RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 045545
(158 letters)
>gnl|CDD|215241 PLN02440, PLN02440, amidophosphoribosyltransferase.
Length = 479
Score = 275 bits (704), Expect = 5e-92
Identities = 122/154 (79%), Positives = 131/154 (85%), Gaps = 5/154 (3%)
Query: 5 RYEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGA 64
Y TFIEPSQKIRDF VKLKL+PV VLEGKRVVVVDDSIVRGTTSSKIVR+L+EAGA
Sbjct: 309 HYVGRTFIEPSQKIRDFSVKLKLNPVRSVLEGKRVVVVDDSIVRGTTSSKIVRMLREAGA 368
Query: 65 KEVHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFIGCDSLAFLLIDSLNKMLG 124
KEVHMRIASPPIIASCYYGVDTPS EELISNRMSVEEIR+FIGCDSLAFL ++ L K LG
Sbjct: 369 KEVHMRIASPPIIASCYYGVDTPSREELISNRMSVEEIRKFIGCDSLAFLPLEDLKKSLG 428
Query: 125 DDSQNFCYACFSGKYPVKPEEMKVKRVGEFVDDG 158
++S FCYACFSG YPV P KRVG +DDG
Sbjct: 429 EESPRFCYACFSGDYPVLP-----KRVGGDIDDG 457
>gnl|CDD|223112 COG0034, PurF, Glutamine phosphoribosylpyrophosphate
amidotransferase [Nucleotide transport and metabolism].
Length = 470
Score = 232 bits (595), Expect = 8e-76
Identities = 88/155 (56%), Positives = 116/155 (74%), Gaps = 2/155 (1%)
Query: 4 TRYEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAG 63
RY TFI P+Q++R+ GV+LKL+PV V++GKRVV+VDDSIVRGTTS +IV++L+EAG
Sbjct: 316 NRYVGRTFIMPTQELREKGVRLKLNPVREVVKGKRVVLVDDSIVRGTTSRRIVQMLREAG 375
Query: 64 AKEVHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFIGCDSLAFLLIDSLNKML 123
AKEVH+RIASPPI C+YG+D P+ EELI+ +VEEIR+ IG DSLA+L ++ L K +
Sbjct: 376 AKEVHVRIASPPIRYPCFYGIDMPTREELIAANRTVEEIRKAIGADSLAYLSLEGLIKAI 435
Query: 124 GDDSQNFCYACFSGKYPVK--PEEMKVKRVGEFVD 156
G D+ +FC ACF+G+YP EE K E D
Sbjct: 436 GRDNNDFCLACFTGEYPTGLPDEEYLDKLELERND 470
>gnl|CDD|236384 PRK09123, PRK09123, amidophosphoribosyltransferase; Provisional.
Length = 479
Score = 228 bits (584), Expect = 5e-74
Identities = 79/142 (55%), Positives = 107/142 (75%), Gaps = 5/142 (3%)
Query: 10 TFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69
TFI+P+Q+IR+ GVKLK + V+EGKRVV+VDDSIVRGTTS KIV++L++AGAKEVH+
Sbjct: 334 TFIQPTQQIRNLGVKLKHNANRAVIEGKRVVLVDDSIVRGTTSRKIVQMLRDAGAKEVHL 393
Query: 70 RIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFIGCDSLAFLLIDSLNKMLGDDSQN 129
RIASPPI C+YG+DTP +L++ S+EE+ E+IG DSLAFL ID L + +G++ +N
Sbjct: 394 RIASPPITHPCFYGIDTPERSKLLAATHSLEEMAEYIGADSLAFLSIDGLYRAVGEEGRN 453
Query: 130 -----FCYACFSGKYPVKPEEM 146
+C ACF+G YP +
Sbjct: 454 PAAPQYCDACFTGDYPTGLTDQ 475
>gnl|CDD|233285 TIGR01134, purF, amidophosphoribosyltransferase. Alternate name:
glutamine phosphoribosylpyrophosphate (PRPP)
amidotransferase [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 442
Score = 221 bits (566), Expect = 8e-72
Identities = 78/136 (57%), Positives = 105/136 (77%)
Query: 5 RYEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGA 64
RY TFI P+Q++R+ V+LKL+P+ V GKRVV+VDDSIVRGTTS +IV++L++AGA
Sbjct: 307 RYVGRTFIMPTQELRELSVRLKLNPIREVFRGKRVVLVDDSIVRGTTSRQIVKMLRDAGA 366
Query: 65 KEVHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFIGCDSLAFLLIDSLNKMLG 124
KEVH+RIASPPI CYYG+D P+ EELI+ +VEEIR+ IG DSLA+L ++ L + +G
Sbjct: 367 KEVHVRIASPPIRYPCYYGIDMPTREELIAAGRTVEEIRKEIGADSLAYLSLEGLKEAIG 426
Query: 125 DDSQNFCYACFSGKYP 140
+ C ACF+G+YP
Sbjct: 427 KKISDLCLACFTGEYP 442
>gnl|CDD|181456 PRK08525, PRK08525, amidophosphoribosyltransferase; Provisional.
Length = 445
Score = 217 bits (554), Expect = 7e-70
Identities = 82/137 (59%), Positives = 106/137 (77%), Gaps = 1/137 (0%)
Query: 6 YEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAK 65
Y TFIEP+Q++R+ VKLKL+P++ VLEGKR+VV+DDSIVRGTTS KIV LL+ AGAK
Sbjct: 310 YVGRTFIEPTQEMRNLKVKLKLNPMSKVLEGKRIVVIDDSIVRGTTSKKIVSLLRAAGAK 369
Query: 66 EVHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFIGCDSLAFLLIDSLNKMLGD 125
E+H+RIA P I CYYG+DTP+ EELIS SVEE+R++IG DSL+FL ID L + +GD
Sbjct: 370 EIHLRIACPEIKFPCYYGIDTPTFEELISANKSVEEVRKYIGADSLSFLSIDELTRSIGD 429
Query: 126 DSQNFCYACFSGKYPVK 142
+ + + A F G Y +K
Sbjct: 430 E-RKYSLASFDGDYFIK 445
>gnl|CDD|235998 PRK07349, PRK07349, amidophosphoribosyltransferase; Provisional.
Length = 500
Score = 201 bits (514), Expect = 2e-63
Identities = 77/144 (53%), Positives = 110/144 (76%), Gaps = 1/144 (0%)
Query: 5 RYEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGA 64
RY TFI+P+Q +R+ G+++KL+P+ VL GKR+++VDDSIVRGTTS KIV+ L++AGA
Sbjct: 346 RYVGRTFIQPTQSMRESGIRMKLNPLKDVLAGKRIIIVDDSIVRGTTSRKIVKALRDAGA 405
Query: 65 KEVHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFIGCDSLAFLLIDSLNKMLG 124
EVHMRI+SPP+ C+YG+DT + ++LI+ SVEEI E IG DSLA+L + + + G
Sbjct: 406 TEVHMRISSPPVTHPCFYGIDTDTQDQLIAATKSVEEIAEQIGVDSLAYLSWEGMLEATG 465
Query: 125 DDSQNFCYACFSGKYPVK-PEEMK 147
+D +FC ACF+G YP+ PE++K
Sbjct: 466 EDPNSFCSACFTGDYPIPIPEQVK 489
>gnl|CDD|235611 PRK05793, PRK05793, amidophosphoribosyltransferase; Provisional.
Length = 469
Score = 200 bits (511), Expect = 3e-63
Identities = 77/137 (56%), Positives = 102/137 (74%), Gaps = 1/137 (0%)
Query: 5 RYEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGA 64
+Y TFI PSQ++R+ V++KL+P+ +EGKRVV++DDSIVRGTTS ++V LL++AGA
Sbjct: 322 KYVGRTFIAPSQELRERAVRVKLNPLKVNVEGKRVVLIDDSIVRGTTSKRLVELLRKAGA 381
Query: 65 KEVHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFIGCDSLAFLLIDSLNKMLG 124
KEVH R++SPP+ CY+G+DTP +ELI MSVEEIRE IG DSL +L I+ L + L
Sbjct: 382 KEVHFRVSSPPVKYPCYFGIDTPYRKELIGANMSVEEIREMIGADSLGYLSIEGLLESLN 441
Query: 125 DDSQNFCYACFSGKYPV 141
D FC CF+G YPV
Sbjct: 442 GDK-GFCLGCFNGVYPV 457
>gnl|CDD|181061 PRK07631, PRK07631, amidophosphoribosyltransferase; Provisional.
Length = 475
Score = 195 bits (498), Expect = 3e-61
Identities = 86/142 (60%), Positives = 110/142 (77%), Gaps = 4/142 (2%)
Query: 5 RYEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGA 64
RY TFI+PSQ +R+ GVK+KLSPV GV+EGKRVV+VDDSIVRGTTS +IV +L+EAGA
Sbjct: 317 RYVGRTFIQPSQALREQGVKMKLSPVRGVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGA 376
Query: 65 KEVHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFIGCDSLAFLLIDSLNKMLG 124
EVH+RI+SPPI C+YG+DT + EELI++ SVEEIR+ IG DSLAFL + L + +G
Sbjct: 377 TEVHVRISSPPITHPCFYGIDTSTKEELIASNHSVEEIRQLIGADSLAFLSQEGLLEGIG 436
Query: 125 --DDSQNF--CYACFSGKYPVK 142
+S N C ACF+G+YP +
Sbjct: 437 RPYESPNCGQCLACFTGQYPTE 458
>gnl|CDD|235984 PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional.
Length = 484
Score = 190 bits (484), Expect = 4e-59
Identities = 78/139 (56%), Positives = 102/139 (73%), Gaps = 4/139 (2%)
Query: 6 YEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAK 65
Y TFI+P+Q++R+ GV++KLS V+GV++GKRVV+VDDSIVRGTTS +IV+LLKEAGAK
Sbjct: 320 YVARTFIQPTQELREQGVRMKLSAVSGVVKGKRVVMVDDSIVRGTTSRRIVQLLKEAGAK 379
Query: 66 EVHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFIGCDSLAFLLIDSLNKMLG- 124
EVH+ IASP + C+YG+D + ELIS SVEEI + IG DSL +L +D L + +G
Sbjct: 380 EVHVAIASPELKYPCFYGIDIQTRRELISANHSVEEICDIIGADSLTYLSVDGLIESIGL 439
Query: 125 -DDSQN--FCYACFSGKYP 140
D+ N C A F G YP
Sbjct: 440 DTDAPNGGLCVAYFDGDYP 458
>gnl|CDD|236113 PRK07847, PRK07847, amidophosphoribosyltransferase; Provisional.
Length = 510
Score = 185 bits (473), Expect = 3e-57
Identities = 72/137 (52%), Positives = 98/137 (71%), Gaps = 1/137 (0%)
Query: 10 TFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69
TFI+PSQ IR G++LKL+P+ V+ GKR+VVVDDSIVRG T +VR+L+EAGA EVH+
Sbjct: 341 TFIQPSQTIRQLGIRLKLNPLREVIRGKRLVVVDDSIVRGNTQRALVRMLREAGAAEVHV 400
Query: 70 RIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFIGCDSLAFLLIDSLNKMLGDDSQN 129
RI+SPP+ C+YG+D S ELI+N ++VEEIR IG DSL ++ +D + +
Sbjct: 401 RISSPPVKWPCFYGIDFASRAELIANGLTVEEIRRSIGADSLGYISLDGMIAATEQPASR 460
Query: 130 FCYACFSGKYPVK-PEE 145
C ACF G YP++ P+E
Sbjct: 461 LCTACFDGVYPIELPDE 477
>gnl|CDD|136048 PRK06781, PRK06781, amidophosphoribosyltransferase; Provisional.
Length = 471
Score = 167 bits (423), Expect = 2e-50
Identities = 79/140 (56%), Positives = 103/140 (73%), Gaps = 4/140 (2%)
Query: 5 RYEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGA 64
RY TFI+PSQ++R+ GVK+KLS V GV+EGKRVV++DDSIVRGTTS +IVR+L+EAGA
Sbjct: 317 RYVGRTFIQPSQELREQGVKMKLSAVRGVVEGKRVVMIDDSIVRGTTSKRIVRMLREAGA 376
Query: 65 KEVHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFIGCDSLAFL----LIDSLN 120
EVH+RIASPP+ C+YG+D + +ELI+ +VEEIRE IG DSL FL L+D++
Sbjct: 377 TEVHVRIASPPLKYPCFYGIDIQTRKELIAANHTVEEIREMIGADSLTFLSEDGLVDAIG 436
Query: 121 KMLGDDSQNFCYACFSGKYP 140
+ C A F+G YP
Sbjct: 437 RPYEGKYGGLCMAYFNGDYP 456
>gnl|CDD|181395 PRK08341, PRK08341, amidophosphoribosyltransferase; Provisional.
Length = 442
Score = 165 bits (419), Expect = 6e-50
Identities = 76/136 (55%), Positives = 100/136 (73%), Gaps = 4/136 (2%)
Query: 5 RYEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGA 64
RY TFI PS R+ VKLKLSPV V+ GKRVV+VDDSIVRGTT +IV++L++AGA
Sbjct: 305 RYIGRTFIMPSG--RELKVKLKLSPVREVINGKRVVLVDDSIVRGTTMKRIVKMLRDAGA 362
Query: 65 KEVHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFIGCDSLAFLLIDSLNKMLG 124
+EVH+RIASPPI CY G+D P+ ELI+ SVE+IR+ IG DSLA+L ++ L + +G
Sbjct: 363 REVHVRIASPPIRYPCYMGIDIPTRHELIAAWGSVEDIRKEIGADSLAYLSVEGLKRAVG 422
Query: 125 DDSQNFCYACFSGKYP 140
+ + C AC +G+YP
Sbjct: 423 TE--DLCMACLTGEYP 436
>gnl|CDD|102351 PRK06388, PRK06388, amidophosphoribosyltransferase; Provisional.
Length = 474
Score = 156 bits (395), Expect = 3e-46
Identities = 69/137 (50%), Positives = 92/137 (67%)
Query: 5 RYEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGA 64
RY TFI P+Q R +KLKL+P+ V+ GKR+V+VDDSIVRG T IV+++++ GA
Sbjct: 325 RYSERTFIMPTQSDRKAAIKLKLNPIREVISGKRIVLVDDSIVRGNTMRFIVKIMRKYGA 384
Query: 65 KEVHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFIGCDSLAFLLIDSLNKMLG 124
KEVH+RI SP IIA CY+GVD + ++ I+ + EEI IG DSLAFL ID L + +G
Sbjct: 385 KEVHVRIGSPHIIAPCYFGVDMKTKDQFIARGKTDEEINNEIGADSLAFLSIDGLKQAIG 444
Query: 125 DDSQNFCYACFSGKYPV 141
N C C +G YP+
Sbjct: 445 IKENNLCLGCLTGIYPI 461
>gnl|CDD|236427 PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional.
Length = 501
Score = 136 bits (344), Expect = 2e-38
Identities = 58/138 (42%), Positives = 89/138 (64%), Gaps = 3/138 (2%)
Query: 5 RYEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGA 64
RY TFI P Q R V+ KL+ + +GK V++VDDSIVRGTTS +IV++ +EAGA
Sbjct: 327 RYVGRTFIMPGQAQRKKSVRQKLNAIRAEFKGKNVLLVDDSIVRGTTSEQIVQMAREAGA 386
Query: 65 KEVHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFIGCDSLAFLLIDSLNKMLG 124
K+V+ A+PP+ YG+D P++ ELI++ +VEEIR+ IG D L + ++ L + +
Sbjct: 387 KKVYFASAAPPVRFPNVYGIDMPTANELIAHGRTVEEIRQIIGADGLIYQDLEDLIEAVR 446
Query: 125 DDS---QNFCYACFSGKY 139
+ + + F +CF G+Y
Sbjct: 447 EGNPDIKQFECSCFDGEY 464
>gnl|CDD|206754 cd06223, PRTases_typeI, Phosphoribosyl transferase (PRT)-type I
domain. Phosphoribosyl transferase (PRT) domain. The
type I PRTases are identified by a conserved PRPP
binding motif which features two adjacent acidic
residues surrounded by one or more hydrophobic residue.
PRTases catalyze the displacement of the
alpha-1'-pyrophosphate of
5-phosphoribosyl-alpha1-pyrpphosphate (PRPP) by a
nitrogen-containing nucleophile. The reaction products
are an alpha-1 substituted ribose-5'-phosphate and a
free pyrophosphate (PP). PRPP, an activated form of
ribose-5-phosphate, is a key metabolite connecting
nucleotide synthesis and salvage pathways. The type I
PRTase family includes a range of diverse phosphoribosyl
transferase enzymes and regulatory proteins of the
nucleotide synthesis and salvage pathways, including
adenine phosphoribosyltransferase EC:2.4.2.7.,
hypoxanthine-guanine-xanthine phosphoribosyltransferase,
hypoxanthine phosphoribosyltransferase EC:2.4.2.8.,
ribose-phosphate pyrophosphokinase EC:2.7.6.1.,
amidophosphoribosyltransferase EC:2.4.2.14., orotate
phosphoribosyltransferase EC:2.4.2.10., uracil
phosphoribosyltransferase EC:2.4.2.9., and
xanthine-guanine phosphoribosyltransferase EC:2.4.2.22.
Length = 130
Score = 57.0 bits (138), Expect = 4e-11
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 26 KLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIA 72
P+ G ++GKRV++VDD I G T + LLKEAGAK V + +
Sbjct: 61 LELPLGGDVKGKRVLLVDDVIATGGTLLAAIELLKEAGAKVVGVAVL 107
>gnl|CDD|215757 pfam00156, Pribosyltran, Phosphoribosyl transferase domain. This
family includes a range of diverse phosphoribosyl
transferase enzymes. This family includes: Adenine
phosphoribosyltransferase EC:2.4.2.7.
Hypoxanthine-guanine-xanthine phosphoribosyltransferase.
Hypoxanthine phosphoribosyltransferase EC:2.4.2.8.
Ribose-phosphate pyrophosphokinase i EC:2.7.6.1.
Amidophosphoribosyltransferase EC:2.4.2.14. Orotate
phosphoribosyltransferase EC:2.4.2.10. Uracil
phosphoribosyltransferase EC:2.4.2.9. Xanthine-guanine
phosphoribosyltransferase EC:2.4.2.22. In Arabidopsis,
At the very N-terminus of this domain is the P-Loop
NTPase domain.
Length = 123
Score = 52.0 bits (125), Expect = 2e-09
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 14 PSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRI 71
S K R LS + +L+GKRV++VDD + G T V LLK+AGAK V + +
Sbjct: 64 SSIKSRGGESVTLLSRLPELLKGKRVLIVDDVLDTGGTLRAAVELLKKAGAKVVGVAV 121
>gnl|CDD|223538 COG0462, PrsA, Phosphoribosylpyrophosphate synthetase [Nucleotide
transport and metabolism / Amino acid transport and
metabolism].
Length = 314
Score = 51.0 bits (123), Expect = 3e-08
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 13/84 (15%)
Query: 29 PVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPS 88
+ G +EGK VV+VDD I G T +K + LKE GAK+V A+ +GV + +
Sbjct: 207 NLIGDVEGKDVVIVDDIIDTGGTIAKAAKALKERGAKKV---------YAAATHGVFSGA 257
Query: 89 SEELISNRMSVEEIREFIGCDSLA 112
+ E + I E I D++
Sbjct: 258 ALERLEASA----IDEVIVTDTIP 277
>gnl|CDD|130318 TIGR01251, ribP_PPkin, ribose-phosphate pyrophosphokinase.
Alternate name: phosphoribosylpyrophosphate synthetase
In some systems, close homologs lacking enzymatic
activity exist and perform regulatory functions. The
model is designated subfamily rather than equivalog for
this reason [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 308
Score = 50.4 bits (121), Expect = 4e-08
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 13/83 (15%)
Query: 29 PVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPS 88
+ G +EGK VV+VDD I G T +K +LK AGAK V IA+ +GV +
Sbjct: 203 NLVGDVEGKDVVIVDDIIDTGGTIAKAAEILKSAGAKRV---------IAAATHGVFSGP 253
Query: 89 SEELISNRMSVEEIREFIGCDSL 111
+ E I+N VEE+ I +++
Sbjct: 254 AIERIAN-AGVEEV---IVTNTI 272
>gnl|CDD|179535 PRK03092, PRK03092, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 304
Score = 45.3 bits (108), Expect = 2e-06
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 15/83 (18%)
Query: 30 VTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGV-DTPS 88
V G +EG+ V+VDD I G T + VR LKEAGAK+V I + +GV P+
Sbjct: 195 VVGDVEGRTCVLVDDMIDTGGTIAGAVRALKEAGAKDV---------IIAATHGVLSGPA 245
Query: 89 SEELISNRMSVEEIREFIGCDSL 111
+E R+ RE + D+L
Sbjct: 246 AE-----RLKNCGAREVVVTDTL 263
>gnl|CDD|234868 PRK00934, PRK00934, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 285
Score = 43.7 bits (104), Expect = 9e-06
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 16 QKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPP 75
+K R +++++P ++GK V++VDD I G T + +++LKE GAK+V+
Sbjct: 184 EKTRISPTEVEIAPKNLDVKGKDVLIVDDIISTGGTMATAIKILKEQGAKKVY------- 236
Query: 76 IIASCYYGVDTPSSEELISNRMSVEEIREFIGCDSLA 112
+C + V + ++ + E I D+L
Sbjct: 237 --VACVHPVLVGDAI----LKLYNAGVDEIIVTDTLE 267
>gnl|CDD|215209 PLN02369, PLN02369, ribose-phosphate pyrophosphokinase.
Length = 302
Score = 42.8 bits (101), Expect = 2e-05
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM----RIASPPIIASCYYGVDTP 87
G ++GK ++VDD I T +K LL + GA+EV+ + SPP I G+
Sbjct: 198 GDVKGKVAIMVDDMIDTAGTITKGAALLHQEGAREVYACATHAVFSPPAIERLSSGLFQ- 256
Query: 88 SSEELISNRMSVEEIREF--IGCDSLAFLLIDSLNKMLGDDS 127
E +++N + V E F + S+A LL +++ ++ D S
Sbjct: 257 --EVIVTNTIPVSEKNYFPQLTVLSVANLLGETIWRVHDDCS 296
>gnl|CDD|223707 COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase
[Nucleotide transport and metabolism].
Length = 178
Score = 39.8 bits (94), Expect = 1e-04
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 26 KLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVH 68
L + ++G+ V++V+D I G T SK+ LLKE GAK V
Sbjct: 83 ILKDLDEDIKGRDVLIVEDIIDSGLTLSKVRDLLKERGAKSVR 125
>gnl|CDD|235023 PRK02277, PRK02277, orotate phosphoribosyltransferase-like protein;
Provisional.
Length = 200
Score = 39.9 bits (94), Expect = 1e-04
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEV 67
EGKR V+VDD I GTT + + LKE G K V
Sbjct: 139 EGKRCVIVDDVITSGTTMKETIEYLKEHGGKPV 171
>gnl|CDD|234771 PRK00455, pyrE, orotate phosphoribosyltransferase; Validated.
Length = 202
Score = 39.8 bits (94), Expect = 2e-04
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 33 VLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69
L GKRV+VV+D I G + + V ++ AGA+ V +
Sbjct: 110 RLFGKRVLVVEDVITTGGSVLEAVEAIRAAGAEVVGV 146
>gnl|CDD|235678 PRK06031, PRK06031, phosphoribosyltransferase; Provisional.
Length = 233
Score = 39.4 bits (92), Expect = 2e-04
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 20 DFGVKLKLSP-VTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIA 72
D G +L + P + +LEG+RV ++DD I G + +RLL G + + A
Sbjct: 137 DQGKRLYIDPRMLPLLEGRRVALIDDVISSGASIVAGLRLLAACGIEPAGIGAA 190
>gnl|CDD|181675 PRK09162, PRK09162, hypoxanthine-guanine phosphoribosyltransferase;
Provisional.
Length = 181
Score = 38.3 bits (90), Expect = 5e-04
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 24/95 (25%)
Query: 4 TRYEHETFIEPSQKIRDFGVKL--KLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKE 61
TRY +ET G +L K+ P L+G+ V+VVDD + G T + I E
Sbjct: 74 TRYRNETT----------GGELVWKVKPRES-LKGRTVLVVDDILDEGHTLAAIRDRCLE 122
Query: 62 AGAKEV---------HMRIASPPIIASCYYGVDTP 87
GA EV H R A P+ A + G++ P
Sbjct: 123 MGAAEVYSAVLVDKTHDRKA-KPLKAD-FVGLEVP 155
>gnl|CDD|223925 COG0856, COG0856, Orotate phosphoribosyltransferase homologs
[Nucleotide transport and metabolism].
Length = 203
Score = 38.2 bits (89), Expect = 5e-04
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 14 PSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEV 67
+K G +S +EGKR V+VDD I G+T + + LKE G K V
Sbjct: 119 KHRKDEGAGKGGSISSNFASVEGKRCVIVDDVITTGSTIKETIEQLKEEGGKPV 172
>gnl|CDD|223537 COG0461, PyrE, Orotate phosphoribosyltransferase [Nucleotide
transport and metabolism].
Length = 201
Score = 37.6 bits (88), Expect = 9e-04
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGA 64
G ++G++VVVV+D I G + + V L+EAGA
Sbjct: 108 GEVKGEKVVVVEDVITTGGSILEAVEALREAGA 140
>gnl|CDD|223970 COG1040, ComFC, Predicted amidophosphoribosyltransferases [General
function prediction only].
Length = 225
Score = 37.8 bits (88), Expect = 0.001
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEV 67
G+ E K V++VDD G T + +LL+EAGAK V
Sbjct: 180 GIEEPKNVLLVDDVYTTGATLKEAAKLLREAGAKRV 215
>gnl|CDD|235072 PRK02812, PRK02812, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 330
Score = 37.8 bits (88), Expect = 0.001
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 30 VTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM----RIASPPIIASCYYGVD 85
V G ++GK ++VDD I G T + RLL++ GAK+V+ + SPP I G+
Sbjct: 224 VIGDVKGKTAILVDDMIDTGGTICEGARLLRKEGAKQVYACATHAVFSPPAIERLSSGL- 282
Query: 86 TPSSEELISNRMSVEEIREF 105
E +++N + V E R F
Sbjct: 283 --FEEVIVTNTIPVPEERRF 300
>gnl|CDD|129436 TIGR00336, pyrE, orotate phosphoribosyltransferase. Orotate
phosphoribosyltransferase (OPRTase) is involved in the
biosynthesis of pyrimidine nucleotides.
Alpha-D-ribosyldiphosphate 5-phosphate (PRPP) and
orotate are utilized to form pyrophosphate and orotidine
5'-monophosphate (OMP) in the presence of divalent
cations, preferably Mg2+. In a number of eukaryotes,
this protein is fused to a domain that catalyses the
reaction (EC 4.1.1.23). The combined activity of EC
2.4.2.10 and EC 4.1.1.23 is termed uridine
5'-monophosphate synthase. The conserved Lys (K) residue
at position 101 of the seed alignment has been proposed
as the active site for the enzyme [Purines, pyrimidines,
nucleosides, and nucleotides, Pyrimidine ribonucleotide
biosynthesis].
Length = 173
Score = 36.6 bits (85), Expect = 0.002
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 16 QKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGA 64
++ +D G + +LEG +VVVV+D I GT+ + V +++ AG
Sbjct: 90 KEAKDHGEGGNI--EGELLEGDKVVVVEDVITTGTSILEAVEIIQAAGG 136
>gnl|CDD|232871 TIGR00201, comF, comF family protein. This protein is found in
species that do (Bacillus subtilis, Haemophilus
influenzae) or do not (E. coli, Borrelia burgdorferi)
have described systems for natural transformation with
exogenous DNA. It is involved in competence for
transformation in Bacillus subtilis [Cellular processes,
DNA transformation].
Length = 190
Score = 36.0 bits (83), Expect = 0.003
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 4 TRYEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAG 63
R +ET + +R ++ +G+ +V+VDD + G T +I RLL E G
Sbjct: 120 IRLNNETQSKLKATLRFLNLENAFDLKNNSFQGRNIVLVDDVVTTGATLHEIARLLLELG 179
Query: 64 AKEV 67
A V
Sbjct: 180 AASV 183
>gnl|CDD|234929 PRK01259, PRK01259, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 309
Score = 35.9 bits (84), Expect = 0.004
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 13/81 (16%)
Query: 30 VTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSS 89
+ G +EG+ ++VDD I T K LKE GAK V A + V + +
Sbjct: 202 IIGDVEGRDCILVDDMIDTAGTLCKAAEALKERGAKSV---------YAYATHPVLSGGA 252
Query: 90 EELISNRMSVEEIREFIGCDS 110
E I N I E + DS
Sbjct: 253 IERIEN----SVIDELVVTDS 269
>gnl|CDD|223577 COG0503, Apt, Adenine/guanine phosphoribosyltransferases and
related PRPP-binding proteins [Nucleotide transport and
metabolism].
Length = 179
Score = 35.7 bits (83), Expect = 0.004
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAK 65
G RV++VDD + G T+ ++ LL++AGA+
Sbjct: 115 PGDRVLIVDDLLATGGTALALIELLEQAGAE 145
>gnl|CDD|180714 PRK06827, PRK06827, phosphoribosylpyrophosphate synthetase;
Provisional.
Length = 382
Score = 36.1 bits (84), Expect = 0.005
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 34 LEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEV 67
+EGK V++VDD I G + + LK GAK++
Sbjct: 262 VEGKDVLIVDDMIASGGSMIDAAKELKSRGAKKI 295
>gnl|CDD|183221 PRK11595, PRK11595, DNA utilization protein GntX; Provisional.
Length = 227
Score = 35.8 bits (83), Expect = 0.005
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 34 LEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEV 67
++G+ + +VDD + G+T ++I +LL GA V
Sbjct: 185 VQGQHMAIVDDVVTTGSTVAEIAQLLLRNGAASV 218
>gnl|CDD|180928 PRK07322, PRK07322, adenine phosphoribosyltransferase; Provisional.
Length = 178
Score = 35.3 bits (82), Expect = 0.005
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 34 LEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEV 67
L+GKRV +VDD + G T + + RL++ AG + V
Sbjct: 118 LKGKRVAIVDDVVSTGGTLTALERLVERAGGQVV 151
>gnl|CDD|177930 PLN02293, PLN02293, adenine phosphoribosyltransferase.
Length = 187
Score = 35.4 bits (82), Expect = 0.006
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 30 VTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVH 68
V V G+R +V+DD I G T + LL+ AGA EV
Sbjct: 119 VGAVEPGERALVIDDLIATGGTLCAAINLLERAGA-EVV 156
>gnl|CDD|235028 PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional.
Length = 175
Score = 35.1 bits (82), Expect = 0.007
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69
+ G RV++VDD + G T ++LL+ GA+ V
Sbjct: 110 AIKPGDRVLIVDDLLATGGTLEAAIKLLERLGAEVVGA 147
>gnl|CDD|225145 COG2236, COG2236, Predicted phosphoribosyltransferases [General
function prediction only].
Length = 192
Score = 34.6 bits (80), Expect = 0.008
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 19 RDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIA 78
RD K+K L GK+V++VDD + G T + LK+ EV R A
Sbjct: 70 RDGEAKVKYPITIDPLSGKKVLIVDDIVDTGETLELALEELKKLAPAEV--RTAVLQYKK 127
Query: 79 SCYY 82
S Y
Sbjct: 128 SPDY 131
>gnl|CDD|233267 TIGR01090, apt, adenine phosphoribosyltransferase. A phylogenetic
analysis suggested omitting the bi-directional best hit
homologs from the spirochetes from the seed for This
model and making only tentative predictions of adenine
phosphoribosyltransferase function for this lineage. The
trusted cutoff score is made high for this reason. Most
proteins scoring between the trusted and noise cutoffs
are likely to act as adenine phosphotransferase
[Purines, pyrimidines, nucleosides, and nucleotides,
Salvage of nucleosides and nucleotides].
Length = 169
Score = 34.6 bits (80), Expect = 0.009
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 36 GKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVH 68
G+RV++VDD + G T+ L+++ G + V
Sbjct: 109 GQRVLIVDDLLATGGTAEATDELIRKLGGEVVE 141
>gnl|CDD|215132 PLN02238, PLN02238, hypoxanthine phosphoribosyltransferase.
Length = 189
Score = 34.2 bits (79), Expect = 0.012
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 23 VKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEV 67
K+ + + ++GK V++V+D + G T S +V L+ GA V
Sbjct: 84 AKVSGADLKIDVKGKHVLLVEDIVDTGNTLSALVAHLEAKGAASV 128
>gnl|CDD|234653 PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.
Length = 209
Score = 32.0 bits (74), Expect = 0.090
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 34 LEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMR--IASPPIIA 78
++ + V+VVD + G ++ + LLK+ GAK + + +A+P I
Sbjct: 122 IDERTVIVVDPMLATGGSAIAAIDLLKKRGAKNIKVLCLVAAPEGIK 168
>gnl|CDD|185090 PRK15136, PRK15136, multidrug efflux system protein EmrA;
Provisional.
Length = 390
Score = 32.0 bits (73), Expect = 0.12
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 27 LSPVTGVLEGKRVVVVDDSIVRGTTSSKIV---RLLKEAGAKEV---HMRIASPPIIASC 80
+SP+TG + +R V V I T +V L +A KE +MRI P I S
Sbjct: 219 VSPMTGYVS-RRSVQVGAQISPTTPLMAVVPATNLWVDANFKETQLANMRIGQPATITSD 277
Query: 81 YYGVD 85
YG D
Sbjct: 278 IYGDD 282
>gnl|CDD|183595 PRK12560, PRK12560, adenine phosphoribosyltransferase; Provisional.
Length = 187
Score = 31.3 bits (71), Expect = 0.12
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAK 65
G+ +G RV ++DD++ G T +++ ++ +G
Sbjct: 110 GIEKGDRVAIIDDTLSTGGTVIALIKAIENSGGI 143
>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport
[Inorganic ion transport and metabolism].
Length = 443
Score = 31.7 bits (72), Expect = 0.14
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 9/44 (20%)
Query: 34 LEGKRVVVVDDSIVRGTTSS--KIVRLLKEAGAKEVHMRIASPP 75
L GKRV+V+ G +S I L E GA V + SPP
Sbjct: 173 LRGKRVLVI------GAGASAVDIAPELAEVGAS-VTLSQRSPP 209
>gnl|CDD|224837 COG1926, COG1926, Predicted phosphoribosyltransferases [General
function prediction only].
Length = 220
Score = 31.1 bits (71), Expect = 0.15
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 34 LEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASP 74
L+G+ V++VDD I G T VR L+ G KE+ IA P
Sbjct: 122 LKGRTVILVDDGIATGATMKAAVRALRAKGPKEIV--IAVP 160
>gnl|CDD|167353 PRK02269, PRK02269, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 320
Score = 31.3 bits (71), Expect = 0.18
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 30 VTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVH 68
+ G ++GK+ +++DD I T L EAGA EV+
Sbjct: 211 IIGNVKGKKCILIDDMIDTAGTICHAADALAEAGATEVY 249
>gnl|CDD|235039 PRK02458, PRK02458, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 323
Score = 30.9 bits (70), Expect = 0.21
Identities = 10/39 (25%), Positives = 25/39 (64%)
Query: 30 VTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVH 68
+ G + GK+ +++DD + G T ++ ++++ GA E++
Sbjct: 212 IIGDVAGKKAILIDDILNTGKTFAEAAKIVEREGATEIY 250
>gnl|CDD|221101 pfam11382, DUF3186, Protein of unknown function (DUF3186). This
bacterial family of proteins has no known function.
Length = 307
Score = 30.8 bits (70), Expect = 0.22
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 11/47 (23%)
Query: 30 VTGVLEGKRVVVV-----DDSIVRGTTSSKIVRLLKEAGAKEVHMRI 71
V G L GK V +V DD V + L +AGA V RI
Sbjct: 77 VAGRLTGKSVALVRTPDADDDDVDA-----VSEALTQAGA-TVVGRI 117
>gnl|CDD|235960 PRK07199, PRK07199, phosphoribosylpyrophosphate synthetase;
Provisional.
Length = 301
Score = 30.7 bits (70), Expect = 0.26
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 16 QKIR--DFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEV 67
+K R D V++ L G+ V+VDD + G T + R L+ AGA
Sbjct: 190 RKTRHGDRDVEISLPDAAP-WAGRTPVLVDDIVSTGRTLIEAARQLRAAGAASP 242
>gnl|CDD|177934 PLN02297, PLN02297, ribose-phosphate pyrophosphokinase.
Length = 326
Score = 30.8 bits (70), Expect = 0.27
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 23 VKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEV 67
V++K G G+ VV+VDD + G T + ++L GA +V
Sbjct: 221 VRIK----EGNPAGRHVVIVDDLVQSGGTLIECQKVLAAHGAAKV 261
>gnl|CDD|130163 TIGR01091, upp, uracil phosphoribosyltransferase. A fairly deep
split in phylogenetic and UPGMA trees separates this
mostly prokaryotic set of uracil
phosphoribosyltransferases from a mostly eukaryotic set
that includes uracil phosphoribosyltransferase, uridine
kinases, and other, uncharacterized proteins [Purines,
pyrimidines, nucleosides, and nucleotides, Salvage of
nucleosides and nucleotides].
Length = 207
Score = 30.3 bits (69), Expect = 0.31
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 34 LEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEV 67
++ + V+V+D + G T + LLK+ GAK++
Sbjct: 120 IDERTVIVLDPMLATGGTMIAALDLLKKRGAKKI 153
>gnl|CDD|197731 smart00450, RHOD, Rhodanese Homology Domain. An alpha beta fold
found duplicated in the Rhodanese protein. The the
Cysteine containing enzymatically active version of the
domain is also found in the CDC25 class of protein
phosphatases and a variety of proteins such as sulfide
dehydrogenases and stress proteins such as Senesence
specific protein 1 in plants, PspE and GlpE in bacteria
and cyanide and arsenate resistance proteins. Inactive
versions with a loss of the cysteine are also seen in
Dual specificity phosphatases, ubiquitin hydrolases
from yeast and in sulfuryltransferases. These are
likely to play a role in protein interactions.
Length = 100
Score = 29.0 bits (65), Expect = 0.49
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEV 67
G+ + K VVV S G S+K LL+E G K V
Sbjct: 52 GLDKDKPVVVYCRS---GNRSAKAAWLLRELGFKNV 84
>gnl|CDD|235513 PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine
decarboxylase/phosphopantothenate synthase; Validated.
Length = 399
Score = 30.1 bits (69), Expect = 0.50
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 15/42 (35%)
Query: 34 LEGKRVVVVDDSIVRGTTSS-------KIVRLLKEAGAKEVH 68
L GKR+V+ G + ++VR L++AGA +V
Sbjct: 4 LAGKRIVL-------GVSGGIAAYKALELVRRLRKAGA-DVR 37
Score = 27.0 bits (61), Expect = 5.0
Identities = 33/149 (22%), Positives = 51/149 (34%), Gaps = 59/149 (39%)
Query: 1 MNTTRYEHE--------------TFIEP---SQKIRDFG-------------VKLKLSPV 30
MNT +E+ I P D G + LSP
Sbjct: 125 MNTQMWENPATQRNLATLRSRGVEIIGPASGRLACGDVGPGRMAEPEEIVAAAERALSP- 183
Query: 31 TGVLEGKRVVV--------VDDSIVRGTT--SS-K----IVRLLKEAGAKEVHMRIASPP 75
L GKRV++ +D VR T SS K + R GA +V + ++ P
Sbjct: 184 -KDLAGKRVLITAGPTREPIDP--VRYITNRSSGKMGYALARAAARRGA-DVTL-VSGPV 238
Query: 76 IIASCYYGVDTPSSEELISNRMSVEEIRE 104
+ TP+ + I + S +E+ +
Sbjct: 239 -------NLPTPAGVKRI-DVESAQEMLD 259
>gnl|CDD|215297 PLN02541, PLN02541, uracil phosphoribosyltransferase.
Length = 244
Score = 29.8 bits (67), Expect = 0.55
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRI----ASPP 75
EG RV+VVD + G T + L GA +R+ A+PP
Sbjct: 156 EGSRVLVVDPMLATGGTIVAAIDELVSRGASVEQIRVVCAVAAPP 200
>gnl|CDD|181466 PRK08558, PRK08558, adenine phosphoribosyltransferase; Provisional.
Length = 238
Score = 29.6 bits (67), Expect = 0.57
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 9 ETFIEPSQKIRDFGVKLKLS-PVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEV 67
E F E Q++ G+++ L P + + +G RV++VDD I G T ++ L ++AGA V
Sbjct: 149 EKFYEEYQRLAS-GIEVTLYLPASALKKGDRVLIVDDIIRSGETQRALLDLARQAGADVV 207
Query: 68 HM 69
+
Sbjct: 208 GV 209
>gnl|CDD|238089 cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta
fold domain found duplicated in the rhodanese protein.
The cysteine containing enzymatically active version of
the domain is also found in the Cdc25 class of protein
phosphatases and a variety of proteins such as sulfide
dehydrogenases and certain stress proteins such as
senesence specific protein 1 in plants, PspE and GlpE
in bacteria and cyanide and arsenate resistance
proteins. Inactive versions (no active site cysteine)
are also seen in dual specificity phosphatases,
ubiquitin hydrolases from yeast and in
sulfuryltransferases, where they are believed to play a
regulatory role in multidomain proteins.
Length = 89
Score = 28.4 bits (64), Expect = 0.60
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 36 GKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVH 68
K +VV S G S++ +LL++AG V+
Sbjct: 50 DKPIVVYCRS---GNRSARAAKLLRKAGGTNVY 79
>gnl|CDD|240293 PTZ00149, PTZ00149, hypoxanthine phosphoribosyltransferase;
Provisional.
Length = 241
Score = 29.4 bits (66), Expect = 0.62
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 33 VLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIAS 73
L+ K V++V+D I G T K LK+ K +RIA+
Sbjct: 147 CLKDKHVLIVEDIIDTGNTLVKFCEYLKKFEPKT--IRIAT 185
>gnl|CDD|173932 cd08173, Gro1PDH, Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH)
catalyzes the reversible conversion between
dihydroxyacetone phosphate and glycerol-1-phosphate
using either NADH or NADPH as a coenzyme.
Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC
1.1.1.261) plays an important role in the formation of
the enantiomeric configuration of the glycerophosphate
backbone (sn-glycerol-1-phosphate) of archaeal ether
lipids. It catalyzes the reversible conversion between
dihydroxyacetone phosphate and glycerol-1-phosphate
using either NADH or NADPH as a coenzyme. The activity
is zinc-dependent. One characteristic feature of
archaea is that their cellular membrane has an ether
linkage between the glycerol backbone and the
hydrocarbon residues. The polar lipids of the members
of Archaea consist of di- and tetraethers of glycerol
with isoprenoid alcohols bound at the sn-2 and sn-3
positions of the glycerol moiety. The archaeal polar
lipids have the enantiomeric configuration of a
glycerophosphate backbone [sn- glycerol-1-phosphate
(G-1-P)] that is the mirror image structure of the
bacterial or eukaryal counterpart [sn-glycerol-
3-phosphate (G-3-P)]. The absolute stereochemistry of
the glycerol moiety in all archaeal polar lipids is
opposite to that of glycerol ester lipids in bacteria
and eukarya. This protein family is only found in
Archaea.
Length = 339
Score = 29.5 bits (67), Expect = 0.65
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 22 GVKLKLSPV-TGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIAS 79
GV K+ V +L G RV+VV + K+ LL++ G EV + I
Sbjct: 10 GVLEKIPNVLRDLLLGGRVLVVTGPTTKSIAGKKVEALLEDEG--EVDVVIVEDATYEE 66
>gnl|CDD|233406 TIGR01420, pilT_fam, pilus retraction protein PilT. This model
represents the PilT subfamily of proteins related to
GspE, a protein involved in type II secretion (also
called the General Secretion Pathway). PilT is an
apparent cytosolic ATPase associated with type IV pilus
systems. It is not required for pilin biogenesis, but is
required for twitching motility and social gliding
behaviors, shown in some species, powered by pilus
retraction. Members of this family may be found in some
species that type IV pili but have related structures
for DNA uptake and natural transformation [Cell
envelope, Surface structures, Cellular processes,
Chemotaxis and motility].
Length = 343
Score = 29.6 bits (67), Expect = 0.68
Identities = 11/59 (18%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 54 KIVRLLKEAGAKEVHMRIASPP-------IIASCYYGVDTPSSEELISNRMSVEEIREF 105
+I+R + GA ++H+ +PP ++ + + +++L +S ++ EF
Sbjct: 4 EILREAVKLGASDIHLTAGAPPAMRIDGDLVRIEFEPLTPEDTQKLAREILSEKQREEF 62
>gnl|CDD|130270 TIGR01203, HGPRTase, hypoxanthine phosphoribosyltransferase.
Alternate name: hypoxanthine-guanine
phosphoribosyltransferase. Sequence differences as small
as a single residue can affect whether members of this
family act on hypoxanthine and guanine or hypoxanthine
only. The designation of this model as equivalog
reflects hypoxanthine specificity and does not reflect
whether or not guanine can replace hypoxanthine
[Purines, pyrimidines, nucleosides, and nucleotides,
Salvage of nucleosides and nucleotides].
Length = 166
Score = 28.8 bits (65), Expect = 0.87
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIAS 73
+GK V++V+D + G T ++ LLK K ++I +
Sbjct: 83 KGKDVLIVEDIVDTGLTLQYLLDLLKARKPKS--LKIVT 119
>gnl|CDD|237519 PRK13812, PRK13812, orotate phosphoribosyltransferase; Provisional.
Length = 176
Score = 28.6 bits (64), Expect = 0.93
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGA 64
EG+ VVV++D G ++ V L+EAGA
Sbjct: 106 EGEEVVVLEDIATTGQSAVDAVEALREAGA 135
>gnl|CDD|239280 cd02982, PDI_b'_family, Protein Disulfide Isomerase (PDIb') family,
redox inactive TRX-like domain b'; composed of
eukaryotic proteins involved in oxidative protein
folding in the endoplasmic reticulum (ER) by acting as
catalysts and folding assistants. Members of this family
include PDI, calsequestrin and other PDI-related
proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and
PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases,
catalyzing the formation of disulfide bonds of newly
synthesized polypeptides in the ER. They also exhibit
reductase activity in acting as isomerases to correct
any non-native disulfide bonds, as well as chaperone
activity to prevent protein aggregation and facilitate
the folding of newly synthesized proteins. These
proteins contain multiple copies of a redox active TRX
(a) domain containing a CXXC motif, and one or more
redox inactive TRX-like (b) domains. The molecular
structure of PDI is abb'a'. Also included in this family
is the PDI-related protein ERp27, which contains only
redox-inactive TRX-like (b and b') domains. The redox
inactive domains are implicated in substrate recognition
with the b' domain serving as the primary substrate
binding site. Only the b' domain is necessary for the
binding of small peptide substrates. In addition to the
b' domain, other domains are required for the binding of
larger polypeptide substrates. The b' domain is also
implicated in chaperone activity.
Length = 103
Score = 28.0 bits (63), Expect = 0.94
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 16/88 (18%)
Query: 81 YYGVDTPSSEELISNRMSVEEI-REFIGCDSLAFLLIDS------LNKMLGDDSQNFCYA 133
+Y D SEEL +E+ ++F G L F+++D+ L + A
Sbjct: 19 FYNKDDSESEELRER---FKEVAKKFKG--KLLFVVVDADDFGRHLEYFGLKEEDLPVIA 73
Query: 134 CFS----GKYPVKPEEMKVKRVGEFVDD 157
+ KY + EE+ + + EFV+D
Sbjct: 74 IINLSDGKKYLMPEEELTAESLEEFVED 101
>gnl|CDD|130805 TIGR01744, XPRTase, xanthine phosphoribosyltransferase. This model
represent a xanthine-specific phosphoribosyltransferase
of Bacillus subtilis and closely related proteins from
other species, mostly from other Gram-positive bacteria.
The adjacent gene is a xanthine transporter; B. subtilis
can import xanthine for the purine salvage pathway or
for catabolism to obtain nitrogen [Purines, pyrimidines,
nucleosides, and nucleotides, Salvage of nucleosides and
nucleotides].
Length = 191
Score = 28.6 bits (64), Expect = 1.2
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 38 RVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRI 71
RV+++DD + G + +V + K+AGAK + I
Sbjct: 119 RVLIIDDFLANGQAAHGLVDIAKQAGAKIAGIGI 152
>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of
Eumetazoan signaling molecules, often in tandem
arrangements. May be responsible for specific
protein-protein interactions, as most PDZ domains bind
C-terminal polypeptides, and binding to internal
(non-C-terminal) polypeptides and even to lipids has
been demonstrated. In this subfamily of PDZ domains an
N-terminal beta-strand forms the peptide-binding groove
base, a circular permutation with respect to PDZ
domains found in proteases.
Length = 82
Score = 27.5 bits (62), Expect = 1.2
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIA 72
G+ G R++ V+ V G T + V LLK +G EV + +
Sbjct: 43 GLRVGDRILEVNGVSVEGLTHEEAVELLKNSG-DEVTLTVR 82
>gnl|CDD|181843 PRK09423, gldA, glycerol dehydrogenase; Provisional.
Length = 366
Score = 28.2 bits (64), Expect = 1.7
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 10 TFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAG 63
FI PS+ ++ G +L L GKR +V+ D V G ++ LKEAG
Sbjct: 4 IFISPSKYVQGKGALARLGEYLKPL-GKRALVIADEFVLGIVGDRVEASLKEAG 56
>gnl|CDD|133452 cd05213, NAD_bind_Glutamyl_tRNA_reduct, NADP-binding domain of
glutamyl-tRNA reductase. Glutamyl-tRNA reductase
catalyzes the conversion of glutamyl-tRNA to
glutamate-1-semialdehyde, initiating the synthesis of
tetrapyrrole. Whereas tRNAs are generally associated
with peptide bond formation in protein translation, here
the tRNA activates glutamate in the initiation of
tetrapyrrole biosynthesis in archaea, plants and many
bacteria. In the first step, activated glutamate is
reduced to glutamate-1-semi-aldehyde via the NADPH
dependent glutamyl-tRNA reductase. Glutamyl-tRNA
reductase forms a V-shaped dimer. Each monomer has 3
domains: an N-terminal catalytic domain, a classic
nucleotide binding domain, and a C-terminal dimerization
domain. Although the representative structure 1GPJ lacks
a bound NADPH, a theoretical binding pocket has been
described. (PMID 11172694). Amino acid dehydrogenase
(DH)-like NAD(P)-binding domains are members of the
Rossmann fold superfamily and include glutamate,
leucine, and phenylalanine DHs, methylene
tetrahydrofolate DH, methylene-tetrahydromethanopterin
DH, methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+ as
a cofactor. The NAD(P)-binding Rossmann fold superfamily
includes a wide variety of protein families including
NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 311
Score = 28.4 bits (64), Expect = 1.7
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 21 FGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69
V+L + G L+GK+V+V+ G + L G E+ +
Sbjct: 164 AAVEL-AEKIFGNLKGKKVLVIGA----GEMGELAAKHLAAKGVAEITI 207
>gnl|CDD|180604 PRK06523, PRK06523, short chain dehydrogenase; Provisional.
Length = 260
Score = 27.9 bits (63), Expect = 1.8
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 34 LEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAK 65
L GKR +V + +G ++ V L EAGA+
Sbjct: 7 LAGKRALVTGGT--KGIGAA-TVARLLEAGAR 35
>gnl|CDD|234094 TIGR03026, NDP-sugDHase, nucleotide sugar dehydrogenase. Enzymes
in this family catalyze the NAD-dependent
alcohol-to-acid oxidation of nucleotide-linked sugars.
Examples include UDP-glucose 6-dehydrogenase (1.1.1.22)
, GDP-mannose 6-dehydrogenase (1.1.1.132) ,
UDP-N-acetylglucosamine 6-dehydrogenase (1.1.1.136),
UDP-N-acetyl-D-galactosaminuronic acid dehydrogenase and
UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase.
These enzymes are most often involved in the
biosynthesis of polysaccharides and are often found in
operons devoted to that purpose. All of these enzymes
contain three Pfam domains, pfam03721, pfam00984, and
pfam03720 for the N-terminal, central, and C-terminal
regions respectively.
Length = 409
Score = 28.3 bits (64), Expect = 2.0
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 10/42 (23%)
Query: 32 GVLEGKRVVV--------VDDSIVRGTTSSKIVRLLKEAGAK 65
G L+GK V++ DD VR + + I+ LLKE GAK
Sbjct: 307 GALKGKTVLILGLAFKPNTDD--VRESPALDIIELLKEKGAK 346
>gnl|CDD|233377 TIGR01367, pyrE_Therm, orotate phosphoribosyltransferase, Thermus
family. This model represents a distinct clade of
orotate phosphoribosyltransferases. Members include the
experimentally determined example from Thermus aquaticus
and additional examples from Caulobacter crescentus,
Helicobacter pylori, Mesorhizobium loti, and related
species [Purines, pyrimidines, nucleosides, and
nucleotides, Pyrimidine ribonucleotide biosynthesis].
Length = 187
Score = 27.8 bits (62), Expect = 2.0
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 33 VLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEV 67
V G++ V V+D + G + + +R ++ G + V
Sbjct: 102 VKPGEKFVAVEDVVTTGGSLLEAIRAIEGQGGQVV 136
>gnl|CDD|181705 PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated.
Length = 189
Score = 27.8 bits (63), Expect = 2.2
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIA 72
EG RV+++DD + G + ++ ++++AGAK + I
Sbjct: 116 EGDRVLIIDDFLANGQAALGLIDIIEQAGAKVAGIGIV 153
>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and
related oxidoreductases [Amino acid transport and
metabolism / General function prediction only].
Length = 457
Score = 28.0 bits (63), Expect = 2.2
Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 24 KLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVH 68
T +GKRVVV+ G T+ GAK V
Sbjct: 250 GDFAEDRTPPAKGKRVVVIGG----GDTAMDCAGTALRLGAKSVT 290
>gnl|CDD|237278 PRK13029, PRK13029, 2-oxoacid ferredoxin oxidoreductase;
Provisional.
Length = 1186
Score = 28.2 bits (63), Expect = 2.2
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 25/76 (32%)
Query: 34 LEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSSEELI 93
LEGK V V+D + L ++ GA H++IA+ P L
Sbjct: 770 LEGKGVSVLD-----------MAGLAQKGGAVLSHIQIAATP--------------AALH 804
Query: 94 SNRMSVEEIREFIGCD 109
+ R+ E I CD
Sbjct: 805 ATRIDTGEADLVIACD 820
>gnl|CDD|236124 PRK07889, PRK07889, enoyl-(acyl carrier protein) reductase;
Provisional.
Length = 256
Score = 28.0 bits (63), Expect = 2.3
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 9/41 (21%)
Query: 31 TGVLEGKRV----VVVDDSIVRGTTSSKIVRLLKEAGAKEV 67
G+LEGKR+ V+ D SI + + R+ +E GA+ V
Sbjct: 2 MGLLEGKRILVTGVITDSSI-----AFHVARVAQEQGAEVV 37
>gnl|CDD|227220 COG4883, COG4883, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 500
Score = 28.0 bits (62), Expect = 2.4
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 41 VVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDT 86
VVD ++V G+TS+ + R+LK+ H + I++S +G++T
Sbjct: 141 VVDFALVPGSTSNVVNRILKKMDIPVEHKQ----AILSSKSWGMNT 182
>gnl|CDD|237518 PRK13811, PRK13811, orotate phosphoribosyltransferase; Provisional.
Length = 170
Score = 27.5 bits (61), Expect = 2.4
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 19 RDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGA 64
+D G K + G ++GKRV++V+D G ++ + L+ AGA
Sbjct: 90 KDHG---KAGLIIGDVKGKRVLLVEDVTTSGGSALYGIEQLRAAGA 132
>gnl|CDD|173938 cd08179, NADPH_BDH, NADPH-dependent butanol dehydrogenase
involved in the butanol and ethanol formation pathway
in bacteria. NADPH-dependent butanol dehydrogenase
(BDH) is involved in the butanol and ethanol formation
pathway of some bacteria. The fermentation process is
characterized by an acid producing growth phase,
followed by a solvent producing phase. The latter phase
is associated with the induction of solventogenic
enzymes such as butanol dehydrogenase. The activity of
the enzymes require NADPH as cofactor, as well as
divalent ions zinc or iron. This family is a member of
the iron-containing alcohol dehydrogenase superfamily.
Protein structure has a dehydroquinate synthase-like
fold.
Length = 375
Score = 27.6 bits (62), Expect = 2.9
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 34 LEGKRVVVV--DDSIVRGTTSSKIVRLLKEAGAK-EVHMRIASPPIIASCYYGV 84
L+GK+ +V S+ + K+ LKEAG + EV + P + + G
Sbjct: 21 LKGKKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGA 74
>gnl|CDD|235138 PRK03604, moaC, bifunctional molybdenum cofactor biosynthesis
protein MoaC/MogA; Provisional.
Length = 312
Score = 27.6 bits (62), Expect = 3.1
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 22 GVKLKLSPVTGVLEGKRVVVVDDSIVRGT---TSSKIVR-LLKEAGAKEVHMRI 71
G K + P T V+V+ DSI GT S K++ L+EAG + H I
Sbjct: 147 GHKRRFRPRTSA----AVLVLSDSIAAGTKEDRSGKLIVEGLEEAGFEVSHYTI 196
>gnl|CDD|216230 pfam00994, MoCF_biosynth, Probable molybdopterin binding domain.
This domain is found a variety of proteins involved in
biosynthesis of molybdopterin cofactor. The domain is
presumed to bind molybdopterin. The structure of this
domain is known, and it forms an alpha/beta structure.
In the known structure of Gephyrin this domain mediates
trimerisation.
Length = 140
Score = 26.8 bits (60), Expect = 3.3
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 39 VVVVDDSIVRG----TTSSKIVRLLKEAGAKEVHMRI 71
++ D ++ G T + LL+EAGA+ + I
Sbjct: 2 IITTGDELLSGQIYDTNGPLLAALLREAGAEVIRYGI 38
>gnl|CDD|204693 pfam11626, Rap1_C, Rap1 - C terminal domain. This family of
proteins represents the C-terminal domain of the
protein Rap-1, which plays a distinct role in silencing
at the silent mating-type loci and telomeres. The Rap-1
C terminus adopts an all-helical fold. Rap1 carries out
its function by recruiting the Sir3 and Sir4 proteins
to chromatin via its C terminal domain.
Length = 68
Score = 25.7 bits (57), Expect = 4.1
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 43 DDSIVRGTTSSKIVRLLKEAGAKEVHMRI 71
DD + +I RLLK+ G+ MR
Sbjct: 38 DDECLESNDGREIERLLKKHGSGRFEMRW 66
>gnl|CDD|220447 pfam09861, DUF2088, Domain of unknown function (DUF2088). This
domain, found in various hypothetical prokaryotic
proteins, has no known function.
Length = 203
Score = 26.8 bits (60), Expect = 4.4
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 33 VLEGKRVVVVDDSIVRGTTSSKIVRL----LKEAGAKEVHMRI 71
V G++VV+V I R T S I+ L L G + + I
Sbjct: 51 VKPGEKVVIVVSDITRPTPSDIILPLLLEELNAVGIPDEDITI 93
>gnl|CDD|221879 pfam12975, DUF3859, Domain of unknown function (DUF3859). This
short domain is functionally uncharacterized.
Length = 125
Score = 26.5 bits (59), Expect = 4.7
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 55 IVRLLKEAGAKEVHMRIASPPIIA 78
+ K G K + + I P I
Sbjct: 47 RYNIKKAKGDKPLTVCITHPGIPD 70
>gnl|CDD|206651 cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1). This group
represents Arabidoposis protein AIG1 (avrRpt2-induced
gene 1) that appears to be involved in plant resistance
to bacteria. The Arabidopsis disease resistance gene
RPS2 is involved in recognition of bacterial pathogens
carrying the avirulence gene avrRpt2. AIG1 exhibits
RPS2- and avrRpt1-dependent induction early after
infection with Pseudomonas syringae carrying avrRpt2.
This subfamily also includes IAN-4 protein, which has
GTP-binding activity and shares sequence homology with
a novel family of putative GTP-binding proteins: the
immuno-associated nucleotide (IAN) family. The
evolutionary conservation of the IAN family provides a
unique example of a plant pathogen response gene
conserved in animals. The IAN/IMAP subfamily has been
proposed to regulate apoptosis in vertebrates and
angiosperm plants, particularly in relation to cancer,
diabetes, and infections. The human IAN genes were
renamed GIMAP (GTPase of the immunity associated
proteins).
Length = 201
Score = 26.7 bits (60), Expect = 5.4
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 7/30 (23%)
Query: 21 FGVKLKLSPVT-------GVLEGKRVVVVD 43
F KL S VT V +G+RV V+D
Sbjct: 26 FESKLSASGVTKTCQKESAVWDGRRVNVID 55
>gnl|CDD|217844 pfam04015, DUF362, Domain of unknown function (DUF362). Domain
that is sometimes present in iron-sulphur proteins.
Length = 203
Score = 26.3 bits (59), Expect = 5.9
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 9/33 (27%)
Query: 55 IVRLLKEAGAKEVHMRIASPPIIA-SCYYGVDT 86
+V L+KEAGAKEV I+ S G T
Sbjct: 28 VVELVKEAGAKEV--------IVGDSPGGGAST 52
>gnl|CDD|187626 cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs.
Human DHRS6, and similar proteins. These proteins are
classical SDRs, with a canonical active site tetrad and
a close match to the typical Gly-rich NAD-binding motif.
Human DHRS6 is a cytosolic type 2 (R)-hydroxybutyrate
dehydrogenase, which catalyses the conversion of
(R)-hydroxybutyrate to acetoacetate. Also included in
this subgroup is Escherichia coli UcpA (upstream cys P).
Classical SDRs are typically about 250 residues long,
while extended SDRs are approximately 350 residues.
Sequence identity between different SDR enzymes are
typically in the 15-30% range, but the enzymes share the
Rossmann fold NAD-binding motif and characteristic
NAD-binding and catalytic sequence patterns. These
enzymes catalyze a wide range of activities including
the metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase (15-PGDH)
numbering). In addition to the Tyr and Lys, there is
often an upstream Ser (Ser-138, 15-PGDH numbering)
and/or an Asn (Asn-107, 15-PGDH numbering) contributing
to the active site; while substrate binding is in the
C-terminal region, which determines specificity. The
standard reaction mechanism is a 4-pro-S hydride
transfer and proton relay involving the conserved Tyr
and Lys, a water molecule stabilized by Asn, and
nicotinamide. Extended SDRs have additional elements in
the C-terminal region, and typically have a TGXXGXXG
cofactor binding motif. Complex (multidomain) SDRs such
as ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction. Note: removed :
needed to make this chiodl smaller when drew final
trees: rmeoved text form description: Other proteins in
this subgroup include Thermoplasma acidophilum
aldohexose dehydrogenase, which has high dehydrogenase
activity against D-mannose, Bacillus subtilis BacC
involved in the biosynthesis of the dipeptide bacilysin
and its antibiotic moiety anticapsin, Sphingomonas
paucimobilis strain B90 LinC, involved in the
degradation of hexachlorocyclohexane isomers...... P).
Length = 241
Score = 26.7 bits (59), Expect = 6.0
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
Query: 27 LSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDT 86
+S V ++G V + V TT + ++ L K A I I C VDT
Sbjct: 127 MSSVASSIKG-----VPNRFVYSTTKAAVIGLTKSVAADFAQQGIRCNAI---CPGTVDT 178
Query: 87 PSSEELISNRMSVEEIR 103
PS EE I + EE
Sbjct: 179 PSLEERIQAQPDPEEAL 195
>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2. Also
called DHR (Dlg homologous region) or GLGF (relatively
well conserved tetrapeptide in these domains). Some
PDZs have been shown to bind C-terminal polypeptides;
others appear to bind internal (non-C-terminal)
polypeptides. Different PDZs possess different binding
specificities.
Length = 85
Score = 25.4 bits (56), Expect = 6.2
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPP 75
G+ G ++ V+ + V G T + V LLK+AG +V + +
Sbjct: 43 GLRVGDVILEVNGTSVEGLTHLEAVDLLKKAG-GKVTLTVLRGG 85
>gnl|CDD|223113 COG0035, Upp, Uracil phosphoribosyltransferase [Nucleotide
transport and metabolism].
Length = 210
Score = 26.4 bits (59), Expect = 6.3
Identities = 11/45 (24%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 34 LEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKE----VHMRIASP 74
++ + V+V+D + G ++ + LLK+ G + V + +A+P
Sbjct: 122 IDERTVIVLDPMLATGGSAIAAIDLLKKRGGPKNIKVVSL-VAAP 165
>gnl|CDD|179062 PRK00553, PRK00553, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 332
Score = 26.4 bits (58), Expect = 6.5
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 30 VTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEV 67
V G ++ K ++VDD I G T +LLK+ AK+V
Sbjct: 212 VLGEVKNKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKV 249
>gnl|CDD|222410 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Esterase family found
in Pmr5 and Cas1p. The PC-Esterase family is comprised
of Cas1p, the Homo sapiens C7orf58, Arabidopsis
thaliana PMR5 and a group of plant freezing
resistance/coldacclimatization proteins typified by
Arabidopsis thaliana ESKIMO1, animal FAM55D proteins,
and animal FAM113 proteins. The PC-Esterase family has
features that are both similar and different from the
canonical GDSL/SGNH superfamily. The members of this
family are predicted to have Acyl esterase activity and
predicted to modify cell-surface biopolymers such as
glycans and glycoproteins. The Cas1p protein has a
Cas1_AcylT domain, in addition, with the opposing
acyltransferase activity. The C7orf58 family has a
ATP-Grasp domain fused to the PC-Esterase and is the
first identified secreted tubulin-tyrosine ligase like
enzyme in eukaryotes. The plant family with PMR5, ESK1,
TBL3 etc have a N-terminal C rich potential sugar
binding domain followed by the PC-Esterase domain.
Length = 270
Score = 26.6 bits (59), Expect = 6.6
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 9/36 (25%)
Query: 14 PSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRG 49
P + F +L+ GKRVV V DS+ R
Sbjct: 2 PRFDAQQFLERLR---------GKRVVFVGDSLSRN 28
>gnl|CDD|217147 pfam02618, YceG, YceG-like family. This family of proteins is
found in bacteria. Proteins in this family are typically
between 332 and 389 amino acids in length. This family
was previously incorrectly annotated and names as
aminodeoxychorismate lyase. The structure of Escherichia
coli yceG was solved by X-ray crystallography.
Length = 291
Score = 26.3 bits (59), Expect = 6.8
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 13/68 (19%)
Query: 39 VVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPI--IASCYYGVDTP--SSEELIS 94
VVV I G++ S+I +L+EAG I S + + G D + E +
Sbjct: 1 VVVT---IPPGSSLSQIADILEEAGV------IKSALAFRLYARLKGKDGKLKAGEYELK 51
Query: 95 NRMSVEEI 102
MS EI
Sbjct: 52 PGMSAAEI 59
>gnl|CDD|188681 cd08726, RGS_RGS22_3, Regulator of G protein signaling domain
RGS_RGS22_3. The RGS (Regulator of G-protein Signaling)
domain found in the RGS22 protein, a member of the
RA/RGS subfamily of the RGS protein family. They are a
diverse group of multifunctional proteins that regulate
cellular signaling events downstream of G-protein
coupled receptors (GPCRs). RGS proteins regulate many
aspects of embryonic development such as glial
differentiation, embryonic axis formation, skeletal and
muscle development, cell migration during early
embryogenesis, as well as apoptosis, cell proliferation,
and modulation of cardiac development. RGS22 contains at
least 3 copies of the RGS domain in vertebrata and
exists in multiple splicing variants. RGS22 is
predominantly expressed in testis and believed to play
an important role in spermatogenesis.
Length = 130
Score = 25.9 bits (57), Expect = 7.1
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 90 EELISNRMSVEEIREFI-----GCDSLAFLLIDSLNKMLGDD 126
++L+ NR+ +E R+F+ D L +L I+ ++ D
Sbjct: 2 QDLLHNRLELEFFRKFLEENSASMDLLCWLDIEQFRRIPHTD 43
>gnl|CDD|223364 COG0287, TyrA, Prephenate dehydrogenase [Amino acid transport and
metabolism].
Length = 279
Score = 26.1 bits (58), Expect = 7.5
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 34 LEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69
E VV+ ++ RL + GA+ V M
Sbjct: 134 FENAVVVLTPSEGTEKEWVEEVKRLWEALGARLVEM 169
>gnl|CDD|222318 pfam13685, Fe-ADH_2, Iron-containing alcohol dehydrogenase.
Length = 247
Score = 26.4 bits (59), Expect = 7.8
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 22 GVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAG 63
G +L + L GK+V+VV D K+ LKEAG
Sbjct: 5 GALSRLGEILAKLGGKKVLVVADENTYKAAGEKVEESLKEAG 46
>gnl|CDD|212167 cd11653, rap1_RCT, C-terminal domain of RAP1 recruits proteins to
telomeres. The RAP1 (repressor activator protein 1)
C-terminal domain (RCT) mediates interactions with
other proteins such as TRF2 (human), Rif1, Rif2, Sir3,
Sir4 (Saccharomyces cerevisiae), and Taz1
(Schizosaccharomyces pombe) at telomeres and other
loci. RAP1, identified in budding yeast as
repressor/activator protein 1, is a well-conserved
telomere binding protein, also found in fission yeast
and mammals. In Saccharomyces cerevisiae, RAP1 directly
binds DNA and is involved in transcriptional
activation, gene silencing, as well as binding at
numerous sites at each telemore, where it functions in
telomere length regulation, telomeric position effect
gene silencing and telomere end protection. Human RAP1
apparently does not bind telomeric DNA directly, but
binds telomere repeat binding factor 2 (TRF2) via the
RCT. RAP1 might act by suppressing nonhomologous
end-joining. Yeast RAP1 has two myb-type DNA binding
modules, and an RCT domain that recruits Sir proteins 3
and 4 (Sir3, Sir4) for gene silencing, and Rif1 and
Rif2 for telomere length maintenance.
Schizosaccharomyces pombe RAP1 (spRap1), like human
RAP1, lacks direct DNA-binding activity and is
localized to telomeres via Taz1, an ortholog of TRF1
and TRF2. The S. pompe RCT resembles the first 3-helix
bundle of the yeast and human RCT forms, but is not
included in this larger model.
Length = 100
Score = 25.4 bits (56), Expect = 8.7
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 43 DDSIVRGTTSSKIVRLLKEAGAKEVHMRIA 72
DD ++ I RL+K+ GA+ V R
Sbjct: 67 DDECLQSDDPRTIERLIKKHGAENVARRWE 96
>gnl|CDD|179893 PRK04923, PRK04923, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 319
Score = 26.0 bits (57), Expect = 9.5
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 30 VTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASP 74
+ G ++GK V+VDD + T LK+ GA +V I P
Sbjct: 211 IIGDVQGKTCVLVDDLVDTAGTLCAAAAALKQRGALKVVAYITHP 255
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.389
Gapped
Lambda K H
0.267 0.0658 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,130,637
Number of extensions: 751666
Number of successful extensions: 1113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1101
Number of HSP's successfully gapped: 126
Length of query: 158
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 69
Effective length of database: 6,990,096
Effective search space: 482316624
Effective search space used: 482316624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.1 bits)