHHHHHHHHH
T ss_pred CCHHHHHHHHCc----CHHHHHHHHc
Confidence 478999999999 8999999885
No 447
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=62.86 E-value=8.5 Score=27.19 Aligned_cols=54 Identities=20% Similarity=0.273 Sum_probs=41.1
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCC--------CCCCCCh-hhHHHHHHHhccC-------CC---CCCCeEecChhhHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMP--------SHNPNAA-VMLDRVLRRSLSS-------AG---DDRRLQRLAPVAKYV 63 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g--------~~~~~~~-~~l~rlL~~L~~~-------~~---~~~~~y~~t~~s~~l 63 (239)
|...|.+ +|.+.-||++.+. + ++ ..+.+.|+-|... .. +..-.|.+|+.++.+
T Consensus 18 IL~~L~~----~~~~gyel~~~l~~~g~~~~~i----s~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G~~~ 89 (118)
T 2esh_A 18 ILLLVAE----KPSHGYELAERLAEFGIEIPGI----GHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLY 89 (118)
T ss_dssp HHHHHHH----SCBCHHHHHHHHHTTCCSSTTC----CCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHH
T ss_pred HHHHHHc----CCCCHHHHHHHHHHhCCcccCC----CCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEChHHHHH
Confidence 4456766 6999999999983 7 88 9999999999886 11 112358999999876
Q ss_pred H
Q 045543 64 L 64 (239)
Q Consensus 64 ~ 64 (239)
+
T Consensus 90 l 90 (118)
T 2esh_A 90 L 90 (118)
T ss_dssp H
T ss_pred H
Confidence 5
No 448
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=62.76 E-value=5.1 Score=33.94 Aligned_cols=24 Identities=13% Similarity=0.061 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHhhCCCCceEEEE
Q 045543 147 DEHCLSLLKNCYEAIPGNGKIIII 170 (239)
Q Consensus 147 d~~~~~iL~~~~~aL~pgg~lli~ 170 (239)
..-|..+|.=+.+.|+|||.+++-
T Consensus 193 ~~L~ElALdfA~~~LkpGGsFvVK 216 (344)
T 3r24_A 193 EGFFTYLCGFIKQKLALGGSIAVK 216 (344)
T ss_dssp CTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCcCCCEEEEE
Confidence 345778888888899999988774
No 449
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=62.71 E-value=3.1 Score=34.02 Aligned_cols=16 Identities=19% Similarity=0.302 Sum_probs=13.9
Q ss_pred CCCcceEEEeCCCCCC
Q 045543 106 FEKIKQLVDVGGGCGK 121 (239)
Q Consensus 106 ~~~~~~vlDvGGG~G~ 121 (239)
.....+|||+|||+|.
T Consensus 81 ~~~~~~VLDlgcG~G~ 96 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGR 96 (258)
T ss_dssp GGGCCCEEETTCTTCH
T ss_pred cCCcCeEEEeeCccCH
Confidence 5556799999999999
No 450
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=62.56 E-value=6.5 Score=27.08 Aligned_cols=29 Identities=14% Similarity=0.300 Sum_probs=26.3
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
.++|+++||+.+|+ ++..+.|+++.....
T Consensus 20 ~~~~~~~lA~~~~~----S~~~l~r~fk~~~G~ 48 (108)
T 3oou_A 20 EGMSLKTLGNDFHI----NAVYLGQLFQKEMGE 48 (108)
T ss_dssp SCCCHHHHHHHHTS----CHHHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHHCc
Confidence 58999999999999 999999999887665
No 451
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=62.48 E-value=6.3 Score=27.79 Aligned_cols=28 Identities=18% Similarity=0.048 Sum_probs=24.6
Q ss_pred CCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 15 KLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 15 ~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
..|+.|||+++++ ++..+-|+.+.|--.
T Consensus 39 ~~si~elA~~~~v----S~aTv~Rf~kklG~~ 66 (111)
T 2o3f_A 39 ESTVNEISALANS----SDAAVIRLCXSLGLK 66 (111)
T ss_dssp TCCHHHHHHHTTC----CHHHHHHHHHHTTCS
T ss_pred hcCHHHHHHHHCC----CHHHHHHHHHHcCCC
Confidence 5799999999999 999999999887543
No 452
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=62.33 E-value=4.9 Score=23.93 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=21.0
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHH
Q 045543 14 AKLSAAEIEAQMPSHNPNAAVMLDRVLR 41 (239)
Q Consensus 14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~ 41 (239)
...|..|||+.+|+ ++..+.+.++
T Consensus 30 ~g~s~~eIA~~lgi----s~~TV~~~l~ 53 (55)
T 2x48_A 30 MGYTVQQIANALGV----SERKVRRYLE 53 (55)
T ss_dssp TTCCHHHHHHHHTS----CHHHHHHHHT
T ss_pred cCCCHHHHHHHHCc----CHHHHHHHHH
Confidence 36799999999999 9999888774
No 453
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=62.12 E-value=9.3 Score=27.14 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=41.1
Q ss_pred chHhHhcCCCCCCCHHHHHHhC------CCCCCCChhhHHHHHHHhccC------C-C----CCCCeEecChhhHHHH
Q 045543 4 FEIMAKAGPRAKLSAAEIEAQM------PSHNPNAAVMLDRVLRRSLSS------A-G----DDRRLQRLAPVAKYVL 64 (239)
Q Consensus 4 fd~L~~~g~~~~~t~~eLA~~~------g~~~~~~~~~l~rlL~~L~~~------~-~----~~~~~y~~t~~s~~l~ 64 (239)
.-.|.+ +|.+.-||++.+ ++ ++..+...|+-|... . + +..-.|++|+.++..+
T Consensus 17 L~lL~~----~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l 86 (117)
T 4esf_A 17 LEIISR----RETYGYEITRHLNDLGFTEV----VEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAGRQEL 86 (117)
T ss_dssp HHHHHH----SCBCHHHHHHHHHHHTCTTC----CHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHHHHHH
T ss_pred HHHHHc----CCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHHHHHH
Confidence 345666 799999999998 78 999999999999886 1 1 1123599999998765
No 454
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=61.73 E-value=7.8 Score=28.17 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=31.6
Q ss_pred cchHhHhcCCCCCCCHHHHHHhC-----CCCCCCChhhHHHHHHHhccC
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQM-----PSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~-----g~~~~~~~~~l~rlL~~L~~~ 46 (239)
|++.|.+++ +++.|++||.+.+ ++ +...++|.|+.|+..
T Consensus 23 Il~~L~~~~-~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~ 66 (136)
T 1mzb_A 23 ILQMLDSAE-QRHMSAEDVYKALMEAGEDV----GLATVYRVLTQFEAA 66 (136)
T ss_dssp HHHHHHCC--CCSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHH
T ss_pred HHHHHHhCC-CCCCCHHHHHHHHHhhCCCC----CHHHHHHHHHHHHHC
Confidence 566776531 1589999999999 67 899999999999986
No 455
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=61.61 E-value=6.3 Score=25.11 Aligned_cols=24 Identities=8% Similarity=0.080 Sum_probs=20.2
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHH
Q 045543 14 AKLSAAEIEAQMPSHNPNAAVMLDRVLR 41 (239)
Q Consensus 14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~ 41 (239)
.+.|.+|||+.+|+ ++..+...+.
T Consensus 29 ~~~s~~eIA~~l~i----s~~tV~~~~~ 52 (73)
T 1ku3_A 29 REHTLEEVGAYFGV----TRERIRQIEN 52 (73)
T ss_dssp SCCCHHHHHHHHTC----CHHHHHHHHH
T ss_pred CCCCHHHHHHHHCC----CHHHHHHHHH
Confidence 48999999999999 8888776543
No 456
>2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae}
Probab=60.64 E-value=4.4 Score=29.97 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=17.9
Q ss_pred HHHHHHHHhhCCCCceEEE
Q 045543 151 LSLLKNCYEAIPGNGKIII 169 (239)
Q Consensus 151 ~~iL~~~~~aL~pgg~lli 169 (239)
+.+++.++++|+|||+|.-
T Consensus 78 r~li~~l~~aLkpgG~L~g 96 (136)
T 2km1_A 78 KKLISVLADSLKPNGSLIG 96 (136)
T ss_dssp HHHHHHHHTTCCTTCCEEC
T ss_pred HHHHHHHHHHhCCCCEEEe
Confidence 7899999999999999987
No 457
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=60.56 E-value=5.1 Score=28.30 Aligned_cols=36 Identities=17% Similarity=0.204 Sum_probs=29.4
Q ss_pred ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
.|+..|.+ +.|..|||+.+|+ +...+.|+-|.|-..
T Consensus 50 ~Ia~lL~~-----G~SyreIa~~tG~----StaTIsRv~r~L~~g 85 (107)
T 3frw_A 50 EVAKMLTD-----KRTYLDISEKTGA----STATISRVNRSLNYG 85 (107)
T ss_dssp HHHHHHHT-----TCCHHHHHHHHCC----CHHHHHHHHHHHHHS
T ss_pred HHHHHHHc-----CCCHHHHHHHHCc----cHHHHHHHHHHHHcc
Confidence 35666776 4999999999999 999999988887653
No 458
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=60.15 E-value=1.8 Score=35.11 Aligned_cols=36 Identities=3% Similarity=0.057 Sum_probs=31.7
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
|+..|.+ +|.|+.|||+.+|+ ++..+.+.|+.|...
T Consensus 17 IL~~L~~----g~~s~~ELa~~lgl----S~stVs~hL~~Le~a 52 (232)
T 2qlz_A 17 LLSHLTC----MECYFSLLSSKVSV----SSTAVAKHLKIMERE 52 (232)
T ss_dssp HHHHHTT----TTTCSSSSCTTCCC----CHHHHHHHHHHHHHT
T ss_pred HHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence 5566665 69999999999999 999999999999886
No 459
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=59.57 E-value=5.4 Score=33.68 Aligned_cols=49 Identities=6% Similarity=0.072 Sum_probs=36.9
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---C-CCCCCeEecCh
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---A-GDDRRLQRLAP 58 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~-~~~~~~y~~t~ 58 (239)
|.+.|.+. +++|.+|||+++++ ++..+.|-++.|... . ...+..|.+.+
T Consensus 10 Il~~L~~~---~~~s~~eLa~~l~v----S~~ti~r~l~~L~~~G~~i~~~~g~GY~l~~ 62 (321)
T 1bia_A 10 LIALLANG---EFHSGEQLGETLGM----SRAAINKHIQTLRDWGVDVFTVPGKGYSLPE 62 (321)
T ss_dssp HHHHHTTS---SCBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCCCEEETTTEEECSS
T ss_pred HHHHHHcC---CCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCcEEEecCCCcEEee
Confidence 45667552 68999999999999 999999999999876 1 12334677653
No 460
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=59.50 E-value=3.5 Score=29.05 Aligned_cols=21 Identities=14% Similarity=0.359 Sum_probs=18.4
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCC
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPS 27 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~ 27 (239)
|++.|.+ +|+|+.|||+.+|+
T Consensus 16 Ii~lL~~----~plta~ei~~~l~i 36 (105)
T 2gmg_A 16 IIELLLE----GDYSPSELARILDM 36 (105)
T ss_dssp HHHHTTT----SCBCTTHHHHSSCC
T ss_pred HHHHHHc----CCCCHHHHHHHhCC
Confidence 5677775 79999999999999
No 461
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=59.16 E-value=8.5 Score=27.06 Aligned_cols=34 Identities=15% Similarity=0.269 Sum_probs=26.7
Q ss_pred hHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHh
Q 045543 5 EIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRS 43 (239)
Q Consensus 5 d~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L 43 (239)
+.|.++- ..++|+++||+.+|+ ++..+.|+++.-
T Consensus 14 ~~i~~~~-~~~~~~~~lA~~~~~----S~~~l~r~fk~~ 47 (120)
T 3mkl_A 14 TVINNNI-AHEWTLARIASELLM----SPSLLKKKLREE 47 (120)
T ss_dssp HHHHTST-TSCCCHHHHHHHTTC----CHHHHHHHHHHT
T ss_pred HHHHHhc-cCCCCHHHHHHHHCc----CHHHHHHHHHHc
Confidence 4444432 258999999999999 999999998763
No 462
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=58.72 E-value=10 Score=30.82 Aligned_cols=56 Identities=7% Similarity=0.063 Sum_probs=40.7
Q ss_pred chHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC------CCCCCC---eEecChhhHHHH
Q 045543 4 FEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS------AGDDRR---LQRLAPVAKYVL 64 (239)
Q Consensus 4 fd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~------~~~~~~---~y~~t~~s~~l~ 64 (239)
...|..++ ++++|..|||+.+++ ++..+.++++-|... ..+.++ ...+|+.++.+.
T Consensus 164 L~~L~~~~-~~~~t~~eLa~~l~i----~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~ 228 (250)
T 1p4x_A 164 LAIITSQN-KNIVLLKDLIETIHH----KYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHA 228 (250)
T ss_dssp HHHHHTTT-TCCEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHH
T ss_pred HHHHHhCC-CCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHH
Confidence 34555532 136999999999999 999999999999885 112222 356889887765
No 463
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=58.69 E-value=7.4 Score=35.86 Aligned_cols=55 Identities=9% Similarity=0.065 Sum_probs=43.7
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhcc-------CCCCCCCeEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLS-------SAGDDRRLQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~-------~~~~~~~~y~~t~~s~~l~ 64 (239)
|.+.|.+. +.+|.++||+.+++ ++..+.+.|+.|.. +.+..++.|.+++..+..+
T Consensus 435 iL~~l~~~---~~it~~~la~~l~~----s~~~~~~~L~~L~~~~~~~~glie~~g~~y~L~~~~~~~~ 496 (583)
T 3lmm_A 435 VLYLLFQR---PFITIDVVARGLQS----GKEAARNALEAARQTTVAGAPLIIAHDGVWLLGNACREIL 496 (583)
T ss_dssp HHHHHHHS---SSBCHHHHHHHHTS----CHHHHHHHHHHHHTCEETTEESEEEETTEEEECHHHHHHH
T ss_pred HHHHHHHC---CCcCHHHHHHHhCc----CHHHHHHHHHHHHhhhccccceEEEeCCEEEECHHHHHHh
Confidence 34556664 58999999999999 99999999999987 2344458899999866554
No 464
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=58.44 E-value=6.7 Score=27.52 Aligned_cols=28 Identities=14% Similarity=0.334 Sum_probs=25.2
Q ss_pred CCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 15 KLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 15 ~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
..|+.|||+++++ ++..+-|+.+.|--.
T Consensus 35 ~~si~elA~~~~v----S~aTv~Rf~kkLGf~ 62 (107)
T 3iwf_A 35 NMTSQEIANQLET----SSTSIIRLSKKVTPG 62 (107)
T ss_dssp TCCHHHHHHHHTS----CHHHHHHHHHHHSTT
T ss_pred HCCHHHHHHHHCC----CHHHHHHHHHHhCCC
Confidence 6899999999999 999999999988653
No 465
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=58.37 E-value=7.5 Score=24.33 Aligned_cols=26 Identities=8% Similarity=0.174 Sum_probs=21.5
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHHh
Q 045543 14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRS 43 (239)
Q Consensus 14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L 43 (239)
.+.|.+|||+.+|+ ++..+...+.-.
T Consensus 24 ~g~s~~eIA~~lgi----s~~tV~~~~~ra 49 (68)
T 2p7v_B 24 TDYTLEEVGKQFDV----TRERIRQIEAKA 49 (68)
T ss_dssp SCCCHHHHHHHHTC----CHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHH
Confidence 48999999999999 898887766443
No 466
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=58.03 E-value=7 Score=28.75 Aligned_cols=54 Identities=11% Similarity=0.020 Sum_probs=41.8
Q ss_pred ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC-----CCCC-----CCeEecChhhHHHH
Q 045543 2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS-----AGDD-----RRLQRLAPVAKYVL 64 (239)
Q Consensus 2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~-----~~~~-----~~~y~~t~~s~~l~ 64 (239)
.+|..+.+.| |...-|+++++ .+..+.+.++.|... .+.. ++...+|+.++.|+
T Consensus 30 ~~f~av~e~g-----S~s~AA~~L~i----SqsavS~~I~~LE~~lG~~Lf~R~~~G~~grg~~LT~~G~~ll 93 (135)
T 2ijl_A 30 ELMQLIAETG-----SISAAGRAMDM----SYRRAWLLVDALNHMFRQPVICSQRGGKQGGGAALTVFGAELL 93 (135)
T ss_dssp HHHHHHHHHS-----CHHHHHHHTTC----CHHHHHHHHHHHHHHBSSCSEEECCC------EEECHHHHHHH
T ss_pred HHHHHHHHhC-----CHHHHHHHHCc----CHHHHHHHHHHHHHHHCCeeEEecCCCCCCCceeECHHHHHHH
Confidence 4677888744 88899999999 999999999999875 1222 25799999999887
No 467
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=57.93 E-value=8.2 Score=23.81 Aligned_cols=31 Identities=6% Similarity=0.209 Sum_probs=25.6
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRR 42 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~ 42 (239)
|+..+.+ .. |..++|+++|+ .+..+.++++.
T Consensus 6 l~~~~~~----~g-s~~~~A~~lgi----s~~~vs~~~~~ 36 (67)
T 2pij_A 6 LSKYLEE----HG-TQSALAAALGV----NQSAISQMVRA 36 (67)
T ss_dssp HHHHHHH----TC-CHHHHHHHHTS----CHHHHHHHHHT
T ss_pred HHHHHHH----cC-CHHHHHHHHCc----CHHHHHHHHcC
Confidence 5566776 34 99999999999 99999999863
No 468
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=57.83 E-value=13 Score=26.17 Aligned_cols=53 Identities=13% Similarity=0.181 Sum_probs=40.6
Q ss_pred chHhHhcCCCCCCCHHHHHHhC--------CCCCCCChhhHHHHHHHhccC-----C--C----CCCCeEecChhhHHHH
Q 045543 4 FEIMAKAGPRAKLSAAEIEAQM--------PSHNPNAAVMLDRVLRRSLSS-----A--G----DDRRLQRLAPVAKYVL 64 (239)
Q Consensus 4 fd~L~~~g~~~~~t~~eLA~~~--------g~~~~~~~~~l~rlL~~L~~~-----~--~----~~~~~y~~t~~s~~l~ 64 (239)
...|.+ +|.+.-||++.+ ++ ++..+.+.|+-|... . + +..-.|++|+.++..+
T Consensus 18 L~~L~~----~~~~Gyei~~~l~~~~~~~~~i----~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l 89 (116)
T 3f8b_A 18 LNVLKQ----GDNYVYGIIKQVKEASNGEMEL----NEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENM 89 (116)
T ss_dssp HHHHHH----CCBCHHHHHHHHHHHTTTCCCC----CHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHHHHHHH
T ss_pred HHHHHh----CCCCHHHHHHHHHHHhCCCCCC----CcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECHHHHHHH
Confidence 345666 799999999887 67 999999999999886 1 1 1123499999998766
No 469
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=57.36 E-value=7.6 Score=33.80 Aligned_cols=21 Identities=14% Similarity=0.172 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhCCCCceEEEE
Q 045543 150 CLSLLKNCYEAIPGNGKIIII 170 (239)
Q Consensus 150 ~~~iL~~~~~aL~pgg~lli~ 170 (239)
.+.+++.|+++|+|||.++..
T Consensus 310 t~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 310 LRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp HHHHHHHHHHTEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEe
Confidence 467899999999999987664
No 470
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=56.96 E-value=6.2 Score=27.03 Aligned_cols=29 Identities=38% Similarity=0.334 Sum_probs=26.3
Q ss_pred CCC-CHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 14 AKL-SAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 14 ~~~-t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
..+ |..+||+.+|+ +...+.+-|+.|...
T Consensus 33 ~~lps~~eLa~~~~v----Sr~tvr~al~~L~~~ 62 (102)
T 1v4r_A 33 DTLPSVADIRAQFGV----AAKTVSRALAVLKSE 62 (102)
T ss_dssp SBCCCHHHHHHHSSS----CTTHHHHHTTTTTTS
T ss_pred CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence 556 99999999999 999999999999887
No 471
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=56.28 E-value=4.2 Score=32.03 Aligned_cols=36 Identities=11% Similarity=0.118 Sum_probs=31.6
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
|...|.+ +|.|+.|||+.+|+ ++..+.+.|+.|...
T Consensus 20 IL~~L~~----~~~s~~eLa~~l~i----s~stvs~hLk~Le~~ 55 (202)
T 2p4w_A 20 ILFLLTK----RPYFVSELSRELGV----GQKAVLEHLRILEEA 55 (202)
T ss_dssp HHHHHHH----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHT
T ss_pred HHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence 4556665 79999999999999 999999999999886
No 472
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=56.23 E-value=4.2 Score=31.40 Aligned_cols=37 Identities=16% Similarity=0.277 Sum_probs=30.7
Q ss_pred ccchHhHhcCCCCCCCHHHHHHhCC-CCCCCChhhHHHHHHHhccC
Q 045543 2 GVFEIMAKAGPRAKLSAAEIEAQMP-SHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 2 gifd~L~~~g~~~~~t~~eLA~~~g-~~~~~~~~~l~rlL~~L~~~ 46 (239)
.|...|.+ ++.|+.|||+.++ + +...+.+-|+.|...
T Consensus 27 ~il~~L~~----~~~~~~~l~~~l~~~----~~~~~s~Hl~~L~~a 64 (182)
T 4g6q_A 27 RITQLLIG----RSLTTRELAELLPDV----ATTTLYRQVGILVKA 64 (182)
T ss_dssp HHHHHTTT----SCEEHHHHHHHCTTB----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHh----CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHC
Confidence 35667765 7999999999996 8 788899999999775
No 473
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=56.02 E-value=8.7 Score=28.44 Aligned_cols=54 Identities=13% Similarity=0.172 Sum_probs=41.1
Q ss_pred cchHhHhcCCCCCCCHHHHHHhC--------CCCCCCChhhHHHHHHHhccC-------CC----CCCCeEecChhhHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQM--------PSHNPNAAVMLDRVLRRSLSS-------AG----DDRRLQRLAPVAKYV 63 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~--------g~~~~~~~~~l~rlL~~L~~~-------~~----~~~~~y~~t~~s~~l 63 (239)
|...|.+ +|.+.-||++.+ ++ ++..+.++|+-|... .. +..-.|.+|+.++.+
T Consensus 46 IL~~L~~----~~~~gyeI~~~l~~~~~~~~~i----s~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~ 117 (145)
T 1xma_A 46 ILSLLIE----GDSYGYEISKNIRIKTDELYVI----KETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKY 117 (145)
T ss_dssp HHHHHHH----CCEEHHHHHHHHHHHHTTSCCC----CHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHH
T ss_pred HHHHHHh----CCCCHHHHHHHHHHhhCCccCc----ChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECHHHHHH
Confidence 3456666 689999999888 58 999999999999886 11 112359999999876
Q ss_pred H
Q 045543 64 L 64 (239)
Q Consensus 64 ~ 64 (239)
+
T Consensus 118 l 118 (145)
T 1xma_A 118 Y 118 (145)
T ss_dssp H
T ss_pred H
Confidence 5
No 474
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=55.96 E-value=18 Score=26.08 Aligned_cols=43 Identities=12% Similarity=-0.021 Sum_probs=33.6
Q ss_pred CCCCC-CHHHHHHhCCCCCCCChhhHHHHHHHhccC----CCCCCCeEecCh
Q 045543 12 PRAKL-SAAEIEAQMPSHNPNAAVMLDRVLRRSLSS----AGDDRRLQRLAP 58 (239)
Q Consensus 12 ~~~~~-t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~----~~~~~~~y~~t~ 58 (239)
+|..+ |..+||+.+|+ +...+++-|+.|... ..+..|.|....
T Consensus 24 ~G~~LPse~~La~~~gv----Sr~tVr~Al~~L~~~Gli~~~~g~G~~V~~~ 71 (129)
T 2ek5_A 24 IDQRVPSTNELAAFHRI----NPATARNGLTLLVEAGILYKKRGIGMFVSAQ 71 (129)
T ss_dssp TTSCBCCHHHHHHHTTC----CHHHHHHHHHHHHTTTSEEEETTTEEEECTT
T ss_pred CCCcCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEecCCEEEEecC
Confidence 34566 89999999999 999999999999997 234556665443
No 475
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=55.45 E-value=8.8 Score=25.43 Aligned_cols=24 Identities=4% Similarity=-0.003 Sum_probs=20.6
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHH
Q 045543 14 AKLSAAEIEAQMPSHNPNAAVMLDRVLR 41 (239)
Q Consensus 14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~ 41 (239)
.+.|.+|||+.+|+ ++..+...+.
T Consensus 37 ~~~s~~EIA~~lgi----s~~tV~~~~~ 60 (87)
T 1tty_A 37 KPKTLEEVGQYFNV----TRERIRQIEV 60 (87)
T ss_dssp SCCCHHHHHHHHTC----CHHHHHHHHH
T ss_pred CCCCHHHHHHHHCC----CHHHHHHHHH
Confidence 58999999999999 8888876653
No 476
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=55.41 E-value=9.6 Score=32.93 Aligned_cols=37 Identities=11% Similarity=0.307 Sum_probs=32.5
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
|++.|.++ +++|..|||+++|+ ++..+.++++.|...
T Consensus 21 il~~l~~~---~~~sr~~la~~~~l----s~~tv~~~v~~L~~~ 57 (406)
T 1z6r_A 21 VYRLIDQL---GPVSRIDLSRLAQL----APASITKIVHEMLEA 57 (406)
T ss_dssp HHHHHHSS---CSCCHHHHHHHTTC----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHC
Confidence 56777765 69999999999999 999999999999875
No 477
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=55.34 E-value=10 Score=26.58 Aligned_cols=43 Identities=9% Similarity=0.083 Sum_probs=33.4
Q ss_pred CCCC-CHHHHHHhCCCCCCCChhhHHHHHHHhccC----CCCCCCeEecChh
Q 045543 13 RAKL-SAAEIEAQMPSHNPNAAVMLDRVLRRSLSS----AGDDRRLQRLAPV 59 (239)
Q Consensus 13 ~~~~-t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~----~~~~~~~y~~t~~ 59 (239)
|..+ |..+||+++|+ +...+++-|+.|... ..+..|.|...+.
T Consensus 30 G~~lPs~~~La~~~~v----Sr~tvr~al~~L~~~Gli~~~~~~G~~V~~~~ 77 (113)
T 3tqn_A 30 GEMIPSIRKISTEYQI----NPLTVSKAYQSLLDDNVIEKRRGLGMLVKAGA 77 (113)
T ss_dssp TCEECCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEETTTEEEECTTH
T ss_pred CCcCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEecCCeEEEeCCc
Confidence 3556 89999999999 999999999999987 2344566655443
No 478
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=55.05 E-value=10 Score=27.04 Aligned_cols=37 Identities=11% Similarity=0.207 Sum_probs=29.2
Q ss_pred hHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 5 EIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 5 d~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
+.|.++ ...++|+++||+.+|+ ++..+.|+++.....
T Consensus 18 ~~i~~~-~~~~~sl~~lA~~~~~----S~~~l~r~fk~~~G~ 54 (129)
T 1bl0_A 18 DWIEDN-LESPLSLEKVSERSGY----SKWHLQRMFKKETGH 54 (129)
T ss_dssp HHHHTT-TTSCCCCHHHHHHSSS----CHHHHHHHHHHHHSS
T ss_pred HHHHHc-cCCCCCHHHHHHHHCc----CHHHHHHHHHHHHCc
Confidence 444443 1257999999999999 999999999877665
No 479
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=54.21 E-value=10 Score=23.80 Aligned_cols=28 Identities=7% Similarity=0.158 Sum_probs=22.5
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHHhcc
Q 045543 14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLS 45 (239)
Q Consensus 14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~ 45 (239)
...|..|||+.+|+ ++..+...++.+..
T Consensus 25 ~g~s~~eIA~~l~i----s~~tV~~~~~~~~~ 52 (74)
T 1fse_A 25 QDKTTKEIASELFI----SEKTVRNHISNAMQ 52 (74)
T ss_dssp TTCCHHHHHHHHTS----CHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCC----CHHHHHHHHHHHHH
Confidence 36799999999999 88888777665443
No 480
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=54.05 E-value=14 Score=26.20 Aligned_cols=53 Identities=17% Similarity=0.163 Sum_probs=40.9
Q ss_pred chHhHhcCCCCCCCHHHHHHhC------CCCCCCChhhHHHHHHHhccC------C-C----CCCCeEecChhhHHHH
Q 045543 4 FEIMAKAGPRAKLSAAEIEAQM------PSHNPNAAVMLDRVLRRSLSS------A-G----DDRRLQRLAPVAKYVL 64 (239)
Q Consensus 4 fd~L~~~g~~~~~t~~eLA~~~------g~~~~~~~~~l~rlL~~L~~~------~-~----~~~~~y~~t~~s~~l~ 64 (239)
...|.+ +|.+--||++.+ ++ ++..+..+|+-|... . + +....|++|+.++..+
T Consensus 19 L~lL~~----~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~~G~~~l 88 (116)
T 3hhh_A 19 LAIIQR----KETYGYEITKILNDQGFTEI----VEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSSGEAEL 88 (116)
T ss_dssp HHHHHH----SCBCHHHHHHHHHTTSCSSC----CHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECHHHHHHH
T ss_pred HHHHhc----CCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHH
Confidence 345666 799999999998 67 999999999999886 1 1 1123599999998765
No 481
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=53.65 E-value=12 Score=32.87 Aligned_cols=56 Identities=11% Similarity=0.097 Sum_probs=40.5
Q ss_pred chHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCCC---CeEecChhhHHHH
Q 045543 4 FEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDDR---RLQRLAPVAKYVL 64 (239)
Q Consensus 4 fd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~~---~~y~~t~~s~~l~ 64 (239)
...|.+. +++++|..|||+++++ ++..+.|+++-|... . .+.+ -.-.+|+.++.+.
T Consensus 410 l~~l~~~-~~~~~~~~~l~~~~~~----~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~ 474 (487)
T 1hsj_A 410 LNHILRS-ESNEISSKEIAKCSEF----KPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANI 474 (487)
T ss_dssp HHHHHTC-SCSEEEHHHHHHSSCC----CHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHH
T ss_pred HHHHHhC-CCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHH
Confidence 3455553 1258999999999999 999999999999986 1 1122 2356788887654
No 482
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=53.42 E-value=6.1 Score=25.68 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=19.2
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHH
Q 045543 14 AKLSAAEIEAQMPSHNPNAAVMLDRV 39 (239)
Q Consensus 14 ~~~t~~eLA~~~g~~~~~~~~~l~rl 39 (239)
..+|.++||+++|+ ++..+.++
T Consensus 21 ~glT~~~LA~~~Gv----s~stls~~ 42 (74)
T 1neq_A 21 RKLSLSALSRQFGY----APTTLANA 42 (74)
T ss_dssp TSCCHHHHHHHHSS----CHHHHHHT
T ss_pred cCCCHHHHHHHHCc----CHHHHHHH
Confidence 67999999999999 88877755
No 483
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=53.35 E-value=15 Score=29.08 Aligned_cols=46 Identities=11% Similarity=0.169 Sum_probs=37.4
Q ss_pred CCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---CCCCCCeEecChhhHHHH
Q 045543 15 KLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---AGDDRRLQRLAPVAKYVL 64 (239)
Q Consensus 15 ~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~~~~~~~y~~t~~s~~l~ 64 (239)
+.+..+||+++++ ++..+.++++-|... .......+.+|+.++.+.
T Consensus 24 ~~~~~~la~~l~v----s~~tvs~~l~~Le~~GlV~r~~~~~v~LT~~G~~~~ 72 (226)
T 2qq9_A 24 TPLRARIAERLEQ----SGPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLA 72 (226)
T ss_dssp CCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECTTSBEEECHHHHHHH
T ss_pred CccHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEeCCCCeEECHHHHHHH
Confidence 3355999999999 999999999999997 223346689999998765
No 484
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=53.14 E-value=4.9 Score=28.23 Aligned_cols=55 Identities=15% Similarity=0.168 Sum_probs=40.3
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCC----CCCCCChhhHHHHHHHhccC----CCCCCCe---EecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMP----SHNPNAAVMLDRVLRRSLSS----AGDDRRL---QRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g----~~~~~~~~~l~rlL~~L~~~----~~~~~~~---y~~t~~s~~l~ 64 (239)
|...|... ++.|..|||+.++ + ++..+.++|+-|... ...++.+ +.+|+.++.+.
T Consensus 15 vL~~l~~~---~~~t~~ela~~l~~~~~~----s~~tv~~~l~~L~~~Glv~r~~~~rr~~~~~lT~~g~~~~ 80 (123)
T 1okr_A 15 VMNIIWMK---KYASANNIIEEIQMQKDW----SPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKY 80 (123)
T ss_dssp HHHHHHHH---SSEEHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHHHHH
T ss_pred HHHHHHhC---CCcCHHHHHHHHhccCCC----cHhhHHHHHHHHHHCCCeEEEecCCeEEEEEecCHHHHHH
Confidence 44556653 6999999999999 6 799999999999986 1222333 35788877665
No 485
>1ssz_A Pulmonary surfactant-associated protein B; LUNG surfactant protein, saposin, surface active protein; NMR {Synthetic}
Probab=53.04 E-value=6.6 Score=20.81 Aligned_cols=19 Identities=32% Similarity=0.749 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhCCCCceEE
Q 045543 150 CLSLLKNCYEAIPGNGKII 168 (239)
Q Consensus 150 ~~~iL~~~~~aL~pgg~ll 168 (239)
|+.+++++...++.+||.+
T Consensus 4 cr~likriqa~ipk~grml 22 (34)
T 1ssz_A 4 CRALIKRIQAMIPKGGRML 22 (34)
T ss_dssp HHHHHHHHHHHCSSSCCCC
T ss_pred HHHHHHHHHHHccccchhh
Confidence 7889999999988888753
No 486
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=52.29 E-value=13 Score=31.35 Aligned_cols=28 Identities=11% Similarity=-0.273 Sum_probs=18.4
Q ss_pred HHHHHhhCCCceeeEEEcCCceeEEEEE
Q 045543 211 GMALTAKNGFKGVNYESFVCNFYIMEFI 238 (239)
Q Consensus 211 ~~~ll~~aGf~~~~~~~~~~~~~vie~~ 238 (239)
+++-|.+|||++.++...++..-.+.|.
T Consensus 231 VRR~L~~aGF~V~k~~G~g~KReml~A~ 258 (308)
T 3vyw_A 231 VRKSLLTLGFKVGSSREIGRKRKGTVAS 258 (308)
T ss_dssp HHHHHHHTTCEEEEEECC---CEEEEEE
T ss_pred HHHHHHHCCCEEEecCCCCCCCceeEEe
Confidence 3899999999988776555544455543
No 487
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=52.29 E-value=7.1 Score=29.37 Aligned_cols=36 Identities=6% Similarity=0.057 Sum_probs=31.5
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS 46 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 46 (239)
|.+.|.+ |+.|..+||+++|+ +-...+-.|..|.-.
T Consensus 16 ILE~Lk~----G~~~t~~Iak~LGl----Shg~aq~~Ly~LeRE 51 (165)
T 2vxz_A 16 ILALLAD----GCKTTSLIQQRLGL----SHGRAKALIYVLEKE 51 (165)
T ss_dssp HHHHHTT----CCEEHHHHHHHHTC----CHHHHHHHHHHHHHT
T ss_pred HHHHHHh----CCccHHHHHHHhCC----cHHHHHHHHHHHHhc
Confidence 4566774 79999999999999 999999999999876
No 488
>3gva_A Alkyltransferase-like protein 1; alkylated DNA damage repair, DNA damage, DNA repair, DNA- binding, DNA binding protein; 2.00A {Schizosaccharomyces pombe} PDB: 3gx4_X* 3gyh_X* 4enj_A* 4enk_A* 4enm_A* 4enn_A* 4hdu_A* 4hdv_A*
Probab=51.79 E-value=15 Score=26.31 Aligned_cols=39 Identities=13% Similarity=0.172 Sum_probs=27.5
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHh
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRS 43 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L 43 (239)
|.+.|.+.+.|...|..|||+.+|. |..++.+...|...
T Consensus 10 Vw~~l~~IP~G~v~TYg~IA~~~G~--p~aaRaVG~Al~~N 48 (116)
T 3gva_A 10 VYDAVCEIPYGKVSTYGEIARYVGM--PSYARQVGQAMKHL 48 (116)
T ss_dssp HHHHHTTSCTTCBBCHHHHHHHTTC--TTCHHHHHHHHHTS
T ss_pred HHHHHhcCCCCCeEeHHHHHHHhCC--CCcHHHHHHHHHhC
Confidence 5567777666789999999999996 22455555555443
No 489
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=51.50 E-value=13 Score=30.30 Aligned_cols=81 Identities=10% Similarity=-0.028 Sum_probs=54.0
Q ss_pred CCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---CCCCCCeEecChhhHHHHhcCCCcccccccCc-hHHHHHHHHHHh
Q 045543 15 KLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---AGDDRRLQRLAPVAKYVLHYGIGDYEHAGLDS-RFNEVLNTAMLS 90 (239)
Q Consensus 15 ~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~~~~~~~y~~t~~s~~l~~~g~~~~~~l~~~~-~~~~~f~~~m~~ 90 (239)
|-++.||++.+++ ++..+..+|+.|+.. ..-.++.|-++..-..+.. -+-+++ ++. -....|.... +
T Consensus 157 pp~~~dl~~~l~~----~~~~~~~~l~~l~~~g~lv~l~~~~~~~~~~~~~~~~---~l~~~~-~~~~it~a~~Rd~l-g 227 (258)
T 1lva_A 157 PPSFKEVAGSFNL----DPSELEELLHYLVREGVLVKINDEFYWHRQALGEARE---VIKNLA-STGPFGLAEARDAL-G 227 (258)
T ss_dssp CCBHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEESSSSBEEEHHHHHHHHH---HHHHHH-TTSCBCHHHHHHHH-T
T ss_pred CCCHHHHHhHhCC----CHHHHHHHHHHHHHCCCEEEecCCeEEcHHHHHHHHH---HHHHHH-hcCCcCHHHHHHHh-C
Confidence 6689999999999 999999999999998 3455788877766554431 112222 222 1234455444 4
Q ss_pred cccccHHHHHhhcc
Q 045543 91 HNSIVMNRILDYYK 104 (239)
Q Consensus 91 ~~~~~~~~~~~~~~ 104 (239)
.|+-.+=.+++.+|
T Consensus 228 ~SRK~aIplLE~~D 241 (258)
T 1lva_A 228 SSRKYVLPLLEYLD 241 (258)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHh
Confidence 55555568888887
No 490
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=51.27 E-value=9.7 Score=30.78 Aligned_cols=54 Identities=9% Similarity=0.085 Sum_probs=45.3
Q ss_pred ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC-----CCCCCCeEecChhhHHHH
Q 045543 2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS-----AGDDRRLQRLAPVAKYVL 64 (239)
Q Consensus 2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~-----~~~~~~~y~~t~~s~~l~ 64 (239)
.+|..+++.| |...-|+++++ .+..+.+-++.|... -+..+....+|+.++.|.
T Consensus 8 ~~f~~v~~~g-----s~t~AA~~L~i----sq~avS~~i~~LE~~lg~~Lf~R~~r~~~lT~~G~~l~ 66 (305)
T 3fxq_A 8 QALICIEEVG-----SLRAAAQLLHL----SQPALSAAIQQLEDELKAPLLVRTKRGVSLTSFGQAFM 66 (305)
T ss_dssp HHHHHHHHHS-----CHHHHHHHTTC----CHHHHHHHHHHHHHHHTSCSEEECSSSEEECHHHHHHH
T ss_pred HHHHHHHHcC-----CHHHHHHHhCC----CHHHHHHHHHHHHHHhCCeeEEecCCCccCCHhHHHHH
Confidence 4688888843 89999999999 999999999999886 234567899999999887
No 491
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=51.24 E-value=12 Score=32.78 Aligned_cols=15 Identities=33% Similarity=0.567 Sum_probs=12.9
Q ss_pred CCcceEEEeCCCCCC
Q 045543 107 EKIKQLVDVGGGCGK 121 (239)
Q Consensus 107 ~~~~~vlDvGGG~G~ 121 (239)
....+|+|+|||+|.
T Consensus 92 ~~g~~VLDLgcG~G~ 106 (410)
T 3ll7_A 92 REGTKVVDLTGGLGI 106 (410)
T ss_dssp CTTCEEEESSCSSSH
T ss_pred CCCCEEEEeCCCchH
Confidence 335899999999998
No 492
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=51.12 E-value=19 Score=27.35 Aligned_cols=54 Identities=11% Similarity=0.255 Sum_probs=40.3
Q ss_pred cchHhHhcCCCCCCCHHHHHHhC--------CCCCCCChhhHHHHHHHhccC-----C-CC-----CCCeEecChhhHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQM--------PSHNPNAAVMLDRVLRRSLSS-----A-GD-----DRRLQRLAPVAKYV 63 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~--------g~~~~~~~~~l~rlL~~L~~~-----~-~~-----~~~~y~~t~~s~~l 63 (239)
|...|.+ +|.+.-||++.+ ++ ++..+.+.|+-|... . .. ..-.|++|+.++..
T Consensus 7 iL~lL~~----~~~~gyel~~~l~~~~~~~~~~----s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~~ 78 (179)
T 1yg2_A 7 ILTVLST----RDATGYDITKEFSASIGYFWKA----SHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRSA 78 (179)
T ss_dssp HHHHHHH----CCBCHHHHHHHHTTGGGGTCCC----CHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHHH
T ss_pred HHHHHhc----CCCCHHHHHHHHHHHhCCccCC----CcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHHHH
Confidence 3455666 799999999999 57 899999999999885 1 11 23359999999865
Q ss_pred H
Q 045543 64 L 64 (239)
Q Consensus 64 ~ 64 (239)
+
T Consensus 79 l 79 (179)
T 1yg2_A 79 L 79 (179)
T ss_dssp H
T ss_pred H
Confidence 4
No 493
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=50.93 E-value=5.5 Score=32.89 Aligned_cols=89 Identities=8% Similarity=0.078 Sum_probs=42.9
Q ss_pred ChhhHHHHHHHhccC----CCCCCCeEecChhhHHHHhcCCC----ccccccc--CchHHHHHHHHHHhc-ccc-----c
Q 045543 32 AAVMLDRVLRRSLSS----AGDDRRLQRLAPVAKYVLHYGIG----DYEHAGL--DSRFNEVLNTAMLSH-NSI-----V 95 (239)
Q Consensus 32 ~~~~l~rlL~~L~~~----~~~~~~~y~~t~~s~~l~~~g~~----~~~~l~~--~~~~~~~f~~~m~~~-~~~-----~ 95 (239)
++..+.++.+.+... ........-...+.+.+...|.+ +++++.. +++.+..|...+... +.. .
T Consensus 13 ~~~~~~~~~~~i~~~~Gi~~~~~k~~~~~~Rl~~r~~~~~~~~~~~y~~~l~~~~~~~e~~~l~~~lt~~~t~FfRd~~~ 92 (274)
T 1af7_A 13 SDAHFRRICQLIYQRAGIVLADHKRDMVYNRLVRRLRALGLDDFGRYLSMLEANQNSAEWQAFINALTTNLTAFFREAHH 92 (274)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHTCCCHHHHHHHHHHCTTCTHHHHHHHHHCCCCCCTTTTTTH
T ss_pred CHHHHHHHHHHHHHHHCCCCchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHccCCCHHHHHHHHHHHhhcCccccCChHH
Confidence 444555555555443 11111112223334444455632 4555543 566666676666322 111 1
Q ss_pred HHHHHhh-ccCCCCcceEEEeCCCCCC
Q 045543 96 MNRILDY-YKGFEKIKQLVDVGGGCGK 121 (239)
Q Consensus 96 ~~~~~~~-~~~~~~~~~vlDvGGG~G~ 121 (239)
...+.+. +| -.+..+|+|+|||+|.
T Consensus 93 f~~l~~~llp-~~~~~rIld~GCgTGe 118 (274)
T 1af7_A 93 FPILAEHARR-RHGEYRVWSAAASTGE 118 (274)
T ss_dssp HHHHHHHHHH-SCSCEEEEESCCTTTH
T ss_pred HHHHHHHccC-CCCCcEEEEeeccCCh
Confidence 1122211 23 1245799999999998
No 494
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=50.71 E-value=13 Score=29.24 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=39.0
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CCCCCCeEecChhhHHHH
Q 045543 14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AGDDRRLQRLAPVAKYVL 64 (239)
Q Consensus 14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~~~~~~y~~t~~s~~l~ 64 (239)
+|++..+||+++++ .++.+...++-|... .+...+...+|+.++.+.
T Consensus 29 ~~V~~~~LA~~Lgv----S~~SV~~~lkkL~e~GLV~~~~~Gv~LTe~G~~~A 77 (200)
T 2p8t_A 29 EPLGRKQISERLEL----GEGSVRTLLRKLSHLDIIRSKQRGHFLTLKGKEIR 77 (200)
T ss_dssp SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC--CEEECHHHHHHH
T ss_pred CCccHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEeCCCeEECHHHHHHH
Confidence 68999999999999 999999999999997 222227788999998766
No 495
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=49.79 E-value=16 Score=25.31 Aligned_cols=54 Identities=13% Similarity=0.170 Sum_probs=39.7
Q ss_pred cchHhHhcCCCCCCCHHHHHHh----CCCCCCCChhhHHHHHHHhccC------CCCCCC----eEecChhhHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQ----MPSHNPNAAVMLDRVLRRSLSS------AGDDRR----LQRLAPVAKYVL 64 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~----~g~~~~~~~~~l~rlL~~L~~~------~~~~~~----~y~~t~~s~~l~ 64 (239)
|...|.+ +|.+.-+|++. +++ ++..+.++|+-|... ....++ .|++|+.++..+
T Consensus 14 IL~~L~~----~~~~gyel~~~l~~~~~i----~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l 81 (108)
T 3l7w_A 14 ILAIVSK----HDSYGYDISQTIKLIASI----KESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHL 81 (108)
T ss_dssp HHHHHHH----SCEEHHHHHHHHTTTCCC----CHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHH
T ss_pred HHHHHHc----CCCcHHHHHHHHHHHhCC----CcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHH
Confidence 3445666 68888887777 478 999999999999886 111122 489999998765
No 496
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=49.70 E-value=13 Score=25.70 Aligned_cols=25 Identities=8% Similarity=0.166 Sum_probs=21.2
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHH
Q 045543 14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRR 42 (239)
Q Consensus 14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~ 42 (239)
.+.|.+|||+.+|+ ++..+..++.-
T Consensus 38 e~~s~~EIA~~lgi----S~~tVr~~~~r 62 (99)
T 3t72_q 38 TDYTLEEVGKQFDV----TRERIRQIEAK 62 (99)
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHH
Confidence 58999999999999 88888776643
No 497
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=49.68 E-value=8.5 Score=31.49 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=18.6
Q ss_pred HHHHhhccCCCCc--ceEEEeCCCCCC
Q 045543 97 NRILDYYKGFEKI--KQLVDVGGGCGK 121 (239)
Q Consensus 97 ~~~~~~~~~~~~~--~~vlDvGGG~G~ 121 (239)
..+.+... ..+. .+|||+|||.|.
T Consensus 76 e~l~~al~-l~~g~~~~VLDl~~G~G~ 101 (258)
T 2oyr_A 76 EAVAKAVG-IKGDYLPDVVDATAGLGR 101 (258)
T ss_dssp SHHHHHTT-CBTTBCCCEEETTCTTCH
T ss_pred HHHHHHhc-ccCCCCCEEEEcCCcCCH
Confidence 45566665 6665 899999999999
No 498
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=49.26 E-value=8.6 Score=30.71 Aligned_cols=54 Identities=17% Similarity=0.174 Sum_probs=41.8
Q ss_pred ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC-----CCCCCCeEecChhhHHHH
Q 045543 2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS-----AGDDRRLQRLAPVAKYVL 64 (239)
Q Consensus 2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~-----~~~~~~~y~~t~~s~~l~ 64 (239)
.+|..+++.| |...-|+++++ ....+.+-++.|... -+.......+|+.++.|.
T Consensus 7 ~~f~~v~~~g-----s~s~AA~~L~i----sq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~ 65 (294)
T 1ixc_A 7 KYFIAVAEAG-----NMAAAAKRLHV----SQPPITRQMQALEADLGVVLLERSHRGIELTAAGHAFL 65 (294)
T ss_dssp HHHHHHHHHS-----SHHHHHHHHTC----CHHHHHHHHHHHHHHHTSCCBC-----CCBCHHHHHHH
T ss_pred HHHHHHHHcC-----CHHHHHHHhCC----CcchHHHHHHHHHHHHCCEEEEeCCCCeeECHhHHHHH
Confidence 4677888843 99999999999 999999999999886 244567799999998876
No 499
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=49.16 E-value=8.1 Score=26.48 Aligned_cols=31 Identities=10% Similarity=0.133 Sum_probs=25.3
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHH
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLR 41 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~ 41 (239)
|.+.|.+ ...|+.+||+.+|+ ++..+.|.|.
T Consensus 12 I~~~l~~----~~~ti~dlA~~~gV----S~~TVsR~L~ 42 (93)
T 2l0k_A 12 IGKYIVE----TKKTVRVIAKEFGV----SKSTVHKDLT 42 (93)
T ss_dssp HHHHHHH----HCCCHHHHHHHHTS----CHHHHHHHHT
T ss_pred HHHHHHH----cCCCHHHHHHHHCC----CHHHHHHHHc
Confidence 4456666 34899999999999 9999999884
No 500
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=48.77 E-value=15 Score=24.67 Aligned_cols=34 Identities=12% Similarity=0.219 Sum_probs=25.2
Q ss_pred cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhcc
Q 045543 3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLS 45 (239)
Q Consensus 3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~ 45 (239)
|+..+.+ +.|.+|||+.+++ .+..+...++-+..
T Consensus 37 Vl~l~~~-----G~s~~eIA~~L~i----S~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 37 ILQEVEK-----GFTNQEIADALHL----SKRSIEYSLTSIFN 70 (90)
T ss_dssp HHHHHHT-----TCCHHHHHHHHTC----CHHHHHHHHHHHHH
T ss_pred HHHHHHc-----CCCHHHHHHHHCc----CHHHHHHHHHHHHH
Confidence 4455554 7899999999999 88887766655443
Done!