Query 045549
Match_columns 134
No_of_seqs 113 out of 3034
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 05:01:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045549.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045549hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.8 6.7E-20 2.3E-24 138.7 10.7 82 53-134 632-721 (768)
2 1w8a_A SLIT protein; signaling 99.8 2E-18 6.7E-23 111.1 12.0 121 13-133 10-142 (192)
3 3m19_A Variable lymphocyte rec 99.8 4.4E-18 1.5E-22 113.5 13.8 127 6-132 54-194 (251)
4 3rgz_A Protein brassinosteroid 99.8 1.6E-18 5.5E-23 131.2 11.3 128 7-134 414-555 (768)
5 1ogq_A PGIP-2, polygalacturona 99.8 1.6E-18 5.4E-23 119.1 10.2 124 10-134 148-285 (313)
6 3e6j_A Variable lymphocyte rec 99.8 7.9E-18 2.7E-22 111.0 12.9 122 11-132 40-174 (229)
7 3rfs_A Internalin B, repeat mo 99.8 9.6E-18 3.3E-22 113.1 13.6 126 8-133 82-221 (272)
8 2v9t_B SLIT homolog 2 protein 99.8 6.6E-18 2.3E-22 110.8 11.9 121 11-131 32-166 (220)
9 4fcg_A Uncharacterized protein 99.8 3.3E-18 1.1E-22 118.3 10.8 63 10-73 103-170 (328)
10 2o6q_A Variable lymphocyte rec 99.8 1.9E-17 6.6E-22 111.4 14.1 126 6-131 56-195 (270)
11 4g8a_A TOLL-like receptor 4; l 99.8 4.6E-18 1.6E-22 125.2 11.9 129 5-133 45-189 (635)
12 3m19_A Variable lymphocyte rec 99.8 2.1E-17 7.1E-22 110.2 13.8 123 11-133 35-171 (251)
13 4fcg_A Uncharacterized protein 99.8 4.6E-18 1.6E-22 117.5 10.8 82 52-134 205-294 (328)
14 2v70_A SLIT-2, SLIT homolog 2 99.8 1.1E-17 3.8E-22 109.7 11.9 121 12-132 33-168 (220)
15 2v70_A SLIT-2, SLIT homolog 2 99.8 1.5E-17 5.1E-22 109.1 12.1 123 12-134 12-146 (220)
16 1ogq_A PGIP-2, polygalacturona 99.8 2.9E-18 1E-22 117.8 9.0 47 86-133 214-260 (313)
17 2o6s_A Variable lymphocyte rec 99.8 4E-17 1.4E-21 105.9 13.7 124 11-134 28-165 (208)
18 2o6q_A Variable lymphocyte rec 99.7 4.6E-17 1.6E-21 109.6 13.7 130 2-131 76-219 (270)
19 3rfs_A Internalin B, repeat mo 99.7 3.9E-17 1.3E-21 110.1 13.3 127 7-133 59-197 (272)
20 1ozn_A Reticulon 4 receptor; N 99.7 3.6E-17 1.2E-21 110.7 12.5 43 89-131 173-215 (285)
21 2v9t_B SLIT homolog 2 protein 99.7 4.5E-17 1.6E-21 106.8 12.4 121 13-133 13-144 (220)
22 1ozn_A Reticulon 4 receptor; N 99.7 4.5E-17 1.5E-21 110.3 12.3 125 7-131 52-191 (285)
23 3vq2_A TLR4, TOLL-like recepto 99.7 6.2E-17 2.1E-21 119.3 12.8 123 11-133 32-169 (606)
24 2z62_A TOLL-like receptor 4, v 99.7 9.5E-17 3.2E-21 108.2 12.0 127 6-132 22-164 (276)
25 3g39_A Variable lymphocyte rec 99.7 9.6E-17 3.3E-21 101.4 11.3 105 12-132 10-117 (170)
26 1p9a_G Platelet glycoprotein I 99.7 1.4E-16 4.7E-21 108.5 12.6 124 7-130 51-185 (290)
27 2o6r_A Variable lymphocyte rec 99.7 1.6E-16 5.4E-21 100.8 11.8 121 12-132 8-139 (177)
28 3e6j_A Variable lymphocyte rec 99.7 2E-16 6.9E-21 104.3 12.6 123 10-133 18-151 (229)
29 2wfh_A SLIT homolog 2 protein 99.7 2.4E-16 8.1E-21 101.5 11.9 118 14-131 13-140 (193)
30 2z66_A Variable lymphocyte rec 99.7 1.9E-16 6.4E-21 108.1 11.7 44 88-131 194-237 (306)
31 1p9a_G Platelet glycoprotein I 99.7 2.3E-16 7.9E-21 107.4 12.0 121 11-132 31-163 (290)
32 3v47_A TOLL-like receptor 5B a 99.7 2.2E-16 7.4E-21 112.8 12.2 124 11-134 275-412 (455)
33 2r9u_A Variable lymphocyte rec 99.7 6E-16 2E-20 98.2 11.7 104 12-131 13-119 (174)
34 1ziw_A TOLL-like receptor 3; i 99.7 5.4E-16 1.8E-20 115.7 12.9 122 11-132 25-160 (680)
35 3zyj_A Leucine-rich repeat-con 99.7 6.4E-16 2.2E-20 110.4 12.7 128 5-132 82-246 (440)
36 2z62_A TOLL-like receptor 4, v 99.7 1.8E-16 6.3E-21 106.8 9.2 127 5-131 46-191 (276)
37 2o6s_A Variable lymphocyte rec 99.7 1.5E-15 5E-20 98.5 13.1 122 12-133 8-140 (208)
38 2z66_A Variable lymphocyte rec 99.7 5.2E-16 1.8E-20 105.9 11.5 127 6-132 121-263 (306)
39 2id5_A Lingo-1, leucine rich r 99.7 4.7E-16 1.6E-20 111.8 11.4 128 5-132 50-191 (477)
40 1xku_A Decorin; proteoglycan, 99.7 6.9E-16 2.4E-20 106.3 11.5 61 6-66 71-134 (330)
41 2xot_A Amphoterin-induced prot 99.7 7.8E-16 2.7E-20 107.5 11.8 120 12-132 40-178 (361)
42 2z63_A TOLL-like receptor 4, v 99.7 7.5E-16 2.6E-20 112.6 12.1 122 11-132 28-164 (570)
43 3zyi_A Leucine-rich repeat-con 99.7 9.7E-16 3.3E-20 109.8 12.2 128 5-132 93-257 (452)
44 3v47_A TOLL-like receptor 5B a 99.7 6E-16 2.1E-20 110.5 11.1 128 7-134 26-171 (455)
45 3zyj_A Leucine-rich repeat-con 99.7 1.2E-15 3.9E-20 109.0 12.3 128 4-133 105-271 (440)
46 4b8c_D Glucose-repressible alc 99.7 1.1E-16 3.8E-21 120.7 7.2 110 5-133 218-332 (727)
47 4ezg_A Putative uncharacterize 99.7 4.4E-16 1.5E-20 100.4 9.0 120 10-131 43-173 (197)
48 3vq2_A TLR4, TOLL-like recepto 99.7 3.3E-16 1.1E-20 115.4 9.4 99 32-130 424-534 (606)
49 2z63_A TOLL-like receptor 4, v 99.7 8.1E-16 2.8E-20 112.4 11.2 127 8-134 393-535 (570)
50 3zyi_A Leucine-rich repeat-con 99.7 1.6E-15 5.4E-20 108.7 12.5 127 5-133 117-282 (452)
51 2ell_A Acidic leucine-rich nuc 99.7 7.4E-16 2.5E-20 96.8 9.2 121 9-131 22-161 (168)
52 4eco_A Uncharacterized protein 99.7 7.6E-17 2.6E-21 120.0 5.2 123 7-130 202-366 (636)
53 3t6q_A CD180 antigen; protein- 99.6 1.6E-15 5.4E-20 111.8 11.8 77 5-81 272-354 (606)
54 4eco_A Uncharacterized protein 99.6 1.9E-15 6.6E-20 112.4 12.1 124 9-134 431-582 (636)
55 2z81_A CD282 antigen, TOLL-lik 99.6 3.8E-16 1.3E-20 113.9 8.1 124 11-134 26-165 (549)
56 1xku_A Decorin; proteoglycan, 99.6 3.1E-15 1.1E-19 103.1 12.3 124 7-131 141-277 (330)
57 4ezg_A Putative uncharacterize 99.6 7.2E-16 2.4E-20 99.4 8.5 123 7-132 62-196 (197)
58 1ziw_A TOLL-like receptor 3; i 99.6 2.4E-15 8.4E-20 112.1 12.3 132 3-134 41-188 (680)
59 2ft3_A Biglycan; proteoglycan, 99.6 1.9E-15 6.6E-20 104.2 10.7 125 7-132 143-279 (332)
60 3oja_B Anopheles plasmodium-re 99.6 3.1E-15 1E-19 110.6 12.4 43 89-131 250-292 (597)
61 2z7x_B TOLL-like receptor 1, v 99.6 6.8E-16 2.3E-20 112.0 8.8 114 15-130 4-128 (520)
62 2z80_A TOLL-like receptor 2, v 99.6 5.8E-16 2E-20 107.7 8.1 120 12-131 53-188 (353)
63 3o6n_A APL1; leucine-rich repe 99.6 1.8E-15 6.1E-20 106.4 10.6 122 10-131 44-179 (390)
64 3t6q_A CD180 antigen; protein- 99.6 3.4E-15 1.2E-19 110.0 12.5 125 7-131 372-514 (606)
65 4g8a_A TOLL-like receptor 4; l 99.6 2.1E-15 7.3E-20 111.0 11.4 118 14-131 34-162 (635)
66 1wwl_A Monocyte differentiatio 99.6 7E-16 2.4E-20 105.8 8.2 59 8-66 118-186 (312)
67 2z81_A CD282 antigen, TOLL-lik 99.6 1.7E-15 5.9E-20 110.4 10.7 125 7-133 383-513 (549)
68 3oja_B Anopheles plasmodium-re 99.6 2.4E-15 8.3E-20 111.1 11.1 122 10-131 50-185 (597)
69 2z80_A TOLL-like receptor 2, v 99.6 5.2E-16 1.8E-20 107.9 7.0 125 5-130 70-211 (353)
70 2id5_A Lingo-1, leucine rich r 99.6 1.4E-15 4.8E-20 109.4 9.4 128 4-131 73-214 (477)
71 2xot_A Amphoterin-induced prot 99.6 3.9E-15 1.3E-19 104.0 11.4 121 12-132 19-151 (361)
72 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 3.1E-15 1.1E-19 109.7 11.0 119 11-131 31-160 (562)
73 2ft3_A Biglycan; proteoglycan, 99.6 8.4E-15 2.9E-19 101.0 12.2 119 11-131 33-161 (332)
74 2je0_A Acidic leucine-rich nuc 99.6 2.3E-15 8E-20 92.8 8.4 108 8-132 14-128 (149)
75 2xwt_C Thyrotropin receptor; s 99.6 2.9E-15 9.8E-20 99.1 9.4 118 12-130 32-169 (239)
76 2xwt_C Thyrotropin receptor; s 99.6 2E-15 6.9E-20 99.8 8.6 125 7-131 76-219 (239)
77 1a9n_A U2A', U2A'; complex (nu 99.6 1.4E-15 4.6E-20 96.4 7.2 122 7-130 15-153 (176)
78 3o6n_A APL1; leucine-rich repe 99.6 6.9E-15 2.4E-19 103.4 11.3 127 2-131 60-200 (390)
79 4ecn_A Leucine-rich repeat pro 99.6 6.8E-16 2.3E-20 118.2 6.6 121 8-130 445-608 (876)
80 3j0a_A TOLL-like receptor 5; m 99.6 8.5E-15 2.9E-19 111.9 11.6 128 6-133 19-164 (844)
81 3o53_A Protein LRIM1, AGAP0063 99.6 1.8E-15 6E-20 104.0 7.0 118 10-130 119-250 (317)
82 3oja_A Leucine-rich immune mol 99.6 2.1E-15 7.3E-20 109.2 7.6 40 91-131 189-228 (487)
83 1wwl_A Monocyte differentiatio 99.6 1.4E-15 4.9E-20 104.2 6.4 124 9-133 93-244 (312)
84 1h6u_A Internalin H; cell adhe 99.6 2E-14 6.8E-19 98.5 11.6 59 8-66 60-120 (308)
85 3oja_A Leucine-rich immune mol 99.6 1.8E-15 6.2E-20 109.5 6.5 78 53-132 120-206 (487)
86 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 1E-14 3.5E-19 106.9 10.5 123 9-132 375-512 (562)
87 4ecn_A Leucine-rich repeat pro 99.6 1.6E-14 5.5E-19 110.7 11.8 122 11-134 673-822 (876)
88 1h6u_A Internalin H; cell adhe 99.6 2.1E-14 7.2E-19 98.4 11.2 121 7-132 81-210 (308)
89 1h6t_A Internalin B; cell adhe 99.6 3.1E-14 1.1E-18 96.8 11.4 119 8-131 65-192 (291)
90 1dce_A Protein (RAB geranylger 99.6 2E-14 6.7E-19 105.9 11.0 104 12-134 442-550 (567)
91 4glp_A Monocyte differentiatio 99.6 3.3E-15 1.1E-19 102.3 6.1 37 9-45 143-182 (310)
92 3cvr_A Invasion plasmid antige 99.6 1.8E-14 6.2E-19 106.1 10.2 113 12-134 121-247 (571)
93 3j0a_A TOLL-like receptor 5; m 99.6 9.6E-15 3.3E-19 111.6 9.1 127 5-131 42-188 (844)
94 2z7x_B TOLL-like receptor 1, v 99.6 2.1E-14 7.1E-19 104.2 9.7 99 32-131 374-482 (520)
95 1xeu_A Internalin C; cellular 99.6 4.2E-14 1.5E-18 94.9 10.3 118 8-131 38-164 (263)
96 1xeu_A Internalin C; cellular 99.5 6.1E-14 2.1E-18 94.2 10.8 121 7-132 59-187 (263)
97 3o53_A Protein LRIM1, AGAP0063 99.5 1.7E-14 5.7E-19 99.1 7.8 118 12-131 100-228 (317)
98 1h6t_A Internalin B; cell adhe 99.5 4.7E-14 1.6E-18 96.0 9.6 120 7-131 86-214 (291)
99 4glp_A Monocyte differentiatio 99.5 1.3E-14 4.5E-19 99.3 6.6 123 8-130 114-264 (310)
100 1m9s_A Internalin B; cell inva 99.5 1.6E-13 5.6E-18 101.7 12.6 120 7-131 61-189 (605)
101 1w8a_A SLIT protein; signaling 99.5 1.7E-13 5.9E-18 87.9 11.0 99 12-110 30-143 (192)
102 4fmz_A Internalin; leucine ric 99.5 9.7E-14 3.3E-18 96.0 10.5 99 32-133 221-327 (347)
103 3g06_A SSPH2 (leucine-rich rep 99.5 1.3E-13 4.5E-18 102.4 11.2 116 11-133 181-300 (622)
104 4fmz_A Internalin; leucine ric 99.5 7.6E-14 2.6E-18 96.6 9.0 120 7-130 217-346 (347)
105 2je0_A Acidic leucine-rich nuc 99.5 2.9E-14 9.8E-19 87.9 5.7 106 6-126 37-149 (149)
106 1m9s_A Internalin B; cell inva 99.5 2.5E-13 8.6E-18 100.7 11.4 121 7-132 83-212 (605)
107 3cvr_A Invasion plasmid antige 99.5 4.9E-13 1.7E-17 98.5 12.4 110 12-131 60-174 (571)
108 1o6v_A Internalin A; bacterial 99.5 4E-13 1.4E-17 96.6 11.3 40 90-131 350-389 (466)
109 3bz5_A Internalin-J, INLJ; leu 99.5 1.2E-12 4E-17 94.2 13.2 57 10-66 41-98 (457)
110 3bz5_A Internalin-J, INLJ; leu 99.5 1.6E-12 5.5E-17 93.5 13.5 40 89-131 208-247 (457)
111 1o6v_A Internalin A; bacterial 99.5 6.3E-13 2.1E-17 95.5 11.1 40 90-131 284-323 (466)
112 1jl5_A Outer protein YOPM; leu 99.4 2.1E-12 7.3E-17 92.8 13.0 36 94-131 216-251 (454)
113 1jl5_A Outer protein YOPM; leu 99.4 2.2E-12 7.6E-17 92.7 12.6 116 8-131 150-271 (454)
114 4b8c_D Glucose-repressible alc 99.4 1.3E-14 4.4E-19 109.5 1.0 114 2-134 239-358 (727)
115 2wfh_A SLIT homolog 2 protein 99.4 1.7E-12 5.8E-17 83.4 10.7 98 34-132 12-117 (193)
116 3g06_A SSPH2 (leucine-rich rep 99.4 2.9E-12 9.9E-17 95.3 12.7 54 11-66 61-114 (622)
117 2ell_A Acidic leucine-rich nuc 99.4 6.1E-13 2.1E-17 83.4 7.7 100 31-133 23-136 (168)
118 2ifg_A High affinity nerve gro 99.4 1.6E-12 5.4E-17 90.1 9.7 100 14-131 11-117 (347)
119 4ay9_X Follicle-stimulating ho 99.4 9.1E-13 3.1E-17 91.6 8.2 40 92-132 176-217 (350)
120 2o6r_A Variable lymphocyte rec 99.4 8.6E-12 2.9E-16 78.8 10.7 101 33-133 8-116 (177)
121 1ds9_A Outer arm dynein; leuci 99.4 4.9E-15 1.7E-19 95.5 -4.7 58 7-66 44-106 (198)
122 1dce_A Protein (RAB geranylger 99.4 4.7E-12 1.6E-16 93.3 9.8 102 7-124 459-567 (567)
123 3g39_A Variable lymphocyte rec 99.3 1.1E-11 3.8E-16 78.0 9.6 86 32-133 9-94 (170)
124 4ay9_X Follicle-stimulating ho 99.3 7.3E-12 2.5E-16 87.1 9.1 93 14-106 12-117 (350)
125 1a9n_A U2A', U2A'; complex (nu 99.3 7.3E-12 2.5E-16 79.1 7.6 96 32-131 19-127 (176)
126 2ca6_A RAN GTPase-activating p 99.3 1.8E-13 6.1E-18 96.1 -0.3 44 88-131 211-258 (386)
127 2r9u_A Variable lymphocyte rec 99.3 2.5E-11 8.6E-16 76.7 9.6 85 33-133 13-97 (174)
128 2ast_B S-phase kinase-associat 99.3 3.3E-13 1.1E-17 92.9 -1.2 119 10-128 92-233 (336)
129 2ast_B S-phase kinase-associat 99.2 7E-13 2.4E-17 91.3 0.4 121 7-127 114-257 (336)
130 2ca6_A RAN GTPase-activating p 99.2 7E-13 2.4E-17 93.1 0.2 122 11-132 159-318 (386)
131 3goz_A Leucine-rich repeat-con 99.2 1.6E-12 5.4E-17 90.8 0.9 14 53-66 109-122 (362)
132 3goz_A Leucine-rich repeat-con 99.2 2.1E-12 7.1E-17 90.1 0.8 124 8-131 19-181 (362)
133 2ifg_A High affinity nerve gro 99.1 1.7E-10 5.7E-15 79.9 8.2 82 35-133 11-96 (347)
134 1z7x_W Ribonuclease inhibitor; 99.1 1.6E-12 5.6E-17 92.8 -2.0 122 10-131 255-412 (461)
135 1ds9_A Outer arm dynein; leuci 99.1 6.1E-13 2.1E-17 85.6 -5.2 108 6-131 65-186 (198)
136 3sb4_A Hypothetical leucine ri 99.0 2.2E-09 7.6E-14 73.9 9.5 78 53-131 226-311 (329)
137 3sb4_A Hypothetical leucine ri 99.0 1.2E-09 4.3E-14 75.2 8.1 92 32-124 226-328 (329)
138 1z7x_W Ribonuclease inhibitor; 99.0 2.1E-11 7.3E-16 87.0 -1.8 74 8-81 25-117 (461)
139 3un9_A NLR family member X1; l 98.9 3.6E-11 1.2E-15 84.5 -1.8 121 11-131 101-253 (372)
140 3ogk_B Coronatine-insensitive 98.9 3.5E-09 1.2E-13 77.8 5.9 121 8-130 161-306 (592)
141 3un9_A NLR family member X1; l 98.8 1.9E-10 6.6E-15 80.8 -2.8 122 10-131 71-225 (372)
142 1io0_A Tropomodulin; LRR prote 98.7 7.5E-10 2.6E-14 70.6 -1.2 113 7-131 32-165 (185)
143 3ogk_B Coronatine-insensitive 98.6 3.3E-08 1.1E-12 72.6 4.0 120 6-125 187-326 (592)
144 3rw6_A Nuclear RNA export fact 98.5 1.5E-07 5.2E-12 63.2 4.7 76 32-123 170-257 (267)
145 4fdw_A Leucine rich hypothetic 98.5 1.4E-06 4.7E-11 61.8 9.7 124 3-130 218-358 (401)
146 4fdw_A Leucine rich hypothetic 98.4 2.4E-06 8.3E-11 60.5 9.9 60 2-62 171-235 (401)
147 3rw6_A Nuclear RNA export fact 98.3 8.8E-07 3E-11 59.5 5.4 66 52-133 169-236 (267)
148 2p1m_B Transport inhibitor res 98.3 1.5E-07 5E-12 69.1 1.0 37 91-127 287-324 (594)
149 2p1m_B Transport inhibitor res 98.2 1.9E-07 6.4E-12 68.6 0.6 59 9-67 103-170 (594)
150 2ra8_A Uncharacterized protein 98.1 8.8E-07 3E-11 62.0 1.6 40 92-131 278-321 (362)
151 1io0_A Tropomodulin; LRR prote 98.1 3.9E-07 1.3E-11 57.9 -0.4 88 32-131 36-137 (185)
152 2ra8_A Uncharacterized protein 98.0 5E-06 1.7E-10 58.2 4.7 123 9-131 137-293 (362)
153 3rfe_A Platelet glycoprotein I 97.9 4.9E-05 1.7E-09 45.6 6.2 53 14-66 11-68 (130)
154 1pgv_A TMD-1, tropomodulin TMD 97.4 2.9E-05 1E-09 49.8 0.6 111 8-130 38-170 (197)
155 3rfe_A Platelet glycoprotein I 97.4 0.00058 2E-08 40.8 6.1 55 35-105 11-67 (130)
156 4fs7_A Uncharacterized protein 97.4 0.0024 8.3E-08 44.8 10.1 119 6-127 248-376 (394)
157 3e4g_A ATP synthase subunit S, 97.3 4.2E-05 1.4E-09 48.2 0.2 34 94-127 115-149 (176)
158 4fs7_A Uncharacterized protein 97.2 0.0013 4.6E-08 46.1 7.4 120 2-125 62-193 (394)
159 4gt6_A Cell surface protein; l 97.1 0.0033 1.1E-07 44.1 8.6 73 5-80 259-337 (394)
160 4h09_A Hypothetical leucine ri 97.1 0.0036 1.2E-07 43.6 8.2 29 52-80 285-313 (379)
161 1pgv_A TMD-1, tropomodulin TMD 96.2 0.0009 3.1E-08 42.9 0.2 84 32-127 41-136 (197)
162 4h09_A Hypothetical leucine ri 95.6 0.054 1.8E-06 37.5 7.1 57 6-63 258-320 (379)
163 4gt6_A Cell surface protein; l 95.3 0.17 5.8E-06 35.3 9.0 75 52-128 287-368 (394)
164 3e4g_A ATP synthase subunit S, 94.3 0.064 2.2E-06 33.7 4.3 64 52-131 60-129 (176)
165 2lz0_A Uncharacterized protein 63.3 9.4 0.00032 21.2 3.4 14 88-101 38-51 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.82 E-value=6.7e-20 Score=138.68 Aligned_cols=82 Identities=24% Similarity=0.370 Sum_probs=60.7
Q ss_pred CCccEEEcccCccccccCccccCCCCccc--------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEc
Q 045549 53 SNMKVFLISNNRFTREIPCLICNLSTIEI--------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDL 124 (134)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l 124 (134)
+++++||+++|++++.+|..++.++.|+. .+.+|..++.+++|+.|++++|+++|.+|..+.++++|++|++
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence 34666777777777777777777666665 4467777777777777787777777777777777777888888
Q ss_pred CCCcccccCC
Q 045549 125 GNNKIEDILH 134 (134)
Q Consensus 125 ~~n~l~~~~~ 134 (134)
++|+++|.||
T Consensus 712 s~N~l~g~iP 721 (768)
T 3rgz_A 712 SNNNLSGPIP 721 (768)
T ss_dssp CSSEEEEECC
T ss_pred cCCcccccCC
Confidence 8888877776
No 2
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.79 E-value=2e-18 Score=111.12 Aligned_cols=121 Identities=17% Similarity=0.104 Sum_probs=100.3
Q ss_pred ccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCC--C--CCCccEEEcccCccccccCccccCCCCccc-------
Q 045549 13 DIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLD--P--SSNMKVFLISNNRFTREIPCLICNLSTIEI------- 81 (134)
Q Consensus 13 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~--~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~------- 81 (134)
-+.+++++|.++.+|..+..+++.|++++|.+++..+. . ++.|++|++++|.+++..|..+..+.+|+.
T Consensus 10 ~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 36788888888888887777888888888888877654 2 788888888888888777888888777776
Q ss_pred -cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccC
Q 045549 82 -PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDIL 133 (134)
Q Consensus 82 -~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 133 (134)
....+..++.+++|+.|++++|++++..|..+..+++|+.|++++|.+++..
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 2334556888999999999999999888889999999999999999998653
No 3
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.79 E-value=4.4e-18 Score=113.45 Aligned_cols=127 Identities=17% Similarity=0.197 Sum_probs=83.7
Q ss_pred ccccCCcccEEEcCCCccCCCCccc---ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCc
Q 045549 6 VTQEVCRDIKIQFGKNSFDGIKKLP---WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTI 79 (134)
Q Consensus 6 ~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L 79 (134)
.+..+++|+.|++++|.+++++... .++|++|++++|.+++..+.. +++|++|++++|++++..+..+..+.+|
T Consensus 54 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 133 (251)
T 3m19_A 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL 133 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc
Confidence 4556677777777777776654432 267777777777777655443 6677777777777775555555666666
Q ss_pred cc-------cccCCc-cCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549 80 EI-------PWPIPE-TLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132 (134)
Q Consensus 80 ~~-------~~~~~~-~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 132 (134)
+. ...++. .++.+++|+.|++++|.+++..+..+..+++|+.+++++|.+++.
T Consensus 134 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 134 KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 55 223333 566777788888888877755455677777788888888777653
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.78 E-value=1.6e-18 Score=131.19 Aligned_cols=128 Identities=22% Similarity=0.364 Sum_probs=95.3
Q ss_pred cccCCcccEEEcCCCccCC-CCcccc--cCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCcc
Q 045549 7 TQEVCRDIKIQFGKNSFDG-IKKLPW--KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIE 80 (134)
Q Consensus 7 ~~~~~~L~~L~l~~n~l~~-~~~~~~--~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~ 80 (134)
+..+++|+.|++++|.+++ +|..+. ++|+.|++++|.+++..|.. +++|++|++++|++++.+|..+..+++|+
T Consensus 414 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 493 (768)
T 3rgz_A 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493 (768)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred HhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCC
Confidence 3456677777777777765 555442 67777777777777666654 67788888888887777777777777776
Q ss_pred c--------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccCC
Q 045549 81 I--------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDILH 134 (134)
Q Consensus 81 ~--------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~ 134 (134)
. .+.+|.+++.+++|+.|++++|.+.+.+|..++++++|+.|++++|.++|.+|
T Consensus 494 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred EEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 6 34677777888888888888888887788888888888888888888887776
No 5
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.78 E-value=1.6e-18 Score=119.11 Aligned_cols=124 Identities=16% Similarity=0.179 Sum_probs=71.8
Q ss_pred CCcccEEEcCCCccCC-CCcccc--c-CCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc-
Q 045549 10 VCRDIKIQFGKNSFDG-IKKLPW--K-NLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI- 81 (134)
Q Consensus 10 ~~~L~~L~l~~n~l~~-~~~~~~--~-~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~- 81 (134)
+++|++|++++|.+++ +|..+. . +++.|++++|.+++..|.. +. |++|++++|.+++..|..+..+++|+.
T Consensus 148 l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 226 (313)
T 1ogq_A 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKI 226 (313)
T ss_dssp CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEE
T ss_pred CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEE
Confidence 3444444444444432 333332 1 4444444444444333332 22 555555555555455555555555544
Q ss_pred ------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccCC
Q 045549 82 ------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDILH 134 (134)
Q Consensus 82 ------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~ 134 (134)
....+..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.++|.+|
T Consensus 227 ~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp ECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred ECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence 11123336667888888888888887888888888888888888888888776
No 6
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=7.9e-18 Score=111.02 Aligned_cols=122 Identities=16% Similarity=0.134 Sum_probs=99.8
Q ss_pred CcccEEEcCCCccCCCCc-cc--ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc---
Q 045549 11 CRDIKIQFGKNSFDGIKK-LP--WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI--- 81 (134)
Q Consensus 11 ~~L~~L~l~~n~l~~~~~-~~--~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--- 81 (134)
++|+.|++++|.+++++. .+ .++|+.|++++|.++...+.. ++.|++|++++|++++..+..+..+.+|+.
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 688999999999988644 33 388999999999998765543 789999999999999666666777777776
Q ss_pred ----cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549 82 ----PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132 (134)
Q Consensus 82 ----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 132 (134)
...+|..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.+++.
T Consensus 120 s~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 120 CCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred cCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 446788888899999999999999955456788999999999999988753
No 7
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.77 E-value=9.6e-18 Score=113.06 Aligned_cols=126 Identities=17% Similarity=0.113 Sum_probs=74.4
Q ss_pred ccCCcccEEEcCCCccCCCCccc---ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc
Q 045549 8 QEVCRDIKIQFGKNSFDGIKKLP---WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI 81 (134)
Q Consensus 8 ~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~ 81 (134)
..+++|++|++++|.+++++... .++|++|++++|.+++..+.. +++|++|++++|.+++..+..+..+++|+.
T Consensus 82 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 161 (272)
T 3rfs_A 82 KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTE 161 (272)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCE
Confidence 34556666666666665544432 256666666666666554432 566666666666666444444555555554
Q ss_pred --------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccC
Q 045549 82 --------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDIL 133 (134)
Q Consensus 82 --------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 133 (134)
....+..++.+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..
T Consensus 162 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 221 (272)
T 3rfs_A 162 LDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 221 (272)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred EECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC
Confidence 1222333566677777777777777555555667777777777777666544
No 8
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=6.6e-18 Score=110.80 Aligned_cols=121 Identities=17% Similarity=0.210 Sum_probs=92.3
Q ss_pred CcccEEEcCCCccCCCCccc---ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc---
Q 045549 11 CRDIKIQFGKNSFDGIKKLP---WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI--- 81 (134)
Q Consensus 11 ~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--- 81 (134)
++++.|++++|.+++++... +++|+.|++++|++++..+.. +++|++|++++|+++...+..+..+.+|+.
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 47888888888888766543 278888888888888776654 788888888888888554555677777766
Q ss_pred -----cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549 82 -----PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 82 -----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
....+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.+..
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 23345677888889999999998886555678888889999998888753
No 9
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.77 E-value=3.3e-18 Score=118.28 Aligned_cols=63 Identities=14% Similarity=0.166 Sum_probs=32.9
Q ss_pred CCcccEEEcCCCccCCCCccc--ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccc
Q 045549 10 VCRDIKIQFGKNSFDGIKKLP--WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLI 73 (134)
Q Consensus 10 ~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~ 73 (134)
+++|++|++++|.++.+|..+ .++|++|++++|.++.. |.. +++|++|++++|++.+.+|..+
T Consensus 103 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~~~~~~p~~~ 170 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRAL-PASIASLNRLRELSIRACPELTELPEPL 170 (328)
T ss_dssp GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCC-CGGGGGCTTCCEEEEEEETTCCCCCSCS
T ss_pred CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccC-cHHHhcCcCCCEEECCCCCCccccChhH
Confidence 555666666666655555543 25556666666555532 222 4555555555554444444443
No 10
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=1.9e-17 Score=111.41 Aligned_cols=126 Identities=19% Similarity=0.251 Sum_probs=61.4
Q ss_pred ccccCCcccEEEcCCCccCCCCcccc---cCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCc
Q 045549 6 VTQEVCRDIKIQFGKNSFDGIKKLPW---KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTI 79 (134)
Q Consensus 6 ~~~~~~~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L 79 (134)
.+..+++|++|++++|.++.++...+ ++|++|++++|.+++..+.. +++|++|++++|.+++..+..+..+++|
T Consensus 56 ~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 135 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135 (270)
T ss_dssp SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC
Confidence 34455556666666655555544332 55555555555555443322 4555555555555554444444444444
Q ss_pred cc-------cccCCc-cCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549 80 EI-------PWPIPE-TLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 80 ~~-------~~~~~~-~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
+. ...++. .++.+++|+.|++++|.+++..+..+.++++|+.|++++|.+++
T Consensus 136 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence 44 111222 24445555555555555553323334455555555555555443
No 11
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.77 E-value=4.6e-18 Score=125.19 Aligned_cols=129 Identities=18% Similarity=0.265 Sum_probs=107.2
Q ss_pred cccccCC-cccEEEcCCCccCCCCccc---ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCC
Q 045549 5 EVTQEVC-RDIKIQFGKNSFDGIKKLP---WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLS 77 (134)
Q Consensus 5 ~~~~~~~-~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~ 77 (134)
++|+++| ++++|++++|.+++++... +++|++|++++|.++++.+.. +++|++|++++|++++..+..|..+.
T Consensus 45 ~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 45 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 124 (635)
T ss_dssp SCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred ccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence 4566665 7999999999999977643 389999999999999876654 89999999999999966667788888
Q ss_pred Cccc-------cccCC-ccCcCCCCCcEEEccCCcccc-CccccccCCCCCcEEEcCCCcccccC
Q 045549 78 TIEI-------PWPIP-ETLSKGSNLRTLNFNGNELVG-SVPRSLLNCENLQVVDLGNNKIEDIL 133 (134)
Q Consensus 78 ~L~~-------~~~~~-~~~~~~~~L~~l~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~ 133 (134)
+|+. ...++ ..++.+++|+.|++++|.+++ ..|..+..+++|+.|++++|++++..
T Consensus 125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 125 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence 8887 23344 468899999999999999985 35778999999999999999998753
No 12
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.76 E-value=2.1e-17 Score=110.20 Aligned_cols=123 Identities=17% Similarity=0.269 Sum_probs=100.3
Q ss_pred CcccEEEcCCCccCCCCccc---ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc---
Q 045549 11 CRDIKIQFGKNSFDGIKKLP---WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI--- 81 (134)
Q Consensus 11 ~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--- 81 (134)
+.++.|++++|.+++++... +++|++|++++|.+++..+.. +++|++|++++|++++..+..+..+.+|+.
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 47889999999998865543 388999999999999877654 889999999999999766677788877776
Q ss_pred ----cccCC-ccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccC
Q 045549 82 ----PWPIP-ETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDIL 133 (134)
Q Consensus 82 ----~~~~~-~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 133 (134)
...++ ..++.+++|+.|++++|.+++..+..+.++++|+.|++++|.+++..
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 22344 34688999999999999999555557999999999999999998754
No 13
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.76 E-value=4.6e-18 Score=117.54 Aligned_cols=82 Identities=18% Similarity=0.193 Sum_probs=50.0
Q ss_pred CCCccEEEcccCccccccCccccCCCCccc--------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEE
Q 045549 52 SSNMKVFLISNNRFTREIPCLICNLSTIEI--------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVD 123 (134)
Q Consensus 52 l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ 123 (134)
+++|++|++++|.++ .+|..+..+++|+. .+.+|..++.+++|+.|++++|.+.+.+|..+.++++|+.|+
T Consensus 205 l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 283 (328)
T 4fcg_A 205 LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283 (328)
T ss_dssp CTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEE
T ss_pred CCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEe
Confidence 445555555555555 34444554444444 334556666667777777777666666666677777777777
Q ss_pred cCCCcccccCC
Q 045549 124 LGNNKIEDILH 134 (134)
Q Consensus 124 l~~n~l~~~~~ 134 (134)
+++|.+.+.+|
T Consensus 284 L~~n~~~~~iP 294 (328)
T 4fcg_A 284 LRGCVNLSRLP 294 (328)
T ss_dssp CTTCTTCCCCC
T ss_pred CCCCCchhhcc
Confidence 77777666655
No 14
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=1.1e-17 Score=109.73 Aligned_cols=121 Identities=15% Similarity=0.212 Sum_probs=97.1
Q ss_pred cccEEEcCCCccCCC-Cccc---ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc---
Q 045549 12 RDIKIQFGKNSFDGI-KKLP---WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI--- 81 (134)
Q Consensus 12 ~L~~L~l~~n~l~~~-~~~~---~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--- 81 (134)
.++.|++++|.++++ +... +++|+.|++++|.+++..+.. +++|++|++++|.+++..+..+..+++|+.
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 567889999998885 4332 388999999999988876643 888999999999998777777888887776
Q ss_pred -----cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549 82 -----PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132 (134)
Q Consensus 82 -----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 132 (134)
....|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++.
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 233467788889999999999999976688889999999999999988753
No 15
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=1.5e-17 Score=109.11 Aligned_cols=123 Identities=14% Similarity=0.112 Sum_probs=106.4
Q ss_pred cccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC----CCCccEEEcccCccccccCccccCCCCccc------
Q 045549 12 RDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP----SSNMKVFLISNNRFTREIPCLICNLSTIEI------ 81 (134)
Q Consensus 12 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~----l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~------ 81 (134)
.-+.+++++|.++.+|..+...++.|++++|.+++..+.. +++|++|++++|.+++..+..+..+.+|+.
T Consensus 12 ~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 12 EGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 3468999999999999988888999999999999875542 899999999999999777778988888877
Q ss_pred --cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccCC
Q 045549 82 --PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDILH 134 (134)
Q Consensus 82 --~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~ 134 (134)
....+..++.+++|+.|++++|.+++..|..+.++++|+.|++++|.+++..|
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 146 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH
Confidence 22334568899999999999999997778899999999999999999988754
No 16
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.76 E-value=2.9e-18 Score=117.75 Aligned_cols=47 Identities=23% Similarity=0.288 Sum_probs=22.7
Q ss_pred CccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccC
Q 045549 86 PETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDIL 133 (134)
Q Consensus 86 ~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 133 (134)
|..++.+++|+.|++++|.+++..|. +..+++|+.|++++|.++|.+
T Consensus 214 ~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~ 260 (313)
T 1ogq_A 214 SVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTL 260 (313)
T ss_dssp GGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECC
T ss_pred CHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcC
Confidence 33444445555555555555433222 444555555555555555444
No 17
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.76 E-value=4e-17 Score=105.91 Aligned_cols=124 Identities=17% Similarity=0.156 Sum_probs=100.2
Q ss_pred CcccEEEcCCCccCCCCccc---ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc---
Q 045549 11 CRDIKIQFGKNSFDGIKKLP---WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI--- 81 (134)
Q Consensus 11 ~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--- 81 (134)
++++.|++++|.+++++... +++|++|++++|++++..+.. +++|++|++++|.+++..+..+..+++|+.
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 47899999999998877654 388999999999998776543 789999999999999666666777777776
Q ss_pred ----cccCC-ccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccCC
Q 045549 82 ----PWPIP-ETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDILH 134 (134)
Q Consensus 82 ----~~~~~-~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~ 134 (134)
...++ ..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence 22333 457889999999999999996555568999999999999999877543
No 18
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.75 E-value=4.6e-17 Score=109.57 Aligned_cols=130 Identities=16% Similarity=0.162 Sum_probs=107.4
Q ss_pred ccccccccCCcccEEEcCCCccCCCCccc---ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccC
Q 045549 2 LEEEVTQEVCRDIKIQFGKNSFDGIKKLP---WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICN 75 (134)
Q Consensus 2 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~ 75 (134)
++..++..+++|++|++++|.++.++... .++|++|++++|.+++..+.. +++|++|++++|.+++..+..+..
T Consensus 76 i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 155 (270)
T 2o6q_A 76 LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK 155 (270)
T ss_dssp CCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred eChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccC
Confidence 45566788999999999999999877654 389999999999999877654 899999999999999666666788
Q ss_pred CCCccc-------cccC-CccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549 76 LSTIEI-------PWPI-PETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 76 l~~L~~-------~~~~-~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
+++|+. ...+ +..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.+..
T Consensus 156 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 888777 2233 3457889999999999999995545568899999999999998854
No 19
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.75 E-value=3.9e-17 Score=110.05 Aligned_cols=127 Identities=20% Similarity=0.226 Sum_probs=103.0
Q ss_pred cccCCcccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc-
Q 045549 7 TQEVCRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI- 81 (134)
Q Consensus 7 ~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~- 81 (134)
+..+++|++|++++|.+++++... +++|++|++++|.+++..+.. +++|++|++++|++++..+..+..+++|+.
T Consensus 59 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 138 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEE
Confidence 456889999999999998765322 388999999999999876643 889999999999999777777788887777
Q ss_pred ------cccC-CccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccC
Q 045549 82 ------PWPI-PETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDIL 133 (134)
Q Consensus 82 ------~~~~-~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 133 (134)
...+ +..++.+++|+.|++++|.+++..+..+.++++|+.|++++|.+++..
T Consensus 139 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (272)
T 3rfs_A 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197 (272)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred ECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence 2233 345688999999999999999666667899999999999999998764
No 20
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=3.6e-17 Score=110.70 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=21.9
Q ss_pred CcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549 89 LSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 89 ~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
+..+++|+.|++++|.+.+..|..+.++++|+.|++++|.+++
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 215 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc
Confidence 4444555555555555554444455555555555555555544
No 21
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=4.5e-17 Score=106.81 Aligned_cols=121 Identities=15% Similarity=0.175 Sum_probs=106.0
Q ss_pred ccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc-------c
Q 045549 13 DIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI-------P 82 (134)
Q Consensus 13 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-------~ 82 (134)
-+.++++++.++.+|..+..+++.|++++|.+++..+.. +++|++|++++|.+++..|..+..+.+|+. .
T Consensus 13 ~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 467999999999999988899999999999999876644 889999999999999888999999988887 3
Q ss_pred ccCCc-cCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccC
Q 045549 83 WPIPE-TLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDIL 133 (134)
Q Consensus 83 ~~~~~-~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 133 (134)
..+|. .+..+++|+.|++++|.+++..|..|.++++|+.|++++|.+++..
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 144 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA 144 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC
Confidence 34454 4688999999999999999777888999999999999999998754
No 22
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=4.5e-17 Score=110.25 Aligned_cols=125 Identities=18% Similarity=0.204 Sum_probs=52.1
Q ss_pred cccCCcccEEEcCCCccCCC-Cccc--ccCCcEEEccCcc-cCCcCCCC---CCCccEEEcccCccccccCccccCCCCc
Q 045549 7 TQEVCRDIKIQFGKNSFDGI-KKLP--WKNLEYLDFRSNL-LQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTI 79 (134)
Q Consensus 7 ~~~~~~L~~L~l~~n~l~~~-~~~~--~~~L~~L~l~~n~-l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L 79 (134)
+..+++|+.|++++|.++++ +..+ .++|++|++++|. ++...+.. +++|++|++++|.+++..+..+..+++|
T Consensus 52 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 131 (285)
T 1ozn_A 52 FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC
Confidence 34444555555555544442 2222 1444445554443 33332222 4444444444444443334444444444
Q ss_pred cc-------cccCC-ccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549 80 EI-------PWPIP-ETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 80 ~~-------~~~~~-~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
+. ...++ ..++.+++|+.|++++|.+++..+..+.++++|+.|++++|.+++
T Consensus 132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 33 11111 223444444444444444442222234444444444444444443
No 23
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.73 E-value=6.2e-17 Score=119.29 Aligned_cols=123 Identities=20% Similarity=0.220 Sum_probs=102.5
Q ss_pred CcccEEEcCCCccCCCCc-cc--ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc---
Q 045549 11 CRDIKIQFGKNSFDGIKK-LP--WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI--- 81 (134)
Q Consensus 11 ~~L~~L~l~~n~l~~~~~-~~--~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--- 81 (134)
++++.|++++|.+++++. .+ +++|++|++++|.+++..|.. ++.|++|++++|.+++..|..++.+++|+.
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 578999999999988655 33 388999999999998876654 889999999999999777889998888887
Q ss_pred ----c-ccCCccCcCCCCCcEEEccCCcccc-CccccccCCCCCcEEEcCCCcccccC
Q 045549 82 ----P-WPIPETLSKGSNLRTLNFNGNELVG-SVPRSLLNCENLQVVDLGNNKIEDIL 133 (134)
Q Consensus 82 ----~-~~~~~~~~~~~~L~~l~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~ 133 (134)
. ...+..++.+++|+.|++++|.+.+ .+|..++++++|+.|++++|.+++..
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC
Confidence 1 2233678899999999999999985 46889999999999999999988754
No 24
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=9.5e-17 Score=108.19 Aligned_cols=127 Identities=18% Similarity=0.246 Sum_probs=100.0
Q ss_pred ccccCC-cccEEEcCCCccCCCCcc-c--ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCC
Q 045549 6 VTQEVC-RDIKIQFGKNSFDGIKKL-P--WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLST 78 (134)
Q Consensus 6 ~~~~~~-~L~~L~l~~n~l~~~~~~-~--~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~ 78 (134)
+|..++ +++.|++++|.+++++.. + ++++++|++++|.+++..+.. +++|++|++++|.+++..+..+..+.+
T Consensus 22 ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (276)
T 2z62_A 22 IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (276)
T ss_dssp CCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred cCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCcc
Confidence 333333 689999999999886653 3 388999999999988766543 789999999999998777788888887
Q ss_pred ccc-------cccC-CccCcCCCCCcEEEccCCccccC-ccccccCCCCCcEEEcCCCccccc
Q 045549 79 IEI-------PWPI-PETLSKGSNLRTLNFNGNELVGS-VPRSLLNCENLQVVDLGNNKIEDI 132 (134)
Q Consensus 79 L~~-------~~~~-~~~~~~~~~L~~l~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~ 132 (134)
|+. ...+ +..++.+++|+.|++++|.+.+. +|..+.++++|+.|++++|.+++.
T Consensus 102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred ccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 776 1223 33578889999999999999853 588899999999999999988764
No 25
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.72 E-value=9.6e-17 Score=101.43 Aligned_cols=105 Identities=18% Similarity=0.164 Sum_probs=91.6
Q ss_pred cccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccccccCCcc
Q 045549 12 RDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPET 88 (134)
Q Consensus 12 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~~ 88 (134)
..+.+++++|.++.+|..+..++++|++++|.+++..+.. ++.|++|++++|+++ .++ +..
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~---------------~~~ 73 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLP---------------AGV 73 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCC---------------TTT
T ss_pred CCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccC---------------hhh
Confidence 5678999999999999988899999999999999987764 889999999999998 333 445
Q ss_pred CcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549 89 LSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132 (134)
Q Consensus 89 ~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 132 (134)
+..+++|+.|++++|++++..+..+.++++|+.|++++|.+++.
T Consensus 74 f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 74 FDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 67889999999999999965555799999999999999998754
No 26
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=1.4e-16 Score=108.49 Aligned_cols=124 Identities=22% Similarity=0.197 Sum_probs=67.7
Q ss_pred cccCCcccEEEcCCCccCCCCcc-cccCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCccc--
Q 045549 7 TQEVCRDIKIQFGKNSFDGIKKL-PWKNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEI-- 81 (134)
Q Consensus 7 ~~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-- 81 (134)
+..+++|+.|++++|.+++++.. ..++|++|++++|+++...... +++|++|++++|++++..+..+..+.+|+.
T Consensus 51 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~ 130 (290)
T 1p9a_G 51 LMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130 (290)
T ss_dssp GTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEE
T ss_pred hhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEE
Confidence 44555666666666665553332 2355666666666655432222 556666666666666444455555555554
Q ss_pred -----cccC-CccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccc
Q 045549 82 -----PWPI-PETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIE 130 (134)
Q Consensus 82 -----~~~~-~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 130 (134)
...+ +..+..+++|+.|++++|++++..+..+..+++|+.|++++|+++
T Consensus 131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 1122 233455666666666666666332334556666666666666665
No 27
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.72 E-value=1.6e-16 Score=100.77 Aligned_cols=121 Identities=17% Similarity=0.140 Sum_probs=85.1
Q ss_pred cccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc-------
Q 045549 12 RDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI------- 81 (134)
Q Consensus 12 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~------- 81 (134)
..+.++++++.++.+|.....+++.|++++|.+++..+.. +++|++|++++|++++..+..+..+.+|+.
T Consensus 8 ~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp ETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 3456677777776666666667777777777766654432 566777777777776444445566655555
Q ss_pred cccC-CccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549 82 PWPI-PETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132 (134)
Q Consensus 82 ~~~~-~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 132 (134)
...+ +..++.+++|+.+++++|.+++..+..+..+++|+.+++++|.+++.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 1223 34568899999999999999954444578899999999999999875
No 28
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.71 E-value=2e-16 Score=104.27 Aligned_cols=123 Identities=15% Similarity=0.204 Sum_probs=105.2
Q ss_pred CCcccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc-----
Q 045549 10 VCRDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI----- 81 (134)
Q Consensus 10 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~----- 81 (134)
.+.-+.++.+++.++.+|..+.+++++|++++|.+++..+.. ++.|++|++++|+++...+..+..+.+|+.
T Consensus 18 ~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 18 SCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp EEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 456778999999999999988899999999999999987654 889999999999998555566788888777
Q ss_pred --cccC-CccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccC
Q 045549 82 --PWPI-PETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDIL 133 (134)
Q Consensus 82 --~~~~-~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 133 (134)
...+ +..+..+++|+.|++++|.++ .+|..+.++++|+.|++++|.+++..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~ 151 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIP 151 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCC
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccC
Confidence 2233 345788999999999999999 88999999999999999999998653
No 29
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.71 E-value=2.4e-16 Score=101.52 Aligned_cols=118 Identities=15% Similarity=0.163 Sum_probs=82.9
Q ss_pred cEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCccc--------cc
Q 045549 14 IKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEI--------PW 83 (134)
Q Consensus 14 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--------~~ 83 (134)
+.+++++|.++.+|..+..+++.|++++|.++.+.... ++.|++|++++|.+++..+..|..+.+|+. ..
T Consensus 13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~ 92 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92 (193)
T ss_dssp TEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence 45666666666666665566777777777666433222 666777777777766555555666666555 22
Q ss_pred cCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549 84 PIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 84 ~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
..+..+..+++|+.|++++|.++...+..|..+++|+.+++++|.+..
T Consensus 93 i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 335578889999999999999995444568999999999999998864
No 30
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=1.9e-16 Score=108.09 Aligned_cols=44 Identities=25% Similarity=0.252 Sum_probs=18.8
Q ss_pred cCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549 88 TLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 88 ~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
.+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus 194 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 194 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred HhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc
Confidence 34444444444444444443222234444444444444444443
No 31
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=2.3e-16 Score=107.36 Aligned_cols=121 Identities=20% Similarity=0.262 Sum_probs=84.4
Q ss_pred CcccEEEcCCCccCCCCcc-c--ccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccc-----
Q 045549 11 CRDIKIQFGKNSFDGIKKL-P--WKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEI----- 81 (134)
Q Consensus 11 ~~L~~L~l~~n~l~~~~~~-~--~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~----- 81 (134)
+.++.|++++|.+++++.. + +++|+.|++++|.+++..+.. +++|++|++++|.++ .+|..+..+++|+.
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~ 109 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF 109 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCS
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCC
Confidence 3566666666666654332 2 266777777777766654433 777888888888887 67777777777666
Q ss_pred --cccC-CccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549 82 --PWPI-PETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132 (134)
Q Consensus 82 --~~~~-~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 132 (134)
...+ +..+..+++|+.|++++|++++..+..+..+++|+.|++++|++++.
T Consensus 110 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence 2233 35678888888899988888855555678888889999988888754
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.70 E-value=2.2e-16 Score=112.81 Aligned_cols=124 Identities=16% Similarity=0.111 Sum_probs=105.4
Q ss_pred CcccEEEcCCCccCC-CCccc--ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc---
Q 045549 11 CRDIKIQFGKNSFDG-IKKLP--WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI--- 81 (134)
Q Consensus 11 ~~L~~L~l~~n~l~~-~~~~~--~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--- 81 (134)
++|+.|++++|.+.+ .|..+ +++|+.|++++|.+++..+.. +++|++|++++|.+++..+..+..+++|+.
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 689999999999988 45444 389999999999999876654 789999999999999777888888888877
Q ss_pred -----cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccCC
Q 045549 82 -----PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDILH 134 (134)
Q Consensus 82 -----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~ 134 (134)
....|..++.+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..|
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 33457788999999999999999996545568999999999999999998765
No 33
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.69 E-value=6e-16 Score=98.15 Aligned_cols=104 Identities=18% Similarity=0.171 Sum_probs=89.4
Q ss_pred cccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccccccCCcc
Q 045549 12 RDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPET 88 (134)
Q Consensus 12 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~~ 88 (134)
.-+.+++++|.++.+|..+..++++|++++|.+++..|.. ++.|++|++++|++++ +| +..
T Consensus 13 ~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~---------------~~~ 76 (174)
T 2r9u_A 13 DQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IP---------------TGV 76 (174)
T ss_dssp CSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CC---------------TTT
T ss_pred CCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cC---------------hhH
Confidence 4478999999999899988899999999999999987754 8899999999999983 33 345
Q ss_pred CcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549 89 LSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 89 ~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
+..+++|+.|++++|++++..+..+..+++|+.|++++|.+..
T Consensus 77 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 77 FDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred hCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 6788999999999999995444469999999999999999864
No 34
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.68 E-value=5.4e-16 Score=115.67 Aligned_cols=122 Identities=20% Similarity=0.201 Sum_probs=80.2
Q ss_pred CcccEEEcCCCccCCCCccc---ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc---
Q 045549 11 CRDIKIQFGKNSFDGIKKLP---WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI--- 81 (134)
Q Consensus 11 ~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--- 81 (134)
++++.|++++|.+++++... +++|++|++++|.+++..|.. ++.|++|++++|.+++..+..++.+.+|+.
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 46777777777777755532 267777777777777665554 677777777777777443345666666665
Q ss_pred -----cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549 82 -----PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132 (134)
Q Consensus 82 -----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 132 (134)
....+..++.+++|+.|++++|.+.+..|..+.++++|+.|++++|.+++.
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence 122234566777777777777777765566667777777777777766553
No 35
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.68 E-value=6.4e-16 Score=110.36 Aligned_cols=128 Identities=19% Similarity=0.165 Sum_probs=75.6
Q ss_pred cccccCCcccEEEcCCCccCCCCccc---ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCC
Q 045549 5 EVTQEVCRDIKIQFGKNSFDGIKKLP---WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLST 78 (134)
Q Consensus 5 ~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~ 78 (134)
+.+..+++|+.|++++|.++.++... .++|++|++++|.++...+.. +++|++|++++|.++...+..+..+++
T Consensus 82 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 161 (440)
T 3zyj_A 82 NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161 (440)
T ss_dssp TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTT
T ss_pred HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcc
Confidence 44566777777777777777655433 267777788777777655432 677777777777777555555555555
Q ss_pred ccc--------cccCC-ccCcC----------------------CCCCcEEEccCCccccCccccccCCCCCcEEEcCCC
Q 045549 79 IEI--------PWPIP-ETLSK----------------------GSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNN 127 (134)
Q Consensus 79 L~~--------~~~~~-~~~~~----------------------~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 127 (134)
|+. ...++ ..+.. +++|+.|++++|.+++..|..|.++++|+.|++++|
T Consensus 162 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp CCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC
T ss_pred cCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC
Confidence 544 01111 13334 445555555555555444555555666666666666
Q ss_pred ccccc
Q 045549 128 KIEDI 132 (134)
Q Consensus 128 ~l~~~ 132 (134)
.+++.
T Consensus 242 ~l~~~ 246 (440)
T 3zyj_A 242 QIQVI 246 (440)
T ss_dssp CCCEE
T ss_pred ceeEE
Confidence 55543
No 36
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=1.8e-16 Score=106.77 Aligned_cols=127 Identities=17% Similarity=0.156 Sum_probs=94.5
Q ss_pred cccccCCcccEEEcCCCccCCCCccc---ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCC
Q 045549 5 EVTQEVCRDIKIQFGKNSFDGIKKLP---WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLST 78 (134)
Q Consensus 5 ~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~ 78 (134)
..+..+++|+.|++++|.+++++... .++|++|++++|.+++..+.. +++|++|++++|.+.+..+..+..+++
T Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 125 (276)
T 2z62_A 46 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125 (276)
T ss_dssp TTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred hHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCC
Confidence 35677899999999999998866533 388999999999988776544 788999999999998666667777777
Q ss_pred ccc-------cc--cCCccCcCCCCCcEEEccCCccccCccccccCCCCCc----EEEcCCCcccc
Q 045549 79 IEI-------PW--PIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQ----VVDLGNNKIED 131 (134)
Q Consensus 79 L~~-------~~--~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~----~L~l~~n~l~~ 131 (134)
|+. .. .+|..++.+++|+.|++++|.+++..+..+..+.+++ .+++++|.+++
T Consensus 126 L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~ 191 (276)
T 2z62_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191 (276)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCE
T ss_pred CCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccc
Confidence 776 11 2577888889999999999988855445555444443 55666665554
No 37
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.68 E-value=1.5e-15 Score=98.52 Aligned_cols=122 Identities=15% Similarity=0.186 Sum_probs=101.4
Q ss_pred cccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc-------
Q 045549 12 RDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI------- 81 (134)
Q Consensus 12 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~------- 81 (134)
.-+.++.+++.++.+|.....++++|++++|.+++..+.. +++|++|++++|++++..+..+..+++|+.
T Consensus 8 ~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 8 SGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 3467899999999999888899999999999999876643 889999999999999666666777877777
Q ss_pred cccCC-ccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccC
Q 045549 82 PWPIP-ETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDIL 133 (134)
Q Consensus 82 ~~~~~-~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 133 (134)
...++ ..++.+++|+.|++++|.+++..+..+.++++|+.|++++|.+++..
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 140 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP 140 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC
Confidence 22333 45788999999999999999655566899999999999999998653
No 38
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.68 E-value=5.2e-16 Score=105.89 Aligned_cols=127 Identities=17% Similarity=0.154 Sum_probs=99.4
Q ss_pred ccccCCcccEEEcCCCccCCCC-ccc--ccCCcEEEccCcccCC-cCCCC---CCCccEEEcccCccccccCccccCCCC
Q 045549 6 VTQEVCRDIKIQFGKNSFDGIK-KLP--WKNLEYLDFRSNLLQG-LFLDP---SSNMKVFLISNNRFTREIPCLICNLST 78 (134)
Q Consensus 6 ~~~~~~~L~~L~l~~n~l~~~~-~~~--~~~L~~L~l~~n~l~~-~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~ 78 (134)
.+..+++|+.|++++|.+.+.+ ..+ .++|+.|++++|.+++ ..|.. +++|++|++++|.+++..|..+..+++
T Consensus 121 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 200 (306)
T 2z66_A 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 200 (306)
T ss_dssp TTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCC
Confidence 4566778888888888877633 333 3788888888888876 33433 788999999999998777888888877
Q ss_pred ccc--------cccCCccCcCCCCCcEEEccCCccccCccccccCCC-CCcEEEcCCCccccc
Q 045549 79 IEI--------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCE-NLQVVDLGNNKIEDI 132 (134)
Q Consensus 79 L~~--------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~-~L~~L~l~~n~l~~~ 132 (134)
|+. ....+..+..+++|+.|++++|.+.+..|..+..++ +|+.|++++|.+++.
T Consensus 201 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 776 222334678899999999999999988888899985 899999999999763
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.68 E-value=4.7e-16 Score=111.84 Aligned_cols=128 Identities=20% Similarity=0.186 Sum_probs=78.2
Q ss_pred cccccCCcccEEEcCCCccCCC-Cccc--ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCC
Q 045549 5 EVTQEVCRDIKIQFGKNSFDGI-KKLP--WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLST 78 (134)
Q Consensus 5 ~~~~~~~~L~~L~l~~n~l~~~-~~~~--~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~ 78 (134)
+.+..+++|+.|++++|.++++ |..+ .++|++|++++|.++...+.. +++|++|++++|.+.+..+..+..+.+
T Consensus 50 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 129 (477)
T 2id5_A 50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129 (477)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcccccc
Confidence 3445566666677766666663 3333 266677777777666554432 566777777777776666666666666
Q ss_pred ccc--------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549 79 IEI--------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132 (134)
Q Consensus 79 L~~--------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 132 (134)
|+. ....+..++.+++|+.|++++|.+++..+..+.++++|+.|++++|.+++.
T Consensus 130 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp CCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 655 222344566667777777777777644344566666666666666666543
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.67 E-value=6.9e-16 Score=106.35 Aligned_cols=61 Identities=16% Similarity=0.072 Sum_probs=29.3
Q ss_pred ccccCCcccEEEcCCCccCCC-Ccccc--cCCcEEEccCcccCCcCCCCCCCccEEEcccCccc
Q 045549 6 VTQEVCRDIKIQFGKNSFDGI-KKLPW--KNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFT 66 (134)
Q Consensus 6 ~~~~~~~L~~L~l~~n~l~~~-~~~~~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~l~~n~l~ 66 (134)
.+..+++|++|++++|.++++ |..+. ++|++|++++|.++.......++|++|++++|.++
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~ 134 (330)
T 1xku_A 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEIT 134 (330)
T ss_dssp TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCC
T ss_pred hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCccc
Confidence 345556666666666666553 33331 55555555555555322221333444444444433
No 41
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.67 E-value=7.8e-16 Score=107.54 Aligned_cols=120 Identities=18% Similarity=0.255 Sum_probs=93.8
Q ss_pred cccEEEcCCCccCCCCccc----ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc---
Q 045549 12 RDIKIQFGKNSFDGIKKLP----WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI--- 81 (134)
Q Consensus 12 ~L~~L~l~~n~l~~~~~~~----~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--- 81 (134)
.++.|++++|.+++++... .++|+.|++++|.+++..+.. +++|++|++++|++++..+..+..+.+|+.
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 5788999999998865543 378899999999988876553 788999999999998666667787877776
Q ss_pred -----cccCCccCcCCCCCcEEEccCCccccCcccc-c---cCCCCCcEEEcCCCccccc
Q 045549 82 -----PWPIPETLSKGSNLRTLNFNGNELVGSVPRS-L---LNCENLQVVDLGNNKIEDI 132 (134)
Q Consensus 82 -----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~-~---~~l~~L~~L~l~~n~l~~~ 132 (134)
....+..+..+++|+.|++++|.++ .+|.. + ..+++|+.|++++|+|++.
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 2234667888999999999999999 45554 4 5688999999999998753
No 42
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.67 E-value=7.5e-16 Score=112.58 Aligned_cols=122 Identities=19% Similarity=0.266 Sum_probs=98.5
Q ss_pred CcccEEEcCCCccCCCCcc-c--ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc---
Q 045549 11 CRDIKIQFGKNSFDGIKKL-P--WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI--- 81 (134)
Q Consensus 11 ~~L~~L~l~~n~l~~~~~~-~--~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--- 81 (134)
++++.|++++|.+++++.. + +++|++|++++|.+++..+.. ++.|++|++++|.+++..+..++.+++|+.
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 3688999999999886543 3 388999999999988876554 789999999999998777788888888877
Q ss_pred ----cccCCc-cCcCCCCCcEEEccCCcccc-CccccccCCCCCcEEEcCCCccccc
Q 045549 82 ----PWPIPE-TLSKGSNLRTLNFNGNELVG-SVPRSLLNCENLQVVDLGNNKIEDI 132 (134)
Q Consensus 82 ----~~~~~~-~~~~~~~L~~l~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~ 132 (134)
...++. .++.+++|+.|++++|.+.+ .+|..++++++|+.|++++|.+++.
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence 223333 57888999999999999886 3688899999999999999988764
No 43
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.67 E-value=9.7e-16 Score=109.77 Aligned_cols=128 Identities=18% Similarity=0.177 Sum_probs=75.4
Q ss_pred cccccCCcccEEEcCCCccCCCCccc---ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCC
Q 045549 5 EVTQEVCRDIKIQFGKNSFDGIKKLP---WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLST 78 (134)
Q Consensus 5 ~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~ 78 (134)
+.+..+++|+.|++++|.+++++... .++|++|++++|.++...+.. +++|++|++++|.+++..+..+..+++
T Consensus 93 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 172 (452)
T 3zyi_A 93 DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS 172 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTT
T ss_pred HHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCc
Confidence 34556677777777777776644332 267777777777777655443 667777777777776444445554444
Q ss_pred ccc--------cccCC-c----------------------cCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCC
Q 045549 79 IEI--------PWPIP-E----------------------TLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNN 127 (134)
Q Consensus 79 L~~--------~~~~~-~----------------------~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 127 (134)
|+. ...++ . .+..+++|+.|++++|.+.+..|..|.++++|+.|++++|
T Consensus 173 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252 (452)
T ss_dssp CCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS
T ss_pred ccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC
Confidence 443 00111 1 2334455556666666666555556666666666776666
Q ss_pred ccccc
Q 045549 128 KIEDI 132 (134)
Q Consensus 128 ~l~~~ 132 (134)
.+++.
T Consensus 253 ~l~~~ 257 (452)
T 3zyi_A 253 QVSLI 257 (452)
T ss_dssp CCCEE
T ss_pred cCceE
Confidence 66554
No 44
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.67 E-value=6e-16 Score=110.51 Aligned_cols=128 Identities=17% Similarity=0.232 Sum_probs=103.4
Q ss_pred cccCCcccEEEcCCCccCCC-Cccc--ccCCcEEEccCcccCCcCCC-C---CCCccEEEcccCccccccCccccCCCCc
Q 045549 7 TQEVCRDIKIQFGKNSFDGI-KKLP--WKNLEYLDFRSNLLQGLFLD-P---SSNMKVFLISNNRFTREIPCLICNLSTI 79 (134)
Q Consensus 7 ~~~~~~L~~L~l~~n~l~~~-~~~~--~~~L~~L~l~~n~l~~~~~~-~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L 79 (134)
|.-.+++++|++++|.++++ |..+ +++|++|++++|.+.+..+. . +++|++|++++|.+++..|..++.+++|
T Consensus 26 p~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 105 (455)
T 3v47_A 26 PELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANL 105 (455)
T ss_dssp CCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTC
T ss_pred CCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccC
Confidence 33336899999999999885 5444 38999999999998755433 2 8899999999999998889999988888
Q ss_pred cc--------cccCCcc--CcCCCCCcEEEccCCccccCcccc-ccCCCCCcEEEcCCCcccccCC
Q 045549 80 EI--------PWPIPET--LSKGSNLRTLNFNGNELVGSVPRS-LLNCENLQVVDLGNNKIEDILH 134 (134)
Q Consensus 80 ~~--------~~~~~~~--~~~~~~L~~l~l~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~~~~ 134 (134)
+. .+..+.. ++.+++|+.|++++|.+.+..|.. +.++++|+.|++++|.+++..|
T Consensus 106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 171 (455)
T 3v47_A 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171 (455)
T ss_dssp CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence 87 1122333 888999999999999999776765 8999999999999999987643
No 45
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.67 E-value=1.2e-15 Score=109.05 Aligned_cols=128 Identities=14% Similarity=0.130 Sum_probs=90.0
Q ss_pred ccccccCCcccEEEcCCCccCCCCccc---ccCCcEEEccCcccCCcCCCC---CC------------------------
Q 045549 4 EEVTQEVCRDIKIQFGKNSFDGIKKLP---WKNLEYLDFRSNLLQGLFLDP---SS------------------------ 53 (134)
Q Consensus 4 ~~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~---l~------------------------ 53 (134)
...+.++++|+.|++++|.++.++... .++|+.|++++|.++...+.. ++
T Consensus 105 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l 184 (440)
T 3zyj_A 105 IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184 (440)
T ss_dssp GGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC
T ss_pred hhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcc
Confidence 345667788888888888887766543 277778888887776544322 44
Q ss_pred -CccEEEcccCccccccCccccCCCCccc--------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEc
Q 045549 54 -NMKVFLISNNRFTREIPCLICNLSTIEI--------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDL 124 (134)
Q Consensus 54 -~l~~L~l~~n~l~~~~~~~~~~l~~L~~--------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l 124 (134)
+|++|++++|.++ .+| .+..+.+|+. ....|..+..+++|+.|++++|.+++..+..|.++++|+.|++
T Consensus 185 ~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 262 (440)
T 3zyj_A 185 SNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINL 262 (440)
T ss_dssp SSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEEC
T ss_pred cccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEEC
Confidence 4555555555544 333 2334444444 2334678889999999999999999777888999999999999
Q ss_pred CCCcccccC
Q 045549 125 GNNKIEDIL 133 (134)
Q Consensus 125 ~~n~l~~~~ 133 (134)
++|++++..
T Consensus 263 ~~N~l~~~~ 271 (440)
T 3zyj_A 263 AHNNLTLLP 271 (440)
T ss_dssp TTSCCCCCC
T ss_pred CCCCCCccC
Confidence 999998653
No 46
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=1.1e-16 Score=120.65 Aligned_cols=110 Identities=22% Similarity=0.250 Sum_probs=73.5
Q ss_pred cccccCCcccEEEcCCCccCCCCcccc--cCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCc
Q 045549 5 EVTQEVCRDIKIQFGKNSFDGIKKLPW--KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTI 79 (134)
Q Consensus 5 ~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L 79 (134)
+.+..++.|+.|++++|.+..+|..++ .+|++|++++|.++. +|.. +++|++|+|++|+++ .
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~-~----------- 284 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLT-S----------- 284 (727)
T ss_dssp ----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSC-CCGGGGGGTTCCEEECTTSCCS-S-----------
T ss_pred hhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcc-cChhhhCCCCCCEEeCcCCcCC-c-----------
Confidence 344556666667777666666665543 666666777766663 3332 666667777766666 3
Q ss_pred cccccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccC
Q 045549 80 EIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDIL 133 (134)
Q Consensus 80 ~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 133 (134)
+|..++.+++|+.|++++|.+. .+|..|+++++|+.|++++|.|++.+
T Consensus 285 -----lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~ 332 (727)
T 4b8c_D 285 -----LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQF 332 (727)
T ss_dssp -----CCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHH
T ss_pred -----cChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCC
Confidence 4556667778888888888887 67777888888888888888887754
No 47
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=4.4e-16 Score=100.37 Aligned_cols=120 Identities=11% Similarity=0.128 Sum_probs=53.4
Q ss_pred CCcccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccc------
Q 045549 10 VCRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEI------ 81 (134)
Q Consensus 10 ~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~------ 81 (134)
+++|+.|++++|.++.++... ++++++|++++|.++....-. ++.|++|++++|.+++..+..++.+++|+.
T Consensus 43 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n 122 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122 (197)
T ss_dssp HHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS
T ss_pred cCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC
Confidence 445555555555555444211 245555555555443321111 445555555555554444444444444444
Q ss_pred --cccCCccCcCCCCCcEEEccCCc-cccCccccccCCCCCcEEEcCCCcccc
Q 045549 82 --PWPIPETLSKGSNLRTLNFNGNE-LVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 82 --~~~~~~~~~~~~~L~~l~l~~n~-l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
....+..++.+++|+.|++++|. +. .+| .+.++++|+.|++++|.+++
T Consensus 123 ~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 123 AHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp BCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC
T ss_pred ccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC
Confidence 11123334444445555555444 33 333 34444444444444444443
No 48
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.66 E-value=3.3e-16 Score=115.44 Aligned_cols=99 Identities=18% Similarity=0.179 Sum_probs=50.2
Q ss_pred cCCcEEEccCcccCCcCCCC---CCCccEEEcccCcccc-ccCccccCCCCccc--------cccCCccCcCCCCCcEEE
Q 045549 32 KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTR-EIPCLICNLSTIEI--------PWPIPETLSKGSNLRTLN 99 (134)
Q Consensus 32 ~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~--------~~~~~~~~~~~~~L~~l~ 99 (134)
++|+.|++++|.+++..|.. +++|++|++++|.+++ ..|..+..+++|+. ....|..++.+++|+.|+
T Consensus 424 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 503 (606)
T 3vq2_A 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503 (606)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence 44444444444444433332 4455555555555543 24444444444444 222344455555666666
Q ss_pred ccCCccccCccccccCCCCCcEEEcCCCccc
Q 045549 100 FNGNELVGSVPRSLLNCENLQVVDLGNNKIE 130 (134)
Q Consensus 100 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 130 (134)
+++|.+++..|..+.++++|+.|++++|+++
T Consensus 504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp CCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred CCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 6666655444555566666666666666554
No 49
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.66 E-value=8.1e-16 Score=112.42 Aligned_cols=127 Identities=19% Similarity=0.221 Sum_probs=74.2
Q ss_pred ccCCcccEEEcCCCccCCCCc-cc---ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccc-cccCccccCCCCc
Q 045549 8 QEVCRDIKIQFGKNSFDGIKK-LP---WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFT-REIPCLICNLSTI 79 (134)
Q Consensus 8 ~~~~~L~~L~l~~n~l~~~~~-~~---~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~-~~~~~~~~~l~~L 79 (134)
..+++|+.|++++|.+.+.+. .. .++|++|++++|.+++..+.. +++|++|++++|.+. +.+|..+..+++|
T Consensus 393 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L 472 (570)
T 2z63_A 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472 (570)
T ss_dssp ETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred cccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC
Confidence 345555555555555554221 11 255666666666555544433 556666666666665 4566666666655
Q ss_pred cc--------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccCC
Q 045549 80 EI--------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDILH 134 (134)
Q Consensus 80 ~~--------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~ 134 (134)
+. ....|..++.+++|+.|++++|.+++..+..+.++++|+.+++++|.+++..|
T Consensus 473 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 55 22335566666777777777777775545556677777777777777766543
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.66 E-value=1.6e-15 Score=108.68 Aligned_cols=127 Identities=15% Similarity=0.123 Sum_probs=90.6
Q ss_pred cccccCCcccEEEcCCCccCCCCccc---ccCCcEEEccCcccCCcCCCC----------------------------CC
Q 045549 5 EVTQEVCRDIKIQFGKNSFDGIKKLP---WKNLEYLDFRSNLLQGLFLDP----------------------------SS 53 (134)
Q Consensus 5 ~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~----------------------------l~ 53 (134)
+.+..+++|+.|++++|.++.++... .++|++|++++|.++...+.. ++
T Consensus 117 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~ 196 (452)
T 3zyi_A 117 GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCT
T ss_pred hhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCC
Confidence 45667778888888888877766543 267777777777766543321 44
Q ss_pred CccEEEcccCccccccCccccCCCCccc--------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcC
Q 045549 54 NMKVFLISNNRFTREIPCLICNLSTIEI--------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLG 125 (134)
Q Consensus 54 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~--------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~ 125 (134)
+|++|++++|+++ .+| .+..+.+|+. ....|..+..+++|+.|++++|.+.+..+..+.++++|+.|+++
T Consensus 197 ~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 274 (452)
T 3zyi_A 197 NLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274 (452)
T ss_dssp TCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccc-ccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECC
Confidence 5555556556555 233 2444444444 23446788999999999999999997778889999999999999
Q ss_pred CCcccccC
Q 045549 126 NNKIEDIL 133 (134)
Q Consensus 126 ~n~l~~~~ 133 (134)
+|++++..
T Consensus 275 ~N~l~~~~ 282 (452)
T 3zyi_A 275 HNNLSSLP 282 (452)
T ss_dssp SSCCSCCC
T ss_pred CCcCCccC
Confidence 99998653
No 51
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=7.4e-16 Score=96.83 Aligned_cols=121 Identities=18% Similarity=0.180 Sum_probs=98.5
Q ss_pred cCCcccEEEcCCCccC--CCCccc--ccCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCccc-
Q 045549 9 EVCRDIKIQFGKNSFD--GIKKLP--WKNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEI- 81 (134)
Q Consensus 9 ~~~~L~~L~l~~n~l~--~~~~~~--~~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~- 81 (134)
..++++.|++++|.++ .+|..+ +++|++|++++|.+++. ... +++|++|++++|++++..|..+..+++|+.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 3478999999999998 488764 49999999999999887 333 889999999999999768877776777766
Q ss_pred ------cccCC--ccCcCCCCCcEEEccCCccccCccc----cccCCCCCcEEEcCCCcccc
Q 045549 82 ------PWPIP--ETLSKGSNLRTLNFNGNELVGSVPR----SLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 82 ------~~~~~--~~~~~~~~L~~l~l~~n~l~~~~p~----~~~~l~~L~~L~l~~n~l~~ 131 (134)
...++ ..+..+++|+.|++++|.+++ .|. .+..+++|+.|++++|.++.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCChhh
Confidence 22333 577888999999999999994 454 78899999999999988754
No 52
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.65 E-value=7.6e-17 Score=119.95 Aligned_cols=123 Identities=19% Similarity=0.175 Sum_probs=84.0
Q ss_pred cccCCcccEEEcCCCccCC------------------CCcccc----cCCcEEEccCcccCCcCCCC---CCCccEEEcc
Q 045549 7 TQEVCRDIKIQFGKNSFDG------------------IKKLPW----KNLEYLDFRSNLLQGLFLDP---SSNMKVFLIS 61 (134)
Q Consensus 7 ~~~~~~L~~L~l~~n~l~~------------------~~~~~~----~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~ 61 (134)
+..+++|++|++++|.+++ +|+.+. ++|++|++++|.+.+..|.. +++|++|+++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 4467788888888888887 777543 77888888888877777754 7778888888
Q ss_pred cCc-ccc-ccCccccCC------CCccc-------cccCCc--cCcCCCCCcEEEccCCccccCccccccCCCCCcEEEc
Q 045549 62 NNR-FTR-EIPCLICNL------STIEI-------PWPIPE--TLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDL 124 (134)
Q Consensus 62 ~n~-l~~-~~~~~~~~l------~~L~~-------~~~~~~--~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l 124 (134)
+|+ +++ .+|..++.+ ++|+. ...+|. .++.+++|+.|++++|.+.|.+| .+..+++|+.|++
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L 360 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL 360 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence 887 776 677666554 44444 225565 66666777777777777666666 5566666666666
Q ss_pred CCCccc
Q 045549 125 GNNKIE 130 (134)
Q Consensus 125 ~~n~l~ 130 (134)
++|.++
T Consensus 361 ~~N~l~ 366 (636)
T 4eco_A 361 AYNQIT 366 (636)
T ss_dssp CSSEEE
T ss_pred CCCccc
Confidence 666554
No 53
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.65 E-value=1.6e-15 Score=111.82 Aligned_cols=77 Identities=12% Similarity=0.057 Sum_probs=43.3
Q ss_pred cccccCCcccEEEcCCCccCCCCcccc--cCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCcc-ccCCCC
Q 045549 5 EVTQEVCRDIKIQFGKNSFDGIKKLPW--KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCL-ICNLST 78 (134)
Q Consensus 5 ~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~-~~~l~~ 78 (134)
+.+..+++|+.|++++|.++.+|..+. ++|++|++++|.+++..+.. +++|++|++++|.+.+.++.. +..+++
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred HHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 345566777777777777766666542 66777777777666554422 455555555555544333322 344444
Q ss_pred ccc
Q 045549 79 IEI 81 (134)
Q Consensus 79 L~~ 81 (134)
|+.
T Consensus 352 L~~ 354 (606)
T 3t6q_A 352 LRE 354 (606)
T ss_dssp CCE
T ss_pred CCE
Confidence 333
No 54
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.65 E-value=1.9e-15 Score=112.42 Aligned_cols=124 Identities=16% Similarity=0.237 Sum_probs=86.7
Q ss_pred cCCcccEEEcCCCccCCCCcccc---cCCcEEEccCcccCCcCCCC---CC-------CccEEEcccCccccccCcccc-
Q 045549 9 EVCRDIKIQFGKNSFDGIKKLPW---KNLEYLDFRSNLLQGLFLDP---SS-------NMKVFLISNNRFTREIPCLIC- 74 (134)
Q Consensus 9 ~~~~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~n~l~~~~~~~---l~-------~l~~L~l~~n~l~~~~~~~~~- 74 (134)
.+++|+.|++++|.++.+|..++ ++|+.|++++|.++...+.. .. +|++|++++|+++ .+|..+.
T Consensus 431 ~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 509 (636)
T 4eco_A 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA 509 (636)
T ss_dssp CCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST
T ss_pred cCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh
Confidence 34577777777777777776543 67788888888877433322 21 7888888888887 6777665
Q ss_pred -CCCCccc-------cccCCccCcCCCCCcEEEc------cCCccccCccccccCCCCCcEEEcCCCcccccCC
Q 045549 75 -NLSTIEI-------PWPIPETLSKGSNLRTLNF------NGNELVGSVPRSLLNCENLQVVDLGNNKIEDILH 134 (134)
Q Consensus 75 -~l~~L~~-------~~~~~~~~~~~~~L~~l~l------~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~ 134 (134)
.+++|+. ...+|..++.+++|+.|++ ++|.+.+.+|..+.++++|+.|++++|.+ +.+|
T Consensus 510 ~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip 582 (636)
T 4eco_A 510 TTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVN 582 (636)
T ss_dssp TTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred ccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccC
Confidence 6666665 2336777777888888888 45667777777788888888888888887 4444
No 55
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.65 E-value=3.8e-16 Score=113.87 Aligned_cols=124 Identities=14% Similarity=0.138 Sum_probs=91.6
Q ss_pred CcccEEEcCCCccCCCC-ccc--ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc---
Q 045549 11 CRDIKIQFGKNSFDGIK-KLP--WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI--- 81 (134)
Q Consensus 11 ~~L~~L~l~~n~l~~~~-~~~--~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--- 81 (134)
+++++|++++|.+++++ ..+ ++++++|++++|++++..+.. +++|++|++++|++++..+..++.+++|+.
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 57888888888888743 333 378888888888888766543 778888888888888666666777777776
Q ss_pred ----cc--cCCccCcCCCCCcEEEccCCccccCcc-ccccCCCCCcEEEcCCCcccccCC
Q 045549 82 ----PW--PIPETLSKGSNLRTLNFNGNELVGSVP-RSLLNCENLQVVDLGNNKIEDILH 134 (134)
Q Consensus 82 ----~~--~~~~~~~~~~~L~~l~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~ 134 (134)
.. ..|..++.+++|+.|++++|.+.+.+| ..+.++++|+.|++++|.+++.+|
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 165 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence 11 345667788888888888887444554 467888888888888888877543
No 56
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.65 E-value=3.1e-15 Score=103.10 Aligned_cols=124 Identities=23% Similarity=0.317 Sum_probs=60.0
Q ss_pred cccCCcccEEEcCCCccCC--C-Cccc--ccCCcEEEccCcccCCcCCCCCCCccEEEcccCccccccCccccCCCCccc
Q 045549 7 TQEVCRDIKIQFGKNSFDG--I-KKLP--WKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEI 81 (134)
Q Consensus 7 ~~~~~~L~~L~l~~n~l~~--~-~~~~--~~~L~~L~l~~n~l~~~~~~~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~ 81 (134)
+..+++|+.|++++|.++. + +..+ .++|++|++++|.++.......++|++|++++|.+++..+..+..+++|+.
T Consensus 141 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 220 (330)
T 1xku_A 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAK 220 (330)
T ss_dssp HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCE
T ss_pred hcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence 3445555555555555542 2 1111 145555555555555432222445555555555555444445554444444
Q ss_pred --------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549 82 --------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 82 --------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
....+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++
T Consensus 221 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp EECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred EECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc
Confidence 1112224444555555555555555 445555555555555555555543
No 57
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=7.2e-16 Score=99.36 Aligned_cols=123 Identities=13% Similarity=0.078 Sum_probs=98.4
Q ss_pred cccCCcccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc-
Q 045549 7 TQEVCRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI- 81 (134)
Q Consensus 7 ~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~- 81 (134)
+..+++|+.|++++|.++.++... +++|++|++++|.+++..+.. +++|++|++++|.+++..+..+..+++|+.
T Consensus 62 l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L 141 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141 (197)
T ss_dssp GGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEE
T ss_pred HhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEE
Confidence 467889999999999877665332 489999999999998754444 899999999999999878888888888877
Q ss_pred -------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549 82 -------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132 (134)
Q Consensus 82 -------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 132 (134)
...++ .+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|++.+.
T Consensus 142 ~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~~ 196 (197)
T 4ezg_A 142 DLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGGK 196 (197)
T ss_dssp ECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-----
T ss_pred EccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCCc
Confidence 12233 57889999999999999994 55 789999999999999998763
No 58
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.64 E-value=2.4e-15 Score=112.15 Aligned_cols=132 Identities=14% Similarity=0.130 Sum_probs=107.5
Q ss_pred cccccccCCcccEEEcCCCccCCCCcc-c--ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCC
Q 045549 3 EEEVTQEVCRDIKIQFGKNSFDGIKKL-P--WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNL 76 (134)
Q Consensus 3 ~~~~~~~~~~L~~L~l~~n~l~~~~~~-~--~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l 76 (134)
+...+..+++|++|++++|.+++++.. + .++|++|++++|.+++..+.. +++|++|++++|++++..|..++.+
T Consensus 41 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 120 (680)
T 1ziw_A 41 PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120 (680)
T ss_dssp CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTC
T ss_pred CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHcccc
Confidence 445577889999999999999985443 3 389999999999999876543 8899999999999997777888888
Q ss_pred CCccc--------cccCCccCcCCCCCcEEEccCCccccCcccccc--CCCCCcEEEcCCCcccccCC
Q 045549 77 STIEI--------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLL--NCENLQVVDLGNNKIEDILH 134 (134)
Q Consensus 77 ~~L~~--------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~--~l~~L~~L~l~~n~l~~~~~ 134 (134)
++|+. ....+..++.+++|+.|++++|.+++..+..+. .+++|+.|++++|.+++..|
T Consensus 121 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 188 (680)
T 1ziw_A 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188 (680)
T ss_dssp TTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred CCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccCh
Confidence 88887 334566788899999999999999966565544 56889999999999887643
No 59
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.64 E-value=1.9e-15 Score=104.23 Aligned_cols=125 Identities=22% Similarity=0.247 Sum_probs=75.3
Q ss_pred cccCCcccEEEcCCCccCC--CCcccc--cCCcEEEccCcccCCcCCCCCCCccEEEcccCccccccCccccCCCCccc-
Q 045549 7 TQEVCRDIKIQFGKNSFDG--IKKLPW--KNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEI- 81 (134)
Q Consensus 7 ~~~~~~L~~L~l~~n~l~~--~~~~~~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~- 81 (134)
+..+++|+.|++++|.++. +....+ .+++.|++++|.+++......++|++|++++|.+++..+..+..+++|+.
T Consensus 143 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L 222 (332)
T 2ft3_A 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRL 222 (332)
T ss_dssp GSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCC
T ss_pred hCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 3444555555555554432 111111 24444444444444422222456777777777777666666766666655
Q ss_pred -------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549 82 -------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132 (134)
Q Consensus 82 -------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 132 (134)
....+..++.+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++.
T Consensus 223 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 223 GLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp BCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBC
T ss_pred ECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCcc
Confidence 2223345677788888888888888 6777788888888888888887654
No 60
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=3.1e-15 Score=110.55 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=26.8
Q ss_pred CcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549 89 LSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 89 ~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
++.+++|+.|++++|.+.+..|..+.++++|+.|++++|.+++
T Consensus 250 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 292 (597)
T 3oja_B 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 292 (597)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE
T ss_pred hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC
Confidence 3445566666666666665556666666666666666666654
No 61
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.64 E-value=6.8e-16 Score=112.01 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=60.6
Q ss_pred EEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc-------ccc
Q 045549 15 KIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI-------PWP 84 (134)
Q Consensus 15 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-------~~~ 84 (134)
.|++++|.++++|..+.+++++|++++|.+++..+.. ++.|++|++++|++++..|..++.+++|+. ...
T Consensus 4 ~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 83 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK 83 (520)
T ss_dssp EEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE
T ss_pred eEecCCCCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee
Confidence 4555555555555544455555555555555443322 555555555555555444555555555544 122
Q ss_pred CCccCcCCCCCcEEEccCCcccc-CccccccCCCCCcEEEcCCCccc
Q 045549 85 IPETLSKGSNLRTLNFNGNELVG-SVPRSLLNCENLQVVDLGNNKIE 130 (134)
Q Consensus 85 ~~~~~~~~~~L~~l~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~ 130 (134)
+|.. .+++|+.|++++|.+++ .+|..++++++|+.|++++|.++
T Consensus 84 lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 84 ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc
Confidence 3333 45566666666666654 24555666666666666665554
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.64 E-value=5.8e-16 Score=107.68 Aligned_cols=120 Identities=14% Similarity=0.138 Sum_probs=55.5
Q ss_pred cccEEEcCCCccCCCCcc-c--ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc----
Q 045549 12 RDIKIQFGKNSFDGIKKL-P--WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI---- 81 (134)
Q Consensus 12 ~L~~L~l~~n~l~~~~~~-~--~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~---- 81 (134)
+++.|++++|.+++++.. + +++|++|++++|.+++..+.. +++|++|++++|++++..+..++.+++|+.
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 455555555555554432 1 255555555555555443332 455555555555555322222444444444
Q ss_pred ---cccCCc--cCcCCCCCcEEEccCC-ccccCccccccCCCCCcEEEcCCCcccc
Q 045549 82 ---PWPIPE--TLSKGSNLRTLNFNGN-ELVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 82 ---~~~~~~--~~~~~~~L~~l~l~~n-~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
...+|. .++.+++|+.|++++| .+.+..+..+.++++|+.|++++|.+++
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 112232 3444555555555554 2332223344455555555555554444
No 63
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.64 E-value=1.8e-15 Score=106.41 Aligned_cols=122 Identities=13% Similarity=0.244 Sum_probs=81.8
Q ss_pred CCcccEEEcCCCccCCCCccc---ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc--
Q 045549 10 VCRDIKIQFGKNSFDGIKKLP---WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI-- 81 (134)
Q Consensus 10 ~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-- 81 (134)
+++++.|++++|.++.+|... ++++++|++++|.+++..+.. ++.|++|++++|.+++..|..++.+++|+.
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 466777777777776666654 267777777777776654433 667777777777777665666666666665
Q ss_pred -----cccCCcc-CcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549 82 -----PWPIPET-LSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 82 -----~~~~~~~-~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
...+|.. ++.+++|+.|++++|.+.+..+..+.++++|+.|++++|.+++
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence 2234443 4667777777777777775555667777777777777777664
No 64
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.64 E-value=3.4e-15 Score=110.04 Aligned_cols=125 Identities=16% Similarity=0.139 Sum_probs=60.0
Q ss_pred cccCCcccEEEcCCCccCCC-Cccc--ccCCcEEEccCcccCCcCCCC----CCCccEEEcccCccccccCccccCCCCc
Q 045549 7 TQEVCRDIKIQFGKNSFDGI-KKLP--WKNLEYLDFRSNLLQGLFLDP----SSNMKVFLISNNRFTREIPCLICNLSTI 79 (134)
Q Consensus 7 ~~~~~~L~~L~l~~n~l~~~-~~~~--~~~L~~L~l~~n~l~~~~~~~----l~~l~~L~l~~n~l~~~~~~~~~~l~~L 79 (134)
+..+++|+.|++++|.+.++ +..+ .++++.|++++|++++..+.. +++|++|++++|.+++..|..+..+++|
T Consensus 372 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 451 (606)
T 3t6q_A 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451 (606)
T ss_dssp TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC
T ss_pred cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC
Confidence 34555666666666655552 2222 255555666655555443321 4555555555555554445555544444
Q ss_pred cc--------cc---cCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549 80 EI--------PW---PIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 80 ~~--------~~---~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
+. .+ ..+..++.+++|+.|++++|.+++..|..+.++++|+.|++++|++++
T Consensus 452 ~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 514 (606)
T 3t6q_A 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514 (606)
T ss_dssp CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCG
T ss_pred CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCc
Confidence 44 00 011234444445555555554443334444444445555555444444
No 65
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.64 E-value=2.1e-15 Score=111.00 Aligned_cols=118 Identities=18% Similarity=0.075 Sum_probs=101.2
Q ss_pred cEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc-------cc
Q 045549 14 IKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI-------PW 83 (134)
Q Consensus 14 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-------~~ 83 (134)
+..+.++-.++.||+.+..++++|++++|+++++.+.. ++.|++|++++|++++..+.+|..+++|+. ..
T Consensus 34 ~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp TEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred CEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence 45677777888899988889999999999999877654 899999999999999777778999988887 23
Q ss_pred cCC-ccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549 84 PIP-ETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 84 ~~~-~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
.+| ..|+.+++|+.|++++|.+++..+..|+++++|+.|++++|.+++
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~ 162 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 162 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCcccc
Confidence 344 468899999999999999996555679999999999999999875
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=7e-16 Score=105.78 Aligned_cols=59 Identities=8% Similarity=-0.057 Sum_probs=28.2
Q ss_pred ccCCcccEEEcCCCccCCCCcccc-------cCCcEEEccCcccCCcCCCC---CCCccEEEcccCccc
Q 045549 8 QEVCRDIKIQFGKNSFDGIKKLPW-------KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFT 66 (134)
Q Consensus 8 ~~~~~L~~L~l~~n~l~~~~~~~~-------~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~ 66 (134)
..+++|+.|++++|.++++|..+. ++|++|++++|++++..+.. +++|++|++++|++.
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 186 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTC
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcC
Confidence 344555555555555544433221 44555555555555444332 445555555555543
No 67
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.64 E-value=1.7e-15 Score=110.40 Aligned_cols=125 Identities=15% Similarity=0.134 Sum_probs=77.3
Q ss_pred cccCCcccEEEcCCCccCCCCcccc--cCCcEEEccCcccCCcCCCCCCCccEEEcccCccccccCccccCCCCccc---
Q 045549 7 TQEVCRDIKIQFGKNSFDGIKKLPW--KNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEI--- 81 (134)
Q Consensus 7 ~~~~~~L~~L~l~~n~l~~~~~~~~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--- 81 (134)
+..+++|+.|++++|.++.+|..+. ++|++|++++|+++.......++|++|++++|++++. +..+..+..|..
T Consensus 383 ~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~-~~~l~~L~~L~Ls~N 461 (549)
T 2z81_A 383 LLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSF-SLFLPRLQELYISRN 461 (549)
T ss_dssp GGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCC-CCCCTTCCEEECCSS
T ss_pred hhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhh-cccCChhcEEECCCC
Confidence 4455556666666665555555432 5566666666665543222245666666666666632 222222222222
Q ss_pred -cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccC
Q 045549 82 -PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDIL 133 (134)
Q Consensus 82 -~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 133 (134)
...+|. .+.+++|+.|++++|++++..|..+..+++|+.+++++|.+.+..
T Consensus 462 ~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 462 KLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp CCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred ccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCC
Confidence 334555 356788999999999998776777888999999999999887653
No 68
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=2.4e-15 Score=111.10 Aligned_cols=122 Identities=13% Similarity=0.232 Sum_probs=82.8
Q ss_pred CCcccEEEcCCCccCCCCcccc---cCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc--
Q 045549 10 VCRDIKIQFGKNSFDGIKKLPW---KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI-- 81 (134)
Q Consensus 10 ~~~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-- 81 (134)
+.+++.+++++|.+..+|...+ ++|++|++++|.+++..+.. ++.|++|++++|.+++..|..++.+++|+.
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 4566777777777766666542 67777777777777665533 667777777777777666666666666665
Q ss_pred -----cccCCcc-CcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549 82 -----PWPIPET-LSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 82 -----~~~~~~~-~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
...+|.. ++.+++|+.|++++|.+.+..|..+.++++|+.|++++|.+++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 2234433 4677777777777777776666667777777777777777765
No 69
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.63 E-value=5.2e-16 Score=107.92 Aligned_cols=125 Identities=19% Similarity=0.213 Sum_probs=80.8
Q ss_pred cccccCCcccEEEcCCCccCCCCcc-c--ccCCcEEEccCcccCCcCCC---CCCCccEEEcccCccccccCc--cccCC
Q 045549 5 EVTQEVCRDIKIQFGKNSFDGIKKL-P--WKNLEYLDFRSNLLQGLFLD---PSSNMKVFLISNNRFTREIPC--LICNL 76 (134)
Q Consensus 5 ~~~~~~~~L~~L~l~~n~l~~~~~~-~--~~~L~~L~l~~n~l~~~~~~---~l~~l~~L~l~~n~l~~~~~~--~~~~l 76 (134)
+.+..+++|+.|++++|.+++++.. + .++|++|++++|.+++..+. .+++|++|++++|.++ .+|. .+..+
T Consensus 70 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l 148 (353)
T 2z80_A 70 SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHL 148 (353)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTC
T ss_pred HHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccC
Confidence 3456677888888888877774432 3 26777888888777765443 1677777777777777 4443 56666
Q ss_pred CCccc---------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccc
Q 045549 77 STIEI---------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIE 130 (134)
Q Consensus 77 ~~L~~---------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 130 (134)
++|+. ....+..++.+++|+.|++++|.+.+..|..+..+++|+.|++++|.++
T Consensus 149 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 66655 1112345666777777777777777555666666666666666666553
No 70
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.63 E-value=1.4e-15 Score=109.36 Aligned_cols=128 Identities=19% Similarity=0.132 Sum_probs=96.0
Q ss_pred ccccccCCcccEEEcCCCccCCCCcccc---cCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCC
Q 045549 4 EEVTQEVCRDIKIQFGKNSFDGIKKLPW---KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLS 77 (134)
Q Consensus 4 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~ 77 (134)
...+.++++|+.|++++|.++.+|...+ ++|++|++++|.+++..+.. +++|++|++++|.+++..+..+..+.
T Consensus 73 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 152 (477)
T 2id5_A 73 PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152 (477)
T ss_dssp TTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCT
T ss_pred hhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCC
Confidence 3456788999999999999988877543 88999999999988776654 78899999999999877777888877
Q ss_pred Cccc-------cccCC-ccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549 78 TIEI-------PWPIP-ETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 78 ~L~~-------~~~~~-~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
+|+. ...++ ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+
T Consensus 153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~ 214 (477)
T 2id5_A 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214 (477)
T ss_dssp TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC
T ss_pred CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc
Confidence 7776 12223 346677788888888887775555567777777777776665443
No 71
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.63 E-value=3.9e-15 Score=103.98 Aligned_cols=121 Identities=17% Similarity=0.123 Sum_probs=104.1
Q ss_pred cccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCC----CCCCccEEEcccCccccccCccccCCCCccc------
Q 045549 12 RDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLD----PSSNMKVFLISNNRFTREIPCLICNLSTIEI------ 81 (134)
Q Consensus 12 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~----~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~------ 81 (134)
.-+.++++++.++.+|..+...++.|++++|.+++..+. .+++|++|++++|++++..+..|..+++|+.
T Consensus 19 ~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 19 ASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp ETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 346899999999999998888899999999999987654 3789999999999999777788888888877
Q ss_pred --cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549 82 --PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132 (134)
Q Consensus 82 --~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 132 (134)
....+..+..+++|+.|++++|.+.+..|..|.++++|+.|++++|.+++.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l 151 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRF 151 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCee
Confidence 222344688899999999999999976688899999999999999999863
No 72
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.62 E-value=3.1e-15 Score=109.68 Aligned_cols=119 Identities=17% Similarity=0.148 Sum_probs=91.4
Q ss_pred CcccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc------
Q 045549 11 CRDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI------ 81 (134)
Q Consensus 11 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~------ 81 (134)
...+.+++++|.++++|..+.++++.|++++|.+++..+.. ++.|++|++++|++++..|..+..+++|+.
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp --CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CCCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 34467888888888888877788888888888888766543 778888888888888777778888777777
Q ss_pred -cccCCccCcCCCCCcEEEccCCcccc-CccccccCCCCCcEEEcCCCcccc
Q 045549 82 -PWPIPETLSKGSNLRTLNFNGNELVG-SVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 82 -~~~~~~~~~~~~~L~~l~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
...+|.. .+++|+.|++++|.+.+ ..|..++++++|+.|++++|.+++
T Consensus 111 ~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 111 RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 2345555 67888888888888885 235778888888888888888764
No 73
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.62 E-value=8.4e-15 Score=101.05 Aligned_cols=119 Identities=18% Similarity=0.277 Sum_probs=98.3
Q ss_pred CcccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc------
Q 045549 11 CRDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI------ 81 (134)
Q Consensus 11 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~------ 81 (134)
+.++.++++++.++.+|..+.++++.|++++|.+++..+.. ++.|++|++++|.+++..|..++.+++|+.
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 47899999999998899888889999999999998876643 889999999999999777888888888877
Q ss_pred -cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549 82 -PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 82 -~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
...+|..+. ++|+.|++++|.+.+..+..+.++++|+.|++++|.++.
T Consensus 113 ~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 161 (332)
T 2ft3_A 113 HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 161 (332)
T ss_dssp CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG
T ss_pred cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc
Confidence 334555544 789999999999985545568889999999999998853
No 74
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=2.3e-15 Score=92.81 Aligned_cols=108 Identities=22% Similarity=0.321 Sum_probs=75.2
Q ss_pred ccCCcccEEEcCCCccC--CCCccc--ccCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCccc
Q 045549 8 QEVCRDIKIQFGKNSFD--GIKKLP--WKNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEI 81 (134)
Q Consensus 8 ~~~~~L~~L~l~~n~l~--~~~~~~--~~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~ 81 (134)
...++++.|++++|.++ .+|..+ ++++++|++++|.+++. ... ++.|++|++++|.+++.+|..+.
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~------- 85 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAE------- 85 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHH-------
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhh-------
Confidence 34578999999999998 487754 48999999999999887 332 88999999999999854554433
Q ss_pred cccCCccCcCCCCCcEEEccCCccccC-ccccccCCCCCcEEEcCCCccccc
Q 045549 82 PWPIPETLSKGSNLRTLNFNGNELVGS-VPRSLLNCENLQVVDLGNNKIEDI 132 (134)
Q Consensus 82 ~~~~~~~~~~~~~L~~l~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~ 132 (134)
.+++|+.|++++|.+++. .+..+..+++|+.|++++|.+++.
T Consensus 86 ---------~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 128 (149)
T 2je0_A 86 ---------KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128 (149)
T ss_dssp ---------HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGS
T ss_pred ---------hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccch
Confidence 345555555555555531 124555555556666655555543
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.62 E-value=2.9e-15 Score=99.05 Aligned_cols=118 Identities=17% Similarity=0.139 Sum_probs=55.5
Q ss_pred cccEEEcCCCccCCCCccc---ccCCcEEEccCcc-cCCcCCCC---CCCccEEEccc-CccccccCccccCCCCccc--
Q 045549 12 RDIKIQFGKNSFDGIKKLP---WKNLEYLDFRSNL-LQGLFLDP---SSNMKVFLISN-NRFTREIPCLICNLSTIEI-- 81 (134)
Q Consensus 12 ~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~-l~~~~~~~---l~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~-- 81 (134)
+++.|++++|.+++++... ++++++|++++|. ++...+.. +++|++|++++ |.+++..+..+..+++|+.
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 4555555555555544422 2555555555554 44433322 45555555555 5555333344444444444
Q ss_pred -----cccCCccCcCCCCCc---EEEccCC-ccccCccccccCCCCCc-EEEcCCCccc
Q 045549 82 -----PWPIPETLSKGSNLR---TLNFNGN-ELVGSVPRSLLNCENLQ-VVDLGNNKIE 130 (134)
Q Consensus 82 -----~~~~~~~~~~~~~L~---~l~l~~n-~l~~~~p~~~~~l~~L~-~L~l~~n~l~ 130 (134)
...+|. ++.+++|+ .+++++| .+++..+..|.++++|+ .+++++|.++
T Consensus 112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 122333 44444444 5555555 44422223344555555 5555555444
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.62 E-value=2e-15 Score=99.78 Aligned_cols=125 Identities=12% Similarity=0.072 Sum_probs=63.5
Q ss_pred cccCCcccEEEcCC-CccCCCCccc---ccCCcEEEccCcccCCcCCCC-CCCcc---EEEcccC-ccccccCccccCCC
Q 045549 7 TQEVCRDIKIQFGK-NSFDGIKKLP---WKNLEYLDFRSNLLQGLFLDP-SSNMK---VFLISNN-RFTREIPCLICNLS 77 (134)
Q Consensus 7 ~~~~~~L~~L~l~~-n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~-l~~l~---~L~l~~n-~l~~~~~~~~~~l~ 77 (134)
+..+++|+.|++++ |.++.++... +++|++|++++|.+++...-. +++++ +|++++| .+++..+..+..+.
T Consensus 76 f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~ 155 (239)
T 2xwt_C 76 FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC 155 (239)
T ss_dssp EESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB
T ss_pred cCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchh
Confidence 33444444444444 4444433322 144455555555444422111 33333 5555555 55544444455555
Q ss_pred Ccc-c-------cccCCccCcCCCCCcEEEccCCc-cccCccccccCC-CCCcEEEcCCCcccc
Q 045549 78 TIE-I-------PWPIPETLSKGSNLRTLNFNGNE-LVGSVPRSLLNC-ENLQVVDLGNNKIED 131 (134)
Q Consensus 78 ~L~-~-------~~~~~~~~~~~~~L~~l~l~~n~-l~~~~p~~~~~l-~~L~~L~l~~n~l~~ 131 (134)
+|+ . ...+|......++|+.+++++|. +++..+..+.++ ++|+.|++++|++++
T Consensus 156 ~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 156 NETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp SSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred cceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc
Confidence 555 3 12334333233667777777773 663334556777 777777777777764
No 77
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.61 E-value=1.4e-15 Score=96.44 Aligned_cols=122 Identities=19% Similarity=0.226 Sum_probs=91.3
Q ss_pred cccCCcccEEEcCCCccCCCCccc-c-cCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCccc-
Q 045549 7 TQEVCRDIKIQFGKNSFDGIKKLP-W-KNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEI- 81 (134)
Q Consensus 7 ~~~~~~L~~L~l~~n~l~~~~~~~-~-~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~- 81 (134)
+...++++.|++++|.++.++... . +++++|++++|.+++. +.. ++.|++|++++|++++..+..+..+++|+.
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 346789999999999999886543 2 5999999999999986 333 889999999999999544344466666655
Q ss_pred ------cccCCc--cCcCCCCCcEEEccCCccccCcccc----ccCCCCCcEEEcCCCccc
Q 045549 82 ------PWPIPE--TLSKGSNLRTLNFNGNELVGSVPRS----LLNCENLQVVDLGNNKIE 130 (134)
Q Consensus 82 ------~~~~~~--~~~~~~~L~~l~l~~n~l~~~~p~~----~~~l~~L~~L~l~~n~l~ 130 (134)
...+|. .++.+++|+.+++++|.++ .+|.. +..+++|+.|++++|.+.
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 233444 5667788888888888887 55654 777888888888777653
No 78
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.61 E-value=6.9e-15 Score=103.41 Aligned_cols=127 Identities=13% Similarity=0.115 Sum_probs=94.8
Q ss_pred ccccccccCCcccEEEcCCCccCCCCcc-c--ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccC
Q 045549 2 LEEEVTQEVCRDIKIQFGKNSFDGIKKL-P--WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICN 75 (134)
Q Consensus 2 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~--~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~ 75 (134)
++..++..+++|++|++++|.+++++.. + .++|++|++++|.+++..+.. ++.|++|++++|.++...+..+..
T Consensus 60 l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 139 (390)
T 3o6n_A 60 LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 139 (390)
T ss_dssp ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcC
Confidence 4555677889999999999999886653 3 388999999999999877664 889999999999999444444677
Q ss_pred CCCccc--------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549 76 LSTIEI--------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 76 l~~L~~--------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
+++|+. ....+..++.+++|+.|++++|.+++. + +..+++|+.+++++|.+++
T Consensus 140 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~--~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C--GGGCTTCSEEECCSSCCSE
T ss_pred CCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c--cccccccceeecccccccc
Confidence 777777 233455688899999999999998843 2 4445555555555555443
No 79
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=6.8e-16 Score=118.22 Aligned_cols=121 Identities=20% Similarity=0.193 Sum_probs=62.6
Q ss_pred ccCCcccEEEcCCCccCC------------------CCccc----ccCCcEEEccCcccCCcCCCC---CCCccEEEccc
Q 045549 8 QEVCRDIKIQFGKNSFDG------------------IKKLP----WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISN 62 (134)
Q Consensus 8 ~~~~~L~~L~l~~n~l~~------------------~~~~~----~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~ 62 (134)
..+++|+.|++++|.+++ +|+.+ .++|++|++++|.+.+..|.. +++|++|++++
T Consensus 445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524 (876)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT
T ss_pred hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC
Confidence 355666666666666665 55543 255666666666655555543 55566666666
Q ss_pred Cc-ccc-ccCccccCCC-------Cccc-------cccCCc--cCcCCCCCcEEEccCCccccCccccccCCCCCcEEEc
Q 045549 63 NR-FTR-EIPCLICNLS-------TIEI-------PWPIPE--TLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDL 124 (134)
Q Consensus 63 n~-l~~-~~~~~~~~l~-------~L~~-------~~~~~~--~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l 124 (134)
|+ +++ .+|..++.+. +|+. ...+|. .++.+++|+.|++++|.+. .+| .++.+++|+.|++
T Consensus 525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~L 602 (876)
T 4ecn_A 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKL 602 (876)
T ss_dssp CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEEC
T ss_pred CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEEC
Confidence 65 554 4554443322 3333 123444 4445555555555555554 444 4444444555555
Q ss_pred CCCccc
Q 045549 125 GNNKIE 130 (134)
Q Consensus 125 ~~n~l~ 130 (134)
++|.++
T Consensus 603 s~N~l~ 608 (876)
T 4ecn_A 603 DYNQIE 608 (876)
T ss_dssp CSSCCS
T ss_pred cCCccc
Confidence 554444
No 80
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.60 E-value=8.5e-15 Score=111.91 Aligned_cols=128 Identities=13% Similarity=0.128 Sum_probs=99.8
Q ss_pred ccccCCcccEEEcCCCccCCC-Cccc--ccCCcEEEccCcccCCcC-CCC---CCCccEEEcccCccccccCccccCCCC
Q 045549 6 VTQEVCRDIKIQFGKNSFDGI-KKLP--WKNLEYLDFRSNLLQGLF-LDP---SSNMKVFLISNNRFTREIPCLICNLST 78 (134)
Q Consensus 6 ~~~~~~~L~~L~l~~n~l~~~-~~~~--~~~L~~L~l~~n~l~~~~-~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~ 78 (134)
+|.-.++++.|++++|.++++ +..+ ..+|++|++++|...+.+ |.. ++.|++|++++|.+.+..|..++.+.+
T Consensus 19 vP~lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 19 VPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp CCSSCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred CCCCCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence 444346889999999999884 4444 388999999999655444 333 889999999999999888999998888
Q ss_pred ccc--------cccCCcc--CcCCCCCcEEEccCCccccCcc-ccccCCCCCcEEEcCCCcccccC
Q 045549 79 IEI--------PWPIPET--LSKGSNLRTLNFNGNELVGSVP-RSLLNCENLQVVDLGNNKIEDIL 133 (134)
Q Consensus 79 L~~--------~~~~~~~--~~~~~~L~~l~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~ 133 (134)
|+. .+..+.. ++.+++|+.|++++|.+.+..+ ..++++++|+.|++++|.+++..
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~ 164 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC 164 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC
Confidence 877 2223443 7889999999999999986544 57899999999999999887653
No 81
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.60 E-value=1.8e-15 Score=104.00 Aligned_cols=118 Identities=15% Similarity=0.210 Sum_probs=65.6
Q ss_pred CCcccEEEcCCCccCCCCcc-c--ccCCcEEEccCcccCCcCCCC----CCCccEEEcccCccccccCccccCCCCccc-
Q 045549 10 VCRDIKIQFGKNSFDGIKKL-P--WKNLEYLDFRSNLLQGLFLDP----SSNMKVFLISNNRFTREIPCLICNLSTIEI- 81 (134)
Q Consensus 10 ~~~L~~L~l~~n~l~~~~~~-~--~~~L~~L~l~~n~l~~~~~~~----l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~- 81 (134)
+++|+.|++++|.+++++.. + .++|++|++++|.+++..+.. +++|++|++++|.+++. +.. ..+++|+.
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~-~~l~~L~~L 196 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQ-VVFAKLKTL 196 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECC-CCCTTCCEE
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-ccc-cccccCCEE
Confidence 44455555555555543322 1 255555555555555443322 45555555555555522 211 12333333
Q ss_pred ------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccc
Q 045549 82 ------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIE 130 (134)
Q Consensus 82 ------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 130 (134)
...+|..+..+++|+.|++++|.++ .+|..+..+++|+.+++++|.++
T Consensus 197 ~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 197 DLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp ECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred ECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 2234455666777777777777777 56767777777777777777776
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.60 E-value=2.1e-15 Score=109.15 Aligned_cols=40 Identities=23% Similarity=0.273 Sum_probs=25.3
Q ss_pred CCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549 91 KGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 91 ~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
.+++|+.|++++|.+++ +|..+..+++|+.|++++|.+++
T Consensus 189 ~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~ 228 (487)
T 3oja_A 189 VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL 228 (487)
T ss_dssp CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE
T ss_pred cCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc
Confidence 35666666666666663 34446666667777777776665
No 83
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.60 E-value=1.4e-15 Score=104.22 Aligned_cols=124 Identities=15% Similarity=0.084 Sum_probs=95.5
Q ss_pred cCCcccEEEcCCCccCC-CCccc----ccCCcEEEccCcccCCcCCCC---C-----CCccEEEcccCccccccCccccC
Q 045549 9 EVCRDIKIQFGKNSFDG-IKKLP----WKNLEYLDFRSNLLQGLFLDP---S-----SNMKVFLISNNRFTREIPCLICN 75 (134)
Q Consensus 9 ~~~~L~~L~l~~n~l~~-~~~~~----~~~L~~L~l~~n~l~~~~~~~---l-----~~l~~L~l~~n~l~~~~~~~~~~ 75 (134)
.+++|++|++++|.+++ +|..+ .++|++|++++|++++. |.. + ++|++|++++|++++..+..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 58899999999999997 77754 38999999999999987 543 3 89999999999999777789998
Q ss_pred CCCccc----ccc------CCccC--cCCCCCcEEEccCCcccc--Ccc-ccccCCCCCcEEEcCCCcccccC
Q 045549 76 LSTIEI----PWP------IPETL--SKGSNLRTLNFNGNELVG--SVP-RSLLNCENLQVVDLGNNKIEDIL 133 (134)
Q Consensus 76 l~~L~~----~~~------~~~~~--~~~~~L~~l~l~~n~l~~--~~p-~~~~~l~~L~~L~l~~n~l~~~~ 133 (134)
+++|+. ... .+..+ +.+++|+.|++++|.+++ .++ ..+.++++|+.|++++|.+++.+
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence 888877 111 23333 677888888888888872 112 23457778888888888877743
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.59 E-value=2e-14 Score=98.49 Aligned_cols=59 Identities=15% Similarity=0.226 Sum_probs=27.4
Q ss_pred ccCCcccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccc
Q 045549 8 QEVCRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFT 66 (134)
Q Consensus 8 ~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~ 66 (134)
..+++|+.|++++|.+++++... +++|++|++++|.+++...-. +++|++|++++|+++
T Consensus 60 ~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~ 120 (308)
T 1h6u_A 60 QYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQIT 120 (308)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCC
T ss_pred hccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCC
Confidence 34555555555555555544311 245555555555544432111 444444444444444
No 85
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=1.8e-15 Score=109.52 Aligned_cols=78 Identities=19% Similarity=0.130 Sum_probs=35.3
Q ss_pred CCccEEEcccCccccccCccccCCCCccc--------cccCCccCc-CCCCCcEEEccCCccccCccccccCCCCCcEEE
Q 045549 53 SNMKVFLISNNRFTREIPCLICNLSTIEI--------PWPIPETLS-KGSNLRTLNFNGNELVGSVPRSLLNCENLQVVD 123 (134)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--------~~~~~~~~~-~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ 123 (134)
++|++|++++|.+++..|..++.+++|+. .+..|..+. .+++|+.|++++|.+++. |. ...+++|+.|+
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~ 197 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLD 197 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEE
T ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEE
Confidence 34444444444444444444444444433 112233332 345555555555555532 21 22355555555
Q ss_pred cCCCccccc
Q 045549 124 LGNNKIEDI 132 (134)
Q Consensus 124 l~~n~l~~~ 132 (134)
+++|.+++.
T Consensus 198 Ls~N~l~~~ 206 (487)
T 3oja_A 198 LSSNKLAFM 206 (487)
T ss_dssp CCSSCCCEE
T ss_pred CCCCCCCCC
Confidence 555555543
No 86
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.59 E-value=1e-14 Score=106.92 Aligned_cols=123 Identities=23% Similarity=0.282 Sum_probs=69.0
Q ss_pred cCCcccEEEcCCCccCCCCcc---c--ccCCcEEEccCcccCCcCCCC----CCCccEEEcccCccccccCcccc-CCCC
Q 045549 9 EVCRDIKIQFGKNSFDGIKKL---P--WKNLEYLDFRSNLLQGLFLDP----SSNMKVFLISNNRFTREIPCLIC-NLST 78 (134)
Q Consensus 9 ~~~~L~~L~l~~n~l~~~~~~---~--~~~L~~L~l~~n~l~~~~~~~----l~~l~~L~l~~n~l~~~~~~~~~-~l~~ 78 (134)
.+++|+.|++++|.+++++.. + .++++.|++++|.+++..|.. +++|++|++++|++++..|..+. .+..
T Consensus 375 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~ 454 (562)
T 3a79_B 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKV 454 (562)
T ss_dssp SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSE
T ss_pred ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCE
Confidence 444555555555555443321 1 145555555555555422221 45555555555555544444442 3333
Q ss_pred ccc----cccCCccCcCCCCCcEEEccCCccccCcccc-ccCCCCCcEEEcCCCccccc
Q 045549 79 IEI----PWPIPETLSKGSNLRTLNFNGNELVGSVPRS-LLNCENLQVVDLGNNKIEDI 132 (134)
Q Consensus 79 L~~----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~~ 132 (134)
|.. ...+|..+..+++|+.|++++|+++ .+|.. +..+++|+.+++++|.+++.
T Consensus 455 L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 455 LDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp EECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred EECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 322 3356666667777777888777777 55654 77777777788887777653
No 87
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=1.6e-14 Score=110.70 Aligned_cols=122 Identities=13% Similarity=0.214 Sum_probs=84.4
Q ss_pred CcccEEEcCCCccCCCCcccc---cCCcEEEccCcccCCcCCCCC----------CCccEEEcccCccccccCcccc--C
Q 045549 11 CRDIKIQFGKNSFDGIKKLPW---KNLEYLDFRSNLLQGLFLDPS----------SNMKVFLISNNRFTREIPCLIC--N 75 (134)
Q Consensus 11 ~~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~n~l~~~~~~~l----------~~l~~L~l~~n~l~~~~~~~~~--~ 75 (134)
++|+.|++++|.++.+|..++ ++|+.|++++|.++.+..... ++|++|++++|+++ .+|..+. .
T Consensus 673 ~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~ 751 (876)
T 4ecn_A 673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATT 751 (876)
T ss_dssp CCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTT
T ss_pred CCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhcc
Confidence 367777777777777766543 677888888887774333221 16788888888877 6776665 6
Q ss_pred CCCccc-------cccCCccCcCCCCCcEEEccC------CccccCccccccCCCCCcEEEcCCCcccccCC
Q 045549 76 LSTIEI-------PWPIPETLSKGSNLRTLNFNG------NELVGSVPRSLLNCENLQVVDLGNNKIEDILH 134 (134)
Q Consensus 76 l~~L~~-------~~~~~~~~~~~~~L~~l~l~~------n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~ 134 (134)
+++|+. ...+|..++.+++|+.|++++ |.+.+.+|..+.++++|+.|++++|.+ +.+|
T Consensus 752 l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip 822 (876)
T 4ecn_A 752 LPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVD 822 (876)
T ss_dssp CTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred CCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccC
Confidence 666655 234677777778888887765 666767777777888888888888877 5554
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.58 E-value=2.1e-14 Score=98.38 Aligned_cols=121 Identities=21% Similarity=0.329 Sum_probs=70.1
Q ss_pred cccCCcccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccc---
Q 045549 7 TQEVCRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEI--- 81 (134)
Q Consensus 7 ~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--- 81 (134)
+..+++|+.|++++|.+++++... .++|+.|++++|.+++..+-. +++|++|++++|.+++. +. +..+++|+.
T Consensus 81 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l 158 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSI 158 (308)
T ss_dssp GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEEC
T ss_pred HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEc
Confidence 345666666777666666654321 266666777766666543322 66666677766666633 22 445555544
Q ss_pred ----cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549 82 ----PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132 (134)
Q Consensus 82 ----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 132 (134)
...++. +..+++|+.|++++|.+++ ++. +..+++|+.|++++|.+++.
T Consensus 159 ~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~~ 210 (308)
T 1h6u_A 159 GNAQVSDLTP-LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDV 210 (308)
T ss_dssp CSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBC
T ss_pred cCCcCCCChh-hcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCcc
Confidence 112222 5566667777777776663 332 56666777777777766654
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.58 E-value=3.1e-14 Score=96.83 Aligned_cols=119 Identities=26% Similarity=0.284 Sum_probs=62.5
Q ss_pred ccCCcccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccc----
Q 045549 8 QEVCRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEI---- 81 (134)
Q Consensus 8 ~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~---- 81 (134)
..+++|+.|++++|.+++++... +++|++|++++|.+++...-. +++|++|++++|++++ + ..+..+++|+.
T Consensus 65 ~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~ 142 (291)
T 1h6t_A 65 QYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLG 142 (291)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECC
T ss_pred hcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEcc
Confidence 34556666666666665544311 255666666666655532211 5566666666666553 2 23444444444
Q ss_pred ---cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549 82 ---PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 82 ---~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
...+ ..++.+++|+.|++++|.+++. +. +..+++|+.|++++|.+++
T Consensus 143 ~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~-~~-l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 143 NNKITDI-TVLSRLTKLDTLSLEDNQISDI-VP-LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp SSCCCCC-GGGGGCTTCSEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCB
T ss_pred CCcCCcc-hhhccCCCCCEEEccCCccccc-hh-hcCCCccCEEECCCCcCCC
Confidence 1112 3445556666666666666532 22 5566666666666665554
No 90
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=2e-14 Score=105.88 Aligned_cols=104 Identities=18% Similarity=0.234 Sum_probs=80.4
Q ss_pred cccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccccccCCc
Q 045549 12 RDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPE 87 (134)
Q Consensus 12 ~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~ 87 (134)
.|+.|++++|.++++|... +++|+.|++++|.++.+ |.. +++|++|++++|.+++ +|
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~-----------------lp- 502 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALEN-----------------VD- 502 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCC-----------------CG-
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCccccccc-chhhhcCCCCCEEECCCCCCCC-----------------Cc-
Confidence 4677788888777777621 26778888888877743 333 7778888888877772 34
Q ss_pred cCcCCCCCcEEEccCCccccCc-cccccCCCCCcEEEcCCCcccccCC
Q 045549 88 TLSKGSNLRTLNFNGNELVGSV-PRSLLNCENLQVVDLGNNKIEDILH 134 (134)
Q Consensus 88 ~~~~~~~L~~l~l~~n~l~~~~-p~~~~~l~~L~~L~l~~n~l~~~~~ 134 (134)
.++.+++|+.|++++|.+++.. |..++.+++|+.|++++|.+++..|
T Consensus 503 ~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 6778899999999999999665 8899999999999999999988753
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.57 E-value=3.3e-15 Score=102.31 Aligned_cols=37 Identities=11% Similarity=-0.064 Sum_probs=21.4
Q ss_pred cCCcccEEEcCCCccCCCCccc---ccCCcEEEccCcccC
Q 045549 9 EVCRDIKIQFGKNSFDGIKKLP---WKNLEYLDFRSNLLQ 45 (134)
Q Consensus 9 ~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~ 45 (134)
.+++|+.|++++|.+.+++... .++|++|++++|++.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 182 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGL 182 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTC
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCc
Confidence 4566666666666665544322 256666666666543
No 92
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.57 E-value=1.8e-14 Score=106.08 Aligned_cols=113 Identities=16% Similarity=0.259 Sum_probs=67.6
Q ss_pred cccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCCCCCccEEEcccCccccccCccccCCCCccc-------ccc
Q 045549 12 RDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEI-------PWP 84 (134)
Q Consensus 12 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-------~~~ 84 (134)
+|+.|++++|.++++|. .+++|+.|++++|.+++ +|..+++|++|++++|.+++ +|. +. ++|+. ...
T Consensus 121 ~L~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~ 194 (571)
T 3cvr_A 121 SLKHLDVDNNQLTMLPE-LPALLEYINADNNQLTM-LPELPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLES 194 (571)
T ss_dssp TCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSS
T ss_pred CCCEEECCCCcCCCCCC-cCccccEEeCCCCccCc-CCCcCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCc
Confidence 44444444444444444 33455555555555554 22235566666666666663 554 33 33333 224
Q ss_pred CCccCcCCCCC-------cEEEccCCccccCccccccCCCCCcEEEcCCCcccccCC
Q 045549 85 IPETLSKGSNL-------RTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDILH 134 (134)
Q Consensus 85 ~~~~~~~~~~L-------~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~ 134 (134)
+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|.+++.+|
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 454 433 56 88899999888 678888889999999999999987653
No 93
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.57 E-value=9.6e-15 Score=111.62 Aligned_cols=127 Identities=16% Similarity=0.117 Sum_probs=79.7
Q ss_pred cccccCCcccEEEcCCCccCC-CCc-cc--ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCcc--ccC
Q 045549 5 EVTQEVCRDIKIQFGKNSFDG-IKK-LP--WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCL--ICN 75 (134)
Q Consensus 5 ~~~~~~~~L~~L~l~~n~l~~-~~~-~~--~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~--~~~ 75 (134)
..+..+++|++|++++|.... ++. .+ .++|++|++++|.+++..|.. +++|++|++++|.+++..+.. ++.
T Consensus 42 ~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 42 SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121 (844)
T ss_dssp SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccc
Confidence 345677777888887775544 533 33 277777888877777765554 677777788777777655543 666
Q ss_pred CCCccc--------ccc-CCccCcCCCCCcEEEccCCccccCccccccCC--CCCcEEEcCCCcccc
Q 045549 76 LSTIEI--------PWP-IPETLSKGSNLRTLNFNGNELVGSVPRSLLNC--ENLQVVDLGNNKIED 131 (134)
Q Consensus 76 l~~L~~--------~~~-~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l--~~L~~L~l~~n~l~~ 131 (134)
+++|+. ... .+..++.+++|+.|++++|.+.+..+..+..+ ++|+.|++++|.+++
T Consensus 122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~ 188 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS 188 (844)
T ss_dssp CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCC
T ss_pred cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccc
Confidence 666666 111 22456777777777777777776555555544 445555555444444
No 94
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.56 E-value=2.1e-14 Score=104.21 Aligned_cols=99 Identities=24% Similarity=0.244 Sum_probs=53.0
Q ss_pred cCCcEEEccCcccCCcCCCC----CCCccEEEcccCccccccCcccc-CCCCccc----cccCCccCcCCCCCcEEEccC
Q 045549 32 KNLEYLDFRSNLLQGLFLDP----SSNMKVFLISNNRFTREIPCLIC-NLSTIEI----PWPIPETLSKGSNLRTLNFNG 102 (134)
Q Consensus 32 ~~L~~L~l~~n~l~~~~~~~----l~~l~~L~l~~n~l~~~~~~~~~-~l~~L~~----~~~~~~~~~~~~~L~~l~l~~ 102 (134)
++|++|++++|.+++..|.. +++|++|++++|.+++..|..+. .+..|.. ...+|..+..+++|+.|++++
T Consensus 374 ~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~ 453 (520)
T 2z7x_B 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVAS 453 (520)
T ss_dssp TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS
T ss_pred CCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCC
Confidence 44444444444444422211 34455555555554444443332 2222222 234566556677777777777
Q ss_pred CccccCcccc-ccCCCCCcEEEcCCCcccc
Q 045549 103 NELVGSVPRS-LLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 103 n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~ 131 (134)
|.++ .+|.. +..+++|+.+++++|.+++
T Consensus 454 N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 454 NQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CcCC-ccCHHHhccCCcccEEECcCCCCcc
Confidence 7777 45554 6677777777777777765
No 95
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.55 E-value=4.2e-14 Score=94.94 Aligned_cols=118 Identities=18% Similarity=0.247 Sum_probs=70.3
Q ss_pred ccCCcccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccc----
Q 045549 8 QEVCRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEI---- 81 (134)
Q Consensus 8 ~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~---- 81 (134)
..+++|+.|++++|.++.++... +++|+.|++++|++++..+-. ++.|++|++++|++++ ++.... .+|+.
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~-l~~~~~--~~L~~L~L~ 114 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKN-LNGIPS--ACLSRLFLD 114 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSC-CTTCCC--SSCCEEECC
T ss_pred hhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCC-cCcccc--CcccEEEcc
Confidence 45667777777777777666322 367777777777777655422 6677777777777763 332211 33333
Q ss_pred ---cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549 82 ---PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 82 ---~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
...+ +.++.+++|+.|++++|++++ ++ .+..+++|+.|++++|.+++
T Consensus 115 ~N~l~~~-~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 115 NNELRDT-DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp SSCCSBS-GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCB
T ss_pred CCccCCC-hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcc
Confidence 1122 235566666667776666663 33 46666666666666666654
No 96
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.55 E-value=6.1e-14 Score=94.17 Aligned_cols=121 Identities=23% Similarity=0.292 Sum_probs=98.7
Q ss_pred cccCCcccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCCCCCccEEEcccCccccccCccccCCCCccc----
Q 045549 7 TQEVCRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEI---- 81 (134)
Q Consensus 7 ~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~---- 81 (134)
+..+++|+.|++++|.+++++... .++|+.|++++|++++..+...+.|++|++++|++++ ++ .+..+++|+.
T Consensus 59 l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls 136 (263)
T 1xeu_A 59 MQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRD-TD-SLIHLKNLEILSIR 136 (263)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTCCCSSCCEEECCSSCCSB-SG-GGTTCTTCCEEECT
T ss_pred HhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCccccCcccEEEccCCccCC-Ch-hhcCcccccEEECC
Confidence 467899999999999999877622 3899999999999988543335889999999999994 43 5777777777
Q ss_pred ---cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549 82 ---PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132 (134)
Q Consensus 82 ---~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 132 (134)
...++ .++.+++|+.|++++|.+++. ..+..+++|+.|++++|.+++.
T Consensus 137 ~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 137 NNKLKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TSCCCBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCcCCCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 22333 578899999999999999955 6789999999999999998754
No 97
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.54 E-value=1.7e-14 Score=99.10 Aligned_cols=118 Identities=14% Similarity=0.088 Sum_probs=76.2
Q ss_pred cccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCcccc-CCCCccc------
Q 045549 12 RDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLIC-NLSTIEI------ 81 (134)
Q Consensus 12 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~-~l~~L~~------ 81 (134)
+|+.|++++|.+++++...+++++.|++++|++++..+.. +++|++|++++|.+++..+..+. .+++|+.
T Consensus 100 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 100 SIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp TCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred CcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence 3444444444444333333466777777777777654433 67788888888887765555553 4555555
Q ss_pred -cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549 82 -PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 82 -~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
...++ ....+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++
T Consensus 180 ~l~~~~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~ 228 (317)
T 3o53_A 180 FIYDVK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL 228 (317)
T ss_dssp CCCEEE-CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCE
T ss_pred cCcccc-cccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCcccc
Confidence 12222 2234788889999999888 556668888899999999998875
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.54 E-value=4.7e-14 Score=95.98 Aligned_cols=120 Identities=17% Similarity=0.210 Sum_probs=97.8
Q ss_pred cccCCcccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccc---
Q 045549 7 TQEVCRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEI--- 81 (134)
Q Consensus 7 ~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--- 81 (134)
+..+++|+.|++++|.+++++... +++|+.|++++|.+++...-. +++|++|++++|.+++. ..+..+++|+.
T Consensus 86 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 163 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSL 163 (291)
T ss_dssp GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEc
Confidence 567899999999999998876532 389999999999998863222 89999999999999854 56777777776
Q ss_pred ----cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549 82 ----PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 82 ----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
...++. +..+++|+.|++++|.++ .++ .+..+++|+.|++++|.++.
T Consensus 164 ~~N~l~~~~~-l~~l~~L~~L~L~~N~i~-~l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 164 EDNQISDIVP-LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CSSCCCCCGG-GTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEEEEEEC
T ss_pred cCCccccchh-hcCCCccCEEECCCCcCC-CCh-hhccCCCCCEEECcCCcccC
Confidence 223333 788999999999999999 455 48999999999999998864
No 99
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.53 E-value=1.3e-14 Score=99.32 Aligned_cols=123 Identities=15% Similarity=0.102 Sum_probs=75.0
Q ss_pred ccCCcccEEEcCCCccCC-CCcc--c----ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccc--c--Cccc
Q 045549 8 QEVCRDIKIQFGKNSFDG-IKKL--P----WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTRE--I--PCLI 73 (134)
Q Consensus 8 ~~~~~L~~L~l~~n~l~~-~~~~--~----~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~--~--~~~~ 73 (134)
..+++|+.|++++|.+++ .+.. . .++|++|++++|.+++..+.. ++.|++|++++|++.+. . +..+
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 567788888888888876 3311 1 378888888888887766554 77888888888886531 1 1222
Q ss_pred cCCCCccc-------cccCCc----cCcCCCCCcEEEccCCccccCccccccCC---CCCcEEEcCCCccc
Q 045549 74 CNLSTIEI-------PWPIPE----TLSKGSNLRTLNFNGNELVGSVPRSLLNC---ENLQVVDLGNNKIE 130 (134)
Q Consensus 74 ~~l~~L~~-------~~~~~~----~~~~~~~L~~l~l~~n~l~~~~p~~~~~l---~~L~~L~l~~n~l~ 130 (134)
..+++|+. ...++. .++.+++|+.|++++|.+.+..|..+..+ ++|+.|++++|+++
T Consensus 194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence 34444444 111121 13445666666666666665555555554 46666666666665
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.53 E-value=1.6e-13 Score=101.69 Aligned_cols=120 Identities=28% Similarity=0.320 Sum_probs=63.4
Q ss_pred cccCCcccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccc---
Q 045549 7 TQEVCRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEI--- 81 (134)
Q Consensus 7 ~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--- 81 (134)
+..+++|+.|++++|.+.+++... +++|+.|++++|.+++...-. ++.|++|++++|.+++ + ..+..+++|+.
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~L 138 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYL 138 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEEC
T ss_pred HccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEEC
Confidence 345667777777777776654421 366666666666666532211 5666666666666653 2 23444444444
Q ss_pred ----cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549 82 ----PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 82 ----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
...+ ..++.+++|+.|++++|.+.+..| +..+++|+.|++++|.|++
T Consensus 139 s~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 139 GNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp CSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred CCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 1111 234455555555555555553322 4555555555555555543
No 101
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.52 E-value=1.7e-13 Score=87.94 Aligned_cols=99 Identities=15% Similarity=0.255 Sum_probs=84.4
Q ss_pred cccEEEcCCCccCCCCcc--c--ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc---
Q 045549 12 RDIKIQFGKNSFDGIKKL--P--WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI--- 81 (134)
Q Consensus 12 ~L~~L~l~~n~l~~~~~~--~--~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--- 81 (134)
+++.|++++|.+++++.. + .++|++|++++|.+++..|.. ++.|++|++++|++++..+..+..+++|+.
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 899999999999986653 3 389999999999999987765 889999999999999888888888888877
Q ss_pred -----cccCCccCcCCCCCcEEEccCCccccCcc
Q 045549 82 -----PWPIPETLSKGSNLRTLNFNGNELVGSVP 110 (134)
Q Consensus 82 -----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p 110 (134)
....|..++.+++|+.+++++|.+.+..+
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 34557889999999999999999986544
No 102
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.52 E-value=9.7e-14 Score=96.00 Aligned_cols=99 Identities=24% Similarity=0.253 Sum_probs=57.1
Q ss_pred cCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccc-------cccCCccCcCCCCCcEEEccCC
Q 045549 32 KNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEI-------PWPIPETLSKGSNLRTLNFNGN 103 (134)
Q Consensus 32 ~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-------~~~~~~~~~~~~~L~~l~l~~n 103 (134)
++++.|++++|.+++..+-. +++|++|++++|.+++ + ..+..+++|+. ...+ +.+..+++|+.|++++|
T Consensus 221 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 221 TRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNN 297 (347)
T ss_dssp TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS
T ss_pred CcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCC
Confidence 55555666666555543322 5566666666666553 2 23444444444 1112 23556677777777777
Q ss_pred ccccCccccccCCCCCcEEEcCCCcccccC
Q 045549 104 ELVGSVPRSLLNCENLQVVDLGNNKIEDIL 133 (134)
Q Consensus 104 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 133 (134)
.+.+..+..+..+++|+.|++++|.+++..
T Consensus 298 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 327 (347)
T 4fmz_A 298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327 (347)
T ss_dssp CCCGGGHHHHHTCTTCSEEECCSSSCCCCG
T ss_pred cCCCcChhHhhccccCCEEEccCCcccccc
Confidence 776555666777777777777777776653
No 103
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.51 E-value=1.3e-13 Score=102.43 Aligned_cols=116 Identities=24% Similarity=0.338 Sum_probs=74.7
Q ss_pred CcccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCCCCCccEEEcccCccccccCccccCCCCccc----cccCC
Q 045549 11 CRDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEI----PWPIP 86 (134)
Q Consensus 11 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~----~~~~~ 86 (134)
++|+.|++++|.++++|... ++++.|++++|.++. +|..+++|++|++++|.++ .+|..+.++..|.. ...+|
T Consensus 181 ~~L~~L~Ls~N~l~~l~~~~-~~L~~L~L~~N~l~~-l~~~~~~L~~L~Ls~N~L~-~lp~~l~~L~~L~Ls~N~L~~lp 257 (622)
T 3g06_A 181 SGLQELSVSDNQLASLPTLP-SELYKLWAYNNRLTS-LPALPSGLKELIVSGNRLT-SLPVLPSELKELMVSGNRLTSLP 257 (622)
T ss_dssp TTCCEEECCSSCCSCCCCCC-TTCCEEECCSSCCSS-CCCCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSCCC
T ss_pred CCCcEEECCCCCCCCCCCcc-chhhEEECcCCcccc-cCCCCCCCCEEEccCCccC-cCCCCCCcCcEEECCCCCCCcCC
Confidence 34444444444444433321 344444444444443 2222467888888888887 46644444444444 22344
Q ss_pred ccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccC
Q 045549 87 ETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDIL 133 (134)
Q Consensus 87 ~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 133 (134)
. .+++|+.|++++|.++ .+|..+.++++|+.|++++|.+++.+
T Consensus 258 ~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 258 M---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp C---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHH
T ss_pred c---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcC
Confidence 4 5688999999999999 78999999999999999999998764
No 104
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.51 E-value=7.6e-14 Score=96.56 Aligned_cols=120 Identities=20% Similarity=0.315 Sum_probs=94.7
Q ss_pred cccCCcccEEEcCCCccCCCCcc-cccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccc---
Q 045549 7 TQEVCRDIKIQFGKNSFDGIKKL-PWKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEI--- 81 (134)
Q Consensus 7 ~~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--- 81 (134)
+..+++|+.|++++|.+++++.. ..++++.|++++|.+++...-. +++|++|++++|.+++ + ..+..+++|+.
T Consensus 217 ~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L 294 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFL 294 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEEC
T ss_pred hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEEC
Confidence 56788999999999999886652 2489999999999988753222 8999999999999985 3 45666777666
Q ss_pred -----cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccc
Q 045549 82 -----PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIE 130 (134)
Q Consensus 82 -----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 130 (134)
....+..++.+++|+.+++++|.+++..| +..+++|+.+++++|.|+
T Consensus 295 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 23445667889999999999999996544 889999999999999986
No 105
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=2.9e-14 Score=87.88 Aligned_cols=106 Identities=20% Similarity=0.176 Sum_probs=85.6
Q ss_pred ccccCCcccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc
Q 045549 6 VTQEVCRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI 81 (134)
Q Consensus 6 ~~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~ 81 (134)
.+..+++|+.|++++|.+++++... .+++++|++++|.+++..|.. +++|++|++++|.+++. +
T Consensus 37 ~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~-~----------- 104 (149)
T 2je0_A 37 LTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL-S----------- 104 (149)
T ss_dssp CCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSH-H-----------
T ss_pred HHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCCh-H-----------
Confidence 3467899999999999998872221 389999999999999865554 89999999999998832 1
Q ss_pred cccCCccCcCCCCCcEEEccCCccccCcc---ccccCCCCCcEEEcCC
Q 045549 82 PWPIPETLSKGSNLRTLNFNGNELVGSVP---RSLLNCENLQVVDLGN 126 (134)
Q Consensus 82 ~~~~~~~~~~~~~L~~l~l~~n~l~~~~p---~~~~~l~~L~~L~l~~ 126 (134)
.+..++.+++|+.+++++|.+++..+ ..+..+++|+.|++++
T Consensus 105 ---~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 105 ---TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ---HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ---HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 13467778999999999999995543 3789999999999864
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.50 E-value=2.5e-13 Score=100.67 Aligned_cols=121 Identities=17% Similarity=0.204 Sum_probs=99.2
Q ss_pred cccCCcccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccc---
Q 045549 7 TQEVCRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEI--- 81 (134)
Q Consensus 7 ~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--- 81 (134)
+..+++|+.|++++|.+.+++... +++|+.|++++|.+++...-. +++|+.|++++|.+++. ..++.+++|+.
T Consensus 83 l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~L 160 (605)
T 1m9s_A 83 LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSL 160 (605)
T ss_dssp GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEEC
T ss_pred hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCc--hhhcccCCCCEEEC
Confidence 568899999999999998877433 489999999999998753322 89999999999999954 66777777776
Q ss_pred ----cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549 82 ----PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132 (134)
Q Consensus 82 ----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 132 (134)
...++. +..+++|+.|++++|.+++ ++ .+..+++|+.|++++|.+.+.
T Consensus 161 s~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 161 EDNQISDIVP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CSSCCCCCGG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECC
T ss_pred cCCcCCCchh-hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCC
Confidence 223333 7889999999999999995 44 689999999999999998764
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.49 E-value=4.9e-13 Score=98.51 Aligned_cols=110 Identities=18% Similarity=0.285 Sum_probs=55.8
Q ss_pred cccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCCCCCccEEEcccCccccccCcccc-CCCCccc----cccCC
Q 045549 12 RDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLIC-NLSTIEI----PWPIP 86 (134)
Q Consensus 12 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~l~~n~l~~~~~~~~~-~l~~L~~----~~~~~ 86 (134)
+++.|++++|.++++|..+++++++|++++|.++.+ |..+++|++|++++|.+++ +|. +. .+..|.. ...+|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~i-p~~l~~L~~L~Ls~N~l~~-ip~-l~~~L~~L~Ls~N~l~~lp 136 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISL-PELPASLEYLDACDNRLST-LPE-LPASLKHLDVDNNQLTMLP 136 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCC-CCCCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCSCCC
T ss_pred CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCccc-ccccCCCCEEEccCCCCCC-cch-hhcCCCEEECCCCcCCCCC
Confidence 566666666666666665556666666666666643 3335666666666666663 444 33 2222222 11233
Q ss_pred ccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549 87 ETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 87 ~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
. .+++|+.|++++|.+++ +|. .+++|+.|++++|.+++
T Consensus 137 ~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~ 174 (571)
T 3cvr_A 137 E---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF 174 (571)
T ss_dssp C---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred C---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC
Confidence 3 34445555555555542 333 33444444444444443
No 108
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.48 E-value=4e-13 Score=96.56 Aligned_cols=40 Identities=18% Similarity=0.273 Sum_probs=17.6
Q ss_pred cCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549 90 SKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 90 ~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
..+++|+.|++++|.+++..| +..+++|+.|++++|.+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 350 ANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred ccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 334444444444444443322 4444444444444444443
No 109
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.47 E-value=1.2e-12 Score=94.20 Aligned_cols=57 Identities=18% Similarity=0.220 Sum_probs=22.5
Q ss_pred CCcccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCCCCCccEEEcccCccc
Q 045549 10 VCRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFT 66 (134)
Q Consensus 10 ~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~l~~L~l~~n~l~ 66 (134)
+++|+.|++++|.++++|... ++++++|++++|.+++.....++.|++|++++|.++
T Consensus 41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~ 98 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLT 98 (457)
T ss_dssp HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCS
T ss_pred cCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCc
Confidence 344444444444444443211 144444444444444332111334444444444443
No 110
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.47 E-value=1.6e-12 Score=93.48 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=21.1
Q ss_pred CcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549 89 LSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 89 ~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
++.+++|+.|++++|++++ +| +..+++|+.|++++|.+++
T Consensus 208 l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 208 LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence 3444555555555555553 33 4555555555555555554
No 111
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.46 E-value=6.3e-13 Score=95.53 Aligned_cols=40 Identities=30% Similarity=0.331 Sum_probs=17.1
Q ss_pred cCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549 90 SKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 90 ~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
..+++|+.|++++|.+.+. +. +..+++|+.|++++|.+++
T Consensus 284 ~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 284 AGLTALTNLELNENQLEDI-SP-ISNLKNLTYLTLYFNNISD 323 (466)
T ss_dssp TTCTTCSEEECCSSCCSCC-GG-GGGCTTCSEEECCSSCCSC
T ss_pred cCCCccCeEEcCCCcccCc-hh-hcCCCCCCEEECcCCcCCC
Confidence 3444444444444444422 11 3444444444444444443
No 112
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.45 E-value=2.1e-12 Score=92.76 Aligned_cols=36 Identities=25% Similarity=0.306 Sum_probs=21.5
Q ss_pred CCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549 94 NLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 94 ~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
+|+.|++++|.++ .+|. ++.+++|+.|++++|++++
T Consensus 216 ~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 216 SLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp TCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS
T ss_pred cccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc
Confidence 4555555555555 4453 5666667777777776665
No 113
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.44 E-value=2.2e-12 Score=92.67 Aligned_cols=116 Identities=23% Similarity=0.306 Sum_probs=58.5
Q ss_pred ccCCcccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCccc----
Q 045549 8 QEVCRDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEI---- 81 (134)
Q Consensus 8 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~---- 81 (134)
..+++|++|++++|.++++|... .++++|++++|.+++. |.. +++|++|++++|.++ .+|.....+..|..
T Consensus 150 ~~l~~L~~L~l~~N~l~~lp~~~-~~L~~L~L~~n~l~~l-~~~~~l~~L~~L~l~~N~l~-~l~~~~~~L~~L~l~~n~ 226 (454)
T 1jl5_A 150 QNSSFLKIIDVDNNSLKKLPDLP-PSLEFIAAGNNQLEEL-PELQNLPFLTAIYADNNSLK-KLPDLPLSLESIVAGNNI 226 (454)
T ss_dssp TTCTTCCEEECCSSCCSCCCCCC-TTCCEEECCSSCCSSC-CCCTTCTTCCEEECCSSCCS-SCCCCCTTCCEEECCSSC
T ss_pred CCCCCCCEEECCCCcCcccCCCc-ccccEEECcCCcCCcC-ccccCCCCCCEEECCCCcCC-cCCCCcCcccEEECcCCc
Confidence 34445555555555554444332 3455555555555542 222 555555555555555 23333333333322
Q ss_pred cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549 82 PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 82 ~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
...+| .++.+++|+.|++++|+++ .+|.. +++|+.|++++|.+++
T Consensus 227 l~~lp-~~~~l~~L~~L~l~~N~l~-~l~~~---~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 227 LEELP-ELQNLPFLTTIYADNNLLK-TLPDL---PPSLEALNVRDNYLTD 271 (454)
T ss_dssp CSSCC-CCTTCTTCCEEECCSSCCS-SCCSC---CTTCCEEECCSSCCSC
T ss_pred CCccc-ccCCCCCCCEEECCCCcCC-ccccc---ccccCEEECCCCcccc
Confidence 22445 3667777888888888777 34432 2445555555555544
No 114
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.44 E-value=1.3e-14 Score=109.50 Aligned_cols=114 Identities=22% Similarity=0.201 Sum_probs=85.1
Q ss_pred ccccccccCCcccEEEcCCCccCCCCcccc--cCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCC
Q 045549 2 LEEEVTQEVCRDIKIQFGKNSFDGIKKLPW--KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNL 76 (134)
Q Consensus 2 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l 76 (134)
++..++ .+++|+.|+|++|.++.+|..+. .+|++|++++|.++.+ |.. +++|++|++++|.++ .
T Consensus 239 l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~-~-------- 307 (727)
T 4b8c_D 239 ISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSL-PAELGSCFQLKYFYFFDNMVT-T-------- 307 (727)
T ss_dssp CCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSC-CSSGGGGTTCSEEECCSSCCC-C--------
T ss_pred CChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCcc-ChhhcCCCCCCEEECCCCCCC-c--------
Confidence 344444 78999999999999999998763 9999999999999954 554 899999999999987 3
Q ss_pred CCccccccCCccCcCCCCCcEEEccCCccccCccccccCCCC-CcEEEcCCCcccccCC
Q 045549 77 STIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCEN-LQVVDLGNNKIEDILH 134 (134)
Q Consensus 77 ~~L~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~-L~~L~l~~n~l~~~~~ 134 (134)
+|..++.+++|+.|++++|.+++.+|..+..+.. ...+++++|.++|.+|
T Consensus 308 --------lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 308 --------LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp --------CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred --------cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 3555777888999999999998777766544321 1224445555554443
No 115
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.44 E-value=1.7e-12 Score=83.44 Aligned_cols=98 Identities=19% Similarity=0.224 Sum_probs=82.9
Q ss_pred CcEEEccCcccCCcCCCCCCCccEEEcccCccccccCccccCCCCccc--------cccCCccCcCCCCCcEEEccCCcc
Q 045549 34 LEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEI--------PWPIPETLSKGSNLRTLNFNGNEL 105 (134)
Q Consensus 34 L~~L~l~~n~l~~~~~~~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--------~~~~~~~~~~~~~L~~l~l~~n~l 105 (134)
-+.+++++|.++.+.......+++|++++|.++ .+|..+..+.+|+. ....+..|..+++|+.|++++|.+
T Consensus 12 ~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 468899999988754444778999999999999 78888888888877 233345788999999999999999
Q ss_pred ccCccccccCCCCCcEEEcCCCccccc
Q 045549 106 VGSVPRSLLNCENLQVVDLGNNKIEDI 132 (134)
Q Consensus 106 ~~~~p~~~~~l~~L~~L~l~~n~l~~~ 132 (134)
++..|..|.++++|+.|++++|.+++.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~ 117 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVV 117 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCee
Confidence 977677899999999999999999865
No 116
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.43 E-value=2.9e-12 Score=95.28 Aligned_cols=54 Identities=17% Similarity=0.128 Sum_probs=30.7
Q ss_pred CcccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCCCCCccEEEcccCccc
Q 045549 11 CRDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFT 66 (134)
Q Consensus 11 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~l~~n~l~ 66 (134)
++|+.|++++|.++.+|. ..++|++|++++|.++++. ..+++|++|++++|.++
T Consensus 61 ~~L~~L~L~~N~l~~lp~-~l~~L~~L~Ls~N~l~~lp-~~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA-LPPELRTLEVSGNQLTSLP-VLPPGLLELSIFSNPLT 114 (622)
T ss_dssp TTCSEEEECSCCCSCCCC-CCTTCCEEEECSCCCSCCC-CCCTTCCEEEECSCCCC
T ss_pred CCCcEEEecCCCCCCCCC-cCCCCCEEEcCCCcCCcCC-CCCCCCCEEECcCCcCC
Confidence 456666666666665555 3355666666666655432 24555666666655555
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.42 E-value=6.1e-13 Score=83.42 Aligned_cols=100 Identities=19% Similarity=0.157 Sum_probs=82.4
Q ss_pred ccCCcEEEccCcccC-CcCCCC---CCCccEEEcccCccccccCccccCCCCccc--------cccCCccCcCCCCCcEE
Q 045549 31 WKNLEYLDFRSNLLQ-GLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI--------PWPIPETLSKGSNLRTL 98 (134)
Q Consensus 31 ~~~L~~L~l~~n~l~-~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--------~~~~~~~~~~~~~L~~l 98 (134)
.++++.|++++|.++ +.+|.. ++.|++|++++|.+++. ..+..+++|+. ...+|..++.+++|+.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 378999999999998 444544 88999999999999855 77788888777 22366666679999999
Q ss_pred EccCCccccCcc--ccccCCCCCcEEEcCCCcccccC
Q 045549 99 NFNGNELVGSVP--RSLLNCENLQVVDLGNNKIEDIL 133 (134)
Q Consensus 99 ~l~~n~l~~~~p--~~~~~l~~L~~L~l~~n~l~~~~ 133 (134)
++++|.+++ +| ..+..+++|+.|++++|.+++..
T Consensus 101 ~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~ 136 (168)
T 2ell_A 101 NLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTNLN 136 (168)
T ss_dssp ECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGTST
T ss_pred eccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcchH
Confidence 999999994 44 68999999999999999998753
No 118
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.41 E-value=1.6e-12 Score=90.07 Aligned_cols=100 Identities=19% Similarity=0.203 Sum_probs=80.6
Q ss_pred cEEEcCCC-ccCCCCcccc--cCCcEEEccC-cccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccccccCC
Q 045549 14 IKIQFGKN-SFDGIKKLPW--KNLEYLDFRS-NLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIP 86 (134)
Q Consensus 14 ~~L~l~~n-~l~~~~~~~~--~~L~~L~l~~-n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~ 86 (134)
..++++++ .++.+|. +. .+|+.|++++ |.+++..+.. +++|++|+|++|++++.. |
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~----------------~ 73 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA----------------P 73 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC----------------T
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC----------------H
Confidence 45789888 8988998 54 6799999996 9999876543 899999999999999432 4
Q ss_pred ccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549 87 ETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 87 ~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
..|+.+++|+.|+|++|++++..+..+..++ |+.|++++|.+..
T Consensus 74 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 74 DAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp TGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred HHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 5667789999999999999954344455555 9999999999864
No 119
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.40 E-value=9.1e-13 Score=91.62 Aligned_cols=40 Identities=23% Similarity=0.507 Sum_probs=25.8
Q ss_pred CCCCcEEEccC-CccccCccc-cccCCCCCcEEEcCCCccccc
Q 045549 92 GSNLRTLNFNG-NELVGSVPR-SLLNCENLQVVDLGNNKIEDI 132 (134)
Q Consensus 92 ~~~L~~l~l~~-n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~ 132 (134)
..+++.+++.+ |.++ .+|. .|.++++|+.|++++|+|+..
T Consensus 176 ~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~l 217 (350)
T 4ay9_X 176 GTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSL 217 (350)
T ss_dssp TEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCC
T ss_pred ccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCcc
Confidence 34455555543 4444 4443 567788889999999888753
No 120
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.37 E-value=8.6e-12 Score=78.80 Aligned_cols=101 Identities=14% Similarity=0.131 Sum_probs=81.5
Q ss_pred CCcEEEccCcccCCcCCCCCCCccEEEcccCccccccCccccCCCCccc-------cccCC-ccCcCCCCCcEEEccCCc
Q 045549 33 NLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEI-------PWPIP-ETLSKGSNLRTLNFNGNE 104 (134)
Q Consensus 33 ~L~~L~l~~n~l~~~~~~~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-------~~~~~-~~~~~~~~L~~l~l~~n~ 104 (134)
+.+.++++++.++.......+++++|++++|++++..+..+..+.+|+. ...++ ..++.+++|+.|++++|.
T Consensus 8 ~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp ETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 4578899999988765444789999999999999666667787877777 22334 456889999999999999
Q ss_pred cccCccccccCCCCCcEEEcCCCcccccC
Q 045549 105 LVGSVPRSLLNCENLQVVDLGNNKIEDIL 133 (134)
Q Consensus 105 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 133 (134)
+++..+..+..+++|+.|++++|.+++..
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 116 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVP 116 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeC
Confidence 99665667899999999999999998653
No 121
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.37 E-value=4.9e-15 Score=95.49 Aligned_cols=58 Identities=17% Similarity=0.264 Sum_probs=38.5
Q ss_pred cccCCcccEEEcCCCccCCCCccc--ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccc
Q 045549 7 TQEVCRDIKIQFGKNSFDGIKKLP--WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFT 66 (134)
Q Consensus 7 ~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~ 66 (134)
+..+++|+.|++++|.++++| .+ +++|++|++++|.++.. |.. +++|++|++++|+++
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~N~l~ 106 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIA 106 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSC-SSHHHHHHHCSEEEEEEEECC
T ss_pred HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccc-cchhhcCCcCCEEECcCCcCC
Confidence 345667777777777777666 33 27777777777777643 322 466777777777776
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.35 E-value=4.7e-12 Score=93.30 Aligned_cols=102 Identities=17% Similarity=0.176 Sum_probs=83.8
Q ss_pred cccCCcccEEEcCCCccCCCCcccc--cCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCcccc
Q 045549 7 TQEVCRDIKIQFGKNSFDGIKKLPW--KNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEIP 82 (134)
Q Consensus 7 ~~~~~~L~~L~l~~n~l~~~~~~~~--~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~ 82 (134)
+..+++|+.|++++|.++.+|..+. ++|+.|++++|.++++ |.. +++|++|++++|++++..
T Consensus 459 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l-p~l~~l~~L~~L~Ls~N~l~~~~------------- 524 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNNRLQQSA------------- 524 (567)
T ss_dssp GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGTTCSSCCEEECCSSCCCSSS-------------
T ss_pred ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCC-cccCCCCCCcEEECCCCCCCCCC-------------
Confidence 5678899999999999999998764 9999999999999985 433 899999999999998432
Q ss_pred ccCCccCcCCCCCcEEEccCCccccCccc---cccCCCCCcEEEc
Q 045549 83 WPIPETLSKGSNLRTLNFNGNELVGSVPR---SLLNCENLQVVDL 124 (134)
Q Consensus 83 ~~~~~~~~~~~~L~~l~l~~n~l~~~~p~---~~~~l~~L~~L~l 124 (134)
.|..++.+++|+.|++++|.+++..|. .+..+++|+.|++
T Consensus 525 --~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 525 --AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp --TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred --CcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 055677789999999999999965432 2345889999864
No 123
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.34 E-value=1.1e-11 Score=78.04 Aligned_cols=86 Identities=16% Similarity=0.227 Sum_probs=71.6
Q ss_pred cCCcEEEccCcccCCcCCCCCCCccEEEcccCccccccCccccCCCCccccccCCccCcCCCCCcEEEccCCccccCccc
Q 045549 32 KNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPR 111 (134)
Q Consensus 32 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~ 111 (134)
...+.+++++|.++.+.....+.+++|++++|++++. .|..++.+++|+.|++++|++++..+.
T Consensus 9 C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~----------------~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 72 (170)
T 3g39_A 9 CSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKL----------------EPGVFDRLTQLTRLDLDNNQLTVLPAG 72 (170)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCC----------------CTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred cCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCcc----------------ChhhhcCcccCCEEECCCCCcCccChh
Confidence 3467899999999885444478899999999999832 255677889999999999999965556
Q ss_pred cccCCCCCcEEEcCCCcccccC
Q 045549 112 SLLNCENLQVVDLGNNKIEDIL 133 (134)
Q Consensus 112 ~~~~l~~L~~L~l~~n~l~~~~ 133 (134)
.|.++++|+.|++++|+|++..
T Consensus 73 ~f~~l~~L~~L~L~~N~l~~~~ 94 (170)
T 3g39_A 73 VFDKLTQLTQLSLNDNQLKSIP 94 (170)
T ss_dssp TTTTCTTCCEEECCSSCCCCCC
T ss_pred hccCCCCCCEEECCCCccCEeC
Confidence 6899999999999999998754
No 124
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.33 E-value=7.3e-12 Score=87.07 Aligned_cols=93 Identities=17% Similarity=0.115 Sum_probs=45.8
Q ss_pred cEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccC-ccccCCCCccc--------
Q 045549 14 IKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIP-CLICNLSTIEI-------- 81 (134)
Q Consensus 14 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~-~~~~~l~~L~~-------- 81 (134)
+.++.+++.++.+|..+..+++.|++++|+++.+.+.. +++|++|++++|.+.+.+| ..|..+.++..
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 34555555555555555555555555555555443322 5555555555555543333 23444444332
Q ss_pred -cccCCccCcCCCCCcEEEccCCccc
Q 045549 82 -PWPIPETLSKGSNLRTLNFNGNELV 106 (134)
Q Consensus 82 -~~~~~~~~~~~~~L~~l~l~~n~l~ 106 (134)
....|..+..+++|+.+++++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~ 117 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIK 117 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCS
T ss_pred ccccCchhhhhccccccccccccccc
Confidence 1112344555555555555555554
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.31 E-value=7.3e-12 Score=79.15 Aligned_cols=96 Identities=17% Similarity=0.119 Sum_probs=79.2
Q ss_pred cCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc-------cccCCcc-CcCCCCCcEEEc
Q 045549 32 KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI-------PWPIPET-LSKGSNLRTLNF 100 (134)
Q Consensus 32 ~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-------~~~~~~~-~~~~~~L~~l~l 100 (134)
.+++.|++++|.++.. +.. .++|++|++++|.+++. ..+..+++|+. ...+|.. ++.+++|+.|++
T Consensus 19 ~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp TSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 7899999999999875 433 45999999999999954 67777777777 2334544 478999999999
Q ss_pred cCCccccCccc--cccCCCCCcEEEcCCCcccc
Q 045549 101 NGNELVGSVPR--SLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 101 ~~n~l~~~~p~--~~~~l~~L~~L~l~~n~l~~ 131 (134)
++|.+. .+|. .+..+++|+.|++++|.++.
T Consensus 96 ~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~ 127 (176)
T 1a9n_A 96 TNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN 127 (176)
T ss_dssp CSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred CCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC
Confidence 999997 6776 78999999999999999875
No 126
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.30 E-value=1.8e-13 Score=96.14 Aligned_cols=44 Identities=18% Similarity=0.310 Sum_probs=26.2
Q ss_pred cCcCCCCCcEEEccCCccc----cCccccccCCCCCcEEEcCCCcccc
Q 045549 88 TLSKGSNLRTLNFNGNELV----GSVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 88 ~~~~~~~L~~l~l~~n~l~----~~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
.+..+++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence 4555666666666666663 3455556666666666666666554
No 127
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.30 E-value=2.5e-11 Score=76.73 Aligned_cols=85 Identities=20% Similarity=0.285 Sum_probs=70.1
Q ss_pred CCcEEEccCcccCCcCCCCCCCccEEEcccCccccccCccccCCCCccccccCCccCcCCCCCcEEEccCCccccCcccc
Q 045549 33 NLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRS 112 (134)
Q Consensus 33 ~L~~L~l~~n~l~~~~~~~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~ 112 (134)
.-+.+++++|.++.+.....+.+++|++++|++++. .|..++.+++|+.|++++|++++..+..
T Consensus 13 ~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~----------------~~~~~~~l~~L~~L~Ls~N~l~~i~~~~ 76 (174)
T 2r9u_A 13 DQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKL----------------EPGVFDHLVNLQQLYFNSNKLTAIPTGV 76 (174)
T ss_dssp CSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCC----------------CTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCcccc----------------CHHHhcCCcCCCEEECCCCCCCccChhH
Confidence 457899999999765444478899999999999832 2556788899999999999999554456
Q ss_pred ccCCCCCcEEEcCCCcccccC
Q 045549 113 LLNCENLQVVDLGNNKIEDIL 133 (134)
Q Consensus 113 ~~~l~~L~~L~l~~n~l~~~~ 133 (134)
|.++++|+.|++++|+|++..
T Consensus 77 ~~~l~~L~~L~L~~N~l~~l~ 97 (174)
T 2r9u_A 77 FDKLTQLTQLDLNDNHLKSIP 97 (174)
T ss_dssp TTTCTTCCEEECCSSCCCCCC
T ss_pred hCCcchhhEEECCCCccceeC
Confidence 799999999999999998753
No 128
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.25 E-value=3.3e-13 Score=92.93 Aligned_cols=119 Identities=17% Similarity=0.293 Sum_probs=52.3
Q ss_pred CCcccEEEcCCCccCC--CCccc--ccCCcEEEccCcccCCcCCCC---CCCccEEEcccC-cccc-ccCccccCCCCcc
Q 045549 10 VCRDIKIQFGKNSFDG--IKKLP--WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNN-RFTR-EIPCLICNLSTIE 80 (134)
Q Consensus 10 ~~~L~~L~l~~n~l~~--~~~~~--~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n-~l~~-~~~~~~~~l~~L~ 80 (134)
+++|+.|++++|.+++ ++..+ +++|++|++++|.+++..+.. +++|++|++++| .+++ .++..+..+++|+
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 3444555555544432 22221 245555555555444322211 445555555555 3432 1333333344333
Q ss_pred c---c-c-c-----CCccCcCCC-CCcEEEccCC--ccc-cCccccccCCCCCcEEEcCCCc
Q 045549 81 I---P-W-P-----IPETLSKGS-NLRTLNFNGN--ELV-GSVPRSLLNCENLQVVDLGNNK 128 (134)
Q Consensus 81 ~---~-~-~-----~~~~~~~~~-~L~~l~l~~n--~l~-~~~p~~~~~l~~L~~L~l~~n~ 128 (134)
. . . . ++..+..++ +|+.|++++| .++ +.++..+.++++|+.|++++|.
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence 3 0 0 1 222234445 5555555555 232 2334445555666666666655
No 129
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.25 E-value=7e-13 Score=91.27 Aligned_cols=121 Identities=15% Similarity=0.161 Sum_probs=68.5
Q ss_pred cccCCcccEEEcCCCccCC-CCccc--ccCCcEEEccCc-ccCCc-CCCC---CCCccEEEcccC-ccccc-cCccccCC
Q 045549 7 TQEVCRDIKIQFGKNSFDG-IKKLP--WKNLEYLDFRSN-LLQGL-FLDP---SSNMKVFLISNN-RFTRE-IPCLICNL 76 (134)
Q Consensus 7 ~~~~~~L~~L~l~~n~l~~-~~~~~--~~~L~~L~l~~n-~l~~~-~~~~---l~~l~~L~l~~n-~l~~~-~~~~~~~l 76 (134)
+..+++|+.|++++|.+++ .+..+ +++|++|++++| .+++. .+.. +++|++|++++| .+++. ++..+..+
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 193 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence 3456777777777777664 33332 367777777777 45431 2221 666777777777 66532 34444444
Q ss_pred C-Cccc-----c------ccCCccCcCCCCCcEEEccCCc-cccCccccccCCCCCcEEEcCCC
Q 045549 77 S-TIEI-----P------WPIPETLSKGSNLRTLNFNGNE-LVGSVPRSLLNCENLQVVDLGNN 127 (134)
Q Consensus 77 ~-~L~~-----~------~~~~~~~~~~~~L~~l~l~~n~-l~~~~p~~~~~l~~L~~L~l~~n 127 (134)
+ +|+. . ..++..+..+++|+.|++++|. +++..+..+..+++|+.|++++|
T Consensus 194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 4 4444 1 1223344456666666666666 44444555666666666666666
No 130
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.24 E-value=7e-13 Score=93.14 Aligned_cols=122 Identities=17% Similarity=0.252 Sum_probs=83.2
Q ss_pred CcccEEEcCCCccCC--CCc---cc--ccCCcEEEccCcccCC-----cCC-CC--CCCccEEEcccCccc----cccCc
Q 045549 11 CRDIKIQFGKNSFDG--IKK---LP--WKNLEYLDFRSNLLQG-----LFL-DP--SSNMKVFLISNNRFT----REIPC 71 (134)
Q Consensus 11 ~~L~~L~l~~n~l~~--~~~---~~--~~~L~~L~l~~n~l~~-----~~~-~~--l~~l~~L~l~~n~l~----~~~~~ 71 (134)
++|+.|++++|.++. ++. .+ .++|+.|++++|.++. ..+ .. +++|++|++++|.++ ..+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 677777777777762 442 11 2678888888887762 222 22 778888888888875 46666
Q ss_pred cccCCCCccc----c--------ccCCccC--cCCCCCcEEEccCCcccc----Cccccc-cCCCCCcEEEcCCCccccc
Q 045549 72 LICNLSTIEI----P--------WPIPETL--SKGSNLRTLNFNGNELVG----SVPRSL-LNCENLQVVDLGNNKIEDI 132 (134)
Q Consensus 72 ~~~~l~~L~~----~--------~~~~~~~--~~~~~L~~l~l~~n~l~~----~~p~~~-~~l~~L~~L~l~~n~l~~~ 132 (134)
.+..+++|+. . ..++..+ +.+++|+.|++++|.+.+ .+|..+ .++++|+.|++++|.+++.
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 7776666666 1 1134444 337888888888888885 367666 6678888888888888764
No 131
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.22 E-value=1.6e-12 Score=90.76 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=7.0
Q ss_pred CCccEEEcccCccc
Q 045549 53 SNMKVFLISNNRFT 66 (134)
Q Consensus 53 ~~l~~L~l~~n~l~ 66 (134)
++|++|++++|.++
T Consensus 109 ~~L~~L~Ls~N~l~ 122 (362)
T 3goz_A 109 FTITVLDLGWNDFS 122 (362)
T ss_dssp TTCCEEECCSSCGG
T ss_pred CCccEEECcCCcCC
Confidence 34555555555544
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.20 E-value=2.1e-12 Score=90.13 Aligned_cols=124 Identities=17% Similarity=0.172 Sum_probs=78.5
Q ss_pred ccCCcccEEEcCCCccCCCCc----cc---cc-CCcEEEccCcccCCcCCCC---C-----CCccEEEcccCccccccCc
Q 045549 8 QEVCRDIKIQFGKNSFDGIKK----LP---WK-NLEYLDFRSNLLQGLFLDP---S-----SNMKVFLISNNRFTREIPC 71 (134)
Q Consensus 8 ~~~~~L~~L~l~~n~l~~~~~----~~---~~-~L~~L~l~~n~l~~~~~~~---l-----~~l~~L~l~~n~l~~~~~~ 71 (134)
...++|+.|++++|.+++.+. .. .+ +++.|++++|.+++..+.. + ++|++|++++|.+++..+.
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 344569999999999988664 22 25 8999999999998765433 2 8899999999999866555
Q ss_pred cccC----C-CCccc-------cccC-C----ccCcC-CCCCcEEEccCCccccC----ccccccCCC-CCcEEEcCCCc
Q 045549 72 LICN----L-STIEI-------PWPI-P----ETLSK-GSNLRTLNFNGNELVGS----VPRSLLNCE-NLQVVDLGNNK 128 (134)
Q Consensus 72 ~~~~----l-~~L~~-------~~~~-~----~~~~~-~~~L~~l~l~~n~l~~~----~p~~~~~l~-~L~~L~l~~n~ 128 (134)
.+.. + ++|+. .... + ..+.. ..+|+.|++++|.+.+. ++..+..++ +|+.|++++|.
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence 4332 2 44444 1111 1 11222 24677777777766632 223334444 66666666666
Q ss_pred ccc
Q 045549 129 IED 131 (134)
Q Consensus 129 l~~ 131 (134)
+++
T Consensus 179 l~~ 181 (362)
T 3goz_A 179 LAS 181 (362)
T ss_dssp GGG
T ss_pred Cch
Confidence 654
No 133
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.14 E-value=1.7e-10 Score=79.89 Aligned_cols=82 Identities=20% Similarity=0.227 Sum_probs=68.4
Q ss_pred cEEEccCc-ccCCcCCCC--CCCccEEEccc-CccccccCccccCCCCccccccCCccCcCCCCCcEEEccCCccccCcc
Q 045549 35 EYLDFRSN-LLQGLFLDP--SSNMKVFLISN-NRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVP 110 (134)
Q Consensus 35 ~~L~l~~n-~l~~~~~~~--l~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p 110 (134)
..++.+++ .++.+.. . +++|++|+|++ |.+++ ++ +..|+.+++|+.|+|++|++++..|
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~-~~---------------~~~~~~l~~L~~L~l~~N~l~~~~~ 73 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQH-LE---------------LRDLRGLGELRNLTIVKSGLRFVAP 73 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCE-EC---------------GGGSCSCCCCSEEECCSSCCCEECT
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCC-cC---------------hhHhccccCCCEEECCCCccceeCH
Confidence 45688887 8887554 4 77899999996 99983 33 4567889999999999999998778
Q ss_pred ccccCCCCCcEEEcCCCcccccC
Q 045549 111 RSLLNCENLQVVDLGNNKIEDIL 133 (134)
Q Consensus 111 ~~~~~l~~L~~L~l~~n~l~~~~ 133 (134)
..|.++++|+.|++++|+|++..
T Consensus 74 ~~~~~l~~L~~L~l~~N~l~~~~ 96 (347)
T 2ifg_A 74 DAFHFTPRLSRLNLSFNALESLS 96 (347)
T ss_dssp TGGGSCSCCCEEECCSSCCSCCC
T ss_pred HHhcCCcCCCEEeCCCCccceeC
Confidence 88999999999999999998753
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.14 E-value=1.6e-12 Score=92.80 Aligned_cols=122 Identities=18% Similarity=0.200 Sum_probs=67.8
Q ss_pred CCcccEEEcCCCccCC-----CCccc--ccCCcEEEccCcccCCcCCCC--------CCCccEEEcccCccccc----cC
Q 045549 10 VCRDIKIQFGKNSFDG-----IKKLP--WKNLEYLDFRSNLLQGLFLDP--------SSNMKVFLISNNRFTRE----IP 70 (134)
Q Consensus 10 ~~~L~~L~l~~n~l~~-----~~~~~--~~~L~~L~l~~n~l~~~~~~~--------l~~l~~L~l~~n~l~~~----~~ 70 (134)
+++|+.|++++|.++. ++..+ .++++.|++++|.++...+.. .+.|++|++++|.+++. ++
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 334 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS 334 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence 4555555555555543 22222 255666666666554321111 24666666666666533 33
Q ss_pred ccccCCCCccc----cc--------cCCccCcC-CCCCcEEEccCCcccc----CccccccCCCCCcEEEcCCCcccc
Q 045549 71 CLICNLSTIEI----PW--------PIPETLSK-GSNLRTLNFNGNELVG----SVPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 71 ~~~~~l~~L~~----~~--------~~~~~~~~-~~~L~~l~l~~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
..+..+++|+. .. .+...+.. .++|+.|++++|.+++ .+|..+..+++|+.|++++|.+++
T Consensus 335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 34444444444 00 11111211 5678888888888875 567777778888888888888765
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.10 E-value=6.1e-13 Score=85.62 Aligned_cols=108 Identities=22% Similarity=0.230 Sum_probs=86.1
Q ss_pred ccccCCcccEEEcCCCccCCCCcccc--cCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCccc
Q 045549 6 VTQEVCRDIKIQFGKNSFDGIKKLPW--KNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEI 81 (134)
Q Consensus 6 ~~~~~~~L~~L~l~~n~l~~~~~~~~--~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~ 81 (134)
.+..+++|+.|++++|.++.+|.... +++++|++++|++++.. .. +++|++|++++|.+++ ++.
T Consensus 65 ~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~-~~~---------- 132 (198)
T 1ds9_A 65 SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITN-WGE---------- 132 (198)
T ss_dssp CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCC-HHH----------
T ss_pred ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCc-hhH----------
Confidence 34567899999999999998887653 89999999999998853 33 7899999999999883 221
Q ss_pred cccCCccCcCCCCCcEEEccCCccccCccc----------cccCCCCCcEEEcCCCcccc
Q 045549 82 PWPIPETLSKGSNLRTLNFNGNELVGSVPR----------SLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 82 ~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~----------~~~~l~~L~~L~l~~n~l~~ 131 (134)
...+..+++|+.+++++|.+.+..|. .+..+++|+.|| +|.++.
T Consensus 133 ----~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 133 ----IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp ----HHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred ----HHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 12466789999999999999866554 378899999987 676654
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.02 E-value=2.2e-09 Score=73.90 Aligned_cols=78 Identities=19% Similarity=0.183 Sum_probs=49.6
Q ss_pred CCccEEEcccCccccccCccccCCCCccc------cccC-CccCcCCCCCc-EEEccCCccccCccccccCCCCCcEEEc
Q 045549 53 SNMKVFLISNNRFTREIPCLICNLSTIEI------PWPI-PETLSKGSNLR-TLNFNGNELVGSVPRSLLNCENLQVVDL 124 (134)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~------~~~~-~~~~~~~~~L~-~l~l~~n~l~~~~p~~~~~l~~L~~L~l 124 (134)
++|+.+++++|.++..-+..|..+.+|+. ...+ +..|..+.+|+ .+.+.+ .++..-+.+|.++++|+.+++
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEe
Confidence 46777777777777555556666666665 1122 34566777777 777776 555333456777777777777
Q ss_pred CCCcccc
Q 045549 125 GNNKIED 131 (134)
Q Consensus 125 ~~n~l~~ 131 (134)
.+|.++.
T Consensus 305 ~~n~i~~ 311 (329)
T 3sb4_A 305 TGDKITT 311 (329)
T ss_dssp CSSCCCE
T ss_pred CCCccCc
Confidence 7766643
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.02 E-value=1.2e-09 Score=75.16 Aligned_cols=92 Identities=13% Similarity=0.017 Sum_probs=71.3
Q ss_pred cCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCcc-c------cccC-CccCcCCCCCcEEEc
Q 045549 32 KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIE-I------PWPI-PETLSKGSNLRTLNF 100 (134)
Q Consensus 32 ~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~-~------~~~~-~~~~~~~~~L~~l~l 100 (134)
.+|+.+++++|.++.+.... +.+|+.+++..| +...-+.+|..+.+|+ . ...+ +..|..|++|+.+++
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEEEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCEEEe
Confidence 47888888888877654443 788999999988 7756777888888887 4 2223 467889999999999
Q ss_pred cCCccccCccccccCCCCCcEEEc
Q 045549 101 NGNELVGSVPRSLLNCENLQVVDL 124 (134)
Q Consensus 101 ~~n~l~~~~p~~~~~l~~L~~L~l 124 (134)
..|.++..-+.+|.++++|+.++.
T Consensus 305 ~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 305 TGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCCccCccchhhhcCCcchhhhcc
Confidence 999888444558999999998864
No 138
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.98 E-value=2.1e-11 Score=87.02 Aligned_cols=74 Identities=15% Similarity=0.134 Sum_probs=33.9
Q ss_pred ccCCcccEEEcCCCccCC-----CCccc--ccCCcEEEccCcccCCcCCC----CCC----CccEEEcccCcccc----c
Q 045549 8 QEVCRDIKIQFGKNSFDG-----IKKLP--WKNLEYLDFRSNLLQGLFLD----PSS----NMKVFLISNNRFTR----E 68 (134)
Q Consensus 8 ~~~~~L~~L~l~~n~l~~-----~~~~~--~~~L~~L~l~~n~l~~~~~~----~l~----~l~~L~l~~n~l~~----~ 68 (134)
..+++|+.|++++|.++. ++..+ .+++++|++++|.++...+. .+. +|++|++++|.++. .
T Consensus 25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 104 (461)
T 1z7x_W 25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104 (461)
T ss_dssp HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence 345555666666555542 11111 15555555555554432111 022 45555555555542 3
Q ss_pred cCccccCCCCccc
Q 045549 69 IPCLICNLSTIEI 81 (134)
Q Consensus 69 ~~~~~~~l~~L~~ 81 (134)
++..+..+++|+.
T Consensus 105 l~~~l~~~~~L~~ 117 (461)
T 1z7x_W 105 LSSTLRTLPTLQE 117 (461)
T ss_dssp HHHHTTSCTTCCE
T ss_pred HHHHHccCCceeE
Confidence 3444444444444
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.95 E-value=3.6e-11 Score=84.46 Aligned_cols=121 Identities=15% Similarity=0.159 Sum_probs=73.8
Q ss_pred CcccEEEcCCCccCC--CCccc--ccCCcEEEccCcccCCcCCC--------CCCCccEEEcccCccccc----cCcccc
Q 045549 11 CRDIKIQFGKNSFDG--IKKLP--WKNLEYLDFRSNLLQGLFLD--------PSSNMKVFLISNNRFTRE----IPCLIC 74 (134)
Q Consensus 11 ~~L~~L~l~~n~l~~--~~~~~--~~~L~~L~l~~n~l~~~~~~--------~l~~l~~L~l~~n~l~~~----~~~~~~ 74 (134)
++|+.|++++|.++. +.... ..+++.|++++|.++..... ..+.|++|++++|.++.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 577777887777754 11111 26777888888876542111 135688888888877632 223334
Q ss_pred CCCCccc------------cccCCccCcCCCCCcEEEccCCccccC----ccccccCCCCCcEEEcCCCcccc
Q 045549 75 NLSTIEI------------PWPIPETLSKGSNLRTLNFNGNELVGS----VPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 75 ~l~~L~~------------~~~~~~~~~~~~~L~~l~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
..++|+. ...+...+...++|+.|++++|.+... +...+...++|+.|++++|.|++
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 4444444 112334455667888888888888642 23345566788888888888764
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.86 E-value=3.5e-09 Score=77.77 Aligned_cols=121 Identities=12% Similarity=0.045 Sum_probs=70.4
Q ss_pred ccCCcccEEEcCCCccCCCCcc----c---ccCCcEEEccCcccCCcCCCC-------CCCccEEEcccCccccccCccc
Q 045549 8 QEVCRDIKIQFGKNSFDGIKKL----P---WKNLEYLDFRSNLLQGLFLDP-------SSNMKVFLISNNRFTREIPCLI 73 (134)
Q Consensus 8 ~~~~~L~~L~l~~n~l~~~~~~----~---~~~L~~L~l~~n~l~~~~~~~-------l~~l~~L~l~~n~l~~~~~~~~ 73 (134)
..+++|+.|++++|.+++.... . +++|+.|++++|.+++..... +++|++|++++|.+. .++..+
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~ 239 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFF 239 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHH
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHH
Confidence 3678888888888887653221 1 378888888888876332211 678888888888877 355555
Q ss_pred cCCCCccc---c--------ccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccc
Q 045549 74 CNLSTIEI---P--------WPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIE 130 (134)
Q Consensus 74 ~~l~~L~~---~--------~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 130 (134)
..+++|+. . ......+..+++|+.+++.++... .+|..+..+++|+.|++++|.++
T Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~ 306 (592)
T 3ogk_B 240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLE 306 (592)
T ss_dssp HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCC
T ss_pred hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCC
Confidence 55555544 0 112233444455555555443222 34444555555555555555543
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.78 E-value=1.9e-10 Score=80.75 Aligned_cols=122 Identities=14% Similarity=0.072 Sum_probs=85.4
Q ss_pred CCcccEEEcCCCccCCCCcc-c-------ccCCcEEEccCcccCCcCCCC----CCCccEEEcccCccccccCcccc---
Q 045549 10 VCRDIKIQFGKNSFDGIKKL-P-------WKNLEYLDFRSNLLQGLFLDP----SSNMKVFLISNNRFTREIPCLIC--- 74 (134)
Q Consensus 10 ~~~L~~L~l~~n~l~~~~~~-~-------~~~L~~L~l~~n~l~~~~~~~----l~~l~~L~l~~n~l~~~~~~~~~--- 74 (134)
.+.++.|++++|.++..... + ..+++.|++++|.++...... +.++++|++++|.++......++
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46799999999999762221 1 158999999999986532211 67899999999999754433332
Q ss_pred --CCCCccc------------cccCCccCcCCCCCcEEEccCCccccC----ccccccCCCCCcEEEcCCCcccc
Q 045549 75 --NLSTIEI------------PWPIPETLSKGSNLRTLNFNGNELVGS----VPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 75 --~l~~L~~------------~~~~~~~~~~~~~L~~l~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
....|+. ...++..+..+++|+.|++++|.+... ++..+...++|+.|++++|.|++
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 1233333 112344456778899999999998742 24567778899999999999875
No 142
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.72 E-value=7.5e-10 Score=70.60 Aligned_cols=113 Identities=9% Similarity=0.013 Sum_probs=81.4
Q ss_pred cccCCcccEEEcCCC-ccCC--CC---ccc--ccCCcEEEccCcccCCcCCC----C---CCCccEEEcccCccccccCc
Q 045549 7 TQEVCRDIKIQFGKN-SFDG--IK---KLP--WKNLEYLDFRSNLLQGLFLD----P---SSNMKVFLISNNRFTREIPC 71 (134)
Q Consensus 7 ~~~~~~L~~L~l~~n-~l~~--~~---~~~--~~~L~~L~l~~n~l~~~~~~----~---l~~l~~L~l~~n~l~~~~~~ 71 (134)
....+.|+.|++++| .+.. +. ..+ ..+++.|++++|.+...... . .++|++|++++|.++..-..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 456789999999999 8864 21 111 27899999999998743111 1 57899999999998743222
Q ss_pred cccCCCCccccccCCccCcCCCCCcEEEc--cCCccccC----ccccccCCCCCcEEEcCCCcccc
Q 045549 72 LICNLSTIEIPWPIPETLSKGSNLRTLNF--NGNELVGS----VPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 72 ~~~~l~~L~~~~~~~~~~~~~~~L~~l~l--~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
. +...+...+.|+.|++ ++|.+... +...+...++|+.|++++|.+..
T Consensus 112 ~------------l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 112 A------------LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp H------------HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred H------------HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 2 2335566788999999 88998743 33456667899999999998853
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.58 E-value=3.3e-08 Score=72.57 Aligned_cols=120 Identities=15% Similarity=0.098 Sum_probs=72.1
Q ss_pred ccccCCcccEEEcCCCccCCCCc-----cc--ccCCcEEEccCcccCCcCCCC--CCCccEEEcccCccc---cccCccc
Q 045549 6 VTQEVCRDIKIQFGKNSFDGIKK-----LP--WKNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFT---REIPCLI 73 (134)
Q Consensus 6 ~~~~~~~L~~L~l~~n~l~~~~~-----~~--~~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~---~~~~~~~ 73 (134)
++..+++|+.|++++|.++++.. .+ +++|+.|++++|.+.+..... +++|++|+++..... +.....+
T Consensus 187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 45678999999999999975432 11 389999999999877632211 777888888753221 1222333
Q ss_pred cCCCCccc-------cccCCccCcCCCCCcEEEccCCccccCcc-ccccCCCCCcEEEcC
Q 045549 74 CNLSTIEI-------PWPIPETLSKGSNLRTLNFNGNELVGSVP-RSLLNCENLQVVDLG 125 (134)
Q Consensus 74 ~~l~~L~~-------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p-~~~~~l~~L~~L~l~ 125 (134)
..+++|+. ...+|..+..+++|+.|++++|.+.+... ..+.++++|+.|+++
T Consensus 267 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred hccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 44444433 22344455556677777777666543222 234556666666655
No 144
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.48 E-value=1.5e-07 Score=63.24 Aligned_cols=76 Identities=22% Similarity=0.228 Sum_probs=47.4
Q ss_pred cCCcEEEccCcccCCcC--CCC---CCCccEEEcccCccccccCccccCCCCccccccCCccCcCCCCCcEEEccCCccc
Q 045549 32 KNLEYLDFRSNLLQGLF--LDP---SSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELV 106 (134)
Q Consensus 32 ~~L~~L~l~~n~l~~~~--~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~L~~l~l~~n~l~ 106 (134)
++|+.|++++|+++++. +.. +++|++|+|++|.+++. ..+. .+..+ +|+.|++.+|.++
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~-------------~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELD-------------KIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGG-------------GGTTS-CCSEEECTTSTTG
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhh-------------hcccC-CcceEEccCCcCc
Confidence 67777777777777643 222 77777777777777632 1111 12223 6777788777777
Q ss_pred cCcc-------ccccCCCCCcEEE
Q 045549 107 GSVP-------RSLLNCENLQVVD 123 (134)
Q Consensus 107 ~~~p-------~~~~~l~~L~~L~ 123 (134)
+.+| ..+..+++|+.||
T Consensus 234 ~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 234 DTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGCSSHHHHHHHHHHHCTTCCEES
T ss_pred cccCcchhHHHHHHHHCcccCeEC
Confidence 5444 2356677777766
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.47 E-value=1.4e-06 Score=61.79 Aligned_cols=124 Identities=8% Similarity=0.087 Sum_probs=73.7
Q ss_pred cccccccCCcccEEEcCCCccCCCCcccc--cCCcEEEccCcccCCcCCCC---CCCccEEEcccCccc-----cccCcc
Q 045549 3 EEEVTQEVCRDIKIQFGKNSFDGIKKLPW--KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFT-----REIPCL 72 (134)
Q Consensus 3 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~-----~~~~~~ 72 (134)
+...|.++++|+.+.+..+ ++.++...+ .+++.+.+..+ ++.+.... +.+|+.+++.+|.+. ..-+..
T Consensus 218 ~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a 295 (401)
T 4fdw_A 218 GSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC 295 (401)
T ss_dssp CTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT
T ss_pred hhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHH
Confidence 4455666667777777653 444444433 55666666332 33322222 677888888776654 344566
Q ss_pred ccCCCCccc------cccC-CccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccc
Q 045549 73 ICNLSTIEI------PWPI-PETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIE 130 (134)
Q Consensus 73 ~~~l~~L~~------~~~~-~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 130 (134)
|..|.+|+. ...+ ...|..|.+|+.+.+..+ ++..-..+|.++ +|+.+++.+|.+.
T Consensus 296 F~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 296 LEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp TTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred hhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 666666665 1122 345677788888888655 442334567777 7888888777553
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.42 E-value=2.4e-06 Score=60.52 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=34.9
Q ss_pred ccccccccCCcccEEEcCCCccCCCCcccc--cCCcEEEccCcccCCcCCCC---CCCccEEEccc
Q 045549 2 LEEEVTQEVCRDIKIQFGKNSFDGIKKLPW--KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISN 62 (134)
Q Consensus 2 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~ 62 (134)
|+...|.++++|+.+++++|.++.++...+ .+++.+.+..+ ++.+.... +.+|+.+++..
T Consensus 171 I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 171 LKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp ECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred ehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 345567777888888888777776665543 56666666543 33222211 44555555554
No 147
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.32 E-value=8.8e-07 Score=59.54 Aligned_cols=66 Identities=30% Similarity=0.423 Sum_probs=46.0
Q ss_pred CCCccEEEcccCccccccCccccCCCCccccccCCccCcCCCCCcEEEccCCccccCccccccCCC--CCcEEEcCCCcc
Q 045549 52 SSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCE--NLQVVDLGNNKI 129 (134)
Q Consensus 52 l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~--~L~~L~l~~n~l 129 (134)
++.|+.|+|++|++++. + .++..+..+++|+.|+|++|.+.+. ..+..+. +|+.|++++|.+
T Consensus 169 l~~L~~L~Ls~N~l~~l-~-------------~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRL-D-------------DMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp CTTCCEEECTTSCCCCC-G-------------GGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTT
T ss_pred CCCCCEEECCCCCCCCC-c-------------cchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcC
Confidence 67888888888888732 1 1244455678888888888888843 2233333 788888888888
Q ss_pred cccC
Q 045549 130 EDIL 133 (134)
Q Consensus 130 ~~~~ 133 (134)
.+.+
T Consensus 233 ~~~~ 236 (267)
T 3rw6_A 233 CDTF 236 (267)
T ss_dssp GGGC
T ss_pred cccc
Confidence 7644
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.28 E-value=1.5e-07 Score=69.12 Aligned_cols=37 Identities=24% Similarity=0.188 Sum_probs=23.9
Q ss_pred CCCCCcEEEccCCccccCc-cccccCCCCCcEEEcCCC
Q 045549 91 KGSNLRTLNFNGNELVGSV-PRSLLNCENLQVVDLGNN 127 (134)
Q Consensus 91 ~~~~L~~l~l~~n~l~~~~-p~~~~~l~~L~~L~l~~n 127 (134)
.+++|+.|++++|.+.+.. ...+..+++|+.|++++|
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 4567777777777765322 223557777777777766
No 149
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.23 E-value=1.9e-07 Score=68.56 Aligned_cols=59 Identities=14% Similarity=0.093 Sum_probs=30.1
Q ss_pred cCCcccEEEcCCCccCC-CCccc---ccCCcEEEccCc-ccCCc-CCC---CCCCccEEEcccCcccc
Q 045549 9 EVCRDIKIQFGKNSFDG-IKKLP---WKNLEYLDFRSN-LLQGL-FLD---PSSNMKVFLISNNRFTR 67 (134)
Q Consensus 9 ~~~~L~~L~l~~n~l~~-~~~~~---~~~L~~L~l~~n-~l~~~-~~~---~l~~l~~L~l~~n~l~~ 67 (134)
.+++|+.|++++|.+++ .+..+ +++|+.|++++| .++.. .+. .+++|++|++++|.+++
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~ 170 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDD 170 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEEC
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCC
Confidence 45566666666665544 22211 256666666666 33221 111 15566666666666553
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.09 E-value=8.8e-07 Score=62.02 Aligned_cols=40 Identities=15% Similarity=0.279 Sum_probs=22.7
Q ss_pred CCCCcEEEccCCccccC----ccccccCCCCCcEEEcCCCcccc
Q 045549 92 GSNLRTLNFNGNELVGS----VPRSLLNCENLQVVDLGNNKIED 131 (134)
Q Consensus 92 ~~~L~~l~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~ 131 (134)
+++|+.|+++.|.+.+. ++..+.++++|+.|++++|.+++
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 45666666666666532 22233445666666666666653
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.07 E-value=3.9e-07 Score=57.91 Aligned_cols=88 Identities=19% Similarity=0.281 Sum_probs=64.8
Q ss_pred cCCcEEEccCc-ccCCcCCC-------CCCCccEEEcccCccccccCccccCCCCccccccCCccCcCCCCCcEEEccCC
Q 045549 32 KNLEYLDFRSN-LLQGLFLD-------PSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGN 103 (134)
Q Consensus 32 ~~L~~L~l~~n-~l~~~~~~-------~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~L~~l~l~~n 103 (134)
++++.|++++| .+...... ..++|++|++++|.+...-...+ ...+...+.|+.|++++|
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l------------~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFAL------------AEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHH------------HHHHHHCSSCCEEECCSS
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHH------------HHHHHhCCCcCEEECcCC
Confidence 78999999999 77642111 15789999999999873322221 233445678999999999
Q ss_pred ccccC----ccccccCCCCCcEEEc--CCCcccc
Q 045549 104 ELVGS----VPRSLLNCENLQVVDL--GNNKIED 131 (134)
Q Consensus 104 ~l~~~----~p~~~~~l~~L~~L~l--~~n~l~~ 131 (134)
.+... +...+...++|+.|++ ++|.+++
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence 99843 3556777889999999 8899875
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.04 E-value=5e-06 Score=58.23 Aligned_cols=123 Identities=15% Similarity=0.144 Sum_probs=74.2
Q ss_pred cCCcccEEEcCCCccCC----------CCccc--ccCCcEEEccCcccCCcCCCCCCCccEEEcccCccccccCcccc--
Q 045549 9 EVCRDIKIQFGKNSFDG----------IKKLP--WKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLIC-- 74 (134)
Q Consensus 9 ~~~~L~~L~l~~n~l~~----------~~~~~--~~~L~~L~l~~n~l~~~~~~~l~~l~~L~l~~n~l~~~~~~~~~-- 74 (134)
.+++|+.|.+.+..... +...+ +++|+.|.+++|.-....+..+++|+.|++..+.+.......++
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~ 216 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGS 216 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHHHHHHc
Confidence 46788888886653321 11111 27899999988731122221277888888888877533322332
Q ss_pred CCCCccc---c---c---------cCCccC--cCCCCCcEEEccCCccccCccccc---cCCCCCcEEEcCCCcccc
Q 045549 75 NLSTIEI---P---W---------PIPETL--SKGSNLRTLNFNGNELVGSVPRSL---LNCENLQVVDLGNNKIED 131 (134)
Q Consensus 75 ~l~~L~~---~---~---------~~~~~~--~~~~~L~~l~l~~n~l~~~~p~~~---~~l~~L~~L~l~~n~l~~ 131 (134)
.+++|+. . . .+...+ ..+++|+.|++.+|.+.+..+..+ ..+++|+.|+++.|.+++
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 3344433 0 0 011122 247899999999998874333333 357899999999999876
No 153
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.86 E-value=4.9e-05 Score=45.56 Aligned_cols=53 Identities=11% Similarity=0.093 Sum_probs=45.7
Q ss_pred cEEEcCCCccC--CCCcccccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccc
Q 045549 14 IKIQFGKNSFD--GIKKLPWKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFT 66 (134)
Q Consensus 14 ~~L~l~~n~l~--~~~~~~~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~ 66 (134)
..++.+++.++ .+|..+..+++.|++++|+++.+.+.. ++.|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47899999998 799888889999999999999876554 789999999999765
No 154
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.41 E-value=2.9e-05 Score=49.83 Aligned_cols=111 Identities=12% Similarity=0.137 Sum_probs=73.6
Q ss_pred ccCCcccEEEcCCC-ccCC--C---Ccccc--cCCcEEEccCcccCCcCCCC-------CCCccEEEcccCccccccCcc
Q 045549 8 QEVCRDIKIQFGKN-SFDG--I---KKLPW--KNLEYLDFRSNLLQGLFLDP-------SSNMKVFLISNNRFTREIPCL 72 (134)
Q Consensus 8 ~~~~~L~~L~l~~n-~l~~--~---~~~~~--~~L~~L~l~~n~l~~~~~~~-------l~~l~~L~l~~n~l~~~~~~~ 72 (134)
..-+.|+.|+|++| .+.. . .+.+. ..++.|++++|.+....... -++|++|+|++|.++..-...
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 45678999999985 6653 1 11111 78999999999987543222 568999999999988433322
Q ss_pred ccCCCCccccccCCccCcCCCCCcEEEccCCc---ccc----CccccccCCCCCcEEEcCCCccc
Q 045549 73 ICNLSTIEIPWPIPETLSKGSNLRTLNFNGNE---LVG----SVPRSLLNCENLQVVDLGNNKIE 130 (134)
Q Consensus 73 ~~~l~~L~~~~~~~~~~~~~~~L~~l~l~~n~---l~~----~~p~~~~~l~~L~~L~l~~n~l~ 130 (134)
+ -+.+..-+.|+.|+++++. +.. .+...+..-++|..|+++.|.+.
T Consensus 118 l------------a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 118 L------------LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp H------------HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred H------------HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 2 2344555779999998653 331 13345556678999999877653
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.38 E-value=0.00058 Score=40.80 Aligned_cols=55 Identities=20% Similarity=0.313 Sum_probs=33.7
Q ss_pred cEEEccCcccC-CcCCCC-CCCccEEEcccCccccccCccccCCCCccccccCCccCcCCCCCcEEEccCCcc
Q 045549 35 EYLDFRSNLLQ-GLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNEL 105 (134)
Q Consensus 35 ~~L~l~~n~l~-~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~L~~l~l~~n~l 105 (134)
..++.+++.++ ..+|.. ..++++|+|++|+++ .++ +..|..+++|+.++|.+|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~-~l~---------------~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLT-ALP---------------PGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCS-SCC---------------TTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCCcCCCEEECCCCcCC-ccC---------------hhhhhhccccCEEEecCCCe
Confidence 35667777766 124433 556778888888777 333 33445566667777777655
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.38 E-value=0.0024 Score=44.76 Aligned_cols=119 Identities=14% Similarity=0.095 Sum_probs=67.0
Q ss_pred ccccCCcccEEEcCCCccCCCCcccc---cCCcEEEccCcccCCcCCCCCCCccEEEcccCccccccCccccCCCCccc-
Q 045549 6 VTQEVCRDIKIQFGKNSFDGIKKLPW---KNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEI- 81 (134)
Q Consensus 6 ~~~~~~~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~n~l~~~~~~~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~- 81 (134)
.+..+..++.+.+..+.. .+....+ ..++.+....+.+.........+|+.+.+..+ +...-..+|..+.+|+.
T Consensus 248 ~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i 325 (394)
T 4fs7_A 248 VFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSI 325 (394)
T ss_dssp TTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred cccccccceeEEcCCCcc-eeeccccccccccceeccCceeeccccccccccccccccccc-cceechhhhcCCCCCCEE
Confidence 344444555555544322 2222221 44455444444333322233667777777654 44344566767766665
Q ss_pred -----cccC-CccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCC
Q 045549 82 -----PWPI-PETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNN 127 (134)
Q Consensus 82 -----~~~~-~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 127 (134)
...+ ..+|.+|.+|+.+.+..+ ++..-..+|.++.+|+.+++..+
T Consensus 326 ~lp~~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 326 DLPYLVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCCTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred EeCCcccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 1222 346778889999988776 55233457888889988887543
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.28 E-value=4.2e-05 Score=48.25 Aligned_cols=34 Identities=12% Similarity=0.096 Sum_probs=17.8
Q ss_pred CCcEEEccCC-ccccCccccccCCCCCcEEEcCCC
Q 045549 94 NLRTLNFNGN-ELVGSVPRSLLNCENLQVVDLGNN 127 (134)
Q Consensus 94 ~L~~l~l~~n-~l~~~~p~~~~~l~~L~~L~l~~n 127 (134)
+|+.|+++++ +++..--..+..+++|+.|+++++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence 4566666654 344222223455666666666655
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.22 E-value=0.0013 Score=46.09 Aligned_cols=120 Identities=12% Similarity=0.084 Sum_probs=60.6
Q ss_pred ccccccccCCcccEEEcCCCccCCCCcccc---cCCcEEEccCcccCCcCC---CCCCCccEEEcccCccccccCccccC
Q 045549 2 LEEEVTQEVCRDIKIQFGKNSFDGIKKLPW---KNLEYLDFRSNLLQGLFL---DPSSNMKVFLISNNRFTREIPCLICN 75 (134)
Q Consensus 2 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~n~l~~~~~---~~l~~l~~L~l~~n~l~~~~~~~~~~ 75 (134)
|....|.++.+|+.+.+.. .++.+.+..+ .+|+.+.+..+ ++.... ..+..|+.+.+..+ +...-..+|..
T Consensus 62 Ig~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~ 138 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG 138 (394)
T ss_dssp ECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred hHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence 4456788889999999975 4766766554 77888888655 332211 11445555444332 22122233333
Q ss_pred CCCccc------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcC
Q 045549 76 LSTIEI------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLG 125 (134)
Q Consensus 76 l~~L~~------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~ 125 (134)
+..... ...-...|..+.+|+.+.+..+... .-...|.++.+|+.+.+.
T Consensus 139 ~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~ 193 (394)
T 4fs7_A 139 CDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLP 193 (394)
T ss_dssp CCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCC
T ss_pred ccccccccCccccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcC
Confidence 322221 0111234555666666666544322 223345555555555443
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.13 E-value=0.0033 Score=44.12 Aligned_cols=73 Identities=12% Similarity=0.145 Sum_probs=31.6
Q ss_pred cccccCCcccEEEcCCCccCCCCcccc---cCCcEEEccCcccCCcC---CCCCCCccEEEcccCccccccCccccCCCC
Q 045549 5 EVTQEVCRDIKIQFGKNSFDGIKKLPW---KNLEYLDFRSNLLQGLF---LDPSSNMKVFLISNNRFTREIPCLICNLST 78 (134)
Q Consensus 5 ~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~n~l~~~~---~~~l~~l~~L~l~~n~l~~~~~~~~~~l~~ 78 (134)
..|.++..|+.+.+..+. ..+....+ ..|+.+.+... ++... ...+.+|+.+++..+ ++..-..+|..|.+
T Consensus 259 ~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEeccccc-ceecCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 345555666666665432 22333222 55565555422 22211 111456666666543 33222333444444
Q ss_pred cc
Q 045549 79 IE 80 (134)
Q Consensus 79 L~ 80 (134)
|+
T Consensus 336 L~ 337 (394)
T 4gt6_A 336 LE 337 (394)
T ss_dssp CC
T ss_pred CC
Confidence 33
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.06 E-value=0.0036 Score=43.55 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=14.3
Q ss_pred CCCccEEEcccCccccccCccccCCCCcc
Q 045549 52 SSNMKVFLISNNRFTREIPCLICNLSTIE 80 (134)
Q Consensus 52 l~~l~~L~l~~n~l~~~~~~~~~~l~~L~ 80 (134)
+.+|+.+.+.++.++..-..+|..+.+|+
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred ccccccccccccccceehhhhhcCCCCCC
Confidence 45566666665555533333444444333
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.17 E-value=0.0009 Score=42.92 Aligned_cols=84 Identities=18% Similarity=0.230 Sum_probs=58.2
Q ss_pred cCCcEEEccCc-ccCCcCC----C---CCCCccEEEcccCccccccCccccCCCCccccccCCccCcCCCCCcEEEccCC
Q 045549 32 KNLEYLDFRSN-LLQGLFL----D---PSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGN 103 (134)
Q Consensus 32 ~~L~~L~l~~n-~l~~~~~----~---~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~L~~l~l~~n 103 (134)
..|+.|++++| .+..... . .-+.|+.|+|++|.+.......+ .+.+..-+.|+.|+|+.|
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~al------------A~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGL------------IELIETSPSLRVLNVESN 108 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTH------------HHHHHHCSSCCEEECCSS
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHH------------HHHHhcCCccCeEecCCC
Confidence 78999999986 6553111 1 15689999999999884433332 223444578999999999
Q ss_pred ccccC----ccccccCCCCCcEEEcCCC
Q 045549 104 ELVGS----VPRSLLNCENLQVVDLGNN 127 (134)
Q Consensus 104 ~l~~~----~p~~~~~l~~L~~L~l~~n 127 (134)
.|... +-..+..-+.|+.|++++|
T Consensus 109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 109 FLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp BCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred cCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 99742 2334555667999999865
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.57 E-value=0.054 Score=37.55 Aligned_cols=57 Identities=11% Similarity=0.085 Sum_probs=33.6
Q ss_pred ccccCCcccEEEcCCCccCCCCcccc---cCCcEEEccCcccCCcCCCC---CCCccEEEcccC
Q 045549 6 VTQEVCRDIKIQFGKNSFDGIKKLPW---KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNN 63 (134)
Q Consensus 6 ~~~~~~~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n 63 (134)
.+.++..++.+.+..+ ++.++...+ .+|+.+.+.++.++.+.... +.+|+.+++..+
T Consensus 258 aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 258 LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred ccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 3444555555555432 433444332 67888888877666443333 678888888654
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.31 E-value=0.17 Score=35.33 Aligned_cols=75 Identities=11% Similarity=0.202 Sum_probs=51.8
Q ss_pred CCCccEEEcccCccccccCccccCCCCccc------cccC-CccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEc
Q 045549 52 SSNMKVFLISNNRFTREIPCLICNLSTIEI------PWPI-PETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDL 124 (134)
Q Consensus 52 l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~------~~~~-~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l 124 (134)
+..|+.+.+.. .+...-..+|..+.+|+. ...+ ..+|.+|.+|+.+.+..+ ++..-..+|.++.+|+.+++
T Consensus 287 c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 287 CPALQDIEFSS-RITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEY 364 (394)
T ss_dssp CTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEE
T ss_pred ccccccccCCC-cccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEE
Confidence 56777777753 344355566777777766 1222 346888999999999765 55233557999999999999
Q ss_pred CCCc
Q 045549 125 GNNK 128 (134)
Q Consensus 125 ~~n~ 128 (134)
.++.
T Consensus 365 ~~~~ 368 (394)
T 4gt6_A 365 SGSR 368 (394)
T ss_dssp SSCH
T ss_pred CCce
Confidence 8764
No 164
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=94.34 E-value=0.064 Score=33.67 Aligned_cols=64 Identities=3% Similarity=0.027 Sum_probs=44.8
Q ss_pred CCCccEEEcccCccccccCccccCCCCccccccCCccCcCCCCCcEEEccCCc-cccCccccccCC----CCCcEEEcCC
Q 045549 52 SSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNE-LVGSVPRSLLNC----ENLQVVDLGN 126 (134)
Q Consensus 52 l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~L~~l~l~~n~-l~~~~p~~~~~l----~~L~~L~l~~ 126 (134)
-..|+.||++++.++.. . -..+..+++|+.|+++++. ++..--..+..+ ++|+.|++++
T Consensus 60 ~~~L~~LDLs~~~Itd~---G-------------L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~ 123 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSI---G-------------FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIIS 123 (176)
T ss_dssp CCCEEEEEEESCCCCGG---G-------------GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEES
T ss_pred CceEeEEeCcCCCccHH---H-------------HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCC
Confidence 44699999999987621 1 1234678999999999984 663322345554 4799999999
Q ss_pred C-cccc
Q 045549 127 N-KIED 131 (134)
Q Consensus 127 n-~l~~ 131 (134)
| ++++
T Consensus 124 C~~ITD 129 (176)
T 3e4g_A 124 CGNVTD 129 (176)
T ss_dssp CTTCCH
T ss_pred CCcCCH
Confidence 7 4765
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=63.27 E-value=9.4 Score=21.21 Aligned_cols=14 Identities=21% Similarity=0.237 Sum_probs=7.3
Q ss_pred cCcCCCCCcEEEcc
Q 045549 88 TLSKGSNLRTLNFN 101 (134)
Q Consensus 88 ~~~~~~~L~~l~l~ 101 (134)
.|..|.+|+.+.+.
T Consensus 38 aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 38 MFSGCTALEKLILT 51 (100)
T ss_dssp SSTTCTTCCCEEEC
T ss_pred HHhccCCccEEEEc
Confidence 45555555555544
Done!