BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045545
(158 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AO0|A Chain A, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|B Chain B, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|C Chain C, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|D Chain D, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
Length = 459
Score = 170 bits (431), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 84/143 (58%), Positives = 110/143 (76%), Gaps = 4/143 (2%)
Query: 4 TRYEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAG 63
RY TFI+PSQ +R+ GV++KLS V GV+EGKRVV+VDDSIVRGTTS +IV +L+EAG
Sbjct: 306 NRYVGRTFIQPSQALREQGVRMKLSAVRGVVEGKRVVMVDDSIVRGTTSRRIVTMLREAG 365
Query: 64 AKEVHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFIGCDSLAFLLIDSLNKML 123
A EVH++I+SPPI C+YG+DT + EELI++ SVEEIR+ IG D+L+FL ++ L K +
Sbjct: 366 ATEVHVKISSPPIAHPCFYGIDTSTHEELIASSHSVEEIRQEIGADTLSFLSVEGLLKGI 425
Query: 124 G---DDSQ-NFCYACFSGKYPVK 142
G DDS C ACF+GKYP +
Sbjct: 426 GRKYDDSNCGQCLACFTGKYPTE 448
>pdb|1GPH|1 Chain 1, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
pdb|1GPH|2 Chain 2, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
pdb|1GPH|3 Chain 3, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
pdb|1GPH|4 Chain 4, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
Length = 465
Score = 169 bits (427), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 83/143 (58%), Positives = 110/143 (76%), Gaps = 4/143 (2%)
Query: 4 TRYEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAG 63
RY TFI+PSQ +R+ GV++KLS V GV+EGKRVV+VDDSIVRGTTS +IV +L+EAG
Sbjct: 306 NRYVGRTFIQPSQALREQGVRMKLSAVRGVVEGKRVVMVDDSIVRGTTSRRIVTMLREAG 365
Query: 64 AKEVHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFIGCDSLAFLLIDSLNKML 123
A EVH++I+SPPI C+YG+DT + EELI++ SV+EIR+ IG D+L+FL ++ L K +
Sbjct: 366 ATEVHVKISSPPIAHPCFYGIDTSTHEELIASSHSVDEIRQEIGADTLSFLSVEGLLKGI 425
Query: 124 G---DDSQ-NFCYACFSGKYPVK 142
G DDS C ACF+GKYP +
Sbjct: 426 GRKYDDSNCGQCLACFTGKYPTE 448
>pdb|1ECF|A Chain A, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase
pdb|1ECF|B Chain B, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase
pdb|1ECG|A Chain A, Don Inactivated Escherichia Coli Glutamine
Phosphoribosylpyrophosphate (Prpp) Amidotransferase
pdb|1ECG|B Chain B, Don Inactivated Escherichia Coli Glutamine
Phosphoribosylpyrophosphate (Prpp) Amidotransferase
pdb|1ECB|A Chain A, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Gmp, 1 Mg Per
Subunit
pdb|1ECB|B Chain B, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Gmp, 1 Mg Per
Subunit
pdb|1ECB|C Chain C, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Gmp, 1 Mg Per
Subunit
pdb|1ECB|D Chain D, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Gmp, 1 Mg Per
Subunit
pdb|1ECC|A Chain A, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With Mn-Cprpp And
5-Oxo- Norleucine
pdb|1ECC|B Chain B, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With Mn-Cprpp And
5-Oxo- Norleucine
pdb|1ECJ|A Chain A, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Amp Per
Tetramer
pdb|1ECJ|B Chain B, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Amp Per
Tetramer
pdb|1ECJ|C Chain C, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Amp Per
Tetramer
pdb|1ECJ|D Chain D, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Amp Per
Tetramer
Length = 504
Score = 104 bits (260), Expect = 2e-23, Method: Composition-based stats.
Identities = 61/142 (42%), Positives = 86/142 (60%), Gaps = 5/142 (3%)
Query: 5 RYEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGA 64
RY TFI P Q++R V+ KL+ K V++VDDSIVRGTTS +I+ + +EAGA
Sbjct: 328 RYVGRTFIMPGQQLRRKSVRRKLNANRAEFRDKNVLLVDDSIVRGTTSEQIIEMAREAGA 387
Query: 65 KEVHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFIGCDSLAFL----LIDSLN 120
K+V++ A+P I YG+D PS+ ELI++ V+EIR+ IG D L F LID++
Sbjct: 388 KKVYLASAAPEIRFPNVYGIDMPSATELIAHGREVDEIRQIIGADGLIFQDLNDLIDAV- 446
Query: 121 KMLGDDSQNFCYACFSGKYPVK 142
+ D Q F + F+G Y K
Sbjct: 447 RAENPDIQQFECSVFNGVYVTK 468
>pdb|1U9Y|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Z|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
Length = 284
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
Query: 16 QKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPP 75
+K R +++++P T + + V +VDD I G T + V+LLKE GAK++ P
Sbjct: 185 EKTRLSPTEIQIAPKTLDAKDRDVFIVDDIISTGGTMATAVKLLKEQGAKKIIAACVHPV 244
Query: 76 IIASCYYGVDTPSSEELISNRMSVEEIREFIGCDSLAFLLIDSL 119
+I + + EE++ + E+ + S+A +++D L
Sbjct: 245 LIGDALNKLYSAGVEEVVGTDTYLSEVSKV----SVAEVIVDLL 284
>pdb|3MBI|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|C Chain C, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|D Chain D, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
Length = 287
Score = 34.3 bits (77), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 11 FIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69
FIE ++I D V++K+ V + GK++++VDD I G T +K LL+E GA ++++
Sbjct: 183 FIEK-KRIDDRTVEMKVPNVD--VNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIYV 238
>pdb|3LPN|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LPN|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LRT|A Chain A, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3LRT|B Chain B, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3NAG|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
pdb|3NAG|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
Length = 286
Score = 34.3 bits (77), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 11 FIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69
FIE ++I D V++K+ V + GK++++VDD I G T +K LL+E GA ++++
Sbjct: 181 FIEK-KRIDDRTVEMKVPNVD--VNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIYV 236
>pdb|1VDM|A Chain A, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|B Chain B, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|C Chain C, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|D Chain D, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|E Chain E, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|F Chain F, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|G Chain G, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|H Chain H, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|I Chain I, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|J Chain J, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|K Chain K, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|L Chain L, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
Length = 153
Score = 33.1 bits (74), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 29 PVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69
P+ G L+ KRVV+VDD G T ++ +K+ GAKE+ +
Sbjct: 76 PIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKI 116
>pdb|3DAH|A Chain A, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|B Chain B, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|C Chain C, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
Length = 319
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 30 VTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSS 89
+ G +EG+ V++DD + T K ++LKE GAK+V P + + +
Sbjct: 210 IIGEVEGRTCVIMDDMVDTAGTLCKAAQVLKERGAKQVFAYATHPVLSGGAADRIAASAL 269
Query: 90 EELI 93
+EL+
Sbjct: 270 DELV 273
>pdb|1DKR|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKR|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1IBS|A Chain A, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
pdb|1IBS|B Chain B, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
Length = 317
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 30 VTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSS 89
+ G +EGK +++DD I T + L E GAKEV+ P + ++ +
Sbjct: 211 IVGNIEGKTAILIDDIIDTAGTITLAANALVENGAKEVYACCTHPVLSGPAVERINNSTI 270
Query: 90 EELI 93
+EL+
Sbjct: 271 KELV 274
>pdb|1VAE|A Chain A, Solution Structure Of The Pdz Domain Of Mouse Rhophilin-2
Length = 111
Score = 30.4 bits (67), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 30 VTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSS 89
+ G EG +V + + T S++++LLK G +EV M++ S S + PSS
Sbjct: 51 LAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSLLDSTSSMHNKSGPSS 110
>pdb|1O5O|A Chain A, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
pdb|1O5O|B Chain B, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
pdb|1O5O|C Chain C, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
pdb|1O5O|D Chain D, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
Length = 221
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 26 KLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM--RIASP 74
KL P+ + K V ++D + G +S K + +LKE GAK++ + IA+P
Sbjct: 129 KLPPLN---DDKEVFLLDPMLATGVSSIKAIEILKENGAKKITLVALIAAP 176
>pdb|1QK5|A Chain A, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase With Xmp, Pyrophosphate And
Two Mg2+ Ions
pdb|1QK5|B Chain B, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase With Xmp, Pyrophosphate And
Two Mg2+ Ions
Length = 233
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 6 YEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAK 65
+EH ++ Q G LS + K V++V+D + G T ++ LK G K
Sbjct: 112 FEHYVRLKSYQNDNSTGQLTVLSDDLSIFRDKHVLIVEDIVATGFTLTEFGERLKAVGPK 171
Query: 66 EVHMRIAS 73
MRIA+
Sbjct: 172 S--MRIAT 177
>pdb|2P1Z|A Chain A, Crystal Structure Of Phosphoribosyltransferase From
Corynebacterium Diphtheriae
pdb|2P1Z|B Chain B, Crystal Structure Of Phosphoribosyltransferase From
Corynebacterium Diphtheriae
Length = 180
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 36 GKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEV 67
GK+V+VV+D+ G + V+ L+EAGA+ V
Sbjct: 114 GKKVLVVEDTTTTGNSPLTAVKALREAGAEVV 145
>pdb|2D92|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Inad-Like
Protein
Length = 108
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPP 75
G+L G R+V V++ + T+ ++ V +LK VH+ I S P
Sbjct: 62 GLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSGP 105
>pdb|3TOZ|A Chain A, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|B Chain B, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|C Chain C, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|D Chain D, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|E Chain E, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|F Chain F, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|G Chain G, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|H Chain H, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TNL|A Chain A, 1.45 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Shikimate And Nad.
pdb|3TNL|B Chain B, 1.45 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Shikimate And Nad.
pdb|3TNL|C Chain C, 1.45 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Shikimate And Nad.
pdb|3TNL|D Chain D, 1.45 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Shikimate And Nad
Length = 315
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 26 KLSPVTGVLEGKRVVVVDDSIVRG--TTSSKIVRLLKEAG 63
KLSP ++ VV DD ++ G T + +R LKEAG
Sbjct: 110 KLSPAAELVGAVNTVVNDDGVLTGHITDGTGYMRALKEAG 149
>pdb|1QK3|A Chain A, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Gmp Complex
pdb|1QK3|B Chain B, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Gmp Complex
pdb|1QK3|C Chain C, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Gmp Complex
pdb|1QK3|D Chain D, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Gmp Complex
pdb|1QK4|A Chain A, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Imp Complex
pdb|1QK4|B Chain B, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Imp Complex
pdb|1QK4|C Chain C, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Imp Complex
pdb|1QK4|D Chain D, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Imp Complex
pdb|1FSG|A Chain A, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Complexed With 9-Deazaguanine,
Alpha-D-5-Phosphoribosyl-1- Pyrophosphate (Prpp) And Two
Mg2+ Ions
pdb|1FSG|C Chain C, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Complexed With 9-Deazaguanine,
Alpha-D-5-Phosphoribosyl-1- Pyrophosphate (Prpp) And Two
Mg2+ Ions
Length = 233
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 6 YEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAK 65
+EH ++ Q G LS + K V++V+D + G T ++ LK G K
Sbjct: 112 FEHYVRLKSYQNDNSTGQLTVLSDDLSIFRDKHVLIVEDIVDTGFTLTEFGERLKAVGPK 171
Query: 66 EVHMRIAS 73
MRIA+
Sbjct: 172 S--MRIAT 177
>pdb|1DBR|A Chain A, Hypoxanthine Guanine Xanthine
pdb|1DBR|B Chain B, Hypoxanthine Guanine Xanthine
pdb|1DBR|C Chain C, Hypoxanthine Guanine Xanthine
pdb|1DBR|D Chain D, Hypoxanthine Guanine Xanthine
Length = 231
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 6 YEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAK 65
+EH ++ Q G LS + K V++V+D + G T ++ LK G K
Sbjct: 109 FEHYVRLKSYQNDNSTGQLTVLSDDLSIFRDKHVLIVEDIVDTGFTLTEFGERLKAVGPK 168
Query: 66 EVHMRIAS 73
MRIA+
Sbjct: 169 S--MRIAT 174
>pdb|3M3H|A Chain A, 1.75 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor'
pdb|3OSC|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
pdb|3OSC|B Chain B, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
pdb|3OSC|C Chain C, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
Length = 234
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAG 63
+G++VVVV+D I G ++ V L+EAG
Sbjct: 136 KGQKVVVVEDLISTGGSAITCVEALREAG 164
>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna
2700099c19
Length = 104
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 31 TGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRI 71
G+ EG +V+ V+D + SK V +LK A+E+ MR+
Sbjct: 57 AGLQEGDQVLAVNDVDFQDIEHSKAVEILKT--AREISMRV 95
>pdb|1MZV|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
(Aprt) From Leishmania Tarentolae
Length = 235
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69
+ RVV++DD + G T+ ++L++ +GA+ V M
Sbjct: 138 KNSRVVLIDDVLATGGTALSGLQLVEASGAEVVEM 172
>pdb|3H83|A Chain A, 2.06 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3H83|B Chain B, 2.06 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3H83|C Chain C, 2.06 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3H83|D Chain D, 2.06 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3HVU|A Chain A, 1.95 Angstrom Crystal Structure Of Complex Of
Hypoxanthine-Guanine Phosphoribosyltransferase From
Bacillus Anthracis With 2-(N- Morpholino)ethanesulfonic
Acid (Mes)
pdb|3HVU|B Chain B, 1.95 Angstrom Crystal Structure Of Complex Of
Hypoxanthine-Guanine Phosphoribosyltransferase From
Bacillus Anthracis With 2-(N- Morpholino)ethanesulfonic
Acid (Mes)
pdb|3HVU|C Chain C, 1.95 Angstrom Crystal Structure Of Complex Of
Hypoxanthine-Guanine Phosphoribosyltransferase From
Bacillus Anthracis With 2-(N- Morpholino)ethanesulfonic
Acid (Mes)
pdb|3HVU|D Chain D, 1.95 Angstrom Crystal Structure Of Complex Of
Hypoxanthine-Guanine Phosphoribosyltransferase From
Bacillus Anthracis With 2-(N- Morpholino)ethanesulfonic
Acid (Mes)
pdb|3KB8|A Chain A, 2.09 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor' In Complex
With Gmp
pdb|3KB8|B Chain B, 2.09 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor' In Complex
With Gmp
pdb|3KB8|C Chain C, 2.09 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor' In Complex
With Gmp
pdb|3KB8|D Chain D, 2.09 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor' In Complex
With Gmp
Length = 204
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 1 MNTTRYEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLK 60
M + Y H T KI L + +EG+ +++V+D I G T S +V L K
Sbjct: 89 MAVSSYGHSTVSTGEVKI--------LKDLDTSVEGRDILIVEDIIDSGLTLSYLVDLFK 140
Query: 61 EAGAKEVHM 69
AK V +
Sbjct: 141 YRKAKSVKI 149
>pdb|2PRY|A Chain A, Apo Form Of S. Cerevisiae Orotate
Phosphoribosyltransferase
pdb|2PRZ|A Chain A, S. Cerevisiae Orotate Phosphoribosyltransferase Complexed
With Omp
pdb|2PRZ|B Chain B, S. Cerevisiae Orotate Phosphoribosyltransferase Complexed
With Omp
pdb|2PRZ|C Chain C, S. Cerevisiae Orotate Phosphoribosyltransferase Complexed
With Omp
pdb|2PRZ|D Chain D, S. Cerevisiae Orotate Phosphoribosyltransferase Complexed
With Omp
pdb|2PS1|A Chain A, S. Cerevisiae Orotate Phosphoribosyltransferase Complexed
With Orotic Acid And Prpp
pdb|2PS1|B Chain B, S. Cerevisiae Orotate Phosphoribosyltransferase Complexed
With Orotic Acid And Prpp
Length = 226
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 30 VTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIA 72
V LE KR++++DD + GT ++ ++ A + V IA
Sbjct: 119 VGSALENKRILIIDDVMTAGTAINEAFEIISNAKGQVVGSIIA 161
>pdb|3QW4|B Chain B, Structure Of Leishmania Donovani Ump Synthase
pdb|3QW4|C Chain C, Structure Of Leishmania Donovani Ump Synthase
Length = 453
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 11 FIEPSQKIRDFGVKLKLSPVTG-VLEGKRVVVVDDSIVRGTTSSKIVRLLKEAG 63
I P ++ + +G K + + G +G RVV++DD + G T + + L+ AG
Sbjct: 342 LIYPRREAKIYGTK---AAIEGEYKKGDRVVIIDDLVSTGETKVEAIEKLRSAG 392
>pdb|2DLS|A Chain A, Solution Structure Of The Pdz Domain Of Human Rho
Guanine Nucleotide Exchange Factor 11
Length = 93
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 16 QKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEA 62
Q +R G +K GV EG R++ V+ ++V ++ ++V+L+K
Sbjct: 34 QSVRPGGAAMK----AGVKEGDRIIKVNGTMVTNSSHLEVVKLIKSG 76
>pdb|2F83|A Chain A, Crystal Structure At 2.9 Angstroms Resolution Of Human
Plasma Coagulation Factor Xi Zymogen
Length = 625
Score = 26.2 bits (56), Expect = 8.6, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 78 ASCYYGVDTPSSEELISNRMSVEEIRE 104
A C+YGV++P + S ++ EI+E
Sbjct: 430 AHCFYGVESPKILRVYSGILNQSEIKE 456
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,471,337
Number of Sequences: 62578
Number of extensions: 163884
Number of successful extensions: 474
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 439
Number of HSP's gapped (non-prelim): 42
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)