Query 045545
Match_columns 158
No_of_seqs 195 out of 2186
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 03:09:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045545.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045545hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0034 PurF Glutamine phospho 100.0 4.5E-37 9.7E-42 267.6 9.9 145 1-145 313-457 (470)
2 PRK06388 amidophosphoribosyltr 100.0 2E-34 4.3E-39 255.2 11.1 153 1-153 321-473 (474)
3 PRK06781 amidophosphoribosyltr 100.0 2.1E-34 4.5E-39 255.0 10.3 144 1-144 313-460 (471)
4 PRK07631 amidophosphoribosyltr 100.0 2.4E-34 5.3E-39 254.7 9.0 147 1-147 313-463 (475)
5 PRK07349 amidophosphoribosyltr 100.0 4.6E-34 9.9E-39 254.2 10.4 146 1-146 342-487 (500)
6 KOG0572 Glutamine phosphoribos 100.0 5.9E-34 1.3E-38 243.7 9.5 145 1-145 321-467 (474)
7 PRK07847 amidophosphoribosyltr 100.0 1.1E-33 2.4E-38 252.2 10.9 145 1-145 332-476 (510)
8 PRK09246 amidophosphoribosyltr 100.0 4E-33 8.7E-38 248.4 9.9 151 1-151 323-477 (501)
9 PRK08341 amidophosphoribosyltr 100.0 1.2E-32 2.5E-37 242.3 10.0 139 1-143 301-439 (442)
10 PRK07272 amidophosphoribosyltr 100.0 9.9E-33 2.1E-37 244.9 9.2 151 1-151 315-472 (484)
11 PLN02440 amidophosphoribosyltr 100.0 2.7E-32 5.9E-37 242.0 10.6 144 1-144 305-448 (479)
12 PRK05793 amidophosphoribosyltr 100.0 2.4E-32 5.2E-37 241.8 8.4 145 1-146 318-462 (469)
13 TIGR01134 purF amidophosphorib 100.0 5.3E-32 1.1E-36 238.1 9.6 140 1-140 303-442 (442)
14 PRK09123 amidophosphoribosyltr 100.0 4.4E-31 9.6E-36 234.3 10.5 145 1-145 325-474 (479)
15 PRK08525 amidophosphoribosyltr 100.0 1.2E-29 2.7E-34 223.3 8.1 141 1-142 305-445 (445)
16 COG0462 PrsA Phosphoribosylpyr 99.7 3.2E-18 7E-23 144.6 7.4 86 15-113 192-278 (314)
17 PF14572 Pribosyl_synth: Phosp 99.7 9.5E-18 2.1E-22 132.6 7.8 72 29-113 76-147 (184)
18 PRK04923 ribose-phosphate pyro 99.7 4.5E-17 9.7E-22 138.5 8.5 86 15-113 196-281 (319)
19 PRK02269 ribose-phosphate pyro 99.7 1.1E-16 2.3E-21 136.1 7.8 80 29-121 210-300 (320)
20 PTZ00145 phosphoribosylpyropho 99.7 1.3E-16 2.8E-21 140.3 8.0 85 16-113 315-399 (439)
21 PRK07199 phosphoribosylpyropho 99.6 4.2E-16 9.2E-21 131.5 8.1 79 30-121 205-287 (301)
22 PRK00553 ribose-phosphate pyro 99.6 5.5E-16 1.2E-20 132.5 8.2 84 29-121 211-305 (332)
23 PLN02297 ribose-phosphate pyro 99.6 1.8E-15 3.8E-20 129.1 7.8 88 16-113 211-300 (326)
24 PRK02458 ribose-phosphate pyro 99.6 1.7E-15 3.8E-20 129.0 7.3 80 29-121 211-300 (323)
25 PRK03092 ribose-phosphate pyro 99.6 4E-15 8.6E-20 125.8 7.3 74 27-113 192-265 (304)
26 PRK00934 ribose-phosphate pyro 99.6 7.5E-15 1.6E-19 122.9 7.8 92 17-121 185-280 (285)
27 PRK06827 phosphoribosylpyropho 99.5 2.8E-14 6.1E-19 124.0 8.0 74 30-113 257-331 (382)
28 PRK01259 ribose-phosphate pyro 99.5 3.8E-14 8.3E-19 120.0 7.5 72 29-113 201-272 (309)
29 KOG1448 Ribose-phosphate pyrop 99.5 3.4E-14 7.3E-19 119.1 6.4 85 16-113 193-278 (316)
30 PRK02812 ribose-phosphate pyro 99.5 3.9E-14 8.4E-19 121.1 6.6 72 29-113 223-294 (330)
31 PLN02369 ribose-phosphate pyro 99.5 5E-14 1.1E-18 119.0 6.9 72 29-113 195-266 (302)
32 TIGR01251 ribP_PPkin ribose-ph 99.4 9.6E-13 2.1E-17 111.2 8.0 75 26-113 200-274 (308)
33 PRK09162 hypoxanthine-guanine 99.2 1.7E-11 3.6E-16 96.5 6.8 58 31-88 92-156 (181)
34 TIGR00201 comF comF family pro 99.2 1.2E-11 2.5E-16 97.7 5.8 56 17-72 133-188 (190)
35 PRK11595 DNA utilization prote 99.1 1.4E-10 3.1E-15 94.0 5.8 55 17-72 169-223 (227)
36 TIGR01203 HGPRTase hypoxanthin 99.1 3.4E-10 7.3E-15 88.0 7.4 69 29-98 77-151 (166)
37 PRK05205 bifunctional pyrimidi 99.1 6E-10 1.3E-14 87.1 7.8 62 29-90 88-155 (176)
38 KOG1503 Phosphoribosylpyrophos 99.1 2.7E-10 5.9E-15 94.0 6.0 71 30-113 241-311 (354)
39 PF00156 Pribosyltran: Phospho 99.0 1.4E-09 3E-14 78.8 5.8 44 29-72 81-124 (125)
40 COG0634 Hpt Hypoxanthine-guani 99.0 2.6E-09 5.7E-14 83.9 7.6 63 26-88 83-151 (178)
41 PLN02238 hypoxanthine phosphor 98.9 2.7E-09 5.8E-14 84.7 7.5 60 29-88 90-160 (189)
42 COG1040 ComFC Predicted amidop 98.9 1.7E-09 3.7E-14 88.0 6.1 56 17-73 165-221 (225)
43 PRK15423 hypoxanthine phosphor 98.9 5.2E-09 1.1E-13 82.5 7.9 60 29-88 85-150 (178)
44 PTZ00149 hypoxanthine phosphor 98.9 6.3E-09 1.4E-13 85.7 6.9 60 29-88 143-208 (241)
45 COG0461 PyrE Orotate phosphori 98.8 1E-08 2.2E-13 82.4 7.7 82 31-135 107-189 (201)
46 PRK13812 orotate phosphoribosy 98.8 1.2E-08 2.7E-13 80.1 7.9 41 32-72 102-143 (176)
47 PTZ00271 hypoxanthine-guanine 98.8 1.3E-08 2.9E-13 82.3 7.3 60 29-88 111-176 (211)
48 PRK13811 orotate phosphoribosy 98.8 2E-08 4.4E-13 78.4 7.5 43 30-72 98-140 (170)
49 PRK13809 orotate phosphoribosy 98.8 2.6E-08 5.7E-13 80.2 7.5 72 33-125 115-187 (206)
50 TIGR01367 pyrE_Therm orotate p 98.8 1.4E-08 3E-13 80.5 5.7 39 34-72 103-141 (187)
51 TIGR01090 apt adenine phosphor 98.7 2.2E-08 4.8E-13 77.7 5.4 40 33-72 106-145 (169)
52 PRK07322 adenine phosphoribosy 98.7 2.5E-08 5.5E-13 78.2 5.7 40 33-72 117-156 (178)
53 PRK02277 orotate phosphoribosy 98.7 3E-08 6.5E-13 79.2 6.2 41 32-72 136-176 (200)
54 PRK00455 pyrE orotate phosphor 98.7 6.9E-08 1.5E-12 76.9 8.1 71 33-124 110-181 (202)
55 PLN02293 adenine phosphoribosy 98.7 6E-08 1.3E-12 77.0 7.0 54 32-94 120-174 (187)
56 PRK06031 phosphoribosyltransfe 98.7 5.6E-08 1.2E-12 79.7 6.9 71 33-115 151-222 (233)
57 PRK02304 adenine phosphoribosy 98.7 4.1E-08 8.8E-13 76.5 5.6 40 33-72 111-150 (175)
58 COG0856 Orotate phosphoribosyl 98.6 7.7E-08 1.7E-12 75.9 5.4 46 27-72 132-177 (203)
59 PRK00129 upp uracil phosphorib 98.6 1.3E-07 2.7E-12 76.0 6.5 56 29-95 117-172 (209)
60 TIGR01091 upp uracil phosphori 98.5 1.5E-07 3.3E-12 75.5 6.1 56 29-95 115-170 (207)
61 TIGR00336 pyrE orotate phospho 98.5 1.9E-07 4.1E-12 72.8 5.6 40 33-72 105-144 (173)
62 PRK12560 adenine phosphoribosy 98.5 2.2E-07 4.8E-12 73.6 5.8 42 31-72 109-150 (187)
63 KOG3367 Hypoxanthine-guanine p 98.5 2.2E-07 4.8E-12 73.3 4.6 87 3-89 83-184 (216)
64 PRK13810 orotate phosphoribosy 98.4 4.3E-07 9.3E-12 72.1 5.6 39 34-72 120-158 (187)
65 TIGR01744 XPRTase xanthine pho 98.4 4.3E-07 9.4E-12 72.3 5.5 38 35-72 116-153 (191)
66 PRK09219 xanthine phosphoribos 98.4 5.3E-07 1.2E-11 71.7 5.4 38 35-72 116-153 (189)
67 PRK05500 bifunctional orotidin 98.3 1.3E-06 2.8E-11 78.2 7.2 71 34-125 391-462 (477)
68 PRK08558 adenine phosphoribosy 98.3 1.3E-06 2.8E-11 71.8 5.6 40 33-72 173-212 (238)
69 COG0503 Apt Adenine/guanine ph 98.2 3.7E-06 8E-11 66.2 5.5 38 35-72 115-152 (179)
70 COG1926 Predicted phosphoribos 98.1 5.4E-06 1.2E-10 67.1 6.0 42 31-72 119-160 (220)
71 TIGR01743 purR_Bsub pur operon 98.1 4.2E-06 9.2E-11 70.0 5.4 39 34-72 192-230 (268)
72 PRK09213 pur operon repressor; 98.1 5.3E-06 1.1E-10 69.5 5.4 38 35-72 195-232 (271)
73 PRK09177 xanthine-guanine phos 98.1 4.9E-06 1.1E-10 64.2 4.7 59 33-96 81-142 (156)
74 COG2065 PyrR Pyrimidine operon 98.1 8.2E-06 1.8E-10 63.9 5.5 61 29-89 89-155 (179)
75 COG2236 Predicted phosphoribos 98.0 1.4E-06 3.1E-11 69.6 1.0 52 34-86 85-136 (192)
76 KOG1712 Adenine phosphoribosyl 97.9 1.6E-05 3.5E-10 62.1 4.7 41 32-72 118-158 (183)
77 PLN02541 uracil phosphoribosyl 97.5 0.00022 4.8E-09 59.0 5.3 42 31-72 151-195 (244)
78 COG0035 Upp Uracil phosphoribo 97.0 0.0016 3.4E-08 52.9 5.4 44 29-72 117-161 (210)
79 PF14681 UPRTase: Uracil phosp 96.8 0.0029 6.2E-08 50.7 5.9 44 29-72 114-159 (207)
80 PF15609 PRTase_2: Phosphoribo 96.3 0.009 2E-07 47.8 5.3 36 35-70 120-155 (191)
81 PF15610 PRTase_3: PRTase ComF 91.7 0.35 7.5E-06 40.8 4.9 39 31-69 133-171 (274)
82 KOG1017 Predicted uracil phosp 90.5 0.65 1.4E-05 38.0 5.3 37 29-65 182-218 (267)
83 PF01488 Shikimate_DH: Shikima 74.4 9.3 0.0002 28.1 5.3 35 32-70 8-42 (135)
84 cd00158 RHOD Rhodanese Homolog 66.5 16 0.00034 23.6 4.5 34 33-69 47-80 (89)
85 smart00450 RHOD Rhodanese Homo 66.2 16 0.00034 23.7 4.6 35 32-69 52-86 (100)
86 COG0462 PrsA Phosphoribosylpyr 62.5 19 0.00041 31.1 5.3 43 29-71 44-90 (314)
87 PF13793 Pribosyltran_N: N-ter 60.6 27 0.00058 25.4 5.2 42 30-71 41-86 (116)
88 cd01444 GlpE_ST GlpE sulfurtra 58.1 21 0.00046 23.7 4.1 32 35-69 55-86 (96)
89 cd01529 4RHOD_Repeats Member o 57.0 24 0.00051 23.8 4.2 32 35-69 55-86 (96)
90 PF04127 DFP: DNA / pantothena 55.4 41 0.0009 26.5 5.8 36 35-70 2-50 (185)
91 TIGR01809 Shik-DH-AROM shikima 50.0 39 0.00085 28.1 5.2 34 33-70 122-155 (282)
92 cd01518 RHOD_YceA Member of th 47.4 45 0.00098 22.6 4.4 33 34-69 59-91 (101)
93 PRK06827 phosphoribosylpyropho 43.9 41 0.0009 29.7 4.6 42 30-72 71-130 (382)
94 PRK02812 ribose-phosphate pyro 42.7 77 0.0017 27.3 6.0 43 30-72 62-108 (330)
95 PF11382 DUF3186: Protein of u 41.8 72 0.0016 27.1 5.6 43 30-72 77-119 (308)
96 PLN02369 ribose-phosphate pyro 41.8 39 0.00085 28.6 4.0 43 30-72 32-78 (302)
97 COG2072 TrkA Predicted flavopr 40.3 61 0.0013 28.8 5.1 42 31-77 170-211 (443)
98 PRK00934 ribose-phosphate pyro 39.9 1E+02 0.0022 25.8 6.1 43 30-72 40-85 (285)
99 PRK01259 ribose-phosphate pyro 39.5 61 0.0013 27.5 4.8 43 30-72 41-87 (309)
100 cd02336 ZZ_RSC8 Zinc finger, Z 39.5 12 0.00027 23.0 0.4 18 128-145 23-41 (45)
101 cd01523 RHOD_Lact_B Member of 38.9 68 0.0015 21.6 4.2 30 35-68 60-89 (100)
102 PRK07199 phosphoribosylpyropho 37.5 93 0.002 26.3 5.6 43 30-72 43-88 (301)
103 PRK03092 ribose-phosphate pyro 37.2 97 0.0021 26.3 5.7 43 30-72 30-76 (304)
104 PF02225 PA: PA domain; Inter 37.2 67 0.0014 21.5 4.0 35 31-70 29-64 (101)
105 PRK00553 ribose-phosphate pyro 36.3 55 0.0012 28.2 4.1 43 30-72 50-96 (332)
106 PF04723 GRDA: Glycine reducta 36.3 62 0.0013 24.9 3.9 36 33-71 2-38 (150)
107 PRK00676 hemA glutamyl-tRNA re 35.8 88 0.0019 27.2 5.3 35 32-70 170-204 (338)
108 cd01525 RHOD_Kc Member of the 35.7 86 0.0019 21.1 4.4 32 35-69 64-95 (105)
109 cd01532 4RHOD_Repeat_1 Member 35.5 77 0.0017 21.2 4.0 32 35-69 49-82 (92)
110 PRK02269 ribose-phosphate pyro 35.4 95 0.0021 26.5 5.4 43 30-72 46-92 (320)
111 PRK00258 aroE shikimate 5-dehy 35.3 96 0.0021 25.5 5.3 35 33-71 120-154 (278)
112 COG0169 AroE Shikimate 5-dehyd 35.1 95 0.0021 26.2 5.3 35 32-70 122-156 (283)
113 cd01519 RHOD_HSP67B2 Member of 34.8 79 0.0017 21.3 4.1 32 35-69 65-96 (106)
114 PTZ00145 phosphoribosylpyropho 34.5 1.2E+02 0.0025 27.5 6.0 43 30-72 160-206 (439)
115 cd01528 RHOD_2 Member of the R 34.2 1E+02 0.0022 20.8 4.5 32 35-69 57-88 (101)
116 cd01524 RHOD_Pyr_redox Member 32.9 1E+02 0.0022 20.4 4.3 31 35-69 50-80 (90)
117 TIGR01251 ribP_PPkin ribose-ph 32.5 97 0.0021 26.1 5.0 43 30-72 41-88 (308)
118 cd04820 PA_M28_1_1 PA_M28_1_1: 32.1 1.1E+02 0.0024 23.1 4.7 39 32-70 46-92 (137)
119 cd01447 Polysulfide_ST Polysul 31.8 63 0.0014 21.6 3.1 32 35-69 60-91 (103)
120 PF02875 Mur_ligase_C: Mur lig 31.3 1.3E+02 0.0029 20.0 4.7 32 38-69 13-45 (91)
121 cd04814 PA_M28_1 PA_M28_1: Pro 31.2 1.2E+02 0.0026 23.0 4.8 39 32-70 44-96 (142)
122 PF00289 CPSase_L_chain: Carba 30.8 1.7E+02 0.0036 21.0 5.3 74 46-137 8-81 (110)
123 PF13738 Pyr_redox_3: Pyridine 30.5 92 0.002 23.3 4.2 34 32-70 163-196 (203)
124 PF07931 CPT: Chloramphenicol 30.2 60 0.0013 25.3 3.1 34 38-73 84-118 (174)
125 PLN02297 ribose-phosphate pyro 29.6 1.4E+02 0.0031 25.7 5.5 41 31-72 61-104 (326)
126 PRK14027 quinate/shikimate deh 28.9 1.2E+02 0.0025 25.4 4.8 34 33-70 124-157 (283)
127 PRK12749 quinate/shikimate deh 28.1 1.4E+02 0.0031 25.0 5.2 35 32-70 120-154 (288)
128 cd01534 4RHOD_Repeat_3 Member 27.8 1.5E+02 0.0032 19.7 4.4 31 35-69 55-85 (95)
129 PRK05320 rhodanese superfamily 27.6 1.1E+02 0.0024 25.2 4.4 33 34-69 173-205 (257)
130 cd01527 RHOD_YgaP Member of th 27.0 1.3E+02 0.0028 20.1 4.0 32 35-69 53-84 (99)
131 PRK12548 shikimate 5-dehydroge 27.0 1.6E+02 0.0035 24.4 5.3 34 33-70 123-156 (289)
132 PF03681 UPF0150: Uncharacteri 26.9 29 0.00062 20.8 0.6 19 44-62 23-41 (48)
133 PRK13940 glutamyl-tRNA reducta 26.4 1.3E+02 0.0028 26.7 4.8 35 32-70 177-211 (414)
134 PRK09620 hypothetical protein; 25.4 1.6E+02 0.0035 23.8 4.9 35 35-69 2-49 (229)
135 PRK02458 ribose-phosphate pyro 25.2 1E+02 0.0022 26.4 3.9 43 30-72 50-96 (323)
136 TIGR02981 phageshock_pspE phag 25.0 1.9E+02 0.0042 20.1 4.7 32 35-69 57-88 (101)
137 cd01449 TST_Repeat_2 Thiosulfa 25.0 1.3E+02 0.0028 20.6 3.9 32 35-69 77-108 (118)
138 COG2185 Sbm Methylmalonyl-CoA 24.9 1.8E+02 0.0039 22.3 4.8 71 38-122 65-136 (143)
139 TIGR03865 PQQ_CXXCW PQQ-depend 24.8 1.6E+02 0.0036 22.3 4.6 33 34-69 114-147 (162)
140 cd02120 PA_subtilisin_like PA_ 24.6 1.7E+02 0.0037 20.5 4.5 35 32-69 48-82 (126)
141 PRK13265 glycine/sarcosine/bet 24.0 1.4E+02 0.003 23.1 3.9 36 33-71 3-39 (154)
142 PF13241 NAD_binding_7: Putati 23.9 1.1E+02 0.0025 21.1 3.3 32 33-69 4-35 (103)
143 cd01522 RHOD_1 Member of the R 23.7 1.6E+02 0.0035 20.6 4.2 32 35-69 63-94 (117)
144 cd04822 PA_M28_1_3 PA_M28_1_3: 23.2 1.9E+02 0.004 22.2 4.6 39 32-70 44-96 (151)
145 cd01533 4RHOD_Repeat_2 Member 23.0 2E+02 0.0042 19.7 4.4 31 35-68 65-96 (109)
146 PRK04923 ribose-phosphate pyro 22.7 2.2E+02 0.0048 24.3 5.4 43 30-72 47-93 (319)
147 PF14502 HTH_41: Helix-turn-he 22.7 99 0.0021 19.4 2.4 22 47-68 18-39 (48)
148 cd01520 RHOD_YbbB Member of th 22.5 1.9E+02 0.0042 20.5 4.5 33 34-69 84-116 (128)
149 PRK12769 putative oxidoreducta 22.2 1.7E+02 0.0038 27.1 5.1 35 34-72 466-500 (654)
150 PRK13982 bifunctional SbtC-lik 22.0 3.1E+02 0.0068 25.0 6.5 39 32-70 252-303 (475)
151 TIGR02801 tolR TolR protein. T 21.9 2.6E+02 0.0056 20.0 5.0 33 37-69 94-126 (129)
152 cd00538 PA PA: Protease-associ 21.7 2E+02 0.0043 19.8 4.3 34 32-69 43-76 (126)
153 PF00581 Rhodanese: Rhodanese- 21.7 2.4E+02 0.0051 18.6 4.6 36 34-69 65-102 (113)
154 PRK11024 colicin uptake protei 21.3 2.7E+02 0.0058 20.5 5.1 32 38-69 105-136 (141)
155 cd04815 PA_M28_2 PA_M28_2: Pro 21.3 1.2E+02 0.0026 22.3 3.2 39 31-70 35-83 (134)
156 cd01080 NAD_bind_m-THF_DH_Cycl 21.1 2.6E+02 0.0057 21.5 5.1 34 31-69 39-73 (168)
157 PRK12549 shikimate 5-dehydroge 20.8 2.1E+02 0.0044 23.8 4.8 34 33-70 124-157 (284)
158 cd04821 PA_M28_1_2 PA_M28_1_2: 20.8 2.3E+02 0.0049 21.8 4.7 39 32-70 46-99 (157)
159 PRK11267 biopolymer transport 20.6 2.8E+02 0.0061 20.5 5.1 35 36-70 99-133 (141)
160 cd01448 TST_Repeat_1 Thiosulfa 20.6 2E+02 0.0042 20.0 4.1 33 35-69 78-110 (122)
161 PLN02160 thiosulfate sulfurtra 20.5 1.9E+02 0.0042 21.1 4.1 32 35-69 80-111 (136)
162 KOG1481 Cysteine synthase [Ami 20.4 1.1E+02 0.0024 26.6 3.1 40 46-85 221-263 (391)
163 PF00185 OTCace: Aspartate/orn 20.4 1.8E+02 0.0039 22.0 4.1 32 35-69 1-32 (158)
No 1
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.5e-37 Score=267.63 Aligned_cols=145 Identities=57% Similarity=0.992 Sum_probs=140.0
Q ss_pred CCCCccccceeeCCChhhhcccCceeeccccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecc
Q 045545 1 MNTTRYEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASC 80 (158)
Q Consensus 1 ~~~n~~~~r~~~~~~~k~R~~~~~~~~~~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~ 80 (158)
++||||+||+|++|+|..|...+++|++++...++||+|+||||.|.+|+|+...+++||++||++||+.+++||+.+||
T Consensus 313 liKNrYvgRTFI~P~q~~R~~~Vr~KLnpvr~~v~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvriasP~i~~Pc 392 (470)
T COG0034 313 LIKNRYVGRTFIMPTQELREKGVRLKLNPVREVVKGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIASPPIRYPC 392 (470)
T ss_pred cccccccceeeeCCcHHHHHhhhhhhcCchHHHhCCCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEecCCCccCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCHHHHHhcCccchhhheeeccCcccccChHHHHHHhcCCCCCcccccccCcCCcCcch
Q 045545 81 YYGVDTPSSEELISNRMSVEEIREFIGCDSLAFLLIDSLNKMLGDDSQNFCYACFSGKYPVKPEE 145 (158)
Q Consensus 81 ~~gi~~~~~~eli~~~~~~~~i~~~i~tdsi~~~sl~~l~~~~~~~~~~~~~~cf~~~y~~~~~~ 145 (158)
+||+++++..|+|+++.+.++|++.||+||+.|+|+++|.++++....++|.+||+|+||+...+
T Consensus 393 ~YGID~pt~~eLIA~~~~~eeI~~~IgaDSL~yLslegL~~aig~~~~~~c~~cFtG~Yp~~~~~ 457 (470)
T COG0034 393 FYGIDMPTREELIAANRTVEEIRKAIGADSLAYLSLEGLIKAIGRDNNDFCLACFTGEYPTGLPD 457 (470)
T ss_pred ccccCCCCHHHHhhCCCCHHHHHHHhCCCceeeecHHHHHHHhCCCccceeeEEecCccccCCcc
Confidence 99999999999999999999999999999999999999999998754689999999999999664
No 2
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=2e-34 Score=255.25 Aligned_cols=153 Identities=45% Similarity=0.805 Sum_probs=142.4
Q ss_pred CCCCccccceeeCCChhhhcccCceeeccccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecc
Q 045545 1 MNTTRYEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASC 80 (158)
Q Consensus 1 ~~~n~~~~r~~~~~~~k~R~~~~~~~~~~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~ 80 (158)
|+||||.+|+|.+++|++|....+.++.++...++||+|+||||++|||+|+.+++++|+++||++|++.+++||+.+||
T Consensus 321 L~r~r~~~r~fi~~~q~~R~~~~~~kl~~~~~~i~gk~VlLVDDsittGtTl~~~~~~L~~aGak~V~~ri~sPpi~~pc 400 (474)
T PRK06388 321 LIKNRYSERTFIMPTQSDRKAAIKLKLNPIREVISGKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRIGSPHIIAPC 400 (474)
T ss_pred eEEecccCCcccCCchhhhhhceeEEeccccccccCceEEEEeCeECcHHHHHHHHHHHHHcCCCEEEEEeCCCCccCCc
Confidence 57999999999999999998888877766667789999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCHHHHHhcCccchhhheeeccCcccccChHHHHHHhcCCCCCcccccccCcCCcCcchhhhhhccc
Q 045545 81 YYGVDTPSSEELISNRMSVEEIREFIGCDSLAFLLIDSLNKMLGDDSQNFCYACFSGKYPVKPEEMKVKRVGE 153 (158)
Q Consensus 81 ~~gi~~~~~~eli~~~~~~~~i~~~i~tdsi~~~sl~~l~~~~~~~~~~~~~~cf~~~y~~~~~~~~~~~~~~ 153 (158)
+||+++++..|||+++.+.++|++.+++|||.|+|+++|.++++....++|++||+|+||+.++.+-+|.+..
T Consensus 401 ~yGid~~~~~eLia~~~~~eei~~~igadsl~yls~~~l~~a~~~~~~~~c~~Cf~g~yp~~~~~~~~~~~~~ 473 (474)
T PRK06388 401 YFGVDMKTKDQFIARGKTDEEINNEIGADSLAFLSIDGLKQAIGIKENNLCLGCLTGIYPIDISKKLAEKITQ 473 (474)
T ss_pred ccCCCCCCHHHHHhcCCCHHHHHHHhCCCeeeccCHHHHHHHhcCCCCCeeeeeCCCCcCCCCCHHHHhhhhc
Confidence 9999999999999999999999999999999999999999999753357999999999999999998887654
No 3
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=2.1e-34 Score=255.02 Aligned_cols=144 Identities=56% Similarity=0.915 Sum_probs=136.0
Q ss_pred CCCCccccceeeCCChhhhcccCceeeccccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecc
Q 045545 1 MNTTRYEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASC 80 (158)
Q Consensus 1 ~~~n~~~~r~~~~~~~k~R~~~~~~~~~~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~ 80 (158)
++||+|.+|+|.++++++|..+.+.+|.++...++||+|+||||++|||+|+.++++.|+++||++|++++++||+.+||
T Consensus 313 lik~~~~~rt~~~~~~~~R~~~v~~~f~~~~~~i~gk~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~v~i~sPpi~~pc 392 (471)
T PRK06781 313 LIKNRYVGRTFIQPSQELREQGVKMKLSAVRGVVEGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIASPPLKYPC 392 (471)
T ss_pred eEEEccCCCCCcCCCHHHHHHHHhcceeccccccCCceEEEEeceeccchHHHHHHHHHHHcCCcEEEEEECCCCccCCc
Confidence 57999999999999999999999989877777899999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCHHHHHhcCccchhhheeeccCcccccChHHHHHHhcCCC----CCcccccccCcCCcCcc
Q 045545 81 YYGVDTPSSEELISNRMSVEEIREFIGCDSLAFLLIDSLNKMLGDDS----QNFCYACFSGKYPVKPE 144 (158)
Q Consensus 81 ~~gi~~~~~~eli~~~~~~~~i~~~i~tdsi~~~sl~~l~~~~~~~~----~~~~~~cf~~~y~~~~~ 144 (158)
+||++.++..++++++.+.++|++.+++|||.|+|+++|.++++... .++|++||+|+||+.++
T Consensus 393 ~yGid~~~~~elia~~~~~eei~~~igadsl~yls~e~l~~a~~~~~~~~~~~~c~~Cf~g~yp~~~~ 460 (471)
T PRK06781 393 FYGIDIQTRKELIAANHTVEEIREMIGADSLTFLSEDGLVDAIGRPYEGKYGGLCMAYFNGDYPTALY 460 (471)
T ss_pred ccccCCCCHHHHHhcCCCHHHHHHHhCCCEEeccCHHHHHHHhcCccCCCCCCcccccCCCcCCCCCC
Confidence 99999999999999999999999999999999999999999997421 35999999999999987
No 4
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=2.4e-34 Score=254.68 Aligned_cols=147 Identities=57% Similarity=0.939 Sum_probs=137.3
Q ss_pred CCCCccccceeeCCChhhhcccCceeeccccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecc
Q 045545 1 MNTTRYEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASC 80 (158)
Q Consensus 1 ~~~n~~~~r~~~~~~~k~R~~~~~~~~~~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~ 80 (158)
++||+|.+|+|.+++|.+|..+.+.++.+....++||+|+||||++|||+|+.+++++|+++||++|++++++||+.+||
T Consensus 313 lik~~~~~Rt~i~~~~~~R~~nv~~~f~~~~~~v~gk~VlLVDDsittGtTl~~~~~~L~~aGA~eV~v~~~sPpi~~pc 392 (475)
T PRK07631 313 LIKNRYVGRTFIQPSQALREQGVKMKLSPVRGVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRISSPPITHPC 392 (475)
T ss_pred eEEEecCCCCCcCCCHHHHHHHHhhhhhhcccccCCceEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEeCCCccCCc
Confidence 57999999999999999999999888877777899999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCHHHHHhcCccchhhheeeccCcccccChHHHHHHhcCC----CCCcccccccCcCCcCcchhh
Q 045545 81 YYGVDTPSSEELISNRMSVEEIREFIGCDSLAFLLIDSLNKMLGDD----SQNFCYACFSGKYPVKPEEMK 147 (158)
Q Consensus 81 ~~gi~~~~~~eli~~~~~~~~i~~~i~tdsi~~~sl~~l~~~~~~~----~~~~~~~cf~~~y~~~~~~~~ 147 (158)
+||+++++..|+|+++.+.++|++.+++||+.|+|+++|.++++.. ..++|++||+|+||+.+++..
T Consensus 393 ~yGid~~~~~eLia~~~~~eei~~~igadsl~yls~e~l~~a~~~~~~~~~~~~c~~Cf~g~yp~~~~~~~ 463 (475)
T PRK07631 393 FYGIDTSTKEELIASNHSVEEIRQLIGADSLAFLSQEGLLEGIGRPYESPNCGQCLACFTGQYPTEIYQDT 463 (475)
T ss_pred ccCCCCCCHHHHhhcCCCHHHHHHHhCCCeEeccCHHHHHHHhccccCCCCCCcccccCCCcccCCCchhh
Confidence 9999999999999999999999999999999999999999999742 135999999999999877654
No 5
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=4.6e-34 Score=254.19 Aligned_cols=146 Identities=51% Similarity=0.937 Sum_probs=137.2
Q ss_pred CCCCccccceeeCCChhhhcccCceeeccccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecc
Q 045545 1 MNTTRYEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASC 80 (158)
Q Consensus 1 ~~~n~~~~r~~~~~~~k~R~~~~~~~~~~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~ 80 (158)
|+||+|.||+|++|.|..|.++.+.++.++...++||+|+||||++|||+|+.+++++|+++||++|++.+++||+.+||
T Consensus 342 L~r~~y~grtfi~p~q~~R~~~~~~kl~~~~~~~~gkrVlLVDDvIttGtTl~~~~~~Lr~aGAkeV~~~i~sPp~~~pc 421 (500)
T PRK07349 342 LIKNRYVGRTFIQPTQSMRESGIRMKLNPLKDVLAGKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMRISSPPVTHPC 421 (500)
T ss_pred eEEEeccCccccCCCHHHHHhhhheeeeccccccCCCEEEEEeceeCCcHHHHHHHHHHHHhCCeEEEEEeCCCcccccc
Confidence 57999999999999999999999888877778889999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCHHHHHhcCccchhhheeeccCcccccChHHHHHHhcCCCCCcccccccCcCCcCcchh
Q 045545 81 YYGVDTPSSEELISNRMSVEEIREFIGCDSLAFLLIDSLNKMLGDDSQNFCYACFSGKYPVKPEEM 146 (158)
Q Consensus 81 ~~gi~~~~~~eli~~~~~~~~i~~~i~tdsi~~~sl~~l~~~~~~~~~~~~~~cf~~~y~~~~~~~ 146 (158)
+||+++++..|||+++.+.++|++.+++|||.|+|+++|.++++....++|++||+|+||+.+++.
T Consensus 422 ~ygid~~~~~eLia~~~~~eei~~~igadsl~yls~e~l~~a~~~~~~~~c~~Cf~g~yp~~~~~~ 487 (500)
T PRK07349 422 FYGIDTDTQDQLIAATKSVEEIAEQIGVDSLAYLSWEGMLEATGEDPNSFCSACFTGDYPIPIPEQ 487 (500)
T ss_pred cccCCCCCHHHHhhcCCCHHHHHHHhCCCeEeccCHHHHHHHhcCCCCCeecccCCCcccCCCccc
Confidence 999999999999999999999999999999999999999999974335699999999999988643
No 6
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=100.00 E-value=5.9e-34 Score=243.66 Aligned_cols=145 Identities=59% Similarity=1.000 Sum_probs=136.2
Q ss_pred CCCCccccceeeCCChhhhcccCceeeccccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecc
Q 045545 1 MNTTRYEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASC 80 (158)
Q Consensus 1 ~~~n~~~~r~~~~~~~k~R~~~~~~~~~~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~ 80 (158)
++||||+||+|++|+|+.|..+++.++.++...++||+|+||||.|..|+|+...+++||++||++||+.+++||+.+||
T Consensus 321 l~rnrYvGRTFI~P~q~iR~~~V~~Kl~~l~~~~~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh~riAsPpi~~pc 400 (474)
T KOG0572|consen 321 LIRNRYVGRTFIEPNQRIRQLGVKKKLGPLRQNFEGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHIRIASPPIKYPC 400 (474)
T ss_pred hhhcccccceecCccHHHHHhhhhhhcccchhhcCCceEEEEecceeccCchHHHHHHHHHcCCcEEEEEecCCcccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCHHHHHhcCccchhhheeeccCcccccChHHHHHHhcC--CCCCcccccccCcCCcCcch
Q 045545 81 YYGVDTPSSEELISNRMSVEEIREFIGCDSLAFLLIDSLNKMLGD--DSQNFCYACFSGKYPVKPEE 145 (158)
Q Consensus 81 ~~gi~~~~~~eli~~~~~~~~i~~~i~tdsi~~~sl~~l~~~~~~--~~~~~~~~cf~~~y~~~~~~ 145 (158)
+||++.++..|+|+++.+.++|++.+|+|++.|+|+++|+..++. ..+.+|++||+|+||-.+.|
T Consensus 401 ~yGIdipt~keLIA~~~t~deiae~igadsv~ylsve~Lv~~~~~~~~~~~~c~acfTG~Ypg~~~e 467 (474)
T KOG0572|consen 401 YYGIDIPTSKELIANKLTVDEIAEHIGADSVAYLSVEGLVDSVQTEDSTKSFCTACFTGKYPGVPTE 467 (474)
T ss_pred eeecCCCCHHHHHhcCCCHHHHHHHhCCCeeEEeeHHHHHHhhcchhcCcceeeEEecccCCCCchh
Confidence 999999999999999999999999999999999999999998863 22259999999999944333
No 7
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.1e-33 Score=252.24 Aligned_cols=145 Identities=49% Similarity=0.888 Sum_probs=135.6
Q ss_pred CCCCccccceeeCCChhhhcccCceeeccccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecc
Q 045545 1 MNTTRYEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASC 80 (158)
Q Consensus 1 ~~~n~~~~r~~~~~~~k~R~~~~~~~~~~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~ 80 (158)
++||+|++|+|+++.|..|.+..+.+.+++...++||+||||||+++||+|+.++++.|+++||++|++.+++||+.+||
T Consensus 332 l~kn~~~grtfi~~~q~~r~~~~r~k~~~~~~~~~gk~vllVDD~ittG~T~~~~~~~L~~~ga~~v~~ri~sPpi~~pc 411 (510)
T PRK07847 332 LVKNAYVGRTFIQPSQTIRQLGIRLKLNPLREVIRGKRLVVVDDSIVRGNTQRALVRMLREAGAAEVHVRISSPPVKWPC 411 (510)
T ss_pred eEeecccccCccCcchhhhhhceeeecCccccccCCCEEEEEecccCchHHHHHHHHHHHHcCCCEEEEEECCCCcCCCC
Confidence 57999999999999999998888877777766789999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCHHHHHhcCccchhhheeeccCcccccChHHHHHHhcCCCCCcccccccCcCCcCcch
Q 045545 81 YYGVDTPSSEELISNRMSVEEIREFIGCDSLAFLLIDSLNKMLGDDSQNFCYACFSGKYPVKPEE 145 (158)
Q Consensus 81 ~~gi~~~~~~eli~~~~~~~~i~~~i~tdsi~~~sl~~l~~~~~~~~~~~~~~cf~~~y~~~~~~ 145 (158)
+||++.++..|||+++.+.++|++.+|+|||.|+|+++|.++++....++|++||+|+||+.+++
T Consensus 412 ~yGid~~~~~eLia~~~~~eei~~~igadsl~yls~e~l~~a~~~~~~~~c~~Cf~g~yp~~~~~ 476 (510)
T PRK07847 412 FYGIDFASRAELIANGLTVEEIRRSIGADSLGYISLDGMIAATEQPASRLCTACFDGVYPIELPD 476 (510)
T ss_pred cCcCCCCCHHHHHhcCCCHHHHHHHhCCCeEeccCHHHHHHHhcCCCCCeecccCCCcccCCCCc
Confidence 99999999999999999999999999999999999999999997432579999999999998864
No 8
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=4e-33 Score=248.44 Aligned_cols=151 Identities=39% Similarity=0.667 Sum_probs=136.9
Q ss_pred CCCCccccceeeCCChhhhcccCceeeccccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecc
Q 045545 1 MNTTRYEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASC 80 (158)
Q Consensus 1 ~~~n~~~~r~~~~~~~k~R~~~~~~~~~~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~ 80 (158)
++||+|.+|+|++++|++|.++.+.++.+....++||+|+||||++|||+|+.++++.|+++||++|++++++||+++||
T Consensus 323 l~k~~~~~rt~i~~~q~~R~~~vr~~f~~~~~~v~gK~VlLVDDvitTGaTl~~~~~~L~~aGA~~V~v~v~ap~i~~pc 402 (501)
T PRK09246 323 FVKNRYVGRTFIMPGQAQRKKSVRQKLNAIRAEFKGKNVLLVDDSIVRGTTSEQIVQMAREAGAKKVYFASAAPPVRFPN 402 (501)
T ss_pred EEEEecccccccCcCHHHHHHHHHhhcCCccccccCCeEEEEeccccccHHHHHHHHHHHHcCCCEEEEEEEccccccCc
Confidence 47899999999999999999888888876667899999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCHHHHHhcCccchhhheeeccCcccccChHHHHHHhcCCC---CCcccccccCcCCcCc-chhhhhhc
Q 045545 81 YYGVDTPSSEELISNRMSVEEIREFIGCDSLAFLLIDSLNKMLGDDS---QNFCYACFSGKYPVKP-EEMKVKRV 151 (158)
Q Consensus 81 ~~gi~~~~~~eli~~~~~~~~i~~~i~tdsi~~~sl~~l~~~~~~~~---~~~~~~cf~~~y~~~~-~~~~~~~~ 151 (158)
+||+++++..|+|+++.+.++|++.+++||+.|+|+++|.++++... .++|++||+|+||++. ++.+.++|
T Consensus 403 ~ygid~~~~~eLia~~~~~e~i~~~ig~dsl~yls~~~l~~a~~~~~~~~~~~c~~cf~g~yp~~~~~~~~~~~~ 477 (501)
T PRK09246 403 VYGIDMPTANELIAHGRTVEEIRQIIGADGLIYQDLEDLIEAVREGNPDIKQFECSCFDGEYVTGDIDQEYLDRL 477 (501)
T ss_pred ccccCCCCHHHHhhcCCCHHHHHHHhCCCeEeecCHHHHHHHhccCCCccCCccccCCCCcccCCCcchHHHHHH
Confidence 99999999999999999999999999999999999999999997321 3699999999999972 34444444
No 9
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.98 E-value=1.2e-32 Score=242.28 Aligned_cols=139 Identities=55% Similarity=0.936 Sum_probs=129.7
Q ss_pred CCCCccccceeeCCChhhhcccCceeeccccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecc
Q 045545 1 MNTTRYEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASC 80 (158)
Q Consensus 1 ~~~n~~~~r~~~~~~~k~R~~~~~~~~~~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~ 80 (158)
++||||.+|+|++++| |......++.++...++||+|+||||++|||+|+.++++.|+++||++|++.+++||+.+||
T Consensus 301 l~k~r~~~rtfi~~~q--r~~~~~~k~~~~~~~v~gk~VlLVDD~IttGtTl~~~~~~L~~aGAk~V~~~~~spp~~~pc 378 (442)
T PRK08341 301 LIKNRYIGRTFIMPSG--RELKVKLKLSPVREVINGKRVVLVDDSIVRGTTMKRIVKMLRDAGAREVHVRIASPPIRYPC 378 (442)
T ss_pred EEEeccccccccCcCc--hhhhheeeecccccccCCCEEEEEeeeeccHHHHHHHHHHHHhcCCcEEEEEEcCCCccCCC
Confidence 5799999999999987 65666677777778899999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCHHHHHhcCccchhhheeeccCcccccChHHHHHHhcCCCCCcccccccCcCCcCc
Q 045545 81 YYGVDTPSSEELISNRMSVEEIREFIGCDSLAFLLIDSLNKMLGDDSQNFCYACFSGKYPVKP 143 (158)
Q Consensus 81 ~~gi~~~~~~eli~~~~~~~~i~~~i~tdsi~~~sl~~l~~~~~~~~~~~~~~cf~~~y~~~~ 143 (158)
+||++.++..++++...+.++|++.+++||+.|+|+++|.++++. .++|++||+|+||+..
T Consensus 379 ~~gid~~~~~~lia~~~~~eei~~~ig~dsl~~ls~e~l~~~~~~--~~~c~~cf~g~yp~~~ 439 (442)
T PRK08341 379 YMGIDIPTRHELIAAWGSVEDIRKEIGADSLAYLSVEGLKRAVGT--EDLCMACLTGEYPEWA 439 (442)
T ss_pred ceeeecCCHHHHhhcCCCHHHHHHHhCCCEEeccCHHHHHHHhCC--CCeeeeeCCCCcceee
Confidence 999999999999999999999999999999999999999999984 5799999999999753
No 10
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.98 E-value=9.9e-33 Score=244.91 Aligned_cols=151 Identities=52% Similarity=0.848 Sum_probs=138.2
Q ss_pred CCCCccccceeeCCChhhhcccCceeeccccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecc
Q 045545 1 MNTTRYEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASC 80 (158)
Q Consensus 1 ~~~n~~~~r~~~~~~~k~R~~~~~~~~~~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~ 80 (158)
++||+|.+|+|.+++|++|.++.+.+|.+....++||+|+||||++|||+|+.++++.|+++||++|+++++|||+..||
T Consensus 315 lvk~~~~~rt~~~~~q~~R~~~vr~~f~~~~~~~~gk~vllVDDvittG~T~~~~~~~L~~~Ga~~v~~~~~~p~~~~~c 394 (484)
T PRK07272 315 LVKNQYVARTFIQPTQELREQGVRMKLSAVSGVVKGKRVVMVDDSIVRGTTSRRIVQLLKEAGAKEVHVAIASPELKYPC 394 (484)
T ss_pred eEEEccCCccccCCCHHHHHHHHhhCccccccccCCCEEEEEccccCchHHHHHHHHHHHhcCCcEEEEEEeCCccccCh
Confidence 47899999999999999999999888877678899999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCHHHHHhcCccchhhheeeccCcccccChHHHHHHhcCC----CCCcccccccCcCCcCcc---hhhhhhc
Q 045545 81 YYGVDTPSSEELISNRMSVEEIREFIGCDSLAFLLIDSLNKMLGDD----SQNFCYACFSGKYPVKPE---EMKVKRV 151 (158)
Q Consensus 81 ~~gi~~~~~~eli~~~~~~~~i~~~i~tdsi~~~sl~~l~~~~~~~----~~~~~~~cf~~~y~~~~~---~~~~~~~ 151 (158)
+||++.++..++++...+.++|++.++.||+.|+|+++|.++++.. ..++|++||+|+||++++ +.+.++|
T Consensus 395 ~ygid~~~~~~lia~~~~~~ei~~~~~~dsl~~~~~~~l~~~~~~~~~~~~~~~c~~Cf~g~yp~~~~~~~~~~~~~~ 472 (484)
T PRK07272 395 FYGIDIQTRRELISANHSVEEICDIIGADSLTYLSVDGLIESIGLDTDAPNGGLCVAYFDGDYPTPLYDYEEEYLRSL 472 (484)
T ss_pred hhhccCcCHHHHHhcCCCHHHHHHHhCCCEEEEecHHHHHHHhCCCCCCCCCCeeceeCCCcccCCCCccccHHHHHH
Confidence 9999999999999999999999999999999999999999999732 135999999999999976 3444444
No 11
>PLN02440 amidophosphoribosyltransferase
Probab=99.97 E-value=2.7e-32 Score=241.98 Aligned_cols=144 Identities=80% Similarity=1.251 Sum_probs=134.4
Q ss_pred CCCCccccceeeCCChhhhcccCceeeccccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecc
Q 045545 1 MNTTRYEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASC 80 (158)
Q Consensus 1 ~~~n~~~~r~~~~~~~k~R~~~~~~~~~~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~ 80 (158)
++||+|.+|+|++|+|+.|....++++.+....++||+|+||||++|||+|+.++++.|+++||++|++++++||++.||
T Consensus 305 lvr~ry~~rt~i~~~q~~r~~~~~~k~~~~~~~v~gk~VlLVDDiittGtTl~~i~~~L~~aGa~~V~v~v~~p~~~~p~ 384 (479)
T PLN02440 305 LIRSHYVGRTFIEPSQKIRDFSVKLKLNPVRSVLEGKRVVVVDDSIVRGTTSSKIVRMLREAGAKEVHMRIASPPIIASC 384 (479)
T ss_pred eEEEeeccccccCcchhhhhhhheeeeecccccccCceEEEEeceeCcHHHHHHHHHHHHhcCCCEEEEEEECCcccccc
Confidence 47899999999999999998877877766667799999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCHHHHHhcCccchhhheeeccCcccccChHHHHHHhcCCCCCcccccccCcCCcCcc
Q 045545 81 YYGVDTPSSEELISNRMSVEEIREFIGCDSLAFLLIDSLNKMLGDDSQNFCYACFSGKYPVKPE 144 (158)
Q Consensus 81 ~~gi~~~~~~eli~~~~~~~~i~~~i~tdsi~~~sl~~l~~~~~~~~~~~~~~cf~~~y~~~~~ 144 (158)
+||++.++..+++..+++.++|++.+++||+.|+|+++|.++++....++|++||+|+||++++
T Consensus 385 ~~G~d~p~~~~li~~~~~~~ei~~~~~~dsl~~l~~~~l~~~~~~~~~~~c~~cf~g~yp~~~~ 448 (479)
T PLN02440 385 YYGVDTPSREELISNRMSVEEIRKFIGCDSLAFLPLEDLKKSLGEESPRFCYACFSGDYPVLPK 448 (479)
T ss_pred eeeccCCCHHHHhhcCCCHHHHHHHhCCCEEEEecHHHHHHHHcCCCCCeeeeeCCCCccCCCc
Confidence 9999999999999999999999999999999999999999999753357999999999999876
No 12
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.97 E-value=2.4e-32 Score=241.81 Aligned_cols=145 Identities=53% Similarity=0.936 Sum_probs=135.3
Q ss_pred CCCCccccceeeCCChhhhcccCceeeccccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecc
Q 045545 1 MNTTRYEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASC 80 (158)
Q Consensus 1 ~~~n~~~~r~~~~~~~k~R~~~~~~~~~~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~ 80 (158)
++||+|.+|+|++++|+.|.+..+.++.+..+.++||+|+||||+++||+|+.++++.|+++||++|+++++|||+..||
T Consensus 318 l~r~~~~~rtfi~~~q~~R~~~~~~k~~~~~~~v~gk~VlLVDD~ItTGtTl~~~~~~Lr~aGAk~V~~~~~~p~~~~p~ 397 (469)
T PRK05793 318 FIKNKYVGRTFIAPSQELRERAVRVKLNPLKVNVEGKRVVLIDDSIVRGTTSKRLVELLRKAGAKEVHFRVSSPPVKYPC 397 (469)
T ss_pred EEEeeeccccccChhHhhhhhhheEecccCccccCCCEEEEEccccCchHHHHHHHHHHHHcCCCEEEEEEECCCcCcch
Confidence 46899999999999999998888777777778899999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCHHHHHhcCccchhhheeeccCcccccChHHHHHHhcCCCCCcccccccCcCCcCcchh
Q 045545 81 YYGVDTPSSEELISNRMSVEEIREFIGCDSLAFLLIDSLNKMLGDDSQNFCYACFSGKYPVKPEEM 146 (158)
Q Consensus 81 ~~gi~~~~~~eli~~~~~~~~i~~~i~tdsi~~~sl~~l~~~~~~~~~~~~~~cf~~~y~~~~~~~ 146 (158)
+||++.++..+++.++.+.++|++.+|+|||.|+|+++|.++++.. .++|++||+|+||+++++.
T Consensus 398 ~~gid~~~~~elia~~~~~~ei~~~~g~dsl~~ls~~~l~~a~~~~-~~~c~~cf~g~yp~~~~~~ 462 (469)
T PRK05793 398 YFGIDTPYRKELIGANMSVEEIREMIGADSLGYLSIEGLLESLNGD-KGFCLGCFNGVYPVSAPKE 462 (469)
T ss_pred hhhccCCChhhEEEcCCCHHHHHHHhCCCeEeccCHHHHHHHhcCC-CCeeeeeCCCcccCCCccc
Confidence 9999999999999999999999999999999999999999999632 5699999999999998743
No 13
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.97 E-value=5.3e-32 Score=238.09 Aligned_cols=140 Identities=56% Similarity=0.996 Sum_probs=131.9
Q ss_pred CCCCccccceeeCCChhhhcccCceeeccccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecc
Q 045545 1 MNTTRYEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASC 80 (158)
Q Consensus 1 ~~~n~~~~r~~~~~~~k~R~~~~~~~~~~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~ 80 (158)
++||+|.+|+|++|.|.+|.++.+.++.+....++||+|+||||++|||+|+.++++.|+++||++|++++++||+.+||
T Consensus 303 l~r~~~~~r~~i~~~q~~R~~~v~~k~~~~~~~~~gk~v~lvDD~ittG~T~~~~~~~l~~~ga~~v~~~~~spp~~~pc 382 (442)
T TIGR01134 303 LIKNRYVGRTFIMPTQELRELSVRLKLNPIREVFRGKRVVLVDDSIVRGTTSRQIVKMLRDAGAKEVHVRIASPPIRYPC 382 (442)
T ss_pred eEEeccccccccCCCHHHHHHHHhhhcccccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEEccCCccCCc
Confidence 57899999999999999998888888877777899999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCHHHHHhcCccchhhheeeccCcccccChHHHHHHhcCCCCCcccccccCcCC
Q 045545 81 YYGVDTPSSEELISNRMSVEEIREFIGCDSLAFLLIDSLNKMLGDDSQNFCYACFSGKYP 140 (158)
Q Consensus 81 ~~gi~~~~~~eli~~~~~~~~i~~~i~tdsi~~~sl~~l~~~~~~~~~~~~~~cf~~~y~ 140 (158)
+||+++++..|+++.+.+.++|++.++.|++.|+++++|.++++....++|++||+|+||
T Consensus 383 ~yg~d~~~~~el~~~~~~~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~c~~cf~g~yp 442 (442)
T TIGR01134 383 YYGIDMPTREELIANGRTVEEIAKEIGADSLAYLSLEGLKEAIGKKISDLCLACFTGEYP 442 (442)
T ss_pred ccccCCCCHHHHhhcCCCHHHHHHHhCCCEEEEecHHHHHHHhcCCCCCeecccCCCcCC
Confidence 999999999999999999999999999999999999999999985335799999999998
No 14
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.97 E-value=4.4e-31 Score=234.26 Aligned_cols=145 Identities=54% Similarity=0.972 Sum_probs=133.9
Q ss_pred CCCCccccceeeCCChhhhcccCceeeccccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecc
Q 045545 1 MNTTRYEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASC 80 (158)
Q Consensus 1 ~~~n~~~~r~~~~~~~k~R~~~~~~~~~~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~ 80 (158)
++||+|.+|+|++|.|+.|....+.++.+....++||+|+||||+++||+|+.++++.|+++||++|++++++||...+|
T Consensus 325 lir~~y~grt~i~~~q~~r~~~v~~k~~~~~~~~~gk~vvlvDD~i~tG~Tl~~~~~~l~~~Ga~~v~~~~~~p~~~~~~ 404 (479)
T PRK09123 325 IIRNHYVGRTFIQPTQQIRNLGVKLKHNANRAVIEGKRVVLVDDSIVRGTTSRKIVQMLRDAGAKEVHLRIASPPITHPC 404 (479)
T ss_pred EEEEeecCccccccccccccccEEEEecccccccCCCEEEEEeceeCchHHHHHHHHHHHHcCCCEEEEEEcCCCCccce
Confidence 47999999999999999998877777766666689999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCHHHHHhcCccchhhheeeccCcccccChHHHHHHhcCC-----CCCcccccccCcCCcCcch
Q 045545 81 YYGVDTPSSEELISNRMSVEEIREFIGCDSLAFLLIDSLNKMLGDD-----SQNFCYACFSGKYPVKPEE 145 (158)
Q Consensus 81 ~~gi~~~~~~eli~~~~~~~~i~~~i~tdsi~~~sl~~l~~~~~~~-----~~~~~~~cf~~~y~~~~~~ 145 (158)
++|++.++..+++..+.+.++|++.+++|||.|+|+++|.++++.. ..++|++||+|+||+++++
T Consensus 405 ~~gid~~~~~~l~~~~~~~~ei~~~igadsl~yls~~~l~~a~~~~~~~~~~~~~c~~cf~g~yp~~~~~ 474 (479)
T PRK09123 405 FYGIDTPERSKLLAATHSLEEMAEYIGADSLAFLSIDGLYRAVGEEGRNPAAPQYCDACFTGDYPTGLTD 474 (479)
T ss_pred eecCCCCCHHHHHHcCCCHHHHHHHhCCCeEeccCHHHHHHHhcccccCCCCCCccceeCCCCccCCCCc
Confidence 9999999999999999999999999999999999999999999742 2469999999999998753
No 15
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.96 E-value=1.2e-29 Score=223.29 Aligned_cols=141 Identities=58% Similarity=0.973 Sum_probs=126.5
Q ss_pred CCCCccccceeeCCChhhhcccCceeeccccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecc
Q 045545 1 MNTTRYEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASC 80 (158)
Q Consensus 1 ~~~n~~~~r~~~~~~~k~R~~~~~~~~~~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~ 80 (158)
++|+++.+|++..+.|+.|....+.++.+....++||+|+||||++|||+|+.++++.|+++||++|+++++||++..+|
T Consensus 305 l~rk~~~~r~~i~~~qr~rn~~~~~~~~~~~~~v~gK~VlLVDDvitTG~Tl~~a~~~Lr~aGA~~V~v~~~hp~~~~~~ 384 (445)
T PRK08525 305 IVRNHYVGRTFIEPTQEMRNLKVKLKLNPMSKVLEGKRIVVIDDSIVRGTTSKKIVSLLRAAGAKEIHLRIACPEIKFPC 384 (445)
T ss_pred EEEeeccccccCCHHHHHHhhheeEEecccccccCCCeEEEEecccCcHHHHHHHHHHHHhcCCCEEEEEEECCCcCCch
Confidence 46888999999998766665544445445455689999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCHHHHHhcCccchhhheeeccCcccccChHHHHHHhcCCCCCcccccccCcCCcC
Q 045545 81 YYGVDTPSSEELISNRMSVEEIREFIGCDSLAFLLIDSLNKMLGDDSQNFCYACFSGKYPVK 142 (158)
Q Consensus 81 ~~gi~~~~~~eli~~~~~~~~i~~~i~tdsi~~~sl~~l~~~~~~~~~~~~~~cf~~~y~~~ 142 (158)
++|++.+...+++..+.+.++|++.+++|||.|+|+++|.++++.. .++|++||+|+||.+
T Consensus 385 ~~~i~~~~~~~li~~~~~~~ei~~~~~adsl~~ls~~~l~~~~~~~-~~~c~~cf~g~yp~~ 445 (445)
T PRK08525 385 YYGIDTPTFEELISANKSVEEVRKYIGADSLSFLSIDELTRSIGDE-RKYSLASFDGDYFIK 445 (445)
T ss_pred hhhCcCCChhhEEEcCCCHHHHHHHhCCCeEeccCHHHHHHHhCCC-CCeeceecCCcccCC
Confidence 9999999999999999999999999999999999999999999853 579999999999975
No 16
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=99.74 E-value=3.2e-18 Score=144.64 Aligned_cols=86 Identities=35% Similarity=0.412 Sum_probs=77.0
Q ss_pred Chhhhc-ccCceeeccccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecceeeecCCCHHHHH
Q 045545 15 SQKIRD-FGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSSEELI 93 (158)
Q Consensus 15 ~~k~R~-~~~~~~~~~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~~~gi~~~~~~eli 93 (158)
-.|+|. +........+.++++||+|+||||||+||+|+..|++.|+++||++|++ .|+||+|++.+.+++
T Consensus 192 i~K~R~~~~~~v~~~~~~gdV~gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GAk~V~a---------~~tH~vfs~~a~~~l 262 (314)
T COG0462 192 IDKRRDSSPNVVEVMNLIGDVEGKDVVIVDDIIDTGGTIAKAAKALKERGAKKVYA---------AATHGVFSGAALERL 262 (314)
T ss_pred EEEeecCCCCeEEEeecccccCCCEEEEEeccccccHHHHHHHHHHHHCCCCeEEE---------EEEchhhChHHHHHH
Confidence 346774 5556666678899999999999999999999999999999999999996 789999999999999
Q ss_pred hcCccchhhheeeccCcccc
Q 045545 94 SNRMSVEEIREFIGCDSLAF 113 (158)
Q Consensus 94 ~~~~~~~~i~~~i~tdsi~~ 113 (158)
.+ +.++++++|||+|+
T Consensus 263 ~~----~~i~~vivTnTi~~ 278 (314)
T COG0462 263 EA----SAIDEVIVTDTIPL 278 (314)
T ss_pred hc----CCCCEEEEeCCccc
Confidence 87 67999999999997
No 17
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=99.73 E-value=9.5e-18 Score=132.61 Aligned_cols=72 Identities=33% Similarity=0.412 Sum_probs=61.8
Q ss_pred cccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecceeeecCCCHHHHHhcCccchhhheeecc
Q 045545 29 PVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFIGC 108 (158)
Q Consensus 29 ~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~~~gi~~~~~~eli~~~~~~~~i~~~i~t 108 (158)
.+.|+++||.++||||+++||+|+.++++.|+++||.+|++ .++||+|++++.+++.. +.|+++++|
T Consensus 76 ~vVGDV~gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V~~---------~aTHgvfs~~A~~~l~~----s~Id~vvvT 142 (184)
T PF14572_consen 76 NVVGDVKGKICIIVDDIIDTGGTLIKAAELLKERGAKKVYA---------CATHGVFSGDAPERLEE----SPIDEVVVT 142 (184)
T ss_dssp EEES--TTSEEEEEEEEESSTHHHHHHHHHHHHTTESEEEE---------EEEEE---TTHHHHHHH----SSESEEEEE
T ss_pred EEEEEccCCeEeeecccccchHHHHHHHHHHHHcCCCEEEE---------EEeCcccCchHHHHHhh----cCCeEEEEe
Confidence 45799999999999999999999999999999999999996 78999999999999987 799999999
Q ss_pred Ccccc
Q 045545 109 DSLAF 113 (158)
Q Consensus 109 dsi~~ 113 (158)
||||+
T Consensus 143 nTIp~ 147 (184)
T PF14572_consen 143 NTIPQ 147 (184)
T ss_dssp TTS--
T ss_pred ccccC
Confidence 99996
No 18
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.70 E-value=4.5e-17 Score=138.49 Aligned_cols=86 Identities=23% Similarity=0.251 Sum_probs=72.7
Q ss_pred ChhhhcccCceeeccccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecceeeecCCCHHHHHh
Q 045545 15 SQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSSEELIS 94 (158)
Q Consensus 15 ~~k~R~~~~~~~~~~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~~~gi~~~~~~eli~ 94 (158)
..|.|..........+.++++||+|+|||||++||+|+.++++.|+++||++|++ .++||+|++++.+++.
T Consensus 196 ~~K~R~~~~~~~~~~~~gdv~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~---------~~THgvfs~~a~~~l~ 266 (319)
T PRK04923 196 IDKRRPRANVATVMNIIGDVQGKTCVLVDDLVDTAGTLCAAAAALKQRGALKVVA---------YITHPVLSGPAVDNIN 266 (319)
T ss_pred eccccCCCCceEEEecccCCCCCEEEEEecccCchHHHHHHHHHHHHCCCCEEEE---------EEECcccCchHHHHHh
Confidence 3356644333333355789999999999999999999999999999999999997 6899999999999887
Q ss_pred cCccchhhheeeccCcccc
Q 045545 95 NRMSVEEIREFIGCDSLAF 113 (158)
Q Consensus 95 ~~~~~~~i~~~i~tdsi~~ 113 (158)
. +.++++++|||+|+
T Consensus 267 ~----s~i~~iv~Tdtip~ 281 (319)
T PRK04923 267 N----SQLDELVVTDTIPL 281 (319)
T ss_pred h----CCCCEEEEeCCccC
Confidence 6 78999999999974
No 19
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.67 E-value=1.1e-16 Score=136.13 Aligned_cols=80 Identities=28% Similarity=0.377 Sum_probs=71.9
Q ss_pred cccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecceeeecCCCHHHHHhcCccchhhheeecc
Q 045545 29 PVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFIGC 108 (158)
Q Consensus 29 ~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~~~gi~~~~~~eli~~~~~~~~i~~~i~t 108 (158)
.+.++++||+|||||||+|||+|+.++++.|+++||++|++ .++||+|++++.+++.. +.++++++|
T Consensus 210 ~~~gdv~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~---------~~tHglf~~~a~~~l~~----~~i~~iv~T 276 (320)
T PRK02269 210 NIIGNVKGKKCILIDDMIDTAGTICHAADALAEAGATEVYA---------SCTHPVLSGPALDNIQK----SAIEKLVVL 276 (320)
T ss_pred EeccccCCCEEEEEeeecCcHHHHHHHHHHHHHCCCCEEEE---------EEECcccCchHHHHHHh----CCCCEEEEe
Confidence 45688999999999999999999999999999999999997 78999999999999876 789999999
Q ss_pred Ccccc-----------cChHHHHH
Q 045545 109 DSLAF-----------LLIDSLNK 121 (158)
Q Consensus 109 dsi~~-----------~sl~~l~~ 121 (158)
||+|+ +|++++++
T Consensus 277 dti~~~~~~~~~k~~~isva~~la 300 (320)
T PRK02269 277 DTIYLPEERLIDKIEQISIADLLG 300 (320)
T ss_pred CCCCCccccccCCeEEEEhHHHHH
Confidence 99975 56666665
No 20
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.67 E-value=1.3e-16 Score=140.34 Aligned_cols=85 Identities=22% Similarity=0.241 Sum_probs=73.8
Q ss_pred hhhhcccCceeeccccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecceeeecCCCHHHHHhc
Q 045545 16 QKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSSEELISN 95 (158)
Q Consensus 16 ~k~R~~~~~~~~~~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~~~gi~~~~~~eli~~ 95 (158)
.|+|....+.....+.++++||+|||||||++||+|+.++++.|+++||++|++ .++||+|++++.+++..
T Consensus 315 ~K~R~~~~~v~~~~lvgdV~Gk~vIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~~---------~~THglfs~~A~~rl~~ 385 (439)
T PTZ00145 315 IKQRTKPNEIEKMDLVGNVYDSDVIIVDDMIDTSGTLCEAAKQLKKHGARRVFA---------FATHGLFSGPAIERIEA 385 (439)
T ss_pred EeecCCCCceEEEeccCCCCCCEEEEEcceeCcHHHHHHHHHHHHHcCCCEEEE---------EEEcccCChhHHHHHhc
Confidence 366655444433456789999999999999999999999999999999999997 78999999999999976
Q ss_pred CccchhhheeeccCcccc
Q 045545 96 RMSVEEIREFIGCDSLAF 113 (158)
Q Consensus 96 ~~~~~~i~~~i~tdsi~~ 113 (158)
+.++++++|||||+
T Consensus 386 ----s~i~~IvvTdTIp~ 399 (439)
T PTZ00145 386 ----SPLEEVVVTDTVKS 399 (439)
T ss_pred ----CCCCEEEEeCCCcC
Confidence 78999999999874
No 21
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.64 E-value=4.2e-16 Score=131.52 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=71.6
Q ss_pred ccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecceeeecCCCHHHHHhcCccchhhheeeccC
Q 045545 30 VTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFIGCD 109 (158)
Q Consensus 30 ~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~~~gi~~~~~~eli~~~~~~~~i~~~i~td 109 (158)
..++++||+|+||||++|||+|+.++++.|+++||++|++ .++||+|++++.+++.. +.+++++.||
T Consensus 205 ~~~~v~Gr~vIIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~---------~~tHgvfs~~a~~~l~~----~~i~~iv~Td 271 (301)
T PRK07199 205 DAAPWAGRTPVLVDDIVSTGRTLIEAARQLRAAGAASPDC---------VVVHALFAGDAYSALAA----AGIARVVSTD 271 (301)
T ss_pred cCcccCCCEEEEEecccCcHHHHHHHHHHHHHCCCcEEEE---------EEEeeeCChHHHHHHHh----CCCCEEEEeC
Confidence 3467899999999999999999999999999999999997 78999999999999876 6799999999
Q ss_pred cccc----cChHHHHH
Q 045545 110 SLAF----LLIDSLNK 121 (158)
Q Consensus 110 si~~----~sl~~l~~ 121 (158)
|+|+ +|++++++
T Consensus 272 ti~~~~~~~sva~lla 287 (301)
T PRK07199 272 TVPHPSNAISLAPLLA 287 (301)
T ss_pred CccCCCCEEehHHHHH
Confidence 9974 78888876
No 22
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.64 E-value=5.5e-16 Score=132.48 Aligned_cols=84 Identities=24% Similarity=0.303 Sum_probs=72.9
Q ss_pred cccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecceeeecCCCHHHHHhcCccchhhheeecc
Q 045545 29 PVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFIGC 108 (158)
Q Consensus 29 ~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~~~gi~~~~~~eli~~~~~~~~i~~~i~t 108 (158)
.+.++++||+|+||||+++||+|+.++++.|+++||++|++ .++||+|++++.+++...+..+.++++++|
T Consensus 211 ~~~gdv~Gk~VIIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~---------~atHglf~~~a~~~l~~~~~~~~i~~iv~T 281 (332)
T PRK00553 211 NVLGEVKNKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKVCV---------MATHGLFNKNAIQLFDEAFKKKLIDKLFVS 281 (332)
T ss_pred EeeccCCCCEEEEEeccccchHHHHHHHHHHHHcCCcEEEE---------EEEeeecCchHHHHHHhccccCCCCEEEEe
Confidence 45689999999999999999999999999999999999996 789999999999999753334579999999
Q ss_pred Ccccc-----------cChHHHHH
Q 045545 109 DSLAF-----------LLIDSLNK 121 (158)
Q Consensus 109 dsi~~-----------~sl~~l~~ 121 (158)
||+|+ +|++++++
T Consensus 282 ntip~~~~~~~~~~~~vsva~~la 305 (332)
T PRK00553 282 NSIPQTKFEKKPQFKVVDLAHLYE 305 (332)
T ss_pred CCccCcccccCCCeEEEEhHHHHH
Confidence 99974 56666664
No 23
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=99.60 E-value=1.8e-15 Score=129.12 Aligned_cols=88 Identities=25% Similarity=0.218 Sum_probs=72.1
Q ss_pred hhhhcccCceeeccccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecceeeecCCCHHHHHhc
Q 045545 16 QKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSSEELISN 95 (158)
Q Consensus 16 ~k~R~~~~~~~~~~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~~~gi~~~~~~eli~~ 95 (158)
.|.|..... ......++++||+|+|||||++||+|+.++++.|+++|+++|++ .++||+|++++.+++..
T Consensus 211 ~K~R~g~~~-~~~~~~~dv~gr~vlIVDDIidTG~Tl~~aa~~L~~~Ga~~V~~---------~~THglfs~~a~~~l~~ 280 (326)
T PLN02297 211 TKVREGDKR-IVRIKEGNPAGRHVVIVDDLVQSGGTLIECQKVLAAHGAAKVSA---------YVTHGVFPNESWERFTH 280 (326)
T ss_pred EeEECCCce-EEEecccccCCCeEEEEecccCcHHHHHHHHHHHHHCCCcEEEE---------EEECcccChhHHHHHHh
Confidence 355543222 22345689999999999999999999999999999999999997 78999999999998874
Q ss_pred --CccchhhheeeccCcccc
Q 045545 96 --RMSVEEIREFIGCDSLAF 113 (158)
Q Consensus 96 --~~~~~~i~~~i~tdsi~~ 113 (158)
|...+.++++++|||+|+
T Consensus 281 ~~~~~~~~i~~iv~TdTip~ 300 (326)
T PLN02297 281 DNGGPEAGFAYFWITDSCPQ 300 (326)
T ss_pred cccccccCcCEEEEcCCccC
Confidence 222347999999999975
No 24
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.60 E-value=1.7e-15 Score=128.95 Aligned_cols=80 Identities=25% Similarity=0.404 Sum_probs=71.8
Q ss_pred cccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecceeeecCCCHHHHHhcCccchhhheeecc
Q 045545 29 PVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFIGC 108 (158)
Q Consensus 29 ~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~~~gi~~~~~~eli~~~~~~~~i~~~i~t 108 (158)
.+.++++||+|+|||||++||+|+.++++.|+++||++|++ .++||+|++++.+++.. +.++++++|
T Consensus 211 ~i~gdV~gk~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~---------~~tHgif~~~a~~~l~~----s~i~~iv~T 277 (323)
T PRK02458 211 YIIGDVAGKKAILIDDILNTGKTFAEAAKIVEREGATEIYA---------VASHGLFAGGAAEVLEN----APIKEILVT 277 (323)
T ss_pred ccccccCCCEEEEEcceeCcHHHHHHHHHHHHhCCCCcEEE---------EEEChhcCchHHHHHhh----CCCCEEEEE
Confidence 45689999999999999999999999999999999999997 78999999999999887 789999999
Q ss_pred Ccccc----------cChHHHHH
Q 045545 109 DSLAF----------LLIDSLNK 121 (158)
Q Consensus 109 dsi~~----------~sl~~l~~ 121 (158)
||+|+ +|++++++
T Consensus 278 dTi~~~~~~~~k~~~isva~lla 300 (323)
T PRK02458 278 DSVATKERVPKNVTYLSASELIA 300 (323)
T ss_pred CCcCCchhcCCCcEEEEhHHHHH
Confidence 99963 56666664
No 25
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.57 E-value=4e-15 Score=125.77 Aligned_cols=74 Identities=39% Similarity=0.495 Sum_probs=67.4
Q ss_pred eccccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecceeeecCCCHHHHHhcCccchhhheee
Q 045545 27 LSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFI 106 (158)
Q Consensus 27 ~~~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~~~gi~~~~~~eli~~~~~~~~i~~~i 106 (158)
...+.++++||+|+||||+++||+|+.++++.|++.||++|++ .++||++++++.+++.. +.+++++
T Consensus 192 ~~~~~~dv~gr~viIVDDIi~TG~Tl~~aa~~Lk~~Ga~~I~~---------~~tH~v~~~~a~~~l~~----~~~~~i~ 258 (304)
T PRK03092 192 ANRVVGDVEGRTCVLVDDMIDTGGTIAGAVRALKEAGAKDVII---------AATHGVLSGPAAERLKN----CGAREVV 258 (304)
T ss_pred EEecCcCCCCCEEEEEccccCcHHHHHHHHHHHHhcCCCeEEE---------EEEcccCChHHHHHHHH----CCCCEEE
Confidence 3456789999999999999999999999999999999999997 67999999999998876 6799999
Q ss_pred ccCcccc
Q 045545 107 GCDSLAF 113 (158)
Q Consensus 107 ~tdsi~~ 113 (158)
.|||+|+
T Consensus 259 ~t~tip~ 265 (304)
T PRK03092 259 VTDTLPI 265 (304)
T ss_pred Eeeeecc
Confidence 9999975
No 26
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.56 E-value=7.5e-15 Score=122.92 Aligned_cols=92 Identities=29% Similarity=0.387 Sum_probs=74.0
Q ss_pred hhhcccCceeeccccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecceeeecCCCHHHHHhcC
Q 045545 17 KIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSSEELISNR 96 (158)
Q Consensus 17 k~R~~~~~~~~~~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~~~gi~~~~~~eli~~~ 96 (158)
|.|............++++||+|+||||+++||+|+.++++.|+++||++|++ .++||++++++.+++..
T Consensus 185 k~r~~~~~~~~~~~~~~v~Gk~VlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~---------~~~H~i~~~~a~~~l~~- 254 (285)
T PRK00934 185 KTRISPTEVEIAPKNLDVKGKDVLIVDDIISTGGTMATAIKILKEQGAKKVYV---------ACVHPVLVGDAILKLYN- 254 (285)
T ss_pred EEecCCCeEEEeccccccCCCEEEEEcCccccHHHHHHHHHHHHHCCCCEEEE---------EEEeeccCcHHHHHHHh-
Confidence 44433333333334568999999999999999999999999999999999997 67899999999998876
Q ss_pred ccchhhheeeccCcccc----cChHHHHH
Q 045545 97 MSVEEIREFIGCDSLAF----LLIDSLNK 121 (158)
Q Consensus 97 ~~~~~i~~~i~tdsi~~----~sl~~l~~ 121 (158)
..++++++|||+|. +|++++++
T Consensus 255 ---~~i~~i~~tnti~~~~~~~~va~~la 280 (285)
T PRK00934 255 ---AGVDEIIVTDTLESEVSKISVAPLIA 280 (285)
T ss_pred ---CCCCEEEEcCCCCCCceEEEcHHHHH
Confidence 56999999999874 55666554
No 27
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.52 E-value=2.8e-14 Score=123.99 Aligned_cols=74 Identities=27% Similarity=0.383 Sum_probs=65.2
Q ss_pred ccc-cCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecceeeecCCCHHHHHhcCccchhhheeecc
Q 045545 30 VTG-VLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFIGC 108 (158)
Q Consensus 30 ~~~-~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~~~gi~~~~~~eli~~~~~~~~i~~~i~t 108 (158)
..+ +++||+|||||||++||+|+..+++.|+++||++|++ .++||+|+ ++.+.+......+.++++++|
T Consensus 257 ~~g~dV~gr~vIIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~---------~~tH~vf~-~a~~~l~~~~~~g~i~~iv~T 326 (382)
T PRK06827 257 FLGRDVEGKDVLIVDDMIASGGSMIDAAKELKSRGAKKIIV---------AATFGFFT-NGLEKFDKAYEEGYFDRIIGT 326 (382)
T ss_pred cCCcccCCCEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEE---------EEEeecCh-HHHHHHHhhcccCCCCEEEEe
Confidence 345 8999999999999999999999999999999999997 78999999 888888754444569999999
Q ss_pred Ccccc
Q 045545 109 DSLAF 113 (158)
Q Consensus 109 dsi~~ 113 (158)
||+|+
T Consensus 327 dTi~~ 331 (382)
T PRK06827 327 NLVYH 331 (382)
T ss_pred CCCcC
Confidence 99864
No 28
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.51 E-value=3.8e-14 Score=120.02 Aligned_cols=72 Identities=33% Similarity=0.376 Sum_probs=65.9
Q ss_pred cccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecceeeecCCCHHHHHhcCccchhhheeecc
Q 045545 29 PVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFIGC 108 (158)
Q Consensus 29 ~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~~~gi~~~~~~eli~~~~~~~~i~~~i~t 108 (158)
.+.++++||+|+||||+++||+|+.++++.|+++|+++|++ .++||++++++.+++.. +.+++++.|
T Consensus 201 ~~~~~~~g~~vliVDDii~TG~T~~~a~~~l~~~Ga~~v~~---------~~tH~i~~~~a~~~l~~----~~~~~iv~t 267 (309)
T PRK01259 201 NIIGDVEGRDCILVDDMIDTAGTLCKAAEALKERGAKSVYA---------YATHPVLSGGAIERIEN----SVIDELVVT 267 (309)
T ss_pred eecccCCCCEEEEEecccCcHHHHHHHHHHHHccCCCEEEE---------EEEeeeCChHHHHHHhc----CCCCEEEEe
Confidence 45678999999999999999999999999999999999997 67899999999998876 689999999
Q ss_pred Ccccc
Q 045545 109 DSLAF 113 (158)
Q Consensus 109 dsi~~ 113 (158)
||+|+
T Consensus 268 ~ti~~ 272 (309)
T PRK01259 268 DSIPL 272 (309)
T ss_pred cCccc
Confidence 99875
No 29
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=99.50 E-value=3.4e-14 Score=119.10 Aligned_cols=85 Identities=22% Similarity=0.225 Sum_probs=74.6
Q ss_pred hhhhcccCcee-eccccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecceeeecCCCHHHHHh
Q 045545 16 QKIRDFGVKLK-LSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSSEELIS 94 (158)
Q Consensus 16 ~k~R~~~~~~~-~~~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~~~gi~~~~~~eli~ 94 (158)
.++|.+..++. ...+.||++||.++||||+++|++|+..+++.|.+.||++|+. .++||+|++++.+++.
T Consensus 193 ~ker~k~~~v~~~m~LVGDv~gkvailVDDm~dt~GTl~~aa~~L~~~GA~kV~a---------~~THgVfs~~a~er~~ 263 (316)
T KOG1448|consen 193 HKERRKANEVDIRMVLVGDVKGKVAILVDDMADTCGTLIKAADKLLEHGAKKVYA---------IVTHGVFSGPAIERLN 263 (316)
T ss_pred hhhhhcccccceEEEEEeccCCcEEEEecccccccchHHHHHHHHHhcCCceEEE---------EEcceeccccHHHHhh
Confidence 34565554444 4456899999999999999999999999999999999999995 7899999999999998
Q ss_pred cCccchhhheeeccCcccc
Q 045545 95 NRMSVEEIREFIGCDSLAF 113 (158)
Q Consensus 95 ~~~~~~~i~~~i~tdsi~~ 113 (158)
+ +.+.++++||++|+
T Consensus 264 ~----s~~~~~vvtnt~p~ 278 (316)
T KOG1448|consen 264 E----SALDRVVVTNTIPI 278 (316)
T ss_pred h----cccceEEEEEeecc
Confidence 8 68889999999986
No 30
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.49 E-value=3.9e-14 Score=121.05 Aligned_cols=72 Identities=32% Similarity=0.415 Sum_probs=66.1
Q ss_pred cccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecceeeecCCCHHHHHhcCccchhhheeecc
Q 045545 29 PVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFIGC 108 (158)
Q Consensus 29 ~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~~~gi~~~~~~eli~~~~~~~~i~~~i~t 108 (158)
.+.++++||+|+||||+++||+|+.++++.|+++||++|++ .++||++++++.+++.. +.++++++|
T Consensus 223 ~~~~~v~g~~viiVDDii~TG~T~~~a~~~L~~~Ga~~v~~---------~~tH~v~s~~a~~~l~~----~~id~iv~t 289 (330)
T PRK02812 223 NVIGDVKGKTAILVDDMIDTGGTICEGARLLRKEGAKQVYA---------CATHAVFSPPAIERLSS----GLFEEVIVT 289 (330)
T ss_pred eccccCCCCEEEEEccccCcHHHHHHHHHHHhccCCCeEEE---------EEEcccCChHHHHHHhh----CCCCEEEEe
Confidence 45678999999999999999999999999999999999997 67899999999998875 689999999
Q ss_pred Ccccc
Q 045545 109 DSLAF 113 (158)
Q Consensus 109 dsi~~ 113 (158)
||+|+
T Consensus 290 nti~~ 294 (330)
T PRK02812 290 NTIPV 294 (330)
T ss_pred CCCCC
Confidence 99975
No 31
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=99.49 E-value=5e-14 Score=119.01 Aligned_cols=72 Identities=29% Similarity=0.365 Sum_probs=66.2
Q ss_pred cccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecceeeecCCCHHHHHhcCccchhhheeecc
Q 045545 29 PVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFIGC 108 (158)
Q Consensus 29 ~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~~~gi~~~~~~eli~~~~~~~~i~~~i~t 108 (158)
.+.++++||+|+||||+++||+|+.++++.|++.|+++|++ .++||++++++.+++.. +.+++++.|
T Consensus 195 ~~~~~v~g~~viivDDii~TG~Tl~~a~~~l~~~Ga~~v~~---------~~tH~v~~~~a~~~l~~----~~~~~iv~t 261 (302)
T PLN02369 195 NLIGDVKGKVAIMVDDMIDTAGTITKGAALLHQEGAREVYA---------CATHAVFSPPAIERLSS----GLFQEVIVT 261 (302)
T ss_pred ecCCCCCCCEEEEEcCcccchHHHHHHHHHHHhCCCCEEEE---------EEEeeeeCHHHHHHHHh----CCCCEEEEe
Confidence 45678999999999999999999999999999999999997 68999999999998876 679999999
Q ss_pred Ccccc
Q 045545 109 DSLAF 113 (158)
Q Consensus 109 dsi~~ 113 (158)
||+|+
T Consensus 262 ~ti~~ 266 (302)
T PLN02369 262 NTIPV 266 (302)
T ss_pred CCCCC
Confidence 99975
No 32
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=99.39 E-value=9.6e-13 Score=111.24 Aligned_cols=75 Identities=36% Similarity=0.464 Sum_probs=66.3
Q ss_pred eeccccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecceeeecCCCHHHHHhcCccchhhhee
Q 045545 26 KLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIREF 105 (158)
Q Consensus 26 ~~~~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~~~gi~~~~~~eli~~~~~~~~i~~~ 105 (158)
......++++||+|+||||+++||+|+..+++.|+++||++|++ .++|+++.+++.+.+.. ..++++
T Consensus 200 ~~~~~~~~v~g~~vliVDDii~tG~Tl~~a~~~l~~~ga~~v~~---------~~th~v~~~~a~~~l~~----~~~~~i 266 (308)
T TIGR01251 200 EVMNLVGDVEGKDVVIVDDIIDTGGTIAKAAEILKSAGAKRVIA---------AATHGVFSGPAIERIAN----AGVEEV 266 (308)
T ss_pred EEEecccccCCCEEEEEccccCCHHHHHHHHHHHHhcCCCEEEE---------EEEeeecCcHHHHHHHh----CCCCEE
Confidence 33455678999999999999999999999999999999999997 57799999998887776 569999
Q ss_pred eccCcccc
Q 045545 106 IGCDSLAF 113 (158)
Q Consensus 106 i~tdsi~~ 113 (158)
+.|||+|+
T Consensus 267 v~tdt~~~ 274 (308)
T TIGR01251 267 IVTNTIPH 274 (308)
T ss_pred EEeCCCCc
Confidence 99999976
No 33
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.24 E-value=1.7e-11 Score=96.49 Aligned_cols=58 Identities=29% Similarity=0.411 Sum_probs=52.6
Q ss_pred cccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeec-------CCceecceeeecCCC
Q 045545 31 TGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIAS-------PPIIASCYYGVDTPS 88 (158)
Q Consensus 31 ~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~-------~~~~~~~~~gi~~~~ 88 (158)
..+++||+||||||++|||.|+.++++.|+++||++|++++++ |+.+.|+++|+..++
T Consensus 92 ~~~v~gk~VLIVDDIidTG~Tl~~~~~~Lk~~Ga~~V~~avL~~k~~~~~~~~~~pD~~g~~~~~ 156 (181)
T PRK09162 92 RESLKGRTVLVVDDILDEGHTLAAIRDRCLEMGAAEVYSAVLVDKTHDRKAKPLKADFVGLEVPD 156 (181)
T ss_pred CCCCCCCEEEEEccccCcHHHHHHHHHHHHhCCCCEEEEEEEEEcCcccccCCCCCcEEEEEcCC
Confidence 4579999999999999999999999999999999999999996 245679999999976
No 34
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=99.24 E-value=1.2e-11 Score=97.68 Aligned_cols=56 Identities=29% Similarity=0.460 Sum_probs=45.8
Q ss_pred hhhcccCceeeccccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEee
Q 045545 17 KIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 17 k~R~~~~~~~~~~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~ 72 (158)
++|.++.+..|......++||+|+|||||+|||+|+.++++.|+++|+.+|+++++
T Consensus 133 ~~R~~n~~~~f~~~~~~~~~~~vllvDDV~TTGaTl~~~~~~L~~~Ga~~V~~~~l 188 (190)
T TIGR00201 133 TLRFLNLENAFDLKNNSFQGRNIVLVDDVVTTGATLHEIARLLLELGAASVQVWTL 188 (190)
T ss_pred HHHHHHHhCcEEccCCCCCCCEEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEE
Confidence 46655655555332225899999999999999999999999999999999998775
No 35
>PRK11595 DNA utilization protein GntX; Provisional
Probab=99.09 E-value=1.4e-10 Score=94.03 Aligned_cols=55 Identities=25% Similarity=0.440 Sum_probs=45.8
Q ss_pred hhhcccCceeeccccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEee
Q 045545 17 KIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 17 k~R~~~~~~~~~~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~ 72 (158)
++|.++....+ .+.++++|++|+|||||+|||.|+.++++.|+++|+++|+++++
T Consensus 169 ~~R~~n~~~~f-~~~~~~~~~~vllvDDv~tTG~Tl~~~~~~L~~~g~~~V~~~~l 223 (227)
T PRK11595 169 RLRKRNLKNAF-RLELPVQGQHMAIVDDVVTTGSTVAEIAQLLLRNGAASVQVWCL 223 (227)
T ss_pred HHHhhhhhhhh-ccCCCCCCCEEEEEeeeecchHHHHHHHHHHHHcCCcEEEEEEE
Confidence 45555544444 33567899999999999999999999999999999999999876
No 36
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=99.09 E-value=3.4e-10 Score=88.00 Aligned_cols=69 Identities=19% Similarity=0.314 Sum_probs=56.7
Q ss_pred cccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCC------ceecceeeecCCCHHHHHhcCcc
Q 045545 29 PVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPP------IIASCYYGVDTPSSEELISNRMS 98 (158)
Q Consensus 29 ~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~------~~~~~~~gi~~~~~~eli~~~~~ 98 (158)
....+++||+|||||||++||+|+.++++.|++.|+++++++++... .+.|+++|+..++ .+++..|++
T Consensus 77 ~~~~~~~gk~vlivDDii~TG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~~~~~~pDy~g~~v~d-~~vvGyGld 151 (166)
T TIGR01203 77 DLDLSIKGKDVLIVEDIVDTGLTLQYLLDLLKARKPKSLKIVTLLDKPSRRKVDVKVDFVGFEIPD-KFVVGYGLD 151 (166)
T ss_pred CCCCCCCCCEEEEEeeeeCcHHHHHHHHHHHHHCCCCEEEEEEEEecCccCcCCCCCCEEEEEcCC-ceEEEcCcc
Confidence 45668899999999999999999999999999999999999998521 2458999998875 555555543
No 37
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=99.06 E-value=6e-10 Score=87.09 Aligned_cols=62 Identities=29% Similarity=0.427 Sum_probs=52.6
Q ss_pred cccccCCCCEEEEEeccccccHHHHHHHHHHHHcC-CcEEEEEeecC-----CceecceeeecCCCHH
Q 045545 29 PVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAG-AKEVHMRIASP-----PIIASCYYGVDTPSSE 90 (158)
Q Consensus 29 ~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~G-a~~V~v~v~~~-----~~~~~~~~gi~~~~~~ 90 (158)
.+..+++||+|||||||++||+|+..+++.|++.| ++++.++++.. ..+.++|.|+..++..
T Consensus 88 ~l~~~v~gr~VLIVDDIidTG~Tl~~~~~~L~~~G~~~~v~~avL~~K~~~~~~~~~Dyvg~~ip~~~ 155 (176)
T PRK05205 88 DIPFDIEGKRVILVDDVLYTGRTIRAALDALFDYGRPARVQLAVLVDRGHRELPIRADYVGKNIPTSR 155 (176)
T ss_pred cCCCCCCCCEEEEEecccCcHHHHHHHHHHHHhcCCCcEEEEEEEEECCCCcCCCCCCEEEEECCCCC
Confidence 34567999999999999999999999999999998 78998888853 2357889999888654
No 38
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=99.05 E-value=2.7e-10 Score=94.01 Aligned_cols=71 Identities=23% Similarity=0.333 Sum_probs=67.6
Q ss_pred ccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecceeeecCCCHHHHHhcCccchhhheeeccC
Q 045545 30 VTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFIGCD 109 (158)
Q Consensus 30 ~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~~~gi~~~~~~eli~~~~~~~~i~~~i~td 109 (158)
+.|++.||-.++|||+|+.-.++.++++.|++.||-++|+ .++||+.+.++..++.. +.|.++++||
T Consensus 241 vvgdvggriaimvddiiddvqsfvaaae~lkergaykiyv---------~athgllssdapr~lee----s~idevvvtn 307 (354)
T KOG1503|consen 241 VVGDVGGRIAIMVDDIIDDVQSFVAAAEVLKERGAYKIYV---------MATHGLLSSDAPRLLEE----SPIDEVVVTN 307 (354)
T ss_pred EEeccCceEEEEehhhHHhHHHHHHHHHHHHhcCceEEEE---------Eeecccccccchhhhhc----CCCceEEEec
Confidence 4699999999999999999999999999999999999997 78999999999999987 8999999999
Q ss_pred cccc
Q 045545 110 SLAF 113 (158)
Q Consensus 110 si~~ 113 (158)
|+||
T Consensus 308 tvph 311 (354)
T KOG1503|consen 308 TVPH 311 (354)
T ss_pred CCcH
Confidence 9997
No 39
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=98.96 E-value=1.4e-09 Score=78.82 Aligned_cols=44 Identities=43% Similarity=0.551 Sum_probs=40.3
Q ss_pred cccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEee
Q 045545 29 PVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 29 ~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~ 72 (158)
.....++||+||||||+++||+|+.++++.|+++|+++|.++++
T Consensus 81 ~~~~~~~gk~vliVDDvi~tG~Tl~~~~~~L~~~g~~~v~~~vl 124 (125)
T PF00156_consen 81 IDKEDIKGKRVLIVDDVIDTGGTLKEAIELLKEAGAKVVGVAVL 124 (125)
T ss_dssp EESSSGTTSEEEEEEEEESSSHHHHHHHHHHHHTTBSEEEEEEE
T ss_pred cccccccceeEEEEeeeEcccHHHHHHHHHHHhCCCcEEEEEEE
Confidence 44677899999999999999999999999999999999998764
No 40
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.95 E-value=2.6e-09 Score=83.95 Aligned_cols=63 Identities=35% Similarity=0.482 Sum_probs=55.7
Q ss_pred eeccccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeec------CCceecceeeecCCC
Q 045545 26 KLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIAS------PPIIASCYYGVDTPS 88 (158)
Q Consensus 26 ~~~~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~------~~~~~~~~~gi~~~~ 88 (158)
...++..+++||+||||||+++||.||..+.+.|+.+||+++.++++. ...+.+++.|+..|+
T Consensus 83 i~kDld~di~grdVLiVeDIiDsG~TLs~i~~~l~~r~a~sv~i~tLldK~~~r~~~i~~DyvGf~vPd 151 (178)
T COG0634 83 ILKDLDEDIKGRDVLIVEDIIDSGLTLSKVRDLLKERGAKSVRIATLLDKPERRKVDIEADYVGFEVPD 151 (178)
T ss_pred EecccccCCCCCeEEEEecccccChhHHHHHHHHHhCCCCeEEEEEEeeCcccccCCCCcceEeeecCC
Confidence 345678899999999999999999999999999999999999999995 233678899999887
No 41
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=98.94 E-value=2.7e-09 Score=84.71 Aligned_cols=60 Identities=27% Similarity=0.356 Sum_probs=51.2
Q ss_pred cccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecC------Ccee-----cceeeecCCC
Q 045545 29 PVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASP------PIIA-----SCYYGVDTPS 88 (158)
Q Consensus 29 ~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~------~~~~-----~~~~gi~~~~ 88 (158)
+...+++||+||||||++|||.|+.++++.|++.||+++.++++.. ..+. ++|.|+..++
T Consensus 90 ~~~~~v~gk~VliVDDIidTG~Tl~~~~~~l~~~g~~~v~~avL~dK~~~r~~~~~~~~~~~d~~G~~ipd 160 (189)
T PLN02238 90 DLKIDVKGKHVLLVEDIVDTGNTLSALVAHLEAKGAASVSVCALLDKRARRKVKYELVGDGKEYVGFECPD 160 (189)
T ss_pred CCCCCCCCCEEEEEecccchHHHHHHHHHHHHhCCCCEEEEEEEEECCccccCCccCCCCCceEEEEecCC
Confidence 3456799999999999999999999999999999999999998831 1245 7888888876
No 42
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=98.93 E-value=1.7e-09 Score=88.04 Aligned_cols=56 Identities=32% Similarity=0.391 Sum_probs=45.3
Q ss_pred hhhcccCceeeccccccCCC-CEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeec
Q 045545 17 KIRDFGVKLKLSPVTGVLEG-KRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIAS 73 (158)
Q Consensus 17 k~R~~~~~~~~~~~~~~v~g-k~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~ 73 (158)
++|.++.+..|. +.+..+. |+|+|||||+|||+|+.++++.|+++|+++|.+++++
T Consensus 165 ~~rr~nl~~aF~-~~~~~~~~~~vlLvDDV~TTGaTl~~~~~~L~~~Ga~~v~~~~la 221 (225)
T COG1040 165 LERRRNLKGAFR-LKKGIEEPKNVLLVDDVYTTGATLKEAAKLLREAGAKRVFVLTLA 221 (225)
T ss_pred HHHHHhccCCee-cCCCCCCCCeEEEEecccccHHHHHHHHHHHHHcCCceEEEEEEE
Confidence 355666666663 3344444 9999999999999999999999999999999998764
No 43
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=98.91 E-value=5.2e-09 Score=82.46 Aligned_cols=60 Identities=23% Similarity=0.334 Sum_probs=51.9
Q ss_pred cccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeec------CCceecceeeecCCC
Q 045545 29 PVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIAS------PPIIASCYYGVDTPS 88 (158)
Q Consensus 29 ~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~------~~~~~~~~~gi~~~~ 88 (158)
+...+++||+|||||||++||.|+.++.+.|++.||+++.++++. ..-+.++|.|+..++
T Consensus 85 ~~~~~v~gk~VLlVDDIiDTG~TL~~l~~~l~~~~~~~v~~avL~~K~~~r~~~i~~DyvG~~vpd 150 (178)
T PRK15423 85 DLDEDIRGKDVLIVEDIIDSGNTLSKVREILSLREPKSLAICTLLDKPSRREVNVPVEFIGFSIPD 150 (178)
T ss_pred CCCCCCCCCEEEEEeeecCchHHHHHHHHHHHhCCCCEEEEEEEEECCCCCcCCCCCcEEEEEcCC
Confidence 445689999999999999999999999999999999999999994 123578888888876
No 44
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=98.85 E-value=6.3e-09 Score=85.71 Aligned_cols=60 Identities=23% Similarity=0.300 Sum_probs=52.3
Q ss_pred cccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeec--C----CceecceeeecCCC
Q 045545 29 PVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIAS--P----PIIASCYYGVDTPS 88 (158)
Q Consensus 29 ~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~--~----~~~~~~~~gi~~~~ 88 (158)
....+++||+|||||||++||.|+.++++.|++.|+++|.++++. + ..+.|+|.|+..++
T Consensus 143 ~~~~~l~gk~VLIVDDIidTG~Tl~~~~~~L~~~g~~~V~va~L~~K~~~r~~~i~pDYvGfevpd 208 (241)
T PTZ00149 143 DDLSCLKDKHVLIVEDIIDTGNTLVKFCEYLKKFEPKTIRIATLFEKRTPLSNGFKGDFVGFSIPD 208 (241)
T ss_pred ccccccCCCEEEEEEeEeChHHHHHHHHHHHHhcCCCEEEEEEEEecCccccCCCCCceEEEEcCC
Confidence 334578999999999999999999999999999999999999983 1 23578999999976
No 45
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.85 E-value=1e-08 Score=82.36 Aligned_cols=82 Identities=27% Similarity=0.378 Sum_probs=62.3
Q ss_pred cccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecceeeecCC-CHHHHHhcCccchhhheeeccC
Q 045545 31 TGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTP-SSEELISNRMSVEEIREFIGCD 109 (158)
Q Consensus 31 ~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~~~gi~~~-~~~eli~~~~~~~~i~~~i~td 109 (158)
.+..+|++|++|||++|||+|+.++++.|+++|+..+.++++ ++.. ...+.+ +-.+..
T Consensus 107 G~~~~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V~gv~~i-----------vDR~~~~~~~~----------~~~g~~ 165 (201)
T COG0461 107 GGEVKGEKVVVVEDVITTGGSILEAVEALREAGAEVVGVAVI-----------VDRQSGAKEVL----------KEYGVK 165 (201)
T ss_pred ecCCCCCEEEEEEecccCCHhHHHHHHHHHHcCCeEEEEEEE-----------EecchhHHHHH----------HhcCCc
Confidence 344589999999999999999999999999999999998765 3332 222222 235677
Q ss_pred cccccChHHHHHHhcCCCCCcccccc
Q 045545 110 SLAFLLIDSLNKMLGDDSQNFCYACF 135 (158)
Q Consensus 110 si~~~sl~~l~~~~~~~~~~~~~~cf 135 (158)
-.|.+++.+|+..+.+ .+.|..|.
T Consensus 166 ~~sl~tl~dl~~~~~~--~~~~~~~~ 189 (201)
T COG0461 166 LVSLVTLSDLLEVLYE--AGDIPLEE 189 (201)
T ss_pred eEEEeeHHHHHHHHHh--ccCCCHHH
Confidence 7889999999998876 34455544
No 46
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=98.84 E-value=1.2e-08 Score=80.11 Aligned_cols=41 Identities=37% Similarity=0.557 Sum_probs=37.7
Q ss_pred ccC-CCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEee
Q 045545 32 GVL-EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 32 ~~v-~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~ 72 (158)
+.+ +|++|+||||+++||+|+.++++.|+++|++.+.++++
T Consensus 102 g~~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~vv~~~vl 143 (176)
T PRK13812 102 GRLDEGEEVVVLEDIATTGQSAVDAVEALREAGATVNRVLVV 143 (176)
T ss_pred ecCCCcCEEEEEEEeeCCCHHHHHHHHHHHHCCCeEEEEEEE
Confidence 455 89999999999999999999999999999999998765
No 47
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=98.81 E-value=1.3e-08 Score=82.26 Aligned_cols=60 Identities=13% Similarity=0.223 Sum_probs=52.0
Q ss_pred cccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecC------CceecceeeecCCC
Q 045545 29 PVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASP------PIIASCYYGVDTPS 88 (158)
Q Consensus 29 ~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~------~~~~~~~~gi~~~~ 88 (158)
.+..+++||+|||||||++||.|+..+.+.|++.||++|.++++.. .-+.++|.|+..++
T Consensus 111 ~~~~~i~gk~VLIVDDIvDTG~TL~~v~~~l~~~~p~svk~avL~dK~~~r~~~i~~DyvG~~vpd 176 (211)
T PTZ00271 111 DVRDSVENRHILIVEDIVDSAITLQYLMRFMLAKKPASLKTVVLLDKPSGRKVEVLVDYPVITIPH 176 (211)
T ss_pred CCCCCCCCCEEEEEecccCCHHHHHHHHHHHHhcCCCEEEEEEEEEcccCCcCCCCCCEEEEEcCC
Confidence 4456899999999999999999999999999999999999999941 22568888888876
No 48
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=98.79 E-value=2e-08 Score=78.35 Aligned_cols=43 Identities=28% Similarity=0.405 Sum_probs=39.3
Q ss_pred ccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEee
Q 045545 30 VTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 30 ~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~ 72 (158)
..+.++|++|+||||+++||+|+..+++.|+++|++.+.++++
T Consensus 98 ~~g~~~g~~VlIVDDvi~TG~T~~~~~~~l~~~Ga~v~~~~~~ 140 (170)
T PRK13811 98 IIGDVKGKRVLLVEDVTTSGGSALYGIEQLRAAGAVVDDVVTV 140 (170)
T ss_pred EEcccCCCEEEEEEecccccHHHHHHHHHHHHCCCeEEEEEEE
Confidence 3467899999999999999999999999999999999998765
No 49
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=98.76 E-value=2.6e-08 Score=80.19 Aligned_cols=72 Identities=17% Similarity=0.205 Sum_probs=54.7
Q ss_pred cCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecceeeecCC-CHHHHHhcCccchhhheeeccCcc
Q 045545 33 VLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTP-SSEELISNRMSVEEIREFIGCDSL 111 (158)
Q Consensus 33 ~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~~~gi~~~-~~~eli~~~~~~~~i~~~i~tdsi 111 (158)
..+|++|+||||++|||+|+.++++.|+++|+..+.++++ ++.. .+.+.+ ++ .+.+-.
T Consensus 115 ~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~vv~v~vl-----------vdr~~~~~~~l---------~~-~gi~v~ 173 (206)
T PRK13809 115 FTPGQTCLVINDMVSSGKSIIETAVALEEEGLVVREALVF-----------LDRQKGACQPL---------GP-QGIKLS 173 (206)
T ss_pred cCCCCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEE-----------EECcccHHHHH---------Hh-cCCCEE
Confidence 3589999999999999999999999999999998887654 2211 222222 22 356667
Q ss_pred cccChHHHHHHhcC
Q 045545 112 AFLLIDSLNKMLGD 125 (158)
Q Consensus 112 ~~~sl~~l~~~~~~ 125 (158)
+.++..+++..+.+
T Consensus 174 sl~~~~~l~~~l~~ 187 (206)
T PRK13809 174 SVFTVPDLIKSLIS 187 (206)
T ss_pred EEEEHHHHHHHHHH
Confidence 77889999998874
No 50
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=98.75 E-value=1.4e-08 Score=80.45 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=36.7
Q ss_pred CCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEee
Q 045545 34 LEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 34 v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~ 72 (158)
.+|++|+||||+++||+|+.++++.|+++|++.++++++
T Consensus 103 ~~G~~VLIVDDIi~TG~Tl~~a~~~l~~~Ga~vv~~~vl 141 (187)
T TIGR01367 103 KPGEKFVAVEDVVTTGGSLLEAIRAIEGQGGQVVGLACI 141 (187)
T ss_pred CCCCEEEEEEeeecchHHHHHHHHHHHHcCCeEEEEEEE
Confidence 489999999999999999999999999999999988765
No 51
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=98.71 E-value=2.2e-08 Score=77.65 Aligned_cols=40 Identities=28% Similarity=0.493 Sum_probs=37.0
Q ss_pred cCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEee
Q 045545 33 VLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 33 ~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~ 72 (158)
..+||+||||||++|||+|+.++++.|+++|++.+.++++
T Consensus 106 ~~~gk~VLIVDDIitTG~Tl~~a~~~L~~~Ga~~v~~~~l 145 (169)
T TIGR01090 106 IKPGQRVLIVDDLLATGGTAEATDELIRKLGGEVVEAAFL 145 (169)
T ss_pred cCCcCEEEEEeccccchHHHHHHHHHHHHcCCEEEEEEEE
Confidence 4599999999999999999999999999999999988664
No 52
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=98.71 E-value=2.5e-08 Score=78.22 Aligned_cols=40 Identities=38% Similarity=0.554 Sum_probs=37.4
Q ss_pred cCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEee
Q 045545 33 VLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 33 ~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~ 72 (158)
.++||+|+||||+++||+|+.++++.|+++||+.|.++++
T Consensus 117 ~~~gk~VLIVDDiitTG~Tl~aa~~~L~~~GA~~V~~~~v 156 (178)
T PRK07322 117 KLKGKRVAIVDDVVSTGGTLTALERLVERAGGQVVAKAAI 156 (178)
T ss_pred ccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEE
Confidence 5789999999999999999999999999999999998665
No 53
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=98.71 E-value=3e-08 Score=79.20 Aligned_cols=41 Identities=44% Similarity=0.649 Sum_probs=38.5
Q ss_pred ccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEee
Q 045545 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 32 ~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~ 72 (158)
+.++||+|+||||++|||+|+.++++.|+++|++.++++++
T Consensus 136 ~~~~gk~VlIVDDVitTG~Tl~~ai~~l~~~Ga~~v~v~vl 176 (200)
T PRK02277 136 ASVEGKRCVIVDDVITSGTTMKETIEYLKEHGGKPVAVVVL 176 (200)
T ss_pred ccCCcCEEEEEeeccCchHHHHHHHHHHHHcCCEEEEEEEE
Confidence 56899999999999999999999999999999999998765
No 54
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=98.70 E-value=6.9e-08 Score=76.90 Aligned_cols=71 Identities=30% Similarity=0.453 Sum_probs=53.2
Q ss_pred cCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecceeeecCC-CHHHHHhcCccchhhheeeccCcc
Q 045545 33 VLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTP-SSEELISNRMSVEEIREFIGCDSL 111 (158)
Q Consensus 33 ~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~~~gi~~~-~~~eli~~~~~~~~i~~~i~tdsi 111 (158)
..+|++|+||||+++||+|+..+++.|+++|++.+.++++ ++.+ ...+++. ..+.+..
T Consensus 110 ~~~g~~VliVDDvi~tG~Tl~~~~~~l~~~Ga~~v~~~vl-----------v~~~~~~~~~~~----------~~g~~~~ 168 (202)
T PRK00455 110 RLFGKRVLVVEDVITTGGSVLEAVEAIRAAGAEVVGVAVI-----------VDRQSAAQEVFA----------DAGVPLI 168 (202)
T ss_pred CCCCCEEEEEecccCCcHHHHHHHHHHHHcCCEEEEEEEE-----------EECcchHHHHHH----------hcCCcEE
Confidence 4579999999999999999999999999999999998776 2221 2222222 2344556
Q ss_pred cccChHHHHHHhc
Q 045545 112 AFLLIDSLNKMLG 124 (158)
Q Consensus 112 ~~~sl~~l~~~~~ 124 (158)
+.+++.++..++.
T Consensus 169 sl~~~~~~~~~~~ 181 (202)
T PRK00455 169 SLITLDDLLEYAE 181 (202)
T ss_pred EEeeHHHHHHHHH
Confidence 6677888887766
No 55
>PLN02293 adenine phosphoribosyltransferase
Probab=98.67 E-value=6e-08 Score=76.99 Aligned_cols=54 Identities=31% Similarity=0.523 Sum_probs=44.6
Q ss_pred ccC-CCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecceeeecCCCHHHHHh
Q 045545 32 GVL-EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSSEELIS 94 (158)
Q Consensus 32 ~~v-~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~~~gi~~~~~~eli~ 94 (158)
+.+ +|++|+||||+++||+|+.++++.|+++|+..+.++ +.+++......+.+.
T Consensus 120 ~~i~~G~rVlIVDDvitTG~T~~~~~~~l~~~Ga~~v~~~---------~~~~~~~~~g~~~l~ 174 (187)
T PLN02293 120 GAVEPGERALVIDDLIATGGTLCAAINLLERAGAEVVECA---------CVIELPELKGREKLN 174 (187)
T ss_pred CccCCCCEEEEEeccccchHHHHHHHHHHHHCCCEEEEEE---------EEEEcCCccHHHHhc
Confidence 445 799999999999999999999999999999998874 455566655666554
No 56
>PRK06031 phosphoribosyltransferase; Provisional
Probab=98.67 E-value=5.6e-08 Score=79.69 Aligned_cols=71 Identities=24% Similarity=0.312 Sum_probs=51.1
Q ss_pred cCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecceeeecC-CCHHHHHhcCccchhhheeeccCcc
Q 045545 33 VLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDT-PSSEELISNRMSVEEIREFIGCDSL 111 (158)
Q Consensus 33 ~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~~~gi~~-~~~~eli~~~~~~~~i~~~i~tdsi 111 (158)
.++|++|+||||+++||+|+.+++++|+++|++.+.+.++ ++. ..+.+++.. ...++...+++.-.+
T Consensus 151 ~~~GkrVLIVDDVitTG~Tl~aa~~lL~~~Ga~Vvgv~v~-----------v~~g~~~~~~l~~-~~~~~~~~~~~~~~~ 218 (233)
T PRK06031 151 LLEGRRVALIDDVISSGASIVAGLRLLAACGIEPAGIGAA-----------MLQSERWRESLAA-AGPQWPARVVGVFAT 218 (233)
T ss_pred cCCCCEEEEEEeEccccHHHHHHHHHHHHcCCeEEEEEEE-----------EEccccHHHHHHh-cCCCcccceEEEeec
Confidence 4699999999999999999999999999999998887664 222 334455543 122334556666566
Q ss_pred cccC
Q 045545 112 AFLL 115 (158)
Q Consensus 112 ~~~s 115 (158)
|.++
T Consensus 219 p~~~ 222 (233)
T PRK06031 219 PILE 222 (233)
T ss_pred cccc
Confidence 6543
No 57
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=98.66 E-value=4.1e-08 Score=76.51 Aligned_cols=40 Identities=33% Similarity=0.527 Sum_probs=37.3
Q ss_pred cCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEee
Q 045545 33 VLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 33 ~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~ 72 (158)
.++|++|+||||+++||+|+.++++.|+++|++.+.++++
T Consensus 111 ~~~g~~VLIVDDivtTG~Tl~~~~~~l~~~Ga~~v~v~vl 150 (175)
T PRK02304 111 IKPGDRVLIVDDLLATGGTLEAAIKLLERLGAEVVGAAFV 150 (175)
T ss_pred cCCCCEEEEEeCCccccHHHHHHHHHHHHcCCEEEEEEEE
Confidence 3799999999999999999999999999999999988765
No 58
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=98.59 E-value=7.7e-08 Score=75.90 Aligned_cols=46 Identities=39% Similarity=0.562 Sum_probs=41.0
Q ss_pred eccccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEee
Q 045545 27 LSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 27 ~~~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~ 72 (158)
++..-+.+.||+++||||++|||+|+.++++.|++.|++.+.|.++
T Consensus 132 iS~NFa~V~gK~cvIVDDvittG~Ti~E~Ie~lke~g~kpv~v~VL 177 (203)
T COG0856 132 ISSNFASVEGKRCVIVDDVITTGSTIKETIEQLKEEGGKPVLVVVL 177 (203)
T ss_pred eecccccccCceEEEEecccccChhHHHHHHHHHHcCCCcEEEEEE
Confidence 3344477999999999999999999999999999999999888776
No 59
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=98.58 E-value=1.3e-07 Score=76.00 Aligned_cols=56 Identities=23% Similarity=0.418 Sum_probs=47.6
Q ss_pred cccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecceeeecCCCHHHHHhc
Q 045545 29 PVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSSEELISN 95 (158)
Q Consensus 29 ~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~~~gi~~~~~~eli~~ 95 (158)
.+..+++||+|||+||+++||+|+..+++.|++.|+++|.++++ +..+...+.+..
T Consensus 117 ~lp~~i~~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~~~~l-----------l~~~~gl~~l~~ 172 (209)
T PRK00129 117 KLPEDIDERTVIVVDPMLATGGSAIAAIDLLKKRGAKNIKVLCL-----------VAAPEGIKALEE 172 (209)
T ss_pred eCCCcCCCCEEEEECCcccchHHHHHHHHHHHHcCCCEEEEEEE-----------ecCHHHHHHHHH
Confidence 45678999999999999999999999999999999999998654 555666666654
No 60
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=98.54 E-value=1.5e-07 Score=75.46 Aligned_cols=56 Identities=25% Similarity=0.408 Sum_probs=46.8
Q ss_pred cccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecceeeecCCCHHHHHhc
Q 045545 29 PVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSSEELISN 95 (158)
Q Consensus 29 ~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~~~gi~~~~~~eli~~ 95 (158)
.+..+++||+|||+||+++||+|+..+++.|++.|+++|.++++ +..+...+.+..
T Consensus 115 ~lp~~i~~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~v~~l-----------l~~~~gl~~l~~ 170 (207)
T TIGR01091 115 KLPEDIDERTVIVLDPMLATGGTMIAALDLLKKRGAKKIKVLSI-----------VAAPEGIEAVEK 170 (207)
T ss_pred cCCCCCCCCEEEEECCCccchHHHHHHHHHHHHcCCCEEEEEEE-----------ecCHHHHHHHHH
Confidence 45568999999999999999999999999999999999887655 555555565554
No 61
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=98.51 E-value=1.9e-07 Score=72.81 Aligned_cols=40 Identities=40% Similarity=0.620 Sum_probs=37.1
Q ss_pred cCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEee
Q 045545 33 VLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 33 ~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~ 72 (158)
..+|++|+||||+++||+|+.++++.|+++|++.+.++++
T Consensus 105 ~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~Ga~v~~~~vl 144 (173)
T TIGR00336 105 LLEGDKVVVVEDVITTGTSILEAVEIIQAAGGQVAGVIIA 144 (173)
T ss_pred CCCCCEEEEEeccccChHHHHHHHHHHHHcCCeEEEEEEE
Confidence 3589999999999999999999999999999999998765
No 62
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=98.50 E-value=2.2e-07 Score=73.60 Aligned_cols=42 Identities=21% Similarity=0.489 Sum_probs=37.9
Q ss_pred cccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEee
Q 045545 31 TGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 31 ~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~ 72 (158)
.+..+|++|+||||+++||+|+.++++.++++|+..+.++++
T Consensus 109 ~~~~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa~vv~v~~v 150 (187)
T PRK12560 109 NGIEKGDRVAIIDDTLSTGGTVIALIKAIENSGGIVSDVICV 150 (187)
T ss_pred cCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEE
Confidence 345689999999999999999999999999999999888654
No 63
>KOG3367 consensus Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.45 E-value=2.2e-07 Score=73.26 Aligned_cols=87 Identities=20% Similarity=0.242 Sum_probs=62.9
Q ss_pred CCccccceeeCCChhhhcccC-------ceeec--cccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeec
Q 045545 3 TTRYEHETFIEPSQKIRDFGV-------KLKLS--PVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIAS 73 (158)
Q Consensus 3 ~n~~~~r~~~~~~~k~R~~~~-------~~~~~--~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~ 73 (158)
|||...|..-+.-...|.++- .++.. .....+.||+|+||||+++||.||......+++.+++.+.++.+.
T Consensus 83 ~n~~s~~~~pmtvDFIR~kSY~n~~stg~iqiig~d~l~~ltgK~VliVeDIvdTGrTl~~Lls~~~~~k~~~v~vasLL 162 (216)
T KOG3367|consen 83 KNRNSDRPLPMTVDFIRAKSYCNDQSTGDIQIIGGDDLSTLTGKNVLIVEDIVDTGRTLSTLLSHMKAYKPSMVKVASLL 162 (216)
T ss_pred hhcccCCCcceeeeeeehhhhcCCcccCCceeecCCCHHHhcCCcEEEEEeeccccchHHHHHHHHHhcCccceeeeeec
Confidence 566666666665444453331 11111 112457999999999999999999999999999999999998884
Q ss_pred ------CCceecceeeecCCCH
Q 045545 74 ------PPIIASCYYGVDTPSS 89 (158)
Q Consensus 74 ------~~~~~~~~~gi~~~~~ 89 (158)
...+.+++.|+..|+.
T Consensus 163 ~Krt~R~v~yk~dy~gFEiPdk 184 (216)
T KOG3367|consen 163 VKRTRRSVGYKPDYVGFEIPDK 184 (216)
T ss_pred ccccccccCCCcccccccCCch
Confidence 1345688888888764
No 64
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=98.42 E-value=4.3e-07 Score=72.14 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=36.5
Q ss_pred CCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEee
Q 045545 34 LEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 34 v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~ 72 (158)
.+|++|+||||++|||+|+.++++.++++|+..+.++++
T Consensus 120 ~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~~v~vl 158 (187)
T PRK13810 120 KPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIKYVITV 158 (187)
T ss_pred CCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEEEEEEE
Confidence 489999999999999999999999999999999998765
No 65
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=98.41 E-value=4.3e-07 Score=72.28 Aligned_cols=38 Identities=32% Similarity=0.559 Sum_probs=36.0
Q ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEee
Q 045545 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 35 ~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~ 72 (158)
+|++|+||||+++||+|+.+++++++++|+..+.++++
T Consensus 116 ~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vvgv~~l 153 (191)
T TIGR01744 116 DQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIAGIGIV 153 (191)
T ss_pred CcCEEEEEEehhccChHHHHHHHHHHHCCCEEEEEEEE
Confidence 89999999999999999999999999999999998664
No 66
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=98.38 E-value=5.3e-07 Score=71.69 Aligned_cols=38 Identities=32% Similarity=0.639 Sum_probs=35.9
Q ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEee
Q 045545 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 35 ~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~ 72 (158)
+|++|+||||+++||+|+.+++++++++|+..+.++++
T Consensus 116 ~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~vvgv~~l 153 (189)
T PRK09219 116 EGDRVLIIDDFLANGQAALGLIDIIEQAGAKVAGIGIV 153 (189)
T ss_pred CCCEEEEEeehhhcChHHHHHHHHHHHCCCEEEEEEEE
Confidence 89999999999999999999999999999999998654
No 67
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=98.33 E-value=1.3e-06 Score=78.24 Aligned_cols=71 Identities=24% Similarity=0.365 Sum_probs=54.3
Q ss_pred CCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecceeeecCC-CHHHHHhcCccchhhheeeccCccc
Q 045545 34 LEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTP-SSEELISNRMSVEEIREFIGCDSLA 112 (158)
Q Consensus 34 v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~~~gi~~~-~~~eli~~~~~~~~i~~~i~tdsi~ 112 (158)
.+|++|+||||++|||+|+.++++.|+++|++.+.++++ ++.+ ...+.+. + .+.+-.+
T Consensus 391 ~~G~rVlIVDDViTTGgSi~eaie~l~~aG~~V~~v~vl-----------VDR~~g~~~~L~---------~-~gv~~~S 449 (477)
T PRK05500 391 HPGETVVVVDDILITGKSVMEGAEKLKSAGLNVRDIVVF-----------IDHEQGVKDKLQ---------S-HGYQAYS 449 (477)
T ss_pred CCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEE-----------EECCcchHHHHH---------h-cCCCEEE
Confidence 389999999999999999999999999999999998765 2222 1222222 2 3455666
Q ss_pred ccChHHHHHHhcC
Q 045545 113 FLLIDSLNKMLGD 125 (158)
Q Consensus 113 ~~sl~~l~~~~~~ 125 (158)
.++++++++.+.+
T Consensus 450 l~tl~el~~~l~~ 462 (477)
T PRK05500 450 VLTISEITETLYQ 462 (477)
T ss_pred EEEHHHHHHHHHH
Confidence 7889999988864
No 68
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=98.29 E-value=1.3e-06 Score=71.77 Aligned_cols=40 Identities=35% Similarity=0.535 Sum_probs=37.3
Q ss_pred cCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEee
Q 045545 33 VLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 33 ~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~ 72 (158)
-.+|++||||||+++||+|+..++++++++|++.+.++++
T Consensus 173 l~~G~rVLIVDDvi~TG~Tl~~~~~ll~~~ga~vvgv~vl 212 (238)
T PRK08558 173 LKKGDRVLIVDDIIRSGETQRALLDLARQAGADVVGVFFL 212 (238)
T ss_pred cCCcCEEEEEecccccCHHHHHHHHHHHHcCCEEEEEEEE
Confidence 3689999999999999999999999999999999998765
No 69
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=98.16 E-value=3.7e-06 Score=66.24 Aligned_cols=38 Identities=37% Similarity=0.608 Sum_probs=35.4
Q ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEee
Q 045545 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 35 ~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~ 72 (158)
+|++|+||||++.||+|+..+.+++.++|+..+.+..+
T Consensus 115 ~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga~vvg~~~~ 152 (179)
T COG0503 115 PGDRVLIVDDLLATGGTALALIELLEQAGAEVVGAAFV 152 (179)
T ss_pred CCCEEEEEecchhcChHHHHHHHHHHHCCCEEEEEEEE
Confidence 79999999999999999999999999999999987543
No 70
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=98.13 E-value=5.4e-06 Score=67.12 Aligned_cols=42 Identities=36% Similarity=0.616 Sum_probs=38.9
Q ss_pred cccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEee
Q 045545 31 TGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 31 ~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~ 72 (158)
..+++||+||||||-+.||.||..+++.+++++++.|.+++.
T Consensus 119 ~~~~~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAVP 160 (220)
T COG1926 119 VPSLKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAVP 160 (220)
T ss_pred CCCCCCCEEEEEeCCcchhHHHHHHHHHHHhcCCceEEEEcc
Confidence 357899999999999999999999999999999999998764
No 71
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=98.12 E-value=4.2e-06 Score=70.00 Aligned_cols=39 Identities=26% Similarity=0.437 Sum_probs=36.6
Q ss_pred CCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEee
Q 045545 34 LEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 34 v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~ 72 (158)
.+|++|+||||+++||+|+..++++++++|+..+.++++
T Consensus 192 ~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvGv~vl 230 (268)
T TIGR01743 192 KTGSKVLIIDDFMKAGGTINGMINLLDEFDAEVAGIGVL 230 (268)
T ss_pred CCcCEEEEEeeecccCHHHHHHHHHHHHCCCEEEEEEEE
Confidence 479999999999999999999999999999999998765
No 72
>PRK09213 pur operon repressor; Provisional
Probab=98.09 E-value=5.3e-06 Score=69.54 Aligned_cols=38 Identities=39% Similarity=0.567 Sum_probs=36.1
Q ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEee
Q 045545 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 35 ~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~ 72 (158)
+|++|+||||+++||+|+..++++++++|+..+.++++
T Consensus 195 ~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvGv~vl 232 (271)
T PRK09213 195 EGSRVLIVDDFMKAGGTINGMISLLKEFDAEVVGIGVL 232 (271)
T ss_pred CcCEEEEEeeecccCHhHHHHHHHHHHCCCEEEEEEEE
Confidence 79999999999999999999999999999999998765
No 73
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=98.08 E-value=4.9e-06 Score=64.17 Aligned_cols=59 Identities=20% Similarity=0.222 Sum_probs=42.4
Q ss_pred cCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeec--C-CceecceeeecCCCHHHHHhcC
Q 045545 33 VLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIAS--P-PIIASCYYGVDTPSSEELISNR 96 (158)
Q Consensus 33 ~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~--~-~~~~~~~~gi~~~~~~eli~~~ 96 (158)
..+||+||||||+++||.|+..+.+.+++ +.++++. + ....|++++-..+...+++.+|
T Consensus 81 ~~~gk~VLIVDDIiDTG~Tl~~v~~~l~~-----v~~a~l~~K~~~~~~~D~~~~~~~~~~Wi~fpw 142 (156)
T PRK09177 81 EGDGEGFLVVDDLVDTGGTARAVREMYPK-----AHFATVYAKPAGRPLVDTYVTDVPQDTWIEFPW 142 (156)
T ss_pred CcCcCEEEEEeeeeCCHHHHHHHHHHHhh-----CCEEEEEECcCCCCCCCeEEeEcCCCCeEEeCC
Confidence 46999999999999999999999999975 3344442 2 1245678777666555555543
No 74
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.06 E-value=8.2e-06 Score=63.88 Aligned_cols=61 Identities=26% Similarity=0.415 Sum_probs=49.5
Q ss_pred cccccCCCCEEEEEeccccccHHHHHHHHHHHHcC-CcEEEEEeec----CC-ceecceeeecCCCH
Q 045545 29 PVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAG-AKEVHMRIAS----PP-IIASCYYGVDTPSS 89 (158)
Q Consensus 29 ~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~G-a~~V~v~v~~----~~-~~~~~~~gi~~~~~ 89 (158)
.+..++.||+|+||||++-||.|+.+|.+.|.+.| +..|.++++. .- -+.++|.|-..|.+
T Consensus 89 ~~~~di~~k~VILVDDVLytGRTIRAAldal~d~GRPa~I~LavLVDRGHRELPIRaDyVGKniPTs 155 (179)
T COG2065 89 ILPFDITGKRVILVDDVLYTGRTIRAALDALVDYGRPAKIQLAVLVDRGHRELPIRADYVGKNIPTS 155 (179)
T ss_pred cCcccccCCEEEEEeeecccCccHHHHHHHHHhcCCcceEEEEEEEcCCCccCCcccccccCcCCCC
Confidence 34578999999999999999999999999999988 7899999882 21 14667777666643
No 75
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=98.04 E-value=1.4e-06 Score=69.59 Aligned_cols=52 Identities=31% Similarity=0.439 Sum_probs=39.8
Q ss_pred CCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCceecceeeecC
Q 045545 34 LEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDT 86 (158)
Q Consensus 34 v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~~~gi~~ 86 (158)
+.||+||||||+.+||.||..+.+.|++..+..+..+++.-... |.+|+...
T Consensus 85 l~GkkVLIVDDI~DTG~Tl~~a~~~l~~~~p~e~rta~l~~~~~-~~~~~~~~ 136 (192)
T COG2236 85 LSGKKVLIVDDIVDTGETLELALEELKKLAPAEVRTAVLQYKKS-PDYYGEEV 136 (192)
T ss_pred cCCCeEEEEecccCchHhHHHHHHHHHhhCchhhhhhhhhcccC-Ccccccce
Confidence 89999999999999999999999999997777776655532111 55555443
No 76
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=97.91 E-value=1.6e-05 Score=62.13 Aligned_cols=41 Identities=37% Similarity=0.512 Sum_probs=36.5
Q ss_pred ccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEee
Q 045545 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 32 ~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~ 72 (158)
.--.|.+|++|||++.||+|+.+|.+++.+.|++.+-+++.
T Consensus 118 Ai~~g~rvvvVDDllATGGTl~AA~~Ll~r~ga~vvE~~~v 158 (183)
T KOG1712|consen 118 AIKPGQRVVVVDDLLATGGTLAAATELLERVGAEVVECACV 158 (183)
T ss_pred ccCCCCeEEEEechhhcCccHHHHHHHHHHhccEEEEEEEE
Confidence 34478999999999999999999999999999999887544
No 77
>PLN02541 uracil phosphoribosyltransferase
Probab=97.45 E-value=0.00022 Score=58.96 Aligned_cols=42 Identities=29% Similarity=0.398 Sum_probs=35.1
Q ss_pred cccCC-CCEEEEEeccccccHHHHHHHHHHHHcCCc--EEEEEee
Q 045545 31 TGVLE-GKRVVVVDDSIVRGTTSSKIVRLLKEAGAK--EVHMRIA 72 (158)
Q Consensus 31 ~~~v~-gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~--~V~v~v~ 72 (158)
..++. +++|+|+||++.||+|+..+++.|++.|+. .+.++++
T Consensus 151 P~~i~~~~~VlllDpmLATGgS~~~ai~~L~~~Gv~~~~I~~v~~ 195 (244)
T PLN02541 151 PDKFPEGSRVLVVDPMLATGGTIVAAIDELVSRGASVEQIRVVCA 195 (244)
T ss_pred chhcCCCCEEEEECcchhhhHHHHHHHHHHHHcCCCcccEEEEEE
Confidence 44564 679999999999999999999999999987 6665443
No 78
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=96.97 E-value=0.0016 Score=52.86 Aligned_cols=44 Identities=20% Similarity=0.401 Sum_probs=39.3
Q ss_pred cccccCCCCEEEEEeccccccHHHHHHHHHHHHc-CCcEEEEEee
Q 045545 29 PVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEA-GAKEVHMRIA 72 (158)
Q Consensus 29 ~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~-Ga~~V~v~v~ 72 (158)
.+..+++++.|+|+|=|+.||+|+..+++.|++. |++++.++++
T Consensus 117 KLP~~~~~~~viv~DPMLATG~s~i~ai~~L~~~G~~~~I~~v~~ 161 (210)
T COG0035 117 KLPEDIDERTVIVLDPMLATGGSAIAAIDLLKKRGGPKNIKVVSL 161 (210)
T ss_pred hCCCcccCCeEEEECchhhccHhHHHHHHHHHHhCCCceEEEEEE
Confidence 3455899999999999999999999999999999 8998887665
No 79
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=96.83 E-value=0.0029 Score=50.75 Aligned_cols=44 Identities=18% Similarity=0.419 Sum_probs=36.9
Q ss_pred cccccCCCCEEEEEeccccccHHHHHHHHHHHHcCC--cEEEEEee
Q 045545 29 PVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGA--KEVHMRIA 72 (158)
Q Consensus 29 ~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga--~~V~v~v~ 72 (158)
.+..++.+++|+|+|-++.||+|+..+++.|++.|+ ++|.++++
T Consensus 114 ~LP~~i~~~~VillDpmlaTG~s~~~ai~~L~~~G~~~~~I~~v~~ 159 (207)
T PF14681_consen 114 KLPEDIENRKVILLDPMLATGGSAIAAIEILKEHGVPEENIIIVSV 159 (207)
T ss_dssp E--TTGTTSEEEEEESEESSSHHHHHHHHHHHHTTG-GGEEEEEEE
T ss_pred hCCCCccCCEEEEEeccccchhhHHHHHHHHHHcCCCcceEEEEEE
Confidence 455678999999999999999999999999999886 67776554
No 80
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=96.29 E-value=0.009 Score=47.82 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=30.1
Q ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEE
Q 045545 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMR 70 (158)
Q Consensus 35 ~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~ 70 (158)
..+.+++|||=+|||.|+..+++.|++.-+.+=+++
T Consensus 120 ~~~~lVLVDDEiSTG~T~lnli~al~~~~p~~~yvv 155 (191)
T PF15609_consen 120 NARTLVLVDDEISTGNTFLNLIRALHAKYPRKRYVV 155 (191)
T ss_pred CCCCEEEEecCccchHHHHHHHHHHHHhCCCceEEE
Confidence 356899999999999999999999998766544443
No 81
>PF15610 PRTase_3: PRTase ComF-like
Probab=91.68 E-value=0.35 Score=40.79 Aligned_cols=39 Identities=28% Similarity=0.540 Sum_probs=34.6
Q ss_pred cccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEE
Q 045545 31 TGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69 (158)
Q Consensus 31 ~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v 69 (158)
...++||.||.+|||-.||++-..+.+.+++.|++...+
T Consensus 133 ~~~l~gk~lIflDDIkITGshE~~V~~~~~~~~~~~~~~ 171 (274)
T PF15610_consen 133 KEFLSGKHLIFLDDIKITGSHEDKVRKILKEYGLENDFI 171 (274)
T ss_pred HHHhCCcEEEEeccEEecCcHHHHHHHHHHHcCccccEE
Confidence 456899999999999999999999999999999987443
No 82
>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]
Probab=90.54 E-value=0.65 Score=37.98 Aligned_cols=37 Identities=30% Similarity=0.399 Sum_probs=33.7
Q ss_pred cccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCc
Q 045545 29 PVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAK 65 (158)
Q Consensus 29 ~~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~ 65 (158)
....|+..|+|+|.=-+++||.|+.+|++.|+++|.-
T Consensus 182 rfppDI~sR~VLLmYPi~stGnTV~~Av~VL~EhgVp 218 (267)
T KOG1017|consen 182 RFPPDITSRRVLLMYPIISTGNTVCKAVEVLKEHGVP 218 (267)
T ss_pred ecCCcccceeEEEEeeeecCCccHHHHHHHHHHcCCC
Confidence 3467899999999999999999999999999999963
No 83
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=74.44 E-value=9.3 Score=28.10 Aligned_cols=35 Identities=37% Similarity=0.579 Sum_probs=31.4
Q ss_pred ccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEE
Q 045545 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMR 70 (158)
Q Consensus 32 ~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~ 70 (158)
++++|++++|+ -+|++-..++..|.+.|+++|+++
T Consensus 8 ~~l~~~~vlvi----GaGg~ar~v~~~L~~~g~~~i~i~ 42 (135)
T PF01488_consen 8 GDLKGKRVLVI----GAGGAARAVAAALAALGAKEITIV 42 (135)
T ss_dssp STGTTSEEEEE----SSSHHHHHHHHHHHHTTSSEEEEE
T ss_pred CCcCCCEEEEE----CCHHHHHHHHHHHHHcCCCEEEEE
Confidence 57899999986 589999999999999999999973
No 84
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=66.48 E-value=16 Score=23.56 Aligned_cols=34 Identities=32% Similarity=0.444 Sum_probs=28.2
Q ss_pred cCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEE
Q 045545 33 VLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69 (158)
Q Consensus 33 ~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v 69 (158)
.-+++.|+++++- |.....++..|++.|-..+++
T Consensus 47 ~~~~~~vv~~c~~---~~~a~~~~~~l~~~G~~~v~~ 80 (89)
T cd00158 47 LDKDKPIVVYCRS---GNRSARAAKLLRKAGGTNVYN 80 (89)
T ss_pred cCCCCeEEEEeCC---CchHHHHHHHHHHhCcccEEE
Confidence 3477889999887 778888999999999887774
No 85
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=66.18 E-value=16 Score=23.75 Aligned_cols=35 Identities=40% Similarity=0.461 Sum_probs=28.6
Q ss_pred ccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEE
Q 045545 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69 (158)
Q Consensus 32 ~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v 69 (158)
+.-+++.+++++ .+|.....++..|++.|-..|++
T Consensus 52 ~~~~~~~iv~~c---~~g~~a~~~~~~l~~~G~~~v~~ 86 (100)
T smart00450 52 GLDKDKPVVVYC---RSGNRSAKAAWLLRELGFKNVYL 86 (100)
T ss_pred CCCCCCeEEEEe---CCCcHHHHHHHHHHHcCCCceEE
Confidence 344678899998 57888888999999999988775
No 86
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=62.49 E-value=19 Score=31.10 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=32.3
Q ss_pred cccccCCCCEEEEEeccccccH-HH---HHHHHHHHHcCCcEEEEEe
Q 045545 29 PVTGVLEGKRVVVVDDSIVRGT-TS---SKIVRLLKEAGAKEVHMRI 71 (158)
Q Consensus 29 ~~~~~v~gk~vliVDDvi~TG~-Tl---~~~~~~L~~~Ga~~V~v~v 71 (158)
.+.+.++|++|+|+........ .+ .-.+..++++||++|.+++
T Consensus 44 ~i~EsVrg~dVfI~qs~~~pvnd~lmELLi~idA~k~asA~~It~Vi 90 (314)
T COG0462 44 RIEESVRGKDVFIIQSTSPPVNDNLMELLIMIDALKRASAKRITAVI 90 (314)
T ss_pred EecccccCCeEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCceEEEEe
Confidence 4568899999998877665333 33 3367889999999999854
No 87
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=60.60 E-value=27 Score=25.43 Aligned_cols=42 Identities=21% Similarity=0.394 Sum_probs=28.3
Q ss_pred ccccCCCCEEEEEeccccc--cH--HHHHHHHHHHHcCCcEEEEEe
Q 045545 30 VTGVLEGKRVVVVDDSIVR--GT--TSSKIVRLLKEAGAKEVHMRI 71 (158)
Q Consensus 30 ~~~~v~gk~vliVDDvi~T--G~--Tl~~~~~~L~~~Ga~~V~v~v 71 (158)
+.++++|++|+||-..... -. -+..+++.++..||++|.+++
T Consensus 41 i~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~a~r~~~a~~i~~Vi 86 (116)
T PF13793_consen 41 IPESVRGKDVFIIQSTSPPVNDNLMELLLLIDALRRAGAKRITLVI 86 (116)
T ss_dssp ESS--TTSEEEEE---SSSHHHHHHHHHHHHHHHHHTTBSEEEEEE
T ss_pred ecccccCCceEEEEecCCchhHHHHHHHHHHHHHHHcCCcEEEEec
Confidence 4578999999999998865 22 234477889999999999754
No 88
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=58.09 E-value=21 Score=23.67 Aligned_cols=32 Identities=31% Similarity=0.470 Sum_probs=27.8
Q ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEE
Q 045545 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69 (158)
Q Consensus 35 ~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v 69 (158)
+++.++++.. +|.+...++..|+..|-..+++
T Consensus 55 ~~~~ivv~c~---~g~~s~~a~~~l~~~G~~~v~~ 86 (96)
T cd01444 55 RDRPVVVYCY---HGNSSAQLAQALREAGFTDVRS 86 (96)
T ss_pred CCCCEEEEeC---CCChHHHHHHHHHHcCCceEEE
Confidence 6788999988 8889999999999999888774
No 89
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=57.04 E-value=24 Score=23.79 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=25.9
Q ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEE
Q 045545 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69 (158)
Q Consensus 35 ~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v 69 (158)
++++++++++ +|.....++..|+..|-..|++
T Consensus 55 ~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v~~ 86 (96)
T cd01529 55 RATRYVLTCD---GSLLARFAAQELLALGGKPVAL 86 (96)
T ss_pred CCCCEEEEeC---ChHHHHHHHHHHHHcCCCCEEE
Confidence 5778999975 6777778888899999887774
No 90
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=55.42 E-value=41 Score=26.45 Aligned_cols=36 Identities=19% Similarity=0.371 Sum_probs=24.6
Q ss_pred CCCEEEE--------Eecc-----ccccHHHHHHHHHHHHcCCcEEEEE
Q 045545 35 EGKRVVV--------VDDS-----IVRGTTSSKIVRLLKEAGAKEVHMR 70 (158)
Q Consensus 35 ~gk~vli--------VDDv-----i~TG~Tl~~~~~~L~~~Ga~~V~v~ 70 (158)
+||+||| ||+| .+||.+=.+.++.+..+|+....+.
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~ 50 (185)
T PF04127_consen 2 KGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIH 50 (185)
T ss_dssp TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEe
Confidence 4555555 5666 6799999999999999999876653
No 91
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=50.01 E-value=39 Score=28.06 Aligned_cols=34 Identities=29% Similarity=0.341 Sum_probs=29.7
Q ss_pred cCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEE
Q 045545 33 VLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMR 70 (158)
Q Consensus 33 ~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~ 70 (158)
+++||+|+|+ -+|++.+.++..|.+.|++.|.++
T Consensus 122 ~~~~k~vlvl----GaGGaarai~~aL~~~G~~~i~I~ 155 (282)
T TIGR01809 122 PLAGFRGLVI----GAGGTSRAAVYALASLGVTDITVI 155 (282)
T ss_pred ccCCceEEEE----cCcHHHHHHHHHHHHcCCCeEEEE
Confidence 4678999866 689999999999999999999874
No 92
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=47.41 E-value=45 Score=22.58 Aligned_cols=33 Identities=36% Similarity=0.454 Sum_probs=25.7
Q ss_pred CCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEE
Q 045545 34 LEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69 (158)
Q Consensus 34 v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v 69 (158)
-+++.++++.. +|.....++..|++.|-..++.
T Consensus 59 ~~~~~ivvyC~---~G~rs~~a~~~L~~~G~~~v~~ 91 (101)
T cd01518 59 LKGKKVLMYCT---GGIRCEKASAYLKERGFKNVYQ 91 (101)
T ss_pred cCCCEEEEECC---CchhHHHHHHHHHHhCCcceee
Confidence 36778888875 6777778888899999887764
No 93
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=43.94 E-value=41 Score=29.65 Aligned_cols=42 Identities=10% Similarity=0.236 Sum_probs=30.7
Q ss_pred ccccCCCCEEEEEecccc---------------ccHHHHH---HHHHHHHcCCcEEEEEee
Q 045545 30 VTGVLEGKRVVVVDDSIV---------------RGTTSSK---IVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 30 ~~~~v~gk~vliVDDvi~---------------TG~Tl~~---~~~~L~~~Ga~~V~v~v~ 72 (158)
+..+++|++|+||-+... .-..+.+ +++.|+ +||++|.+++.
T Consensus 71 i~~~Vrg~dV~ivqs~~~~~v~~~~~~~~~~~p~nd~lmeLll~idalr-agA~rIt~ViP 130 (382)
T PRK06827 71 ILESVRGKDIYILQDVGNYSVTYNMFGEKNHMSPDDHFQDLKRTIDAIR-GKARRITVIMP 130 (382)
T ss_pred ECCCCCCCeEEEEecCCcccccccccccccCCCCcHHHHHHHHHHHHHh-cCCCeEEEEee
Confidence 457789999999999642 1223334 788899 99999987543
No 94
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=42.68 E-value=77 Score=27.28 Aligned_cols=43 Identities=14% Similarity=0.225 Sum_probs=32.1
Q ss_pred ccccCCCCEEEEEeccccc-cHH---HHHHHHHHHHcCCcEEEEEee
Q 045545 30 VTGVLEGKRVVVVDDSIVR-GTT---SSKIVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 30 ~~~~v~gk~vliVDDvi~T-G~T---l~~~~~~L~~~Ga~~V~v~v~ 72 (158)
+..+++|++|+||-..... ... +..++..|+++||++|.+++.
T Consensus 62 i~~~vrg~~V~ivqs~~~p~nd~l~eLll~~~alr~~ga~ri~~ViP 108 (330)
T PRK02812 62 IQESIRGCDVYLIQPTCAPVNDHLMELLIMVDACRRASARQITAVIP 108 (330)
T ss_pred eCCCCCCCEEEEECCCCCCccHHHHHHHHHHHHHHHhCCceEEEEEe
Confidence 4577899999999986432 333 344778899999999987654
No 95
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=41.82 E-value=72 Score=27.07 Aligned_cols=43 Identities=28% Similarity=0.292 Sum_probs=36.8
Q ss_pred ccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEee
Q 045545 30 VTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 30 ~~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~ 72 (158)
+.+.+.||+|+||--=-..........+.|+++|+.....+.+
T Consensus 77 v~g~L~g~~V~vV~~p~a~~~~~~~v~~~L~~AGA~v~g~i~l 119 (308)
T PF11382_consen 77 VAGRLTGRSVAVVTLPGADDEDVDAVRELLEQAGATVTGRITL 119 (308)
T ss_pred hcCccCCCEEEEEEcCCCChHHHHHHHHHHHHCCCeEEEEEEE
Confidence 4688999999999976667788888999999999998887655
No 96
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=41.81 E-value=39 Score=28.62 Aligned_cols=43 Identities=16% Similarity=0.201 Sum_probs=31.5
Q ss_pred ccccCCCCEEEEEeccccc-cHH---HHHHHHHHHHcCCcEEEEEee
Q 045545 30 VTGVLEGKRVVVVDDSIVR-GTT---SSKIVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 30 ~~~~v~gk~vliVDDvi~T-G~T---l~~~~~~L~~~Ga~~V~v~v~ 72 (158)
+..+++|++|+||-..... -.. +...++.++++|+++|.+++.
T Consensus 32 i~~~v~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~~~a~~i~~ViP 78 (302)
T PLN02369 32 LQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKRITAVIP 78 (302)
T ss_pred ECCCCCCCeEEEEecCCCCcchHHHHHHHHHHHHHHcCCCeEEEEee
Confidence 4577899999999986522 222 345778899999999987543
No 97
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=40.29 E-value=61 Score=28.76 Aligned_cols=42 Identities=38% Similarity=0.548 Sum_probs=34.8
Q ss_pred cccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEeecCCce
Q 045545 31 TGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPII 77 (158)
Q Consensus 31 ~~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~ 77 (158)
..+.+||+|++| -+|.|...++-.|.+.| ++|.+..=+|+..
T Consensus 170 ~~~~~GKrV~VI----G~GaSA~di~~~l~~~g-a~vt~~qRs~~~~ 211 (443)
T COG2072 170 PEDLRGKRVLVI----GAGASAVDIAPELAEVG-ASVTLSQRSPPHI 211 (443)
T ss_pred ccccCCCeEEEE----CCCccHHHHHHHHHhcC-CeeEEEecCCCce
Confidence 467899999975 69999999999999999 8888877666544
No 98
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=39.91 E-value=1e+02 Score=25.79 Aligned_cols=43 Identities=21% Similarity=0.480 Sum_probs=31.2
Q ss_pred ccccCCCCEEEEEeccccccHH---HHHHHHHHHHcCCcEEEEEee
Q 045545 30 VTGVLEGKRVVVVDDSIVRGTT---SSKIVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 30 ~~~~v~gk~vliVDDvi~TG~T---l~~~~~~L~~~Ga~~V~v~v~ 72 (158)
+..+++|++|+|+-..-+-... +..+++.|+++||++|.+++.
T Consensus 40 i~~~v~g~~v~i~~~~~~~~d~l~ell~~~~alr~~ga~~i~~v~P 85 (285)
T PRK00934 40 ILGEIDGEDVVIISTTYPQDENLVELLLLIDALRDEGAKSITLVIP 85 (285)
T ss_pred ECCCcCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 3467899999998875433332 344778899999999987643
No 99
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=39.51 E-value=61 Score=27.49 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=30.6
Q ss_pred ccccCCCCEEEEEeccccc-cHH---HHHHHHHHHHcCCcEEEEEee
Q 045545 30 VTGVLEGKRVVVVDDSIVR-GTT---SSKIVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 30 ~~~~v~gk~vliVDDvi~T-G~T---l~~~~~~L~~~Ga~~V~v~v~ 72 (158)
+..++.|++|+||=+.-.. -.. +..+++.++++||++|.+++.
T Consensus 41 i~~~v~g~~V~ii~s~~~~~nd~l~eLll~~~alr~~ga~~i~lViP 87 (309)
T PRK01259 41 INENVRGKDVFIIQSTCAPTNDNLMELLIMIDALKRASAGRITAVIP 87 (309)
T ss_pred eCCCCCCCEEEEECCCCCCCcHHHHHHHHHHHHHHHcCCceEEEEee
Confidence 3567899999999765222 222 445778899999999987543
No 100
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=39.46 E-value=12 Score=22.96 Aligned_cols=18 Identities=22% Similarity=0.901 Sum_probs=14.2
Q ss_pred CCcccccc-cCcCCcCcch
Q 045545 128 QNFCYACF-SGKYPVKPEE 145 (158)
Q Consensus 128 ~~~~~~cf-~~~y~~~~~~ 145 (158)
.++|..|| .|+||.+-.-
T Consensus 23 ~dLC~~CF~~G~f~~~~~s 41 (45)
T cd02336 23 YDLCPSCYQEGRFPSNFQS 41 (45)
T ss_pred cccChHHHhCcCCCCCCcc
Confidence 67999999 7888876443
No 101
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=38.85 E-value=68 Score=21.58 Aligned_cols=30 Identities=27% Similarity=0.422 Sum_probs=24.0
Q ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCcEEE
Q 045545 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVH 68 (158)
Q Consensus 35 ~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~ 68 (158)
+++.++++ +.+|.....+++.|++.|-. ++
T Consensus 60 ~~~~ivv~---C~~G~rs~~aa~~L~~~G~~-~~ 89 (100)
T cd01523 60 DDQEVTVI---CAKEGSSQFVAELLAERGYD-VD 89 (100)
T ss_pred CCCeEEEE---cCCCCcHHHHHHHHHHcCce-eE
Confidence 56777776 56888888999999999987 54
No 102
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=37.54 E-value=93 Score=26.33 Aligned_cols=43 Identities=19% Similarity=0.166 Sum_probs=31.5
Q ss_pred ccccCCCCEEEEEeccccccHH---HHHHHHHHHHcCCcEEEEEee
Q 045545 30 VTGVLEGKRVVVVDDSIVRGTT---SSKIVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 30 ~~~~v~gk~vliVDDvi~TG~T---l~~~~~~L~~~Ga~~V~v~v~ 72 (158)
+..+++|++|+||-....--.. +.-+++.|+++||++|.+++.
T Consensus 43 i~~~v~g~~V~ivqs~~~~n~~l~elll~~~alr~~~a~~i~~ViP 88 (301)
T PRK07199 43 LDSPVAGRTVVLVCSLDRPDEKLLPLLFAAEAARELGARRVGLVAP 88 (301)
T ss_pred ECCCCCCCEEEEECCCCCCcHHHHHHHHHHHHHHHcCCCeEEEEee
Confidence 3567899999999986543232 334678899999999987543
No 103
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=37.21 E-value=97 Score=26.25 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=31.7
Q ss_pred ccccCCCCEEEEEeccccc-cHH---HHHHHHHHHHcCCcEEEEEee
Q 045545 30 VTGVLEGKRVVVVDDSIVR-GTT---SSKIVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 30 ~~~~v~gk~vliVDDvi~T-G~T---l~~~~~~L~~~Ga~~V~v~v~ 72 (158)
+..+++|++|+||-..... -.. +...+..++++||++|.+++.
T Consensus 30 i~~~v~g~~v~ii~s~~~p~nd~l~ell~~~~a~r~~~a~~i~~ViP 76 (304)
T PRK03092 30 FEESVRGCDAFVLQSHTAPINKWLMEQLIMIDALKRASAKRITVVLP 76 (304)
T ss_pred ECCCCCCCEEEEEeCCCCCCcHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 4578899999998875432 233 345778899999999997654
No 104
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=37.17 E-value=67 Score=21.50 Aligned_cols=35 Identities=37% Similarity=0.441 Sum_probs=25.7
Q ss_pred cccCCCCEEEEEeccccccH-HHHHHHHHHHHcCCcEEEEE
Q 045545 31 TGVLEGKRVVVVDDSIVRGT-TSSKIVRLLKEAGAKEVHMR 70 (158)
Q Consensus 31 ~~~v~gk~vliVDDvi~TG~-Tl~~~~~~L~~~Ga~~V~v~ 70 (158)
..+++||-||+ .+|. ++..-++..+++||.-+.++
T Consensus 29 ~~~~~gkIvlv-----~rg~~~~~~k~~~a~~~GA~gvIi~ 64 (101)
T PF02225_consen 29 GSDVKGKIVLV-----ERGSCSFDDKVRNAQKAGAKGVIIY 64 (101)
T ss_dssp TSTCTTSEEEE-----ESTSSCHHHHHHHHHHTTESEEEEE
T ss_pred CccccceEEEE-----ecCCCCHHHHHHHHHHcCCEEEEEE
Confidence 46789986555 4444 56777888899999988764
No 105
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=36.29 E-value=55 Score=28.21 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=31.6
Q ss_pred ccccCCCCEEEEEeccccc-cHH---HHHHHHHHHHcCCcEEEEEee
Q 045545 30 VTGVLEGKRVVVVDDSIVR-GTT---SSKIVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 30 ~~~~v~gk~vliVDDvi~T-G~T---l~~~~~~L~~~Ga~~V~v~v~ 72 (158)
+..+++|++|+||-++... -.. +..++..|+++||++|.+++.
T Consensus 50 i~~~vrg~dV~ivqs~~~p~nd~l~eLll~~~alr~~~a~~i~~ViP 96 (332)
T PRK00553 50 FDESVRNKDVVIFQSTCSPVNDSLMELLIAIDALKRGSAKSITAILP 96 (332)
T ss_pred ECCCCCCCEEEEEcCCCCCCchHHHHHHHHHHHHHHcCCCeEEEEee
Confidence 4577899999999886432 222 344778899999999987653
No 106
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=36.28 E-value=62 Score=24.91 Aligned_cols=36 Identities=33% Similarity=0.552 Sum_probs=24.8
Q ss_pred cCCCCEEEEEecc-ccccHHHHHHHHHHHHcCCcEEEEEe
Q 045545 33 VLEGKRVVVVDDS-IVRGTTSSKIVRLLKEAGAKEVHMRI 71 (158)
Q Consensus 33 ~v~gk~vliVDDv-i~TG~Tl~~~~~~L~~~Ga~~V~v~v 71 (158)
.++||+|+|+-|. ---|-.+. +.++..|+..|+..+
T Consensus 2 ~l~gkKviiiGdRDGiPgpAie---~c~~~~gaevvfs~T 38 (150)
T PF04723_consen 2 ILEGKKVIIIGDRDGIPGPAIE---ECVKTAGAEVVFSST 38 (150)
T ss_pred ccCCcEEEEEecCCCCCcHHHH---HHHHhcCceEEEEee
Confidence 3689999999986 22344444 456678998888644
No 107
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=35.77 E-value=88 Score=27.20 Aligned_cols=35 Identities=9% Similarity=0.137 Sum_probs=30.9
Q ss_pred ccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEE
Q 045545 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMR 70 (158)
Q Consensus 32 ~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~ 70 (158)
+++.||+|++| -+|..-..+++.|.+.|+..+.+.
T Consensus 170 ~~l~~k~vLvI----GaGem~~l~a~~L~~~g~~~i~v~ 204 (338)
T PRK00676 170 QKSKKASLLFI----GYSEINRKVAYYLQRQGYSRITFC 204 (338)
T ss_pred CCccCCEEEEE----cccHHHHHHHHHHHHcCCCEEEEE
Confidence 77899999986 589999999999999999888763
No 108
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=35.69 E-value=86 Score=21.10 Aligned_cols=32 Identities=22% Similarity=0.376 Sum_probs=24.5
Q ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEE
Q 045545 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69 (158)
Q Consensus 35 ~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v 69 (158)
.++.+++++ .+|.....++..|+..|-..|++
T Consensus 64 ~~~~vv~~c---~~g~~s~~~a~~L~~~G~~~v~~ 95 (105)
T cd01525 64 KGKIIVIVS---HSHKHAALFAAFLVKCGVPRVCI 95 (105)
T ss_pred cCCeEEEEe---CCCccHHHHHHHHHHcCCCCEEE
Confidence 377788876 45666777888999999988774
No 109
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=35.54 E-value=77 Score=21.19 Aligned_cols=32 Identities=25% Similarity=0.426 Sum_probs=24.3
Q ss_pred CCCEEEEEeccccccHH--HHHHHHHHHHcCCcEEEE
Q 045545 35 EGKRVVVVDDSIVRGTT--SSKIVRLLKEAGAKEVHM 69 (158)
Q Consensus 35 ~gk~vliVDDvi~TG~T--l~~~~~~L~~~Ga~~V~v 69 (158)
+++.++++.+ +|.. ...+++.|++.|-+.|+.
T Consensus 49 ~~~~ivl~c~---~G~~~~s~~aa~~L~~~G~~~v~~ 82 (92)
T cd01532 49 RDTPIVVYGE---GGGEDLAPRAARRLSELGYTDVAL 82 (92)
T ss_pred CCCeEEEEeC---CCCchHHHHHHHHHHHcCccCEEE
Confidence 4678888865 5543 567888999999988874
No 110
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=35.36 E-value=95 Score=26.52 Aligned_cols=43 Identities=16% Similarity=0.307 Sum_probs=31.4
Q ss_pred ccccCCCCEEEEEeccccc-cH---HHHHHHHHHHHcCCcEEEEEee
Q 045545 30 VTGVLEGKRVVVVDDSIVR-GT---TSSKIVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 30 ~~~~v~gk~vliVDDvi~T-G~---Tl~~~~~~L~~~Ga~~V~v~v~ 72 (158)
+..+++|++|+||-..... -. -+..+++.||.+||++|.+++.
T Consensus 46 i~~~vrg~dV~iv~s~~~~~nd~lmelll~~~alr~~~a~~i~~V~P 92 (320)
T PRK02269 46 IEESIRGHHVFILQSTSSPVNDNLMEILIMVDALKRASAESINVVMP 92 (320)
T ss_pred ECCCCCCCEEEEEecCCCCccchHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 4577899999999875431 12 2455778899999999987543
No 111
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=35.26 E-value=96 Score=25.48 Aligned_cols=35 Identities=23% Similarity=0.428 Sum_probs=29.5
Q ss_pred cCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEe
Q 045545 33 VLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRI 71 (158)
Q Consensus 33 ~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v 71 (158)
++++|+++|+ -+|++-..++..|.+.|+..|.++.
T Consensus 120 ~~~~k~vlVl----GaGg~a~ai~~aL~~~g~~~V~v~~ 154 (278)
T PRK00258 120 DLKGKRILIL----GAGGAARAVILPLLDLGVAEITIVN 154 (278)
T ss_pred CCCCCEEEEE----cCcHHHHHHHHHHHHcCCCEEEEEe
Confidence 5788999877 4699999999999999988888743
No 112
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=35.09 E-value=95 Score=26.20 Aligned_cols=35 Identities=31% Similarity=0.441 Sum_probs=30.2
Q ss_pred ccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEE
Q 045545 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMR 70 (158)
Q Consensus 32 ~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~ 70 (158)
.+++|++++|+ -.|++.+.++-.|.+.|+++|.|+
T Consensus 122 ~~~~~~~vlil----GAGGAarAv~~aL~~~g~~~i~V~ 156 (283)
T COG0169 122 VDVTGKRVLIL----GAGGAARAVAFALAEAGAKRITVV 156 (283)
T ss_pred cccCCCEEEEE----CCcHHHHHHHHHHHHcCCCEEEEE
Confidence 35568989875 699999999999999999999874
No 113
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=34.79 E-value=79 Score=21.27 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=26.1
Q ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEE
Q 045545 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69 (158)
Q Consensus 35 ~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v 69 (158)
+++.|+++.. +|.+...++..|+..|-+.|+.
T Consensus 65 ~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v~~ 96 (106)
T cd01519 65 KDKELIFYCK---AGVRSKAAAELARSLGYENVGN 96 (106)
T ss_pred CCCeEEEECC---CcHHHHHHHHHHHHcCCcccee
Confidence 5788999865 5778788899999999887774
No 114
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=34.53 E-value=1.2e+02 Score=27.49 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=31.6
Q ss_pred ccccCCCCEEEEEeccccc-cHH---HHHHHHHHHHcCCcEEEEEee
Q 045545 30 VTGVLEGKRVVVVDDSIVR-GTT---SSKIVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 30 ~~~~v~gk~vliVDDvi~T-G~T---l~~~~~~L~~~Ga~~V~v~v~ 72 (158)
+..+++|++|+||-..... -.. +.-+++.|+.+||++|.+++.
T Consensus 160 i~e~VrG~dV~IVqS~~~pvNd~LmELLllidAlr~agAkrItlViP 206 (439)
T PTZ00145 160 FLESIRGKDVYIIQPTCPPVNENLIELLLMISTCRRASAKKITAVIP 206 (439)
T ss_pred ECCCcCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHhccCeEEEEee
Confidence 3578899999999985432 222 344778899999999998654
No 115
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=34.17 E-value=1e+02 Score=20.79 Aligned_cols=32 Identities=25% Similarity=0.325 Sum_probs=25.9
Q ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEE
Q 045545 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69 (158)
Q Consensus 35 ~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v 69 (158)
+++.++++.+ +|.....++..|++.|-..++.
T Consensus 57 ~~~~vv~~c~---~g~rs~~~~~~l~~~G~~~v~~ 88 (101)
T cd01528 57 PDKDIVVLCH---HGGRSMQVAQWLLRQGFENVYN 88 (101)
T ss_pred CCCeEEEEeC---CCchHHHHHHHHHHcCCccEEE
Confidence 4788999975 5777888888999999887774
No 116
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=32.93 E-value=1e+02 Score=20.37 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=24.0
Q ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEE
Q 045545 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69 (158)
Q Consensus 35 ~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v 69 (158)
.+++++++.+ +|.....++..|++.|. .+..
T Consensus 50 ~~~~vvl~c~---~g~~a~~~a~~L~~~G~-~v~~ 80 (90)
T cd01524 50 KDKEIIVYCA---VGLRGYIAARILTQNGF-KVKN 80 (90)
T ss_pred CCCcEEEEcC---CChhHHHHHHHHHHCCC-CEEE
Confidence 3577888865 57788888999999998 6664
No 117
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=32.45 E-value=97 Score=26.14 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=30.1
Q ss_pred ccccCCCCEEEEE-eccccc-cH---HHHHHHHHHHHcCCcEEEEEee
Q 045545 30 VTGVLEGKRVVVV-DDSIVR-GT---TSSKIVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 30 ~~~~v~gk~vliV-DDvi~T-G~---Tl~~~~~~L~~~Ga~~V~v~v~ 72 (158)
+..+++|++|+|+ -..... -. -+..+++.++++||++|.+++.
T Consensus 41 i~~~v~g~~v~iv~~s~~~~~~~~l~el~~~~~a~r~~ga~~i~~v~P 88 (308)
T TIGR01251 41 INESVRGKDVFIIQQSTSAPVNDNLMELLIMIDALKRASAKSITAVIP 88 (308)
T ss_pred ECCCCCCCeEEEEeCCCCCCccHHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 3577899999999 554311 22 2445778899999999987654
No 118
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=32.10 E-value=1.1e+02 Score=23.10 Aligned_cols=39 Identities=26% Similarity=0.224 Sum_probs=26.5
Q ss_pred ccCCCCEEEEEeccccc--------cHHHHHHHHHHHHcCCcEEEEE
Q 045545 32 GVLEGKRVVVVDDSIVR--------GTTSSKIVRLLKEAGAKEVHMR 70 (158)
Q Consensus 32 ~~v~gk~vliVDDvi~T--------G~Tl~~~~~~L~~~Ga~~V~v~ 70 (158)
-+++||-||+....-.. ..+...-++.+.++||.-|.++
T Consensus 46 iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~ 92 (137)
T cd04820 46 LDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITL 92 (137)
T ss_pred CCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEE
Confidence 48899977666544321 1346667788899999977753
No 119
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=31.79 E-value=63 Score=21.56 Aligned_cols=32 Identities=28% Similarity=0.219 Sum_probs=25.0
Q ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEE
Q 045545 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69 (158)
Q Consensus 35 ~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v 69 (158)
+++.+++.++ +|.....++..|+..|...|+.
T Consensus 60 ~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v~~ 91 (103)
T cd01447 60 EDKPFVFYCA---SGWRSALAGKTLQDMGLKPVYN 91 (103)
T ss_pred CCCeEEEEcC---CCCcHHHHHHHHHHcChHHhEe
Confidence 5678999875 5777778889999999876663
No 120
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=31.30 E-value=1.3e+02 Score=19.96 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=23.6
Q ss_pred EEEEEeccccccHHHHHHHHHHHHc-CCcEEEE
Q 045545 38 RVVVVDDSIVRGTTSSKIVRLLKEA-GAKEVHM 69 (158)
Q Consensus 38 ~vliVDDvi~TG~Tl~~~~~~L~~~-Ga~~V~v 69 (158)
.+.+++|-..+-.++.++.+.|++. +...+.+
T Consensus 13 ~~~vi~D~ahNp~s~~a~l~~l~~~~~~~~~i~ 45 (91)
T PF02875_consen 13 GPTVIDDYAHNPDSIRALLEALKELYPKGRIIA 45 (91)
T ss_dssp TEEEEEET--SHHHHHHHHHHHHHHCTTSEEEE
T ss_pred CcEEEEECCCCHHHHHHHHHHHHHhccCCcEEE
Confidence 3677777999999999999999987 5555554
No 121
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=31.23 E-value=1.2e+02 Score=23.00 Aligned_cols=39 Identities=23% Similarity=0.123 Sum_probs=26.5
Q ss_pred ccCCCCEEEEEecccc-------ccH-------HHHHHHHHHHHcCCcEEEEE
Q 045545 32 GVLEGKRVVVVDDSIV-------RGT-------TSSKIVRLLKEAGAKEVHMR 70 (158)
Q Consensus 32 ~~v~gk~vliVDDvi~-------TG~-------Tl~~~~~~L~~~Ga~~V~v~ 70 (158)
-+++||-||+..+--. .|+ +...=.+..+++||.-+.++
T Consensus 44 ~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii 96 (142)
T cd04814 44 LDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIV 96 (142)
T ss_pred CCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEE
Confidence 3899998877654321 111 56667788889999977764
No 122
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=30.81 E-value=1.7e+02 Score=20.96 Aligned_cols=74 Identities=24% Similarity=0.297 Sum_probs=44.8
Q ss_pred ccccHHHHHHHHHHHHcCCcEEEEEeecCCceecceeeecCCCHHHHHhcCccchhhheeeccCcccccChHHHHHHhcC
Q 045545 46 IVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFIGCDSLAFLLIDSLNKMLGD 125 (158)
Q Consensus 46 i~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~~~~~~gi~~~~~~eli~~~~~~~~i~~~i~tdsi~~~sl~~l~~~~~~ 125 (158)
+-+|....++++.+++.|.+.|.+..- + +.......... +....--+++.-+|++.+.+++.+.+
T Consensus 8 anrGeia~r~~ra~r~~Gi~tv~v~s~------~-----d~~s~~~~~ad----~~~~~~~~~~~~~yl~~e~I~~ia~~ 72 (110)
T PF00289_consen 8 ANRGEIAVRIIRALRELGIETVAVNSN------P-----DTVSTHVDMAD----EAYFEPPGPSPESYLNIEAIIDIARK 72 (110)
T ss_dssp SS-HHHHHHHHHHHHHTTSEEEEEEEG------G-----GTTGHHHHHSS----EEEEEESSSGGGTTTSHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHhCCcceeccCc------h-----hcccccccccc----cceecCcchhhhhhccHHHHhhHhhh
Confidence 468888999999999999998886331 1 11111111111 11111123455678999999998864
Q ss_pred CCCCcccccccC
Q 045545 126 DSQNFCYACFSG 137 (158)
Q Consensus 126 ~~~~~~~~cf~~ 137 (158)
.-|..-|-|
T Consensus 73 ---~g~~~i~pG 81 (110)
T PF00289_consen 73 ---EGADAIHPG 81 (110)
T ss_dssp ---TTESEEEST
T ss_pred ---hcCcccccc
Confidence 247777766
No 123
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=30.55 E-value=92 Score=23.35 Aligned_cols=34 Identities=41% Similarity=0.537 Sum_probs=26.6
Q ss_pred ccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEE
Q 045545 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMR 70 (158)
Q Consensus 32 ~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~ 70 (158)
.+.+||+|+|| -+|.|...++..|.+.| ++|.++
T Consensus 163 ~~~~~k~V~VV----G~G~SA~d~a~~l~~~g-~~V~~~ 196 (203)
T PF13738_consen 163 EDFKGKRVVVV----GGGNSAVDIAYALAKAG-KSVTLV 196 (203)
T ss_dssp GGCTTSEEEEE------SHHHHHHHHHHTTTC-SEEEEE
T ss_pred hhcCCCcEEEE----cChHHHHHHHHHHHhhC-CEEEEE
Confidence 46789999965 68999999999999888 777764
No 124
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=30.21 E-value=60 Score=25.35 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=19.3
Q ss_pred EEEEEeccccccHHHHHHH-HHHHHcCCcEEEEEeec
Q 045545 38 RVVVVDDSIVRGTTSSKIV-RLLKEAGAKEVHMRIAS 73 (158)
Q Consensus 38 ~vliVDDvi~TG~Tl~~~~-~~L~~~Ga~~V~v~v~~ 73 (158)
.=+||||++..+..+...+ +.|. |....+|.+.|
T Consensus 84 ~~VIvD~v~~~~~~l~d~l~~~L~--~~~vl~VgV~C 118 (174)
T PF07931_consen 84 NNVIVDDVFLGPRWLQDCLRRLLA--GLPVLFVGVRC 118 (174)
T ss_dssp -EEEEEE--TTTHHHHHHHHHHHT--TS-EEEEEEE-
T ss_pred CCEEEecCccCcHHHHHHHHHHhC--CCceEEEEEEC
Confidence 4678999999998877776 4453 44444544433
No 125
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=29.65 E-value=1.4e+02 Score=25.74 Aligned_cols=41 Identities=7% Similarity=0.076 Sum_probs=30.4
Q ss_pred cccCCCCEEEEEeccccccHHHHH---HHHHHHHcCCcEEEEEee
Q 045545 31 TGVLEGKRVVVVDDSIVRGTTSSK---IVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 31 ~~~v~gk~vliVDDvi~TG~Tl~~---~~~~L~~~Ga~~V~v~v~ 72 (158)
..+++|++|+||-..... ..+.+ ++..|+++||++|.+++.
T Consensus 61 ~~~vrg~~V~ivqs~~~p-d~lmELLl~~dAlr~~ga~~i~~ViP 104 (326)
T PLN02297 61 AHGIRGQHVAFLASFSSP-AVIFEQLSVIYALPKLFVASFTLVLP 104 (326)
T ss_pred CCCcCCCeEEEECCCCCC-hHHHHHHHHHHHHHHcCCCEEEEEee
Confidence 468899999998775433 33333 668899999999998654
No 126
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=28.90 E-value=1.2e+02 Score=25.45 Aligned_cols=34 Identities=15% Similarity=0.194 Sum_probs=28.9
Q ss_pred cCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEE
Q 045545 33 VLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMR 70 (158)
Q Consensus 33 ~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~ 70 (158)
+++||+++| +-+|++.+.++-.|.+.|+++++++
T Consensus 124 ~~~~k~vli----lGaGGaarAi~~aL~~~g~~~i~i~ 157 (283)
T PRK14027 124 NAKLDSVVQ----VGAGGVGNAVAYALVTHGVQKLQVA 157 (283)
T ss_pred CcCCCeEEE----ECCcHHHHHHHHHHHHCCCCEEEEE
Confidence 467888875 5789999999999999999998874
No 127
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=28.07 E-value=1.4e+02 Score=24.97 Aligned_cols=35 Identities=26% Similarity=0.250 Sum_probs=28.9
Q ss_pred ccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEE
Q 045545 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMR 70 (158)
Q Consensus 32 ~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~ 70 (158)
.+++||+++|+ -+|++.++++-.|...|++++.++
T Consensus 120 ~~~~~k~vlvl----GaGGaarAi~~~l~~~g~~~i~i~ 154 (288)
T PRK12749 120 FDIKGKTMVLL----GAGGASTAIGAQGAIEGLKEIKLF 154 (288)
T ss_pred CCcCCCEEEEE----CCcHHHHHHHHHHHHCCCCEEEEE
Confidence 35788988865 589998888888999999999874
No 128
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=27.80 E-value=1.5e+02 Score=19.74 Aligned_cols=31 Identities=29% Similarity=0.491 Sum_probs=23.9
Q ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEE
Q 045545 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69 (158)
Q Consensus 35 ~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v 69 (158)
+++.+++..+ +|.....++..|+..|-. ++.
T Consensus 55 ~~~~iv~~c~---~G~rs~~aa~~L~~~G~~-v~~ 85 (95)
T cd01534 55 RGARIVLADD---DGVRADMTASWLAQMGWE-VYV 85 (95)
T ss_pred CCCeEEEECC---CCChHHHHHHHHHHcCCE-EEE
Confidence 5778888865 577777788889999987 653
No 129
>PRK05320 rhodanese superfamily protein; Provisional
Probab=27.61 E-value=1.1e+02 Score=25.20 Aligned_cols=33 Identities=30% Similarity=0.376 Sum_probs=28.4
Q ss_pred CCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEE
Q 045545 34 LEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69 (158)
Q Consensus 34 v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v 69 (158)
+++|.++++ .++|.....++..|++.|-..|+-
T Consensus 173 ~kdk~Ivvy---C~~G~Rs~~Aa~~L~~~Gf~~V~~ 205 (257)
T PRK05320 173 LAGKTVVSF---CTGGIRCEKAAIHMQEVGIDNVYQ 205 (257)
T ss_pred cCCCeEEEE---CCCCHHHHHHHHHHHHcCCcceEE
Confidence 478888888 788999999999999999987773
No 130
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=26.97 E-value=1.3e+02 Score=20.07 Aligned_cols=32 Identities=13% Similarity=0.137 Sum_probs=24.1
Q ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEE
Q 045545 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69 (158)
Q Consensus 35 ~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v 69 (158)
+++.++++ ..+|.....++..|++.|...++.
T Consensus 53 ~~~~iv~~---c~~g~~s~~~~~~L~~~g~~~v~~ 84 (99)
T cd01527 53 GANAIIFH---CRSGMRTQQNAERLAAISAGEAYV 84 (99)
T ss_pred CCCcEEEE---eCCCchHHHHHHHHHHcCCccEEE
Confidence 45666664 567888888999999998876663
No 131
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=26.95 E-value=1.6e+02 Score=24.40 Aligned_cols=34 Identities=26% Similarity=0.365 Sum_probs=27.5
Q ss_pred cCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEE
Q 045545 33 VLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMR 70 (158)
Q Consensus 33 ~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~ 70 (158)
.++||+++|+ -+|+.-.+++..|.+.|+++|.++
T Consensus 123 ~~~~k~vlI~----GAGGagrAia~~La~~G~~~V~I~ 156 (289)
T PRK12548 123 DVKGKKLTVI----GAGGAATAIQVQCALDGAKEITIF 156 (289)
T ss_pred CcCCCEEEEE----CCcHHHHHHHHHHHHCCCCEEEEE
Confidence 4678888865 457888889999999999988874
No 132
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=26.87 E-value=29 Score=20.83 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=16.3
Q ss_pred ccccccHHHHHHHHHHHHc
Q 045545 44 DSIVRGTTSSKIVRLLKEA 62 (158)
Q Consensus 44 Dvi~TG~Tl~~~~~~L~~~ 62 (158)
.+++.|.|+.++.+.++++
T Consensus 23 g~~t~G~t~eea~~~~~ea 41 (48)
T PF03681_consen 23 GCFTQGDTLEEALENAKEA 41 (48)
T ss_dssp TCEEEESSHHHHHHHHHHH
T ss_pred ChhhcCCCHHHHHHHHHHH
Confidence 4689999999999998864
No 133
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=26.37 E-value=1.3e+02 Score=26.73 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=30.3
Q ss_pred ccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEE
Q 045545 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMR 70 (158)
Q Consensus 32 ~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~ 70 (158)
+++.|++++| +-+|+.-..+++.|.+.|+..+.++
T Consensus 177 ~~l~~kkvlv----iGaG~~a~~va~~L~~~g~~~I~V~ 211 (414)
T PRK13940 177 DNISSKNVLI----IGAGQTGELLFRHVTALAPKQIMLA 211 (414)
T ss_pred cCccCCEEEE----EcCcHHHHHHHHHHHHcCCCEEEEE
Confidence 5788999986 4689999999999999999988863
No 134
>PRK09620 hypothetical protein; Provisional
Probab=25.39 E-value=1.6e+02 Score=23.80 Aligned_cols=35 Identities=29% Similarity=0.508 Sum_probs=26.8
Q ss_pred CCCEEEEE--------ecc-----ccccHHHHHHHHHHHHcCCcEEEE
Q 045545 35 EGKRVVVV--------DDS-----IVRGTTSSKIVRLLKEAGAKEVHM 69 (158)
Q Consensus 35 ~gk~vliV--------DDv-----i~TG~Tl~~~~~~L~~~Ga~~V~v 69 (158)
+||+|+|- |+| -+||-.=...++.|.+.|+..+.+
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li 49 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYL 49 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEE
Confidence 57777776 777 467888888999999999975544
No 135
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=25.21 E-value=1e+02 Score=26.43 Aligned_cols=43 Identities=12% Similarity=0.249 Sum_probs=30.5
Q ss_pred ccccCCCCEEEEEeccccc-cHH---HHHHHHHHHHcCCcEEEEEee
Q 045545 30 VTGVLEGKRVVVVDDSIVR-GTT---SSKIVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 30 ~~~~v~gk~vliVDDvi~T-G~T---l~~~~~~L~~~Ga~~V~v~v~ 72 (158)
+..+++|+.|+||-..-.. -.. +..+++.|+++||++|.+++.
T Consensus 50 i~~~v~g~dV~ii~s~~~~~nd~l~eLll~~~alr~~~a~~i~lViP 96 (323)
T PRK02458 50 IEESVRGDDIYIIQSTSFPVNDHLWELLIMIDACKRASANTVNVVLP 96 (323)
T ss_pred ecCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHHHcCCceEEEEEe
Confidence 3567899999999875322 223 334678899999999987653
No 136
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=25.03 E-value=1.9e+02 Score=20.11 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=25.5
Q ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEE
Q 045545 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69 (158)
Q Consensus 35 ~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v 69 (158)
+++.++++ ..+|.....++..|++.|-..+.+
T Consensus 57 ~~~~vvly---C~~G~rS~~aa~~L~~~G~~~v~~ 88 (101)
T TIGR02981 57 KNDTVKLY---CNAGRQSGMAKDILLDMGYTHAEN 88 (101)
T ss_pred CCCeEEEE---eCCCHHHHHHHHHHHHcCCCeEEe
Confidence 45667776 467888888999999999988774
No 137
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=24.96 E-value=1.3e+02 Score=20.64 Aligned_cols=32 Identities=28% Similarity=0.352 Sum_probs=24.6
Q ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEE
Q 045545 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69 (158)
Q Consensus 35 ~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v 69 (158)
+++.++++++ +|.....++..|+..|-..+++
T Consensus 77 ~~~~iv~yc~---~g~~s~~~~~~l~~~G~~~v~~ 108 (118)
T cd01449 77 PDKPVIVYCG---SGVTACVLLLALELLGYKNVRL 108 (118)
T ss_pred CCCCEEEECC---cHHHHHHHHHHHHHcCCCCeee
Confidence 6788888864 4777777888899999876664
No 138
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=24.87 E-value=1.8e+02 Score=22.25 Aligned_cols=71 Identities=18% Similarity=0.203 Sum_probs=37.5
Q ss_pred EEEEEeccccccHH-HHHHHHHHHHcCCcEEEEEeecCCceecceeeecCCCHHHHHhcCccchhhheeeccCcccccCh
Q 045545 38 RVVVVDDSIVRGTT-SSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFIGCDSLAFLLI 116 (158)
Q Consensus 38 ~vliVDDvi~TG~T-l~~~~~~L~~~Ga~~V~v~v~~~~~~~~~~~gi~~~~~~eli~~~~~~~~i~~~i~tdsi~~~sl 116 (158)
+|+.|-=.--...| +..+++.|+++|+..+.+++. |.-+++..+.+.. -.+.++++..|--...+
T Consensus 65 ~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~G----------Gvip~~d~~~l~~----~G~~~if~pgt~~~~~~ 130 (143)
T COG2185 65 DVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVG----------GVIPPGDYQELKE----MGVDRIFGPGTPIEEAL 130 (143)
T ss_pred CEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeec----------CccCchhHHHHHH----hCcceeeCCCCCHHHHH
Confidence 45555444444444 344778899999988885432 1222222333333 46777776654433334
Q ss_pred HHHHHH
Q 045545 117 DSLNKM 122 (158)
Q Consensus 117 ~~l~~~ 122 (158)
.+++..
T Consensus 131 ~~v~~~ 136 (143)
T COG2185 131 SDLLTR 136 (143)
T ss_pred HHHHHH
Confidence 444433
No 139
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=24.81 E-value=1.6e+02 Score=22.28 Aligned_cols=33 Identities=12% Similarity=-0.057 Sum_probs=25.8
Q ss_pred CCCCEEEEEeccccccH-HHHHHHHHHHHcCCcEEEE
Q 045545 34 LEGKRVVVVDDSIVRGT-TSSKIVRLLKEAGAKEVHM 69 (158)
Q Consensus 34 v~gk~vliVDDvi~TG~-Tl~~~~~~L~~~Ga~~V~v 69 (158)
-+++.|++.+. +|. ....++..|++.|-..|++
T Consensus 114 ~~d~~IVvYC~---~G~~~S~~aa~~L~~~G~~~V~~ 147 (162)
T TIGR03865 114 DKDRPLVFYCL---ADCWMSWNAAKRALAYGYSNVYW 147 (162)
T ss_pred CCCCEEEEEEC---CCCHHHHHHHHHHHhcCCcceEE
Confidence 37889999976 464 4556888899999998885
No 140
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=24.64 E-value=1.7e+02 Score=20.49 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=23.7
Q ss_pred ccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEE
Q 045545 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69 (158)
Q Consensus 32 ~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v 69 (158)
.+++|| ++|+++-. ..+....+...+++||.-+.+
T Consensus 48 ~~v~Gk-IVlc~~~~--~~~~~~k~~~~~~~GA~gvI~ 82 (126)
T cd02120 48 SKVKGK-IVLCDRGG--NTSRVAKGDAVKAAGGAGMIL 82 (126)
T ss_pred hhcccc-EEEEeCCC--CccHHHHHHHHHHcCCcEEEE
Confidence 568998 55556542 124556677788899987775
No 141
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=23.96 E-value=1.4e+02 Score=23.07 Aligned_cols=36 Identities=31% Similarity=0.534 Sum_probs=24.8
Q ss_pred cCCCCEEEEEecc-ccccHHHHHHHHHHHHcCCcEEEEEe
Q 045545 33 VLEGKRVVVVDDS-IVRGTTSSKIVRLLKEAGAKEVHMRI 71 (158)
Q Consensus 33 ~v~gk~vliVDDv-i~TG~Tl~~~~~~L~~~Ga~~V~v~v 71 (158)
.++||+++|+-|- ---|-.+.++ ++..|+..++-.+
T Consensus 3 ~l~gKkviiiGdRDGiPgpAie~c---~k~~gaevvfs~T 39 (154)
T PRK13265 3 LLEGKKVIIIGDRDGIPGPAIEEC---VKTTGAEVVFSST 39 (154)
T ss_pred cccCcEEEEEecCCCCCcHHHHHH---HhccCceEEEEee
Confidence 4689999999986 2345555544 4558999888543
No 142
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=23.90 E-value=1.1e+02 Score=21.12 Aligned_cols=32 Identities=53% Similarity=0.740 Sum_probs=23.1
Q ss_pred cCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEE
Q 045545 33 VLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69 (158)
Q Consensus 33 ~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v 69 (158)
+++||+|++|= .|.....-++.|.+.||+ |.+
T Consensus 4 ~l~~~~vlVvG----gG~va~~k~~~Ll~~gA~-v~v 35 (103)
T PF13241_consen 4 DLKGKRVLVVG----GGPVAARKARLLLEAGAK-VTV 35 (103)
T ss_dssp --TT-EEEEEE----ESHHHHHHHHHHCCCTBE-EEE
T ss_pred EcCCCEEEEEC----CCHHHHHHHHHHHhCCCE-EEE
Confidence 57899999875 488888888999999965 444
No 143
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=23.68 E-value=1.6e+02 Score=20.64 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=25.5
Q ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEE
Q 045545 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69 (158)
Q Consensus 35 ~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v 69 (158)
+++.++++. .+|.....++..|++.|-..++.
T Consensus 63 ~~~~ivv~C---~~G~rs~~aa~~L~~~G~~~v~~ 94 (117)
T cd01522 63 KDRPVLLLC---RSGNRSIAAAEAAAQAGFTNVYN 94 (117)
T ss_pred CCCeEEEEc---CCCccHHHHHHHHHHCCCCeEEE
Confidence 577788875 56777888899999999887774
No 144
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=23.24 E-value=1.9e+02 Score=22.18 Aligned_cols=39 Identities=21% Similarity=0.163 Sum_probs=26.3
Q ss_pred ccCCCCEEEEEecc--------cccc------HHHHHHHHHHHHcCCcEEEEE
Q 045545 32 GVLEGKRVVVVDDS--------IVRG------TTSSKIVRLLKEAGAKEVHMR 70 (158)
Q Consensus 32 ~~v~gk~vliVDDv--------i~TG------~Tl~~~~~~L~~~Ga~~V~v~ 70 (158)
-+++||-||+.... ...| .+...-++..+++||.-|.++
T Consensus 44 iDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~ 96 (151)
T cd04822 44 LDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVV 96 (151)
T ss_pred CCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEE
Confidence 47999977666552 1111 356666778889999987764
No 145
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=22.99 E-value=2e+02 Score=19.66 Aligned_cols=31 Identities=26% Similarity=0.126 Sum_probs=22.9
Q ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCcE-EE
Q 045545 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKE-VH 68 (158)
Q Consensus 35 ~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~-V~ 68 (158)
+++.++++ ..+|.....++..|+..|-.. ++
T Consensus 65 ~~~~ivv~---C~~G~rs~~a~~~L~~~G~~~~v~ 96 (109)
T cd01533 65 PRTPIVVN---CAGRTRSIIGAQSLINAGLPNPVA 96 (109)
T ss_pred CCCeEEEE---CCCCchHHHHHHHHHHCCCCccee
Confidence 46678888 456776677888999999865 55
No 146
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=22.74 E-value=2.2e+02 Score=24.35 Aligned_cols=43 Identities=19% Similarity=0.236 Sum_probs=30.3
Q ss_pred ccccCCCCEEEEEeccccc-cH---HHHHHHHHHHHcCCcEEEEEee
Q 045545 30 VTGVLEGKRVVVVDDSIVR-GT---TSSKIVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 30 ~~~~v~gk~vliVDDvi~T-G~---Tl~~~~~~L~~~Ga~~V~v~v~ 72 (158)
+..+++|++|+||-..-.. -. -+..++..|+.+||++|.+++.
T Consensus 47 i~~~v~g~~V~iiqs~~~p~nd~lmeLl~~~~alr~~~a~~i~~ViP 93 (319)
T PRK04923 47 IEESVRRQEVFVIQPTCAPSAENLMELLVLIDALKRASAASVTAVIP 93 (319)
T ss_pred ECCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 4577899999999764322 12 2344678899999999987543
No 147
>PF14502 HTH_41: Helix-turn-helix domain
Probab=22.70 E-value=99 Score=19.39 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=18.3
Q ss_pred cccHHHHHHHHHHHHcCCcEEE
Q 045545 47 VRGTTSSKIVRLLKEAGAKEVH 68 (158)
Q Consensus 47 ~TG~Tl~~~~~~L~~~Ga~~V~ 68 (158)
.+-+|+..|.+.|++.||-.+.
T Consensus 18 vs~GtiQ~Alk~Le~~gaI~Le 39 (48)
T PF14502_consen 18 VSRGTIQNALKFLEENGAIKLE 39 (48)
T ss_pred cchhHHHHHHHHHHHCCcEEee
Confidence 3567999999999999997654
No 148
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=22.46 E-value=1.9e+02 Score=20.54 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=24.7
Q ss_pred CCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEE
Q 045545 34 LEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69 (158)
Q Consensus 34 v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v 69 (158)
-+++.+++.++ .+|.....++..|+..|-. ++.
T Consensus 84 ~~~~~vvvyC~--~~G~rs~~a~~~L~~~G~~-v~~ 116 (128)
T cd01520 84 ERDPKLLIYCA--RGGMRSQSLAWLLESLGID-VPL 116 (128)
T ss_pred CCCCeEEEEeC--CCCccHHHHHHHHHHcCCc-eeE
Confidence 36788999997 4466666777889999984 553
No 149
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=22.18 E-value=1.7e+02 Score=27.09 Aligned_cols=35 Identities=31% Similarity=0.346 Sum_probs=29.1
Q ss_pred CCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEee
Q 045545 34 LEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIA 72 (158)
Q Consensus 34 v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~v~ 72 (158)
..||+|+||- .|.+...++..+...|+++|.++..
T Consensus 466 ~~gk~VvVIG----gG~~a~d~A~~a~r~ga~~Vt~i~~ 500 (654)
T PRK12769 466 TAGLNVVVLG----GGDTAMDCVRTALRHGASNVTCAYR 500 (654)
T ss_pred CCCCeEEEEC----CcHHHHHHHHHHHHcCCCeEEEeEe
Confidence 5789999985 8888888999889999998886543
No 150
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=22.04 E-value=3.1e+02 Score=24.96 Aligned_cols=39 Identities=26% Similarity=0.357 Sum_probs=32.9
Q ss_pred ccCCCCEEEE--------Eecc-----ccccHHHHHHHHHHHHcCCcEEEEE
Q 045545 32 GVLEGKRVVV--------VDDS-----IVRGTTSSKIVRLLKEAGAKEVHMR 70 (158)
Q Consensus 32 ~~v~gk~vli--------VDDv-----i~TG~Tl~~~~~~L~~~Ga~~V~v~ 70 (158)
.+++||+||| ||+| -+||..=.+.++.+...||+...+.
T Consensus 252 ~~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~ 303 (475)
T PRK13982 252 KPLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLIS 303 (475)
T ss_pred cccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEe
Confidence 3689999998 7888 6788888999999999999876653
No 151
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=21.92 E-value=2.6e+02 Score=20.05 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=19.5
Q ss_pred CEEEEEeccccccHHHHHHHHHHHHcCCcEEEE
Q 045545 37 KRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69 (158)
Q Consensus 37 k~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v 69 (158)
+.|+|-=|--++-+++..+.+.++++|..++.+
T Consensus 94 ~~v~i~aD~~~~~~~vv~vmd~~~~~G~~~v~l 126 (129)
T TIGR02801 94 TPVLIRADKTVPYGEVIKVMALLKQAGIEKVGL 126 (129)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 345555555555556666666666666666554
No 152
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=21.74 E-value=2e+02 Score=19.84 Aligned_cols=34 Identities=35% Similarity=0.486 Sum_probs=22.1
Q ss_pred ccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEE
Q 045545 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69 (158)
Q Consensus 32 ~~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v 69 (158)
.+++|| ++|++. .+-+...-++..+++||.-+.+
T Consensus 43 ~~~~Gk-Ivl~~~---g~~~~~~k~~~a~~~GA~gvii 76 (126)
T cd00538 43 ADVKGK-IVLVRR---GGCSFSEKVKNAQKAGAKAVII 76 (126)
T ss_pred CCccce-EEEEEC---CCcCHHHHHHHHHHCCCEEEEE
Confidence 458887 555553 2235555666778899987765
No 153
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=21.68 E-value=2.4e+02 Score=18.64 Aligned_cols=36 Identities=25% Similarity=0.235 Sum_probs=21.3
Q ss_pred CCCCEEEEEeccccccHHHHHH--HHHHHHcCCcEEEE
Q 045545 34 LEGKRVVVVDDSIVRGTTSSKI--VRLLKEAGAKEVHM 69 (158)
Q Consensus 34 v~gk~vliVDDvi~TG~Tl~~~--~~~L~~~Ga~~V~v 69 (158)
-+++.|++.+..-..+.....+ ...|++.|...|++
T Consensus 65 ~~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~ 102 (113)
T PF00581_consen 65 DKDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYI 102 (113)
T ss_dssp TTTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEE
T ss_pred cccccceeeeecccccchhHHHHHHHHHHHcCCCCEEE
Confidence 4667888888333333333332 22277889887775
No 154
>PRK11024 colicin uptake protein TolR; Provisional
Probab=21.33 E-value=2.7e+02 Score=20.53 Aligned_cols=32 Identities=25% Similarity=0.223 Sum_probs=18.7
Q ss_pred EEEEEeccccccHHHHHHHHHHHHcCCcEEEE
Q 045545 38 RVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69 (158)
Q Consensus 38 ~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v 69 (158)
.|+|-=|--++-+++..+.+.++++|..++.+
T Consensus 105 ~V~i~aD~~~~~~~vv~vmd~~k~aG~~~v~l 136 (141)
T PRK11024 105 VFLIGGAKDVPYDEIIKALNLLHSAGVKSVGL 136 (141)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 45554555555556666666666666666654
No 155
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=21.30 E-value=1.2e+02 Score=22.29 Aligned_cols=39 Identities=26% Similarity=0.435 Sum_probs=25.7
Q ss_pred cccCCCCEEEEEecccc---ccHHHHHH-------HHHHHHcCCcEEEEE
Q 045545 31 TGVLEGKRVVVVDDSIV---RGTTSSKI-------VRLLKEAGAKEVHMR 70 (158)
Q Consensus 31 ~~~v~gk~vliVDDvi~---TG~Tl~~~-------~~~L~~~Ga~~V~v~ 70 (158)
.++++|| +++|++-.. ||.++-.. .+.+.++||.-+.+.
T Consensus 35 ~~~v~GK-Ivlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~ 83 (134)
T cd04815 35 AGAVKGK-IVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIR 83 (134)
T ss_pred hhhcCCe-EEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEE
Confidence 4689998 555566544 33344333 688889999877764
No 156
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=21.05 E-value=2.6e+02 Score=21.48 Aligned_cols=34 Identities=38% Similarity=0.413 Sum_probs=25.7
Q ss_pred cccCCCCEEEEEeccccccHHHHH-HHHHHHHcCCcEEEE
Q 045545 31 TGVLEGKRVVVVDDSIVRGTTSSK-IVRLLKEAGAKEVHM 69 (158)
Q Consensus 31 ~~~v~gk~vliVDDvi~TG~Tl~~-~~~~L~~~Ga~~V~v 69 (158)
..+++||+|+|| -.|.+.-. +++.|.+.|++ |.+
T Consensus 39 ~~~l~gk~vlVi----G~G~~~G~~~a~~L~~~g~~-V~v 73 (168)
T cd01080 39 GIDLAGKKVVVV----GRSNIVGKPLAALLLNRNAT-VTV 73 (168)
T ss_pred CCCCCCCEEEEE----CCcHHHHHHHHHHHhhCCCE-EEE
Confidence 367999999987 45766555 88999999984 554
No 157
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=20.85 E-value=2.1e+02 Score=23.82 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=28.7
Q ss_pred cCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEE
Q 045545 33 VLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMR 70 (158)
Q Consensus 33 ~v~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~ 70 (158)
++++|+|+| +-.|++-..++..|.+.|+.+|.++
T Consensus 124 ~~~~k~vlI----lGaGGaaraia~aL~~~G~~~I~I~ 157 (284)
T PRK12549 124 DASLERVVQ----LGAGGAGAAVAHALLTLGVERLTIF 157 (284)
T ss_pred CccCCEEEE----ECCcHHHHHHHHHHHHcCCCEEEEE
Confidence 467888885 4799999999999999999988863
No 158
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=20.80 E-value=2.3e+02 Score=21.82 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=25.4
Q ss_pred ccCCCCEEEEEeccc---------ccc------HHHHHHHHHHHHcCCcEEEEE
Q 045545 32 GVLEGKRVVVVDDSI---------VRG------TTSSKIVRLLKEAGAKEVHMR 70 (158)
Q Consensus 32 ~~v~gk~vliVDDvi---------~TG------~Tl~~~~~~L~~~Ga~~V~v~ 70 (158)
-|++||-|++..+-- ..| ++...=.+.++++||.-+.++
T Consensus 46 ~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v 99 (157)
T cd04821 46 LDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIV 99 (157)
T ss_pred CCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEE
Confidence 489999887773321 112 234446677889999977654
No 159
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=20.57 E-value=2.8e+02 Score=20.46 Aligned_cols=35 Identities=20% Similarity=0.232 Sum_probs=23.5
Q ss_pred CCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEE
Q 045545 36 GKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMR 70 (158)
Q Consensus 36 gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v~ 70 (158)
+..|+|-=|--..-+.+..+.+.++++|..+|.++
T Consensus 99 ~~~V~I~aD~~~~~~~vv~vmd~l~~aG~~~v~l~ 133 (141)
T PRK11267 99 DTTIFFRADKTVDYETLMKVMDTLHQAGYLKIGLV 133 (141)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 44566666666666677777777777777776654
No 160
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=20.57 E-value=2e+02 Score=19.96 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=24.9
Q ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEE
Q 045545 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69 (158)
Q Consensus 35 ~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v 69 (158)
+++.|++.+..- |.....++..|+..|-+.+++
T Consensus 78 ~~~~vv~~c~~g--~~~a~~~~~~l~~~G~~~v~~ 110 (122)
T cd01448 78 NDDTVVVYDDGG--GFFAARAWWTLRYFGHENVRV 110 (122)
T ss_pred CCCEEEEECCCC--CccHHHHHHHHHHcCCCCEEE
Confidence 577888886543 566777788899999887774
No 161
>PLN02160 thiosulfate sulfurtransferase
Probab=20.46 E-value=1.9e+02 Score=21.14 Aligned_cols=32 Identities=28% Similarity=0.254 Sum_probs=25.6
Q ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEE
Q 045545 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69 (158)
Q Consensus 35 ~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v 69 (158)
+++++++. +.+|.....+++.|++.|...|+.
T Consensus 80 ~~~~Iivy---C~sG~RS~~Aa~~L~~~G~~~v~~ 111 (136)
T PLN02160 80 PADDILVG---CQSGARSLKATTELVAAGYKKVRN 111 (136)
T ss_pred CCCcEEEE---CCCcHHHHHHHHHHHHcCCCCeee
Confidence 46677776 468999999999999999887764
No 162
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=20.44 E-value=1.1e+02 Score=26.63 Aligned_cols=40 Identities=30% Similarity=0.380 Sum_probs=32.2
Q ss_pred ccccHHHHHHHHHHHHcCCcEEEEEeecCCce---ecceeeec
Q 045545 46 IVRGTTSSKIVRLLKEAGAKEVHMRIASPPII---ASCYYGVD 85 (158)
Q Consensus 46 i~TG~Tl~~~~~~L~~~Ga~~V~v~v~~~~~~---~~~~~gi~ 85 (158)
.-||+|+.-..+.|++.....|.++.+-||.. .-..||+.
T Consensus 221 ~GTGGTiaGVskyLkek~~~~v~~~laDPpGSGlYnkV~~GVm 263 (391)
T KOG1481|consen 221 TGTGGTIAGVSKYLKEKSDGRVAVFLADPPGSGLYNKVNYGVM 263 (391)
T ss_pred cCCCcchHHHHHHHhhcCCCceEEEEeCCCCCchhhhhhhhhh
Confidence 56999999999999999888899988888753 44556644
No 163
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=20.37 E-value=1.8e+02 Score=21.95 Aligned_cols=32 Identities=22% Similarity=0.431 Sum_probs=27.2
Q ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEE
Q 045545 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69 (158)
Q Consensus 35 ~gk~vliVDDvi~TG~Tl~~~~~~L~~~Ga~~V~v 69 (158)
+|+++.+|=| ..+.+....+..+...|.. +.+
T Consensus 1 ~gl~i~~vGD--~~~rv~~Sl~~~~~~~g~~-~~~ 32 (158)
T PF00185_consen 1 KGLKIAYVGD--GHNRVAHSLIELLAKFGME-VVL 32 (158)
T ss_dssp TTEEEEEESS--TTSHHHHHHHHHHHHTTSE-EEE
T ss_pred CCCEEEEECC--CCChHHHHHHHHHHHcCCE-EEE
Confidence 5788999998 6789999999999999988 554
Done!