Query 045551
Match_columns 161
No_of_seqs 110 out of 233
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 05:03:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045551.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045551hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1eh1_A Ribosome recycling fact 41.7 32 0.0011 26.9 4.5 40 6-45 96-135 (185)
2 1is1_A Ribosome recycling fact 40.8 32 0.0011 26.9 4.4 40 6-45 95-134 (185)
3 1wqg_A Ribosome recycling fact 39.9 32 0.0011 26.9 4.2 40 6-45 95-134 (185)
4 1ge9_A Ribosome recycling fact 39.9 34 0.0012 26.8 4.4 40 6-45 97-136 (184)
5 1dd5_A Ribosome recycling fact 39.6 33 0.0011 26.9 4.2 40 6-45 95-134 (185)
6 1ise_A Ribosome recycling fact 39.5 32 0.0011 26.9 4.2 39 7-45 96-134 (185)
7 4gfq_A Ribosome-recycling fact 38.7 30 0.001 27.7 4.0 41 6-46 119-159 (209)
8 3sol_A Type II secretion pathw 36.9 3.7 0.00012 29.3 -1.6 48 83-133 11-59 (94)
9 4a56_A PULS, pullulanase secre 32.1 4.1 0.00014 28.9 -1.9 48 83-133 11-59 (93)
10 3ug9_A Archaeal-type opsin 1, 30.6 1E+02 0.0036 26.2 6.2 51 39-94 65-118 (333)
11 3lhp_S 4E10_D0_1ISEA_004_N (T9 29.2 88 0.003 23.1 4.8 38 6-45 35-72 (123)
12 4e0t_A Cyclic dipeptide N-pren 28.9 28 0.00095 30.3 2.4 58 63-138 101-169 (428)
13 3rvy_A ION transport protein; 27.2 51 0.0017 26.0 3.5 13 66-78 195-207 (285)
14 1mzw_B U4/U6 snRNP 60KDA prote 23.9 6.4 0.00022 22.5 -1.8 6 74-79 11-16 (31)
15 3o8s_A Nudix hydrolase, ADP-ri 23.2 17 0.00059 27.5 0.0 24 115-138 22-45 (206)
16 3utk_A Lipoprotein OUTS; neste 21.7 4.5 0.00015 30.6 -3.5 45 83-130 48-93 (133)
17 4av3_A K(+)-stimulated pyropho 21.5 3.5E+02 0.012 25.5 8.5 57 25-87 42-98 (735)
18 1a32_A Ribosomal protein S15; 20.1 1.3E+02 0.0045 20.7 4.1 45 91-135 41-85 (88)
No 1
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=41.75 E-value=32 Score=26.93 Aligned_cols=40 Identities=23% Similarity=0.215 Sum_probs=31.4
Q ss_pred hhhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 045551 6 ESIISETVATPNDPRRKELEKMEMQKAIIDQKAKAQVRGE 45 (161)
Q Consensus 6 ~~~~~~~~~~~~d~~r~eL~~le~~K~~id~~A~~~~~r~ 45 (161)
+..|.+++|+..++.|+||...-+...+=.+.|-+..||-
T Consensus 96 G~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrd 135 (185)
T 1eh1_A 96 GDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIRRE 135 (185)
T ss_dssp TTEEEEECCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999998887776666666666654
No 2
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=40.80 E-value=32 Score=26.89 Aligned_cols=40 Identities=25% Similarity=0.288 Sum_probs=31.6
Q ss_pred hhhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 045551 6 ESIISETVATPNDPRRKELEKMEMQKAIIDQKAKAQVRGE 45 (161)
Q Consensus 6 ~~~~~~~~~~~~d~~r~eL~~le~~K~~id~~A~~~~~r~ 45 (161)
+..|.+++|+..++.|+||...-+...+=.+.|-+..||-
T Consensus 95 G~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrd 134 (185)
T 1is1_A 95 GTIIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIRRD 134 (185)
T ss_dssp TTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568889999999999999998887776666666666654
No 3
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=39.91 E-value=32 Score=26.90 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=31.6
Q ss_pred hhhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 045551 6 ESIISETVATPNDPRRKELEKMEMQKAIIDQKAKAQVRGE 45 (161)
Q Consensus 6 ~~~~~~~~~~~~d~~r~eL~~le~~K~~id~~A~~~~~r~ 45 (161)
+..|.+++|+..++.|+||...-+...+=.+.|-+..||-
T Consensus 95 G~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrd 134 (185)
T 1wqg_A 95 GALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIRRK 134 (185)
T ss_dssp SSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468888999999999999998887776666666666654
No 4
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1
Probab=39.88 E-value=34 Score=26.76 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=32.1
Q ss_pred hhhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 045551 6 ESIISETVATPNDPRRKELEKMEMQKAIIDQKAKAQVRGE 45 (161)
Q Consensus 6 ~~~~~~~~~~~~d~~r~eL~~le~~K~~id~~A~~~~~r~ 45 (161)
+..|.+++|+..++.|+||...-+...+=.+.|-+..||-
T Consensus 97 G~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrd 136 (184)
T 1ge9_A 97 GNVIRVTLPPLTEERRRELVRLLHKITEEARVRVRNVRRE 136 (184)
T ss_dssp TTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568889999999999999998887777666676666654
No 5
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=39.60 E-value=33 Score=26.88 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=31.5
Q ss_pred hhhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 045551 6 ESIISETVATPNDPRRKELEKMEMQKAIIDQKAKAQVRGE 45 (161)
Q Consensus 6 ~~~~~~~~~~~~d~~r~eL~~le~~K~~id~~A~~~~~r~ 45 (161)
+..|.+++|+..++.|+||...-+...+=.+.|-+..||-
T Consensus 95 G~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrd 134 (185)
T 1dd5_A 95 GNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIRRE 134 (185)
T ss_dssp SSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468889999999999999998887776666666666654
No 6
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=39.53 E-value=32 Score=26.93 Aligned_cols=39 Identities=26% Similarity=0.230 Sum_probs=31.1
Q ss_pred hhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 045551 7 SIISETVATPNDPRRKELEKMEMQKAIIDQKAKAQVRGE 45 (161)
Q Consensus 7 ~~~~~~~~~~~d~~r~eL~~le~~K~~id~~A~~~~~r~ 45 (161)
..|.+++|+..++.|+||...-+...+=.+.|-+..||-
T Consensus 96 ~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrd 134 (185)
T 1ise_A 96 SDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVGRD 134 (185)
T ss_dssp SEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999998887776666666666654
No 7
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=38.66 E-value=30 Score=27.69 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=32.8
Q ss_pred hhhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 045551 6 ESIISETVATPNDPRRKELEKMEMQKAIIDQKAKAQVRGEL 46 (161)
Q Consensus 6 ~~~~~~~~~~~~d~~r~eL~~le~~K~~id~~A~~~~~r~~ 46 (161)
+..|.+++|+..++.|+||....+...+=.+.|-+..||-.
T Consensus 119 G~~Iri~iP~LTeErRkelvK~ak~~~E~aKvaIRniRrda 159 (209)
T 4gfq_A 119 GTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDG 159 (209)
T ss_dssp SSCEEEECCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeeeCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688899999999999999998888777777766666643
No 8
>3sol_A Type II secretion pathway related protein; general secretory pathway, protein transport, pilotin; 1.90A {Escherichia coli}
Probab=36.93 E-value=3.7 Score=29.29 Aligned_cols=48 Identities=8% Similarity=0.073 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHH
Q 045551 83 LDFALAYGFFLRTSTEPTFEGYFHRR-FKSRQNKLMRAHNFDEEKYNHLRKL 133 (161)
Q Consensus 83 ~~~i~~Y~yfl~t~rd~sy~~~~~~~-~~~r~~kl~~~~~FD~~ry~~L~~e 133 (161)
+..++++.|.-. +..|+++-+.. +.+...++.+++|+|...|+.|.+.
T Consensus 11 A~L~A~~~yLK~---~C~~~diPd~~~I~~~a~~~A~~~gWD~~~y~~l~~~ 59 (94)
T 3sol_A 11 ASIVSATRYLKM---RCNRSDLPDEQSILNVANRIAIGKGWQSLTQEDIRKH 59 (94)
T ss_dssp HHHHHHHHHHHH---HSCCTTSCCHHHHHHHHHHHHHHTTCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHH---cCCCCCCCcHHHHHHHHHHHHHHcCCChhhhHHHHHH
Confidence 445556655543 33444443443 4444567889999998888776543
No 9
>4a56_A PULS, pullulanase secretion protein PULS; protein transport, T2SS; 1.24A {Klebsiella oxytoca}
Probab=32.06 E-value=4.1 Score=28.95 Aligned_cols=48 Identities=6% Similarity=-0.000 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHH
Q 045551 83 LDFALAYGFFLRTSTEPTFEGYFHRR-FKSRQNKLMRAHNFDEEKYNHLRKL 133 (161)
Q Consensus 83 ~~~i~~Y~yfl~t~rd~sy~~~~~~~-~~~r~~kl~~~~~FD~~ry~~L~~e 133 (161)
+..++++.|.-. +..|+++-+.. +.+...++.+++|+|...|+.|.+.
T Consensus 11 a~L~A~~~yLK~---~C~~~diPd~~~I~~~a~~~A~~~~Wd~~~y~~l~~~ 59 (93)
T 4a56_A 11 ASVAAGARYLKN---KCNRSDLPADEAINRAAINVGKKRGWANIDANLLSQR 59 (93)
T ss_dssp HHHHHHHHHHHH---HSCCTTSCCHHHHHHHHHHHHHHHTCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHH---cCCCCCCCcHHHHHHHHHHHHHHcCCChhhHHHHHHH
Confidence 344555555433 33444443333 4444567889999998888766543
No 10
>3ug9_A Archaeal-type opsin 1, archaeal-type opsin 2; microbialrhodopsin, seven-transmembrane, light-gated cation membrane protein; HET: RET OLA; 2.30A {Chlamydomonas reinhardtii}
Probab=30.55 E-value=1e+02 Score=26.19 Aligned_cols=51 Identities=8% Similarity=0.083 Sum_probs=31.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhhheee-eecccchhhHHHHHHhHHHHHHH--HHHHH
Q 045551 39 KAQVRGELYFGLGFLMVQTLGFMRLTFW-ELSWDVMEPICFFVSSLDFALAY--GFFLR 94 (161)
Q Consensus 39 ~~~~~r~~w~gl~~l~~Q~g~l~rLTf~-e~SWDVMEPVTYFvt~~~~i~~Y--~yfl~ 94 (161)
...+++.+|.++++|++-..+|+.++|= .-.|- .-|..+ .+.+++. +||..
T Consensus 65 ~~~~~~~lWvvfa~M~aatlfF~~~~~rv~~~wR----~~~v~~-It~IAai~~~Yf~M 118 (333)
T 3ug9_A 65 KLAANILQWITFALSALCLMFYGYQTWKSTCGWE----EIYVAT-IEMIKFIIEYFHEF 118 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--------CCHH----HHHHHH-HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeE----EEeHHH-HHHHHHHHHHHHHH
Confidence 3457899999999999999998888876 77784 223334 6666666 66654
No 11
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8
Probab=29.19 E-value=88 Score=23.11 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=30.2
Q ss_pred hhhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 045551 6 ESIISETVATPNDPRRKELEKMEMQKAIIDQKAKAQVRGE 45 (161)
Q Consensus 6 ~~~~~~~~~~~~d~~r~eL~~le~~K~~id~~A~~~~~r~ 45 (161)
.+.|.+++| .+..|++|..+-....+=.+.|-+..||-
T Consensus 35 ~~~IRl~iP--TEERRkeLvK~akk~aEeaKVaIRNIRRD 72 (123)
T 3lhp_S 35 KAAVRKVFP--TEERIKDWLKIVRGEAEQARVAVRNVGRD 72 (123)
T ss_dssp HHHHTTSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEeeCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 356888888 89999999999888877777777766664
No 12
>4e0t_A Cyclic dipeptide N-prenyltransferase; PT-fold, C(3)B-prenyltransferase; 2.25A {Aspergillus fumigatus} PDB: 4e0u_A*
Probab=28.94 E-value=28 Score=30.29 Aligned_cols=58 Identities=17% Similarity=0.134 Sum_probs=39.1
Q ss_pred heeeeecccc----------hhhHHHHHHhHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHH
Q 045551 63 LTFWELSWDV----------MEPICFFVSSLDFALAYGFFLRTSTEPTFEGYFHRRFKSRQNKLMRA-HNFDEEKYNHLR 131 (161)
Q Consensus 63 LTf~e~SWDV----------MEPVTYFvt~~~~i~~Y~yfl~t~rd~sy~~~~~~~~~~r~~kl~~~-~~FD~~ry~~L~ 131 (161)
.| .||||++ +|||..+.| |..|+-......+. ..+|.+. .|+|.+.|+.+.
T Consensus 101 g~-~E~S~n~~~~~p~VR~~~EPi~~~~g-------------t~~DP~n~~a~~~~----l~~La~~~~~~Dl~w~~~f~ 162 (428)
T 4e0t_A 101 MT-VELSQNFQRSGSTTRIAFEPVRYQAS-------------VGHDRFNRTSVNAF----FSQLQLLVKSVNIELHHLLS 162 (428)
T ss_dssp BS-EEEEEEECSSCEEEEEEECCBCGGGG-------------TTSSTTCCSHHHHH----HHHHHHHCTTCCCHHHHHHH
T ss_pred cc-EEEEEEECCCCCeEEEEEEeCCCcCC-------------CCCCccchHHHHHH----HHHHHhcCCCCCHHHHHHHH
Confidence 57 9999996 788887543 35566444443322 2344444 499999999999
Q ss_pred HHhCCCC
Q 045551 132 KLFYPAP 138 (161)
Q Consensus 132 ~e~~~~~ 138 (161)
+.+....
T Consensus 163 ~~l~~~~ 169 (428)
T 4e0t_A 163 EHLTLTA 169 (428)
T ss_dssp HHHSCCH
T ss_pred HHhcCCH
Confidence 9997443
No 13
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=27.24 E-value=51 Score=26.03 Aligned_cols=13 Identities=15% Similarity=0.187 Sum_probs=9.8
Q ss_pred eeecccchhhHHH
Q 045551 66 WELSWDVMEPICF 78 (161)
Q Consensus 66 ~e~SWDVMEPVTY 78 (161)
..|++|+|.|+|-
T Consensus 195 ~g~~~di~~p~~~ 207 (285)
T 3rvy_A 195 ESWSMGIVRPLME 207 (285)
T ss_dssp TTCCCCCHHHHHT
T ss_pred CCCcHHHHHHHHH
Confidence 3466789999985
No 14
>1mzw_B U4/U6 snRNP 60KDA protein; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
Probab=23.89 E-value=6.4 Score=22.53 Aligned_cols=6 Identities=67% Similarity=1.315 Sum_probs=3.5
Q ss_pred hhHHHH
Q 045551 74 EPICFF 79 (161)
Q Consensus 74 EPVTYF 79 (161)
||||+|
T Consensus 11 ePi~lF 16 (31)
T 1mzw_B 11 EPITLF 16 (31)
T ss_dssp CCSEET
T ss_pred CCeeec
Confidence 566654
No 15
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}
Probab=23.23 E-value=17 Score=27.50 Aligned_cols=24 Identities=13% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHhcCCCHHHHHHHHHHhCCCC
Q 045551 115 KLMRAHNFDEEKYNHLRKLFYPAP 138 (161)
Q Consensus 115 kl~~~~~FD~~ry~~L~~e~~~~~ 138 (161)
-.|.+..||++||++|.+-...+.
T Consensus 22 l~~~~~~~d~er~~~l~~~~~~~~ 45 (206)
T 3o8s_A 22 LAYGKDVYDMERFEEIRQIAAEML 45 (206)
T ss_dssp ------------------------
T ss_pred hccCCCchhHHHHHHHHHHHHHHH
Confidence 346689999999999987665544
No 16
>3utk_A Lipoprotein OUTS; nested (perpendicular) alpha-helical hairpins, protein trans pilot protein; 1.65A {Dickeya dadantii} PDB: 3uym_A
Probab=21.67 E-value=4.5 Score=30.57 Aligned_cols=45 Identities=9% Similarity=0.098 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHH-HHHHHHHHHHhcCCCHHHHHHH
Q 045551 83 LDFALAYGFFLRTSTEPTFEGYFHRR-FKSRQNKLMRAHNFDEEKYNHL 130 (161)
Q Consensus 83 ~~~i~~Y~yfl~t~rd~sy~~~~~~~-~~~r~~kl~~~~~FD~~ry~~L 130 (161)
+..++++.|.-. +..|+++-+.. +.+..-++++++|+|...|+.|
T Consensus 48 A~LtA~~~YLK~---~CgrsDiPd~~~I~r~av~~A~~rgWD~s~y~~l 93 (133)
T 3utk_A 48 ASLVAASKYLRV---QCERSDLPDDGTILKTAVNVAVQKGWDTGRYQSL 93 (133)
T ss_dssp HHHHHHHHHHHH---HSCCTTSCCHHHHHHHHHHHHHHTTCCTTSCTTS
T ss_pred HHHHHHHHHHHH---cCCCccCCcHHHHHHHHHHHHHHcCCCchhhHHH
Confidence 444555555443 33444444443 4445567888999997665443
No 17
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=21.53 E-value=3.5e+02 Score=25.46 Aligned_cols=57 Identities=18% Similarity=0.203 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhheeeeecccchhhHHHHHHhHHHHH
Q 045551 25 EKMEMQKAIIDQKAKAQVRGELYFGLGFLMVQTLGFMRLTFWELSWDVMEPICFFVSSLDFAL 87 (161)
Q Consensus 25 ~~le~~K~~id~~A~~~~~r~~w~gl~~l~~Q~g~l~rLTf~e~SWDVMEPVTYFvt~~~~i~ 87 (161)
+.|+++.+.|.+-|...-+|.......+.++=..+++. .++|. -+|+|.+|...+.+
T Consensus 42 ~~M~eIa~~I~eGA~afL~rqyk~i~~~~vv~~~ll~~----~~~~~--~ai~Fl~Ga~~S~~ 98 (735)
T 4av3_A 42 ERMKEISSYIRSGADSFLAHETKAIFKVAIVIAILLMI----FTTWQ--TGVAFLLGAVMSAS 98 (735)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTCHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhH--HHHHHHHHHHHHHH
Confidence 46888888999988888777765433333222222222 24665 57999999776654
No 18
>1a32_A Ribosomal protein S15; multiwavelength anomalous diffraction, protein-RNA, ribosomal protein interactions, ribosome, RNA-binding; 2.10A {Geobacillus stearothermophilus} SCOP: a.16.1.2 PDB: 1qd7_H
Probab=20.13 E-value=1.3e+02 Score=20.67 Aligned_cols=45 Identities=11% Similarity=0.072 Sum_probs=30.1
Q ss_pred HHHHhCCCCChHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhC
Q 045551 91 FFLRTSTEPTFEGYFHRRFKSRQNKLMRAHNFDEEKYNHLRKLFY 135 (161)
Q Consensus 91 yfl~t~rd~sy~~~~~~~~~~r~~kl~~~~~FD~~ry~~L~~e~~ 135 (161)
.+-.+++|+.-.--+-..+.+|+.=|---+.=|.++|..|.+++.
T Consensus 41 Hlk~hkKD~~srRgL~~lv~kRrkLL~YL~~~d~~rY~~li~~Lg 85 (88)
T 1a32_A 41 HLRVHKKDHHSRRGLLKMVGKRRRLLAYLRNKDVARYREIVEKLG 85 (88)
T ss_dssp HHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT
T ss_pred HHHhccccccchhHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhC
Confidence 344567888765555666666654443344558999999998874
Done!