BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045551
         (161 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3TDS|E Chain E, Crystal Structure Of Hsc F194i
 pdb|3TDS|A Chain A, Crystal Structure Of Hsc F194i
 pdb|3TDS|B Chain B, Crystal Structure Of Hsc F194i
 pdb|3TDS|C Chain C, Crystal Structure Of Hsc F194i
 pdb|3TDS|D Chain D, Crystal Structure Of Hsc F194i
          Length = 268

 Score = 30.4 bits (67), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 7/53 (13%)

Query: 46 LYFGLGFLMVQTLGFMRLTFWELSWDVMEPICFFVSSLDFALAYGFFLRTSTE 98
          LY G+G L++ T+G        L  D   P+   V  L FA+A    + T TE
Sbjct: 39 LYVGIGILLIFTIG-------GLLTDAGSPMTKIVMGLSFAIALSLVIMTGTE 84


>pdb|3TE1|A Chain A, Crystal Structure Of Hsc T84a
 pdb|3TE1|B Chain B, Crystal Structure Of Hsc T84a
 pdb|3TE1|C Chain C, Crystal Structure Of Hsc T84a
 pdb|3TE1|D Chain D, Crystal Structure Of Hsc T84a
 pdb|3TE1|E Chain E, Crystal Structure Of Hsc T84a
          Length = 268

 Score = 30.4 bits (67), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 7/53 (13%)

Query: 46 LYFGLGFLMVQTLGFMRLTFWELSWDVMEPICFFVSSLDFALAYGFFLRTSTE 98
          LY G+G L++ T+G        L  D   P+   V  L FA+A    + T TE
Sbjct: 39 LYVGIGILLIFTIG-------GLLTDAGSPMTKIVMGLSFAIALSLVIMTGTE 84


>pdb|3TDX|A Chain A, Crystal Structure Of Hsc L82v
 pdb|3TDX|B Chain B, Crystal Structure Of Hsc L82v
 pdb|3TDX|C Chain C, Crystal Structure Of Hsc L82v
 pdb|3TDX|D Chain D, Crystal Structure Of Hsc L82v
 pdb|3TDX|E Chain E, Crystal Structure Of Hsc L82v
          Length = 268

 Score = 30.4 bits (67), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 7/53 (13%)

Query: 46 LYFGLGFLMVQTLGFMRLTFWELSWDVMEPICFFVSSLDFALAYGFFLRTSTE 98
          LY G+G L++ T+G        L  D   P+   V  L FA+A    + T TE
Sbjct: 39 LYVGIGILLIFTIG-------GLLTDAGSPMTKIVMGLSFAIALSLVIMTGTE 84


>pdb|3TDO|A Chain A, Crystal Structure Of Hsc At Ph 9.0
 pdb|3TDO|B Chain B, Crystal Structure Of Hsc At Ph 9.0
 pdb|3TDO|C Chain C, Crystal Structure Of Hsc At Ph 9.0
 pdb|3TDO|D Chain D, Crystal Structure Of Hsc At Ph 9.0
 pdb|3TDO|E Chain E, Crystal Structure Of Hsc At Ph 9.0
 pdb|3TDR|A Chain A, Crystal Structure Of Hsc At Ph 7.5
 pdb|3TDR|B Chain B, Crystal Structure Of Hsc At Ph 7.5
 pdb|3TDR|C Chain C, Crystal Structure Of Hsc At Ph 7.5
 pdb|3TDR|D Chain D, Crystal Structure Of Hsc At Ph 7.5
 pdb|3TDR|E Chain E, Crystal Structure Of Hsc At Ph 7.5
 pdb|3TDR|F Chain F, Crystal Structure Of Hsc At Ph 7.5
 pdb|3TDR|G Chain G, Crystal Structure Of Hsc At Ph 7.5
 pdb|3TDR|H Chain H, Crystal Structure Of Hsc At Ph 7.5
 pdb|3TDR|I Chain I, Crystal Structure Of Hsc At Ph 7.5
 pdb|3TDR|J Chain J, Crystal Structure Of Hsc At Ph 7.5
          Length = 268

 Score = 30.4 bits (67), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 7/53 (13%)

Query: 46 LYFGLGFLMVQTLGFMRLTFWELSWDVMEPICFFVSSLDFALAYGFFLRTSTE 98
          LY G+G L++ T+G        L  D   P+   V  L FA+A    + T TE
Sbjct: 39 LYVGIGILLIFTIG-------GLLTDAGSPMTKIVMGLSFAIALSLVIMTGTE 84


>pdb|3TE2|A Chain A, Crystal Structure Of Hsc K16s
 pdb|3TE2|B Chain B, Crystal Structure Of Hsc K16s
 pdb|3TE2|C Chain C, Crystal Structure Of Hsc K16s
 pdb|3TE2|D Chain D, Crystal Structure Of Hsc K16s
 pdb|3TE2|E Chain E, Crystal Structure Of Hsc K16s
          Length = 268

 Score = 30.4 bits (67), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 7/53 (13%)

Query: 46 LYFGLGFLMVQTLGFMRLTFWELSWDVMEPICFFVSSLDFALAYGFFLRTSTE 98
          LY G+G L++ T+G        L  D   P+   V  L FA+A    + T TE
Sbjct: 39 LYVGIGILLIFTIG-------GLLTDAGSPMTKIVMGLSFAIALSLVIMTGTE 84


>pdb|3TE0|A Chain A, Crystal Structure Of Hsc K148e
 pdb|3TE0|B Chain B, Crystal Structure Of Hsc K148e
 pdb|3TE0|C Chain C, Crystal Structure Of Hsc K148e
 pdb|3TE0|D Chain D, Crystal Structure Of Hsc K148e
 pdb|3TE0|E Chain E, Crystal Structure Of Hsc K148e
          Length = 268

 Score = 30.4 bits (67), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 7/53 (13%)

Query: 46 LYFGLGFLMVQTLGFMRLTFWELSWDVMEPICFFVSSLDFALAYGFFLRTSTE 98
          LY G+G L++ T+G        L  D   P+   V  L FA+A    + T TE
Sbjct: 39 LYVGIGILLIFTIG-------GLLTDAGSPMTKIVMGLSFAIALSLVIMTGTE 84


>pdb|3TDP|A Chain A, Crystal Structure Of Hsc At Ph 4.5
 pdb|3TDP|B Chain B, Crystal Structure Of Hsc At Ph 4.5
 pdb|3TDP|C Chain C, Crystal Structure Of Hsc At Ph 4.5
 pdb|3TDP|D Chain D, Crystal Structure Of Hsc At Ph 4.5
 pdb|3TDP|E Chain E, Crystal Structure Of Hsc At Ph 4.5
          Length = 257

 Score = 30.4 bits (67), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 7/53 (13%)

Query: 46 LYFGLGFLMVQTLGFMRLTFWELSWDVMEPICFFVSSLDFALAYGFFLRTSTE 98
          LY G+G L++ T+G        L  D   P+   V  L FA+A    + T TE
Sbjct: 37 LYVGIGILLIFTIG-------GLLTDAGSPMTKIVMGLSFAIALSLVIMTGTE 82


>pdb|4GH4|B Chain B, Crystal Structure Of Foot And Mouth Disease Virus A22
           Serotype
          Length = 207

 Score = 26.6 bits (57), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 115 KLMRAHNFD---EEKYNHLRKLFYPAP-EGCYGHALPSLHHFKASW 156
           +  + H FD   ++ + HL KL  P   +G YGH + S  + +  W
Sbjct: 49  RFFKKHLFDWTPDKAFGHLEKLELPTDHKGVYGHLVDSFAYMRNGW 94


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.137    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,859,331
Number of Sequences: 62578
Number of extensions: 176858
Number of successful extensions: 361
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 361
Number of HSP's gapped (non-prelim): 8
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)