RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 045545
(158 letters)
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine
amidotransferase, prtase, purine biosynthesis,
phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus
subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*
Length = 459
Score = 268 bits (688), Expect = 5e-90
Identities = 82/152 (53%), Positives = 112/152 (73%), Gaps = 5/152 (3%)
Query: 5 RYEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGA 64
RY TFI+PSQ +R+ GV++KLS V GV+EGKRVV+VDDSIVRGTTS +IV +L+EAGA
Sbjct: 307 RYVGRTFIQPSQALREQGVRMKLSAVRGVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGA 366
Query: 65 KEVHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFIGCDSLAFLLIDSLNKMLG 124
EVH++I+SPPI C+YG+DT + EELI++ SVEEIR+ IG D+L+FL ++ L K +G
Sbjct: 367 TEVHVKISSPPIAHPCFYGIDTSTHEELIASSHSVEEIRQEIGADTLSFLSVEGLLKGIG 426
Query: 125 DDSQN----FCYACFSGKYPVK-PEEMKVKRV 151
+ C ACF+GKYP + ++ + V
Sbjct: 427 RKYDDSNCGQCLACFTGKYPTEIYQDTVLPHV 458
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine
biosynthesis, transferase, glycosyltransferase, gluta
amidotransferase; HET: PIN; 2.00A {Escherichia coli}
SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A*
1ecj_A*
Length = 504
Score = 245 bits (629), Expect = 1e-80
Identities = 59/142 (41%), Positives = 84/142 (59%), Gaps = 3/142 (2%)
Query: 5 RYEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGA 64
RY TFI P Q++R V+ KL+ K V++VDDSIVRGTTS +I+ + +EAGA
Sbjct: 328 RYVGRTFIMPGQQLRRKSVRRKLNANRAEFRDKNVLLVDDSIVRGTTSEQIIEMAREAGA 387
Query: 65 KEVHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFIGCDSLAFLLIDSLNKMLG 124
K+V++ A+P I YG+D PS+ ELI++ V+EIR+ IG D L F ++ L +
Sbjct: 388 KKVYLASAAPEIRFPNVYGIDMPSATELIAHGREVDEIRQIIGADGLIFQDLNDLIDAVR 447
Query: 125 D---DSQNFCYACFSGKYPVKP 143
D Q F + F+G Y K
Sbjct: 448 AENPDIQQFECSVFNGVYVTKD 469
>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1
Length = 208
Score = 42.3 bits (99), Expect = 1e-05
Identities = 9/42 (21%), Positives = 21/42 (50%)
Query: 34 LEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPP 75
+G+ VV+VDD + G + + ++ + G + V + +
Sbjct: 118 RKGRDVVLVDDGVATGASMEAALSVVFQEGPRRVVVAVPVAS 159
>1u9y_A RPPK;, ribose-phosphate pyrophosphokinase; PRPP synthase,
transferase; 2.65A {Methanocaldococcus jannaschii} SCOP:
c.61.1.2 c.61.1.2 PDB: 1u9z_A*
Length = 284
Score = 42.5 bits (101), Expect = 2e-05
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Query: 30 VTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSS 89
T + + V +VDD I G T + V+LLKE GAK++ A+C + V +
Sbjct: 199 KTLDAKDRDVFIVDDIISTGGTMATAVKLLKEQGAKKII---------AACVHPVLIGDA 249
Query: 90 EELISNRMSVEEIREFIGCDSL 111
+ + + E +G D+
Sbjct: 250 LNKLYS----AGVEEVVGTDTY 267
>3lrt_A Ribose-phosphate pyrophosphokinase; phosphoribosyl transferase, ATP
analog binding, ATP-binding, metal-binding, nucleotide
biosynthesis; HET: ADP; 1.53A {Thermoplasma volcanium}
PDB: 3lpn_A* 3nag_A* 3mbi_A*
Length = 286
Score = 41.7 bits (99), Expect = 2e-05
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Query: 30 VTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSS 89
+ GK++++VDD I G T +K LL+E GA +++ S +G+ S
Sbjct: 197 PNVDVNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIY---------VSAVHGLFVNGS 247
Query: 90 EELISNRMSVEEI 102
E I + +EI
Sbjct: 248 ENKILQ--NADEI 258
>2ps1_A Orotate phosphoribosyltransferase 1; alpha beta, oprtase-OA-PRPP
complex; HET: ORO PRP; 1.75A {Saccharomyces cerevisiae}
PDB: 2pry_A* 2prz_A*
Length = 226
Score = 38.7 bits (90), Expect = 2e-04
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 11 FIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMR 70
+ ++ +D G + V LE KR++++DD + GT ++ ++ A + V
Sbjct: 102 YAFNRKEAKDHGEGGII--VGSALENKRILIIDDVMTAGTAINEAFEIISNAKGQVVGSI 159
Query: 71 IA 72
IA
Sbjct: 160 IA 161
>1dku_A Protein (phosphoribosyl pyrophosphate synthetase); open alpha-beta
structure, domain duplication, phosphoribosyltransferase
type I fold; HET: AP2 ABM; 2.20A {Bacillus subtilis}
SCOP: c.61.1.2 c.61.1.2 PDB: 1dkr_A* 1ibs_A*
Length = 317
Score = 39.1 bits (92), Expect = 2e-04
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 13/82 (15%)
Query: 30 VTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSS 89
+ G +EGK +++DD I T + L E GAKEV+ A C + V + +
Sbjct: 211 IVGNIEGKTAILIDDIIDTAGTITLAANALVENGAKEVY---------ACCTHPVLSGPA 261
Query: 90 EELISNRMSVEEIREFIGCDSL 111
E I+N I+E + +S+
Sbjct: 262 VERINN----STIKELVVTNSI 279
>3mjd_A Orotate phosphoribosyltransferase; IDP02311, csgid, structural
genomics, center for structural genomics of infectious
diseases; 1.90A {Francisella tularensis}
Length = 232
Score = 38.6 bits (90), Expect = 3e-04
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 30 VTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIA 72
V + K+V+++DD + GT + LK AK + ++
Sbjct: 130 VGADMTNKKVLLIDDVMTAGTAFYESYNKLKIINAKIAGVVLS 172
>1vdm_A Purine phosphoribosyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 2.50A
{Pyrococcus horikoshii} SCOP: c.61.1.1
Length = 153
Score = 38.0 bits (89), Expect = 3e-04
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 22 GVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVH 68
+ P+ G L+ KRVV+VDD G T ++ +K+ GAKE+
Sbjct: 69 EKPVITIPIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIK 115
>2xbu_A Hypoxanthine-guanine phosphoribosyltransferase;
glycosyltransferase, purine salvage, FLIP pepti; HET:
5GP; 1.80A {Saccharomyces cerevisiae} PDB: 2jkz_A*
2jky_A*
Length = 221
Score = 37.8 bits (87), Expect = 6e-04
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 4/72 (5%)
Query: 1 MNTTRYEHETFIEPSQKIRDFGVK----LKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIV 56
+ + YE + + V + L GK V++VD+ TT +
Sbjct: 64 IILSLYEDLNSVGSEVEEVGVKVSRTQWIDYEQCKLDLVGKNVLIVDEVDDTRTTLHYAL 123
Query: 57 RLLKEAGAKEVH 68
L++ A++
Sbjct: 124 SELEKDAAEQAK 135
>3dah_A Ribose-phosphate pyrophosphokinase; pyrophosphoki seattle
structural genomics center for infectious disease,
magnesium, metal binding; HET: AMP; 2.30A {Burkholderia
pseudomallei}
Length = 319
Score = 37.2 bits (87), Expect = 0.001
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
Query: 30 VTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSS 89
+ G +EG+ V++DD + T K ++LKE GAK+V A + V + +
Sbjct: 210 IIGEVEGRTCVIMDDMVDTAGTLCKAAQVLKERGAKQVF---------AYATHPVLSGGA 260
Query: 90 EELISNRMSVEEIREFIGCDS 110
+ I+ + E + D+
Sbjct: 261 ADRIAA----SALDELVVTDT 277
>2yzk_A OPRT, oprtase, orotate phosphoribosyltransferase; rossmann fold,
glycosyltransferase, magnesium, pyrimidine biosynthesis,
structural genomics; 1.80A {Aeropyrum pernix}
Length = 178
Score = 36.4 bits (85), Expect = 0.001
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69
G RVVVVDD GT+ +K + +L+ G
Sbjct: 102 GDPPKGRVVVVDDVATTGTSIAKSIEVLRSNGYTVGTA 139
>2p1z_A Phosphoribosyltransferase; STRU genomics, PSI-2, protein structure
initiative, midwest CENT structural genomics, MCSG;
2.44A {Corynebacterium diphtheriae}
Length = 180
Score = 36.5 bits (85), Expect = 0.001
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 33 VLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69
+ GK+V+VV+D+ G + V+ L+EAGA+ V +
Sbjct: 111 DVVGKKVLVVEDTTTTGNSPLTAVKALREAGAEVVGV 147
>2wns_A Orotate phosphoribosyltransferase; alternative splicing,
multifunctional enzyme, lyase, polymorphism,
decarboxylase, phosphoprotein; HET: OMP; 1.90A {Homo
sapiens}
Length = 205
Score = 36.5 bits (85), Expect = 0.002
Identities = 7/37 (18%), Positives = 20/37 (54%)
Query: 33 VLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69
+ G+ ++++D + G++ + V +L++ G K
Sbjct: 108 INPGETCLIIEDVVTSGSSVLETVEVLQKEGLKVTDA 144
>3n2l_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine
ribonucleotide biosynthesis, infectious diseases; 2.10A
{Vibrio cholerae}
Length = 238
Score = 36.4 bits (84), Expect = 0.002
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 30 VTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIA 72
+ G RV++VDD I GT + + L++ A + +A
Sbjct: 136 LVGSKLEGRVMLVDDVITAGTAIRESMELIQANKADLAGVLVA 178
>3s5j_B Ribose-phosphate pyrophosphokinase 1; nucleotide synthesis,
transferase; 2.02A {Homo sapiens} PDB: 2hcr_A* 3efh_A
2h06_A 2h07_A 2h08_A
Length = 326
Score = 36.0 bits (84), Expect = 0.002
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 30 VTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVH 68
+ G ++ + ++VDD T L AGA V+
Sbjct: 207 LVGDVKDRVAILVDDMADTCGTICHAADKLLSAGATRVY 245
>1vch_A Phosphoribosyltransferase-related protein; structural genomics,
riken structural genomics/proteomics initiative, RSGI;
1.94A {Thermus thermophilus} SCOP: c.61.1.1
Length = 175
Score = 35.5 bits (82), Expect = 0.003
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 34 LEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69
L +RVV+V D + G T + +++ AG V
Sbjct: 118 LLNQRVVLVSDVVASGETMRAMEKMVLRAGGHVVAR 153
>2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2;
phosphorylation, nucleotide biosynthesis, transferase;
2.55A {Homo sapiens} PDB: 2c4k_A*
Length = 379
Score = 35.8 bits (83), Expect = 0.003
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 30 VTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVH 68
V G + G+ ++VDD I + LKE GA ++
Sbjct: 266 VVGDVGGRIAIIVDDIIDDVDSFLAAAETLKERGAYKIF 304
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 34.4 bits (79), Expect = 0.003
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASP 74
G EG +V + + T S++++LLK G E+ M++ S
Sbjct: 61 GAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSL 103
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 34.0 bits (78), Expect = 0.005
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPP 75
G EG +V + + T S++++LLK G +EV M++ S
Sbjct: 53 GAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSLL 96
>1lh0_A OMP synthase; loop closure, monomer closure, orotate
phosphoribosyltransferase; HET: ORO PRP; 2.00A
{Salmonella typhimurium} SCOP: c.61.1.1 PDB: 1opr_A*
1sto_A* 1oro_A
Length = 213
Score = 34.8 bits (80), Expect = 0.007
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIA 72
G RV++VDD I GT + + +++ GA + I+
Sbjct: 113 GSALQGRVMLVDDVITAGTAIRESMEIIQAHGATLAGVLIS 153
>2aee_A OPRT, oprtase, orotate phosphoribosyltransferase; structural
genomics, PSI, structure initiative; 1.95A
{Streptococcus pyogenes} SCOP: c.61.1.1
Length = 211
Score = 34.7 bits (80), Expect = 0.007
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 33 VLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69
VL+G+++V+++D I G + GA + +
Sbjct: 114 VLKGQKMVIIEDLISTGGSVLDAAAAASREGADVLGV 150
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 34.0 bits (78), Expect = 0.008
Identities = 13/56 (23%), Positives = 27/56 (48%)
Query: 31 TGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDT 86
G+ G +V+ ++ G +S K ++LK+A +++ M I P + D+
Sbjct: 43 VGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDS 98
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 33.1 bits (76), Expect = 0.011
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSS 89
GVL ++ V+ V + ++V +K++G V + PSS
Sbjct: 49 GVLADDHLIEVNGENVEDASHEEVVEKVKKSG-SRVMFLLVDKETDKRHVEQKSGPSS 105
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 32.7 bits (75), Expect = 0.011
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSS 89
G+ VV V+ V +V ++++ G + + + A Y + PSS
Sbjct: 47 GLKNNDLVVAVNGKSVEALDHDGVVEMIRKGG-DQTTLLVLDKE--AESIYSLSGPSS 101
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 32.8 bits (75), Expect = 0.015
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPP 75
G R+V V++ + T+ ++ V +LK VH+ I S P
Sbjct: 65 PGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSGP 105
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 32.3 bits (74), Expect = 0.017
Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPP 75
G+ R++ V+ R +V L+ E+G ++ + I+ P
Sbjct: 49 GLKPYDRLLQVNHVRTRDFDCCLVVPLIAESG-NKLDLVISRNP 91
>3m3h_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine
ribonucleotide biosynthesis, structural genomics,
infectious diseases; 1.75A {Bacillus anthracis} PDB:
3osc_A*
Length = 234
Score = 32.8 bits (75), Expect = 0.024
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 36 GKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69
G++VVVV+D I G ++ V L+EAG + + +
Sbjct: 137 GQKVVVVEDLISTGGSAITCVEALREAGCEVLGI 170
>3dez_A OPRT, oprtase, orotate phosphoribosyltransferase;
glycosyltransferase, MAGN pyrimidine biosynthesis; 2.40A
{Streptococcus mutans}
Length = 243
Score = 32.1 bits (73), Expect = 0.051
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 33 VLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69
V +G+++V+++D I G + V + GA + +
Sbjct: 146 VTKGQKMVIIEDLISTGGSVLDAVAAAQREGADVLGV 182
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 30.7 bits (70), Expect = 0.054
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRI 71
G+L + ++ V G S+I +L +G V + I
Sbjct: 40 GLLTEHNICEINGQNVIGLKDSQIADILSTSG-TVVTITI 78
>1y0b_A Xanthine phosphoribosyltransferase; purine metabolism, STRU
genomics, PSI, protein structure initative, midwest
center structural genomics; HET: G4P; 1.80A {Bacillus
subtilis} SCOP: c.61.1.1 PDB: 2fxv_A*
Length = 197
Score = 31.9 bits (73), Expect = 0.057
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69
+ V+++DD + G + +V ++K+AGA +
Sbjct: 119 DQDHVLIIDDFLANGQAAHGLVSIVKQAGASIAGI 153
>1zn8_A APRT, adenine phosphoribosyltransferase; glycosyltransferase,
purine salvage; HET: AMP; 1.76A {Homo sapiens} SCOP:
c.61.1.1 PDB: 1ore_A* 1zn7_A* 1zn9_A*
Length = 180
Score = 31.7 bits (73), Expect = 0.057
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 33 VLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69
+ G+RVVVVDD + G T + LL A+ +
Sbjct: 117 LEPGQRVVVVDDLLATGGTMNAACELLGRLQAEVLEC 153
>2dy0_A APRT, adenine phosphoribosyltransferase; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 1.25A {Escherichia coli K12}
Length = 190
Score = 31.8 bits (73), Expect = 0.060
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 33 VLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69
+ G +V+VVDD + G T V+L++ G +
Sbjct: 123 IKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADA 159
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix
domain, phosphoribosyltranseferases, domain
recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE;
2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB:
1p4a_A*
Length = 291
Score = 31.9 bits (73), Expect = 0.065
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69
G V+++DD + G T + ++ LL E A +
Sbjct: 195 TGSNVLIIDDFMKAGGTINGMINLLDEFNANVAGI 229
>1z7g_A HGPRT, HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase;
flexibility, trans CIS peptide bond isomerization,
nucleotide binding; 1.90A {Homo sapiens} SCOP: c.61.1.1
PDB: 1hmp_A* 1bzy_A 3gep_A* 3ggc_A* 3ggj_A* 1d6n_A*
2vfa_A*
Length = 217
Score = 31.8 bits (73), Expect = 0.068
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 22 GVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIAS 73
+K+ L GK V++V+D I G T ++ L+++ K V ++AS
Sbjct: 112 DIKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMV--KVAS 161
>1g2q_A Adenine phosphoribosyltransferase 1; dimer, single domain,
catalytic loop; 1.50A {Saccharomyces cerevisiae} SCOP:
c.61.1.1 PDB: 1g2p_A
Length = 187
Score = 31.4 bits (72), Expect = 0.073
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 33 VLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69
+ G V++VDD I G +++ L+++ A +
Sbjct: 119 IPAGSNVIIVDDIIATGGSAAAAGELVEQLEANLLEY 155
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 31.7 bits (71), Expect = 0.074
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSSEE 91
G+ R+V V+ + G +V ++ G E + + PS E
Sbjct: 50 GLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG-DETKLLVVDRETDEFFKKCRVIPSQEH 108
Query: 92 L 92
L
Sbjct: 109 L 109
>3ozf_A Hypoxanthine-guanine-xanthine phosphoribosyltrans;
transferase-transferase inhibitor complex; HET: HPA;
1.94A {Plasmodium falciparum fcr-3} PDB: 3ozg_A* 1cjb_A*
Length = 250
Score = 31.5 bits (72), Expect = 0.081
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 34 LEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIAS 73
L+GK V++V+D I G T K LK+ K V IA
Sbjct: 154 LKGKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTV--AIAC 191
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 31.4 bits (71), Expect = 0.093
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPP 75
G + + + G L K A +V M + P
Sbjct: 157 RGDIITKFNGDALEGLPFQVCYALFKGAN-GKVSMEVTRPK 196
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1;
copper chaperone for superoxide dismutase, neuronal
adaptor, protein transport; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 90
Score = 30.1 bits (68), Expect = 0.093
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 31 TGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRI 71
GV G R++ ++ V T KIV +L A E+HM+
Sbjct: 47 GGVRVGHRIIEINGQSVVATPHEKIVHILSNAVG-EIHMKT 86
>1qb7_A APRT, adenine phosphoribosyltransferase; dinucleotide binding fold;
HET: ADE CIT; 1.50A {Leishmania donovani} SCOP: c.61.1.1
PDB: 1qb8_A* 1qcc_A* 1qcd_A 1mzv_A*
Length = 236
Score = 31.2 bits (71), Expect = 0.095
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 33 VLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69
+ +G RVV++DD + G T+ ++L++ + A V M
Sbjct: 135 IGKGSRVVLIDDVLATGGTALSGLQLVEASDAVVVEM 171
>1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia, purine
metabolism, cataly transferase; HET: 9DA; 1.85A {Giardia
intestinalis} SCOP: c.61.1.1 PDB: 1l1r_A*
Length = 186
Score = 31.0 bits (71), Expect = 0.100
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 33 VLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAK 65
+ V++ DD + G T + L + AG K
Sbjct: 114 LGPHDVVLLHDDVLATGGTLLAAIELCETAGVK 146
>3o7m_A Hypoxanthine phosphoribosyltransferase; hypoxanthine-guanine
phosphoribosyltransferase, salvage of nucleosides and
nucleotides; HET: GOL; 1.98A {Bacillus anthracis}
Length = 186
Score = 30.9 bits (71), Expect = 0.10
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 34 LEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69
+ GK V+VV+D I G T + K +
Sbjct: 92 ITGKNVIVVEDIIDSGLTLHFLKDHFFMHKPKALKF 127
>1fsg_A HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase;
glycosyltransferase, purine salvage; HET: PRP 9DG; 1.05A
{Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1qk3_A* 1qk4_A*
1qk5_A* 1dbr_A
Length = 233
Score = 31.1 bits (71), Expect = 0.11
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 34 LEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIAS 73
K V++V+D + G T ++ LK G K + RIA+
Sbjct: 140 FRDKHVLIVEDIVDTGFTLTEFGERLKAVGPKSM--RIAT 177
>3qw4_B UMP synthase; N-terminal orotidine monophosphate decarboxylase
domain C-TE orotate phosphoribosyltransferase domain,
transferase, LYAS; HET: U5P; 3.00A {Leishmania donovani}
Length = 453
Score = 31.3 bits (71), Expect = 0.11
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAK 65
+G RVV++DD + G T + + L+ AG +
Sbjct: 364 KGDRVVIIDDLVSTGETKVEAIEKLRSAGLE 394
>1hgx_A HGXPRTASE, hypoxanthine-guanine-xanthine phosphoribosyltransferase;
glycosyltransferase, purine salvage, transferase
(glycosyltransferase); HET: 5GP; 1.90A {Tritrichomonas
foetus} SCOP: c.61.1.1
Length = 183
Score = 30.5 bits (70), Expect = 0.13
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 34 LEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVH 68
+EG+ V+VV+D I G T +++ L+ +
Sbjct: 93 IEGRHVLVVEDIIDTGLTMYQLLNNLQMRKPASLK 127
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 29.6 bits (67), Expect = 0.14
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPP 75
G+ R+V V+ + G +V ++ G E + +
Sbjct: 50 GLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG-DETKLLVVDRE 92
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 29.5 bits (67), Expect = 0.14
Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPP 75
G+ G +++ V++ V+ + +V+L+ + +HM IA
Sbjct: 40 GLRAGDQILAVNEINVKKASHEDVVKLIGKCS-GVLHMVIAEGV 82
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain,
scaffolding protein, membrane, sensory transduction,
vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A
2qku_A
Length = 96
Score = 29.6 bits (67), Expect = 0.14
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPP 75
G + + + G L K A +V M + P
Sbjct: 52 RGDIITKFNGDALEGLPFQVSYALFKGAN-GKVSMEVTRPK 91
>1pzm_A HGPRT, hypoxanthine-guanine phosphoribosyltransferase; HET: 5GP;
2.10A {Leishmania tarentolae} SCOP: c.61.1.1
Length = 211
Score = 30.7 bits (70), Expect = 0.14
Identities = 5/35 (14%), Positives = 16/35 (45%)
Query: 34 LEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVH 68
+E + +++V+D + T ++R + +
Sbjct: 116 VENRHIMLVEDIVDSAITLQYLMRFMLAKKPASLK 150
>1dqn_A Guanine phosphoribosyltransferase; protein-inhibitor complex, Mg
IONS, pyrophosphate, transition state analogue; HET:
IMU; 1.75A {Giardia intestinalis} SCOP: c.61.1.1 PDB:
1dqp_A*
Length = 230
Score = 30.7 bits (70), Expect = 0.14
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 34 LEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVH 68
E + VV++D+ + G T I +K A
Sbjct: 116 KEKREVVLIDEYVDSGHTIFSIQEQIKHAKICSCF 150
>2ywu_A Hypoxanthine-guanine phosphoribosyltransferase; rossmann fold,
structural genomics, NPPSFA; HET: IMP; 1.89A {Thermus
thermophilus} PDB: 2ywt_A* 2yws_A* 3acb_A 3acc_A*
3acd_A*
Length = 181
Score = 30.5 bits (70), Expect = 0.15
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 34 LEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHM 69
+ G+ V+VV+D + G T S ++ L+ V +
Sbjct: 93 IHGRDVIVVEDIVDTGLTLSYLLDYLEARKPASVRV 128
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 29.5 bits (67), Expect = 0.15
Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPP 75
G+ + ++ V+ V K+V ++ +G K V + +
Sbjct: 44 GLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSG-KNVTLLVCGKK 86
>1tc1_A Protein (hypoxanthine phosphoribosyltransferase);
transferase,phosphoribosyltransferase, purine salvage,
nucleotide metabolism; HET: FMB MES; 1.41A {Trypanosoma
cruzi} SCOP: c.61.1.1 PDB: 1tc2_A* 1p19_A* 1p18_A*
1p17_A* 1i0l_A* 1i14_A* 1i0i_A* 1i13_A*
Length = 220
Score = 30.3 bits (69), Expect = 0.18
Identities = 6/35 (17%), Positives = 15/35 (42%)
Query: 34 LEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVH 68
+EG V++V+D + T + + + +
Sbjct: 101 IEGHHVLIVEDIVDTALTLNYLYHMYFTRRPASLK 135
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide;
peptide binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 29.7 bits (67), Expect = 0.19
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPP 75
G + + + G L K A +V M + P
Sbjct: 46 RGDIITKFNGDALEGLPFQVCYALFKGAN-GKVSMEVTRPK 85
>1yfz_A Hypoxanthine-guanine phosphoribosyltransferase; protein-nucleotide
complex; HET: IMP; 2.20A {Thermoanaerobacter
tengcongensis} SCOP: c.61.1.1 PDB: 1r3u_A*
Length = 205
Score = 30.2 bits (69), Expect = 0.19
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 34 LEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVH 68
+EGK V++V+D I G T + + L + +
Sbjct: 116 IEGKDVLIVEDIIDSGLTLAYLRETLLGRKPRSLK 150
>3hvu_A Hypoxanthine phosphoribosyltransferase; hypoxanthine-guanine
phosphoribosyltransferase, 2-(N-morphol ethanesulfonic
acid (MES), IDP01892; HET: MES; 1.95A {Bacillus
anthracis str} PDB: 3h83_A* 3kb8_A*
Length = 204
Score = 30.2 bits (69), Expect = 0.19
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 34 LEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVH 68
+EG+ +++V+D I G T S +V L K AK V
Sbjct: 114 VEGRDILIVEDIIDSGLTLSYLVDLFKYRKAKSVK 148
>2geb_A Hypoxanthine-guanine phosphoribosyltransferase; HGPRT, mutant,
inhibitor design, selectivity; 1.70A {Thermoanaerobacter
tengcongensis}
Length = 185
Score = 30.1 bits (69), Expect = 0.20
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 34 LEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVH 68
+EGK V++V+D I G T + + L + +
Sbjct: 96 IEGKDVLIVEDIIDSGLTLAYLRETLLGRKPRSLK 130
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 29.3 bits (66), Expect = 0.20
Identities = 4/44 (9%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPP 75
G+ + V+ +++ V ++ ++ + E+ + +
Sbjct: 53 GLQQLDTVLQLNERPVEHWKCVELAHEIRSCPS-EIILLVWRVS 95
>3ohp_A Hypoxanthine phosphoribosyltransferase; structural genomics, PSI-2,
protein structure initiative, NE SGX research center for
structural genomics; 2.04A {Vibrio cholerae} PDB:
1g9s_A* 1g9t_A* 1grv_A 1j7j_A
Length = 177
Score = 30.1 bits (69), Expect = 0.21
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 34 LEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVH 68
++GK V++V+D I G T +K+ +L K +
Sbjct: 89 IKGKDVLLVEDIIDTGNTLNKVKEILALREPKSIR 123
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism;
HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP:
e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Length = 370
Score = 30.4 bits (69), Expect = 0.22
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 1 MNTTRYEHETFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLK 60
M R FI P++ ++ V K++ + G + VV+ D IV IV LK
Sbjct: 1 MAAER----VFISPAKYVQGKNVITKIANYLEGI-GNKTVVIADEIVWKIAGHTIVNELK 55
Query: 61 EAG 63
+
Sbjct: 56 KGN 58
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces
pombe}
Length = 450
Score = 30.2 bits (68), Expect = 0.24
Identities = 12/54 (22%), Positives = 20/54 (37%)
Query: 10 TFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAG 63
F P + ++ + K VV+ D V ++KIV L + G
Sbjct: 65 IFTSPQKYVQGRHAFTRSYMYVKKWATKSAVVLADQNVWNICANKIVDSLSQNG 118
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling
protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 28.8 bits (65), Expect = 0.29
Identities = 10/39 (25%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 36 GKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASP 74
G R++ ++ VR +T ++ L+KEA ++ + I +
Sbjct: 59 GDRILSLNGKDVRNSTEQAVIDLIKEAD-FKIELEIQTF 96
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ
domain, protein, acetylation, cell projection, disease
mutation, membrane; NMR {Homo sapiens}
Length = 128
Score = 29.1 bits (65), Expect = 0.29
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPP 75
G+ R+V V+ + G +V ++ G E + +
Sbjct: 50 GLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG-DETKLLVVDRE 92
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 28.8 bits (65), Expect = 0.30
Identities = 8/41 (19%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPP 75
RV+ ++ ++ T ++++ +G + V++ IA P
Sbjct: 50 SNDRVLAINGHDLKYGTPELAAQIIQASG-ERVNLTIARPG 89
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A
2ocs_A
Length = 91
Score = 28.8 bits (65), Expect = 0.30
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASP 74
G+L G R+V V+ V T ++V ++ A V + + P
Sbjct: 44 GLLAGDRLVEVNGENVEKETHQQVVSRIRAAL-NAVRLLVVDP 85
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 28.8 bits (65), Expect = 0.31
Identities = 7/44 (15%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPP 75
G+ VV V+ V +V ++++ G + + +
Sbjct: 46 GLKNNDLVVAVNGKSVEALDHDGVVEMIRKGG-DQTTLLVLDKE 88
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 28.9 bits (65), Expect = 0.33
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 31 TGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPP 75
GV +G R++ V+ V G T ++V L++ KE+ + + S
Sbjct: 59 AGVRKGDRILEVNGVNVEGATHKQVVDLIRAGE-KELILTVLSVE 102
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 28.4 bits (64), Expect = 0.38
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASP 74
G+ R++ V+ V G +++V +K E + + P
Sbjct: 45 GLRAQDRLIEVNGQNVEGLRHAEVVASIKARE-DEARLLVVGP 86
>1nul_A XPRT, xanthine-guanine phosphoribosyltransferase; purine salvage
enzym; 1.80A {Escherichia coli} SCOP: c.61.1.1 PDB:
1a96_A* 1a95_A 1a98_A 1a97_A*
Length = 152
Score = 29.3 bits (66), Expect = 0.39
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 34 LEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSSE 90
+G+ +V+DD + G T+ I + +A + + A P++ Y VD P
Sbjct: 79 GDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRPLV--DDYVVDIPQDT 133
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 28.9 bits (65), Expect = 0.39
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPP 75
++V VD ++G + +V +L+ AG + VH+ +
Sbjct: 67 VNDKIVAVDGVNIQGFANHDVVEVLRNAG-QVVHLTLVRRK 106
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 28.1 bits (63), Expect = 0.45
Identities = 4/44 (9%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPP 75
G+ + V+ +++ V ++ ++ + E+ + +
Sbjct: 41 GLQQLDTVLQLNERPVEHWKCVELAHEIRSCPS-EIILLVWRMV 83
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda,
Ser/Thr protein phosphatase, ppase, manganese, sulfate,
viral protein; 2.15A {Enterobacteria phage lambda}
SCOP: d.159.1.3
Length = 221
Score = 29.0 bits (65), Expect = 0.50
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEV 67
+ ++ V D + RG + + + L+ + V
Sbjct: 40 KKDLLISVGDLVDRGAENVECLELITFPWFRAV 72
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70
kDa, Na/PI cotransporter C- terminal-associated
protein, NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 28.6 bits (64), Expect = 0.51
Identities = 10/44 (22%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPP 75
G+L+G RV+ ++ V +++V L++++G V + +
Sbjct: 55 GLLDGDRVLRINGVFVDKEEHAQVVELVRKSG-NSVTLLVLDGD 97
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium
rectale}
Length = 373
Score = 29.1 bits (65), Expect = 0.54
Identities = 16/113 (14%), Positives = 39/113 (34%), Gaps = 14/113 (12%)
Query: 35 EGKRVVVVD-------DSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDT- 86
GK+V ++ D + ++ + ++ +++ ++ + I GV
Sbjct: 171 MGKKVFYLNIEQCGTTDVFFQAEGNATMSDVIYSLKSRKANLLLKLESCIKQSQEGVSYF 230
Query: 87 -PSSEELISNRMSVEEIREFI----GCDSLAFLLIDSLNKMLGDDSQNFCYAC 134
+ L +S +I I G D+ +++D L L +
Sbjct: 231 SSTKVALDILEISYADIDTLIGNIQGMDNYDEIIVD-LPFSLEIEKLKLLSKA 282
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO
structural genomics, JCSG, protein structure
initiative, PS oxidoreductase; 1.50A {Thermotoga
maritima} SCOP: e.22.1.2
Length = 376
Score = 29.2 bits (66), Expect = 0.56
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 1/70 (1%)
Query: 10 TFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAK-EVH 68
T I P + ++ G L + VV+DD + + + ++
Sbjct: 16 TTIFPGRYVQGAGAINILEEELSRFGERAFVVIDDFVDKNVLGENFFSSFTKVRVNKQIF 75
Query: 69 MRIASPPIIA 78
S I
Sbjct: 76 GGECSDEEIE 85
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 28.4 bits (63), Expect = 0.57
Identities = 9/44 (20%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPP 75
G+ G R++ V+ V G T S+++ L++ + + + +
Sbjct: 78 GLCTGDRIIKVNGESVIGKTYSQVIALIQNSDT-TLELSVMPKD 120
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 28.1 bits (63), Expect = 0.61
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 36 GKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSS 89
G ++ + + V+G TS ++ ++L+ G V M +A P A PSS
Sbjct: 60 GDHILKIGGTNVQGMTSEQVAQVLRNCG-NSVRMLVARDP--AGDISVTSGPSS 110
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 27.7 bits (62), Expect = 0.64
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPP 75
G+ G R+V V V G + V ++ G V + + P
Sbjct: 47 GMQAGDRLVAVAGESVEGLGHEETVSRIQGQG-SCVSLTVVDPE 89
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 27.6 bits (62), Expect = 0.76
Identities = 9/42 (21%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 36 GKRVVVVDDSIVRGTTSSKIVRLLKEAGAK-EVHMRIASPPI 76
G ++ VD + V G + +V+L+++A + V++ + +
Sbjct: 49 GDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQTRL 90
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 27.9 bits (62), Expect = 0.85
Identities = 11/65 (16%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEA-GAKEVHM---RIASPPIIASCYYGVDTP 87
G+ +G + + V+ T ++V +LK+ +V + R P + G +
Sbjct: 49 GLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPPSPTKTAKMGSGSG 108
Query: 88 SSEEL 92
++
Sbjct: 109 QITKV 113
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 27.4 bits (61), Expect = 0.89
Identities = 7/41 (17%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 31 TGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRI 71
G+ G + ++ G T ++V L++ +G + +
Sbjct: 64 AGLQAGDVLANINGVSTEGFTYKQVVDLIRSSG-NLLTIET 103
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 27.3 bits (61), Expect = 0.98
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYY 82
G +++ VD + G + + L+ V + +A I +Y
Sbjct: 59 AGDQLLSVDGRSLVGLSQERAAELMTRTS-SVVTLEVAKQGAIRREWY 105
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural
genomics, JCSG, PSI, protein structure initiative; HET:
MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2
PDB: 1vhd_A*
Length = 371
Score = 28.3 bits (64), Expect = 1.0
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 6/69 (8%)
Query: 1 MNTTRYEHE-----TFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGT-TSSK 54
M + + H F P+ + K + +L + +VV S + +
Sbjct: 1 MGSDKIHHHHHHVWEFYMPTDVFFGEKILEKRGNIIDLLGKRALVVTGKSSSKKNGSLDD 60
Query: 55 IVRLLKEAG 63
+ +LL E
Sbjct: 61 LKKLLDETE 69
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG,
structural genomics, midwest center for structural
genomics, protein S initiative; 2.45A {Bacillus
halodurans}
Length = 165
Score = 28.1 bits (63), Expect = 1.1
Identities = 4/19 (21%), Positives = 13/19 (68%)
Query: 99 VEEIREFIGCDSLAFLLID 117
+++++ + D ++FLL+
Sbjct: 14 IDKLKLLVHFDRISFLLLA 32
>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase,
INHA, enoyl acyl carrier reductase, pyrrolid
carboxamide; HET: NAD 566; 1.62A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A*
2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A*
2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A*
3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...
Length = 269
Score = 28.0 bits (63), Expect = 1.1
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 9/39 (23%)
Query: 31 TGVLEGKRVVVV----DDSIVRGTTSSKIVRLLKEAGAK 65
TG+L+GKR++V D SI I R+ +E GA+
Sbjct: 2 TGLLDGKRILVSGIITDSSIAFH-----IARVAQEQGAQ 35
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI,
signaling protein; 1.80A {Mus musculus}
Length = 106
Score = 27.4 bits (61), Expect = 1.1
Identities = 10/44 (22%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPP 75
G+L+G RV+ ++ V +++V L++++G V + +
Sbjct: 43 GLLDGDRVLRINGVFVDKEEHAQVVELVRKSG-NSVTLLVLDGD 85
>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P
reductase, oxidoreductase; 2.60A {Eimeria tenella}
Length = 319
Score = 28.3 bits (63), Expect = 1.2
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 9/41 (21%)
Query: 29 PVTGVLEGKRVVVV----DDSIVRGTTSSKIVRLLKEAGAK 65
P+ L GK V + I +LL+ AGA+
Sbjct: 2 PLPVDLRGKTAFVAGVADSNGYGWA-----ICKLLRAAGAR 37
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 26.8 bits (60), Expect = 1.2
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASP 74
+G ++++V+ VR T + LLK + V + +
Sbjct: 50 QGDQILMVNGEDVRNATQEAVAALLKCSL-GTVTLEVGRI 88
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 27.4 bits (61), Expect = 1.2
Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 31 TGVL-EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPP 75
+G L G ++ +D + + + + +LL ++V + I P
Sbjct: 58 SGALHPGDHILSIDGTSMEHCSLLEATKLLASIS-EKVRLEILPVP 102
>1yif_A Beta-1,4-xylosidase; glycosidase, xylan, structural genomics, PSI,
protein structure initiative; 1.80A {Bacillus subtilis}
SCOP: b.29.1.23 b.67.2.1
Length = 533
Score = 28.3 bits (63), Expect = 1.3
Identities = 8/56 (14%), Positives = 20/56 (35%)
Query: 30 VTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVD 85
VT E R++ + + +++ K V++R+ +Y +
Sbjct: 422 VTHDEELGRILELTICDNFSFSQPLNNKIVIPREVKYVYLRVNIEKDKYYYFYSFN 477
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 27.0 bits (60), Expect = 1.3
Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPP 75
G+ G + ++ V G +V LL ++G ++ +R +
Sbjct: 51 GLRAGDLITHINGESVLGLVHMDVVELLLKSG-NKISLRTTALE 93
>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis,
3-dehydroquinase, structural genomi NPPSFA; 2.00A
{Geobacillus kaustophilus}
Length = 257
Score = 28.1 bits (62), Expect = 1.4
Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 10/62 (16%)
Query: 33 VLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSSEEL 92
+ + +VD + G + + R+ +E ++ S +Y TP E L
Sbjct: 109 ICRSGAIDLVDYELAYGERIADVRRMTEECSVW----------LVVSRHYFDGTPRKETL 158
Query: 93 IS 94
++
Sbjct: 159 LA 160
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A*
1mc7_A
Length = 108
Score = 27.0 bits (60), Expect = 1.4
Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKE--VHMRIASPP 75
G ++ V+D ++ VR+L++ K + + +A
Sbjct: 54 PGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSG 96
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 26.9 bits (60), Expect = 1.4
Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPP 75
G V+ ++ +G T ++ V ++ G ++H+ I P
Sbjct: 59 VGDLVLHINGESTQGLTHAQAVERIRAGG-PQLHLVIRRPL 98
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid,
structural genomics, seattle structural genomics center
for infectious disease; 2.35A {Brucella melitensis}
PDB: 4eit_A*
Length = 293
Score = 27.6 bits (62), Expect = 1.6
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 9/44 (20%)
Query: 26 KLSPVTGVLEGKRVVVV----DDSIVRGTTSSKIVRLLKEAGAK 65
++ +G+L+GKR +++ + SI G I + +EAGA+
Sbjct: 21 SMTAQSGLLQGKRGLILGVANNRSIAWG-----IAKAAREAGAE 59
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid
synthesis, rossmann-like fold, enoyl-ACP reductas
binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} PDB:
3oif_A* 2qio_A* 3oje_A 3ojf_A*
Length = 266
Score = 27.1 bits (61), Expect = 2.7
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 9/39 (23%)
Query: 31 TGVLEGKRVVVV----DDSIVRGTTSSKIVRLLKEAGAK 65
LEG+ +VV+ SI G I R L EAGA+
Sbjct: 2 NFSLEGRNIVVMGVANKRSIAWG-----IARSLHEAGAR 35
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG,
structural protein structure initiative, midwest center
for structural genomics; 2.10A {Bacillus halodurans}
Length = 201
Score = 26.6 bits (59), Expect = 2.9
Identities = 11/43 (25%), Positives = 13/43 (30%), Gaps = 16/43 (37%)
Query: 34 LEGKRVVVVDDSIVRGTTSS--------KIVRLLKEAGAKEVH 68
GK V G T S + L E GA +V
Sbjct: 5 FAGKHVGF-------GLTGSHCTYHEVLPQMERLVELGA-KVT 39
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding;
1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 26.1 bits (58), Expect = 2.9
Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 36 GKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPP 75
G R++ ++ S ++G S+ + LL+ AG + V ++I
Sbjct: 52 GDRILAINSSSLKGKPLSEAIHLLQMAG-ETVTLKIKKQT 90
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural
genomics, protein structure initiative; 2.40A
{Methanosarcina mazei GO1}
Length = 478
Score = 26.9 bits (60), Expect = 3.0
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 17/74 (22%)
Query: 7 EHETFIEPSQKIRDF-------GVKLKLSPVTGVLEGKRVVV--------VDDSIVRGTT 51
++ ++K+ DF L + ++G +V + DD R T
Sbjct: 317 GADSIYVLARKVNDFMPAHMYNLTVAALERLGKKMDGSKVAMLGWAFIKDSDD--ARNTP 374
Query: 52 SSKIVRLLKEAGAK 65
S L +AGA
Sbjct: 375 SEPYRDLCLKAGAS 388
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 26.1 bits (58), Expect = 3.1
Identities = 8/42 (19%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKE-VHMRIASPP 75
G R++ V+ + G + ++V LL+ + V + +
Sbjct: 60 AGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQE 101
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat
transcription; HET: PR3; 2.3A {Listeria monocytogenes}
SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Length = 238
Score = 26.6 bits (59), Expect = 3.4
Identities = 9/52 (17%), Positives = 21/52 (40%)
Query: 57 RLLKEAGAKEVHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFIGC 108
+ I S +I + YG +TP ++ + ++++E+ G
Sbjct: 130 AKFNDFSINGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGI 181
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha
structural genomics, joint center for structural
genomics; HET: MSE; 2.37A {Clostridium acetobutylicum
atcc 824}
Length = 354
Score = 26.7 bits (59), Expect = 3.4
Identities = 6/54 (11%), Positives = 13/54 (24%)
Query: 10 TFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAG 63
P + + KRV + + I + +K +
Sbjct: 8 RIAIPLILEVGNNKIYNIGQIIKKGNFKRVSLYFGEGIYELFGETIEKSIKSSN 61
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding;
1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 25.8 bits (57), Expect = 3.6
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRI 71
G+ G + V+ V G +IV ++K +G + +
Sbjct: 54 GLTPGDTIASVNGLNVEGIRHREIVDIIKASGN-VLRLET 92
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein
interaction, histidine kinase, response regulator,
phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB:
3kyi_B*
Length = 145
Score = 26.0 bits (58), Expect = 3.7
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 38 RVVVVDDS-IVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIA 78
V++VDD+ ++R I +K +V + A+ A
Sbjct: 15 NVMIVDDAAMMRLY----IASFIKTLPDFKV-VAQAANGQEA 51
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double
layers of alpha helices on TOP and bottom, hydrolase;
HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP:
c.117.1.1 PDB: 1m21_A*
Length = 503
Score = 26.8 bits (60), Expect = 3.8
Identities = 13/75 (17%), Positives = 30/75 (40%), Gaps = 8/75 (10%)
Query: 14 PSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVR----LLKEAGAKEVHM 69
P + + D+ +L L GKR+ ++ +++ ++ L+ AGA V +
Sbjct: 255 PGRAVYDYTARLDPQG----LRGKRIGLLQTPLLKYRGMPPLIEQAATELRRAGAVVVPV 310
Query: 70 RIASPPIIASCYYGV 84
+ + A +
Sbjct: 311 ELPNQGAWAEAERTL 325
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 25.7 bits (57), Expect = 4.0
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAK-EVHMRIA 72
G +V VD V G T ++ L+ A +V++ +
Sbjct: 55 PGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVR 93
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph
structural genomics, riken structural
genomics/proteomics initiative, RSGI; 1.30A {Thermus
thermophilus} PDB: 1wd7_A 1wcx_A
Length = 261
Score = 26.3 bits (58), Expect = 4.1
Identities = 6/45 (13%), Positives = 11/45 (24%), Gaps = 10/45 (22%)
Query: 34 LEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIA 78
+ RV L ++ G + P+ A
Sbjct: 6 EDAVRVAY-----AGLRRKEAFKALAEKLGFTPLLF-----PVQA 40
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 25.9 bits (57), Expect = 4.1
Identities = 6/51 (11%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Query: 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKE------VHMRIASPPIIAS 79
+++ V+ + G ++ + + L+ + + E + + I +S
Sbjct: 76 MNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSGPSS 126
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold,
NADH BI oxidoreductase; HET: NAD TCL; 2.10A
{Francisella tularensis subsp} PDB: 2jjy_A*
Length = 280
Score = 26.4 bits (59), Expect = 4.4
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 9/38 (23%)
Query: 32 GVLEGKRVVVV----DDSIVRGTTSSKIVRLLKEAGAK 65
G L GK++++ + SI G I + + GA+
Sbjct: 22 GFLAGKKILITGLLSNKSIAYG-----IAKAMHREGAE 54
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein
structure initiative, structural genomics; 2.50A
{Chlorobium tepidum tls}
Length = 177
Score = 25.9 bits (57), Expect = 4.8
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 99 VEEIREFIGCDSLAFLLIDS 118
+++R DS + ID
Sbjct: 29 TDKLRLLFAFDSAVIITIDR 48
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 25.8 bits (57), Expect = 4.8
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEV 67
G R++ V+ + G + ++V LL+ +
Sbjct: 79 AGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGT 111
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid,
oxidoreductase, structural genomics; 1.90A
{Burkholderia pseudomallei 1710B}
Length = 271
Score = 26.0 bits (58), Expect = 5.2
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 9/38 (23%)
Query: 32 GVLEGKRVVVV----DDSIVRGTTSSKIVRLLKEAGAK 65
G L+GKR+++ + SI G I + K GA+
Sbjct: 10 GFLDGKRILLTGLLSNRSIAYG-----IAKACKREGAE 42
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial
target, type II fatty acid biosynthesis,
enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A
{Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Length = 275
Score = 26.0 bits (58), Expect = 5.2
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 9/38 (23%)
Query: 32 GVLEGKRVVVV----DDSIVRGTTSSKIVRLLKEAGAK 65
G L+GK+ ++V + SI G I + GA
Sbjct: 2 GFLKGKKGLIVGVANNKSIAYG-----IAQSCFNQGAT 34
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 25.4 bits (56), Expect = 5.7
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIA 72
+++ VDD V+G S +V +L+ AG V + +
Sbjct: 65 PNDKILRVDDVNVQGMAQSDVVEVLRNAG-NPVRLLLI 101
>3uhj_A Probable glycerol dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Length = 387
Score = 25.9 bits (57), Expect = 5.9
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 10 TFIEPSQKIRDFGVKLKLSPVTGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVH 68
F P++ I+ G KL+ L GKR +V+ D ++ S +I + ++
Sbjct: 27 AFGGPNKYIQRAGEIDKLAAYLAPL-GKRALVLIDRVLFDALSERIGKSCGDSLDIRFE 84
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase,
oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia
coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A*
1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A*
1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Length = 265
Score = 26.0 bits (58), Expect = 6.0
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 9/38 (23%)
Query: 32 GVLEGKRVVVV----DDSIVRGTTSSKIVRLLKEAGAK 65
G L GKR++V SI G I + + GA+
Sbjct: 5 GFLSGKRILVTGVASKLSIAYG-----IAQAMHREGAE 37
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine
hydrolase; 2.40A {Salmonella typhimurium} SCOP:
c.23.1.1 c.40.1.1
Length = 349
Score = 25.9 bits (58), Expect = 6.0
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 38 RVVVVDDS-IVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIA 78
RV+ VDDS ++R + ++ E+ + A P++A
Sbjct: 5 RVLSVDDSALMRQI----MTEIINSHSDMEM-VATAPDPLVA 41
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 25.3 bits (56), Expect = 6.1
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 36 GKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPP 75
G +++ V+ +R + + LK AG + V + P
Sbjct: 57 GDQILSVNGVDLRNASHEQAAIALKNAG-QTVTIIAQYKP 95
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 25.5 bits (56), Expect = 6.1
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGA-KEVHMRIA--SPPIIASCYYGVDTPSS 89
G +V +++ V G T + +V+L + + V++ + P PSS
Sbjct: 65 TGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPLPFDPEDPANSGPSS 122
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 25.1 bits (55), Expect = 6.7
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 36 GKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPP 75
G R++ V+ + + IV+L+K+AG V +RI
Sbjct: 65 GDRILAVNGQSIINMPHADIVKLIKDAG-LSVTLRIIPQE 103
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L
homolog; PDZ domain, cellular signaling, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 25.2 bits (55), Expect = 6.8
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 31 TGVL-EGKRVVVVDDSIVRGTTSSKIVRLLKEAG 63
GVL G RV+ ++ +T + +LL+++
Sbjct: 61 CGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSS 94
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent
enoyl-ACP reductase, FABI, aquifex A VF5, structural
genomics, PSI; 2.00A {Aquifex aeolicus}
Length = 285
Score = 25.7 bits (57), Expect = 6.9
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 9/38 (23%)
Query: 32 GVLEGKRVVVV----DDSIVRGTTSSKIVRLLKEAGAK 65
G+LEGKR ++ + SI G I + GA+
Sbjct: 17 GLLEGKRALITGVANERSIAYG-----IAKSFHREGAQ 49
>2exh_A Beta-D-xylosidase; glykosidase, hydrolsase, family43, hydrolase;
HET: MES; 1.88A {Geobacillus stearothermophilus} SCOP:
b.29.1.23 b.67.2.1 PDB: 2exi_A* 2exj_A* 2exk_A*
Length = 535
Score = 26.0 bits (57), Expect = 7.1
Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 30 VTGVLEGKRVVVV---DDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVD 85
+T E R++ + D +V + + + + V++R+ Y D
Sbjct: 423 ITWHEEKGRILELMTCDHLVVDQPLRGREIVV--PDDIEYVYLRVTVQATTYKYSYSFD 479
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; structural genomi consortium, SGC,
ATP-binding, cell junction; 1.60A {Homo sapiens}
Length = 88
Score = 24.5 bits (54), Expect = 7.2
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKE 66
G+ EG +V V+ V+ T +++V +L E+
Sbjct: 42 GLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGS 76
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene
cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate;
HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Length = 764
Score = 26.0 bits (56), Expect = 7.2
Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 6/92 (6%)
Query: 69 MRIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFIGCDSLAFLLIDSLNKMLGDDSQ 128
+ + P + ++++ V SL++ L + + ++
Sbjct: 606 ISVGLGPCTLQPILLMGELVKDDVVE---KVHYPSNMFELVSLSWRLTNDTKTYQAEKAR 662
Query: 129 ---NFCYACFSGKYPVKPEEMKVKRVGEFVDD 157
AC+ P EE +K + VD
Sbjct: 663 GQQASGIACYMKDNPGATEEDAIKHICRVVDR 694
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 2.30A {Bacillus cereus}
Length = 207
Score = 25.5 bits (56), Expect = 7.3
Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 16/43 (37%)
Query: 34 LEGKRVVVVDDSIVRGTTSS--------KIVRLLKEAGAKEVH 68
L+GKR+ G T S + L GA EV
Sbjct: 3 LKGKRIGF-------GFTGSHCTYEEVMPHLEKLIAEGA-EVR 37
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase;
methionine, cobalamin, vitamin B12; 1.70A {Thermotoga
maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A
1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A
Length = 566
Score = 25.9 bits (58), Expect = 7.5
Identities = 5/22 (22%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 137 GKYPVKPEEMKVKRVGEFVDDG 158
YP+KP + + + + G
Sbjct: 245 TVYPLKPHDF-AVHIDSYYELG 265
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 25.3 bits (55), Expect = 7.7
Identities = 6/44 (13%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPP 75
G+ G ++ V+ V ++V ++++ G + +++
Sbjct: 82 GLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGG-NTLMVKVVMVT 124
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 113
Score = 25.0 bits (55), Expect = 7.8
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPP 75
G R++ V+ +R T + LK AG + V + P
Sbjct: 60 RGDRILSVNGVNLRNATHEQAAAALKRAG-QSVTIVAQYRP 99
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 24.8 bits (54), Expect = 8.0
Identities = 6/43 (13%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 31 TGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIAS 73
G+ G ++ V+ V ++V ++++ G + +++
Sbjct: 61 AGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGG-NTLMVKVVM 102
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal
transduction; 1.90A {Thermotoga maritima} SCOP:
c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Length = 120
Score = 24.8 bits (55), Expect = 9.0
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 5/29 (17%)
Query: 36 GKRVVVVDDS-IVRGTTSSKIVRLLKEAG 63
GKRV++VDD+ +R + ++ +AG
Sbjct: 2 GKRVLIVDDAAFMR----MMLKDIITKAG 26
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics, KIAA0705 protein; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 96
Score = 24.7 bits (54), Expect = 9.0
Identities = 10/41 (24%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 32 GVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGA-KEVHMRI 71
G+ EG +V ++ V+ + +++V +LK+ E + I
Sbjct: 47 GLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLII 87
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family,
oxdidative decarboxylation, cystein, lantibiotics,
mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP}
SCOP: c.34.1.1
Length = 194
Score = 25.3 bits (56), Expect = 9.3
Identities = 6/40 (15%), Positives = 16/40 (40%), Gaps = 9/40 (22%)
Query: 33 VLEGKRVVVVDDSIVRGTT----SSKIVRLLKEAGAKEVH 68
+L+ K++++ + G+ S + K E+
Sbjct: 5 ILKDKKLLI----GICGSISSVGISSYLLYFKSFFK-EIR 39
>1xkr_A Chemotaxis protein CHEC; signal transduction, protein phosphatase,
attractant; 1.75A {Thermotoga maritima} SCOP: d.252.1.1
PDB: 2f9z_A
Length = 206
Score = 25.3 bits (55), Expect = 9.3
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 92 LISNRMSVEEIREFIGCDSLAFLLIDSLNKML 123
+ + VEE E + + L K+
Sbjct: 168 FVETLLKVEEEEEPLTSYMMMIPKPGYLVKIF 199
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix,
chromosomal protein, nucleus, phosphoprotein, telomer
cycle, DNA-binding, protein binding; 1.95A {Homo
sapiens}
Length = 111
Score = 24.7 bits (53), Expect = 9.4
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 43 DDSIVRGTTSSKIVRLLKEAGAKEVHMRIA 72
DD ++ L+K+ GA+ V RI
Sbjct: 65 DDIDLQKDDEDTREALVKKFGAQNVARRIE 94
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 24.6 bits (54), Expect = 9.6
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 11/57 (19%)
Query: 35 EGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSSEE 91
+G RV+ V+ + G T + V L+ G + VH+ + +P+S+E
Sbjct: 63 KGDRVLAVNGVSLEGATHKQAVETLRNTG-QVVHLLLEKGQ----------SPTSKE 108
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural
genomics, PSI-2, protein structu initiative; HET: MSE
GOL; 1.90A {Vibrio fischeri}
Length = 141
Score = 24.8 bits (55), Expect = 9.7
Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Query: 52 SSKIVRLLKEAGAKEVHMRIASPP------IIASC-YYGVDT---PSSEELISNRMSVEE 101
+ RL+K+ V + + S II S V+ P+ ++L++ ++S+ +
Sbjct: 54 PKYLERLIKKHCISTVLLAVPSASQVQKKVIIESLAKLHVEVLTIPNLDDLVNGKLSIGQ 113
Query: 102 IRE 104
++E
Sbjct: 114 LKE 116
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate
methylesterase; CHEA, hydrolase; 1.90A {Thermotoga
maritima}
Length = 164
Score = 24.9 bits (55), Expect = 9.7
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 38 RVVVVDDS-IVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIA 78
RV+VVDDS +R + ++ +V + A + A
Sbjct: 27 RVLVVDDSAFMRMV----LKDIIDSQPDMKV-VGFAKDGLEA 63
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.389
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,465,838
Number of extensions: 146115
Number of successful extensions: 794
Number of sequences better than 10.0: 1
Number of HSP's gapped: 790
Number of HSP's successfully gapped: 169
Length of query: 158
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 72
Effective length of database: 4,300,587
Effective search space: 309642264
Effective search space used: 309642264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)