BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045549
(134 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 32/124 (25%)
Query: 38 DFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTI--------EIPWPIPETL 89
+F +L L +P + ++ + NN FT +IP + N S + + IP +L
Sbjct: 376 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 435
Query: 90 SKGSNLR------------------------TLNFNGNELVGSVPRSLLNCENLQVVDLG 125
S LR TL + N+L G +P L NC NL + L
Sbjct: 436 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 495
Query: 126 NNKI 129
NN++
Sbjct: 496 NNRL 499
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 22/141 (15%)
Query: 9 EVCRDIKI-QFGKNSFDG-IKKLPWKNLEYLDFRSNLLQGL---FLDPSSNMKVFL-ISN 62
C ++K+ N F G I LP K+L+YL N G FL + + L +S
Sbjct: 241 STCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 300
Query: 63 NRFTREIPCLIC------------NLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVP 110
N F +P N + E+P +TL K L+ L+ + NE G +P
Sbjct: 301 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPM---DTLLKMRGLKVLDLSFNEFSGELP 357
Query: 111 RSLLN-CENLQVVDLGNNKIE 130
SL N +L +DL +N
Sbjct: 358 ESLTNLSASLLTLDLSSNNFS 378
Score = 32.3 bits (72), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 50/127 (39%), Gaps = 31/127 (24%)
Query: 1 MLEEEVTQEVCRDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLI 60
MLE E+ QE+ +K L L++ D + GL +N+ +
Sbjct: 450 MLEGEIPQELMY-------------VKTLETLILDFNDLTGEIPSGL--SNCTNLNWISL 494
Query: 61 SNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQ 120
SNNR T EIP I L NL L + N G++P L +C +L
Sbjct: 495 SNNRLTGEIPKWIGRLE----------------NLAILKLSNNSFSGNIPAELGDCRSLI 538
Query: 121 VVDLGNN 127
+DL N
Sbjct: 539 WLDLNTN 545
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 47 LFLDPSSNMKVFLISNNRFTREIPCL-ICNLSTIEIPWPIPETLSKGSNLRTLNFNGNEL 105
+FLD S NM I + +P L I NL +I IP+ + L L+ + N+L
Sbjct: 632 MFLDMSYNMLSGYIP--KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 689
Query: 106 VGSVPRSLLNCENLQVVDLGNNKIE 130
G +P+++ L +DL NN +
Sbjct: 690 DGRIPQAMSALTMLTEIDLSNNNLS 714
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 63 NRFTREIPCLICNLSTIE--------IPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLL 114
N EIP + + T+E + IP LS +NL ++ + N L G +P+ +
Sbjct: 449 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 508
Query: 115 NCENLQVVDLGNNKIE 130
ENL ++ L NN
Sbjct: 509 RLENLAILKLSNNSFS 524
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 32/124 (25%)
Query: 38 DFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTI--------EIPWPIPETL 89
+F +L L +P + ++ + NN FT +IP + N S + + IP +L
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438
Query: 90 SKGSNLR------------------------TLNFNGNELVGSVPRSLLNCENLQVVDLG 125
S LR TL + N+L G +P L NC NL + L
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498
Query: 126 NNKI 129
NN++
Sbjct: 499 NNRL 502
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 22/141 (15%)
Query: 9 EVCRDIKI-QFGKNSFDG-IKKLPWKNLEYLDFRSNLLQGL---FLDPSSNMKVFL-ISN 62
C ++K+ N F G I LP K+L+YL N G FL + + L +S
Sbjct: 244 STCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 303
Query: 63 NRFTREIPCLIC------------NLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVP 110
N F +P N + E+P +TL K L+ L+ + NE G +P
Sbjct: 304 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPM---DTLLKMRGLKVLDLSFNEFSGELP 360
Query: 111 RSLLN-CENLQVVDLGNNKIE 130
SL N +L +DL +N
Sbjct: 361 ESLTNLSASLLTLDLSSNNFS 381
Score = 32.3 bits (72), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 50/127 (39%), Gaps = 31/127 (24%)
Query: 1 MLEEEVTQEVCRDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLI 60
MLE E+ QE+ +K L L++ D + GL +N+ +
Sbjct: 453 MLEGEIPQELMY-------------VKTLETLILDFNDLTGEIPSGL--SNCTNLNWISL 497
Query: 61 SNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQ 120
SNNR T EIP I L NL L + N G++P L +C +L
Sbjct: 498 SNNRLTGEIPKWIGRLE----------------NLAILKLSNNSFSGNIPAELGDCRSLI 541
Query: 121 VVDLGNN 127
+DL N
Sbjct: 542 WLDLNTN 548
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 47 LFLDPSSNMKVFLISNNRFTREIPCL-ICNLSTIEIPWPIPETLSKGSNLRTLNFNGNEL 105
+FLD S NM I + +P L I NL +I IP+ + L L+ + N+L
Sbjct: 635 MFLDMSYNMLSGYIP--KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
Query: 106 VGSVPRSLLNCENLQVVDLGNNKIE 130
G +P+++ L +DL NN +
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNLS 717
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 63 NRFTREIPCLICNLSTIE--------IPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLL 114
N EIP + + T+E + IP LS +NL ++ + N L G +P+ +
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511
Query: 115 NCENLQVVDLGNNKIE 130
ENL ++ L NN
Sbjct: 512 RLENLAILKLSNNSFS 527
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 32.3 bits (72), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 18/125 (14%)
Query: 22 SFDGIKKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIE- 80
+F G+ KL W NL+Y ++ L G+F D + + ++NN+ + +L+ ++
Sbjct: 54 TFRGLTKLTWLNLDYNQLQT-LSAGVF-DDLTELGTLGLANNQLASLPLGVFDHLTQLDK 111
Query: 81 ----------IPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLN-CENLQVVDLGNNKI 129
+P + + L+K L+ L N N+L S+P + NLQ + L N++
Sbjct: 112 LYLGGNQLKSLPSGVFDRLTK---LKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL 167
Query: 130 EDILH 134
+ + H
Sbjct: 168 QSVPH 172
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 32.0 bits (71), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 18/125 (14%)
Query: 22 SFDGIKKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIE- 80
+F G+ KL W NL+Y ++ L G+F D + + ++NN+ + +L+ ++
Sbjct: 54 TFRGLTKLTWLNLDYNQLQT-LSAGVF-DDLTELGTLGLANNQLASLPLGVFDHLTQLDK 111
Query: 81 ----------IPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLN-CENLQVVDLGNNKI 129
+P + + L+K L+ L N N+L S+P + NLQ + L N++
Sbjct: 112 LYLGGNQLKSLPSGVFDRLTK---LKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL 167
Query: 130 EDILH 134
+ + H
Sbjct: 168 QSVPH 172
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 63 NRFTREIPCLICNLSTIE--------IPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLL 114
N IP I L+ + + IP+ LS+ L TL+F+ N L G++P S+
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 115 NCENLQVVDLGNNKIEDIL 133
+ NL + N+I +
Sbjct: 147 SLPNLVGITFDGNRISGAI 165
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/97 (20%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 26 IKKLPWKNLEYLDFRSNLLQGL--FLDPSSNMKVFLISNNRFTREIPCLICNLSTI---- 79
+ LP+ N Y+ +NL+ + + + + I++ + IP + + T+
Sbjct: 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131
Query: 80 ----EIPWPIPETLSKGSNLRTLNFNGNELVGSVPRS 112
+ +P ++S NL + F+GN + G++P S
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 11/106 (10%)
Query: 33 NLEYLDFRSNLLQG----LFLDPSSNMKVFLISNN-RFTREIPCLICNLSTIE-----IP 82
NL ++D N+L+G LF + K+ L N+ F L NL+ ++ I
Sbjct: 198 NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY 257
Query: 83 WPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNK 128
+P+ L++ L +LN + N L G +P+ N + V NNK
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 22 SFDGIKKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCL--ICNLSTI 79
+F G+KKL + + + + + QGL P S ++ L N + L + NL+ +
Sbjct: 166 AFQGMKKLSYIRIADTNI-TTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKL 221
Query: 80 EIPWPIPETLSKGS-----NLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
+ + + GS +LR L+ N N+LV VP L + + +QVV L NN I I
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 278
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 22 SFDGIKKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCL--ICNLSTI 79
+F G+KKL + + + + + QGL P S ++ L N + L + NL+ +
Sbjct: 166 AFQGMKKLSYIRIADTNI-TTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKL 221
Query: 80 EIPWPIPETLSKGS-----NLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
+ + + GS +LR L+ N N+LV VP L + + +QVV L NN I I
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 278
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 22/116 (18%)
Query: 32 KNLEYLDFRSNLLQGLFLDPSS------NMKVFLISNNRF-----TREIPCLICNLSTIE 80
K+LE+LD NL+ +L S+ +++ ++S N T EI + NL++++
Sbjct: 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD 393
Query: 81 IP----WPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNC--ENLQVVDLGNNKIE 130
I P+P++ +R LN + + R + C + L+V+D+ NN ++
Sbjct: 394 ISRNTFHPMPDSCQWPEKMRFLNLSSTGI-----RVVKTCIPQTLEVLDVSNNNLD 444
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.4 bits (67), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 22/116 (18%)
Query: 32 KNLEYLDFRSNLLQGLFLDPSS------NMKVFLISNNRF-----TREIPCLICNLSTIE 80
K+LE+LD NL+ +L S+ +++ ++S N T EI + NL++++
Sbjct: 360 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD 419
Query: 81 IP----WPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNC--ENLQVVDLGNNKIE 130
I P+P++ +R LN + + R + C + L+V+D+ NN ++
Sbjct: 420 ISRNTFHPMPDSCQWPEKMRFLNLSSTGI-----RVVKTCIPQTLEVLDVSNNNLD 470
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 24/97 (24%)
Query: 60 ISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLL----- 114
I N F+R I + +L+ +I W +T L T+ GN L+ SL
Sbjct: 47 IQNTTFSRLINLIFLDLTRCQINWVHEDTFQSHHQLNTIVLTGNPLIFMAETSLTGPKFL 106
Query: 115 -------------------NCENLQVVDLGNNKIEDI 132
N ENL+ + LG+N I I
Sbjct: 107 KHLFLTQTGISNLEFIPVHNLENLESLHLGSNHISSI 143
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 17/102 (16%)
Query: 17 QFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLD---PSSNMKVFLISNNRFTREIPCLI 73
Q G ++ + I +NLE L SN + + L P+ N+KV NN
Sbjct: 113 QTGISNLEFIPVHNLENLESLHLGSNHISSINLPENFPTQNLKVLDFQNNAIHY------ 166
Query: 74 CNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLN 115
I +L + +NL +LNFNGN++ G P + ++
Sbjct: 167 -------ISRKDTNSLEQATNL-SLNFNGNDIKGIEPGAFIS 200
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 29.3 bits (64), Expect = 0.65, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 75 NLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
+LS ++I + I + K L L NGN L +P + N NL+V+DL +N++ +
Sbjct: 230 DLSNLQI-FNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSL 285
>pdb|3A24|A Chain A, Crystal Structure Of Bt1871 Retaining Glycosidase
pdb|3A24|B Chain B, Crystal Structure Of Bt1871 Retaining Glycosidase
Length = 641
Score = 28.9 bits (63), Expect = 0.83, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 49 LDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGS 93
L P N+K + +R T +I CN I P PI TL G+
Sbjct: 5 LSPDGNLKTTITIGDRLTYDI---TCNGRQILTPSPISMTLDNGT 46
>pdb|1FNH|A Chain A, Crystal Structure Of Heparin And Integrin Binding Segment
Of Human Fibronectin
Length = 271
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 38 DFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRT 97
D RS + GL P ++ K++L + N R P +I + I+ P SNLR
Sbjct: 144 DVRSYTITGL--QPGTDYKIYLYTLNDNARSSPVVIDASTAIDAP----------SNLRF 191
Query: 98 LNFNGNELVGS 108
L N L+ S
Sbjct: 192 LATTPNSLLVS 202
>pdb|3R8Q|A Chain A, Structure Of Fibronectin Domain 12-14
Length = 290
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 38 DFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRT 97
D RS + GL P ++ K++L + N R P +I + I+ P SNLR
Sbjct: 163 DVRSYTITGL--QPGTDYKIYLYTLNDNARSSPVVIDASTAIDAP----------SNLRF 210
Query: 98 LNFNGNELVGS 108
L N L+ S
Sbjct: 211 LATTPNSLLVS 221
>pdb|1NC5|A Chain A, Structure Of Protein Of Unknown Function Of Yter From
Bacillus Subtilis
pdb|2D8L|A Chain A, Crystal Structure Of Unsaturated Rhamnogalacturonyl
Hydrolase In Complex With Dglca-Galnac
Length = 373
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 1 MLEEEVTQEVCRDIKIQFGKNSFDGIKKLPWKNLE 35
+L+E + ++ +D K +++D KK+PW N E
Sbjct: 169 VLQESLMRKHTKDAKTGLFYHAWDEAKKMPWANEE 203
>pdb|2GH4|A Chain A, YterD143NDGALA-Rha
Length = 363
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 1 MLEEEVTQEVCRDIKIQFGKNSFDGIKKLPWKNLE 35
+L+E + ++ +D K +++D KK+PW N E
Sbjct: 159 VLQESLMRKHTKDAKTGLFYHAWDEAKKMPWANEE 193
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 24/97 (24%)
Query: 60 ISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSV------PRSL 113
I N F+R + +L+ +I W +T L TL GN L+ P+SL
Sbjct: 45 IHNRTFSRLMNLTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGNPLIFMAETSLNGPKSL 104
Query: 114 ------------------LNCENLQVVDLGNNKIEDI 132
N ENL+ + LG+N I I
Sbjct: 105 KHLFLIQTGISNLEFIPVHNLENLESLYLGSNHISSI 141
Score = 26.2 bits (56), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 93 SNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIE 130
S+L+TLN + NE +G ++ C L+++DL ++
Sbjct: 373 SHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLH 410
>pdb|1RKP|A Chain A, Crystal Structure Of Pde5a1-Ibmx
Length = 326
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 10/43 (23%)
Query: 59 LISNNRFTREIP----------CLICNLSTIEIPWPIPETLSK 91
LI N+F E P C+LS I PWPI + L++
Sbjct: 204 LIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQRLAE 246
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 18/100 (18%)
Query: 32 KNLEYLDFRSNLLQGLFLDPSS------NMKVFLISNNRF-----TREIPCLICNLSTIE 80
K+LEYLD NL+ +L S+ +++ ++ N T E + NL+ I+
Sbjct: 334 KSLEYLDLSENLMVEEYLKNSACEDAWPSLQTLILRQNHLASLEKTGETLLTLKNLTNID 393
Query: 81 IP----WPIPETLSKGSNLRTLNFNG---NELVGSVPRSL 113
I +PET ++ LN + + + G +P++L
Sbjct: 394 ISKNSFHSMPETCQWPEKMKYLNLSSTRIHSVTGCIPKTL 433
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 93 SNLRTLNFNGNELVGSVPRS-LLNCENLQVVDLGNNKIEDI 132
+NL LN NGN++ P S L+ NL + G NKI DI
Sbjct: 66 TNLEYLNLNGNQITDISPLSNLVKLTNLYI---GTNKITDI 103
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 19/117 (16%)
Query: 25 GIKKLP-----WKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTI 79
G+ +LP + LE L N L+ L P+S + S NR RE+ C T
Sbjct: 115 GLXELPDTXQQFAGLETLTLARNPLRAL---PAS-----IASLNRL-RELSIRACPELT- 164
Query: 80 EIPWPIPETLSKGSNLRTLNFNGNEL----VGSVPRSLLNCENLQVVDLGNNKIEDI 132
E+P P+ T + G + +N L + S+P S+ N +NL+ + + N+ + +
Sbjct: 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSAL 221
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 17/98 (17%)
Query: 16 IQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLD---PSSNMKVFLISNNRFTREIPCL 72
IQ G +S D I K LE L SN + + L P+ +KV NN
Sbjct: 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-------- 164
Query: 73 ICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVP 110
I LS ++ +L + +NL +LN NGN++ G P
Sbjct: 165 IHYLSKEDM-----SSLQQATNL-SLNLNGNDIAGIEP 196
>pdb|1XOZ|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a In Complex
With Tadalafil
pdb|1XP0|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a In Complex
With Vardenafil
Length = 364
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 10/43 (23%)
Query: 59 LISNNRFTREIP----------CLICNLSTIEIPWPIPETLSK 91
LI N+F E P C+LS I PWPI + +++
Sbjct: 227 LIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQRIAE 269
>pdb|1T9R|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a
Length = 366
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 10/43 (23%)
Query: 59 LISNNRFTREIP----------CLICNLSTIEIPWPIPETLSK 91
LI N+F E P C+LS I PWPI + +++
Sbjct: 229 LIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQRIAE 271
>pdb|1T9S|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a In Complex
With Gmp
pdb|1T9S|B Chain B, Catalytic Domain Of Human Phosphodiesterase 5a In Complex
With Gmp
pdb|1TBF|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a In Complex
With Sildenafil
Length = 347
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 10/43 (23%)
Query: 59 LISNNRFTREIP----------CLICNLSTIEIPWPIPETLSK 91
LI N+F E P C+LS I PWPI + +++
Sbjct: 227 LIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQRIAE 269
>pdb|3SHY|A Chain A, Crystal Structure Of The Pde5a1 Catalytic Domain In
Complex With Novel Inhibitors
pdb|3SHZ|A Chain A, Crystal Structure Of The Pde5a1 Catalytic Domain In
Complex With Novel Inhibitors
pdb|3SIE|A Chain A, Crystal Structure Of The Pde5a1 Catalytic Domain In
Complex With Novel Inhibitors
pdb|3SIE|B Chain B, Crystal Structure Of The Pde5a1 Catalytic Domain In
Complex With Novel Inhibitors
pdb|3TSE|A Chain A, Crystal Structure Of The Pde5a1 Catalytic Domain In
Complex With Novel Inhibitors
pdb|3TSF|A Chain A, Crystal Structure Of The Pde5a1 Catalytic Domain In
Complex With Novel Inhibitors
Length = 347
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 10/43 (23%)
Query: 59 LISNNRFTREIP----------CLICNLSTIEIPWPIPETLSK 91
LI N+F E P C+LS I PWPI + +++
Sbjct: 225 LIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQRIAE 267
>pdb|3B2R|A Chain A, Crystal Structure Of Pde5a1 Catalytic Domain In Complex
With Vardenafil
pdb|3B2R|B Chain B, Crystal Structure Of Pde5a1 Catalytic Domain In Complex
With Vardenafil
Length = 330
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 10/43 (23%)
Query: 59 LISNNRFTREIP----------CLICNLSTIEIPWPIPETLSK 91
LI N+F E P C+LS I PWPI + +++
Sbjct: 208 LIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQRIAE 250
>pdb|2CHM|A Chain A, Crystal Structure Of N2 Substituted Pyrazolo
Pyrimidinones- A Flipped Binding Mode In Pde5
pdb|3TGE|A Chain A, A Novel Series Of Potent And Selective Pde5 Inhibitor1
pdb|3TGG|A Chain A, A Novel Series Of Potent And Selective Pde5 Inhibitor2
Length = 326
Score = 26.2 bits (56), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 10/43 (23%)
Query: 59 LISNNRFTREIP----------CLICNLSTIEIPWPIPETLSK 91
LI N+F E P C+LS I PWPI + +++
Sbjct: 206 LIRKNQFNLEDPHEKELFLAMLMTACDLSAITKPWPIQQRIAE 248
>pdb|2H40|A Chain A, Crystal Structure Of The Catalytic Domain Of Unliganded
Pde5
pdb|2H42|A Chain A, Crystal Structure Of Pde5 In Complex With Sildenafil
pdb|2H42|B Chain B, Crystal Structure Of Pde5 In Complex With Sildenafil
pdb|2H42|C Chain C, Crystal Structure Of Pde5 In Complex With Sildenafil
pdb|2H44|A Chain A, Crystal Structure Of Pde5a1 In Complex With Icarisid Ii
Length = 326
Score = 26.2 bits (56), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 10/43 (23%)
Query: 59 LISNNRFTREIP----------CLICNLSTIEIPWPIPETLSK 91
LI N+F E P C+LS I PWPI + +++
Sbjct: 204 LIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQRIAE 246
>pdb|1UDT|A Chain A, Crystal Structure Of Human Phosphodiesterase 5 Complexed
With Sildenafil(Viagra)
pdb|1UDU|A Chain A, Crystal Structure Of Human Phosphodiesterase 5 Complexed
With Tadalafil(Cialis)
pdb|1UDU|B Chain B, Crystal Structure Of Human Phosphodiesterase 5 Complexed
With Tadalafil(Cialis)
pdb|1UHO|A Chain A, Crystal Structure Of Human Phosphodiesterase 5 Complexed
With Vardenafil(Levitra)
Length = 324
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 10/43 (23%)
Query: 59 LISNNRFTREIP----------CLICNLSTIEIPWPIPETLSK 91
LI N+F E P C+LS I PWPI + +++
Sbjct: 202 LIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQRIAE 244
>pdb|3BJC|A Chain A, Crystal Structure Of The Pde5a Catalytic Domain In Complex
With A Novel Inhibitor
Length = 878
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 10/43 (23%)
Query: 59 LISNNRFTREIP----------CLICNLSTIEIPWPIPETLSK 91
LI N+F E P C+LS I PWPI + +++
Sbjct: 741 LIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQRIAE 783
>pdb|3JWQ|A Chain A, Crystal Structure Of Chimeric Pde5/pde6 Catalytic Domain
Complexed With Sildenafil
pdb|3JWQ|B Chain B, Crystal Structure Of Chimeric Pde5/pde6 Catalytic Domain
Complexed With Sildenafil
pdb|3JWQ|C Chain C, Crystal Structure Of Chimeric Pde5/pde6 Catalytic Domain
Complexed With Sildenafil
pdb|3JWQ|D Chain D, Crystal Structure Of Chimeric Pde5/pde6 Catalytic Domain
Complexed With Sildenafil
pdb|3JWR|A Chain A, Crystal Structure Of Chimeric Pde5PDE6 CATALYTIC DOMAIN
Complexed With 3-Isobutyl-1-Methylxanthine (Ibmx) And
Pde6 Gamma-Subunit Inhibitory Peptide 70-87.
pdb|3JWR|B Chain B, Crystal Structure Of Chimeric Pde5PDE6 CATALYTIC DOMAIN
Complexed With 3-Isobutyl-1-Methylxanthine (Ibmx) And
Pde6 Gamma-Subunit Inhibitory Peptide 70-87
Length = 330
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 10/43 (23%)
Query: 59 LISNNRFTREIP----------CLICNLSTIEIPWPIPETLSK 91
LI N+F E P C+LS I PWPI + +++
Sbjct: 208 LIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQRIAE 250
>pdb|3HC8|A Chain A, Investigation Of Aminopyridiopyrazinones As Pde5
Inhibitors: Evaluation Of Modifications To The Central
Ring System.
pdb|3HDZ|A Chain A, Identification, Synthesis, And Sar Of Amino Substituted
Pyrido[3,2b]pryaziones As Potent And Selective Pde5
Inhibitors
Length = 324
Score = 26.2 bits (56), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 10/43 (23%)
Query: 59 LISNNRFTREIP----------CLICNLSTIEIPWPIPETLSK 91
LI N+F E P C+LS I PWPI + +++
Sbjct: 204 LIRKNQFNLEDPHEKELFLAMLMTACDLSAITKPWPIQQRIAE 246
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 98 LNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
L +GN+ VP+ L N ++L ++DL NN+I +
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTL 69
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 25.8 bits (55), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 86 PETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
PE K L+ LN NEL ++ C NL + L +N I+ I
Sbjct: 66 PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 112
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 25.8 bits (55), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 95 LRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
L+ LN NEL ++ + C NL +DL +N I I
Sbjct: 75 LKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKI 112
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 86 PETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
PE K L+ LN NEL ++ C NL + L +N I+ I
Sbjct: 71 PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 117
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 94 NLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
+L L N+L G P + ++Q + LG NKI++I
Sbjct: 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI 93
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 86 PETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
PE K L+ LN NEL ++ C NL + L +N I+ I
Sbjct: 76 PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,999,818
Number of Sequences: 62578
Number of extensions: 157368
Number of successful extensions: 525
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 448
Number of HSP's gapped (non-prelim): 94
length of query: 134
length of database: 14,973,337
effective HSP length: 88
effective length of query: 46
effective length of database: 9,466,473
effective search space: 435457758
effective search space used: 435457758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)