Query 045549
Match_columns 134
No_of_seqs 113 out of 3034
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 03:12:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045549.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045549hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.7 1.2E-17 2.7E-22 130.1 9.1 46 86-131 205-250 (968)
2 PLN00113 leucine-rich repeat r 99.7 6.6E-17 1.4E-21 126.0 9.3 128 7-134 89-229 (968)
3 KOG0617 Ras suppressor protein 99.5 8E-16 1.7E-20 97.0 -1.4 120 9-130 31-186 (264)
4 KOG0444 Cytoskeletal regulator 99.5 4.3E-15 9.2E-20 109.3 0.8 126 2-131 95-259 (1255)
5 KOG4194 Membrane glycoprotein 99.4 9E-14 2E-18 101.3 2.3 127 5-131 143-331 (873)
6 KOG4194 Membrane glycoprotein 99.4 2.2E-14 4.9E-19 104.4 -2.2 125 6-130 240-405 (873)
7 KOG0444 Cytoskeletal regulator 99.4 2.8E-14 6E-19 105.1 -3.1 118 8-127 219-372 (1255)
8 PRK15387 E3 ubiquitin-protein 99.3 4.3E-12 9.4E-17 96.6 6.6 76 53-133 382-461 (788)
9 PLN03150 hypothetical protein; 99.3 5.3E-12 1.2E-16 94.9 6.4 43 86-128 483-526 (623)
10 PLN03150 hypothetical protein; 99.3 1.4E-11 3.1E-16 92.6 7.9 86 33-134 419-507 (623)
11 KOG0472 Leucine-rich repeat pr 99.3 7.4E-13 1.6E-17 92.9 1.0 127 2-130 377-541 (565)
12 KOG0532 Leucine-rich repeat (L 99.2 1.5E-12 3.3E-17 94.5 -0.0 122 8-132 118-249 (722)
13 PRK15370 E3 ubiquitin-protein 99.2 4.8E-11 1E-15 91.0 7.1 113 12-131 242-381 (754)
14 KOG0618 Serine/threonine phosp 99.2 1.1E-12 2.3E-17 99.5 -1.7 118 9-128 357-487 (1081)
15 PF14580 LRR_9: Leucine-rich r 99.2 2.4E-11 5.2E-16 77.6 4.0 107 9-131 17-127 (175)
16 PF13855 LRR_8: Leucine rich r 99.2 4.2E-11 9.1E-16 63.8 4.1 61 53-129 1-61 (61)
17 PRK15387 E3 ubiquitin-protein 99.2 2.2E-10 4.7E-15 87.5 9.1 71 53-131 342-416 (788)
18 KOG0617 Ras suppressor protein 99.1 1.2E-12 2.5E-17 82.8 -3.6 97 32-129 33-139 (264)
19 KOG0472 Leucine-rich repeat pr 99.1 1.2E-12 2.6E-17 91.9 -4.4 119 12-132 138-290 (565)
20 PRK15370 E3 ubiquitin-protein 99.1 2.9E-10 6.3E-15 86.8 7.7 116 11-131 220-360 (754)
21 KOG1259 Nischarin, modulator o 99.1 5.7E-12 1.2E-16 85.9 -1.6 121 11-133 284-415 (490)
22 PF14580 LRR_9: Leucine-rich r 99.0 4.2E-10 9.2E-15 71.9 4.1 100 9-124 40-147 (175)
23 PF13855 LRR_8: Leucine rich r 99.0 1E-09 2.2E-14 58.4 3.6 52 12-63 2-59 (61)
24 PLN03210 Resistant to P. syrin 98.9 1.6E-08 3.4E-13 81.0 10.4 113 13-127 591-714 (1153)
25 PLN03210 Resistant to P. syrin 98.8 3.3E-08 7.2E-13 79.2 9.5 126 2-129 549-693 (1153)
26 KOG0618 Serine/threonine phosp 98.8 3.7E-10 8.1E-15 86.1 -2.1 123 6-130 305-465 (1081)
27 KOG4237 Extracellular matrix p 98.8 2.9E-10 6.3E-15 79.8 -2.7 124 5-129 60-200 (498)
28 COG4886 Leucine-rich repeat (L 98.8 8.2E-09 1.8E-13 73.8 3.8 122 9-133 161-293 (394)
29 cd00116 LRR_RI Leucine-rich re 98.7 1.7E-09 3.7E-14 74.9 0.2 123 9-131 79-235 (319)
30 PF12799 LRR_4: Leucine Rich r 98.6 7.1E-08 1.5E-12 47.8 3.5 39 93-132 1-39 (44)
31 COG4886 Leucine-rich repeat (L 98.6 3.2E-08 6.9E-13 70.8 2.3 119 12-132 141-270 (394)
32 KOG4237 Extracellular matrix p 98.5 7.9E-09 1.7E-13 72.8 -1.3 116 15-130 50-177 (498)
33 cd00116 LRR_RI Leucine-rich re 98.5 3.4E-08 7.4E-13 68.5 0.7 38 93-130 250-291 (319)
34 KOG0532 Leucine-rich repeat (L 98.5 8.8E-09 1.9E-13 75.5 -3.0 97 32-131 121-225 (722)
35 KOG1859 Leucine-rich repeat pr 98.4 2.7E-09 5.7E-14 80.2 -6.8 102 10-129 186-291 (1096)
36 KOG4579 Leucine-rich repeat (L 98.4 6.7E-09 1.5E-13 63.5 -4.4 99 12-128 28-134 (177)
37 KOG1644 U2-associated snRNP A' 98.3 1.9E-06 4E-11 56.0 5.6 99 12-126 43-149 (233)
38 KOG0531 Protein phosphatase 1, 98.3 2.9E-07 6.4E-12 66.5 1.4 104 8-130 92-199 (414)
39 KOG1859 Leucine-rich repeat pr 98.2 5.1E-08 1.1E-12 73.6 -4.3 102 12-132 165-269 (1096)
40 KOG1259 Nischarin, modulator o 98.2 5E-07 1.1E-11 62.3 0.4 96 31-130 283-387 (490)
41 PF12799 LRR_4: Leucine Rich r 98.1 2.7E-06 5.7E-11 42.1 2.5 34 12-45 2-37 (44)
42 KOG3207 Beta-tubulin folding c 98.1 2E-07 4.4E-12 66.5 -2.4 126 5-131 140-285 (505)
43 KOG4658 Apoptotic ATPase [Sign 98.1 2.6E-06 5.6E-11 66.7 3.0 117 11-127 523-652 (889)
44 PRK15386 type III secretion pr 98.0 2.5E-05 5.5E-10 56.2 6.4 113 9-127 50-187 (426)
45 KOG3207 Beta-tubulin folding c 98.0 1.8E-06 3.8E-11 61.8 0.0 41 6-46 167-211 (505)
46 KOG4579 Leucine-rich repeat (L 97.9 2.4E-07 5.3E-12 56.8 -4.2 84 10-111 52-140 (177)
47 KOG0531 Protein phosphatase 1, 97.9 3.4E-06 7.4E-11 61.0 0.6 124 7-131 114-269 (414)
48 KOG1909 Ran GTPase-activating 97.8 5.3E-06 1.2E-10 57.8 0.2 122 9-130 90-254 (382)
49 KOG1644 U2-associated snRNP A' 97.6 0.00017 3.6E-09 47.2 5.1 101 14-131 22-127 (233)
50 KOG3665 ZYG-1-like serine/thre 97.6 2.3E-05 4.9E-10 60.1 1.4 119 11-131 122-264 (699)
51 KOG4658 Apoptotic ATPase [Sign 97.6 3.4E-05 7.4E-10 60.6 2.1 114 10-124 544-675 (889)
52 COG5238 RNA1 Ran GTPase-activa 97.6 8.1E-05 1.8E-09 50.9 3.6 58 9-66 90-170 (388)
53 KOG2982 Uncharacterized conser 97.6 6.8E-05 1.5E-09 51.9 3.0 125 7-132 93-264 (418)
54 KOG1909 Ran GTPase-activating 97.1 0.00036 7.8E-09 49.0 2.6 121 9-129 155-310 (382)
55 PF00560 LRR_1: Leucine Rich R 97.1 0.00031 6.8E-09 29.2 1.4 19 55-74 2-20 (22)
56 KOG2123 Uncharacterized conser 96.9 2.6E-05 5.5E-10 53.4 -4.8 99 10-123 18-123 (388)
57 KOG2739 Leucine-rich acidic nu 96.8 0.00074 1.6E-08 45.6 2.0 32 32-63 43-75 (260)
58 PF00560 LRR_1: Leucine Rich R 96.7 0.00095 2E-08 27.7 1.1 22 94-116 1-22 (22)
59 PF13504 LRR_7: Leucine rich r 96.6 0.0014 3.1E-08 25.4 1.2 15 12-26 2-16 (17)
60 KOG2739 Leucine-rich acidic nu 96.6 0.0013 2.9E-08 44.4 1.8 101 8-124 40-150 (260)
61 KOG2123 Uncharacterized conser 96.5 3.9E-05 8.4E-10 52.6 -5.7 82 32-132 19-103 (388)
62 KOG2120 SCF ubiquitin ligase, 96.5 0.00016 3.4E-09 50.1 -2.9 96 6-101 255-371 (419)
63 PF13306 LRR_5: Leucine rich r 96.5 0.021 4.6E-07 34.2 6.5 59 2-62 3-67 (129)
64 KOG2120 SCF ubiquitin ligase, 96.4 8.8E-05 1.9E-09 51.3 -4.6 59 8-66 207-273 (419)
65 KOG2982 Uncharacterized conser 96.4 0.00099 2.1E-08 46.3 0.2 17 89-105 142-158 (418)
66 PRK15386 type III secretion pr 96.2 0.016 3.6E-07 42.2 5.5 61 12-76 73-137 (426)
67 smart00370 LRR Leucine-rich re 96.0 0.0067 1.4E-07 26.0 1.8 22 10-31 1-22 (26)
68 smart00369 LRR_TYP Leucine-ric 96.0 0.0067 1.4E-07 26.0 1.8 22 10-31 1-22 (26)
69 KOG3665 ZYG-1-like serine/thre 95.2 0.0068 1.5E-07 47.0 0.7 19 91-109 248-266 (699)
70 COG5238 RNA1 Ran GTPase-activa 94.5 0.0097 2.1E-07 41.1 -0.1 42 88-129 87-132 (388)
71 PF13516 LRR_6: Leucine Rich r 93.3 0.049 1.1E-06 22.7 1.0 15 117-131 2-16 (24)
72 smart00364 LRR_BAC Leucine-ric 92.5 0.1 2.2E-06 22.5 1.4 18 12-29 3-20 (26)
73 PF13306 LRR_5: Leucine rich r 91.8 0.5 1.1E-05 28.1 4.5 98 2-120 26-129 (129)
74 smart00365 LRR_SD22 Leucine-ri 90.5 0.29 6.3E-06 21.1 1.8 15 117-131 2-16 (26)
75 smart00368 LRR_RI Leucine rich 90.2 0.25 5.4E-06 21.5 1.5 14 117-130 2-15 (28)
76 KOG0473 Leucine-rich repeat pr 87.9 0.0086 1.9E-07 40.4 -5.8 80 32-129 42-123 (326)
77 KOG0473 Leucine-rich repeat pr 70.3 0.13 2.9E-06 34.9 -4.8 71 9-81 40-115 (326)
78 KOG3864 Uncharacterized conser 64.5 0.68 1.5E-05 30.7 -2.3 35 92-126 150-185 (221)
79 KOG3763 mRNA export factor TAP 59.6 6.4 0.00014 30.2 1.7 59 8-66 215-283 (585)
80 smart00367 LRR_CC Leucine-rich 57.1 8.1 0.00017 16.1 1.2 11 11-21 2-12 (26)
81 TIGR00864 PCC polycystin catio 37.3 24 0.00053 32.5 1.9 23 2-24 10-32 (2740)
82 KOG1947 Leucine rich repeat pr 30.5 15 0.00033 26.9 -0.2 57 9-65 241-307 (482)
83 TIGR00864 PCC polycystin catio 29.3 36 0.00078 31.6 1.7 29 38-66 1-32 (2740)
84 PF05725 FNIP: FNIP Repeat; I 25.2 91 0.002 14.7 3.0 8 32-39 12-19 (44)
85 smart00446 LRRcap occurring C- 24.7 27 0.00058 15.0 0.1 15 112-126 8-22 (26)
86 TIGR02167 Liste_lipo_26 bacter 22.4 44 0.00095 14.1 0.6 12 114-125 3-14 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.73 E-value=1.2e-17 Score=130.06 Aligned_cols=46 Identities=24% Similarity=0.377 Sum_probs=19.1
Q ss_pred CccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549 86 PETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 86 ~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
|..++.+++|+.|++++|.+.+.+|..++++++|+.|++++|.+++
T Consensus 205 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 250 (968)
T PLN00113 205 PRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG 250 (968)
T ss_pred ChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecc
Confidence 3333344444444444444443344444444444444444444433
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.70 E-value=6.6e-17 Score=126.05 Aligned_cols=128 Identities=27% Similarity=0.408 Sum_probs=114.4
Q ss_pred cccCCcccEEEcCCCccCC-CCcccc---cCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccc
Q 045549 7 TQEVCRDIKIQFGKNSFDG-IKKLPW---KNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEI 81 (134)
Q Consensus 7 ~~~~~~L~~L~l~~n~l~~-~~~~~~---~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~ 81 (134)
+..+++|+.|++++|.+.+ +|..++ .+|++|++++|.+++..|.. ++.|++|++++|.+++..|..++.+.+|+.
T Consensus 89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 168 (968)
T PLN00113 89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV 168 (968)
T ss_pred HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence 4578999999999999986 887654 89999999999999887776 899999999999999899999998888877
Q ss_pred --------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccCC
Q 045549 82 --------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDILH 134 (134)
Q Consensus 82 --------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~ 134 (134)
.+.+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+++.+|
T Consensus 169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 229 (968)
T PLN00113 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP 229 (968)
T ss_pred EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCC
Confidence 34678889999999999999999998899999999999999999999998765
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=8e-16 Score=96.97 Aligned_cols=120 Identities=19% Similarity=0.337 Sum_probs=78.7
Q ss_pred cCCcccEEEcCCCccCCCCcccc--cCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCccc---
Q 045549 9 EVCRDIKIQFGKNSFDGIKKLPW--KNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEI--- 81 (134)
Q Consensus 9 ~~~~L~~L~l~~n~l~~~~~~~~--~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--- 81 (134)
.+.+++.|.+++|.++-+|..+. .+++.|++.+|++....+.. ++.|+.|.++.|++. ..|..|+.++.|..
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL 109 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence 45566777777777776666653 67777777777776654443 666666666666666 66666665555443
Q ss_pred -----------------------------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccc
Q 045549 82 -----------------------------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIE 130 (134)
Q Consensus 82 -----------------------------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 130 (134)
...+|..++++++|++|.+..|.+- .+|..++.++.|++|++++|+++
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 2245666677777777777777666 66777777777777777777765
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.49 E-value=4.3e-15 Score=109.27 Aligned_cols=126 Identities=24% Similarity=0.331 Sum_probs=100.5
Q ss_pred ccccccccCCcccEEEcCCCccCCCCccc--ccCCcEEEccCcccCCcCCCC----CCCccEEEcccCccccccCccccC
Q 045549 2 LEEEVTQEVCRDIKIQFGKNSFDGIKKLP--WKNLEYLDFRSNLLQGLFLDP----SSNMKVFLISNNRFTREIPCLICN 75 (134)
Q Consensus 2 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~~~~~----l~~l~~L~l~~n~l~~~~~~~~~~ 75 (134)
||.++| .+..|+.|++++|+++.+|..+ ..++-+|++++|++.. +|.. ++.|-+||+++|+++ .+|+.+..
T Consensus 95 iP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Iet-IPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RR 171 (1255)
T KOG0444|consen 95 IPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIET-IPNSLFINLTDLLFLDLSNNRLE-MLPPQIRR 171 (1255)
T ss_pred CCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcccc-CCchHHHhhHhHhhhccccchhh-hcCHHHHH
Confidence 344444 5677888888888888888766 3778888888888775 4443 788999999999999 88888776
Q ss_pred CCCccc---------------------------------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEE
Q 045549 76 LSTIEI---------------------------------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVV 122 (134)
Q Consensus 76 l~~L~~---------------------------------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L 122 (134)
+.+|+. ...+|..+..+.+|..++++.|.+. ..|+++.++++|+.|
T Consensus 172 L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrL 250 (1255)
T KOG0444|consen 172 LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRL 250 (1255)
T ss_pred HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhhee
Confidence 666554 2356777778889999999999998 889999999999999
Q ss_pred EcCCCcccc
Q 045549 123 DLGNNKIED 131 (134)
Q Consensus 123 ~l~~n~l~~ 131 (134)
++++|.|+-
T Consensus 251 NLS~N~ite 259 (1255)
T KOG0444|consen 251 NLSGNKITE 259 (1255)
T ss_pred ccCcCceee
Confidence 999999863
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.40 E-value=9e-14 Score=101.32 Aligned_cols=127 Identities=20% Similarity=0.153 Sum_probs=75.3
Q ss_pred cccccCCcccEEEcCCCccCCCCcccc---cCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCC
Q 045549 5 EVTQEVCRDIKIQFGKNSFDGIKKLPW---KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLST 78 (134)
Q Consensus 5 ~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~ 78 (134)
+-.+.++.|+.|+|+.|.++.++...+ .++++|++++|+++...... +.+|.+|.|++|+++..-+..|+.+++
T Consensus 143 e~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~ 222 (873)
T KOG4194|consen 143 EELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPK 222 (873)
T ss_pred HHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcch
Confidence 334456666666676666666555443 55666666666666442222 445555556666655222233333443
Q ss_pred ccc--------------------------------------------------------cccCCccCcCCCCCcEEEccC
Q 045549 79 IEI--------------------------------------------------------PWPIPETLSKGSNLRTLNFNG 102 (134)
Q Consensus 79 L~~--------------------------------------------------------~~~~~~~~~~~~~L~~l~l~~ 102 (134)
|+. ......++.++++|++|++++
T Consensus 223 L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 223 LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch
Confidence 332 112233555677777888888
Q ss_pred CccccCccccccCCCCCcEEEcCCCcccc
Q 045549 103 NELVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 103 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
|.|....++.+..+++|++|+++.|+|+.
T Consensus 303 NaI~rih~d~WsftqkL~~LdLs~N~i~~ 331 (873)
T KOG4194|consen 303 NAIQRIHIDSWSFTQKLKELDLSSNRITR 331 (873)
T ss_pred hhhheeecchhhhcccceeEecccccccc
Confidence 88876667777777888888888887764
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.38 E-value=2.2e-14 Score=104.40 Aligned_cols=125 Identities=15% Similarity=0.148 Sum_probs=64.3
Q ss_pred ccccCCcccEEEcCCCccCCCCcccc---cCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCc
Q 045549 6 VTQEVCRDIKIQFGKNSFDGIKKLPW---KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTI 79 (134)
Q Consensus 6 ~~~~~~~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L 79 (134)
.|+++++++.|.+..|.+.++.+..| ..++.|+++.|++....-.. +++|++|++++|.+....++.+..+.+|
T Consensus 240 tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL 319 (873)
T KOG4194|consen 240 TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKL 319 (873)
T ss_pred hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccc
Confidence 45555555555555555555555432 55666666666655433222 5555666666665555555555544444
Q ss_pred cc-------cccC-------------------------CccCcCCCCCcEEEccCCccccCccc---cccCCCCCcEEEc
Q 045549 80 EI-------PWPI-------------------------PETLSKGSNLRTLNFNGNELVGSVPR---SLLNCENLQVVDL 124 (134)
Q Consensus 80 ~~-------~~~~-------------------------~~~~~~~~~L~~l~l~~n~l~~~~p~---~~~~l~~L~~L~l 124 (134)
+. ...+ ...|..+.+|+.|+|.+|.+.+.+-+ .|.++++|+.|++
T Consensus 320 ~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l 399 (873)
T KOG4194|consen 320 KELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRL 399 (873)
T ss_pred eeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheee
Confidence 44 0111 12334445555555555555543322 3455556666666
Q ss_pred CCCccc
Q 045549 125 GNNKIE 130 (134)
Q Consensus 125 ~~n~l~ 130 (134)
.||++.
T Consensus 400 ~gNqlk 405 (873)
T KOG4194|consen 400 TGNQLK 405 (873)
T ss_pred cCceee
Confidence 666554
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.35 E-value=2.8e-14 Score=105.10 Aligned_cols=118 Identities=22% Similarity=0.415 Sum_probs=79.9
Q ss_pred ccCCcccEEEcCCCccCCCCcccc--cCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCccc--
Q 045549 8 QEVCRDIKIQFGKNSFDGIKKLPW--KNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEI-- 81 (134)
Q Consensus 8 ~~~~~L~~L~l~~n~l~~~~~~~~--~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-- 81 (134)
+++.+|..++++.|++..+|+.++ ++|++|++++|.++.+.-.. ...+++|.++.|.++ .+|.+++++++|+.
T Consensus 219 d~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy 297 (1255)
T KOG0444|consen 219 DDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLY 297 (1255)
T ss_pred hhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHH
Confidence 345677778888888888888775 78888888888877653333 667777888888887 77777777776655
Q ss_pred -------ccc-----------------------CCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCC
Q 045549 82 -------PWP-----------------------IPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNN 127 (134)
Q Consensus 82 -------~~~-----------------------~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 127 (134)
... +|+.+.+|..|+.|.++.|++. .+|+.+.-++.|++||++.|
T Consensus 298 ~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 298 ANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred hccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCC
Confidence 122 3555555556666666666655 55666666666666666655
No 8
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.31 E-value=4.3e-12 Score=96.57 Aligned_cols=76 Identities=28% Similarity=0.441 Sum_probs=51.5
Q ss_pred CCccEEEcccCccccccCccccCCCCccc----cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCc
Q 045549 53 SNMKVFLISNNRFTREIPCLICNLSTIEI----PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNK 128 (134)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 128 (134)
.+|+.|++++|.++ .+|.....+..|.. ...+|.. ..+|+.|++++|+++ .+|..++++++|..+++++|.
T Consensus 382 ~~L~~LdLs~N~Lt-~LP~l~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 382 SGLKELIVSGNRLT-SLPVLPSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred cccceEEecCCccc-CCCCcccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCC
Confidence 35666666666666 34444433433333 2233432 245677888889888 789999999999999999999
Q ss_pred ccccC
Q 045549 129 IEDIL 133 (134)
Q Consensus 129 l~~~~ 133 (134)
++|.+
T Consensus 457 Ls~~~ 461 (788)
T PRK15387 457 LSERT 461 (788)
T ss_pred CCchH
Confidence 99864
No 9
>PLN03150 hypothetical protein; Provisional
Probab=99.30 E-value=5.3e-12 Score=94.86 Aligned_cols=43 Identities=37% Similarity=0.554 Sum_probs=24.0
Q ss_pred CccCcCCCCCcEEEccCCccccCccccccCC-CCCcEEEcCCCc
Q 045549 86 PETLSKGSNLRTLNFNGNELVGSVPRSLLNC-ENLQVVDLGNNK 128 (134)
Q Consensus 86 ~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l-~~L~~L~l~~n~ 128 (134)
|..++.+++|+.|++++|.+.|.+|..++.. .++..+++.+|.
T Consensus 483 P~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred chHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 4444555666666666666666666655543 244555555554
No 10
>PLN03150 hypothetical protein; Provisional
Probab=99.28 E-value=1.4e-11 Score=92.60 Aligned_cols=86 Identities=22% Similarity=0.382 Sum_probs=72.4
Q ss_pred CCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccccccCCccCcCCCCCcEEEccCCccccCc
Q 045549 33 NLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSV 109 (134)
Q Consensus 33 ~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~ 109 (134)
.++.|++++|.+++..|.. ++.|+.|++++|.+.+.+ |..++.+++|+.|++++|.+.|.+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~i----------------P~~~~~l~~L~~LdLs~N~lsg~i 482 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNI----------------PPSLGSITSLEVLDLSYNSFNGSI 482 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcC----------------ChHHhCCCCCCEEECCCCCCCCCC
Confidence 3677889999988877765 788999999999888543 445667788999999999999889
Q ss_pred cccccCCCCCcEEEcCCCcccccCC
Q 045549 110 PRSLLNCENLQVVDLGNNKIEDILH 134 (134)
Q Consensus 110 p~~~~~l~~L~~L~l~~n~l~~~~~ 134 (134)
|+.++.+++|+.|++++|.++|.+|
T Consensus 483 P~~l~~L~~L~~L~Ls~N~l~g~iP 507 (623)
T PLN03150 483 PESLGQLTSLRILNLNGNSLSGRVP 507 (623)
T ss_pred chHHhcCCCCCEEECcCCcccccCC
Confidence 9999999999999999999998876
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.28 E-value=7.4e-13 Score=92.94 Aligned_cols=127 Identities=28% Similarity=0.404 Sum_probs=91.0
Q ss_pred ccccccccCC--cccEEEcCCCccCCCCccc--------------------------ccCCcEEEccCcccCCcCCCC--
Q 045549 2 LEEEVTQEVC--RDIKIQFGKNSFDGIKKLP--------------------------WKNLEYLDFRSNLLQGLFLDP-- 51 (134)
Q Consensus 2 ~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~--------------------------~~~L~~L~l~~n~l~~~~~~~-- 51 (134)
+|.|+|+... -++.++++.|++.++|+.. ++++..|++++|.+-...-..
T Consensus 377 VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~ 456 (565)
T KOG0472|consen 377 VPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGS 456 (565)
T ss_pred CCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhh
Confidence 4556665443 4666788888877766533 156677777777665432222
Q ss_pred CCCccEEEcccCccccccCccccCCCCccc-------cccC-CccCcCCCCCcEEEccCCccccCccccccCCCCCcEEE
Q 045549 52 SSNMKVFLISNNRFTREIPCLICNLSTIEI-------PWPI-PETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVD 123 (134)
Q Consensus 52 l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-------~~~~-~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ 123 (134)
+..||.++++.|+|. .+|..+..+..+.. .+.+ +.++..|.+|..|++.+|.+. .+|..+++|++|+.|.
T Consensus 457 lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLe 534 (565)
T KOG0472|consen 457 LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLE 534 (565)
T ss_pred hhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEE
Confidence 556888888888777 67766555444433 2333 445889999999999999999 8899999999999999
Q ss_pred cCCCccc
Q 045549 124 LGNNKIE 130 (134)
Q Consensus 124 l~~n~l~ 130 (134)
+.||.|.
T Consensus 535 L~gNpfr 541 (565)
T KOG0472|consen 535 LDGNPFR 541 (565)
T ss_pred ecCCccC
Confidence 9999986
No 12
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.22 E-value=1.5e-12 Score=94.53 Aligned_cols=122 Identities=20% Similarity=0.234 Sum_probs=102.0
Q ss_pred ccCCcccEEEcCCCccCCCCcccc-cCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCccc---
Q 045549 8 QEVCRDIKIQFGKNSFDGIKKLPW-KNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEI--- 81 (134)
Q Consensus 8 ~~~~~L~~L~l~~n~l~~~~~~~~-~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--- 81 (134)
.++..|++++++.|++..+|..+| .-|+.|.+++|+++...... ...+..||.+.|.+. .+|..++.+.+|..
T Consensus 118 ~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~v 196 (722)
T KOG0532|consen 118 CNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNV 196 (722)
T ss_pred hhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHH
Confidence 456778889999999988888776 66899999999988654444 778889999999988 88888888887776
Q ss_pred ----cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549 82 ----PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132 (134)
Q Consensus 82 ----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 132 (134)
...+|+++.. -.|..||+++|++. .+|-.|.+|++|++|-|++|.++++
T Consensus 197 rRn~l~~lp~El~~-LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 197 RRNHLEDLPEELCS-LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred hhhhhhhCCHHHhC-CceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence 4467888874 45888999999999 8999999999999999999999764
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.20 E-value=4.8e-11 Score=91.00 Aligned_cols=113 Identities=18% Similarity=0.331 Sum_probs=66.2
Q ss_pred cccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCcccc----------------
Q 045549 12 RDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLIC---------------- 74 (134)
Q Consensus 12 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~---------------- 74 (134)
.|+.|++++|.+..+|..+..+|+.|++++|+++.+ |.. ..+|++|++++|+++ .+|..+.
T Consensus 242 ~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~~L-P~~l~~sL~~L~Ls~N~Lt-~LP~~lp~sL~~L~Ls~N~Lt~L 319 (754)
T PRK15370 242 TIQEMELSINRITELPERLPSALQSLDLFHNKISCL-PENLPEELRYLSVYDNSIR-TLPAHLPSGITHLNVQSNSLTAL 319 (754)
T ss_pred cccEEECcCCccCcCChhHhCCCCEEECcCCccCcc-ccccCCCCcEEECCCCccc-cCcccchhhHHHHHhcCCccccC
Confidence 567777777777767766656677777777777643 333 456777777777666 3343221
Q ss_pred ------CCCCccc----cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549 75 ------NLSTIEI----PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 75 ------~l~~L~~----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
.+..|.. ...+|..+ .++|+.|++++|.++ .+|..+. ++|+.|++++|.++.
T Consensus 320 P~~l~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~ 381 (754)
T PRK15370 320 PETLPPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN 381 (754)
T ss_pred CccccccceeccccCCccccCChhh--cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC
Confidence 1111111 11233322 246777777777776 5565442 467777777777764
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.20 E-value=1.1e-12 Score=99.48 Aligned_cols=118 Identities=21% Similarity=0.319 Sum_probs=96.3
Q ss_pred cCCcccEEEcCCCccCC--CCccc-ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc-
Q 045549 9 EVCRDIKIQFGKNSFDG--IKKLP-WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI- 81 (134)
Q Consensus 9 ~~~~L~~L~l~~n~l~~--~~~~~-~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~- 81 (134)
.++.|+.|++.+|.+++ +|... +++|+.|++++|++..+.... +..|+.|++++|++. .+|..+.+|..|+.
T Consensus 357 ~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL 435 (1081)
T KOG0618|consen 357 NHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTL 435 (1081)
T ss_pred hhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHH
Confidence 45688889999999987 67665 499999999999988654444 778999999999999 89999999988887
Q ss_pred ------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCc
Q 045549 82 ------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNK 128 (134)
Q Consensus 82 ------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 128 (134)
....| ++..+++|+.+|++.|.+....-..-...++|++||++||.
T Consensus 436 ~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 436 RAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 34567 78889999999999999985433222333899999999996
No 15
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.18 E-value=2.4e-11 Score=77.63 Aligned_cols=107 Identities=23% Similarity=0.277 Sum_probs=36.2
Q ss_pred cCCcccEEEcCCCccCCCCccc--ccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccccccC
Q 045549 9 EVCRDIKIQFGKNSFDGIKKLP--WKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEIPWPI 85 (134)
Q Consensus 9 ~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~ 85 (134)
+...++.|++++|.++.+...- ..+++.|++++|.++.+..-. ++.|++|++++|+++ .+...+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~-~i~~~l------------ 83 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRIS-SISEGL------------ 83 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS----S-CHHH------------
T ss_pred cccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCC-ccccch------------
Confidence 3446888999999998765432 378999999999998765444 899999999999998 332111
Q ss_pred CccCcCCCCCcEEEccCCccccCc-cccccCCCCCcEEEcCCCcccc
Q 045549 86 PETLSKGSNLRTLNFNGNELVGSV-PRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 86 ~~~~~~~~~L~~l~l~~n~l~~~~-p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
...+++|+.|++++|++...- -..+..+++|+.|++.+|.++.
T Consensus 84 ---~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 84 ---DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp ---HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred ---HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 123577778888888776321 1346677778888888887754
No 16
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.17 E-value=4.2e-11 Score=63.78 Aligned_cols=61 Identities=39% Similarity=0.651 Sum_probs=50.8
Q ss_pred CCccEEEcccCccccccCccccCCCCccccccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcc
Q 045549 53 SNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKI 129 (134)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 129 (134)
++|++|++++|+++ .+| +..|..+++|+.+++++|.++..-+..|.++++|+.+++++|+|
T Consensus 1 p~L~~L~l~~n~l~-~i~---------------~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLT-EIP---------------PDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTES-EEC---------------TTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCC-ccC---------------HHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46888999999888 444 45778889999999999999855566899999999999999975
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.16 E-value=2.2e-10 Score=87.50 Aligned_cols=71 Identities=24% Similarity=0.382 Sum_probs=42.2
Q ss_pred CCccEEEcccCccccccCccccCCCCccc----cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCc
Q 045549 53 SNMKVFLISNNRFTREIPCLICNLSTIEI----PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNK 128 (134)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 128 (134)
.+|++|++++|+++ .+|.....+..|.. ...+|.. ..+|+.|++++|.++ .+|.. .++|+.|++++|.
T Consensus 342 ~~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~ 413 (788)
T PRK15387 342 SGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNR 413 (788)
T ss_pred cccceEecCCCccC-CCCCCCcccceehhhccccccCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCc
Confidence 46888888888887 55654444444433 2233432 245677777777777 45543 2456666777766
Q ss_pred ccc
Q 045549 129 IED 131 (134)
Q Consensus 129 l~~ 131 (134)
+++
T Consensus 414 Lss 416 (788)
T PRK15387 414 LTS 416 (788)
T ss_pred CCC
Confidence 654
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.13 E-value=1.2e-12 Score=82.83 Aligned_cols=97 Identities=26% Similarity=0.376 Sum_probs=77.3
Q ss_pred cCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCccc-------cccCCccCcCCCCCcEEEccC
Q 045549 32 KNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEI-------PWPIPETLSKGSNLRTLNFNG 102 (134)
Q Consensus 32 ~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-------~~~~~~~~~~~~~L~~l~l~~ 102 (134)
.++++|-++.|+++...|.. +.+|++|.+.+|.++ ..|.++..+.+|+. ...+|.+||.++.|+.|++.+
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccc
Confidence 78899999999999887776 999999999999999 99999998888887 567899999999999998888
Q ss_pred Ccccc-CccccccCCCCCcEEEcCCCcc
Q 045549 103 NELVG-SVPRSLLNCENLQVVDLGNNKI 129 (134)
Q Consensus 103 n~l~~-~~p~~~~~l~~L~~L~l~~n~l 129 (134)
|.+.. .+|..|.++..|+.|++++|.+
T Consensus 112 nnl~e~~lpgnff~m~tlralyl~dndf 139 (264)
T KOG0617|consen 112 NNLNENSLPGNFFYMTTLRALYLGDNDF 139 (264)
T ss_pred cccccccCCcchhHHHHHHHHHhcCCCc
Confidence 77742 2455555555555555555444
No 19
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.12 E-value=1.2e-12 Score=91.89 Aligned_cols=119 Identities=21% Similarity=0.263 Sum_probs=66.3
Q ss_pred cccEEEcCCCccCCCCcccc--cCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCccc------
Q 045549 12 RDIKIQFGKNSFDGIKKLPW--KNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEI------ 81 (134)
Q Consensus 12 ~L~~L~l~~n~l~~~~~~~~--~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~------ 81 (134)
.+..++..+|++..+|.+++ .++..+++.+|.++...+.. |+.|+++|...|-++ .+|+.++.+.+|..
T Consensus 138 ~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~N 216 (565)
T KOG0472|consen 138 DLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRN 216 (565)
T ss_pred hhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhc
Confidence 34445555555555555432 44455555555555444433 445555555555444 44444444443322
Q ss_pred -----------------------cccCCccCc-CCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549 82 -----------------------PWPIPETLS-KGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132 (134)
Q Consensus 82 -----------------------~~~~~~~~~-~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 132 (134)
...+|.+.. ++.++..|++..|++. +.|+.++-+++|..||+++|.|++.
T Consensus 217 ki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~L 290 (565)
T KOG0472|consen 217 KIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSL 290 (565)
T ss_pred ccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccC
Confidence 123344443 5667777777777777 6677777777777777777777654
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.11 E-value=2.9e-10 Score=86.83 Aligned_cols=116 Identities=22% Similarity=0.288 Sum_probs=82.4
Q ss_pred CcccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCcccc-CCCCccc----ccc
Q 045549 11 CRDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLIC-NLSTIEI----PWP 84 (134)
Q Consensus 11 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~-~l~~L~~----~~~ 84 (134)
++|+.|++++|.++.+|..+..+++.|++++|.++.+ |.. ...|+.|++++|+++ .+|..+. .+..|.. ...
T Consensus 220 ~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~~L-P~~l~s~L~~L~Ls~N~L~-~LP~~l~~sL~~L~Ls~N~Lt~ 297 (754)
T PRK15370 220 GNIKTLYANSNQLTSIPATLPDTIQEMELSINRITEL-PERLPSALQSLDLFHNKIS-CLPENLPEELRYLSVYDNSIRT 297 (754)
T ss_pred cCCCEEECCCCccccCChhhhccccEEECcCCccCcC-ChhHhCCCCEEECcCCccC-ccccccCCCCcEEECCCCcccc
Confidence 4899999999999999988778999999999999864 444 668999999999998 6676553 3333332 112
Q ss_pred CCccCc-------------------CCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549 85 IPETLS-------------------KGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 85 ~~~~~~-------------------~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
+|..+. ..++|+.|++++|.++ .+|..+. ++|+.|++++|+|+.
T Consensus 298 LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~~ 360 (754)
T PRK15370 298 LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQITV 360 (754)
T ss_pred CcccchhhHHHHHhcCCccccCCccccccceeccccCCccc-cCChhhc--CcccEEECCCCCCCc
Confidence 222111 1245677777777777 4565443 578888998888863
No 21
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.10 E-value=5.7e-12 Score=85.95 Aligned_cols=121 Identities=16% Similarity=0.165 Sum_probs=93.3
Q ss_pred CcccEEEcCCCccCCCCccc--ccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCcc---ccCCCCccccc-
Q 045549 11 CRDIKIQFGKNSFDGIKKLP--WKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCL---ICNLSTIEIPW- 83 (134)
Q Consensus 11 ~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~---~~~l~~L~~~~- 83 (134)
..|+.+++++|.++.++..+ .+.++.|++++|.+.....-. +++|+.||+++|.++ .+..+ +++.+.|....
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhh
Confidence 47889999999999888876 499999999999988654322 899999999999987 44433 44444444421
Q ss_pred --cCCccCcCCCCCcEEEccCCccccCcc--ccccCCCCCcEEEcCCCcccccC
Q 045549 84 --PIPETLSKGSNLRTLNFNGNELVGSVP--RSLLNCENLQVVDLGNNKIEDIL 133 (134)
Q Consensus 84 --~~~~~~~~~~~L~~l~l~~n~l~~~~p--~~~~~l~~L~~L~l~~n~l~~~~ 133 (134)
+--.+++.+.+|..|++.+|+|. .+. ..+++++.|+.+.+.+|.+.+.+
T Consensus 363 ~iE~LSGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 363 KIETLSGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hHhhhhhhHhhhhheeccccccchh-hHHHhcccccccHHHHHhhcCCCccccc
Confidence 22345677889999999999998 433 35899999999999999998753
No 22
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=4.2e-10 Score=71.93 Aligned_cols=100 Identities=22% Similarity=0.330 Sum_probs=50.5
Q ss_pred cCCcccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCC---CCCCccEEEcccCccccccCccccCCCCcccccc
Q 045549 9 EVCRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLD---PSSNMKVFLISNNRFTREIPCLICNLSTIEIPWP 84 (134)
Q Consensus 9 ~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~---~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~ 84 (134)
.+.+|+.|++++|.++.++... .+.|+.|++++|+++..... .+++|++|++++|++.. +..
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~-l~~------------- 105 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISD-LNE------------- 105 (175)
T ss_dssp T-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---S-CCC-------------
T ss_pred hhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCC-hHH-------------
Confidence 4678999999999999876643 49999999999999986432 28899999999999973 211
Q ss_pred CCccCcCCCCCcEEEccCCccccCccc----cccCCCCCcEEEc
Q 045549 85 IPETLSKGSNLRTLNFNGNELVGSVPR----SLLNCENLQVVDL 124 (134)
Q Consensus 85 ~~~~~~~~~~L~~l~l~~n~l~~~~p~----~~~~l~~L~~L~l 124 (134)
-..+..+++|+.|++.+|.++. .+. .+..+|+|+.||-
T Consensus 106 -l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 106 -LEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -CGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETT
T ss_pred -hHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCC
Confidence 1245668999999999999984 343 4788999999884
No 23
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.95 E-value=1e-09 Score=58.40 Aligned_cols=52 Identities=27% Similarity=0.340 Sum_probs=23.7
Q ss_pred cccEEEcCCCccCCCCcccc---cCCcEEEccCcccCCcCCCC---CCCccEEEcccC
Q 045549 12 RDIKIQFGKNSFDGIKKLPW---KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNN 63 (134)
Q Consensus 12 ~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n 63 (134)
+|+.|++++|.++.+|+..+ ++|++|++++|.++...+.. +++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 45555555555555444332 44444444444444333322 344444444444
No 24
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.91 E-value=1.6e-08 Score=81.01 Aligned_cols=113 Identities=16% Similarity=0.219 Sum_probs=47.8
Q ss_pred ccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCccc--------
Q 045549 13 DIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEI-------- 81 (134)
Q Consensus 13 L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-------- 81 (134)
|+.|.+.++.++.+|..+ ..+|..|++.+|.+....... ++.|+.++++++..-..+|. +..+++|+.
T Consensus 591 Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~ 669 (1153)
T PLN03210 591 LRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSS 669 (1153)
T ss_pred cEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCC
Confidence 444444444443344332 244555555555544322111 44555555554432223332 333333333
Q ss_pred cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCC
Q 045549 82 PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNN 127 (134)
Q Consensus 82 ~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 127 (134)
...+|..++.+++|+.|+++++.....+|..+ ++++|+.|++++|
T Consensus 670 L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc 714 (1153)
T PLN03210 670 LVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGC 714 (1153)
T ss_pred ccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCC
Confidence 22344455555555555555432222444433 3444444544444
No 25
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.82 E-value=3.3e-08 Score=79.21 Aligned_cols=126 Identities=16% Similarity=0.185 Sum_probs=97.1
Q ss_pred ccccccccCCcccEEEcCCCccC------C-CCccc---ccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccC
Q 045549 2 LEEEVTQEVCRDIKIQFGKNSFD------G-IKKLP---WKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIP 70 (134)
Q Consensus 2 ~~~~~~~~~~~L~~L~l~~n~l~------~-~~~~~---~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~ 70 (134)
++.+.|..+++|+.|.+..+... . +|..+ ..+++.|.+.++.++...... +.+|+.|++.+|.+. .++
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~-~L~ 627 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE-KLW 627 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc-ccc
Confidence 34556889999999998665422 1 45543 267999999999887654444 789999999999998 677
Q ss_pred ccccCCCCccc--------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcc
Q 045549 71 CLICNLSTIEI--------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKI 129 (134)
Q Consensus 71 ~~~~~l~~L~~--------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 129 (134)
..+..+.+|+. ...+| .++.+++|+.|++++|.....+|..+.++++|+.|++++|..
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~ 693 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCEN 693 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCC
Confidence 77777777776 23445 467789999999998765558899999999999999998743
No 26
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.79 E-value=3.7e-10 Score=86.10 Aligned_cols=123 Identities=23% Similarity=0.275 Sum_probs=92.3
Q ss_pred ccccCCcccEEEcCCCccCCCCcccc----------------------------cCCcEEEccCcccCCc-CCCC--CCC
Q 045549 6 VTQEVCRDIKIQFGKNSFDGIKKLPW----------------------------KNLEYLDFRSNLLQGL-FLDP--SSN 54 (134)
Q Consensus 6 ~~~~~~~L~~L~l~~n~l~~~~~~~~----------------------------~~L~~L~l~~n~l~~~-~~~~--l~~ 54 (134)
+......|+.|++..|++..+|+.++ +.|+.|.+.+|.++.. +|.. +..
T Consensus 305 ~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~h 384 (1081)
T KOG0618|consen 305 FLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKH 384 (1081)
T ss_pred cccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccc
Confidence 34467899999999999988776442 2345556777777754 3333 788
Q ss_pred ccEEEcccCccccccCccccCCCCccc-------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCC
Q 045549 55 MKVFLISNNRFTREIPCLICNLSTIEI-------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNN 127 (134)
Q Consensus 55 l~~L~l~~n~l~~~~~~~~~~l~~L~~-------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 127 (134)
|++|++++|++...-...+.+|..|.. ...+|.++..+..|+.|...+|.+. ..| .+..++.|+++|++.|
T Consensus 385 LKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N 462 (1081)
T KOG0618|consen 385 LKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCN 462 (1081)
T ss_pred eeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccc
Confidence 999999999988444455667766665 4467777888888888888888888 778 7888999999999999
Q ss_pred ccc
Q 045549 128 KIE 130 (134)
Q Consensus 128 ~l~ 130 (134)
+++
T Consensus 463 ~L~ 465 (1081)
T KOG0618|consen 463 NLS 465 (1081)
T ss_pred hhh
Confidence 875
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.78 E-value=2.9e-10 Score=79.83 Aligned_cols=124 Identities=19% Similarity=0.255 Sum_probs=87.3
Q ss_pred cccccCC-cccEEEcCCCccCCCCcccc---cCCcEEEccCcccCCcCCCC---CCCccE-EEcccCccccccCccccCC
Q 045549 5 EVTQEVC-RDIKIQFGKNSFDGIKKLPW---KNLEYLDFRSNLLQGLFLDP---SSNMKV-FLISNNRFTREIPCLICNL 76 (134)
Q Consensus 5 ~~~~~~~-~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~n~l~~~~~~~---l~~l~~-L~l~~n~l~~~~~~~~~~l 76 (134)
++|.++| ..+.+.|..|.|+.+|+..| .+|++|+++.|.++.+.|.. +.++.. ++.++|+|+......|+.+
T Consensus 60 eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL 139 (498)
T KOG4237|consen 60 EVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL 139 (498)
T ss_pred cCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence 4566665 45567888888888888765 77888888888888777665 444333 3445588885555667777
Q ss_pred CCccc--------cccCCccCcCCCCCcEEEccCCccccCccc-cccCCCCCcEEEcCCCcc
Q 045549 77 STIEI--------PWPIPETLSKGSNLRTLNFNGNELVGSVPR-SLLNCENLQVVDLGNNKI 129 (134)
Q Consensus 77 ~~L~~--------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l 129 (134)
..++. .-..++.+..++++..|.+-.|.+. .++. .|..+.+++.+++..|.+
T Consensus 140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcc
Confidence 77766 2234556777888888888888887 5554 678888888888877763
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.75 E-value=8.2e-09 Score=73.84 Aligned_cols=122 Identities=26% Similarity=0.355 Sum_probs=67.8
Q ss_pred cCCcccEEEcCCCccCCCCccc--ccCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCccc---
Q 045549 9 EVCRDIKIQFGKNSFDGIKKLP--WKNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEI--- 81 (134)
Q Consensus 9 ~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--- 81 (134)
.+++|+.|++++|++..++... .+.++.|++++|+++.+.+.. ...|+++.+++|.+. ..+..+.++..+..
T Consensus 161 ~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l 239 (394)
T COG4886 161 NLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLEL 239 (394)
T ss_pred ccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhccccccccc
Confidence 3444444555555554444432 244455555555544433321 333555555555332 23333333333222
Q ss_pred ----cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccC
Q 045549 82 ----PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDIL 133 (134)
Q Consensus 82 ----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 133 (134)
...++..++.+.+++.+++++|.++ .++. ++.+.+++.+++++|.+....
T Consensus 240 ~~n~~~~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 240 SNNKLEDLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred CCceeeeccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccc
Confidence 1122566777788999999999888 5554 888889999999998876553
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.75 E-value=1.7e-09 Score=74.95 Aligned_cols=123 Identities=19% Similarity=0.307 Sum_probs=59.4
Q ss_pred cCCcccEEEcCCCccCC-CCccc--cc---CCcEEEccCcccCCc----CCC---CC-CCccEEEcccCccccc----cC
Q 045549 9 EVCRDIKIQFGKNSFDG-IKKLP--WK---NLEYLDFRSNLLQGL----FLD---PS-SNMKVFLISNNRFTRE----IP 70 (134)
Q Consensus 9 ~~~~L~~L~l~~n~l~~-~~~~~--~~---~L~~L~l~~n~l~~~----~~~---~l-~~l~~L~l~~n~l~~~----~~ 70 (134)
.+++|+.|++++|.+.. .+..+ .. +++.|++++|.+++. ... .+ +.|+.|++++|.+++. ++
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~ 158 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA 158 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence 45677777777776654 22211 12 267777777766521 000 13 5666667766666521 22
Q ss_pred ccccCCCCccc----c--------ccCCccCcCCCCCcEEEccCCccccC----ccccccCCCCCcEEEcCCCcccc
Q 045549 71 CLICNLSTIEI----P--------WPIPETLSKGSNLRTLNFNGNELVGS----VPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 71 ~~~~~l~~L~~----~--------~~~~~~~~~~~~L~~l~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
..+..+.+|+. . ..++..+..+++|+.+++++|.+.+. +...+..+++|+.|++++|.+++
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 22332222322 0 01122233345666666666655422 12234455566666666665553
No 30
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.60 E-value=7.1e-08 Score=47.79 Aligned_cols=39 Identities=38% Similarity=0.656 Sum_probs=30.0
Q ss_pred CCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549 93 SNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132 (134)
Q Consensus 93 ~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 132 (134)
++|+.|++++|+|+ .+|..++++++|+.|++++|++++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCC
Confidence 46788888888888 6777788888888888888888754
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.56 E-value=3.2e-08 Score=70.84 Aligned_cols=119 Identities=29% Similarity=0.362 Sum_probs=71.2
Q ss_pred cccEEEcCCCccCCCCcc--cccCCcEEEccCcccCCcCCC--CCCCccEEEcccCccccccCccccCCCCccc----c-
Q 045549 12 RDIKIQFGKNSFDGIKKL--PWKNLEYLDFRSNLLQGLFLD--PSSNMKVFLISNNRFTREIPCLICNLSTIEI----P- 82 (134)
Q Consensus 12 ~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~~~~--~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~----~- 82 (134)
+|+.|++++|.+..+|.. -.++++.|++++|+++...+. ..+.++.|++++|++. .+|..+.....|.. .
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNN 219 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCC
Confidence 555566666666555322 235566666666666554444 2556666666666666 55544332222322 1
Q ss_pred --ccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549 83 --WPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132 (134)
Q Consensus 83 --~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 132 (134)
...+..++.+..+..+.+.+|++. ..+..++.+.+++.|++++|.++..
T Consensus 220 ~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 220 SIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI 270 (394)
T ss_pred cceecchhhhhcccccccccCCceee-eccchhccccccceecccccccccc
Confidence 234455666677777777777777 4467788888888888888887653
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.54 E-value=7.9e-09 Score=72.80 Aligned_cols=116 Identities=15% Similarity=0.141 Sum_probs=95.6
Q ss_pred EEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc--------cc
Q 045549 15 KIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI--------PW 83 (134)
Q Consensus 15 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--------~~ 83 (134)
.++.++-.+++||..+.+....+.+..|+++.+.+.. +.+|+.|||+.|.|+.+-|.+|..+..+.. ..
T Consensus 50 ~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred eEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 3566777787899998899999999999999876665 889999999999999888999988877655 12
Q ss_pred cCC-ccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccc
Q 045549 84 PIP-ETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIE 130 (134)
Q Consensus 84 ~~~-~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 130 (134)
.+| ..|+.+.+++.|.+.-|++.-...+.|..++++..|.+-+|.+.
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q 177 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ 177 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh
Confidence 233 46888888898988888888677778999999988888888764
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.49 E-value=3.4e-08 Score=68.46 Aligned_cols=38 Identities=29% Similarity=0.384 Sum_probs=17.1
Q ss_pred CCCcEEEccCCcccc----CccccccCCCCCcEEEcCCCccc
Q 045549 93 SNLRTLNFNGNELVG----SVPRSLLNCENLQVVDLGNNKIE 130 (134)
Q Consensus 93 ~~L~~l~l~~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~ 130 (134)
+.|+.+++++|.++. .+...+..+++|+.+++++|.++
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 344555555554431 11223333445555555555554
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.45 E-value=8.8e-09 Score=75.46 Aligned_cols=97 Identities=33% Similarity=0.415 Sum_probs=64.7
Q ss_pred cCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccc-------cccCCccCcCCCCCcEEEccCC
Q 045549 32 KNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEI-------PWPIPETLSKGSNLRTLNFNGN 103 (134)
Q Consensus 32 ~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-------~~~~~~~~~~~~~L~~l~l~~n 103 (134)
..+++++++.|+++...... .--|++|.+++|+++ .+|..++.+.+|.. ...+|..++.+.+|+.+.+..|
T Consensus 121 ~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn 199 (722)
T KOG0532|consen 121 EALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN 199 (722)
T ss_pred hHHHHhhhccchhhcCChhhhcCcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh
Confidence 45666677777766543333 445777777777777 67777665555544 2345666777777777777777
Q ss_pred ccccCccccccCCCCCcEEEcCCCcccc
Q 045549 104 ELVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 104 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
++. .+|..++.++ |..||++.|+++-
T Consensus 200 ~l~-~lp~El~~Lp-Li~lDfScNkis~ 225 (722)
T KOG0532|consen 200 HLE-DLPEELCSLP-LIRLDFSCNKISY 225 (722)
T ss_pred hhh-hCCHHHhCCc-eeeeecccCceee
Confidence 777 6677777554 7788888887753
No 35
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.40 E-value=2.7e-09 Score=80.23 Aligned_cols=102 Identities=20% Similarity=0.209 Sum_probs=55.0
Q ss_pred CCcccEEEcCCCccCCCCcccc-cCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCccccccCC
Q 045549 10 VCRDIKIQFGKNSFDGIKKLPW-KNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIP 86 (134)
Q Consensus 10 ~~~L~~L~l~~n~l~~~~~~~~-~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~ 86 (134)
++.++.|+|++|.+++++...+ +.|+.|++++|.+....-.. -..|+.|.+++|.++ .-
T Consensus 186 l~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~------------------tL 247 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALT------------------TL 247 (1096)
T ss_pred HHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHHH------------------hh
Confidence 3444555555555544442221 45555555555544322222 112555555555444 12
Q ss_pred ccCcCCCCCcEEEccCCccccC-ccccccCCCCCcEEEcCCCcc
Q 045549 87 ETLSKGSNLRTLNFNGNELVGS-VPRSLLNCENLQVVDLGNNKI 129 (134)
Q Consensus 87 ~~~~~~~~L~~l~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l 129 (134)
..+.++.+|+.||+++|-+.+- --..+..+..|+.|+++||.+
T Consensus 248 ~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 248 RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 2456778888888888877632 122456667788888888876
No 36
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.37 E-value=6.7e-09 Score=63.54 Aligned_cols=99 Identities=19% Similarity=0.228 Sum_probs=61.8
Q ss_pred cccEEEcCCCccCCCCcccc-----cCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccccc
Q 045549 12 RDIKIQFGKNSFDGIKKLPW-----KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEIPW 83 (134)
Q Consensus 12 ~L~~L~l~~n~l~~~~~~~~-----~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~ 83 (134)
.+..++|+.|++-.+++.++ ..++.+++++|.+++..+.. .+.++.+.+.+|.++ .+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dv-------------- 92 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DV-------------- 92 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hc--------------
Confidence 45567777777766666553 66777788888877655544 456777788888777 33
Q ss_pred cCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCc
Q 045549 84 PIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNK 128 (134)
Q Consensus 84 ~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 128 (134)
|.++..++.|+.++++.|.+. ..|..+..+.++..|+..+|.
T Consensus 93 --PeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 93 --PEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred --hHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCc
Confidence 444455555566666666555 445555555555555555554
No 37
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.32 E-value=1.9e-06 Score=56.04 Aligned_cols=99 Identities=20% Similarity=0.278 Sum_probs=64.2
Q ss_pred cccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccccccCCc
Q 045549 12 RDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPE 87 (134)
Q Consensus 12 ~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~ 87 (134)
+...+++++|++..++... .+.|.+|.+++|+++.+.|.. ++.+..|.+.+|.+... . . -+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l-~-------------d-l~ 107 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL-G-------------D-LD 107 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh-h-------------h-cc
Confidence 4455666776665544433 366777777777777666655 56677777777766511 1 0 12
Q ss_pred cCcCCCCCcEEEccCCccccCccc----cccCCCCCcEEEcCC
Q 045549 88 TLSKGSNLRTLNFNGNELVGSVPR----SLLNCENLQVVDLGN 126 (134)
Q Consensus 88 ~~~~~~~L~~l~l~~n~l~~~~p~----~~~~l~~L~~L~l~~ 126 (134)
.+..|++|+.|.+-+|.++ ..+. .+..+++|++||.++
T Consensus 108 pLa~~p~L~~Ltll~Npv~-~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 108 PLASCPKLEYLTLLGNPVE-HKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hhccCCccceeeecCCchh-cccCceeEEEEecCcceEeehhh
Confidence 3456788888888888887 3332 477888999998764
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.28 E-value=2.9e-07 Score=66.50 Aligned_cols=104 Identities=22% Similarity=0.253 Sum_probs=61.9
Q ss_pred ccCCcccEEEcCCCccCCCCc--ccccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCcccccc
Q 045549 8 QEVCRDIKIQFGKNSFDGIKK--LPWKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEIPWP 84 (134)
Q Consensus 8 ~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~ 84 (134)
..+.+++.|++.+|.+.++.. ..+++|++|++++|.++.+.+-. ++.|+.|++.+|.++ .
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~-~---------------- 154 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLIS-D---------------- 154 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcch-h----------------
Confidence 345666667777777766544 23466777777777766655444 566777777777666 1
Q ss_pred CCccCcCCCCCcEEEccCCccccCcccc-ccCCCCCcEEEcCCCccc
Q 045549 85 IPETLSKGSNLRTLNFNGNELVGSVPRS-LLNCENLQVVDLGNNKIE 130 (134)
Q Consensus 85 ~~~~~~~~~~L~~l~l~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~ 130 (134)
...+..+..|+.+++++|.++ .+... ..++.+++.+++.+|.+.
T Consensus 155 -~~~~~~l~~L~~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 155 -ISGLESLKSLKLLDLSYNRIV-DIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred -ccCCccchhhhcccCCcchhh-hhhhhhhhhccchHHHhccCCchh
Confidence 123334566666777777666 22221 355556666666666553
No 39
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.18 E-value=5.1e-08 Score=73.59 Aligned_cols=102 Identities=22% Similarity=0.246 Sum_probs=78.9
Q ss_pred cccEEEcCCCccCCCCccc--ccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccccccCCcc
Q 045549 12 RDIKIQFGKNSFDGIKKLP--WKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPET 88 (134)
Q Consensus 12 ~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~~ 88 (134)
.|...+.++|.+..++..+ .+.++.|+++.|++++...-. ++.|++||+++|++. .+|.. .
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~-~vp~l---------------~ 228 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLR-HVPQL---------------S 228 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhc-ccccc---------------c
Confidence 5667788888887777765 388999999999988765222 889999999999988 55522 2
Q ss_pred CcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549 89 LSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132 (134)
Q Consensus 89 ~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 132 (134)
...+. |..|.+.+|.++ .+ ..+.++.+|+.||++.|-|.+.
T Consensus 229 ~~gc~-L~~L~lrnN~l~-tL-~gie~LksL~~LDlsyNll~~h 269 (1096)
T KOG1859|consen 229 MVGCK-LQLLNLRNNALT-TL-RGIENLKSLYGLDLSYNLLSEH 269 (1096)
T ss_pred hhhhh-heeeeecccHHH-hh-hhHHhhhhhhccchhHhhhhcc
Confidence 33444 899999999988 43 3588999999999999988653
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.15 E-value=5e-07 Score=62.27 Aligned_cols=96 Identities=23% Similarity=0.375 Sum_probs=52.7
Q ss_pred ccCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCccc-------cccCCccCcCCCCCcEEEcc
Q 045549 31 WKNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEI-------PWPIPETLSKGSNLRTLNFN 101 (134)
Q Consensus 31 ~~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-------~~~~~~~~~~~~~L~~l~l~ 101 (134)
|..++.+++++|.++.+.-+- .+.++.|+++.|++. .+.. +..+.+|.. ...+-.+-..+-++..|.++
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 467888899999887643332 778999999999887 2221 333333332 11111122233344445555
Q ss_pred CCccccCccccccCCCCCcEEEcCCCccc
Q 045549 102 GNELVGSVPRSLLNCENLQVVDLGNNKIE 130 (134)
Q Consensus 102 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 130 (134)
.|.+. .+ +.++.+=+|..||+++|+|.
T Consensus 361 ~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 361 QNKIE-TL-SGLRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred hhhHh-hh-hhhHhhhhheeccccccchh
Confidence 55444 21 23444555666777777663
No 41
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.11 E-value=2.7e-06 Score=42.09 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=14.6
Q ss_pred cccEEEcCCCccCCCCccc--ccCCcEEEccCcccC
Q 045549 12 RDIKIQFGKNSFDGIKKLP--WKNLEYLDFRSNLLQ 45 (134)
Q Consensus 12 ~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~ 45 (134)
+|++|++++|+++++|..+ +++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 4455555555555444422 244444444444443
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=2e-07 Score=66.49 Aligned_cols=126 Identities=15% Similarity=0.234 Sum_probs=77.5
Q ss_pred cccccCCcccEEEcCCCccCCCCcc---c--ccCCcEEEccCcccCCcCCCC----CCCccEEEcccCccccccC-cccc
Q 045549 5 EVTQEVCRDIKIQFGKNSFDGIKKL---P--WKNLEYLDFRSNLLQGLFLDP----SSNMKVFLISNNRFTREIP-CLIC 74 (134)
Q Consensus 5 ~~~~~~~~L~~L~l~~n~l~~~~~~---~--~~~L~~L~l~~n~l~~~~~~~----l~~l~~L~l~~n~l~~~~~-~~~~ 74 (134)
++...+++++.|+++.|-+...... . .++|+.|.++.|++....... ++.++.|.++.|+++..-- ....
T Consensus 140 ~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~ 219 (505)
T KOG3207|consen 140 EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILL 219 (505)
T ss_pred hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHH
Confidence 3556788888888888877652221 1 388888888888876543333 6778888888888763211 1122
Q ss_pred CCCCccc----cc--cCCc--cCcCCCCCcEEEccCCccccCcc--ccccCCCCCcEEEcCCCcccc
Q 045549 75 NLSTIEI----PW--PIPE--TLSKGSNLRTLNFNGNELVGSVP--RSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 75 ~l~~L~~----~~--~~~~--~~~~~~~L~~l~l~~n~l~~~~p--~~~~~l~~L~~L~l~~n~l~~ 131 (134)
.++++.. .. ..-. ....+..|+.|++++|.+- ..+ ...+.++.|..|.++.+.+++
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~s 285 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIAS 285 (505)
T ss_pred hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcch
Confidence 2333333 11 1111 1223466778888888776 444 346777888888888877764
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.08 E-value=2.6e-06 Score=66.71 Aligned_cols=117 Identities=21% Similarity=0.222 Sum_probs=81.5
Q ss_pred CcccEEEcCCCccCCCCccc-ccCCcEEEccCcc--cCCcCCC---CCCCccEEEcccCccccccCccccCCCCccc---
Q 045549 11 CRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNL--LQGLFLD---PSSNMKVFLISNNRFTREIPCLICNLSTIEI--- 81 (134)
Q Consensus 11 ~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~--l~~~~~~---~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--- 81 (134)
...+...+.+|.+..++... .+.+++|-+..|. +...... .++.|++||+++|.--+..|..++.+.+|++
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 35566666666665555443 3668888888875 3332222 2888999999887655588888888888877
Q ss_pred ----cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCC
Q 045549 82 ----PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNN 127 (134)
Q Consensus 82 ----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 127 (134)
...+|..++.+..|.+|++..+.....+|.....+.+|++|.+...
T Consensus 603 ~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 603 SDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred cCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 4467888888888888888877655455666667888888777543
No 44
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.99 E-value=2.5e-05 Score=56.23 Aligned_cols=113 Identities=15% Similarity=0.210 Sum_probs=64.9
Q ss_pred cCCcccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC-CCCccEEEcccC-ccccccCccccCCCCccc-----
Q 045549 9 EVCRDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNN-RFTREIPCLICNLSTIEI----- 81 (134)
Q Consensus 9 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~----- 81 (134)
.+.+++.|++++|.++.+|. +..+|+.|.++++.--...|.. ..+|++|++++| .+. .+|..+..|. +..
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~-LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~-sLP~sLe~L~-L~~n~~~~ 126 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV-LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEIS-GLPESVRSLE-IKGSATDS 126 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC-CCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccc-ccccccceEE-eCCCCCcc
Confidence 35788889999988888873 3467888888875432334433 456888888877 454 5665554332 101
Q ss_pred cccCCccCcC------------------CCCCcEEEccCCccccCccccccCCCCCcEEEcCCC
Q 045549 82 PWPIPETLSK------------------GSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNN 127 (134)
Q Consensus 82 ~~~~~~~~~~------------------~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 127 (134)
...+|..+.. .++|+.|+++++... .+|..+. .+|+.|+++.+
T Consensus 127 L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 127 IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred cccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 1222222211 146777877776654 3343222 36677776554
No 45
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=1.8e-06 Score=61.85 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=25.9
Q ss_pred ccccCCcccEEEcCCCccCC-CCc---ccccCCcEEEccCcccCC
Q 045549 6 VTQEVCRDIKIQFGKNSFDG-IKK---LPWKNLEYLDFRSNLLQG 46 (134)
Q Consensus 6 ~~~~~~~L~~L~l~~n~l~~-~~~---~~~~~L~~L~l~~n~l~~ 46 (134)
+.+.+|+|+.|+++.|.+.- ... ...++++.|.++.|.++.
T Consensus 167 i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~ 211 (505)
T KOG3207|consen 167 IAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSW 211 (505)
T ss_pred HHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCH
Confidence 34567888888888887753 111 123667777777776653
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.91 E-value=2.4e-07 Score=56.82 Aligned_cols=84 Identities=14% Similarity=0.144 Sum_probs=60.9
Q ss_pred CCcccEEEcCCCccCCCCccc---ccCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCcccccc
Q 045549 10 VCRDIKIQFGKNSFDGIKKLP---WKNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEIPWP 84 (134)
Q Consensus 10 ~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~ 84 (134)
...|+..++++|.++++|+.+ ++.++.+++++|.++...-.. ++.|+.+.++.|.+. ..|+-
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~-~~p~v------------ 118 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLN-AEPRV------------ 118 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccc-cchHH------------
Confidence 456778899999999999876 378999999999998754333 899999999999988 33333
Q ss_pred CCccCcCCCCCcEEEccCCccccCccc
Q 045549 85 IPETLSKGSNLRTLNFNGNELVGSVPR 111 (134)
Q Consensus 85 ~~~~~~~~~~L~~l~l~~n~l~~~~p~ 111 (134)
+..+.++..|+..+|.+. .+|-
T Consensus 119 ----i~~L~~l~~Lds~~na~~-eid~ 140 (177)
T KOG4579|consen 119 ----IAPLIKLDMLDSPENARA-EIDV 140 (177)
T ss_pred ----HHHHHhHHHhcCCCCccc-cCcH
Confidence 333455555555555555 4443
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.89 E-value=3.4e-06 Score=61.02 Aligned_cols=124 Identities=23% Similarity=0.285 Sum_probs=81.8
Q ss_pred cccCCcccEEEcCCCccCCCCcc-cccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccc---
Q 045549 7 TQEVCRDIKIQFGKNSFDGIKKL-PWKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEI--- 81 (134)
Q Consensus 7 ~~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--- 81 (134)
...+++|++|++++|.++.+... ....|+.|++++|.++.+.-.. +..++.+++++|++...-+.....+..+..
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l 193 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDL 193 (414)
T ss_pred hhhhhcchheeccccccccccchhhccchhhheeccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhc
Confidence 45789999999999999985543 3466999999999998764444 889999999999988444410233333332
Q ss_pred -----------------------cccCCc--cCcCCCC--CcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549 82 -----------------------PWPIPE--TLSKGSN--LRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 82 -----------------------~~~~~~--~~~~~~~--L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
...+.. .+..+.. |+.+++++|.+. ..+..+..+..+..+++.+|++..
T Consensus 194 ~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 194 GGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred cCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccc-cccccccccccccccchhhccccc
Confidence 000100 1111122 667777777777 444566777778888888777654
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.78 E-value=5.3e-06 Score=57.85 Aligned_cols=122 Identities=21% Similarity=0.271 Sum_probs=68.9
Q ss_pred cCCcccEEEcCCCccCC--CCccc-----ccCCcEEEccCcccCCcCC----------------CCCCCccEEEcccCcc
Q 045549 9 EVCRDIKIQFGKNSFDG--IKKLP-----WKNLEYLDFRSNLLQGLFL----------------DPSSNMKVFLISNNRF 65 (134)
Q Consensus 9 ~~~~L~~L~l~~n~l~~--~~~~~-----~~~L~~L~l~~n~l~~~~~----------------~~l~~l~~L~l~~n~l 65 (134)
..+.|+.|+||+|.+.. ++..- +..|+.|.+.+|.+..... ..-+.|++++..+|++
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 45678888888888854 33211 2667778888886652211 0145688888888887
Q ss_pred ccccCcc----ccCCCCccc-----cccCCc-------cCcCCCCCcEEEccCCccccC----ccccccCCCCCcEEEcC
Q 045549 66 TREIPCL----ICNLSTIEI-----PWPIPE-------TLSKGSNLRTLNFNGNELVGS----VPRSLLNCENLQVVDLG 125 (134)
Q Consensus 66 ~~~~~~~----~~~l~~L~~-----~~~~~~-------~~~~~~~L~~l~l~~n~l~~~----~p~~~~~l~~L~~L~l~ 125 (134)
...-... +...+.|.. .+.-|+ .+..++.|+.|++..|.|+.. +...+..+++|+.++++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 6333322 223333332 112222 345667777777777766521 22345556667777777
Q ss_pred CCccc
Q 045549 126 NNKIE 130 (134)
Q Consensus 126 ~n~l~ 130 (134)
.+.++
T Consensus 250 dcll~ 254 (382)
T KOG1909|consen 250 DCLLE 254 (382)
T ss_pred ccccc
Confidence 66654
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.62 E-value=0.00017 Score=47.20 Aligned_cols=101 Identities=24% Similarity=0.307 Sum_probs=70.4
Q ss_pred cEEEcCCCccCCCCc-ccc-cCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccccccCCccCc
Q 045549 14 IKIQFGKNSFDGIKK-LPW-KNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLS 90 (134)
Q Consensus 14 ~~L~l~~n~l~~~~~-~~~-~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~ 90 (134)
+.+++.+..+..+-. ..+ .+...+++++|.+....--. ++.|.+|.+++|+++..-| ..-.
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p----------------~L~~ 85 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDP----------------DLDT 85 (233)
T ss_pred cccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeecc----------------chhh
Confidence 345555555443222 222 67888999999987643333 8999999999999983322 2222
Q ss_pred CCCCCcEEEccCCccccCccc--cccCCCCCcEEEcCCCcccc
Q 045549 91 KGSNLRTLNFNGNELVGSVPR--SLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 91 ~~~~L~~l~l~~n~l~~~~p~--~~~~l~~L~~L~l~~n~l~~ 131 (134)
-++.|..|.+.+|.+. .+.+ -+..+++|+.|.+-+|.++.
T Consensus 86 ~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 86 FLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEH 127 (233)
T ss_pred hccccceEEecCcchh-hhhhcchhccCCccceeeecCCchhc
Confidence 3477889999999998 4433 47888999999999998764
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.62 E-value=2.3e-05 Score=60.15 Aligned_cols=119 Identities=13% Similarity=0.056 Sum_probs=79.3
Q ss_pred CcccEEEcCCCccCC--CCccc---ccCCcEEEccCcccCCcC----CCCCCCccEEEcccCccccccCccccCCCCccc
Q 045549 11 CRDIKIQFGKNSFDG--IKKLP---WKNLEYLDFRSNLLQGLF----LDPSSNMKVFLISNNRFTREIPCLICNLSTIEI 81 (134)
Q Consensus 11 ~~L~~L~l~~n~l~~--~~~~~---~~~L~~L~l~~n~l~~~~----~~~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~ 81 (134)
.+|+.|++++...-. =+..+ +|+|+.|.+++-.+.... -..+++|..||+++++++.. ..+..+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 477888888744321 11111 399999999997765432 22388999999999998844 56677777777
Q ss_pred -----ccc----CCccCcCCCCCcEEEccCCccccCc------cccccCCCCCcEEEcCCCcccc
Q 045549 82 -----PWP----IPETLSKGSNLRTLNFNGNELVGSV------PRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 82 -----~~~----~~~~~~~~~~L~~l~l~~n~l~~~~------p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
... .-..+..+++|+.||++........ -+.-..++.|+.||.+++.++.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 111 1113556899999999976554211 1233458899999999887754
No 51
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.60 E-value=3.4e-05 Score=60.62 Aligned_cols=114 Identities=19% Similarity=0.205 Sum_probs=70.5
Q ss_pred CCcccEEEcCCCc--cCCCCcccc---cCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc
Q 045549 10 VCRDIKIQFGKNS--FDGIKKLPW---KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI 81 (134)
Q Consensus 10 ~~~L~~L~l~~n~--l~~~~~~~~---~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~ 81 (134)
.+.++.|-+.+|. +..++..++ +.|.+|++++|.--+..|.. +.+||+|+++++.++ .+|..+.+++.|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence 3457777777665 444555432 77777888877655556655 777888888888877 78877777776665
Q ss_pred --------cccCCccCcCCCCCcEEEccCCcccc--CccccccCCCCCcEEEc
Q 045549 82 --------PWPIPETLSKGSNLRTLNFNGNELVG--SVPRSLLNCENLQVVDL 124 (134)
Q Consensus 82 --------~~~~~~~~~~~~~L~~l~l~~n~l~~--~~p~~~~~l~~L~~L~l 124 (134)
...++.....+.+|+.|.+....... ..-..+.++.+|+.+..
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 11334455557888888877655321 11223455555555554
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.59 E-value=8.1e-05 Score=50.91 Aligned_cols=58 Identities=19% Similarity=0.233 Sum_probs=37.8
Q ss_pred cCCcccEEEcCCCccCC-CCccc------ccCCcEEEccCcccCCcCCCC----------------CCCccEEEcccCcc
Q 045549 9 EVCRDIKIQFGKNSFDG-IKKLP------WKNLEYLDFRSNLLQGLFLDP----------------SSNMKVFLISNNRF 65 (134)
Q Consensus 9 ~~~~L~~L~l~~n~l~~-~~~~~------~~~L~~L~l~~n~l~~~~~~~----------------l~~l~~L~l~~n~l 65 (134)
.+|.++.+++++|.+.. .|..+ ...+..|.+++|.+..+.... -+.|++++...|++
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 46778888888888765 55433 166777788887655332111 45678888888877
Q ss_pred c
Q 045549 66 T 66 (134)
Q Consensus 66 ~ 66 (134)
.
T Consensus 170 e 170 (388)
T COG5238 170 E 170 (388)
T ss_pred c
Confidence 6
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=6.8e-05 Score=51.86 Aligned_cols=125 Identities=19% Similarity=0.216 Sum_probs=73.6
Q ss_pred cccCCcccEEEcCCCccCC-CCcc--cccCCcEEEccCcccCCcCCCC----CCCccEEEcccCcccc---------ccC
Q 045549 7 TQEVCRDIKIQFGKNSFDG-IKKL--PWKNLEYLDFRSNLLQGLFLDP----SSNMKVFLISNNRFTR---------EIP 70 (134)
Q Consensus 7 ~~~~~~L~~L~l~~n~l~~-~~~~--~~~~L~~L~l~~n~l~~~~~~~----l~~l~~L~l~~n~l~~---------~~~ 70 (134)
..++|.|+.|+++.|.+.. +... ...+++.|-+.+..+....... ++.++.++++.|.+.. .+.
T Consensus 93 le~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s 172 (418)
T KOG2982|consen 93 LEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWS 172 (418)
T ss_pred HhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccc
Confidence 3578888888888888875 3332 2377888888877666432222 5666777777764321 111
Q ss_pred ccccCCCCccc------------------------cccC-----CccCcCCCCCcEEEccCCccccCcc--ccccCCCCC
Q 045549 71 CLICNLSTIEI------------------------PWPI-----PETLSKGSNLRTLNFNGNELVGSVP--RSLLNCENL 119 (134)
Q Consensus 71 ~~~~~l~~L~~------------------------~~~~-----~~~~~~~~~L~~l~l~~n~l~~~~p--~~~~~l~~L 119 (134)
.....++.+.- .+.+ ...+..++.+..|+++.|++. ... +.+.+++++
T Consensus 173 ~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~id-swasvD~Ln~f~~l 251 (418)
T KOG2982|consen 173 TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNID-SWASVDALNGFPQL 251 (418)
T ss_pred hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccc-cHHHHHHHcCCchh
Confidence 11111111111 0111 123445566777888888876 432 467888888
Q ss_pred cEEEcCCCccccc
Q 045549 120 QVVDLGNNKIEDI 132 (134)
Q Consensus 120 ~~L~l~~n~l~~~ 132 (134)
.-|.+.+|.+.+.
T Consensus 252 ~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 252 VDLRVSENPLSDP 264 (418)
T ss_pred heeeccCCccccc
Confidence 8888888887654
No 54
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.14 E-value=0.00036 Score=49.00 Aligned_cols=121 Identities=14% Similarity=0.229 Sum_probs=71.2
Q ss_pred cCCcccEEEcCCCccCCCCcccc-------cCCcEEEccCcccCCcCCCC-------CCCccEEEcccCcccc----ccC
Q 045549 9 EVCRDIKIQFGKNSFDGIKKLPW-------KNLEYLDFRSNLLQGLFLDP-------SSNMKVFLISNNRFTR----EIP 70 (134)
Q Consensus 9 ~~~~L~~L~l~~n~l~~~~~~~~-------~~L~~L~l~~n~l~~~~~~~-------l~~l~~L~l~~n~l~~----~~~ 70 (134)
+-+.|+++....|.+..-++..+ +.++.+.+..|.+....-.. ++.|++||++.|-++. .+.
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 34566677777666654333221 56677777777654221100 6778888888887752 233
Q ss_pred ccccCCCCccc------------cccCCcc-CcCCCCCcEEEccCCccccC----ccccccCCCCCcEEEcCCCcc
Q 045549 71 CLICNLSTIEI------------PWPIPET-LSKGSNLRTLNFNGNELVGS----VPRSLLNCENLQVVDLGNNKI 129 (134)
Q Consensus 71 ~~~~~l~~L~~------------~~~~~~~-~~~~~~L~~l~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l 129 (134)
..++.|++|+. ...+-+. -...++|+.+.+.+|.++.. +..++...+.|..|++++|++
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 44455555444 0011111 12357888889999888732 223456678899999999988
No 55
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.11 E-value=0.00031 Score=29.20 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=11.2
Q ss_pred ccEEEcccCccccccCcccc
Q 045549 55 MKVFLISNNRFTREIPCLIC 74 (134)
Q Consensus 55 l~~L~l~~n~l~~~~~~~~~ 74 (134)
|++||+++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 566666666666 5554443
No 56
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=2.6e-05 Score=53.42 Aligned_cols=99 Identities=23% Similarity=0.213 Sum_probs=61.8
Q ss_pred CCcccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccccccCCc
Q 045549 10 VCRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPE 87 (134)
Q Consensus 10 ~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~ 87 (134)
+.+++.|++=+|.+++|.-.. ++.+++|.++-|+++.+.|-. ++.|+.|+|+.|.|. .+... .
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~-sldEL--------------~ 82 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIE-SLDEL--------------E 82 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccc-cHHHH--------------H
Confidence 445666777777666533221 377788888888877765555 777788888777776 21110 1
Q ss_pred cCcCCCCCcEEEccCCccccCccc-----cccCCCCCcEEE
Q 045549 88 TLSKGSNLRTLNFNGNELVGSVPR-----SLLNCENLQVVD 123 (134)
Q Consensus 88 ~~~~~~~L~~l~l~~n~l~~~~p~-----~~~~l~~L~~L~ 123 (134)
-+.++++|+.|-+..|-.+|.-+. .+..+++|+.||
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 234567777777777777765432 355677777665
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.84 E-value=0.00074 Score=45.60 Aligned_cols=32 Identities=28% Similarity=0.228 Sum_probs=15.9
Q ss_pred cCCcEEEccCcccCCcCCCC-CCCccEEEcccC
Q 045549 32 KNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNN 63 (134)
Q Consensus 32 ~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n 63 (134)
..++.+++.+..++...... ++.|+.|+++.|
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDN 75 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCC
Confidence 44555555555544332222 555666666666
No 58
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.70 E-value=0.00095 Score=27.70 Aligned_cols=22 Identities=45% Similarity=0.724 Sum_probs=16.5
Q ss_pred CCcEEEccCCccccCccccccCC
Q 045549 94 NLRTLNFNGNELVGSVPRSLLNC 116 (134)
Q Consensus 94 ~L~~l~l~~n~l~~~~p~~~~~l 116 (134)
+|+.|++++|+++ .+|+.|+++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4788899999888 778776653
No 59
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.58 E-value=0.0014 Score=25.39 Aligned_cols=15 Identities=7% Similarity=0.217 Sum_probs=7.1
Q ss_pred cccEEEcCCCccCCC
Q 045549 12 RDIKIQFGKNSFDGI 26 (134)
Q Consensus 12 ~L~~L~l~~n~l~~~ 26 (134)
+|+.|++++|.++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 456666666665544
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.57 E-value=0.0013 Score=44.38 Aligned_cols=101 Identities=18% Similarity=0.261 Sum_probs=57.8
Q ss_pred ccCCcccEEEcCCCccCCCCccc-ccCCcEEEccCcc--cCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc
Q 045549 8 QEVCRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNL--LQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI 81 (134)
Q Consensus 8 ~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~--l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~ 81 (134)
..+..++.+.+.+..++.+.... .++|+.|.++.|. ..+-.... .++|+++.+++|++. . ...+.
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~-lstl~------- 110 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-D-LSTLR------- 110 (260)
T ss_pred ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-c-ccccc-------
Confidence 34556666666666666533332 2788999998883 33322222 688999999999877 2 22211
Q ss_pred cccCCccCcCCCCCcEEEccCCccccCcc----ccccCCCCCcEEEc
Q 045549 82 PWPIPETLSKGSNLRTLNFNGNELVGSVP----RSLLNCENLQVVDL 124 (134)
Q Consensus 82 ~~~~~~~~~~~~~L~~l~l~~n~l~~~~p----~~~~~l~~L~~L~l 124 (134)
.+..+.+|..|++.++..++ +- ..|.-+++|.+|+-
T Consensus 111 ------pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 111 ------PLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred ------hhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccc
Confidence 22334556666666665543 21 13555666666553
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=3.9e-05 Score=52.57 Aligned_cols=82 Identities=20% Similarity=0.203 Sum_probs=60.3
Q ss_pred cCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccccccCCccCcCCCCCcEEEccCCccccCcc
Q 045549 32 KNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVP 110 (134)
Q Consensus 32 ~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p 110 (134)
.+.+.|+..++.++.+.-.. |+.|++|.|+-|.++. -..+.+|+.|+.|+|..|.|. .+.
T Consensus 19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIss------------------L~pl~rCtrLkElYLRkN~I~-sld 79 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISS------------------LAPLQRCTRLKELYLRKNCIE-SLD 79 (388)
T ss_pred HHhhhhcccCCCccHHHHHHhcccceeEEeecccccc------------------chhHHHHHHHHHHHHHhcccc-cHH
Confidence 45677788888777653333 8889999999988872 224667888888999888887 443
Q ss_pred c--cccCCCCCcEEEcCCCccccc
Q 045549 111 R--SLLNCENLQVVDLGNNKIEDI 132 (134)
Q Consensus 111 ~--~~~~l~~L~~L~l~~n~l~~~ 132 (134)
+ .+.++++|+.|.+..|.-.|.
T Consensus 80 EL~YLknlpsLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 80 ELEYLKNLPSLRTLWLDENPCCGE 103 (388)
T ss_pred HHHHHhcCchhhhHhhccCCcccc
Confidence 3 577888889988888876553
No 62
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.00016 Score=50.11 Aligned_cols=96 Identities=13% Similarity=0.023 Sum_probs=59.6
Q ss_pred ccccCCcccEEEcCCCccCC--CCccc---ccCCcEEEccCcccCCcCCC------CCCCccEEEcccCc-cccccCccc
Q 045549 6 VTQEVCRDIKIQFGKNSFDG--IKKLP---WKNLEYLDFRSNLLQGLFLD------PSSNMKVFLISNNR-FTREIPCLI 73 (134)
Q Consensus 6 ~~~~~~~L~~L~l~~n~l~~--~~~~~---~~~L~~L~l~~n~l~~~~~~------~l~~l~~L~l~~n~-l~~~~~~~~ 73 (134)
++.++..|..|+++.|.+.. +...+ ..+++.|++++++---.... ..+.+..||+++|. ++......|
T Consensus 255 l~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~ 334 (419)
T KOG2120|consen 255 LLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF 334 (419)
T ss_pred HHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHH
Confidence 45678888889999888764 33222 38889999998863311111 17889999999874 554555555
Q ss_pred cCCCCccc------cccCCcc---CcCCCCCcEEEcc
Q 045549 74 CNLSTIEI------PWPIPET---LSKGSNLRTLNFN 101 (134)
Q Consensus 74 ~~l~~L~~------~~~~~~~---~~~~~~L~~l~l~ 101 (134)
.+++.|++ ++..|.. +...++|.+|++.
T Consensus 335 ~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~ 371 (419)
T KOG2120|consen 335 FKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVF 371 (419)
T ss_pred HhcchheeeehhhhcCCChHHeeeeccCcceEEEEec
Confidence 55555555 3334442 3445666666653
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.46 E-value=0.021 Score=34.19 Aligned_cols=59 Identities=14% Similarity=0.236 Sum_probs=34.0
Q ss_pred ccccccccCCcccEEEcCCCccCCCCcccc---cCCcEEEccCcccCCcCCCC---CCCccEEEccc
Q 045549 2 LEEEVTQEVCRDIKIQFGKNSFDGIKKLPW---KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISN 62 (134)
Q Consensus 2 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~ 62 (134)
|+..+|.++.+|+.+.+.. .+..+++..+ .+++.+.+..+ +....... +.+++.+.+..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence 5677888899999999985 5666777654 57889988775 44432222 55788888865
No 64
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=8.8e-05 Score=51.33 Aligned_cols=59 Identities=14% Similarity=0.075 Sum_probs=35.2
Q ss_pred ccCCcccEEEcCCCccCC-CCcccc--cCCcEEEccCcc-cCCc----CCCCCCCccEEEcccCccc
Q 045549 8 QEVCRDIKIQFGKNSFDG-IKKLPW--KNLEYLDFRSNL-LQGL----FLDPSSNMKVFLISNNRFT 66 (134)
Q Consensus 8 ~~~~~L~~L~l~~n~l~~-~~~~~~--~~L~~L~l~~n~-l~~~----~~~~l~~l~~L~l~~n~l~ 66 (134)
+.+..|+.|.+.++++.+ +-..+. ..|..++++.+. ++.. ....+++|..|.++||.+.
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhcc
Confidence 345566666777766654 333322 667777777764 2211 1111678888889888765
No 65
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.00099 Score=46.31 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=9.1
Q ss_pred CcCCCCCcEEEccCCcc
Q 045549 89 LSKGSNLRTLNFNGNEL 105 (134)
Q Consensus 89 ~~~~~~L~~l~l~~n~l 105 (134)
+..++.++.++++.|..
T Consensus 142 l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 142 LDDLPKVTELHMSDNSL 158 (418)
T ss_pred hhcchhhhhhhhccchh
Confidence 33455556666665533
No 66
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.17 E-value=0.016 Score=42.16 Aligned_cols=61 Identities=13% Similarity=0.172 Sum_probs=36.9
Q ss_pred cccEEEcCCC-ccCCCCcccccCCcEEEccCc-ccCCcCCCCCCCccEEEcccCccc--cccCccccCC
Q 045549 12 RDIKIQFGKN-SFDGIKKLPWKNLEYLDFRSN-LLQGLFLDPSSNMKVFLISNNRFT--REIPCLICNL 76 (134)
Q Consensus 12 ~L~~L~l~~n-~l~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~l~~L~l~~n~l~--~~~~~~~~~l 76 (134)
+|+.|.+++| .++.+|..+..+|++|.+++| .+.. . ..+|+.|+++.+.+. +.+|..+..|
T Consensus 73 sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~s-L---P~sLe~L~L~~n~~~~L~~LPssLk~L 137 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISG-L---PESVRSLEIKGSATDSIKNVPNGLTSL 137 (426)
T ss_pred CCcEEEccCCCCcccCCchhhhhhhheEccCcccccc-c---ccccceEEeCCCCCcccccCcchHhhe
Confidence 6888888774 444477666678899999888 4432 2 234666666554421 2455444433
No 67
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.97 E-value=0.0067 Score=26.04 Aligned_cols=22 Identities=5% Similarity=0.134 Sum_probs=16.6
Q ss_pred CCcccEEEcCCCccCCCCcccc
Q 045549 10 VCRDIKIQFGKNSFDGIKKLPW 31 (134)
Q Consensus 10 ~~~L~~L~l~~n~l~~~~~~~~ 31 (134)
+++|+.|++++|.++.+|..++
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4677888888888887777653
No 68
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.97 E-value=0.0067 Score=26.04 Aligned_cols=22 Identities=5% Similarity=0.134 Sum_probs=16.6
Q ss_pred CCcccEEEcCCCccCCCCcccc
Q 045549 10 VCRDIKIQFGKNSFDGIKKLPW 31 (134)
Q Consensus 10 ~~~L~~L~l~~n~l~~~~~~~~ 31 (134)
+++|+.|++++|.++.+|..++
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4677888888888887777653
No 69
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.23 E-value=0.0068 Score=46.98 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=15.2
Q ss_pred CCCCCcEEEccCCccccCc
Q 045549 91 KGSNLRTLNFNGNELVGSV 109 (134)
Q Consensus 91 ~~~~L~~l~l~~n~l~~~~ 109 (134)
.+++|+.||.+++.+.+.+
T Consensus 248 ~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 248 VLPELRFLDCSGTDINEEI 266 (699)
T ss_pred cCccccEEecCCcchhHHH
Confidence 3789999999998887543
No 70
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.50 E-value=0.0097 Score=41.08 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=29.1
Q ss_pred cCcCCCCCcEEEccCCccccCccc----cccCCCCCcEEEcCCCcc
Q 045549 88 TLSKGSNLRTLNFNGNELVGSVPR----SLLNCENLQVVDLGNNKI 129 (134)
Q Consensus 88 ~~~~~~~L~~l~l~~n~l~~~~p~----~~~~l~~L~~L~l~~n~l 129 (134)
.+-.|+.++..+++.|.|....|+ .+.+.+.|..|.+.+|.+
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 445678888888888877655543 355666778888877765
No 71
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.33 E-value=0.049 Score=22.75 Aligned_cols=15 Identities=53% Similarity=0.835 Sum_probs=8.5
Q ss_pred CCCcEEEcCCCcccc
Q 045549 117 ENLQVVDLGNNKIED 131 (134)
Q Consensus 117 ~~L~~L~l~~n~l~~ 131 (134)
++|+.|++++|.|++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 456777777776654
No 72
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=92.47 E-value=0.1 Score=22.54 Aligned_cols=18 Identities=11% Similarity=0.252 Sum_probs=12.6
Q ss_pred cccEEEcCCCccCCCCcc
Q 045549 12 RDIKIQFGKNSFDGIKKL 29 (134)
Q Consensus 12 ~L~~L~l~~n~l~~~~~~ 29 (134)
.|+.|++++|+++.+|+.
T Consensus 3 ~L~~L~vs~N~Lt~LPeL 20 (26)
T smart00364 3 SLKELNVSNNQLTSLPEL 20 (26)
T ss_pred ccceeecCCCccccCccc
Confidence 567777777777776653
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.81 E-value=0.5 Score=28.09 Aligned_cols=98 Identities=26% Similarity=0.380 Sum_probs=48.1
Q ss_pred ccccccccCCcccEEEcCCCccCCCCcccc---cCCcEEEccCcccCCcCC---CCCCCccEEEcccCccccccCccccC
Q 045549 2 LEEEVTQEVCRDIKIQFGKNSFDGIKKLPW---KNLEYLDFRSNLLQGLFL---DPSSNMKVFLISNNRFTREIPCLICN 75 (134)
Q Consensus 2 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~n~l~~~~~---~~l~~l~~L~l~~n~l~~~~~~~~~~ 75 (134)
|....|.+++.++.+.+.++ +..++...+ .+++.+.+..+ +..... ...+.++.+++..+ +. .++
T Consensus 26 I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~-~~-~i~----- 96 (129)
T PF13306_consen 26 IGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN-LKSIGDNAFSNCTNLKNIDIPSN-IT-EIG----- 96 (129)
T ss_dssp E-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST-T-EE-TTTTTT-TTECEEEETTT--B-EEH-----
T ss_pred eChhhccccccccccccccc-ccccceeeeeccccccccccccc-ccccccccccccccccccccCcc-cc-EEc-----
Confidence 45667888889999999885 777777654 47899998763 222222 22678888888654 33 222
Q ss_pred CCCccccccCCccCcCCCCCcEEEccCCccccCccccccCCCCCc
Q 045549 76 LSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQ 120 (134)
Q Consensus 76 l~~L~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~ 120 (134)
...+..+ .++.+.+.. .+...-...|.++++|+
T Consensus 97 ----------~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 97 ----------SSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp ----------TTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred ----------hhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 3356666 777787765 33323345677776653
No 74
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=90.47 E-value=0.29 Score=21.08 Aligned_cols=15 Identities=47% Similarity=0.707 Sum_probs=8.7
Q ss_pred CCCcEEEcCCCcccc
Q 045549 117 ENLQVVDLGNNKIED 131 (134)
Q Consensus 117 ~~L~~L~l~~n~l~~ 131 (134)
.+|+.|++++|+|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 456666666666543
No 75
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=90.20 E-value=0.25 Score=21.53 Aligned_cols=14 Identities=43% Similarity=0.660 Sum_probs=9.8
Q ss_pred CCCcEEEcCCCccc
Q 045549 117 ENLQVVDLGNNKIE 130 (134)
Q Consensus 117 ~~L~~L~l~~n~l~ 130 (134)
++|++|++++|.|+
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35777777777774
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.90 E-value=0.0086 Score=40.44 Aligned_cols=80 Identities=16% Similarity=0.139 Sum_probs=47.4
Q ss_pred cCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCccccccCCccCcCCCCCcEEEccCCccccCc
Q 045549 32 KNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSV 109 (134)
Q Consensus 32 ~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~ 109 (134)
.+.+.|+++.|++-..-... ++.+.-+|++.|.+. ..| .-+++...++.+++..|..+ ..
T Consensus 42 kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~----------------~d~~q~~e~~~~~~~~n~~~-~~ 103 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLP----------------KDAKQQRETVNAASHKNNHS-QQ 103 (326)
T ss_pred ceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hCh----------------hhHHHHHHHHHHHhhccchh-hC
Confidence 66777777777765433333 666777777777665 333 33444444555555555555 55
Q ss_pred cccccCCCCCcEEEcCCCcc
Q 045549 110 PRSLLNCENLQVVDLGNNKI 129 (134)
Q Consensus 110 p~~~~~l~~L~~L~l~~n~l 129 (134)
|-+++..++++.++.-+|.+
T Consensus 104 p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 104 PKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred CccccccCCcchhhhccCcc
Confidence 66666666666666666554
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=70.29 E-value=0.13 Score=34.93 Aligned_cols=71 Identities=13% Similarity=0.028 Sum_probs=51.4
Q ss_pred cCCcccEEEcCCCccCCCCccc--ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc
Q 045549 9 EVCRDIKIQFGKNSFDGIKKLP--WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI 81 (134)
Q Consensus 9 ~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~ 81 (134)
.....+.|+++.|.+-..-+.+ ...+.+++++.|++.. .|.. ...++.+++..|+.+ ..|.++++.++++.
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~-~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKF-LPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhh-ChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 4567788888888876544433 3778889999998765 4444 556777788888888 88888887777666
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.47 E-value=0.68 Score=30.70 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=22.2
Q ss_pred CCCCcEEEccCC-ccccCccccccCCCCCcEEEcCC
Q 045549 92 GSNLRTLNFNGN-ELVGSVPRSLLNCENLQVVDLGN 126 (134)
Q Consensus 92 ~~~L~~l~l~~n-~l~~~~p~~~~~l~~L~~L~l~~ 126 (134)
.++|+.|+++++ +|+..--..+..+++|+.|++.+
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 477888888855 56633334566677777666643
No 79
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=59.63 E-value=6.4 Score=30.16 Aligned_cols=59 Identities=12% Similarity=0.193 Sum_probs=36.6
Q ss_pred ccCCcccEEEcCCCccCCCCccc-----ccCCcEEEccCc--ccCCc--CCCC-CCCccEEEcccCccc
Q 045549 8 QEVCRDIKIQFGKNSFDGIKKLP-----WKNLEYLDFRSN--LLQGL--FLDP-SSNMKVFLISNNRFT 66 (134)
Q Consensus 8 ~~~~~L~~L~l~~n~l~~~~~~~-----~~~L~~L~l~~n--~l~~~--~~~~-l~~l~~L~l~~n~l~ 66 (134)
...+.+..+++++|++..++... ++.++.|+|++| .+... .+.. ...|+.|-+.+|.+.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 35667777888888887655422 488888888888 22211 1111 345777777777665
No 80
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=57.15 E-value=8.1 Score=16.10 Aligned_cols=11 Identities=0% Similarity=-0.142 Sum_probs=6.0
Q ss_pred CcccEEEcCCC
Q 045549 11 CRDIKIQFGKN 21 (134)
Q Consensus 11 ~~L~~L~l~~n 21 (134)
++|+.|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45555555555
No 81
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=37.30 E-value=24 Score=32.51 Aligned_cols=23 Identities=26% Similarity=0.603 Sum_probs=14.4
Q ss_pred ccccccccCCcccEEEcCCCccC
Q 045549 2 LEEEVTQEVCRDIKIQFGKNSFD 24 (134)
Q Consensus 2 ~~~~~~~~~~~L~~L~l~~n~l~ 24 (134)
|+.+.|+.+++|+.|+|++|.+.
T Consensus 10 Lp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 10 IEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred cChHHhccCCCceEEEeeCCccc
Confidence 44555666666666666666664
No 82
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=30.50 E-value=15 Score=26.89 Aligned_cols=57 Identities=14% Similarity=0.065 Sum_probs=28.7
Q ss_pred cCCcccEEEcCCCc-cCC--CCcc--cccCCcEEEccCcc-cCCcCCC----CCCCccEEEcccCcc
Q 045549 9 EVCRDIKIQFGKNS-FDG--IKKL--PWKNLEYLDFRSNL-LQGLFLD----PSSNMKVFLISNNRF 65 (134)
Q Consensus 9 ~~~~L~~L~l~~n~-l~~--~~~~--~~~~L~~L~l~~n~-l~~~~~~----~l~~l~~L~l~~n~l 65 (134)
.+++++.|+++++. +++ +... .+++++.|.+.++. ++...-. .++.|++|+++++..
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 34555666666555 332 1111 13567777766555 3322111 156677777776643
No 83
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=29.34 E-value=36 Score=31.57 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=22.7
Q ss_pred EccCcccCCcCCCC---CCCccEEEcccCccc
Q 045549 38 DFRSNLLQGLFLDP---SSNMKVFLISNNRFT 66 (134)
Q Consensus 38 ~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~ 66 (134)
+|++|+++.+.+.. +.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57889888765543 889999999999776
No 84
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=25.21 E-value=91 Score=14.74 Aligned_cols=8 Identities=38% Similarity=0.480 Sum_probs=3.8
Q ss_pred cCCcEEEc
Q 045549 32 KNLEYLDF 39 (134)
Q Consensus 32 ~~L~~L~l 39 (134)
.+++.|.+
T Consensus 12 ~~l~~L~~ 19 (44)
T PF05725_consen 12 SSLKSLIF 19 (44)
T ss_pred CCCeEEEE
Confidence 34455544
No 85
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=24.73 E-value=27 Score=14.98 Aligned_cols=15 Identities=13% Similarity=0.093 Sum_probs=11.0
Q ss_pred cccCCCCCcEEEcCC
Q 045549 112 SLLNCENLQVVDLGN 126 (134)
Q Consensus 112 ~~~~l~~L~~L~l~~ 126 (134)
.+..+++|+.||...
T Consensus 8 Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 8 VIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHCCccceecccc
Confidence 467788888888653
No 86
>TIGR02167 Liste_lipo_26 bacterial surface protein 26-residue repeat. This model describes a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, L. innocua, Enterococcus faecalis, Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=22.35 E-value=44 Score=14.11 Aligned_cols=12 Identities=25% Similarity=0.628 Sum_probs=5.3
Q ss_pred cCCCCCcEEEcC
Q 045549 114 LNCENLQVVDLG 125 (134)
Q Consensus 114 ~~l~~L~~L~l~ 125 (134)
.++.++..|+++
T Consensus 3 ~~~~~~~~ldls 14 (26)
T TIGR02167 3 SGCSSLTSLDVS 14 (26)
T ss_pred Cccccccccccc
Confidence 344444444443
Done!