Query 045554
Match_columns 323
No_of_seqs 147 out of 898
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 05:07:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045554.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045554hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8s_M 50S ribosomal protein L 100.0 1.2E-52 4E-57 358.0 15.8 134 182-316 1-134 (136)
2 2zjr_J 50S ribosomal protein L 100.0 2E-53 6.8E-58 365.0 7.4 137 181-317 1-137 (142)
3 3bbo_O Ribosomal protein L16; 100.0 6.4E-53 2.2E-57 359.1 9.6 134 182-315 1-134 (135)
4 2ftc_I Mitochondrial ribosomal 100.0 5.4E-44 1.9E-48 298.0 13.0 115 197-311 1-118 (118)
5 1ffk_F Ribosomal protein L10E; 100.0 2.3E-36 8E-41 263.5 13.1 103 213-316 46-153 (157)
6 2pa2_A 60S ribosomal protein L 100.0 3.7E-35 1.2E-39 254.7 9.8 104 213-316 19-138 (151)
7 1vq8_H 50S ribosomal protein L 100.0 2.4E-34 8.3E-39 253.7 13.3 104 213-316 47-167 (171)
8 2zkr_h 60S ribosomal protein L 100.0 1.2E-33 4.2E-38 256.3 12.4 104 213-316 50-169 (214)
9 3j21_N 50S ribosomal protein L 100.0 1.4E-32 4.8E-37 244.3 9.8 105 213-317 47-169 (181)
10 4a17_H RPL10, 60S ribosomal pr 100.0 6.5E-32 2.2E-36 245.2 12.1 104 213-316 50-169 (215)
11 3j0l_J Ribosomal protein L10; 100.0 8.4E-32 2.9E-36 245.0 6.0 104 213-316 48-167 (219)
12 3iz5_I 60S ribosomal protein L 100.0 1E-31 3.6E-36 245.0 -10.9 104 213-316 50-169 (224)
13 3e17_A Tight junction protein 22.0 50 0.0017 24.2 2.4 37 277-317 39-80 (88)
14 4e34_A Golgi-associated PDZ an 21.6 50 0.0017 23.6 2.2 29 277-305 46-79 (87)
No 1
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
Probab=100.00 E-value=1.2e-52 Score=358.05 Aligned_cols=134 Identities=54% Similarity=0.994 Sum_probs=132.2
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCceeEeeceEEEEecCceecHHHHHHHHHHHHhhhccCceEEEEeCCCCceecCCcc
Q 045554 182 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGKIWVRIFPDKPVTARPAE 261 (323)
Q Consensus 182 ML~PKktKyrK~~KGRikG~s~~g~~L~fG~yGLkAlE~GrITa~QLEAAR~aInR~LKK~gklWIRVfP~~PVTKKPaE 261 (323)
||+||+|||+|+||||++|.+ ++++|.||+|||+++|+++||++||||||++|+|+|+++|++|||+|||+|||+||+|
T Consensus 1 ml~Pk~~k~rK~~kgr~~g~~-~g~~l~fG~~gL~a~e~~~it~~qiEaaR~ai~R~lkr~gk~wirv~P~~pvt~k~~e 79 (136)
T 3r8s_M 1 MLQPKRTKFRKMHKGRNRGLA-QGTDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLA 79 (136)
T ss_dssp CCCCSSCSSSSCCCCCCCSCC-SCCSCCSSSEEEEECSCEEEEHHHHHHHHHHHHHTTCSCSEEEECCCCCEEEEECCSS
T ss_pred CCCCCCCCcCcCcCCCCCCcC-CCceEecceEEEEECcCCeECHHHHHHHHHHHHHhhhcCcEEEEEECCCCceEeCchh
Confidence 699999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCceEEEEEEcCCCEEEEEecCCHHHHHHHHHHhhccCCCcEEEEEcC
Q 045554 262 TRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAASKMPIKTQFVMSG 316 (323)
Q Consensus 262 tRMGKGKGkId~WVArVK~GqIIFEI~GVs~~~AkeALk~Aa~KLPiKtkIV~ke 316 (323)
+|||+|||+|+||||+|++|+||||++|++++.|++||++|++|||++|+||.++
T Consensus 80 tRMGkGKG~~~~wva~Vk~G~ilfEi~g~~~~~A~eAlr~a~~KLP~~~kiv~~~ 134 (136)
T 3r8s_M 80 VRMGKGKGNVEYWVALIQPGKVLYEMDGVPEELAREAFKLAAAKLPIKTTFVTKT 134 (136)
T ss_dssp CCSCSSCCEEEEEEEEECTTCEEEEEESSCHHHHHHHHHHHHTTCSSCEEEEECC
T ss_pred ccCCCCCCCCCEEEEEECCCCEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 9999999999999999999999999999999999999999999999999999875
No 2
>2zjr_J 50S ribosomal protein L16; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.41.4.2 PDB: 1sm1_K* 2zjp_J* 2zjq_J 1nkw_K 3cf5_J* 3dll_J* 3pio_J* 1njm_K* 1nwx_K* 1njp_K* 1xbp_K* 1y69_K 1nwy_K* 3pip_J* 1pnu_K 1pny_K 1vor_N 1vou_N 1vow_N 1voy_N ...
Probab=100.00 E-value=2e-53 Score=364.98 Aligned_cols=137 Identities=55% Similarity=0.989 Sum_probs=130.3
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCCCCceeEeeceEEEEecCceecHHHHHHHHHHHHhhhccCceEEEEeCCCCceecCCc
Q 045554 181 LLAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGKIWVRIFPDKPVTARPA 260 (323)
Q Consensus 181 MML~PKktKyrK~~KGRikG~s~~g~~L~fG~yGLkAlE~GrITa~QLEAAR~aInR~LKK~gklWIRVfP~~PVTKKPa 260 (323)
|||+||+|||||+||||++|.+.++++|.||+|||+++|+++||++||||||++|+|+|+++|++|||+|||+|||+||+
T Consensus 1 mml~Pkr~k~rK~~kgr~~g~~~~g~~l~fG~~gL~a~e~~~it~~qiEAaR~ai~R~lkr~gk~wirv~P~~pvt~Kp~ 80 (142)
T 2zjr_J 1 MMLLPKRTKFRKQFRGRMTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHFRRGGKIYIRIFPDKPVTKKPA 80 (142)
T ss_dssp -----CCCSSCCCCCCCCCCSCSSCCSSSSSSCEEEECSCBCCBHHHHHHHHHHHHHHCSSCCCCCCCCCCCCEECCCSS
T ss_pred CCCCCCcCccccCCCCCcCCcccCCcceecceEEEEECcCCeECHHHHHHHHHHHHHHhhhCcEEEEEeCCCcceEcCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCceEEEEEEcCCCEEEEEecCCHHHHHHHHHHhhccCCCcEEEEEcCC
Q 045554 261 ETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAASKMPIKTQFVMSGT 317 (323)
Q Consensus 261 EtRMGKGKGkId~WVArVK~GqIIFEI~GVs~~~AkeALk~Aa~KLPiKtkIV~ke~ 317 (323)
|+|||+|||+|+||||+|++|+||||++|++++.|++||++|++|||++|+||.+++
T Consensus 81 e~RMG~GKG~~~~wva~Vk~G~ilfEi~gv~~~~A~eAlr~A~~KLP~~~kiv~~~~ 137 (142)
T 2zjr_J 81 ETRMGKGKGAVEYWVSVVKPGRVMFEVAGVTEEQAKEAFRLAGHKLPIQTKMVKREV 137 (142)
T ss_dssp SCCCSSSCCTTSEEBCCBCTTEEEECCCSSCSTTTTTHHHHHHHTCSSCEEEECSCC
T ss_pred cccccccCCCCCEEEEEECCCCEEEEEeCCCHHHHHHHHHHHHhhCCCcEEEEEecc
Confidence 999999999999999999999999999999999999999999999999999998864
No 3
>3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=100.00 E-value=6.4e-53 Score=359.08 Aligned_cols=134 Identities=77% Similarity=1.295 Sum_probs=132.1
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCceeEeeceEEEEecCceecHHHHHHHHHHHHhhhccCceEEEEeCCCCceecCCcc
Q 045554 182 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGKIWVRIFPDKPVTARPAE 261 (323)
Q Consensus 182 ML~PKktKyrK~~KGRikG~s~~g~~L~fG~yGLkAlE~GrITa~QLEAAR~aInR~LKK~gklWIRVfP~~PVTKKPaE 261 (323)
||+||+|||||+||||++|.+.++++|.||+|||+++|+++||++||||||++|+|+|+++|++|||+|||+|||+||+|
T Consensus 1 ml~Pkr~k~rK~~kgr~~g~~~~g~~l~fG~~gL~a~e~~~it~~qiEaaR~ai~R~lk~~~k~wirv~P~~pvt~k~~e 80 (135)
T 3bbo_O 1 MLSPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAE 80 (135)
T ss_dssp CCCCCCCCCCCCCCCCCCCTTSCCCCCCSSSEEEEESSCCCCCHHHHHHHHHHHHHTTCSSSCCCCCCCCCSCCCCCCSS
T ss_pred CCCCCcCccccCcCCCCCCccCCCCEEeeceEEEEECcCCccCHHHHHHHHHHHHHHhhhCcEEEEEeCCCcccEecccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCceEEEEEEcCCCEEEEEecCCHHHHHHHHHHhhccCCCcEEEEEc
Q 045554 262 TRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAASKMPIKTQFVMS 315 (323)
Q Consensus 262 tRMGKGKGkId~WVArVK~GqIIFEI~GVs~~~AkeALk~Aa~KLPiKtkIV~k 315 (323)
+|||+|||+|+||||+|++|+||||++|++++.|++||++|++|||++|+||.+
T Consensus 81 ~RMG~GKG~~~~wva~Vk~G~ilfEi~gv~~~~A~eAlr~a~~KLP~~~kiv~~ 134 (135)
T 3bbo_O 81 TRMGSGKGSPEYWVAVVKPGRILYEISGVAENIARRAVAIAASKMPIRTQFIIS 134 (135)
T ss_dssp CCSSCCCSCSSCCCCCCCTTCEEEEECSSCTTHHHHHHHHHHHHCSSCEEEECC
T ss_pred ccccccCCCceEEEEEECCCCEEEEEecCCHHHHHHHHHHHHhhCCCcEEEEec
Confidence 999999999999999999999999999999999999999999999999999964
No 4
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=100.00 E-value=5.4e-44 Score=297.95 Aligned_cols=115 Identities=25% Similarity=0.414 Sum_probs=111.4
Q ss_pred CCCCCCCCCceeEeeceEEEEecCceecHHHHHHHHHHHHhhh--ccCceEEEEeCCCCceecCCcccccCCCCCCceEE
Q 045554 197 RMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNV--KRGGKIWVRIFPDKPVTARPAETRMGSGKGSHAYW 274 (323)
Q Consensus 197 RikG~s~~g~~L~fG~yGLkAlE~GrITa~QLEAAR~aInR~L--KK~gklWIRVfP~~PVTKKPaEtRMGKGKGkId~W 274 (323)
+++|.+.++++|.||+|||+++|+++||++||||||++|+|+| +++|++|||+|||+|||+||+|+|||+|||+|++|
T Consensus 1 ~~~g~~~~g~~l~fG~~gL~a~e~~~it~~qiEaaR~ai~r~l~~k~~~~~wirv~P~~pvt~k~~e~RMG~GKG~~~~w 80 (118)
T 2ftc_I 1 DIRGPSTEATEFTEGNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFAIWRVPAPFKPITRKSVGHRMGGGKGAIDHY 80 (118)
T ss_pred CccccccCCCeEeeeeEEEEECcCCccCHHHHHHHHHHHHheeeccCCeEEEEEECCCcccCcCchhcccccCCCCccEE
Confidence 3578899999999999999999999999999999999999999 67899999999999999999999999999999999
Q ss_pred EEEEcCCCEEEEEec-CCHHHHHHHHHHhhccCCCcEE
Q 045554 275 AAVVTPGKIIFEMSG-VPENIARKAISIAASKMPIKTQ 311 (323)
Q Consensus 275 VArVK~GqIIFEI~G-Vs~~~AkeALk~Aa~KLPiKtk 311 (323)
||+|++|+||||++| ++++.|++||++|++|||++|+
T Consensus 81 va~Vk~G~ilfEi~g~~~~~~a~eAlr~a~~KlP~~~~ 118 (118)
T 2ftc_I 81 VTPVKAGRLVVEMGGRCEFEEVQGFLDQVAHKLPFAAK 118 (118)
T ss_pred EEEECCCCEEEEEeccCCHHHHHHHHHHHHhhCCCCCC
Confidence 999999999999999 9999999999999999999984
No 5
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ...
Probab=100.00 E-value=2.3e-36 Score=263.50 Aligned_cols=103 Identities=21% Similarity=0.110 Sum_probs=99.5
Q ss_pred eEEEEecCceecHHHHHHHHHHHHhhhccC-c----eEEEEeCCCCceecCCcccccCCCCCCceEEEEEEcCCCEEEEE
Q 045554 213 YALQALEPAWITARQIEAGRRAMVRNVKRG-G----KIWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEM 287 (323)
Q Consensus 213 yGLkAlE~GrITa~QLEAAR~aInR~LKK~-g----klWIRVfP~~PVTKKPaEtRMGKGKGkId~WVArVK~GqIIFEI 287 (323)
.||+++|+++||++||||||+++||+|+|. | ++|||+|||+|||+|| |+|||+|||++++|||+|++|+||||+
T Consensus 46 ~~L~a~E~~~Its~qIEAaRia~nR~lkr~~Gk~~fklwIRifP~~~it~kp-etrMg~gkG~p~~wvArVk~G~ilfei 124 (157)
T 1ffk_F 46 VENVVEKPVQIRHNALEAARNAANRFVQNSGAAANYKFRIRKFPFHVIREQD-GDGMRAPFGKSVGTAARSHGANHDFIA 124 (157)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHHhhcCCcccEEEEEECCCeeeEecc-cccccCCCCCccEEEEEEcCCCEEEEE
Confidence 399999999999999999999999999986 5 8999999999999999 999999999999999999999999999
Q ss_pred ecCCHHHHHHHHHHhhccCCCcEEEEEcC
Q 045554 288 SGVPENIARKAISIAASKMPIKTQFVMSG 316 (323)
Q Consensus 288 ~GVs~~~AkeALk~Aa~KLPiKtkIV~ke 316 (323)
.|++++.|+|||++|++|||++|+||..+
T Consensus 125 ~gv~~~~A~eAlr~A~~KlP~ktkiv~~~ 153 (157)
T 1ffk_F 125 WVNPDPAVEFAWRRAYMKVTPTVNIDSSP 153 (157)
T ss_pred eccCHHHHHHHHHHHHhhCCCcEEEEEec
Confidence 99999999999999999999999999754
No 6
>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1
Probab=100.00 E-value=3.7e-35 Score=254.68 Aligned_cols=104 Identities=21% Similarity=0.236 Sum_probs=80.1
Q ss_pred eEEEEecCceecHHHHHHHHHHHHhhhccC-c----eEEEEeCCCCce------ecCCcc---cccCCCCCCceEEEEEE
Q 045554 213 YALQALEPAWITARQIEAGRRAMVRNVKRG-G----KIWVRIFPDKPV------TARPAE---TRMGSGKGSHAYWAAVV 278 (323)
Q Consensus 213 yGLkAlE~GrITa~QLEAAR~aInR~LKK~-g----klWIRVfP~~PV------TKKPaE---tRMGKGKGkId~WVArV 278 (323)
.||+++|+++||++||||||+++||+|+|. | ++|||+|||+|+ |+||++ +|||+|||+|++|||+|
T Consensus 19 ~~L~a~E~~~Its~qIEAaRia~~R~lkr~~Gk~~~~iwIRifP~~~ir~nkmlT~kgadRlq~gMg~gkG~p~~wvArV 98 (151)
T 2pa2_A 19 GHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARV 98 (151)
T ss_dssp EEEEECSCEEEEHHHHHHHHHHHHHHHHHHHCTTSEEEEECCSCC-----------------------------CCEEEE
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHhhhcCCcCcEEEEEECCCeeEeecccccccchhhhhcccccCCCCccEEEEEE
Confidence 489999999999999999999999999984 4 999999999999 999999 99999999999999999
Q ss_pred cCCCEEEEEec--CCHHHHHHHHHHhhccCCCcEEEEEcC
Q 045554 279 TPGKIIFEMSG--VPENIARKAISIAASKMPIKTQFVMSG 316 (323)
Q Consensus 279 K~GqIIFEI~G--Vs~~~AkeALk~Aa~KLPiKtkIV~ke 316 (323)
++|+||||+.+ ++++.|+|||++|++|||++|+||..+
T Consensus 99 k~G~ilfei~~~~v~~~~A~eAlr~A~~KlP~ktkiv~~~ 138 (151)
T 2pa2_A 99 HIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISK 138 (151)
T ss_dssp CTTBEEEEEEECGGGHHHHHHHHHHHGGGSSSCEEEEEES
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEEec
Confidence 99999999999 999999999999999999999999763
No 7
>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H* 1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H* 1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H* 2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ...
Probab=100.00 E-value=2.4e-34 Score=253.72 Aligned_cols=104 Identities=22% Similarity=0.220 Sum_probs=94.0
Q ss_pred eEEEEecCceecHHHHHHHHHHHHhhhcc-Cce-----EEEEeCCCCce------ecCCcc---cccCCCCCCceEEEEE
Q 045554 213 YALQALEPAWITARQIEAGRRAMVRNVKR-GGK-----IWVRIFPDKPV------TARPAE---TRMGSGKGSHAYWAAV 277 (323)
Q Consensus 213 yGLkAlE~GrITa~QLEAAR~aInR~LKK-~gk-----lWIRVfP~~PV------TKKPaE---tRMGKGKGkId~WVAr 277 (323)
.||+++|+++||++||||||++++|+|+| .|+ +|||+|||+|| |+||+| +|||+|||++++|||+
T Consensus 47 ~~L~a~E~~~Its~qIEAaRia~~R~lkk~~Gk~~~f~iwIRifP~~~ir~nkm~T~kgAdRlq~rMg~gkG~p~~wvAr 126 (171)
T 1vq8_H 47 ISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGKIVGTAAR 126 (171)
T ss_dssp EEEEESSCEEEEHHHHHHHHHHHHHHHHHHHCTTCSCEEEECCCCCEEEEECC-----------CCSTTCCCEEEEEEEE
T ss_pred EEEEECcccccCHHHHHHHHHHHHHHhHHhcCCCCCcEEEEEEcCCeeEeccccccccchhhhhccccccCCCCcEEEEE
Confidence 39999999999999999999999999997 556 99999999998 899999 9999999999999999
Q ss_pred EcCCCEEEEEec--CCHHHHHHHHHHhhccCCCcEEEEEcC
Q 045554 278 VTPGKIIFEMSG--VPENIARKAISIAASKMPIKTQFVMSG 316 (323)
Q Consensus 278 VK~GqIIFEI~G--Vs~~~AkeALk~Aa~KLPiKtkIV~ke 316 (323)
|++|+||||+.+ ++++.|+|||++|++|||++|+||..+
T Consensus 127 Vk~G~ilfei~~~~v~~~~A~eAlr~A~~KLP~ktkiv~~~ 167 (171)
T 1vq8_H 127 VQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIDSSP 167 (171)
T ss_dssp ECTTCEEEEEEECTTTHHHHHHHHHHHGGGSSSCEEEEECS
T ss_pred ECCCCEEEEEECcCCCHHHHHHHHHHHHhhCCCcEEEEEec
Confidence 999999999999 999999999999999999999999754
No 8
>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.2e-33 Score=256.33 Aligned_cols=104 Identities=20% Similarity=0.194 Sum_probs=99.8
Q ss_pred eEEEEecCceecHHHHHHHHHHHHhhhccC-----ceEEEEeCCCCcee------cCCcc---cccCCCCCCceEEEEEE
Q 045554 213 YALQALEPAWITARQIEAGRRAMVRNVKRG-----GKIWVRIFPDKPVT------ARPAE---TRMGSGKGSHAYWAAVV 278 (323)
Q Consensus 213 yGLkAlE~GrITa~QLEAAR~aInR~LKK~-----gklWIRVfP~~PVT------KKPaE---tRMGKGKGkId~WVArV 278 (323)
+||+|+|+++||++||||||+++||+|+|. |++|||+|||+||| +||++ +|||+|||+|++|||+|
T Consensus 50 ~gL~a~E~~~Its~qIEAARia~nR~lkr~~Gk~~fklwIRifP~~~it~nkmls~kgAdRlqtgMg~gkGkp~~wvArV 129 (214)
T 2zkr_h 50 GHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVAKV 129 (214)
T ss_dssp EEEEESSCEEEEHHHHHHHHHHHHHHHHHHHCTTCCEEEECCCCCEEEEECTTTCCSSCSSTTSSSTTCCCEEEEEEEEE
T ss_pred EEEEECcccccCHHHHHHHHHHHHHHHhhccCCcCcEEEEEECCCceeecccccccCCchhhcccccCCCCCCcEEEEEE
Confidence 699999999999999999999999999983 48999999999999 88998 99999999999999999
Q ss_pred cCCCEEEEEec--CCHHHHHHHHHHhhccCCCcEEEEEcC
Q 045554 279 TPGKIIFEMSG--VPENIARKAISIAASKMPIKTQFVMSG 316 (323)
Q Consensus 279 K~GqIIFEI~G--Vs~~~AkeALk~Aa~KLPiKtkIV~ke 316 (323)
++|+||||+.+ ++++.|+|||++|++|||++|+||..+
T Consensus 130 kpGqilfEi~~~~v~~~~A~eALr~A~~KLP~ktkiv~~~ 169 (214)
T 2zkr_h 130 HIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISK 169 (214)
T ss_dssp CTTCEEEEEEECSTTHHHHHHHHHHHHHTSSSCEEEEECC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHhhCCCcEEEEEec
Confidence 99999999999 999999999999999999999999765
No 9
>3j21_N 50S ribosomal protein L10E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.97 E-value=1.4e-32 Score=244.28 Aligned_cols=105 Identities=22% Similarity=0.265 Sum_probs=98.3
Q ss_pred eEEEEecCceecHHHHHHHHHHHHhhhcc-Cc----eEEEEeCCCCceecCC---------cccccCCCCCCceEEEEEE
Q 045554 213 YALQALEPAWITARQIEAGRRAMVRNVKR-GG----KIWVRIFPDKPVTARP---------AETRMGSGKGSHAYWAAVV 278 (323)
Q Consensus 213 yGLkAlE~GrITa~QLEAAR~aInR~LKK-~g----klWIRVfP~~PVTKKP---------aEtRMGKGKGkId~WVArV 278 (323)
..|+++|.+|||++||||||+++||+|+| .| ++|||+|||+|+|+|+ +++|||+|||++++|||+|
T Consensus 47 ~~L~a~E~~qIss~qiEAARia~nRyl~r~~Gk~~fhl~IRifP~~vir~nkmls~agAdRl~~gM~~~kGkp~gwvArV 126 (181)
T 3j21_N 47 VSLHTAEPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARL 126 (181)
T ss_dssp EEEEECSCEEEEHHHHHHHHHHHHHHHHHHHCTTSCEEECCCCCCCCCCCCCCCCCCTTCCSCCSSSSCSCCCCCCEEEE
T ss_pred EEEEEcccccccHHHHHHHHHHHHHHHHHhcCCccceEEEEECCCceeeecccccccchhhhccccccccCCcceEEEEE
Confidence 48999999999999999999999999998 44 5999999999999988 3789999999999999999
Q ss_pred cCCCEEEEEec--CCHHHHHHHHHHhhccCCCcE--EEEEcCC
Q 045554 279 TPGKIIFEMSG--VPENIARKAISIAASKMPIKT--QFVMSGT 317 (323)
Q Consensus 279 K~GqIIFEI~G--Vs~~~AkeALk~Aa~KLPiKt--kIV~ke~ 317 (323)
++|++|||+.+ ++++.|+|||++|++|||++| +|+..+.
T Consensus 127 k~Gqilfei~~~~~~~~~A~eAlr~A~~KlP~~t~~kiv~~~~ 169 (181)
T 3j21_N 127 KKDQKILSIRVNRQHLKFAIEGARRAAMKFPCKCYYRIYDKEG 169 (181)
T ss_dssp CSSEEEEEEEECSTTHHHHHHHHHHHHHSSSSCCSSCEEECCC
T ss_pred cCCCEEEEEEecCCCHHHHHHHHHHHhccCCCCeeeEEEEecc
Confidence 99999999999 679999999999999999999 9997754
No 10
>4a17_H RPL10, 60S ribosomal protein L10; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_H 4a1c_H 4a1e_H
Probab=99.97 E-value=6.5e-32 Score=245.21 Aligned_cols=104 Identities=25% Similarity=0.244 Sum_probs=96.9
Q ss_pred eEEEEecCceecHHHHHHHHHHHHhhhcc-Cce----EEEEeCCCCceecCCc---------ccccCCCCCCceEEEEEE
Q 045554 213 YALQALEPAWITARQIEAGRRAMVRNVKR-GGK----IWVRIFPDKPVTARPA---------ETRMGSGKGSHAYWAAVV 278 (323)
Q Consensus 213 yGLkAlE~GrITa~QLEAAR~aInR~LKK-~gk----lWIRVfP~~PVTKKPa---------EtRMGKGKGkId~WVArV 278 (323)
..|+++|.++||++||||||+++||+|+| .|+ +|||+|||+|+|++++ ++|||+|||++++|||+|
T Consensus 50 ~~L~a~E~~qIss~qIEAARia~nRyl~r~~GK~~fhl~IRifP~~vir~nkmls~agAdRl~tgM~~akGkp~gwvArV 129 (215)
T 4a17_H 50 VHIVSDEKEQITSEALEAARIAANKNLIKFISKDAFHLRCRVHPWHVLRINKMLSCAGADRLQSGMRGAFGKALGKAARV 129 (215)
T ss_dssp EEEEECSCEEEEHHHHHHHHHHHHHHHHHHSCGGGCEEEECCCCCEEEEECC-----------CTTSCCCCEEEEEEEEE
T ss_pred EEEEECccccCcHHHHHHHHHHHHHHHHHhcCCccceEEEEECCCceeeecccccccchhhhhccccCCCCCCCeEEEEE
Confidence 47999999999999999999999999998 555 9999999999999997 899999999999999999
Q ss_pred cCCCEEEEEec--CCHHHHHHHHHHhhccCCCcEEEEEcC
Q 045554 279 TPGKIIFEMSG--VPENIARKAISIAASKMPIKTQFVMSG 316 (323)
Q Consensus 279 K~GqIIFEI~G--Vs~~~AkeALk~Aa~KLPiKtkIV~ke 316 (323)
++|+||||+.+ ++++.|+|||++|++|||++|+|+..+
T Consensus 130 k~Gqilfei~g~~~~~~~A~eALr~A~~KlP~~tkiv~~~ 169 (215)
T 4a17_H 130 DIGSILFSVRVKEPHVKYAIDALTRAKAKFPGRQKVVTSQ 169 (215)
T ss_dssp CTTCEEEEEEECGGGHHHHHHHHHHHGGGSSSCEEEEEES
T ss_pred cCCCEEEEEEecCCCHHHHHHHHHHHhhhCCCceEEEEcc
Confidence 99999999999 569999999999999999999999764
No 11
>3j0l_J Ribosomal protein L10; mammalia, translation, elongation cycle, tRNA, ribosome; 9.80A {Oryctolagus cuniculus} PDB: 3j0q_J 3izc_I 3izs_I 3o58_J 3o5h_J 3u5e_I 3u5i_I 4b6a_I
Probab=99.97 E-value=8.4e-32 Score=245.02 Aligned_cols=104 Identities=21% Similarity=0.292 Sum_probs=96.7
Q ss_pred eEEEEecCceecHHHHHHHHHHHHhhhcc-Cce----EEEEeCCCCceecCCc---------ccccCCCCCCceEEEEEE
Q 045554 213 YALQALEPAWITARQIEAGRRAMVRNVKR-GGK----IWVRIFPDKPVTARPA---------ETRMGSGKGSHAYWAAVV 278 (323)
Q Consensus 213 yGLkAlE~GrITa~QLEAAR~aInR~LKK-~gk----lWIRVfP~~PVTKKPa---------EtRMGKGKGkId~WVArV 278 (323)
..|+++|.++||++||||||+++||+|+| .|+ +|||+|||+|+|+|++ ++|||+|||++++|||+|
T Consensus 48 ~~L~a~E~~qIss~qIEAARia~nRyl~r~~GK~~fhlwIRifP~~vir~nkmls~AgAdRl~tgMr~akGkp~gwvArV 127 (219)
T 3j0l_J 48 VHLVSNELEQLSSEALEAARICANKYMTTVSGRDAFHLRVRVHPFHVLRINKMLSCAGADRLQQGMRGAWGKPHGLAARV 127 (219)
T ss_dssp EEEECCSCEEECHHHHHHHHHHHHHHHHHTTCTTTCCBCCCSCCCCEEEECC-----------CCSSCCCCEEEEECEEE
T ss_pred EEEEECccccccHHHHHHHHHHHHHHHHHhcCCccceEEEEECCCceeeecccccccchhhhhccccCCCCCCCeEEEEE
Confidence 48999999999999999999999999998 555 9999999999999997 899999999999999999
Q ss_pred cCCCEEEEEec--CCHHHHHHHHHHhhccCCCcEEEEEcC
Q 045554 279 TPGKIIFEMSG--VPENIARKAISIAASKMPIKTQFVMSG 316 (323)
Q Consensus 279 K~GqIIFEI~G--Vs~~~AkeALk~Aa~KLPiKtkIV~ke 316 (323)
++|+||||+.+ ++++.|+|||++|++|||++|+|+..+
T Consensus 128 k~Gqilfei~g~~~~~~~A~eALr~A~~KLP~~tkiv~~~ 167 (219)
T 3j0l_J 128 DIGQIIFSVRTKDSNKDVVVEGLRRARYKFPGQQKIILSK 167 (219)
T ss_dssp CTTCEESCCCCCGGGHHHHHHHHHHHHHSSSCCCCCEECC
T ss_pred cCCCEEEEEEecCcCHHHHHHHHHHHhhhCCCCeEEEEec
Confidence 99999999999 567999999999999999999998764
No 12
>3iz5_I 60S ribosomal protein L10 (L10E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_I 1s1i_I 3jyw_I
Probab=99.95 E-value=1e-31 Score=244.99 Aligned_cols=104 Identities=20% Similarity=0.228 Sum_probs=97.9
Q ss_pred eEEEEecCceecHHHHHHHHHHHHhhhcc-C----ceEEEEeCCCCceecCCc---------ccccCCCCCCceEEEEEE
Q 045554 213 YALQALEPAWITARQIEAGRRAMVRNVKR-G----GKIWVRIFPDKPVTARPA---------ETRMGSGKGSHAYWAAVV 278 (323)
Q Consensus 213 yGLkAlE~GrITa~QLEAAR~aInR~LKK-~----gklWIRVfP~~PVTKKPa---------EtRMGKGKGkId~WVArV 278 (323)
..|+++|.++||++||||||+++||+|+| . +++|||+|||+|+|++++ ++|||+|||++++|||+|
T Consensus 50 ~~L~a~E~~qIss~qIEAARia~nRyl~r~~GK~~fhlwIRifP~~vir~nkmls~AgAdRl~tGMr~~kGkp~gwvArV 129 (224)
T 3iz5_I 50 VHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV 129 (224)
T ss_dssp SCCCCCTTTSCSCCCCCCSSSSEECCSSCHHHHCCCEEEEEECSCCEEEHHHHHHHHHHHHHHHHHHHCSSSCSCEEEEC
T ss_pred EEEEECccccccHHHHHHHHHHHHHHHHHhcCCccceEEEEeCCCceeeecccccccchhhhhccccCCCCCCCeEEEEE
Confidence 47999999999999999999999999998 4 459999999999999887 899999999999999999
Q ss_pred cCCCEEEEEec--CCHHHHHHHHHHhhccCCCcEEEEEcC
Q 045554 279 TPGKIIFEMSG--VPENIARKAISIAASKMPIKTQFVMSG 316 (323)
Q Consensus 279 K~GqIIFEI~G--Vs~~~AkeALk~Aa~KLPiKtkIV~ke 316 (323)
++|+||||+.+ ++++.|+|||++|++|||++|+|+..+
T Consensus 130 k~Gqilfei~g~~~~~~~A~eALrrA~~KLP~ktkiv~~~ 169 (224)
T 3iz5_I 130 DIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSR 169 (224)
T ss_dssp CCCCSEECCCCCCCCSSCSSSSSSCCCSCCCCCEEEEECC
T ss_pred cCCCEEEEEEecCcCHHHHHHHHHHHhhhCCCceEEEEec
Confidence 99999999999 568999999999999999999999764
No 13
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=21.98 E-value=50 Score=24.15 Aligned_cols=37 Identities=30% Similarity=0.380 Sum_probs=24.8
Q ss_pred EEcCCCEEEEEec--C---CHHHHHHHHHHhhccCCCcEEEEEcCC
Q 045554 277 VVTPGKIIFEMSG--V---PENIARKAISIAASKMPIKTQFVMSGT 317 (323)
Q Consensus 277 rVK~GqIIFEI~G--V---s~~~AkeALk~Aa~KLPiKtkIV~ke~ 317 (323)
++++|++|.+|.| + +.+.+.++++.... +..+.....
T Consensus 39 ~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~----~v~L~v~~~ 80 (88)
T 3e17_A 39 NLHEGDIILKINGTVTENMSLTDARKLIEKSRG----KLQLVVLRD 80 (88)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHHTTT----EEEEEECCC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC----eEEEEEeCC
Confidence 3789999999987 3 45777777776543 444444433
No 14
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=21.57 E-value=50 Score=23.58 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=21.1
Q ss_pred EEcCCCEEEEEecC-----CHHHHHHHHHHhhcc
Q 045554 277 VVTPGKIIFEMSGV-----PENIARKAISIAASK 305 (323)
Q Consensus 277 rVK~GqIIFEI~GV-----s~~~AkeALk~Aa~K 305 (323)
-+++|++|.++.|. +.+.+..+++.....
T Consensus 46 gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~ 79 (87)
T 4e34_A 46 GLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGE 79 (87)
T ss_dssp CCCTTEEEEEETTEECTTCCHHHHHHHHHHCCSE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence 47899999999983 446777777765443
Done!