RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 045554
(323 letters)
>gnl|CDD|176985 CHL00044, rpl16, ribosomal protein L16.
Length = 135
Score = 276 bits (708), Expect = 1e-94
Identities = 101/132 (76%), Positives = 111/132 (84%)
Query: 185 PKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 244
PKR KF KQHRGRM G + RGN ICFGRYALQALEPAWIT+RQIEAGRRA+ R +RGGK
Sbjct: 4 PKRTKFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAITRYARRGGK 63
Query: 245 IWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAAS 304
IW+RIFPDKPVT RPAETRMGSGKGS YW AVV PG+I++EM GV E IAR AI IAA
Sbjct: 64 IWIRIFPDKPVTMRPAETRMGSGKGSPEYWVAVVKPGRILYEMGGVSETIARAAIKIAAY 123
Query: 305 KMPIKTQFVMSG 316
KMPIKTQF++S
Sbjct: 124 KMPIKTQFIISE 135
>gnl|CDD|236411 PRK09203, rplP, 50S ribosomal protein L16; Reviewed.
Length = 138
Score = 249 bits (639), Expect = 3e-84
Identities = 87/134 (64%), Positives = 108/134 (80%), Gaps = 2/134 (1%)
Query: 180 MLLAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNV 239
ML PKR K+ KQH+GR GKA RGN + FG + L+ALEP WITARQIEA R AM R++
Sbjct: 1 MLQ--PKRTKYRKQHKGRNRGKAKRGNTVAFGEFGLKALEPGWITARQIEAARIAMTRHI 58
Query: 240 KRGGKIWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAI 299
KRGGK+W+RIFPDKPVT +PAE RMG GKGS YW AVV PG+I+FE++GV E +AR+A+
Sbjct: 59 KRGGKVWIRIFPDKPVTKKPAEVRMGKGKGSPEYWVAVVKPGRILFEIAGVSEELAREAL 118
Query: 300 SIAASKMPIKTQFV 313
+AA+K+PIKT+FV
Sbjct: 119 RLAAAKLPIKTKFV 132
>gnl|CDD|211627 TIGR01164, rplP_bact, ribosomal protein L16, bacterial/organelle.
This model describes bacterial and organellar ribosomal
protein L16. The homologous protein of the eukaryotic
cytosol is designated L10 [Protein synthesis, Ribosomal
proteins: synthesis and modification].
Length = 126
Score = 219 bits (560), Expect = 2e-72
Identities = 87/124 (70%), Positives = 100/124 (80%)
Query: 185 PKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 244
PKR K+ KQHRGRM GKA RGN + FG Y LQALEP WITARQIEA R AM R VKRGGK
Sbjct: 3 PKRTKYRKQHRGRMKGKAKRGNTVAFGEYGLQALEPGWITARQIEAARVAMTRYVKRGGK 62
Query: 245 IWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAAS 304
+W+RIFPDKP T +P ETRMG GKG+ YW AVV PGKI+FE++GVPE +AR+A +AAS
Sbjct: 63 LWIRIFPDKPYTKKPLETRMGKGKGNPEYWVAVVKPGKILFEIAGVPEEVAREAFRLAAS 122
Query: 305 KMPI 308
K+PI
Sbjct: 123 KLPI 126
>gnl|CDD|215820 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e.
Length = 129
Score = 211 bits (539), Expect = 4e-69
Identities = 75/129 (58%), Positives = 95/129 (73%), Gaps = 1/129 (0%)
Query: 185 PKRIKFPKQHRGRM-TGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGG 243
PKR K+ K +GR+ G A GN + FG Y L+ALEP ITARQIEA R A+ R +KRGG
Sbjct: 1 PKRTKYRKYQKGRLEYGGAVPGNKLAFGDYGLKALEPGRITARQIEAARIAINRYLKRGG 60
Query: 244 KIWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAA 303
K+W+R+FPDKPVT +PAETRMG GKG W A V PG+I+FE+ GV E +A++A+ AA
Sbjct: 61 KLWIRVFPDKPVTKKPAETRMGKGKGKPEGWVARVKPGQILFEIGGVSEEVAKEALRRAA 120
Query: 304 SKMPIKTQF 312
SK+PIKT+
Sbjct: 121 SKLPIKTKI 129
>gnl|CDD|223275 COG0197, RplP, Ribosomal protein L16/L10E [Translation, ribosomal
structure and biogenesis].
Length = 146
Score = 198 bits (506), Expect = 6e-64
Identities = 75/132 (56%), Positives = 96/132 (72%), Gaps = 2/132 (1%)
Query: 184 GPKRIKFPKQHRGRMTGK--ASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKR 241
PKR K+ KQH+GR G A GN + FG Y L ALEP ITARQIEA R A R +KR
Sbjct: 4 QPKRTKYRKQHKGRGPGITIAKGGNKVFFGEYGLVALEPGQITARQIEAARIAANRYLKR 63
Query: 242 GGKIWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISI 301
GG +W+R+FPDKP+T +P E RMG GKG WAA V PG+++FE++GVPE +AR+A+
Sbjct: 64 GGGLWIRVFPDKPLTEKPGEDRMGKGKGKPEGWAARVKPGRVLFEIAGVPEELAREALRR 123
Query: 302 AASKMPIKTQFV 313
AA+K+P+KT+FV
Sbjct: 124 AAAKLPVKTKFV 135
>gnl|CDD|238714 cd01433, Ribosomal_L16_L10e, Ribosomal_L16_L10e: L16 is an
essential protein in the large ribosomal subunit of
bacteria, mitochondria, and chloroplasts. Large subunits
that lack L16 are defective in peptidyl transferase
activity, peptidyl-tRNA hydrolysis activity, association
with the 30S subunit, binding of aminoacyl-tRNA and
interaction with antibiotics. L16 is required for the
function of elongation factor P (EF-P), a protein
involved in peptide bond synthesis through the
stimulation of peptidyl transferase activity by the
ribosome. Mutations in L16 and the adjoining bases of
23S rRNA confer antibiotic resistance in bacteria,
suggesting a role for L16 in the formation of the
antibiotic binding site. The GTPase RbgA (YlqF) is
essential for the assembly of the large subunit, and it
is believed to regulate the incorporation of L16. L10e
is the archaeal and eukaryotic cytosolic homolog of
bacterial L16. L16 and L10e exhibit structural
differences at the N-terminus.
Length = 112
Score = 163 bits (416), Expect = 6e-51
Identities = 62/112 (55%), Positives = 81/112 (72%), Gaps = 2/112 (1%)
Query: 204 RGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKR-GGKIWVRIFPDKPVTARPAET 262
+GN + FG Y L ALEP ITA Q+EA R A+ R +K+ GGK+W+R+FPD PVT +P ET
Sbjct: 1 KGNKLFFGEYGLVALEPGRITAEQLEAARIAINRYLKKKGGKLWIRVFPDHPVTKKPLET 60
Query: 263 RMGSGKGSHAYWAAVVTPGKIIFEMSGVP-ENIARKAISIAASKMPIKTQFV 313
RMG GKG W A V PG+I+FE+ GVP E +A++A+ AA K+PIKT+ V
Sbjct: 61 RMGKGKGKPEGWVARVKPGQILFEVRGVPEEEVAKEALRRAAKKLPIKTKIV 112
>gnl|CDD|235252 PRK04199, rpl10e, 50S ribosomal protein L10e; Reviewed.
Length = 172
Score = 40.6 bits (96), Expect = 3e-04
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 18/116 (15%)
Query: 215 LQALEPAWITARQIEAGR----RAMVRNVKRGG-KIWVRIFP------DKPVTARPAETR 263
L EP I +EA R + + + V R + +R++P +K T A+ R
Sbjct: 49 LVVEEPCQIRHNALEAARIAANKYLTKTVGRSNYHLKIRVYPHHVLRENKMATGAGAD-R 107
Query: 264 MGSGK----GSHAYWAAVVTPGKIIFEMSGVPENI--ARKAISIAASKMPIKTQFV 313
+ G G AA V G+ IF + PE++ A++A+ AA K+P + V
Sbjct: 108 VSDGMRLAFGKPVGTAARVEKGQKIFTVRVNPEHLEAAKEALRRAAMKLPTPCRIV 163
>gnl|CDD|237017 PRK11904, PRK11904, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1038
Score = 31.3 bits (72), Expect = 0.71
Identities = 16/50 (32%), Positives = 17/50 (34%), Gaps = 10/50 (20%)
Query: 221 AWITARQIEAGRRAMVRNVKRGGKIW--------VRIFPDKPVTARPAET 262
W+ GRR VR VK G W P PV R A T
Sbjct: 336 DWLADLARRQGRRIPVRLVK--GAYWDSEIKRAQELGLPGYPVFTRKAAT 383
>gnl|CDD|202697 pfam03597, CcoS, Cytochrome oxidase maturation protein cbb3-type.
Length = 45
Score = 27.4 bits (62), Expect = 1.3
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 116 IGAALFFVLVGLFLFL--LSSGQ 136
I +L +GL FL + SGQ
Sbjct: 7 IPISLLLGAIGLAAFLWAVKSGQ 29
>gnl|CDD|234698 PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.
Length = 297
Score = 30.1 bits (69), Expect = 1.3
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 197 RMTGKASRGNLICFGRYALQALEPAWITAR-QIEAGRRAMVRNVKRGGKIWVRIF 250
R+ GK ++ + GR A +ALE A++ R A+ RGG++ R+
Sbjct: 171 RVLGKGNKERTVPLGRAAREALE-AYLALRPLFLPDDDALFLG-ARGGRLSPRVV 223
>gnl|CDD|226105 COG3576, COG3576, Predicted flavin-nucleotide-binding protein
structurally related to pyridoxine 5'-phosphate oxidase
[General function prediction only].
Length = 173
Score = 29.3 bits (66), Expect = 1.6
Identities = 17/77 (22%), Positives = 24/77 (31%), Gaps = 7/77 (9%)
Query: 221 AWITARQIEAGRRAMVRNVKRGG-------KIWVRIFPDKPVTARPAETRMGSGKGSHAY 273
A T R + + +RN+ R K RI V + G
Sbjct: 80 AGKTDRNLGNNPKITLRNILRNRRALLFLVKGTARIQGRGAVYDAVVKLAAFLMDGLPPK 139
Query: 274 WAAVVTPGKIIFEMSGV 290
A VVT ++ F S
Sbjct: 140 SAIVVTVEEVYFLASRA 156
>gnl|CDD|224181 COG1261, FlgA, Flagellar basal body P-ring biosynthesis protein
[Cell motility and secretion / Posttranslational
modification, protein turnover, chaperones].
Length = 220
Score = 29.2 bits (66), Expect = 2.5
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 195 RGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRR 233
G + AS NL F R A+QA + AR I G +
Sbjct: 71 WGNVNVLASCSNLPRFVRVAVQAPGEVVVAARTIYRGEK 109
>gnl|CDD|227307 COG4973, XerC, Site-specific recombinase XerC [DNA replication,
recombination, and repair].
Length = 299
Score = 29.3 bits (66), Expect = 2.5
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 197 RMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGKIWVRIFPDKPVT 256
R+ GK ++ + GR A++ALE W+ R + A + + G +I R +
Sbjct: 170 RVMGKGNKERRVPVGRKAVEALE-HWLALRGLFASEDDALFLSRLGKRISAR-----AIQ 223
Query: 257 ARPAETRMGSGKGSH 271
R A+ + G SH
Sbjct: 224 KRLAQWGIKQGLNSH 238
>gnl|CDD|206339 pfam14171, SpoIISA_toxin, Toxin SpoIISA, type II toxin-antitoxin
system. SpoIISA is a toxin which causes lysis of
vegetatively growing cells. It forms part of a type II
toxin-antitoxin system, where the SpoIISB protein,
pfam14185, acts as an antitoxin. It is a transmembrane
protein, with a cytoplasmic domain accounting for
approximately two-thirds of the protein. The structure
of the cytoplasmic domain resembles that of the GAF
domains, Pfam: PF01590. SpoIISB binds to the cytoplasmic
domain of SpoIISA with high affinity.
Length = 240
Score = 28.9 bits (65), Expect = 3.0
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 12/81 (14%)
Query: 99 IFTNPNQNPNPNRLQVSIGAALFFVLVGLFLFLLSSGQIAGLQQKVLDLSHLLTETTKSL 158
IFT+ + L V A+FF + F+FL + G + D L ++L
Sbjct: 59 IFTDWK-----HYLIV----AVFFAFIDAFIFLTPYIKKLGSNELETDTEKTLEANNETL 109
Query: 159 FLGHDTQRWISDYSPVTMSMS 179
H + ++ + +
Sbjct: 110 ---HMYLNRLKNFQYLLKNEP 127
>gnl|CDD|233788 TIGR02224, recomb_XerC, tyrosine recombinase XerC. The phage
integrase family describes a number of recombinases with
tyrosine active sites that transiently bind covalently
to DNA. Many are associated with mobile DNA elements,
including phage, transposons, and phase variation loci.
This model represents XerC, one of two closely related
chromosomal proteins along with XerD (TIGR02225). XerC
and XerD are site-specific recombinases which help
resolve chromosome dimers to monomers for cell division
after DNA replication. In species with a large
chromosome and homologs of XerC on other replicons, the
chomosomal copy was preferred for building this model.
This model does not detect all XerC, as some apparent
XerC examples score in the gray zone between trusted
(450) and noise (410) cutoffs, along with some XerD
examples. XerC and XerD interact with cell division
protein FtsK [DNA metabolism, DNA replication,
recombination, and repair].
Length = 295
Score = 29.1 bits (66), Expect = 3.0
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Query: 197 RMTGKASRGNLICFGRYALQALEPAWITARQIE----AGRRAMVRNVKRGGKIWVR 248
R+ GK ++ ++ FG YA AL+ A++ AR+ G+ A+ N +RGG++ R
Sbjct: 164 RVRGKGNKERIVPFGPYARDALQ-AYLEARRFPLLASEGQDALFLN-RRGGRLTPR 217
>gnl|CDD|176176 cd08487, PBP2_BlaA, The C-terminal substrate-binding domain of
LysR-type trnascriptional regulator BlaA which involved
in control of the beta-lactamase gene expression;
contains the type 2 periplasmic binding fold. This CD
represents the C-terminal substrate binding domain of
LysR-type transcriptional regulator, BlaA, that involved
in control of the expression of beta-lactamase genes,
blaA and blaB. Beta-lactamases are responsible for
bacterial resistance to beta-lactam antibiotics such as
penicillins. The blaA gene is located just upstream of
blaB in the opposite direction and regulates the
expression of the blaB. BlaA also negatively
auto-regulates the expression of its own gene, blaA.
BlaA (a constitutive class A penicllinase) belongs to
the LysR family of transcriptional regulators, whereas
BlaB (an inducible class C cephalosporinase or AmpC) can
be referred to as a penicillin binding protein but it
does not act as a beta-lactamase. The topology of this
substrate-binding domain is most similar to that of the
type 2 periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis.
Length = 189
Score = 28.3 bits (63), Expect = 4.7
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 217 ALEPAWITARQIEAGRRAMVRNVK---RGGKIWVRIFPDKPVTA 257
AL PA + +R+IE G+ +V+ K G W+ KP+T
Sbjct: 139 ALAPAKMFSREIENGQ--LVQPFKIEVETGSYWLTWLKSKPMTP 180
>gnl|CDD|215883 pfam00374, NiFeSe_Hases, Nickel-dependent hydrogenase.
Length = 502
Score = 28.6 bits (64), Expect = 5.1
Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 12/114 (10%)
Query: 183 AGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRG 242
G +R+K + GR A +ALE A +V N+K G
Sbjct: 345 KGRERVKEQVDRVLKKLNLPLAALFSTLGRTAARALECKLAADYMQVA-LDKLVTNIKAG 403
Query: 243 GKIWVRIFPDKPVTARPAETRMGSG-----KGSHAYWAAVVTPGKIIFEMSGVP 291
+ +P P E + G G +G+ ++W + GKI + VP
Sbjct: 404 DSATANVEKWEP----PKEAK-GVGFTEAPRGALSHW-IRIKDGKIENYQAVVP 451
>gnl|CDD|219122 pfam06650, DUF1162, Protein of unknown function (DUF1162). This
family represents a conserved region within several
hypothetical eukaryotic proteins. Family members might
be vacuolar protein sorting related-proteins.
Length = 271
Score = 28.4 bits (64), Expect = 5.2
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 9/50 (18%)
Query: 77 SNRDLKVQQS---------VGVMMGGRSFPLIFTNPNQNPNPNRLQVSIG 117
+ L+ + S PL+F+ + + NR Q+ IG
Sbjct: 15 TGLPLQYRSDDNKNKAAGQPEHEGARYSIPLMFSFDDNDDRKNRAQLRIG 64
>gnl|CDD|238916 cd01941, YeiC_kinase_like, YeiC-like sugar kinase. Found in
eukaryotes and bacteria, YeiC-like kinase is part of the
ribokinase/pfkB sugar kinase superfamily. Its
oligomerization state is unknown at this time.
Length = 288
Score = 28.4 bits (64), Expect = 5.4
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 266 SGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAASKMPIKTQFV 313
GK S + PG + GV NIA +++ + +
Sbjct: 13 RGKVSGSLVPGTSNPGHVKQSPGGVGRNIAE-----NLARLGVSVALL 55
>gnl|CDD|237235 PRK12857, PRK12857, fructose-1,6-bisphosphate aldolase; Reviewed.
Length = 284
Score = 28.2 bits (63), Expect = 5.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 288 SGVPENIARKAISIAASKMPIKT 310
SGVP+ RKAIS+ K+ I T
Sbjct: 211 SGVPDEAIRKAISLGVRKVNIDT 233
>gnl|CDD|224145 COG1224, TIP49, DNA helicase TIP49, TBP-interacting protein
[Transcription].
Length = 450
Score = 28.5 bits (64), Expect = 6.0
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 212 RYALQALEPAWITARQIEAGRRAMVRNVKR 241
RYA+Q L PA I A + +R V +V+R
Sbjct: 399 RYAVQLLTPASIIA-KRRGSKRVEVEDVER 427
>gnl|CDD|177986 PLN02353, PLN02353, probable UDP-glucose 6-dehydrogenase.
Length = 473
Score = 28.1 bits (63), Expect = 6.8
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 9/42 (21%)
Query: 259 PAETR-MGSGKGSH-AYW-------AAVVTPGKIIFEMSGVP 291
P +TR +G+GK + YW A V KI+ E S VP
Sbjct: 89 PTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVP 130
>gnl|CDD|183710 PRK12737, gatY, tagatose-bisphosphate aldolase; Reviewed.
Length = 284
Score = 27.7 bits (62), Expect = 7.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 288 SGVPENIARKAISIAASKMPIKTQ 311
SGVP+ +KAIS+ K+ + T+
Sbjct: 211 SGVPDEDVKKAISLGICKVNVATE 234
>gnl|CDD|223269 COG0191, Fba, Fructose/tagatose bisphosphate aldolase [Carbohydrate
transport and metabolism].
Length = 286
Score = 27.5 bits (62), Expect = 8.9
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 288 SGVPENIARKAISIAASKMPIKT 310
SG+P+ R+AI + +K+ I T
Sbjct: 213 SGIPDEEIREAIKLGVAKVNIDT 235
>gnl|CDD|233789 TIGR02225, recomb_XerD, tyrosine recombinase XerD. The phage
integrase family describes a number of recombinases with
tyrosine active sites that transiently bind covalently
to DNA. Many are associated with mobile DNA elements,
including phage, transposons, and phase variation loci.
This model represents XerD, one of two closely related
chromosomal proteins along with XerC (TIGR02224). XerC
and XerD are site-specific recombinases which help
resolve chromosome dimers to monomers for cell division
after DNA replication. In species with a large
chromosome and with homologs of XerD on other replicons,
the chomosomal copy was preferred for building this
model. This model does not detect all XerD, as some
apparent XerD examples score below the trusted and noise
cutoff scores. XerC and XerD interact with cell division
protein FtsK [DNA metabolism, DNA replication,
recombination, and repair].
Length = 291
Score = 27.5 bits (62), Expect = 9.5
Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
Query: 197 RMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGKIWVRIFPDK 253
R+ GK ++ L+ G A++ALE R ++ R +++ + +F ++
Sbjct: 160 RVRGKGNKERLVPLGEEAIEALE------RYLKEARPLLLKKKVKESDA---LFLNR 207
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.390
Gapped
Lambda K H
0.267 0.0700 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,197,913
Number of extensions: 1555532
Number of successful extensions: 1722
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1716
Number of HSP's successfully gapped: 43
Length of query: 323
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 226
Effective length of database: 6,635,264
Effective search space: 1499569664
Effective search space used: 1499569664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.6 bits)