Query 045551
Match_columns 161
No_of_seqs 110 out of 233
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 05:03:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045551.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045551hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtt1 f.23.34.1 (T:1-30) Pho 79.0 1.6 0.00011 23.3 3.8 26 73-99 1-26 (30)
2 d1ge9a_ d.67.3.1 (A:) Ribosome 28.2 32 0.0024 24.7 4.4 39 7-45 98-136 (184)
3 d1is1a_ d.67.3.1 (A:) Ribosome 28.1 33 0.0024 24.7 4.4 39 7-45 96-134 (185)
4 d1ek8a_ d.67.3.1 (A:) Ribosome 28.0 33 0.0024 24.7 4.4 39 7-45 96-134 (185)
5 d1wqga1 d.67.3.1 (A:2-184) Rib 26.5 34 0.0025 24.5 4.2 38 7-44 95-132 (183)
6 d1af7a1 a.58.1.1 (A:11-91) Che 25.8 31 0.0022 20.9 3.3 41 92-132 23-64 (81)
7 d1dd5a_ d.67.3.1 (A:) Ribosome 24.5 39 0.0029 24.2 4.2 39 7-45 95-133 (184)
8 d1eh1a_ d.67.3.1 (A:) Ribosome 23.6 46 0.0034 23.8 4.5 38 7-44 97-134 (185)
9 d1vs5o1 a.16.1.2 (O:1-88) Ribo 20.6 83 0.006 20.0 4.8 45 91-135 41-85 (88)
10 d1a32a_ a.16.1.2 (A:) Ribosoma 18.0 75 0.0054 20.0 4.1 44 92-135 41-84 (85)
No 1
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=79.00 E-value=1.6 Score=23.30 Aligned_cols=26 Identities=27% Similarity=0.232 Sum_probs=16.8
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHhCCCC
Q 045551 73 MEPICFFVSSLDFALAYGFFLRTSTEP 99 (161)
Q Consensus 73 MEPVTYFvt~~~~i~~Y~yfl~t~rd~ 99 (161)
||-|||.+-+...|+ ..+|.+.-||+
T Consensus 1 me~i~yv~ifac~i~-lfffaiffrep 26 (30)
T d2axtt1 1 METITYVFIFACIIA-LFFFAIFFREP 26 (30)
T ss_dssp CHHHHHHHHHHHHHH-HHHHHHHTSCC
T ss_pred CceeehHHHHHHHHH-HHHHHHHhcCC
Confidence 899999777665554 44555444544
No 2
>d1ge9a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Aquifex aeolicus [TaxId: 63363]}
Probab=28.20 E-value=32 Score=24.68 Aligned_cols=39 Identities=23% Similarity=0.282 Sum_probs=29.7
Q ss_pred hhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 045551 7 SIISETVATPNDPRRKELEKMEMQKAIIDQKAKAQVRGE 45 (161)
Q Consensus 7 ~~~~~~~~~~~d~~r~eL~~le~~K~~id~~A~~~~~r~ 45 (161)
..|.+++|+...+.|+||....+...+=.+.+-+..|+-
T Consensus 98 ~~Iri~iP~lT~E~R~~lvK~ak~~~E~aKv~iRniR~~ 136 (184)
T d1ge9a_ 98 NVIRVTLPPLTEERRRELVRLLHKITEEARVRVRNVRRE 136 (184)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 467888999999999999988877666555565555554
No 3
>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio parahaemolyticus [TaxId: 670]}
Probab=28.11 E-value=33 Score=24.69 Aligned_cols=39 Identities=26% Similarity=0.302 Sum_probs=28.9
Q ss_pred hhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 045551 7 SIISETVATPNDPRRKELEKMEMQKAIIDQKAKAQVRGE 45 (161)
Q Consensus 7 ~~~~~~~~~~~d~~r~eL~~le~~K~~id~~A~~~~~r~ 45 (161)
..|.+++|+...+.|+||....+...+=.+.+-+..||-
T Consensus 96 ~~Iri~iP~lT~E~R~elvK~~k~~~E~akv~iRniRr~ 134 (185)
T d1is1a_ 96 TIIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIRRD 134 (185)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeecCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788999999999999988777665555555555543
No 4
>d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia coli [TaxId: 562]}
Probab=28.04 E-value=33 Score=24.68 Aligned_cols=39 Identities=28% Similarity=0.279 Sum_probs=29.4
Q ss_pred hhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 045551 7 SIISETVATPNDPRRKELEKMEMQKAIIDQKAKAQVRGE 45 (161)
Q Consensus 7 ~~~~~~~~~~~d~~r~eL~~le~~K~~id~~A~~~~~r~ 45 (161)
..|.+++|+...+.|+||....+...+=.+.+-+..||-
T Consensus 96 ~~Iri~iP~lT~E~R~elvK~~k~~~E~~kv~iR~iRr~ 134 (185)
T d1ek8a_ 96 SDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRD 134 (185)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceecccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999888776666555565555554
No 5
>d1wqga1 d.67.3.1 (A:2-184) Ribosome recycling factor, RRF {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=26.49 E-value=34 Score=24.50 Aligned_cols=38 Identities=24% Similarity=0.303 Sum_probs=27.8
Q ss_pred hhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhHH
Q 045551 7 SIISETVATPNDPRRKELEKMEMQKAIIDQKAKAQVRG 44 (161)
Q Consensus 7 ~~~~~~~~~~~d~~r~eL~~le~~K~~id~~A~~~~~r 44 (161)
..|.+++|+..++.|+||....+...+=.+.+-+..||
T Consensus 95 ~~Irv~iP~lT~E~R~elvK~ak~~~E~aKv~iRniR~ 132 (183)
T d1wqga1 95 ALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIRR 132 (183)
T ss_dssp SCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999999998877665555555444444
No 6
>d1af7a1 a.58.1.1 (A:11-91) Chemotaxis receptor methyltransferase CheR, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=25.78 E-value=31 Score=20.93 Aligned_cols=41 Identities=12% Similarity=0.124 Sum_probs=28.0
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHH
Q 045551 92 FLRTSTEPTFEGYFHRRFKSRQNKLMRAHNF-DEEKYNHLRK 132 (161)
Q Consensus 92 fl~t~rd~sy~~~~~~~~~~r~~kl~~~~~F-D~~ry~~L~~ 132 (161)
+++.+....+...-+..+.+|..+.+++.|| |.+.|-++-+
T Consensus 23 ~i~~~~Gi~l~~~K~~~l~~RL~~rm~~~g~~s~~~Y~~~L~ 64 (81)
T d1af7a1 23 LIYQRAGIVLADHKRDMVYNRLVRRLRALGLDDFGRYLSMLE 64 (81)
T ss_dssp HHHHHHCCCCCGGGHHHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHhCCCCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3344445556666667788888899999999 5777654443
No 7
>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga maritima [TaxId: 2336]}
Probab=24.52 E-value=39 Score=24.19 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=28.4
Q ss_pred hhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 045551 7 SIISETVATPNDPRRKELEKMEMQKAIIDQKAKAQVRGE 45 (161)
Q Consensus 7 ~~~~~~~~~~~d~~r~eL~~le~~K~~id~~A~~~~~r~ 45 (161)
..|.+++|+...+.|++|....+...+=.+.+-+..||-
T Consensus 95 ~~Iri~iP~lT~E~R~elvK~~k~~~E~aKv~iR~iR~~ 133 (184)
T d1dd5a_ 95 NVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIRRE 133 (184)
T ss_dssp SCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999888776665555555555543
No 8
>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus thermophilus [TaxId: 274]}
Probab=23.60 E-value=46 Score=23.79 Aligned_cols=38 Identities=21% Similarity=0.202 Sum_probs=26.6
Q ss_pred hhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhHH
Q 045551 7 SIISETVATPNDPRRKELEKMEMQKAIIDQKAKAQVRG 44 (161)
Q Consensus 7 ~~~~~~~~~~~d~~r~eL~~le~~K~~id~~A~~~~~r 44 (161)
..|.+++|+...+.|+||....+...+=.+.+-+..|+
T Consensus 97 ~~Irv~iP~lT~E~R~elvK~~k~~~E~akv~iR~iR~ 134 (185)
T d1eh1a_ 97 DALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIRR 134 (185)
T ss_dssp TEEEEECCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999999988776555444444444444
No 9
>d1vs5o1 a.16.1.2 (O:1-88) Ribosomal protein S15 {Escherichia coli [TaxId: 562]}
Probab=20.63 E-value=83 Score=19.99 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=31.7
Q ss_pred HHHHhCCCCChHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhC
Q 045551 91 FFLRTSTEPTFEGYFHRRFKSRQNKLMRAHNFDEEKYNHLRKLFY 135 (161)
Q Consensus 91 yfl~t~rd~sy~~~~~~~~~~r~~kl~~~~~FD~~ry~~L~~e~~ 135 (161)
.+-.+++|+.-.--+...+.+|..-|.--+.=|.++|+.+.+++.
T Consensus 41 Hl~~~kKD~~s~rgL~~lv~kRkklL~YL~~~d~~~Y~~vi~~Lg 85 (88)
T d1vs5o1 41 HFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTRLIERLG 85 (88)
T ss_dssp HHHSSCCCCTTHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTT
T ss_pred HHHHcccccccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhC
Confidence 345567888876666777766655554445669999999988764
No 10
>d1a32a_ a.16.1.2 (A:) Ribosomal protein S15 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=18.03 E-value=75 Score=20.01 Aligned_cols=44 Identities=11% Similarity=0.074 Sum_probs=31.9
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhC
Q 045551 92 FLRTSTEPTFEGYFHRRFKSRQNKLMRAHNFDEEKYNHLRKLFY 135 (161)
Q Consensus 92 fl~t~rd~sy~~~~~~~~~~r~~kl~~~~~FD~~ry~~L~~e~~ 135 (161)
+-.+++|++-.--+...+.+|..-|.--+.-|.++|..+.+++.
T Consensus 41 lk~~kkD~~srrgL~~lv~~RrklL~YLrk~d~~~Y~~~i~~Lg 84 (85)
T d1a32a_ 41 LRVHKKDHHSRRGLLKMVGKRRRLLAYLRNKDVARYREIVEKLG 84 (85)
T ss_dssp HHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT
T ss_pred HHHCccccccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcC
Confidence 34567888876666777777665555556678899999998874
Done!