BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045555
(175 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 121/195 (62%), Positives = 143/195 (73%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +F NMKN+DVISWT+IV+G+ N GQ+D+AR+YF Q+PERDYV WTAMIDGYLR+
Sbjct: 259 MDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRM 318
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILT---------------------TFNNDIFVG 99
NRF EAL LFREMQ SN++ DEFT V ILT + ND FVG
Sbjct: 319 NRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVG 378
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMY KCG+V KA++VF +M KDKFTWTAMIVGLAI+GHG+ AL MFS M+ ASI
Sbjct: 379 NALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASIT 438
Query: 160 LDEVTYVGVLSACTH 174
DE+TY+GVL ACTH
Sbjct: 439 PDEITYIGVLCACTH 453
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 52/195 (26%)
Query: 32 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT 91
VD+AR+ F + V W M+ GY RV +F+++ LF EM+ + + T V +L+
Sbjct: 158 VDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSA 217
Query: 92 FNN---------------------DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTW 130
+ ++ + LIDM+ CG++++AQ VF M +D +W
Sbjct: 218 CSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISW 277
Query: 131 TAMIVGLAISGHGD-------------------------------TALDMFSQMLRASIR 159
T+++ G A G D AL +F +M ++++
Sbjct: 278 TSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVK 337
Query: 160 LDEVTYVGVLSACTH 174
DE T V +L+AC H
Sbjct: 338 PDEFTMVSILTACAH 352
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 31/170 (18%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G++ ARQ F +P+ +W MI GY R+N + ++++ M SNI+ D FT +L
Sbjct: 55 GKMIYARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLL 114
Query: 90 T---------------------TFNNDIFVGIALIDMYCKCGDVEKAQRVF-----WKML 123
F++++FV A I M+ C V+ A++VF W+++
Sbjct: 115 KGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVV 174
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
TW M+ G + +F +M + + + VT V +LSAC+
Sbjct: 175 -----TWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACS 219
>gi|255553251|ref|XP_002517668.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543300|gb|EEF44832.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 512
Score = 246 bits (627), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 122/195 (62%), Positives = 143/195 (73%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M AL IF +MK++DVISWT IV+G+ N GQ+DIAR+YF QMPERDYV WTAMIDGYL+V
Sbjct: 240 MSVALGIFESMKSRDVISWTAIVTGFANIGQLDIARKYFDQMPERDYVSWTAMIDGYLQV 299
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
N F+EAL LF EMQTSN++ DEFT V ILT ND +VG
Sbjct: 300 NCFKEALVLFHEMQTSNVKPDEFTMVSILTACAQLGALELGEWVRTYIDKNKVKNDAYVG 359
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMY KCG+VEKA+ +F M R DKFTWTAMIVGLAI+G+G+ ALDMF QML+AS+
Sbjct: 360 NALIDMYFKCGNVEKARSIFNSMPRPDKFTWTAMIVGLAINGYGEEALDMFVQMLKASVT 419
Query: 160 LDEVTYVGVLSACTH 174
DE+TYVGVL ACTH
Sbjct: 420 PDEITYVGVLCACTH 434
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 86/212 (40%), Gaps = 52/212 (24%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
+V +++ Y G D+AR F + D V W AMI Y R+ ++ + TLF EM+
Sbjct: 122 NVFVQNALINMYSLCGLTDMARGIFDMSYKTDVVTWNAMISAYNRIKQYDKTKTLFHEME 181
Query: 75 TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVE 113
+ T V +L+ +++ V ALIDMY CG++
Sbjct: 182 KKRVLPSSVTLVSVLSACSKLKDLESGQKVHKYISDHVVQSNLIVENALIDMYAACGEMS 241
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGD----------------------------- 144
A +F M +D +WTA++ G A G D
Sbjct: 242 VALGIFESMKSRDVISWTAIVTGFANIGQLDIARKYFDQMPERDYVSWTAMIDGYLQVNC 301
Query: 145 --TALDMFSQMLRASIRLDEVTYVGVLSACTH 174
AL +F +M ++++ DE T V +L+AC
Sbjct: 302 FKEALVLFHEMQTSNVKPDEFTMVSILTACAQ 333
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 21/165 (12%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G ++ ARQ F +PE W M+ GY R++ + ++++ +M +++ D +T ++
Sbjct: 36 GDMNYARQLFDTIPEPTVFHWNTMLKGYSRIDSPKLGVSMYLDMLKNDVLPDCYTYPFLI 95
Query: 90 TTFNNDI---------------------FVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
F DI FV ALI+MY CG + A+ +F + D
Sbjct: 96 KGFKKDIAFEYGKELHCHVVKYGLGSNVFVQNALINMYSLCGLTDMARGIFDMSYKTDVV 155
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
TW AMI D +F +M + + VT V VLSAC+
Sbjct: 156 TWNAMISAYNRIKQYDKTKTLFHEMEKKRVLPSSVTLVSVLSACS 200
>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 243 bits (621), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 116/195 (59%), Positives = 144/195 (73%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M AL IF +M N+D+ISWTTIVSG+ N G++D+AR YF +MPE+DYV WTAMIDGY+R
Sbjct: 291 MDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRS 350
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
NRF+EAL LFR MQ +N++ DEFT V +LT ND+FV
Sbjct: 351 NRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVR 410
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMY KCGDV+KA+ +F +M ++DKFTWTAMIVGLA++GHG+ ALDMFS ML+ASI
Sbjct: 411 NALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASIL 470
Query: 160 LDEVTYVGVLSACTH 174
DE+TY+GVLSACTH
Sbjct: 471 PDEITYIGVLSACTH 485
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 88/212 (41%), Gaps = 52/212 (24%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
+V T +V Y+ GQ+D AR F P+ D + W +I Y +V +F E+ LF M+
Sbjct: 173 NVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVME 232
Query: 75 TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVE 113
+ T V +L+ +++ + A+IDMY CG+++
Sbjct: 233 DKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMD 292
Query: 114 KAQRVF----------W---------------------KMLRKDKFTWTAMIVGLAISGH 142
A +F W KM KD +WTAMI G S
Sbjct: 293 SALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNR 352
Query: 143 GDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
AL++F M +++ DE T V VL+AC H
Sbjct: 353 FKEALELFRNMQATNVKPDEFTMVSVLTACAH 384
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 72/165 (43%), Gaps = 21/165 (12%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G AR+ F ++PE + +W MI GY R++ + ++L+ EM ++ D +T +
Sbjct: 87 GDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLF 146
Query: 90 TTFNNDI---------------------FVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
F DI FV AL+ MY CG ++ A+ VF + D
Sbjct: 147 KGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVI 206
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
TW +I G + + +F M + VT V VLSAC+
Sbjct: 207 TWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACS 251
>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 116/195 (59%), Positives = 144/195 (73%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M AL IF +M N+D+ISWTTIVSG+ N G++D+AR YF +MPE+DYV WTAMIDGY+R
Sbjct: 270 MDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRS 329
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
NRF+EAL LFR MQ +N++ DEFT V +LT ND+FV
Sbjct: 330 NRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVR 389
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMY KCGDV+KA+ +F +M ++DKFTWTAMIVGLA++GHG+ ALDMFS ML+ASI
Sbjct: 390 NALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASIL 449
Query: 160 LDEVTYVGVLSACTH 174
DE+TY+GVLSACTH
Sbjct: 450 PDEITYIGVLSACTH 464
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 88/212 (41%), Gaps = 52/212 (24%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
+V T +V Y+ GQ+D AR F P+ D + W +I Y +V +F E+ LF M+
Sbjct: 152 NVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVME 211
Query: 75 TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVE 113
+ T V +L+ +++ + A+IDMY CG+++
Sbjct: 212 DKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMD 271
Query: 114 KAQRVF----------W---------------------KMLRKDKFTWTAMIVGLAISGH 142
A +F W KM KD +WTAMI G S
Sbjct: 272 SALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNR 331
Query: 143 GDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
AL++F M +++ DE T V VL+AC H
Sbjct: 332 FKEALELFRNMQATNVKPDEFTMVSVLTACAH 363
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 72/165 (43%), Gaps = 21/165 (12%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G AR+ F ++PE + +W MI GY R++ + ++L+ EM ++ D +T +
Sbjct: 66 GDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLF 125
Query: 90 TTFNNDI---------------------FVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
F DI FV AL+ MY CG ++ A+ VF + D
Sbjct: 126 KGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVI 185
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
TW +I G + + +F M + VT V VLSAC+
Sbjct: 186 TWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACS 230
>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 874
Score = 235 bits (600), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 114/195 (58%), Positives = 141/195 (72%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +F MK +DVISWT+IV+G+ N ++D+AR+YF QMPERDYV WTAMIDGYLR+
Sbjct: 291 MDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRM 350
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
NRF+E LTLFR+MQ SN++ DEFT V ILT ND F+G
Sbjct: 351 NRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIG 410
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMY KCG+VEKA+++F +M +KDKFTWTAMIVGLA +GHG+ AL MFS ML AS+
Sbjct: 411 NALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVT 470
Query: 160 LDEVTYVGVLSACTH 174
DE+TY+GV+ ACTH
Sbjct: 471 PDEITYIGVMCACTH 485
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 85/200 (42%), Gaps = 55/200 (27%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ--TSNIRRDEFTTVR 87
G V+ AR+ F + V W ++ GY R R+ E+ LF EM+ + + T V
Sbjct: 185 GLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVL 244
Query: 88 ILTT-------------FNNDIFVGI---------ALIDMYCKCGDVEKAQRVFWKMLRK 125
+L+ +N I GI ALIDM+ CG+++ A+ VF +M +
Sbjct: 245 MLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTR 304
Query: 126 DKFTWTAMIVGLAISGHGDTALDMFSQM---------------LR--------------- 155
D +WT+++ G A + D A F QM LR
Sbjct: 305 DVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQ 364
Query: 156 -ASIRLDEVTYVGVLSACTH 174
++++ DE T V +L+AC H
Sbjct: 365 MSNVKPDEFTMVSILTACAH 384
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 34/173 (19%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G V AR+ F ++P+ +W MI GY R+N ++L++ M NI+ D FT +L
Sbjct: 83 GDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLL 142
Query: 90 TTFNND----------------------IFVGIALIDMYCKCGDVEKAQRVF-----WKM 122
F D +FV I ++ CG V A+++F W++
Sbjct: 143 KGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEV 202
Query: 123 LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRA--SIRLDEVTYVGVLSACT 173
+ TW ++ G + + +F +M + + + VT V +LSAC+
Sbjct: 203 V-----TWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACS 250
>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930 [Vitis vinifera]
Length = 724
Score = 231 bits (589), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 116/196 (59%), Positives = 140/196 (71%), Gaps = 21/196 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M AL IF NMK++DVISWT IV+G+ N GQV +AR YF +MPERD+V WTAMIDGYL+V
Sbjct: 271 MDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQV 330
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVG 99
NRF+E L+LFREMQ +NI+ DEFT V ILT + D FVG
Sbjct: 331 NRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVG 390
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMY CG+VEKA R+F M +DK +WTA+I GLAI+G+G+ ALDMFSQML+ASI
Sbjct: 391 NALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASIT 450
Query: 160 LDEVTYVGVLSACTHN 175
DEVT +GVL ACTH+
Sbjct: 451 PDEVTCIGVLCACTHS 466
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 89/214 (41%), Gaps = 52/214 (24%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ +V ++ Y G+V +AR F + + D V W MI GY R +F E++ LF E
Sbjct: 151 SSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDE 210
Query: 73 MQTSNIRRDEFTTVRILTTFN--NDIFVGI-------------------ALIDMYCKCGD 111
M+ + T V +L+ + D+ VG ALIDMY CGD
Sbjct: 211 MERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGD 270
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTA------------------------- 146
++ A +F M +D +WTA++ G G A
Sbjct: 271 MDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQV 330
Query: 147 ------LDMFSQMLRASIRLDEVTYVGVLSACTH 174
L +F +M A+I+ DE T V +L+AC H
Sbjct: 331 NRFKEVLSLFREMQAANIKPDEFTMVSILTACAH 364
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 76/165 (46%), Gaps = 21/165 (12%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G ++ AR F MP ++ +W MI GY RV A++++ EM + DE+T +L
Sbjct: 67 GDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLL 126
Query: 90 TTFNND---------------------IFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
F D +FV ALI +Y G+V A+ VF + + D
Sbjct: 127 KRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVV 186
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
TW MI G S D ++ +F +M R + +T V VLSAC+
Sbjct: 187 TWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACS 231
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 88 ILTTFNNDIFVGIALIDMYCK--CGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDT 145
I T ++ V +I CK GD+E A+ VF M + F W MI G + G ++
Sbjct: 43 ICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNS 102
Query: 146 ALDMFSQMLRASIRLDEVTYVGVL 169
A+ M+ +ML + DE TY +L
Sbjct: 103 AVSMYCEMLERGVMPDEYTYPFLL 126
>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 228 bits (581), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 113/186 (60%), Positives = 135/186 (72%), Gaps = 21/186 (11%)
Query: 10 NMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 69
N KDVISWT IV+G++N GQVD AR+YF +MPERD+V WTAMIDGYLR+N ++EAL L
Sbjct: 191 NRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALML 250
Query: 70 FREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCK 108
FREMQTS I+ DEFT V +LT ND FVG ALIDMY K
Sbjct: 251 FREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFK 310
Query: 109 CGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGV 168
CG+VE A +F + ++DKFTWTAM+VGLAI+G G+ AL+MFSQML+AS+ DEVTYVGV
Sbjct: 311 CGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGV 370
Query: 169 LSACTH 174
LSACTH
Sbjct: 371 LSACTH 376
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 78/213 (36%), Gaps = 69/213 (32%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G + ARQ F +PE W M GY R+ + ++L+ EM N++ D +T +
Sbjct: 62 GDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLF 121
Query: 90 TTF---------------------NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
F ++++F ALI+MY CG ++ A+ +F + D
Sbjct: 122 KGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVV 181
Query: 129 TWTAMI-----------------VGLAISGHGDT-------------------------- 145
TW AMI G +G D
Sbjct: 182 TWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRL 241
Query: 146 -----ALDMFSQMLRASIRLDEVTYVGVLSACT 173
AL +F +M + I+ DE T V VL+AC
Sbjct: 242 NCYKEALMLFREMQTSKIKPDEFTMVSVLTACA 274
>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
Length = 695
Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/196 (51%), Positives = 128/196 (65%), Gaps = 21/196 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A+ IF +MK +DVISWT+IV GY+ RG + +AR YF QMP RD + WT MIDGYLR
Sbjct: 287 MDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRA 346
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
F E+L +FREMQ++ + DEFT V +LT ND+ VG
Sbjct: 347 GCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVG 406
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMY KCG EKAQ+VF M ++DKFTWTAM+VGLA +G G A+ +F QM SI+
Sbjct: 407 NALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQ 466
Query: 160 LDEVTYVGVLSACTHN 175
D++TY+GVLSAC H+
Sbjct: 467 PDDITYLGVLSACNHS 482
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 22/166 (13%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G V A + F ++PE D V+W MI G+ +V+ E + L+ M + D T +L
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141
Query: 90 TTFNND----------------------IFVGIALIDMYCKCGDVEKAQRVFWKMLRKDK 127
D ++V AL+ MY CG ++ A+ VF + ++D
Sbjct: 142 NGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDV 201
Query: 128 FTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
F+W MI G + ++++ +M R + VT + VLSAC+
Sbjct: 202 FSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACS 247
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 86/207 (41%), Gaps = 52/207 (25%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+V Y G +D+AR F + + D W MI GY R+ + E++ L EM+ + +
Sbjct: 174 NALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVS 233
Query: 80 RDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVEKAQRV 118
T + +L+ + + + AL++ Y CG+++ A R+
Sbjct: 234 PTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRI 293
Query: 119 F----------W---------------------KMLRKDKFTWTAMIVGLAISGHGDTAL 147
F W +M +D+ +WT MI G +G + +L
Sbjct: 294 FRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESL 353
Query: 148 DMFSQMLRASIRLDEVTYVGVLSACTH 174
++F +M A + DE T V VL+AC H
Sbjct: 354 EIFREMQSAGMIPDEFTMVSVLTACAH 380
>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g15930
gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/196 (51%), Positives = 128/196 (65%), Gaps = 21/196 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A+ IF +MK +DVISWT+IV GY+ RG + +AR YF QMP RD + WT MIDGYLR
Sbjct: 287 MDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRA 346
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
F E+L +FREMQ++ + DEFT V +LT ND+ VG
Sbjct: 347 GCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVG 406
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMY KCG EKAQ+VF M ++DKFTWTAM+VGLA +G G A+ +F QM SI+
Sbjct: 407 NALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQ 466
Query: 160 LDEVTYVGVLSACTHN 175
D++TY+GVLSAC H+
Sbjct: 467 PDDITYLGVLSACNHS 482
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 22/166 (13%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G V A + F ++PE D V+W MI G+ +V+ E + L+ M + D T +L
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141
Query: 90 TTFNND----------------------IFVGIALIDMYCKCGDVEKAQRVFWKMLRKDK 127
D ++V AL+ MY CG ++ A+ VF + ++D
Sbjct: 142 NGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDV 201
Query: 128 FTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
F+W MI G + ++++ +M R + VT + VLSAC+
Sbjct: 202 FSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACS 247
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 86/207 (41%), Gaps = 52/207 (25%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+V Y G +D+AR F + + D W MI GY R+ + E++ L EM+ + +
Sbjct: 174 NALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVS 233
Query: 80 RDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVEKAQRV 118
T + +L+ + + + AL++ Y CG+++ A R+
Sbjct: 234 PTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRI 293
Query: 119 F----------W---------------------KMLRKDKFTWTAMIVGLAISGHGDTAL 147
F W +M +D+ +WT MI G +G + +L
Sbjct: 294 FRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESL 353
Query: 148 DMFSQMLRASIRLDEVTYVGVLSACTH 174
++F +M A + DE T V VL+AC H
Sbjct: 354 EIFREMQSAGMIPDEFTMVSVLTACAH 380
>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Brachypodium distachyon]
Length = 552
Score = 195 bits (495), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 96/195 (49%), Positives = 130/195 (66%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A E+F M+ ++ +SWT+++SG++ GQVD AR F MPERD V WTAMIDGY++
Sbjct: 174 MDAAWELFEGMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQA 233
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
+FREAL +FREMQ S +R DEFT V ++T D FVG
Sbjct: 234 GQFREALEMFREMQFSKVRADEFTMVSVVTACAQLGALETGEWARIYMSRHGIKMDTFVG 293
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+DMY KCG +++A VF +M +DKFTWTA+I+GLA++GHG+ A++MF +MLR
Sbjct: 294 NALVDMYSKCGSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAINMFYRMLRVFEA 353
Query: 160 LDEVTYVGVLSACTH 174
DEVT++GVL+ACTH
Sbjct: 354 PDEVTFIGVLTACTH 368
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 90/222 (40%), Gaps = 57/222 (25%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERD---YVLWTAMIDGYLRVNRFR 64
FG N V S ++V Y RG +AR P R V+W A+I G+ R +FR
Sbjct: 48 FGMELNAHVAS--SLVLMYAARGDGAVARTLLDAWPARGGDTPVVWNALISGHRRSRQFR 105
Query: 65 EALTLFREMQTSNIRRDEFTTVRILTTFNNDIF---------------------VGIALI 103
+ F +M + + T + +L+ D + VG ALI
Sbjct: 106 LSCCSFVDMVRTGVVPTPVTYITVLSACGKDKYIWLGMQVHKCVVASGVLPDLKVGNALI 165
Query: 104 DMYCKC-------------------------------GDVEKAQRVFWKMLRKDKFTWTA 132
DMY +C G V++A+ +F M +D +WTA
Sbjct: 166 DMYAECSEMDAAWELFEGMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTA 225
Query: 133 MIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
MI G +G AL+MF +M + +R DE T V V++AC
Sbjct: 226 MIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSVVTACAQ 267
>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
Length = 627
Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 98/195 (50%), Positives = 128/195 (65%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
MG A ++F M+ + V+SWT+++SG GQVD AR F +MPERD V WTAMIDGY+
Sbjct: 174 MGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWA 233
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
RFREAL +FREMQ SN+ DEFT V ++T D FVG
Sbjct: 234 ARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVG 293
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMY KCG +E+A VF M +DKFTWTA+I+GLA++G+ + A++MF +M+R S
Sbjct: 294 NALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSET 353
Query: 160 LDEVTYVGVLSACTH 174
DEVT++GVL+ACTH
Sbjct: 354 PDEVTFIGVLTACTH 368
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 73/180 (40%), Gaps = 53/180 (29%)
Query: 48 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---DIFVGI---- 100
V W A+I G+ R RF E+ F +M + T V +L+ D+ +G+
Sbjct: 88 VAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHG 147
Query: 101 ---------------ALIDMYCKCGD-------------------------------VEK 114
AL+DMY +C D V++
Sbjct: 148 RVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDE 207
Query: 115 AQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
A+ +F +M +D +WTAMI G + AL+MF +M +++ DE T V V++AC
Sbjct: 208 ARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQ 267
>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
Length = 649
Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 96/195 (49%), Positives = 128/195 (65%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A ++F M+ + V+SWT+++SG G+VD AR F +MPERD V WTAMIDGY++
Sbjct: 196 MESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQA 255
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
RFREAL +FREMQ SN+ DEFT V ++T D FVG
Sbjct: 256 ARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVG 315
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMY KCG +E+A VF M +DKFTWTA+I+GLA++G+G+ A++MF +M+ S
Sbjct: 316 NALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSET 375
Query: 160 LDEVTYVGVLSACTH 174
DEVT++GVL+ACTH
Sbjct: 376 PDEVTFIGVLTACTH 390
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 77/185 (41%), Gaps = 54/185 (29%)
Query: 44 ERD-YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---DIFVG 99
ERD V+W A+I G+ R RF EA F +M + T V +L+ D+ +G
Sbjct: 105 ERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLG 164
Query: 100 I-------------------ALIDMYCKCGDVEKAQRVF----------W---------- 120
+ AL+DMY +C D+E A ++F W
Sbjct: 165 MQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRL 224
Query: 121 -----------KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVL 169
+M +D +WTAMI G + AL+MF +M +++ DE T V V+
Sbjct: 225 GRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVI 284
Query: 170 SACTH 174
+AC
Sbjct: 285 TACAQ 289
>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
Length = 665
Score = 191 bits (486), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 97/195 (49%), Positives = 125/195 (64%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +F M+ + + SWT+++SG + GQVD AR F MPERD + WTAMIDGY++V
Sbjct: 212 MDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQV 271
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
RFR+AL FR MQ +R DEFT V ++T D+FVG
Sbjct: 272 GRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVG 331
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMY KCG +E+A VF M +DKFTWTA+I+GLA++G G+ A+DMF +MLRA
Sbjct: 332 NALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQT 391
Query: 160 LDEVTYVGVLSACTH 174
DEVT+VGVL+ACTH
Sbjct: 392 PDEVTFVGVLTACTH 406
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 21/127 (16%)
Query: 48 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN--DIFVGI----- 100
V+W A+I G+ R RF + F +M ++ T V +L+ D+ +G+
Sbjct: 127 VMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKR 186
Query: 101 --------------ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTA 146
AL+DMY +CGD++ A +F M + +WT++I GL SG D A
Sbjct: 187 VLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRA 246
Query: 147 LDMFSQM 153
D+F M
Sbjct: 247 RDLFDHM 253
Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 24/43 (55%)
Query: 130 WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
W A+I G SG + + F M+RAS VTYV VLSAC
Sbjct: 129 WNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSAC 171
>gi|297738897|emb|CBI28142.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/169 (49%), Positives = 121/169 (71%), Gaps = 4/169 (2%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE 65
+IF +M K VI WT++VSGY+N GQ+D AR+ F + P RD VLWTAMI+GY++ NRF +
Sbjct: 223 QIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDD 282
Query: 66 ALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK 125
A+ LFREMQ + D FT V +LT D VG ALI+MY KCG +EK+ +F + K
Sbjct: 283 AVALFREMQIKRVSPDRFTLVALLT----DAVVGTALIEMYAKCGFIEKSLEIFNGLKEK 338
Query: 126 DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
D +WT++I GLA++G AL++F++M++ ++ D++T++GVLSAC+H
Sbjct: 339 DTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSH 387
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 76/156 (48%), Gaps = 14/156 (8%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D +++ Y G+V RQ F +MP+RD V W +I GY++ R+ +A+ +FR++
Sbjct: 166 DTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRQI- 224
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
F + I T + +++ Y CG +++A+ +F + +D WTAMI
Sbjct: 225 --------FNDMPIKT-----VICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMI 271
Query: 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLS 170
G D A+ +F +M + D T V +L+
Sbjct: 272 NGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLT 307
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 66/146 (45%), Gaps = 21/146 (14%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFT----- 84
G + A + F + ++ +I + + FR+A+ LFR+++ + D FT
Sbjct: 80 GNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVF 139
Query: 85 -------TVR---------ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
VR + + D +V +L+DMY + G V+ ++VF +M ++D
Sbjct: 140 KAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVV 199
Query: 129 TWTAMIVGLAISGHGDTALDMFSQML 154
+W +I G + A+D+F Q+
Sbjct: 200 SWNVLISGYVKCRRYEDAVDVFRQIF 225
Score = 40.0 bits (92), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQM 42
+LEIF +K KD SWT+I+ G G+ A + FA+M
Sbjct: 328 SLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEM 366
>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 650
Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats.
Identities = 97/192 (50%), Positives = 118/192 (61%), Gaps = 32/192 (16%)
Query: 12 KNKDVISWTTIVSGYINRG----------QVDIARQYFAQMPERDYVLWTAMIDGYLRVN 61
K KD + W + YIN G ++D A+ F M RD V WTAMIDGYLR+N
Sbjct: 203 KLKD-LEWGKHIFKYINGGIVEHMFAACGEMDEAQGVFDNMKTRDVVSWTAMIDGYLRMN 261
Query: 62 RFREALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGI 100
F AL LFREMQ SN++ DEFT V IL + ND FVG
Sbjct: 262 HFIGALALFREMQMSNVKPDEFTMVSILIACALLGALELGEWVKTCIDKNSNKNDSFVGN 321
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
AL+DMY KCG+V KA++VF +M +KDKFTWT MIVGLAI+GHG+ AL MFS M+ AS+
Sbjct: 322 ALVDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAINGHGEEALAMFSNMIEASVTP 381
Query: 161 DEVTYVGVLSAC 172
DE+TY+GVL AC
Sbjct: 382 DEITYIGVLCAC 393
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G VD+A + F + V W M+ GY RV +F+ + L S ++ E+ I
Sbjct: 156 GIVDLAHKVFDMGDACEVVTWNIMLSGYNRVKQFKISKMLLVLSACSKLKDLEWGK-HIF 214
Query: 90 TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDM 149
N I + M+ CG++++AQ VF M +D +WTAMI G H AL +
Sbjct: 215 KYINGGI-----VEHMFAACGEMDEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFIGALAL 269
Query: 150 FSQMLRASIRLDEVTYVGVLSAC 172
F +M ++++ DE T V +L AC
Sbjct: 270 FREMQMSNVKPDEFTMVSILIAC 292
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 21/128 (16%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFT---TV 86
G ++ A Q F +P +W MI GY +++ ++++ M TSNI+ D FT ++
Sbjct: 55 GNMNYAHQVFDTIPHPSMFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSL 114
Query: 87 RILTT------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
+ T F++++FV A I M+ CG V+ A +VF +
Sbjct: 115 KGFTRDMALQHGKELLNHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVV 174
Query: 129 TWTAMIVG 136
TW M+ G
Sbjct: 175 TWNIMLSG 182
Score = 43.1 bits (100), Expect = 0.037, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 36/80 (45%)
Query: 10 NMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 69
N D +V Y G V A++ F +M ++D WT MI G EAL +
Sbjct: 311 NSNKNDSFVGNALVDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAINGHGEEALAM 370
Query: 70 FREMQTSNIRRDEFTTVRIL 89
F M +++ DE T + +L
Sbjct: 371 FSNMIEASVTPDEITYIGVL 390
>gi|297743485|emb|CBI36352.3| unnamed protein product [Vitis vinifera]
Length = 605
Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats.
Identities = 95/217 (43%), Positives = 118/217 (54%), Gaps = 60/217 (27%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVD--------------------------------- 33
+F DV++W ++SGY Q D
Sbjct: 176 VFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKD 235
Query: 34 ------IARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVR 87
+ R YF +MPERD+V WTAMIDGYL+VNRF+E L+LFREMQ +NI+ DEFT V
Sbjct: 236 LNVGKRVHRNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVS 295
Query: 88 ILTTFNN---------------------DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKD 126
ILT + D FVG ALIDMY CG+VEKA R+F M +D
Sbjct: 296 ILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRD 355
Query: 127 KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEV 163
K +WTA+I GLAI+G+G+ ALDMFSQML+ASI DEV
Sbjct: 356 KISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEV 392
Score = 82.4 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 51/165 (30%), Positives = 76/165 (46%), Gaps = 21/165 (12%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G ++ AR F MP ++ +W MI GY RV A++++ EM + DE+T +L
Sbjct: 67 GDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLL 126
Query: 90 TTFNND---------------------IFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
F D +FV ALI +Y G+V A+ VF + + D
Sbjct: 127 KRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVV 186
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
TW MI G S D ++ +F +M R + +T V VLSAC+
Sbjct: 187 TWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACS 231
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 51/166 (30%), Positives = 77/166 (46%), Gaps = 18/166 (10%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ +V ++ Y G+V +AR F + + D V W MI GY R +F E++ LF E
Sbjct: 151 SSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDE 210
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRV----FWKMLRKDKF 128
M+ + T V +L+ + K D+ +RV F KM +D
Sbjct: 211 MERMRVLPSSITLVSVLSACS--------------KLKDLNVGKRVHRNYFDKMPERDFV 256
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+WTAMI G L +F +M A+I+ DE T V +L+AC H
Sbjct: 257 SWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAH 302
Score = 43.5 bits (101), Expect = 0.028, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 88 ILTTFNNDIFVGIALIDMYCK--CGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDT 145
I T ++ V +I CK GD+E A+ VF M + F W MI G + G ++
Sbjct: 43 ICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNS 102
Query: 146 ALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
A+ M+ +ML + DE TY +L T +
Sbjct: 103 AVSMYCEMLERGVMPDEYTYPFLLKRFTRD 132
>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Vitis vinifera]
Length = 662
Score = 174 bits (442), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 85/195 (43%), Positives = 123/195 (63%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ A EIF +M K VI WT++VSGY+N GQ+D AR+ F + P RD VLWTAMI+GY++
Sbjct: 284 LSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQF 343
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVG 99
NRF +A+ LFREMQ + D FT V +LT D VG
Sbjct: 344 NRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDENKIMIDAVVG 403
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALI+MY KCG +EK+ +F + KD +WT++I GLA++G AL++F++M++ ++
Sbjct: 404 TALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVK 463
Query: 160 LDEVTYVGVLSACTH 174
D++T++GVLSAC+H
Sbjct: 464 PDDITFIGVLSACSH 478
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 24/166 (14%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM- 73
D +++ Y G+V RQ F +MP+RD V W +I GY++ R+ +A+ +FR M
Sbjct: 166 DTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQ 225
Query: 74 QTSNIRRDEFTTVRILTT--------------------FNNDIFVGIALIDMYCKCGDVE 113
Q S++R +E T V L+ I +G AL+DMYCKCG +
Sbjct: 226 QQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVREQLGFTIKIGNALVDMYCKCGHLS 285
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
A+ +F M K WT+M+ G G D A ++F R+ +R
Sbjct: 286 IAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFE---RSPVR 328
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 22/165 (13%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFT----- 84
G + A + F + ++ +I + + FR+A+ LFR+++ + D FT
Sbjct: 80 GNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVF 139
Query: 85 -------TVR---------ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
VR + + D +V +L+DMY + G V+ ++VF +M ++D
Sbjct: 140 KAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVV 199
Query: 129 TWTAMIVGLAISGHGDTALDMFSQM-LRASIRLDEVTYVGVLSAC 172
+W +I G + A+D+F +M ++S+R +E T V LSAC
Sbjct: 200 SWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSAC 244
>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 683
Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/195 (43%), Positives = 123/195 (63%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ A +F M +K+VI WTT+VSGY N G+++ AR+ F P RD V+WTAMI+GY++
Sbjct: 289 LSIARAVFEEMPSKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQF 348
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVG 99
NRF EA+ LFREMQ ++ D+F V +LT D VG
Sbjct: 349 NRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDENRIPIDAVVG 408
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALI+MY KCG +EKA +F+ + KD +WT++I GLA++G AL++FS+M +A +R
Sbjct: 409 TALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLAMNGKTSKALELFSKMKQAGVR 468
Query: 160 LDEVTYVGVLSACTH 174
D++T++GVLSAC+H
Sbjct: 469 PDDITFIGVLSACSH 483
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 75/151 (49%), Gaps = 21/151 (13%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT-SNIR 79
+++ Y D+ + F +MP+RD + W MI GY++ RF +A+ +F MQ S +
Sbjct: 177 SLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQEESGLM 236
Query: 80 RDEFTTVRILTTF-----------------NNDIF---VGIALIDMYCKCGDVEKAQRVF 119
DE T V L+ +N F +G AL+DMYCKCG + A+ VF
Sbjct: 237 PDEATVVSTLSACTALKRLELGKKIHHYVRDNVKFTPIIGNALLDMYCKCGCLSIARAVF 296
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMF 150
+M K+ WT M+ G A G + A ++F
Sbjct: 297 EEMPSKNVICWTTMVSGYANCGELEEARELF 327
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 85/192 (44%), Gaps = 24/192 (12%)
Query: 6 EIFGNMKNKDVISWTTIVSGYIN--RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
+IF ++D++S +++ + G ++ A + F + +++ +I + + +
Sbjct: 59 QIFRVGLHQDIVSLNKLMAFCTDPFNGNLNYAEKMFKYIRYPCLLIYNLIIKAFAKKGNY 118
Query: 64 REALTLFREMQTSNIRRDEFT------------------TVRILTT---FNNDIFVGIAL 102
+ L LF +++ + D FT +R L T D +V +L
Sbjct: 119 KRTLVLFSKLREDGLWPDNFTYPFVFKAIGYLGEVSKAEKLRGLVTKTGLEFDTYVRNSL 178
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS-IRLD 161
IDMY + + + +F +M +D +W MI G + A+++F +M S + D
Sbjct: 179 IDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQEESGLMPD 238
Query: 162 EVTYVGVLSACT 173
E T V LSACT
Sbjct: 239 EATVVSTLSACT 250
>gi|224126329|ref|XP_002329527.1| predicted protein [Populus trichocarpa]
gi|222870236|gb|EEF07367.1| predicted protein [Populus trichocarpa]
Length = 377
Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 85/195 (43%), Positives = 122/195 (62%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ A +IF M +K+VI WT++VSGY+N G++D AR+ F + P +D VLWTAMI+GY++
Sbjct: 8 LSVARKIFDEMPHKNVICWTSMVSGYVNYGELDKARELFERSPVKDVVLWTAMINGYVQF 67
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVG 99
N F EA+ LF+EMQ ++ D+F V +LT D VG
Sbjct: 68 NHFDEAVALFQEMQIQRVKPDKFVLVALLTGCAQMGALEQGTWIHGYIDEKGIPVDAVVG 127
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
+LI+MY KCG +EKA R+F + KD TWT++I GLA++G AL++FS+M +
Sbjct: 128 TSLIEMYSKCGCIEKALRIFCGLREKDTATWTSIICGLAMNGKTSKALELFSKMKQVEAI 187
Query: 160 LDEVTYVGVLSACTH 174
DEVT++GVLSAC+H
Sbjct: 188 PDEVTFIGVLSACSH 202
Score = 43.1 bits (100), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
MYCKCG + A+++F +M K+ WT+M+ G G D A ++F +
Sbjct: 1 MYCKCGCLSVARKIFDEMPHKNVICWTSMVSGYVNYGELDKARELFER 48
>gi|90657651|gb|ABD96949.1| hypothetical protein [Cleome spinosa]
Length = 639
Score = 171 bits (434), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 88/192 (45%), Positives = 117/192 (60%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A IF M NK+VI WT++VSGY + G +D AR+ F + P RD VLWTAMI+GY++ N F
Sbjct: 269 ARAIFDEMGNKNVICWTSMVSGYASNGSLDEARELFERSPVRDIVLWTAMINGYVQFNLF 328
Query: 64 REALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIAL 102
EAL LFR+MQ +R D F V +L + D VG AL
Sbjct: 329 DEALKLFRKMQIQRLRPDNFILVTLLKGCAQTGALEQGKWLHGYIHENSITLDRVVGTAL 388
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+D+Y KCG VEKA VF++M +D +WT++I GLA++G ALD FSQM A R D+
Sbjct: 389 VDVYAKCGCVEKALEVFYEMKERDTASWTSVIYGLAVNGMTSKALDFFSQMEEAGFRPDD 448
Query: 163 VTYVGVLSACTH 174
+T++GVL+AC H
Sbjct: 449 ITFIGVLTACNH 460
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 90/166 (54%), Gaps = 24/166 (14%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D +++ Y G++++A++ F ++PERD V W +I Y+ +F +A+ +FR M+
Sbjct: 148 DACVCNSVMGMYGALGKMEVAKKVFDEIPERDVVSWNVLISSYVGHRKFEDAIAVFRRMR 207
Query: 75 -TSNIRRDEFTTVRILTTF----NNDIF----------------VGIALIDMYCKCGDVE 113
SN++ DE T V L+ N ++ +G AL+DMYCKCG V+
Sbjct: 208 RESNLKADEATVVSTLSACSVLRNQEVGEEIHRYVDAELEMTTKIGNALLDMYCKCGCVD 267
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
KA+ +F +M K+ WT+M+ G A +G D A ++F R+ +R
Sbjct: 268 KARAIFDEMGNKNVICWTSMVSGYASNGSLDEARELFE---RSPVR 310
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 76/185 (41%), Gaps = 20/185 (10%)
Query: 9 GNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALT 68
G N D ++ + +RG + A + + V++ MI + FR+ L
Sbjct: 43 GLQDNMDTLTKIVLFCTDPSRGSIRYAERVLGFVQSPCLVMYNLMIKAVAKDENFRKVLV 102
Query: 69 LFREMQTSNIRRDEFTTVRILTTFNN-------------------DIFVGIALIDMYCKC 109
LF E++ + D FT + D V +++ MY
Sbjct: 103 LFSELRKQGLNPDNFTLPPVFKAMGCLGKVVEGEKVHGYVVKSGFDACVCNSVMGMYGAL 162
Query: 110 GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS-IRLDEVTYVGV 168
G +E A++VF ++ +D +W +I + A+ +F +M R S ++ DE T V
Sbjct: 163 GKMEVAKKVFDEIPERDVVSWNVLISSYVGHRKFEDAIAVFRRMRRESNLKADEATVVST 222
Query: 169 LSACT 173
LSAC+
Sbjct: 223 LSACS 227
>gi|297846530|ref|XP_002891146.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336988|gb|EFH67405.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 554
Score = 168 bits (425), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 84/192 (43%), Positives = 120/192 (62%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A IF +M++K+V WT++VSGY++ G+ D AR+ F + P +D VLWTAM++GY++ NRF
Sbjct: 185 ARAIFDSMRDKNVKCWTSMVSGYVSNGRTDEARELFERSPVKDVVLWTAMMNGYVQFNRF 244
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
EAL LFR MQT+ IR D F V +LT D VG AL
Sbjct: 245 DEALELFRCMQTARIRPDNFVLVSLLTGCAQTGALEQGKWIHGYIRENRVTVDKVVGTAL 304
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY KCG +E A VF++M +D +WT++I GLA +G ALD++ +M +RLD+
Sbjct: 305 VDMYAKCGCIETALGVFYEMKERDTASWTSLIYGLATNGMSGRALDLYYEMENVGVRLDD 364
Query: 163 VTYVGVLSACTH 174
+T+V VL+AC+H
Sbjct: 365 ITFVAVLTACSH 376
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 79/148 (53%), Gaps = 21/148 (14%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-QTSNIRRDEFT 84
Y G+++I + F +MPERD V W +I Y+ RF +A+++F+ M + SN++ DE T
Sbjct: 75 YAALGKMEITHKVFDEMPERDVVSWNGLISSYVGHGRFEDAISVFQRMSRESNLKADEGT 134
Query: 85 TVR--------------------ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124
V ++T F + G AL+DM+CKCG ++KA+ +F M
Sbjct: 135 IVSTLSACSVLKNLEIGERIYRYVVTEFEMSVRTGNALVDMFCKCGCLDKARAIFDSMRD 194
Query: 125 KDKFTWTAMIVGLAISGHGDTALDMFSQ 152
K+ WT+M+ G +G D A ++F +
Sbjct: 195 KNVKCWTSMVSGYVSNGRTDEARELFER 222
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 22/143 (15%)
Query: 53 MIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL---------------------TT 91
M+ F + L LF E++ + D FT +L T
Sbjct: 1 MLKSLAESKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKTG 60
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
+D +V +L+ MY G +E +VF +M +D +W +I G + A+ +F
Sbjct: 61 LESDSYVCNSLMGMYAALGKMEITHKVFDEMPERDVVSWNGLISSYVGHGRFEDAISVFQ 120
Query: 152 QMLRAS-IRLDEVTYVGVLSACT 173
+M R S ++ DE T V LSAC+
Sbjct: 121 RMSRESNLKADEGTIVSTLSACS 143
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 19/162 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D + T +V Y G ++ A F +M ERD WT++I G AL L+ EM+
Sbjct: 297 DKVVGTALVDMYAKCGCIETALGVFYEMKERDTASWTSLIYGLATNGMSGRALDLYYEME 356
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT----- 129
+R D+ T V +LT ++ FV + +R+F+ M + K
Sbjct: 357 NVGVRLDDITFVAVLTACSHGGFVA--------------EGRRIFYSMTERHKIQPKSEH 402
Query: 130 WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
++ +I L +G D A ++ +M + Y +LSA
Sbjct: 403 YSCLIDLLCRAGLLDEAEELIDKMHGERDKTLVPVYCSLLSA 444
>gi|326518042|dbj|BAK07273.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 527
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/193 (44%), Positives = 114/193 (59%), Gaps = 21/193 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+ +F M +++V+SWTT+VSGY GQVD AR F Q E+D ++WTAMI+ Y++ F
Sbjct: 200 AVNLFEKMPSRNVVSWTTLVSGYAFAGQVDKARLLFHQCTEKDLIMWTAMINAYVQHGCF 259
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
EAL+LFR+MQ I D FT V +LT N D +G AL
Sbjct: 260 IEALSLFRDMQMHQIEPDRFTVVTLLTCCANLGALDQGQLIHQFAEGRNMKLDAVLGTAL 319
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG VEK+ VF +M +D WTA+I GLA +G AL++F M R+ + D
Sbjct: 320 IDMYAKCGHVEKSVEVFERMEGRDTKAWTAIICGLATNGQAGRALELFEDMERSEAKPDS 379
Query: 163 VTYVGVLSACTHN 175
VT++GVLSAC H
Sbjct: 380 VTFIGVLSACCHG 392
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 20/158 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D + ++++ Y G+++ AR+ F +MP+R V+W M+ Y+R R EA+ L EM+
Sbjct: 80 DAYTASSLMDMYTMLGRLEAARKVFDEMPQRAVVVWNMMLRCYVRCGRNTEAVALAEEME 139
Query: 75 TSNIRRDEFTTVRILTTFNN--------------------DIFVGIALIDMYCKCGDVEK 114
+ D T + LT + + V AL+DMY K G +E+
Sbjct: 140 RGRLTPDRVTLLTALTACSRAGDLSLGRKIHAYMDGVTGFSLPVANALLDMYVKNGCLEE 199
Query: 115 AQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
A +F KM ++ +WT ++ G A +G D A +F Q
Sbjct: 200 AVNLFEKMPSRNVVSWTTLVSGYAFAGQVDKARLLFHQ 237
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%)
Query: 90 TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDM 149
T F D + +L+DMY G +E A++VF +M ++ W M+ G A+ +
Sbjct: 75 TGFRWDAYTASSLMDMYTMLGRLEAARKVFDEMPQRAVVVWNMMLRCYVRCGRNTEAVAL 134
Query: 150 FSQMLRASIRLDEVTYVGVLSACT 173
+M R + D VT + L+AC+
Sbjct: 135 AEEMERGRLTPDRVTLLTALTACS 158
>gi|115468780|ref|NP_001057989.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|50725579|dbj|BAD33047.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|113596029|dbj|BAF19903.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|125597760|gb|EAZ37540.1| hypothetical protein OsJ_21869 [Oryza sativa Japonica Group]
Length = 530
Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 114/193 (59%), Gaps = 21/193 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+++F M +++ISWT +VSGY GQ+D AR F Q E+D +LWTAMI+ ++ F
Sbjct: 203 AVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINACVQHGCF 262
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
EALTLFR+MQ + D FT V +LT N D +G AL
Sbjct: 263 EEALTLFRDMQMQRVEPDRFTVVTLLTCCANLGALDQGEWIHQYAEQRKMKIDAVLGTAL 322
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG +EK+ VFW+M +D WTA+I GLA +G AL++F M R+ ++ D
Sbjct: 323 IDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQDMQRSKVKPDG 382
Query: 163 VTYVGVLSACTHN 175
VT++GVLSAC H
Sbjct: 383 VTFIGVLSACCHG 395
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 24/181 (13%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D + ++++ Y G+VDIAR+ F +MP R VLW M+ Y+R + A+ L +M+
Sbjct: 83 DAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGWYSAAVALSEQME 142
Query: 75 TSNIRRDEFTTVRILTT--------------------FNNDIFVGIALIDMYCKCGDVEK 114
S + D T V +T F ++ V AL+DMY K +E+
Sbjct: 143 RSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNVFGFNLPVANALLDMYTKNDCLEE 202
Query: 115 AQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
A ++F +M ++ +WT ++ G ++G D A +F+Q D + + +++AC
Sbjct: 203 AVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQCKEK----DLILWTAMINACVQ 258
Query: 175 N 175
+
Sbjct: 259 H 259
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%)
Query: 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
+ T F D + G +L++MY G V+ A++VF +M + W M+ G A+
Sbjct: 76 VKTGFRWDAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGWYSAAV 135
Query: 148 DMFSQMLRASIRLDEVTYVGVLSACT 173
+ QM R+ + D VT V ++AC+
Sbjct: 136 ALSEQMERSGVTPDRVTLVTAVTACS 161
>gi|125555946|gb|EAZ01552.1| hypothetical protein OsI_23585 [Oryza sativa Indica Group]
Length = 530
Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 114/193 (59%), Gaps = 21/193 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+++F M +++ISWT +VSGY GQ+D AR F Q E+D +LWTAMI+ ++ F
Sbjct: 203 AVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINACVQHGCF 262
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
EALTLFR+MQ + D FT V +LT N D +G AL
Sbjct: 263 EEALTLFRDMQMQRVEPDRFTVVTLLTCCANLGALDQGEWIHQYAEQRKMKIDAVLGTAL 322
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG +EK+ VFW+M +D WTA+I GLA +G AL++F M R+ ++ D
Sbjct: 323 IDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQDMQRSKVKPDG 382
Query: 163 VTYVGVLSACTHN 175
VT++GVLSAC H
Sbjct: 383 VTFIGVLSACCHG 395
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 89/181 (49%), Gaps = 24/181 (13%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D + ++++ Y G+VDIAR+ F +MP R VLW M+ Y+R R+ A+ L +M+
Sbjct: 83 DAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGRYSAAVALSEQME 142
Query: 75 TSNIRRDEFTTVRILTT--------------------FNNDIFVGIALIDMYCKCGDVEK 114
S + D T V +T F ++ V AL+DMY K +E+
Sbjct: 143 RSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNVFGFNLPVANALLDMYTKNDCLEE 202
Query: 115 AQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
A ++F +M ++ +WT ++ G ++G D A +F+Q D + + +++AC
Sbjct: 203 AVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQCKEK----DLILWTAMINACVQ 258
Query: 175 N 175
+
Sbjct: 259 H 259
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%)
Query: 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
I T F D + G +L++MY G V+ A++VF +M + W M+ G A+
Sbjct: 76 IKTGFRWDAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGRYSAAV 135
Query: 148 DMFSQMLRASIRLDEVTYVGVLSACT 173
+ QM R+ + D VT V ++AC+
Sbjct: 136 ALSEQMERSGVTPDRVTLVTAVTACS 161
>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like, partial [Cucumis sativus]
Length = 735
Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 83/195 (42%), Positives = 120/195 (61%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ A IF M K+VI WT+++SGYIN G + AR F + P RD VLWTAMI+GY++
Sbjct: 349 LNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQF 408
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVG 99
+ F +A+ LFREMQ I+ D+FT V +LT D+ VG
Sbjct: 409 HHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVG 468
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALI+MY KCG V+K+ +F+++ KD +WT++I GLA++G AL +FS+M R +
Sbjct: 469 TALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAK 528
Query: 160 LDEVTYVGVLSACTH 174
D++T++GVLSAC+H
Sbjct: 529 PDDITFIGVLSACSH 543
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 88/208 (42%), Gaps = 52/208 (25%)
Query: 19 WTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS-N 77
+ +++ Y V+ A++ F +M RD V W MI GY+R RF +A+ FREMQ N
Sbjct: 235 YNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGN 294
Query: 78 IRRDEFTTVRILTT--------FNNDIF------------VGIALIDMYCKCGDVEKAQR 117
+ DE T V L+ ++I + AL+DMY KCG + A+
Sbjct: 295 EKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRIDNALLDMYAKCGCLNIARN 354
Query: 118 VFWKMLRKDKFTWTAMIVGLAISG-------------------------------HGDTA 146
+F +M K+ WT+MI G G H D A
Sbjct: 355 IFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDA 414
Query: 147 LDMFSQMLRASIRLDEVTYVGVLSACTH 174
+ +F +M I+ D+ T V +L+ C
Sbjct: 415 VALFREMQIQKIKPDKFTVVTLLTGCAQ 442
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 22/166 (13%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G + A + F + + ++ M+ Y + R+ L LF++++ + D FT +L
Sbjct: 145 GNLRYAEKIFNYVQDPSLFVYNVMVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVL 204
Query: 90 ---------------------TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
T + D +V +LIDMY + +VE A+++F +M +D
Sbjct: 205 KAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSV 264
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLR-ASIRLDEVTYVGVLSACT 173
+W MI G + A++ F +M + + + DE T V LSACT
Sbjct: 265 SWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACT 310
>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Cucumis sativus]
Length = 781
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 120/195 (61%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ A IF M K+VI WT+++SGYIN G + AR F + P RD VLWTAMI+GY++
Sbjct: 395 LNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQF 454
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVG 99
+ F +A+ LFREMQ ++ D+FT V +LT D+ VG
Sbjct: 455 HHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVG 514
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALI+MY KCG V+K+ +F+++ KD +WT++I GLA++G AL +FS+M R +
Sbjct: 515 TALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAK 574
Query: 160 LDEVTYVGVLSACTH 174
D++T++GVLSAC+H
Sbjct: 575 PDDITFIGVLSACSH 589
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 75/155 (48%), Gaps = 21/155 (13%)
Query: 19 WTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS-N 77
+ +++ Y V+ A++ F +M RD V W MI GY+R RF +A+ FREMQ N
Sbjct: 281 YNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGN 340
Query: 78 IRRDEFTTVRILTT--------FNNDIF------------VGIALIDMYCKCGDVEKAQR 117
+ DE T V L+ ++I + AL+DMY KCG + A+
Sbjct: 341 EKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRIDNALLDMYAKCGCLNIARN 400
Query: 118 VFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
+F +M K+ WT+MI G G A D+F +
Sbjct: 401 IFDEMSMKNVICWTSMISGYINCGDLREARDLFDK 435
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 22/166 (13%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G + A + F + + ++ M+ Y + R+ L LF++++ + D FT +L
Sbjct: 191 GNLRYAEKIFNYVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVL 250
Query: 90 ---------------------TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
T + D +V +LIDMY + +VE A+++F +M +D
Sbjct: 251 KAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSV 310
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLR-ASIRLDEVTYVGVLSACT 173
+W MI G + A++ F +M + + + DE T V LSACT
Sbjct: 311 SWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACT 356
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 31/197 (15%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQM-------PERDYVLWTAM--- 53
A ++F M +D +SW ++SGY+ + + A F +M P+ V+ T
Sbjct: 297 AKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACT 356
Query: 54 ----------IDGYLR-----VNRFREA-LTLFREMQTSNIRRDEFTTVRILTTFNNDIF 97
I Y+R R A L ++ + NI R+ F + + ++
Sbjct: 357 ALKNLELGDEIHNYVRKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSM-----KNVI 411
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
++I Y CGD+ +A+ +F K +D WTAMI G H D A+ +F +M
Sbjct: 412 CWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQR 471
Query: 158 IRLDEVTYVGVLSACTH 174
++ D+ T V +L+ C
Sbjct: 472 VKPDKFTVVTLLTGCAQ 488
>gi|15221713|ref|NP_174428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169458|sp|Q9C866.1|PPR65_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31430
gi|12322531|gb|AAG51260.1|AC027135_1 PPR-repeat protein [Arabidopsis thaliana]
gi|332193234|gb|AEE31355.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 570
Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 118/192 (61%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F +M++K+V WT++V GY++ G++D AR F + P +D VLWTAM++GY++ NRF
Sbjct: 201 ARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRF 260
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
EAL LFR MQT+ IR D F V +LT D VG AL
Sbjct: 261 DEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTAL 320
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY KCG +E A VF+++ +D +WT++I GLA++G ALD++ +M +RLD
Sbjct: 321 VDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDA 380
Query: 163 VTYVGVLSACTH 174
+T+V VL+AC H
Sbjct: 381 ITFVAVLTACNH 392
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 95/207 (45%), Gaps = 52/207 (25%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-QTSNI 78
+++ Y + G+++I + F +MP+RD V W +I Y+ RF +A+ +F+ M Q SN+
Sbjct: 85 NSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDAIGVFKRMSQESNL 144
Query: 79 RRDEFTTVR--------------------ILTTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
+ DE T V ++T F + +G AL+DM+CKCG ++KA+ V
Sbjct: 145 KFDEGTIVSTLSACSALKNLEIGERIYRFVVTEFEMSVRIGNALVDMFCKCGCLDKARAV 204
Query: 119 FWKMLRKDKFTWTAMIVGLAISG------------------------HG-------DTAL 147
F M K+ WT+M+ G +G +G D AL
Sbjct: 205 FDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEAL 264
Query: 148 DMFSQMLRASIRLDEVTYVGVLSACTH 174
++F M A IR D V +L+ C
Sbjct: 265 ELFRCMQTAGIRPDNFVLVSLLTGCAQ 291
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 24/155 (15%)
Query: 41 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN------ 94
Q P +++ M+ F + L LF E++ + D FT +L +
Sbjct: 7 QTP--SLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIE 64
Query: 95 ---------------DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAI 139
D +V +L+ MY G +E +VF +M ++D +W +I
Sbjct: 65 GEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVG 124
Query: 140 SGHGDTALDMFSQMLRAS-IRLDEVTYVGVLSACT 173
+G + A+ +F +M + S ++ DE T V LSAC+
Sbjct: 125 NGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACS 159
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 22/130 (16%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D + T +V Y G ++ A + F ++ ERD WT++I G AL L+ EM+
Sbjct: 313 DKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLYYEME 372
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVG----------------------IALIDMYCKCGDV 112
+R D T V +LT N+ FV LID+ C+ G +
Sbjct: 373 NVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLIDLLCRAGLL 432
Query: 113 EKAQRVFWKM 122
++A+ + KM
Sbjct: 433 DEAEELIDKM 442
>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 161 bits (408), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 116/192 (60%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F +M NK ++SWTT+V GY G +D+A + F +MP++D V W AMI GY+ NR
Sbjct: 262 ARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRG 321
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
+EAL LF EMQ NI DE T V L+ + ++ +G AL
Sbjct: 322 KEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTAL 381
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG + KA +VF ++ ++ TWTA+I GLA+ G+ A+ FS+M+ S+ DE
Sbjct: 382 IDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDE 441
Query: 163 VTYVGVLSACTH 174
VT++G+LSAC H
Sbjct: 442 VTFLGLLSACCH 453
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 101/225 (44%), Gaps = 56/225 (24%)
Query: 6 EIFGNMK----NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVN 61
EI G++ + D+ ++ ++ G +D AR+ F + RD V W +MI+GY+R
Sbjct: 128 EILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRG 187
Query: 62 RFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGI 100
EAL +REM+ I+ DE T + ++++ + +
Sbjct: 188 WAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLAN 247
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISG------------------- 141
AL+DMY KCG++E A+++F M K +WT M+VG A SG
Sbjct: 248 ALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVP 307
Query: 142 ------------HGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
G AL +F++M +I DEVT V LSAC+
Sbjct: 308 WNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQ 352
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 22/147 (14%)
Query: 50 WTAMIDGYLRVNRFREALTLF-REMQTSNIRRDEFTTVRILTT----------------- 91
W I G+L REA+ L+ R +Q + D +T +
Sbjct: 74 WNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHV 133
Query: 92 ----FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
F++DIFV A+I + CGD++ A+++F K +D +W +MI G G AL
Sbjct: 134 LHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEAL 193
Query: 148 DMFSQMLRASIRLDEVTYVGVLSACTH 174
+ + +M I+ DEVT +GV+S+C
Sbjct: 194 NFYREMKVEGIKPDEVTMIGVVSSCAQ 220
>gi|357123975|ref|XP_003563682.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Brachypodium distachyon]
Length = 527
Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 114/193 (59%), Gaps = 21/193 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+++F M ++++ISWT +VSGY GQ+D AR F Q E+D ++WTAMI+ ++ F
Sbjct: 200 AVKLFEQMPSRNIISWTILVSGYAFAGQLDKARVLFYQCSEKDLIMWTAMINACVQHGCF 259
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
EAL+LFREMQ + D FT V +LT N D +G AL
Sbjct: 260 EEALSLFREMQMQRVEPDRFTIVTLLTCCANLGALDQGEWIHQFAVDRKMKVDAVLGTAL 319
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG V+K+ VF +M +D WT++I GLA +G AL++F M R+ ++ D
Sbjct: 320 IDMYAKCGHVKKSMEVFEQMQGRDTTAWTSIICGLATNGQAGRALELFEDMERSKVKPDS 379
Query: 163 VTYVGVLSACTHN 175
+T++GVLSAC H
Sbjct: 380 ITFIGVLSACCHG 392
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 88/181 (48%), Gaps = 24/181 (13%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D + ++++ Y G+ D+AR+ F +MP R V+W MI Y+R R+ A+ L EM+
Sbjct: 80 DAYTASSLMDMYTLLGRADVARKLFDEMPHRALVVWNMMIRCYVRCGRYTAAIALAEEME 139
Query: 75 TSNIRRDEFTTVRILT--------------------TFNNDIFVGIALIDMYCKCGDVEK 114
S + D+ T V +T F + V AL+DMY K G +E+
Sbjct: 140 RSGLTPDKVTLVTSVTVCSRAGDLSLGRRIHAYMDGVFGFSLPVANALLDMYMKNGCLEE 199
Query: 115 AQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
A ++F +M ++ +WT ++ G A +G D A +F Q D + + +++AC
Sbjct: 200 AVKLFEQMPSRNIISWTILVSGYAFAGQLDKARVLFYQCSEK----DLIMWTAMINACVQ 255
Query: 175 N 175
+
Sbjct: 256 H 256
Score = 38.9 bits (89), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 62/153 (40%), Gaps = 24/153 (15%)
Query: 42 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL------------ 89
MP RD L +I R F + ++ +++ + D FT +L
Sbjct: 9 MPLRDCNL---LIRTLARRGSFARVMAVYYDLRGRGLVADSFTYPFVLRAIGVLKLSVEG 65
Query: 90 ---------TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAIS 140
T F D + +L+DMY G + A+++F +M + W MI
Sbjct: 66 RKAHAAAMKTGFWWDAYTASSLMDMYTLLGRADVARKLFDEMPHRALVVWNMMIRCYVRC 125
Query: 141 GHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
G A+ + +M R+ + D+VT V ++ C+
Sbjct: 126 GRYTAAIALAEEMERSGLTPDKVTLVTSVTVCS 158
>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 116/193 (60%), Gaps = 21/193 (10%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A +F M+ ++++SW +V G+ G + AR+ F MP+RD + WT+MI GY + ++
Sbjct: 270 LAQGVFDRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQ 329
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIA 101
F +A+ LF+EM + ++ D+ T +L+ + DI+VG +
Sbjct: 330 FSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNS 389
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMYCKCG VEKA VF +M KD +WT++I GLA++G ++ALD+FSQMLR ++
Sbjct: 390 LIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPT 449
Query: 162 EVTYVGVLSACTH 174
T+VG+L AC H
Sbjct: 450 HGTFVGILLACAH 462
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 52/206 (25%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
++ Y GQ+ A++ F M +RD V W +I GY + N+++E L LF M +NI+
Sbjct: 156 ALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKA 215
Query: 81 DEFTTVRILTTFNN---------------------DIFVGIALIDMY------------- 106
D T V+I+ ++ D+++G LIDMY
Sbjct: 216 DAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVF 275
Query: 107 ------------------CKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALD 148
K G++ A+++F M ++D +WT+MI G + + A+
Sbjct: 276 DRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVK 335
Query: 149 MFSQMLRASIRLDEVTYVGVLSACTH 174
+F +M+ A ++ D+VT VLSAC H
Sbjct: 336 LFQEMMAAKVKPDKVTVASVLSACAH 361
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 69/161 (42%), Gaps = 21/161 (13%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT--- 91
A F Q+ V+W MI G + + EA+ ++ M I + T + +
Sbjct: 69 AHLVFNQIECPTLVVWNHMIRGLSQSDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACAR 128
Query: 92 ------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
F + +FV ALI MY CG + AQ++F ML +D +W +
Sbjct: 129 VSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTL 188
Query: 134 IVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
I G + L +F M A+I+ D VT V ++ AC+H
Sbjct: 189 ICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSH 229
>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 81/192 (42%), Positives = 116/192 (60%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F +M NK ++SWTT+V GY G +D+A + F +MP++D V W AMI GY+ NR
Sbjct: 234 ARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRG 293
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
+EAL LF EMQ NI DE T V L+ + ++ +G AL
Sbjct: 294 KEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTAL 353
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG + KA +VF ++ ++ TWTA+I GLA+ G+ A+ FS+M+ S+ DE
Sbjct: 354 IDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDE 413
Query: 163 VTYVGVLSACTH 174
VT++G+LSAC H
Sbjct: 414 VTFLGLLSACCH 425
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 20/162 (12%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ D+ ++ ++ G +D AR+ F + RD V W +MI+GY A LF
Sbjct: 183 DSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGY--CGNLESARKLFDS 240
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA 132
M N + ++ Y + G ++ A ++F +M KD W A
Sbjct: 241 MT------------------NKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNA 282
Query: 133 MIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
MI G + G AL +F++M +I DEVT V LSAC+
Sbjct: 283 MIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQ 324
>gi|242096286|ref|XP_002438633.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
gi|241916856|gb|EER90000.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
Length = 529
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/193 (40%), Positives = 115/193 (59%), Gaps = 21/193 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+++F M +++ISWT +VSGY GQ+D AR F Q ++D +LWTAMI+ ++ F
Sbjct: 200 AVKMFQQMPERNIISWTILVSGYAVAGQLDKARMLFYQCTQKDLILWTAMINACVQHGSF 259
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
EALTLFR+MQ + D+FT V +LT N D +G AL
Sbjct: 260 EEALTLFRDMQLQRVEPDKFTVVTLLTCCANIGALDQGEWIHQYAEGRNMKIDAVLGTAL 319
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I+MY KCG V+K+ ++F +M +D WTA+I GLA +G AL++F +M R+ + D
Sbjct: 320 IEMYSKCGHVDKSLQIFGRMQGRDAAAWTAIICGLATNGQASKALELFEEMQRSKTKPDG 379
Query: 163 VTYVGVLSACTHN 175
+T++GVL+AC H
Sbjct: 380 ITFIGVLNACCHG 392
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 24/181 (13%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D + ++++ Y G+VD AR+ F +MP+R VLW M+ Y+R RF A+ L EM+
Sbjct: 80 DAYTASSLLEMYTMLGRVDFARKVFDEMPQRFLVLWNMMMRCYIRCGRFTAAVALAEEME 139
Query: 75 TSNIRRDEFTTVRILTT--------------------FNNDIFVGIALIDMYCKCGDVEK 114
S D T V +T F + V AL+DMY K G +E+
Sbjct: 140 RSGATPDRVTLVTAVTACSRAGDLSLGRRIRAYMDGVFGFSLPVANALLDMYTKNGYLEE 199
Query: 115 AQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
A ++F +M ++ +WT ++ G A++G D A +F Q + D + + +++AC
Sbjct: 200 AVKMFQQMPERNIISWTILVSGYAVAGQLDKARMLFYQ----CTQKDLILWTAMINACVQ 255
Query: 175 N 175
+
Sbjct: 256 H 256
Score = 39.3 bits (90), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%)
Query: 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
+ T F D + +L++MY G V+ A++VF +M ++ W M+ G A+
Sbjct: 73 VKTGFRWDAYTASSLLEMYTMLGRVDFARKVFDEMPQRFLVLWNMMMRCYIRCGRFTAAV 132
Query: 148 DMFSQMLRASIRLDEVTYVGVLSACT 173
+ +M R+ D VT V ++AC+
Sbjct: 133 ALAEEMERSGATPDRVTLVTAVTACS 158
>gi|413943789|gb|AFW76438.1| hypothetical protein ZEAMMB73_890738 [Zea mays]
Length = 529
Score = 158 bits (400), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 78/193 (40%), Positives = 115/193 (59%), Gaps = 21/193 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+++F M +++ISWT +VSGY GQ+D AR +F Q ++D +LWT+MI+ ++ F
Sbjct: 200 AVKMFEQMPERNIISWTILVSGYGIAGQLDKARVFFYQCTQKDLILWTSMINACVQHGSF 259
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
EAL LFR+MQ + D+FT V +LT N D +G AL
Sbjct: 260 EEALILFRDMQLQRVEPDKFTVVTLLTCCANIGALDQGEWIHQYAESRNMKIDAVLGTAL 319
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I+MY KCG V+K+ ++F +M KD WTA+I GLA +G AL++F +M R+ + D
Sbjct: 320 IEMYSKCGHVDKSLQIFGRMQGKDAAAWTAIICGLATNGQASKALELFEEMQRSKTKPDG 379
Query: 163 VTYVGVLSACTHN 175
+T++GVLSAC H
Sbjct: 380 ITFIGVLSACCHG 392
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 85/181 (46%), Gaps = 24/181 (13%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D + +++ Y G+ D AR+ F +MP+R VLW M+ Y+R RF A+ L +M+
Sbjct: 80 DAYTACSLMEMYTMLGRADSARRVFDEMPQRFLVLWNMMMRCYIRCGRFTAAVALAVQME 139
Query: 75 TSNIRRDEFTTVRILTT--------------------FNNDIFVGIALIDMYCKCGDVEK 114
+ D T V +T F + V AL+DMY K G +E+
Sbjct: 140 SGGATPDRVTLVTAVTACSRAGDLNLGRRIHSYMDGVFGFSLPVANALLDMYTKNGYLEE 199
Query: 115 AQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
A ++F +M ++ +WT ++ G I+G D A F Q + D + + +++AC
Sbjct: 200 AVKMFEQMPERNIISWTILVSGYGIAGQLDKARVFFYQ----CTQKDLILWTSMINACVQ 255
Query: 175 N 175
+
Sbjct: 256 H 256
Score = 38.5 bits (88), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 59/153 (38%), Gaps = 24/153 (15%)
Query: 42 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL------------ 89
MP RD +I R F + ++ +++ + D +T +L
Sbjct: 9 MPLRD---CNVLIRTLARRGSFSRVMAVYYDLRARGLAADSYTYPFVLRAIGTMKLSVEG 65
Query: 90 ---------TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAIS 140
T F D + +L++MY G + A+RVF +M ++ W M+
Sbjct: 66 RKVHAAAVKTGFRWDAYTACSLMEMYTMLGRADSARRVFDEMPQRFLVLWNMMMRCYIRC 125
Query: 141 GHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
G A+ + QM D VT V ++AC+
Sbjct: 126 GRFTAAVALAVQMESGGATPDRVTLVTAVTACS 158
>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
Length = 1725
Score = 158 bits (399), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 115/193 (59%), Gaps = 21/193 (10%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
FAL++F M+ ++V+SWTT++SG I+ G + AR+ F ++P ++ V WTAMI+GY+R +
Sbjct: 178 FALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQ 237
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIA 101
EAL LF+ MQ NI +E+T V ++ +++G A
Sbjct: 238 PEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTA 297
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMY KCG ++ A VF M RK TW +MI L + G G AL++FS+M R +++ D
Sbjct: 298 LIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPD 357
Query: 162 EVTYVGVLSACTH 174
+T++GVL AC H
Sbjct: 358 AITFIGVLCACVH 370
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 93/176 (52%), Gaps = 22/176 (12%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-QTSNIR 79
T++ Y GQ ++++ F M E+D + W +MI Y + EAL +F M + +R
Sbjct: 1291 TLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVR 1350
Query: 80 RDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVEKAQRV 118
+ T +L + ++ VG ++IDMYCKCG VE A++
Sbjct: 1351 YNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKT 1410
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
F +M K+ +WTAM+ G + G ALD+F +M+RA ++ + +T+V VL+AC+H
Sbjct: 1411 FDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSH 1466
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 90/190 (47%), Gaps = 30/190 (15%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFR--- 71
D+ + ++ Y GQ+ AR F ++P R+ V WT+MI GY++ + AL LF+
Sbjct: 1176 DLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFL 1235
Query: 72 EMQT-----SNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDM 105
E +T +N+ D V +L+ F+ I VG L+D
Sbjct: 1236 EEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDA 1295
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR-ASIRLDEVT 164
Y KCG +++VF M KD +W +MI A SG AL++F M+R +R + VT
Sbjct: 1296 YAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVT 1355
Query: 165 YVGVLSACTH 174
VL AC H
Sbjct: 1356 LSAVLLACAH 1365
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
F D+FV ALIDMY KCG ++ A+ +F ++ ++ +WT+MI G + D AL +F
Sbjct: 1173 FETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFK 1232
Query: 152 QMLRA--------SIRLDEVTYVGVLSACT 173
L ++ LD V V VLSAC+
Sbjct: 1233 DFLEEETEVEDGNNVPLDSVVMVSVLSACS 1262
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 79/200 (39%), Gaps = 52/200 (26%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFT- 84
Y G++ A F Q+ W +I +AL L++ M I D+FT
Sbjct: 69 YSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTF 128
Query: 85 --TVRILTTF------------------NNDIFVGIALIDMYCK---------------- 108
++ T F + D+FV LID Y K
Sbjct: 129 PFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRV 188
Query: 109 ---------------CGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
CGD+++A+R+F ++ K+ +WTAMI G + + AL++F +M
Sbjct: 189 RNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRM 248
Query: 154 LRASIRLDEVTYVGVLSACT 173
+I +E T V ++ ACT
Sbjct: 249 QAENIFPNEYTMVSLIKACT 268
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 71/143 (49%), Gaps = 23/143 (16%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
+V T+I+ Y G+V++A++ F +M E++ WTAM+ GY R +EAL +F +M
Sbjct: 1387 NVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMV 1446
Query: 75 TSNIRRDEFTTVRILTTFNN------------------DIFVGI----ALIDMYCKCGDV 112
+ ++ + T V +L ++ DI GI ++D++ + G +
Sbjct: 1447 RAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCL 1506
Query: 113 EKAQRVFWKM-LRKDKFTWTAMI 134
+A + +M ++ D W +++
Sbjct: 1507 NEAYNLIKRMKMKPDFVVWGSLL 1529
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 62 RFREALTLFREMQT-SNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
R ++AL L + + ++R+ +R + +ND + LI +Y G + A +F+
Sbjct: 26 RAKKALFLLQNCKNFKHLRQIHAKIIR--SGLSNDQLLTRKLIHLYSTHGRIAYAILLFY 83
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
++ FTW +I I+G + AL ++ M+ I D+ T+ V+ ACT+
Sbjct: 84 QIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTN 137
>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 652
Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats.
Identities = 75/192 (39%), Positives = 112/192 (58%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F + K ++SWTT++ GY G +D AR+ F +MPERD W A++ GY++ R
Sbjct: 276 AKSVFEGIDKKTIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRG 335
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
+EAL LF +MQ + + D+ T V +L+ + + +G L
Sbjct: 336 KEALRLFHDMQEAMVEPDDITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLGTNL 395
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY KCG++EKA RVF ++ K+ TWTAMI GLA GH D A+ F +M+ ++ DE
Sbjct: 396 VDMYSKCGNIEKAIRVFKEIPEKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQPDE 455
Query: 163 VTYVGVLSACTH 174
+T++GVLSAC H
Sbjct: 456 ITFIGVLSACCH 467
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 55/210 (26%), Positives = 89/210 (42%), Gaps = 50/210 (23%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQM-----PERDYVLWTAMID 55
M A ++F +D++SW T++ GY+ RG A + F +M D V ++
Sbjct: 171 MAEARKLFDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVS 230
Query: 56 GYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKA 115
G ++ L +++ +R TVR++ ++DMY KCGD+E+A
Sbjct: 231 GSAQLRDLELGRRLHGYVESHGVR----CTVRLMNV----------VMDMYIKCGDLERA 276
Query: 116 QRVFWKMLRKDKFTWTAMIVGLAISG-------------------------------HGD 144
+ VF + +K +WT MIVG A G G
Sbjct: 277 KSVFEGIDKKTIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGK 336
Query: 145 TALDMFSQMLRASIRLDEVTYVGVLSACTH 174
AL +F M A + D++T V +LSAC+
Sbjct: 337 EALRLFHDMQEAMVEPDDITMVNLLSACSQ 366
Score = 42.7 bits (99), Expect = 0.059, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
F+ D+FV A + C + +A+++F +D +W +I G G AL+MF
Sbjct: 151 FHADVFVVNAAMHFLAVCSSMAEARKLFDGSHVRDLVSWNTLIGGYVRRGVPREALEMFW 210
Query: 152 QML-RASIRLDEVTYVGVLSA 171
+M+ ++ DEVT +GV+S
Sbjct: 211 RMVGDGAVTPDEVTMIGVVSG 231
>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
Length = 2598
Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats.
Identities = 76/193 (39%), Positives = 115/193 (59%), Gaps = 21/193 (10%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
FAL++F M+ ++V+SWTT++SG I+ G + AR+ F ++P ++ V WTAMI+GY+R +
Sbjct: 178 FALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQ 237
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIA 101
EAL LF+ MQ NI +E+T V ++ +++G A
Sbjct: 238 PEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTA 297
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMY KCG ++ A VF M RK TW +MI L + G G AL++FS+M R +++ D
Sbjct: 298 LIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPD 357
Query: 162 EVTYVGVLSACTH 174
+T++GVL AC H
Sbjct: 358 AITFIGVLCACVH 370
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 56/176 (31%), Positives = 92/176 (52%), Gaps = 22/176 (12%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-QTSNIR 79
T++ Y GQ ++++ F M E+D + W +MI Y + EAL +F M + +R
Sbjct: 2164 TLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVR 2223
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
+ T +L ++ VG ++IDMYCKCG VE A++
Sbjct: 2224 YNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKT 2283
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
F +M K+ +WTAM+ G + G ALD+F +M+RA ++ + +T+V VL+AC+H
Sbjct: 2284 FDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSH 2339
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 58/190 (30%), Positives = 88/190 (46%), Gaps = 30/190 (15%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM- 73
D+ + ++ Y GQ+ AR F ++P R+ V WT+MI GY++ + AL LF++
Sbjct: 2049 DLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFL 2108
Query: 74 -------QTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDM 105
+N+ D V +L+ F+ I VG L+D
Sbjct: 2109 EEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDA 2168
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR-ASIRLDEVT 164
Y KCG +++VF M KD +W +MI A SG AL++F M+R +R + VT
Sbjct: 2169 YAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVT 2228
Query: 165 YVGVLSACTH 174
VL AC H
Sbjct: 2229 LSAVLLACAH 2238
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
F D+FV ALIDMY KCG ++ A+ +F ++ ++ +WT+MI G + D AL +F
Sbjct: 2046 FETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFK 2105
Query: 152 QMLRA--------SIRLDEVTYVGVLSACT 173
L ++ LD V V VLSAC+
Sbjct: 2106 DFLEEETEVEDGNNVPLDSVVMVSVLSACS 2135
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 49/200 (24%), Positives = 79/200 (39%), Gaps = 52/200 (26%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFT- 84
Y G++ A F Q+ W +I +AL L++ M I D+FT
Sbjct: 69 YSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTF 128
Query: 85 --TVRILTTF------------------NNDIFVGIALIDMYCK---------------- 108
++ T F + D+FV LID Y K
Sbjct: 129 PFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRV 188
Query: 109 ---------------CGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
CGD+++A+R+F ++ K+ +WTAMI G + + AL++F +M
Sbjct: 189 RNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRM 248
Query: 154 LRASIRLDEVTYVGVLSACT 173
+I +E T V ++ ACT
Sbjct: 249 QAENIFPNEYTMVSLIKACT 268
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 69/138 (50%), Gaps = 23/138 (16%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T+I+ Y G+V++A++ F +M E++ WTAM+ GY R +EAL +F +M + ++
Sbjct: 2265 TSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVK 2324
Query: 80 RDEFTTVRILTT-------------FNN-----DIFVGI----ALIDMYCKCGDVEKAQR 117
+ T V +L FN DI GI ++D++ + G + +A
Sbjct: 2325 PNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYN 2384
Query: 118 VFWKM-LRKDKFTWTAMI 134
+ +M ++ D W +++
Sbjct: 2385 LIKRMKMKPDFVVWGSLL 2402
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 62 RFREALTLFREMQT-SNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
R ++AL L + + ++R+ +R + +ND + LI +Y G + A +F+
Sbjct: 26 RAKKALFLLQNCKNFKHLRQIHAKIIR--SGLSNDQLLTRKLIHLYSTHGRIAYAILLFY 83
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
++ FTW +I I+G + AL ++ M+ I D+ T+ V+ ACT+
Sbjct: 84 QIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTN 137
>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1288
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 113/193 (58%), Gaps = 21/193 (10%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A +F M++++++SW ++ GY G + AR+ F MP RD + WT+MI Y + +
Sbjct: 949 LARRVFDRMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQ 1008
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIA 101
F +A+ LF+EM + ++ DE T +L+ N DI+VG A
Sbjct: 1009 FGKAVRLFQEMMVTKVKPDEITVASVLSACAHIGALDVGEAVHEYIRKYDVNADIYVGNA 1068
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMYCKCG VEK VF +M ++D +WT++I GLA++G D+AL++FS MLR +R
Sbjct: 1069 LIDMYCKCGAVEKGLSVFEEMGKRDSVSWTSVIAGLAVNGSADSALNLFSLMLREGVRPT 1128
Query: 162 EVTYVGVLSACTH 174
T+VGVL AC H
Sbjct: 1129 HGTFVGVLLACAH 1141
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 97/214 (45%), Gaps = 52/214 (24%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ D+ ++ GY ++ AR+ F +M ERD V W ++I GY R R+ E L +F E
Sbjct: 827 DSDLFVSNALIHGYAGFCELGFARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEE 886
Query: 73 MQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIALIDMYCKCGD 111
M+ ++++ D T V+++ D+++G LIDMY +
Sbjct: 887 MRMADVKGDAVTMVKVVLACTVLGEWGVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSM 946
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISG-------------HGDT------------- 145
V+ A+RVF +M ++ +W AMI+G +G H D
Sbjct: 947 VDLARRVFDRMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQA 1006
Query: 146 -----ALDMFSQMLRASIRLDEVTYVGVLSACTH 174
A+ +F +M+ ++ DE+T VLSAC H
Sbjct: 1007 GQFGKAVRLFQEMMVTKVKPDEITVASVLSACAH 1040
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 25/191 (13%)
Query: 8 FGNMKNK----DVISWTTIVSGY-INRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
F NM + D IS ++ Y ++ + A + F Q+P W MI G+ + N+
Sbjct: 717 FSNMIKELLPTDPISIFNLLKSYALSPTNILKANELFRQIPRPTLSHWNIMIRGWSQTNQ 776
Query: 63 FREALTLFREMQT-----------------SNIRRDEFTTV--RILTT-FNNDIFVGIAL 102
EA+ + M + + I TTV R+L F++D+FV AL
Sbjct: 777 PIEAIRNYNLMYSQALFGNNLTYPFLLKACARISNVSCTTVHARVLKLGFDSDLFVSNAL 836
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I Y ++ A++VF +M +D +W ++I G L +F +M A ++ D
Sbjct: 837 IHGYAGFCELGFARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDA 896
Query: 163 VTYVGVLSACT 173
VT V V+ ACT
Sbjct: 897 VTMVKVVLACT 907
>gi|255543449|ref|XP_002512787.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547798|gb|EEF49290.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 480
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 116/195 (59%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ +A ++F M + V+SWTT V+G + G++D AR F +MP R+ V WTAMI+GY++
Sbjct: 181 LDYARKLFDKMAVRSVVSWTTFVAGLVACGELDTARAAFDEMPMRNVVSWTAMINGYVKN 240
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVG 99
R +EA LF+ MQ +N+R + FT V +L F +F+G
Sbjct: 241 QRPQEAFELFQRMQLANVRPNGFTLVGLLRACTELGSLELGRRIHEYALENGFKVGVFLG 300
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMY KCG +E A++VF +M +K TW +MI L + G G AL +F+QM A++R
Sbjct: 301 TALIDMYSKCGSIEDAKKVFEEMQKKSLATWNSMITSLGVHGFGKEALALFAQMEEANVR 360
Query: 160 LDEVTYVGVLSACTH 174
D +T+VGVL AC +
Sbjct: 361 PDAITFVGVLFACVN 375
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 75/195 (38%), Gaps = 52/195 (26%)
Query: 31 QVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFT------ 84
+VD A F Q+ W MI Y ++AL L+ M D+FT
Sbjct: 79 KVDYATLIFDQIQNPHTFTWNFMIRAYNYNGNSQQALLLYNLMICEGFSPDKFTFPFVIK 138
Query: 85 ---------------TVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT 129
I T F D F+ L+D+Y KCGD++ A+++F KM + +
Sbjct: 139 ACLDHSALDKGKEVHGFAIKTGFWKDTFLSNTLMDLYFKCGDLDYARKLFDKMAVRSVVS 198
Query: 130 WTAMIVGLAISGHGDT-------------------------------ALDMFSQMLRASI 158
WT + GL G DT A ++F +M A++
Sbjct: 199 WTTFVAGLVACGELDTARAAFDEMPMRNVVSWTAMINGYVKNQRPQEAFELFQRMQLANV 258
Query: 159 RLDEVTYVGVLSACT 173
R + T VG+L ACT
Sbjct: 259 RPNGFTLVGLLRACT 273
>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 614
Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 113/192 (58%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A EIF M K+V WT++V+GY+ GQ+D AR F + P RD VLWTAMI+GY++ NRF
Sbjct: 263 AREIFDAMTVKNVNCWTSMVTGYVICGQLDQARNLFERSPSRDIVLWTAMINGYVQFNRF 322
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
E + LF EMQ ++ D+F V +LT D VG AL
Sbjct: 323 EETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQGKWIHNYIDENRIKVDAVVGTAL 382
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I+MY KCG +EK+ +F + KD +WT++I GLA++G AL++F M ++ D+
Sbjct: 383 IEMYAKCGCIEKSFEIFNGLKEKDTTSWTSIICGLAMNGKPSEALELFKAMQTCGLKPDD 442
Query: 163 VTYVGVLSACTH 174
+T+V VLSAC+H
Sbjct: 443 ITFVAVLSACSH 454
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 74/148 (50%), Gaps = 21/148 (14%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT-SNIRRDEFT 84
Y G V+ Q F +MP+RD V W MI GY+R RF EA+ ++R M T SN + +E T
Sbjct: 153 YAELGLVEGFTQVFEEMPDRDAVSWNIMISGYVRCKRFEEAVDVYRRMWTESNEKPNEAT 212
Query: 85 TVRILTT--------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124
V L+ + +G AL+DMYCKCG V A+ +F M
Sbjct: 213 VVSTLSACAVLRNLELGKEIHDYIASELDLTTIMGNALLDMYCKCGHVSVAREIFDAMTV 272
Query: 125 KDKFTWTAMIVGLAISGHGDTALDMFSQ 152
K+ WT+M+ G I G D A ++F +
Sbjct: 273 KNVNCWTSMVTGYVICGQLDQARNLFER 300
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 84/187 (44%), Gaps = 22/187 (11%)
Query: 9 GNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALT 68
G +++D ++ S + G + A + F + + ++ MI +++ FR A++
Sbjct: 35 GLQQDRDTLNKLMAFSMDSSLGDFNYANRIFNYIHDPSLFIYNLMIKAFVKSGSFRSAIS 94
Query: 69 LFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIALIDMYC 107
LF++++ + D +T +L T D +V + +DMY
Sbjct: 95 LFQQLREHGVWPDNYTYPYVLKGIGCIGEVREGEKVHAFVVKTGLEFDPYVCNSFMDMYA 154
Query: 108 KCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM-LRASIRLDEVTYV 166
+ G VE +VF +M +D +W MI G + A+D++ +M ++ + +E T V
Sbjct: 155 ELGLVEGFTQVFEEMPDRDAVSWNIMISGYVRCKRFEEAVDVYRRMWTESNEKPNEATVV 214
Query: 167 GVLSACT 173
LSAC
Sbjct: 215 STLSACA 221
>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 681
Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats.
Identities = 76/189 (40%), Positives = 114/189 (60%), Gaps = 21/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F NM K V+SWTT+V GY G ++ A + F +MPE+D VLW A+I G+++ R +EA
Sbjct: 313 LFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEA 372
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDM 105
L LF EMQ S++ D+ T V L+ + ++ +G AL+DM
Sbjct: 373 LALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDM 432
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y KCG+++KA +VF +M ++ TWTA+I GLA+ G A+ FS+M+ + DE+T+
Sbjct: 433 YAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITF 492
Query: 166 VGVLSACTH 174
+GVLSAC H
Sbjct: 493 IGVLSACCH 501
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 59/234 (25%), Positives = 100/234 (42%), Gaps = 61/234 (26%)
Query: 2 GFAL-----EIFGNMK----NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTA 52
GF+L EI G++ + D+ I+ ++ G++ AR+ F + RD V W +
Sbjct: 167 GFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNS 226
Query: 53 MIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT--------------------- 91
+I+GY+R EA L+ +M N+ DE T + +++
Sbjct: 227 IINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMG 286
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISG---------- 141
N + + AL+DMY KC ++E A+ +F M +K +WT M++G A G
Sbjct: 287 LNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFN 346
Query: 142 ---------------------HGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
AL +F +M +S+ D++T V LSAC+
Sbjct: 347 EMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQ 400
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 9/166 (5%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE 65
+I N N + SW + GY+ A + M + +A+ D Y F+
Sbjct: 109 KILNNAANLNXFSWNMAIRGYVESENPINAVLLYRNMLRKG----SAIPDNYTYPLLFK- 163
Query: 66 ALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK 125
F T+N E I F++D+FV A+I + CG++ A+++F + +
Sbjct: 164 VCAGFSLSWTAN----EILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVR 219
Query: 126 DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
D +W ++I G G D A D++ +M ++ DEVT +GV+SA
Sbjct: 220 DLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSA 265
>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 681
Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats.
Identities = 76/189 (40%), Positives = 114/189 (60%), Gaps = 21/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F NM K V+SWTT+V GY G ++ A + F +MPE+D VLW A+I G+++ R +EA
Sbjct: 313 LFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEA 372
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDM 105
L LF EMQ S++ D+ T V L+ + ++ +G AL+DM
Sbjct: 373 LALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDM 432
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y KCG+++KA +VF +M ++ TWTA+I GLA+ G A+ FS+M+ + DE+T+
Sbjct: 433 YAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITF 492
Query: 166 VGVLSACTH 174
+GVLSAC H
Sbjct: 493 IGVLSACCH 501
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 59/234 (25%), Positives = 100/234 (42%), Gaps = 61/234 (26%)
Query: 2 GFAL-----EIFGNMK----NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTA 52
GF+L EI G++ + D+ I+ ++ G++ AR+ F + RD V W +
Sbjct: 167 GFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNS 226
Query: 53 MIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT--------------------- 91
+I+GY+R EA L+ +M N+ DE T + +++
Sbjct: 227 IINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMG 286
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISG---------- 141
N + + AL+DMY KC ++E A+ +F M +K +WT M++G A G
Sbjct: 287 LNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFN 346
Query: 142 ---------------------HGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
AL +F +M +S+ D++T V LSAC+
Sbjct: 347 EMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQ 400
Score = 62.0 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 9/166 (5%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE 65
+I N N +V SW + GY+ A + M + +A+ D Y F+
Sbjct: 109 KILNNAANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKG----SAIPDNYTYPLLFK- 163
Query: 66 ALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK 125
F T+N E I F++D+FV A+I + CG++ A+++F + +
Sbjct: 164 VCAGFSLSWTAN----EILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVR 219
Query: 126 DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
D +W ++I G G D A D++ +M ++ DEVT +GV+SA
Sbjct: 220 DLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSA 265
>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g22410, mitochondrial; Flags: Precursor
gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
Length = 681
Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats.
Identities = 74/192 (38%), Positives = 118/192 (61%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A IF N++ + ++SWTT++SGY G +D++R+ F M E+D VLW AMI G ++ R
Sbjct: 311 ARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRG 370
Query: 64 REALTLFREMQTSNIRRDEFTTVRILT---------------------TFNNDIFVGIAL 102
++AL LF+EMQTSN + DE T + L+ + + ++ +G +L
Sbjct: 371 QDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSL 430
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY KCG++ +A VF + ++ T+TA+I GLA+ G TA+ F++M+ A I DE
Sbjct: 431 VDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDE 490
Query: 163 VTYVGVLSACTH 174
+T++G+LSAC H
Sbjct: 491 ITFIGLLSACCH 502
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 48/197 (24%), Positives = 92/197 (46%), Gaps = 52/197 (26%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G ++ AR+ F + P RD V W +I+GY ++ +A+ +++ M++ ++ D+ T + ++
Sbjct: 205 GDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLV 264
Query: 90 TTFN-----------------NDIFVGI----ALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
++ + N + + I AL+DM+ KCGD+ +A+R+F + ++
Sbjct: 265 SSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIV 324
Query: 129 TWTAMIVGLAISG-------------------------------HGDTALDMFSQMLRAS 157
+WT MI G A G G AL +F +M ++
Sbjct: 325 SWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSN 384
Query: 158 IRLDEVTYVGVLSACTH 174
+ DE+T + LSAC+
Sbjct: 385 TKPDEITMIHCLSACSQ 401
Score = 52.4 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 43/73 (58%)
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
A I M+ CGD+E A++VF + +D +W +I G G + A+ ++ M ++
Sbjct: 196 ASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKP 255
Query: 161 DEVTYVGVLSACT 173
D+VT +G++S+C+
Sbjct: 256 DDVTMIGLVSSCS 268
>gi|414872719|tpg|DAA51276.1| TPA: methyltransferase small domain protein [Zea mays]
Length = 601
Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats.
Identities = 78/196 (39%), Positives = 111/196 (56%), Gaps = 21/196 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A IFG KD ISW T+VSG++N G +D+A ++F++ P RD + W A++ GY R
Sbjct: 275 MNAAKTIFGETGEKDAISWNTMVSGFVNAGMLDLASRFFSEAPSRDLISWNALLAGYARY 334
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTF---------------------NNDIFVG 99
F E + LF +M S + D+ T V +++ + D F+
Sbjct: 335 KSFNEVMKLFHDMVASCVNLDKVTAVTLISAATGKGSLNHAKSVHGWVVKEFDHQDAFLA 394
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+DMYCKCG+V+ A VF K L KD WTAMI GLA +GHG AL++F +M +
Sbjct: 395 SALVDMYCKCGNVKTAYYVFEKALDKDVTLWTAMISGLAFNGHGTEALELFCKMQTEVVA 454
Query: 160 LDEVTYVGVLSACTHN 175
+ VT + VLSAC+H+
Sbjct: 455 PNGVTLLAVLSACSHS 470
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 50/207 (24%), Positives = 83/207 (40%), Gaps = 54/207 (26%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
+++ YI+ G V+ A F D V M+ GY+ +AL FR+M + I
Sbjct: 161 SLIKMYIDAGDVETAELMFRSALVLDTVSCNIMLSGYVNEGCTLKALWFFRDMASRGIVV 220
Query: 81 DEFTTVRILT-----------------------TFNNDIFVGIALIDMYCKCGDVEKAQR 117
D++T V +LT ++ + + AL+DMY KCG + A+
Sbjct: 221 DQYTAVALLTCCGRLKNELIGRSVHGVIVRRMDAGDHGLILVNALLDMYAKCGRMNAAKT 280
Query: 118 VFWKMLRKDKFTWTAMIVGLAISGHGDTA------------------------------- 146
+F + KD +W M+ G +G D A
Sbjct: 281 IFGETGEKDAISWNTMVSGFVNAGMLDLASRFFSEAPSRDLISWNALLAGYARYKSFNEV 340
Query: 147 LDMFSQMLRASIRLDEVTYVGVLSACT 173
+ +F M+ + + LD+VT V ++SA T
Sbjct: 341 MKLFHDMVASCVNLDKVTAVTLISAAT 367
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 18/126 (14%)
Query: 65 EALTLFREMQTSNIRRDEFTTVRILTT------------------FNNDIFVGIALIDMY 106
+A L+R M S++ D+ T + +L + ++ +++ +LI MY
Sbjct: 107 QAAALYRSMLASSVLPDQQTFLALLRSVERLSAGRQVHAHVVVSGLHSRVYLRNSLIKMY 166
Query: 107 CKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYV 166
GDVE A+ +F L D + M+ G G AL F M I +D+ T V
Sbjct: 167 IDAGDVETAELMFRSALVLDTVSCNIMLSGYVNEGCTLKALWFFRDMASRGIVVDQYTAV 226
Query: 167 GVLSAC 172
+L+ C
Sbjct: 227 ALLTCC 232
>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 641
Score = 155 bits (392), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 114/193 (59%), Gaps = 21/193 (10%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A +F M+ K+++SW +++GY G + A++ F +MP R+ + WT MI G + N+
Sbjct: 311 LARRVFDRMQEKNIVSWNAMLTGYATAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQ 370
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIA 101
+AL LF+EM +N++ DE T +L+ +D++VG A
Sbjct: 371 CSDALKLFQEMMDANVKPDEITVSSVLSACSHLGLLDTGQTVHEYMCRHDIKSDVYVGNA 430
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMYCKCG V+KA VF M +KD +WT+MI+GLA++G D ++FSQMLR ++
Sbjct: 431 LIDMYCKCGVVDKALEVFHDMKKKDSVSWTSMILGLAVNGFVDNVFELFSQMLRDGLQPT 490
Query: 162 EVTYVGVLSACTH 174
+++G+L ACTH
Sbjct: 491 HGSFIGILLACTH 503
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 95/197 (48%), Gaps = 52/197 (26%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G++ A++ F +M +RD V W ++I GY + NRF+E L LF M+ +N+ D T V+++
Sbjct: 206 GELGYAQKVFDKMDDRDLVSWNSLICGYSQCNRFKEVLDLFNLMREANVTADSVTMVKVI 265
Query: 90 TT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
+ D+++G +LIDMY + G V+ A+RVF +M K+
Sbjct: 266 LACSYLCEDGVVDSMVKYIEDKHVDIDVYLGNSLIDMYGRRGLVDLARRVFDRMQEKNIV 325
Query: 129 TWTAMIVGLAISG-------------------------------HGDTALDMFSQMLRAS 157
+W AM+ G A +G AL +F +M+ A+
Sbjct: 326 SWNAMLTGYATAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSDALKLFQEMMDAN 385
Query: 158 IRLDEVTYVGVLSACTH 174
++ DE+T VLSAC+H
Sbjct: 386 VKPDEITVSSVLSACSH 402
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 85/185 (45%), Gaps = 23/185 (12%)
Query: 13 NKDVISWTTIVSGY-INRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFR 71
+K+ S + ++ Y ++R ++ A F Q+ + +++ +I G + EA+ ++
Sbjct: 86 HKNPKSMSNVIKSYALSRSHLNKANFAFIQIGQPTLLIFNYLIRGLSQSENPNEAIVMYS 145
Query: 72 E-MQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKC 109
+ M I D T + + F + +F+ +LI MY
Sbjct: 146 DLMYNQGILGDNLTFIYLFKACSRVKDVLHGQVFHVQVLKLGFGSYLFIENSLIRMYGYF 205
Query: 110 GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVL 169
G++ AQ+VF KM +D +W ++I G + LD+F+ M A++ D VT V V+
Sbjct: 206 GELGYAQKVFDKMDDRDLVSWNSLICGYSQCNRFKEVLDLFNLMREANVTADSVTMVKVI 265
Query: 170 SACTH 174
AC++
Sbjct: 266 LACSY 270
>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
Group]
gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
Length = 651
Score = 155 bits (391), Expect = 7e-36, Method: Composition-based stats.
Identities = 74/192 (38%), Positives = 115/192 (59%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F ++++ V+SWTT++ G+ G +D AR+ F +MPERD W A++ GY++ +
Sbjct: 282 AKSVFERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQC 341
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
+EAL+LF EMQ +++ DE T V +LT + + +G +L
Sbjct: 342 KEALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMGMWVHRYIEKHRLVFSVALGTSL 401
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG++EKA +F ++ K+ TWTAMI GLA GH + A++ F M+ + DE
Sbjct: 402 IDMYAKCGNIEKAIHIFKEIPEKNALTWTAMICGLANHGHANEAIEHFRTMIELGQKPDE 461
Query: 163 VTYVGVLSACTH 174
+T++GVLSAC H
Sbjct: 462 ITFIGVLSACCH 473
Score = 82.4 bits (202), Expect = 7e-14, Method: Composition-based stats.
Identities = 62/200 (31%), Positives = 87/200 (43%), Gaps = 54/200 (27%)
Query: 29 RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM--QTSNIRRDEFTTV 86
RG ++ AR+ F + P RD V W +I GY+R EAL LF M + + +R DE T +
Sbjct: 173 RGPMEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMI 232
Query: 87 ---------------RILTTFNNDIFVGI------ALIDMYCKCGDVEKAQRVFWKMLRK 125
R L F + V AL+DMY KCG +E A+ VF ++ +
Sbjct: 233 AAVSGCGQMRDLELGRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHR 292
Query: 126 DKFTWTAMIVGLAISGHGD-------------------------------TALDMFSQML 154
+WT MIVG A G D AL +F +M
Sbjct: 293 TVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQ 352
Query: 155 RASIRLDEVTYVGVLSACTH 174
AS+ DE+T V +L+AC+
Sbjct: 353 EASVVPDEITMVNLLTACSQ 372
Score = 44.7 bits (104), Expect = 0.016, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
++D+FV A G +E A+R+F + +D +W +I G G+ AL++F
Sbjct: 156 LDSDVFVVNAATHFLSIRGPMEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFW 215
Query: 152 QMLR--ASIRLDEVTYVGVLSAC 172
+M+ A +R DEVT + +S C
Sbjct: 216 RMVAEDAVVRPDEVTMIAAVSGC 238
>gi|226531396|ref|NP_001147435.1| methyltransferase small domain [Zea mays]
gi|195611352|gb|ACG27506.1| methyltransferase small domain [Zea mays]
Length = 601
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 78/196 (39%), Positives = 111/196 (56%), Gaps = 21/196 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A IFG KD ISW T+VSG++N G +D+A ++F++ P RD + W A++ GY R
Sbjct: 275 MNAAKTIFGEAGEKDAISWNTMVSGFVNAGMLDLASRFFSEAPSRDLISWNALLAGYARY 334
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTF---------------------NNDIFVG 99
F E + LF +M S + D+ T V +++ + D F+
Sbjct: 335 KGFNEVMKLFHDMLASCVNLDKVTAVTLISAAAGKGSLNHAKSVHGWVVKEFGHQDAFLA 394
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+DMYCKCG+V+ A VF K L KD WTAMI GLA +GHG AL++F +M +
Sbjct: 395 SALVDMYCKCGNVKIAYYVFEKALDKDVTLWTAMISGLAFNGHGTEALELFWKMQTEVVA 454
Query: 160 LDEVTYVGVLSACTHN 175
+ VT + VLSAC+H+
Sbjct: 455 PNGVTLLAVLSACSHS 470
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 82/205 (40%), Gaps = 54/205 (26%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
+++ YI+ G V+ A F D V M+ GY+ +AL FR+M + I
Sbjct: 161 SLIKMYIDAGDVETAELMFRSALVLDTVSCNIMLSGYVNEGCTLKALWFFRDMASRGIVV 220
Query: 81 DEFTTVRILT-----------------------TFNNDIFVGIALIDMYCKCGDVEKAQR 117
D++T V +LT ++ + + AL+DMY KCG + A+
Sbjct: 221 DQYTAVALLTCCGRLKNELIGRSVHGVIVRRMDAGDHGLILVNALLDMYAKCGRMNAAKT 280
Query: 118 VFWKMLRKDKFTWTAMIVGLAISGHGDTA------------------------------- 146
+F + KD +W M+ G +G D A
Sbjct: 281 IFGEAGEKDAISWNTMVSGFVNAGMLDLASRFFSEAPSRDLISWNALLAGYARYKGFNEV 340
Query: 147 LDMFSQMLRASIRLDEVTYVGVLSA 171
+ +F ML + + LD+VT V ++SA
Sbjct: 341 MKLFHDMLASCVNLDKVTAVTLISA 365
Score = 46.2 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 44/192 (22%), Positives = 82/192 (42%), Gaps = 25/192 (13%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A+E F + ++ + T+VS + ++ Q+F P + ++ M+
Sbjct: 46 LGLAMETFPMSR---LLHYATVVSSPRLTREAELLFQHFT--PRPNLYIYNLMLSAAAAR 100
Query: 61 NRFR--EALTLFREMQTSNIRRDEFTTVRILTT------------------FNNDIFVGI 100
+ +A L+R M S++ D+ T + +L + ++ +++
Sbjct: 101 DSSSSPQAAALYRSMLASSVLPDQQTFLALLRSVEHLSAGRQVHAHVVVSGLHSRVYLRN 160
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
+LI MY GDVE A+ +F L D + M+ G G AL F M I +
Sbjct: 161 SLIKMYIDAGDVETAELMFRSALVLDTVSCNIMLSGYVNEGCTLKALWFFRDMASRGIVV 220
Query: 161 DEVTYVGVLSAC 172
D+ T V +L+ C
Sbjct: 221 DQYTAVALLTCC 232
>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 593
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 111/193 (57%), Gaps = 21/193 (10%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
FA +F MK K+++SW ++ GY G + A++ F +MP RD + WT+MI GY +
Sbjct: 267 FAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQ 326
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIA 101
EA+ LF+EM S ++ DE T L+ +D+FVG +
Sbjct: 327 HAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNS 386
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMYCKCG VEKA +VF M +D +WT++I GLA++G ++AL++F QML+ I
Sbjct: 387 LIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGICPT 446
Query: 162 EVTYVGVLSACTH 174
T+VGVL AC H
Sbjct: 447 HGTFVGVLLACAH 459
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 100/207 (48%), Gaps = 52/207 (25%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
++ Y+ G++ +A++ F M ERD V W ++I GY + NRF++ L LFREMQ N+R
Sbjct: 152 NALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVR 211
Query: 80 RDEFTTVRIL--TTFNN-------------------DIFVGIALIDMYCKCGDVEKAQRV 118
D T ++ + T F + D+++G LIDMY + G ++ A RV
Sbjct: 212 ADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRV 271
Query: 119 FWKMLRK-------------------------------DKFTWTAMIVGLAISGHGDTAL 147
F++M K D +WT+MI+G +++ A+
Sbjct: 272 FYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAV 331
Query: 148 DMFSQMLRASIRLDEVTYVGVLSACTH 174
+F +M+ + ++ DE+T LSAC H
Sbjct: 332 KLFQEMMVSMVKPDEITVATALSACAH 358
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 22/179 (12%)
Query: 15 DVISWTTIVSGY-INRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
D S + ++ Y ++ + A F Q+ ++W MI G + +R +A+ + M
Sbjct: 45 DPSSISEVIKHYALSPQSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTM 104
Query: 74 --------------------QTSNIRRDEFTTVRILTT-FNNDIFVGIALIDMYCKCGDV 112
+ S++R+ + V + F + +FV ALI MY G++
Sbjct: 105 YYKGIQGSHLTFIFLFKSCARVSDVRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFGEL 164
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
AQ+VF ML +D +W ++I G LD+F +M ++R D VT + +SA
Sbjct: 165 AMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISA 223
>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 566
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 111/193 (57%), Gaps = 21/193 (10%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A +F M+ ++++SW ++ GY G + AR+ F M +RD + WT MI Y + +
Sbjct: 231 LARGVFDQMQWRNLVSWNAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQ 290
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIA 101
F EAL LF+EM S ++ DE T +L+ + DI+VG A
Sbjct: 291 FTEALRLFKEMMESKVKPDEITVASVLSACAHTGSLDVGEAAHDYIQKYDVKADIYVGNA 350
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMYCKCG VEKA VF +M +KD +WT++I GLA++G D+ALD FS+MLR ++
Sbjct: 351 LIDMYCKCGVVEKALEVFKEMRKKDSVSWTSIISGLAVNGFADSALDYFSRMLREVVQPS 410
Query: 162 EVTYVGVLSACTH 174
+VG+L AC H
Sbjct: 411 HGAFVGILLACAH 423
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 96/207 (46%), Gaps = 52/207 (25%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+++ Y + G + +A++ F +MPERD V W +++ GY + RFRE L +F M+ + ++
Sbjct: 116 NALINMYGSCGHLGLAQKVFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVK 175
Query: 80 RDEFTTVRILTTF------------------NN---DIFVGIALIDM------------- 105
D T V+++ NN D+++G LIDM
Sbjct: 176 GDAVTMVKVVLACTSLGEWGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGV 235
Query: 106 ------------------YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
Y K G++ A+ +F M ++D +WT MI + +G AL
Sbjct: 236 FDQMQWRNLVSWNAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEAL 295
Query: 148 DMFSQMLRASIRLDEVTYVGVLSACTH 174
+F +M+ + ++ DE+T VLSAC H
Sbjct: 296 RLFKEMMESKVKPDEITVASVLSACAH 322
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 78/185 (42%), Gaps = 21/185 (11%)
Query: 10 NMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 69
N++ + I S ++ + A F Q+ W MI G+ ++ EA+ +
Sbjct: 5 NLRTDPSTIYNLIKSYALSPSTILKAHNLFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRM 64
Query: 70 FREMQTSNIRRDEFTTV--------------------RILTT-FNNDIFVGIALIDMYCK 108
+ M + + T + R+L F + ++V ALI+MY
Sbjct: 65 YNLMYRQGLLGNNLTYLFLFKACARVPDVSCGSTIHARVLKLGFESHLYVSNALINMYGS 124
Query: 109 CGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGV 168
CG + AQ+VF +M +D +W +++ G L +F M A ++ D VT V V
Sbjct: 125 CGHLGLAQKVFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKV 184
Query: 169 LSACT 173
+ ACT
Sbjct: 185 VLACT 189
>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
Length = 575
Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats.
Identities = 75/192 (39%), Positives = 115/192 (59%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M+ +D++SW T++ GY G+VD+AR+ F M +RD W++M+ Y + R
Sbjct: 125 ARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRS 184
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
++AL L+REM+ + + D T V +L+ ++ D+ +G AL
Sbjct: 185 KDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTAL 244
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCGD+E + RVF M KD TW++MI+GLA G G AL +FS+ML ++ +E
Sbjct: 245 IDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNE 304
Query: 163 VTYVGVLSACTH 174
VT++GVL +CTH
Sbjct: 305 VTFIGVLISCTH 316
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 18/119 (15%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN 94
AR + D + TA+++ Y + R A F E RRD
Sbjct: 63 ARALKSGFAAADLFVRTALVEAYAKAGRADLARAAFDEAP----RRD------------- 105
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+F+ ++ Y G+V +A+RVF M +D +W MI G A++G D A ++F+ M
Sbjct: 106 -VFLCNVMLAAYVTRGEVAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGM 163
>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
Length = 668
Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats.
Identities = 77/189 (40%), Positives = 116/189 (61%), Gaps = 21/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F NM+ K V+SWTT++ GY G +D+A + F MPE++ V W AMI ++ N EA
Sbjct: 312 LFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEA 371
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDM 105
L LFREMQ SN++ D+ T + L+ + D+ +G ALIDM
Sbjct: 372 LELFREMQWSNMKPDKVTMLHCLSACSQLGALDTGMWTHNYIKKHNLSLDVALGTALIDM 431
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y KCG++ KA +VF +M R++ TWTA+I GLA+ G+ + A+ FS+M+ + + DE+T+
Sbjct: 432 YAKCGNMTKALQVFNEMPRRNSLTWTAIIGGLALYGNVNDAIFYFSKMIDSGLMPDEITF 491
Query: 166 VGVLSACTH 174
+GVL+AC H
Sbjct: 492 LGVLTACCH 500
Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 63/230 (27%), Positives = 109/230 (47%), Gaps = 58/230 (25%)
Query: 1 MGFALEIFGNMK----NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDG 56
MGF EI G + +KD+ + I+ ++ G+ +A + F + RD V W ++I+G
Sbjct: 172 MGF--EILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLING 229
Query: 57 YLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNND 95
Y+R + REA+ ++++M T +++ DE T + +++ N
Sbjct: 230 YVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLK 289
Query: 96 IFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDT---------- 145
I + AL+DMY KCGD+E + +F M +K +WT MIVG A +G D
Sbjct: 290 ISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPE 349
Query: 146 ---------------------ALDMFSQMLRASIRLDEVTYVGVLSACTH 174
AL++F +M ++++ D+VT + LSAC+
Sbjct: 350 KNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQ 399
>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 552
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 111/193 (57%), Gaps = 21/193 (10%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
FA +F MK K+++SW ++ GY G + A++ F +MP RD + WT+MI GY +
Sbjct: 226 FAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQ 285
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIA 101
EA+ LF+EM S ++ DE T L+ +D+FVG +
Sbjct: 286 HAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNS 345
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMYCKCG VEKA +VF M +D +WT++I GLA++G ++AL++F QML+ I
Sbjct: 346 LIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGICPT 405
Query: 162 EVTYVGVLSACTH 174
T+VGVL AC H
Sbjct: 406 HGTFVGVLLACAH 418
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 100/207 (48%), Gaps = 52/207 (25%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
++ Y+ G++ +A++ F M ERD V W ++I GY + NRF++ L LFREMQ N+R
Sbjct: 111 NALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVR 170
Query: 80 RDEFTTVRIL--TTFNN-------------------DIFVGIALIDMYCKCGDVEKAQRV 118
D T ++ + T F + D+++G LIDMY + G ++ A RV
Sbjct: 171 ADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRV 230
Query: 119 FWKMLRK-------------------------------DKFTWTAMIVGLAISGHGDTAL 147
F++M K D +WT+MI+G +++ A+
Sbjct: 231 FYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAV 290
Query: 148 DMFSQMLRASIRLDEVTYVGVLSACTH 174
+F +M+ + ++ DE+T LSAC H
Sbjct: 291 KLFQEMMVSMVKPDEITVATALSACAH 317
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 22/179 (12%)
Query: 15 DVISWTTIVSGY-INRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
D S + ++ Y ++ + A F Q+ ++W MI G + +R +A+ + M
Sbjct: 4 DPSSISEVIKHYALSPQSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTM 63
Query: 74 --------------------QTSNIRRDEFTTVRILTT-FNNDIFVGIALIDMYCKCGDV 112
+ S++R+ + V + F + FV ALI MY G++
Sbjct: 64 YYKGIQGSHLTFIFLFKSCARVSDVRQGQMVRVHSMKLGFESXSFVSNALIHMYVCFGEL 123
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
AQ+VF ML +D +W ++I G LD+F +M ++R D VT + +SA
Sbjct: 124 AMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISA 182
>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 640
Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 116/195 (59%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ A ++F M +D++SW T++ G+ + G V A++ F + ERD + W++MI Y +
Sbjct: 187 INLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKA 246
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVG 99
+ EAL LF EMQ +N+ D+ T V +L+ + D+ +G
Sbjct: 247 RQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLG 306
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
+L+DMY KCGD++ + RVF M +D F W+AMI+GLA G G+ ALD FS+M+ I+
Sbjct: 307 TSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIK 366
Query: 160 LDEVTYVGVLSACTH 174
++VT++GVLSAC+H
Sbjct: 367 PNDVTFIGVLSACSH 381
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN-IRRDEFTTVRILTT-- 91
AR F ++P D +W MI YL +E+++LF +M+ I D ++ ++
Sbjct: 57 ARSVFDEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACG 116
Query: 92 -------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA 132
+D+FV ALI+MY K GD+E A+ + +M D +
Sbjct: 117 RLKDPGNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNV 176
Query: 133 MIVGLAISGHGDTALDMFSQM 153
++ G + A D+F +M
Sbjct: 177 LLAEYVRVGEINLAHDLFDRM 197
>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
Length = 492
Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 115/192 (59%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +D++SW T++ GY RG+V +AR+ F +RD W++MI Y + R
Sbjct: 42 ARKVFDGMPMRDLVSWNTMIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRS 101
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
+EAL L+REM ++I D T V +++ ++ D+ +G AL
Sbjct: 102 KEALELWREMHAASIIPDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTAL 161
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCGD+E AQRVF +M KD TW++MI+GLA G G +L +FS+M+ ++ +
Sbjct: 162 IDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNG 221
Query: 163 VTYVGVLSACTH 174
VT+VGVL ACTH
Sbjct: 222 VTFVGVLIACTH 233
>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 584
Score = 151 bits (382), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 105/192 (54%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +FG M ++V SW +V GY G VDIAR F MPERD V W +MI Y++ R
Sbjct: 211 ARRLFGEMPERNVGSWNAVVGGYSKLGHVDIARSLFDLMPERDVVSWGSMISAYVQNGRA 270
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
EAL LF+EM + + D IL+ ND+F+ AL
Sbjct: 271 AEALELFKEMMLAGVSADSIIITSILSACAQIGALDMGRWIHAYMKRSKLRNDVFLDTAL 330
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY KCG ++ A VF M RK+ +W AM+ GLAI GHG AL++F QM + ++
Sbjct: 331 VDMYAKCGCIDTAFGVFNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQMESTGVGPND 390
Query: 163 VTYVGVLSACTH 174
+T+V VLSAC+H
Sbjct: 391 ITFVAVLSACSH 402
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 18/160 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV + ++ Y+ G + A F +MP + V W MI G A LF EM
Sbjct: 160 DVFTRNALIHMYLKCGSITDAHLLFDEMPNHNVVTWNTMITGCFGCGDTERARRLFGEMP 219
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
N+ ++N A++ Y K G V+ A+ +F M +D +W +MI
Sbjct: 220 ERNV-----------GSWN-------AVVGGYSKLGHVDIARSLFDLMPERDVVSWGSMI 261
Query: 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+G AL++F +M+ A + D + +LSAC
Sbjct: 262 SAYVQNGRAAEALELFKEMMLAGVSADSIIITSILSACAQ 301
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 22/175 (12%)
Query: 5 LEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFR 64
L I G +K+ I+ T+ S ++ +D A F + D WT MI G++
Sbjct: 50 LIITGQIKDT-FIATKTVESYAVSARNIDYAFWVFVGINYPDSYSWTTMIRGFVEAKNPE 108
Query: 65 EALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALI 103
+AL + M+ + ++FT + +L F D+F ALI
Sbjct: 109 KALEFYGLMRQRGVELNKFTFLFVLKAYGLRPSYQEGRIVHGKLVKVGFCYDVFTRNALI 168
Query: 104 DMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
MY KCG + A +F +M + TW MI G G + A +F +M ++
Sbjct: 169 HMYLKCGSITDAHLLFDEMPNHNVVTWNTMITGCFGCGDTERARRLFGEMPERNV 223
>gi|242038163|ref|XP_002466476.1| hypothetical protein SORBIDRAFT_01g008465 [Sorghum bicolor]
gi|241920330|gb|EER93474.1| hypothetical protein SORBIDRAFT_01g008465 [Sorghum bicolor]
Length = 599
Score = 151 bits (382), Expect = 9e-35, Method: Composition-based stats.
Identities = 77/195 (39%), Positives = 110/195 (56%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +FG KD ISW T+VSG+ N G +D+A ++F++ P RD + W A++ GY R
Sbjct: 278 MNAAERVFGEASEKDGISWNTMVSGFANAGMLDLASRFFSEAPSRDLISWNALLAGYARY 337
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTF---------------------NNDIFVG 99
F E + LF +M S + D+ T V +++ + D F+
Sbjct: 338 KGFNEVMKLFHDMLASCVNPDKVTAVTLISVAAGKGSLNHAKSIHGWVVKQFGHQDAFLA 397
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+DM+CKCG+V+ A VF K L KD WTAMI GLA +GHG AL++F +M +I
Sbjct: 398 SALVDMHCKCGNVKVAYYVFEKALDKDVTLWTAMISGLAFNGHGTEALELFWKMQTEAIA 457
Query: 160 LDEVTYVGVLSACTH 174
+ VT + VLSAC+H
Sbjct: 458 PNGVTLLAVLSACSH 472
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 46/155 (29%), Positives = 69/155 (44%), Gaps = 23/155 (14%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
+++ YI+ G V+ A F D V M+ GY+ +AL FR+M + I
Sbjct: 164 SLIKMYIDAGDVETAELMFRSALVLDTVSCNIMLSGYVNEGCSLKALCFFRDMASRGIVA 223
Query: 81 DEFTTVRILT-----------------------TFNNDIFVGIALIDMYCKCGDVEKAQR 117
D +T V +LT +N + + AL+DMY KCG + A+R
Sbjct: 224 DRYTAVALLTCCGRLKTVLLGRSVHGVIVRRMDAGDNWLILVNALLDMYAKCGRMNAAER 283
Query: 118 VFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
VF + KD +W M+ G A +G D A FS+
Sbjct: 284 VFGEASEKDGISWNTMVSGFANAGMLDLASRFFSE 318
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 18/126 (14%)
Query: 65 EALTLFREMQTSNIRRDEFTTVRILTT------------------FNNDIFVGIALIDMY 106
+A ++R M S++ DE T + +L + F++ +++ +LI MY
Sbjct: 110 QAAAVYRSMLASSVLPDEQTFLALLRSVERLSAGRQVHAHVVVSGFHSRVYLRNSLIKMY 169
Query: 107 CKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYV 166
GDVE A+ +F L D + M+ G G AL F M I D T V
Sbjct: 170 IDAGDVETAELMFRSALVLDTVSCNIMLSGYVNEGCSLKALCFFRDMASRGIVADRYTAV 229
Query: 167 GVLSAC 172
+L+ C
Sbjct: 230 ALLTCC 235
>gi|125587880|gb|EAZ28544.1| hypothetical protein OsJ_12524 [Oryza sativa Japonica Group]
Length = 559
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 77/195 (39%), Positives = 108/195 (55%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A+ +F +D ISW T+V+G+ N G +D+A +YF + P RD + W A++ GY R
Sbjct: 165 MNTAMRVFDEAGERDGISWNTMVAGFANAGLLDLASKYFGEAPARDIISWNALLAGYARY 224
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILT------TFNN---------------DIFVG 99
F + LF +M S++ D+ T V +++ T N+ D F+
Sbjct: 225 EEFSATMILFHDMLASSVIPDKVTAVTLISAVAGKGTLNSARSVHGWVVKEHGTQDSFLA 284
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+DMYCKCG ++ A VF K + KD WTAMI GLA GHGD ALD+F +M
Sbjct: 285 SALVDMYCKCGSIKLAYAVFEKAVDKDVTLWTAMISGLAFHGHGDVALDLFWKMQAEGTE 344
Query: 160 LDEVTYVGVLSACTH 174
+ VT V VLSAC+H
Sbjct: 345 PNGVTLVAVLSACSH 359
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 23/155 (14%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
+++ Y++ G V+ A F P D V M+ GY++ +AL FR M + I
Sbjct: 51 SLIKMYLDAGDVEAAEAMFRCAPTADAVSCNIMLSGYVKGGCSGKALRFFRGMASRGIGV 110
Query: 81 DEFTTVRILT-----------------------TFNNDIFVGIALIDMYCKCGDVEKAQR 117
D++T V +L + + + AL+DMY KCG++ A R
Sbjct: 111 DQYTAVALLACCGRLKKAVLGRSVHGVVVRRIGVADRGLILSNALLDMYAKCGEMNTAMR 170
Query: 118 VFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
VF + +D +W M+ G A +G D A F +
Sbjct: 171 VFDEAGERDGISWNTMVAGFANAGLLDLASKYFGE 205
Score = 43.9 bits (102), Expect = 0.024, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 41/85 (48%)
Query: 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
++T ++ +++ +LI MY GDVE A+ +F D + M+ G G AL
Sbjct: 38 VVTGLHSRVYLRNSLIKMYLDAGDVEAAEAMFRCAPTADAVSCNIMLSGYVKGGCSGKAL 97
Query: 148 DMFSQMLRASIRLDEVTYVGVLSAC 172
F M I +D+ T V +L+ C
Sbjct: 98 RFFRGMASRGIGVDQYTAVALLACC 122
>gi|30017569|gb|AAP12991.1| hypothetical protein [Oryza sativa Japonica Group]
gi|40539031|gb|AAR87288.1| putative PPR repeat containing protein [Oryza sativa Japonica
Group]
gi|108711017|gb|ABF98812.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 676
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 77/195 (39%), Positives = 108/195 (55%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A+ +F +D ISW T+V+G+ N G +D+A +YF + P RD + W A++ GY R
Sbjct: 282 MNTAMRVFDEAGERDGISWNTMVAGFANAGLLDLASKYFGEAPARDIISWNALLAGYARY 341
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILT------TFNN---------------DIFVG 99
F + LF +M S++ D+ T V +++ T N+ D F+
Sbjct: 342 EEFSATMILFHDMLASSVIPDKVTAVTLISAVAGKGTLNSARSVHGWVVKEHGTQDSFLA 401
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+DMYCKCG ++ A VF K + KD WTAMI GLA GHGD ALD+F +M
Sbjct: 402 SALVDMYCKCGSIKLAYAVFEKAVDKDVTLWTAMISGLAFHGHGDVALDLFWKMQAEGTE 461
Query: 160 LDEVTYVGVLSACTH 174
+ VT V VLSAC+H
Sbjct: 462 PNGVTLVAVLSACSH 476
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 23/155 (14%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
+++ Y++ G V+ A F P D V M+ GY++ +AL FR M + I
Sbjct: 168 SLIKMYLDAGDVEAAEAMFRCAPTADAVSCNIMLSGYVKGGCSGKALRFFRGMASRGIGV 227
Query: 81 DEFTTVRILT-----------------------TFNNDIFVGIALIDMYCKCGDVEKAQR 117
D++T V +L + + + AL+DMY KCG++ A R
Sbjct: 228 DQYTAVALLACCGRLKKAVLGRSVHGVVVRRIGVADRGLILSNALLDMYAKCGEMNTAMR 287
Query: 118 VFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
VF + +D +W M+ G A +G D A F +
Sbjct: 288 VFDEAGERDGISWNTMVAGFANAGLLDLASKYFGE 322
Score = 43.9 bits (102), Expect = 0.024, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 41/85 (48%)
Query: 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
++T ++ +++ +LI MY GDVE A+ +F D + M+ G G AL
Sbjct: 155 VVTGLHSRVYLRNSLIKMYLDAGDVEAAEAMFRCAPTADAVSCNIMLSGYVKGGCSGKAL 214
Query: 148 DMFSQMLRASIRLDEVTYVGVLSAC 172
F M I +D+ T V +L+ C
Sbjct: 215 RFFRGMASRGIGVDQYTAVALLACC 239
>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 537
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 113/194 (58%), Gaps = 21/194 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +F N+DV++WT +++GY GQV +ARQ F +MPE++ V W+AMI GY ++
Sbjct: 164 MDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQI 223
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFN---------------------NDIFVG 99
FREAL LF +MQ + R + V LT D +G
Sbjct: 224 GLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILG 283
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMY KCG VE A RVF +ML +D F +T++I GLA GH TA++MF++M +
Sbjct: 284 TALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVC 343
Query: 160 LDEVTYVGVLSACT 173
+EVT++ +LSAC+
Sbjct: 344 PNEVTFICLLSACS 357
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 67/162 (41%), Gaps = 23/162 (14%)
Query: 15 DVISWTTIVSGYINRGQVDIARQY--FAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
D + I+S Q DI+ Y F +P R +W M+ + L+L++
Sbjct: 44 DPFAAGRIISFCAVSAQGDISHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATVLSLYKY 103
Query: 73 MQTSNIRRDEFTTVRILTTFN--NDIFVGI-------------------ALIDMYCKCGD 111
M ++ + +T +L +D+ GI L+ +Y C
Sbjct: 104 MLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNC 163
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
++ A+R+F + +D TWTA+I G A SG A +F +M
Sbjct: 164 MDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEM 205
>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
Length = 512
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 113/194 (58%), Gaps = 21/194 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +F N+DV++WT +++GY GQV +ARQ F +MPE++ V W+AMI GY ++
Sbjct: 139 MDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQI 198
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFN---------------------NDIFVG 99
FREAL LF +MQ + R + V LT D +G
Sbjct: 199 GLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILG 258
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMY KCG VE A RVF +ML +D F +T++I GLA GH TA++MF++M +
Sbjct: 259 TALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVC 318
Query: 160 LDEVTYVGVLSACT 173
+EVT++ +LSAC+
Sbjct: 319 PNEVTFICLLSACS 332
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 67/162 (41%), Gaps = 23/162 (14%)
Query: 15 DVISWTTIVSGYINRGQVDIARQY--FAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
D + I+S Q DI+ Y F +P R +W M+ + L+L++
Sbjct: 19 DPFAAGRIISFCAVSAQGDISHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATVLSLYKY 78
Query: 73 MQTSNIRRDEFTTVRILTTFN--NDIFVGI-------------------ALIDMYCKCGD 111
M ++ + +T +L +D+ GI L+ +Y C
Sbjct: 79 MLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNC 138
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
++ A+R+F + +D TWTA+I G A SG A +F +M
Sbjct: 139 MDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEM 180
>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Vitis vinifera]
Length = 464
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 112/195 (57%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A ++F M ++ SW ++ GY V+ A F+QMP RD + WT MI Y +
Sbjct: 92 MSSARQLFDEMPVRNTASWNAMIDGYSRLRNVESAELLFSQMPNRDIISWTTMIACYSQN 151
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
+FREAL +F EMQT+ I DE T I++ F+ D+++G
Sbjct: 152 KQFREALAVFNEMQTNGIDPDEVTMATIISACAHLGALDLGKEIHLYAMEMGFDLDVYIG 211
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMY KCG ++K+ VF+K+ +K+ F W ++I GLA+ G+ + AL MFS+M R I+
Sbjct: 212 SALIDMYAKCGSLDKSLVVFFKLRKKNLFCWNSIIEGLAVHGYAEEALAMFSRMQREKIK 271
Query: 160 LDEVTYVGVLSACTH 174
+ VT++ VL ACTH
Sbjct: 272 PNGVTFISVLGACTH 286
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
F++ +FV AL+D Y G + +A+RVF +M +D F WT MI A +G +A +F
Sbjct: 41 FDSHVFVQTALVDFYGNAGKIVEARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFD 100
Query: 152 QM 153
+M
Sbjct: 101 EM 102
>gi|108706388|gb|ABF94183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 823
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 75/197 (38%), Positives = 110/197 (55%), Gaps = 23/197 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A ++F KD++SW +++ Y RG + +AR+ F Q+PERD V W MI GY+R
Sbjct: 164 IGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRC 223
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------DIF-------- 97
AL LF +MQ + D T + +L+ + D+F
Sbjct: 224 GSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVV 283
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
+G ALIDMY KCG ++ A VFW M KD TW +++ GLA+ GH ++DMF +ML+
Sbjct: 284 LGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGK 343
Query: 158 IRLDEVTYVGVLSACTH 174
+R DE+T+V VL AC+H
Sbjct: 344 VRPDEITFVAVLIACSH 360
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 45/143 (31%), Positives = 63/143 (44%), Gaps = 18/143 (12%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G + IA F D V W+AMI G R A LF E V+ L
Sbjct: 131 GNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDE-----------CPVKDL 179
Query: 90 TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDM 149
++N +I Y K GD+ A+ +F ++ +D +W MI G G AL++
Sbjct: 180 VSWN-------VMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALEL 232
Query: 150 FSQMLRASIRLDEVTYVGVLSAC 172
F QM R + D VT + +LSAC
Sbjct: 233 FEQMQRMGEKPDIVTMLSLLSAC 255
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 25/149 (16%)
Query: 29 RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM----QTSNIRRDEFT 84
RG + A F Q+P D ++ +I G R+A++L+ M +R D+ T
Sbjct: 25 RGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLT 84
Query: 85 ---TVRILTTF------------------NNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+R T +D FV ALI M+ CG++ A +F
Sbjct: 85 FPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRA 144
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
R+D W+AMI G A G A D+F +
Sbjct: 145 REDAVAWSAMITGCARRGDIGAARDLFDE 173
Score = 37.4 bits (85), Expect = 2.6, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 110 GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML----RASIRLDEVTY 165
G + A VF ++ R D+F + +I G A + A+ ++++ML +R D++T+
Sbjct: 26 GAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTF 85
Query: 166 VGVLSACT 173
VL ACT
Sbjct: 86 PFVLRACT 93
>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
Length = 650
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 72/193 (37%), Positives = 113/193 (58%), Gaps = 21/193 (10%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A +F + NK V+SWTT++ G+ G ++ AR F +MPERD W A++ GY++ +
Sbjct: 277 LAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQ 336
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIA 101
+EA+ LF EMQ S + +E T V +L+ + + +G +
Sbjct: 337 GKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALGTS 396
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+DMY KCG+++KA +F ++ K+ TWTAMI GLA GH D A++ F +M+ ++ D
Sbjct: 397 LVDMYAKCGNIKKAICIFKEIPDKNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQPD 456
Query: 162 EVTYVGVLSACTH 174
E+T++GVLSAC H
Sbjct: 457 EITFIGVLSACCH 469
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 62/228 (27%), Positives = 97/228 (42%), Gaps = 63/228 (27%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+GF+ ++F + N V W+ G + +AR+ F + P RD V W +I GY+R
Sbjct: 150 LGFSADVF--VVNAGVHFWSV-------SGSMVLARRLFDESPARDVVSWNTLIGGYVRS 200
Query: 61 NRFREALTLFREM--QTSNIRRDEFTTVRILTTFNN--DIFVGI---------------- 100
REAL LF + +R DE T + ++ D+ +G
Sbjct: 201 GLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVR 260
Query: 101 ---ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISG---------------- 141
A++DMY KCG +E A+ VF ++ K +WT MIVG A G
Sbjct: 261 LMNAVMDMYVKCGSLELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERD 320
Query: 142 ---------------HGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
G A+ +F +M + + +E+T V +LSAC+
Sbjct: 321 VFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQ 368
>gi|357116134|ref|XP_003559839.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Brachypodium distachyon]
Length = 601
Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats.
Identities = 76/195 (38%), Positives = 105/195 (53%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A+ +FG K KD ISW T+++G+ N G +D+A ++F P RD + W ++ GY R
Sbjct: 271 MNTAMRVFGEAKEKDDISWNTMIAGFANDGMLDLASKFFFDAPCRDLISWNTLLAGYGRC 330
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTF---------------------NNDIFVG 99
F + LF +M +S +R D+ T V +++ D F+
Sbjct: 331 REFAAVMELFNDMLSSRVRPDKVTAVTLISAAVSKGALNLGKSVHGWVLKEHGTQDAFLA 390
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
L+DMYCKCG+V+ A VF K L KD WTAMI GLA GHG ALD+F M +
Sbjct: 391 STLVDMYCKCGNVKLAYAVFEKALDKDVTLWTAMISGLAFHGHGTEALDLFWNMQNEGVA 450
Query: 160 LDEVTYVGVLSACTH 174
+ VT V VLSAC+H
Sbjct: 451 PNGVTLVTVLSACSH 465
Score = 75.5 bits (184), Expect = 8e-12, Method: Composition-based stats.
Identities = 52/205 (25%), Positives = 85/205 (41%), Gaps = 54/205 (26%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
+++ Y++ G + A F +P D V M+ GY++ AL LFR+M + I
Sbjct: 157 SLIKMYLDAGDAETAEAMFQSVPVPDVVSCNIMLSGYVKGGCVVNALQLFRDMASREIGV 216
Query: 81 DEFTTVRILTTF-----------------------NNDIFVGIALIDMYCKCGDVEKAQR 117
D++ V +L+ + + + AL+DMY KCG++ A R
Sbjct: 217 DQYAAVALLSCCGRLKNALLGRSVHGVVVRRMDIKDRGLILSNALLDMYAKCGEMNTAMR 276
Query: 118 VFWKMLRKDKFTWTAMIVGLAISGHGDTA------------------------------- 146
VF + KD +W MI G A G D A
Sbjct: 277 VFGEAKEKDDISWNTMIAGFANDGMLDLASKFFFDAPCRDLISWNTLLAGYGRCREFAAV 336
Query: 147 LDMFSQMLRASIRLDEVTYVGVLSA 171
+++F+ ML + +R D+VT V ++SA
Sbjct: 337 MELFNDMLSSRVRPDKVTAVTLISA 361
Score = 40.8 bits (94), Expect = 0.22, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 18/124 (14%)
Query: 67 LTLFREMQTSNIRRDEFTTVRILTT------------------FNNDIFVGIALIDMYCK 108
+ L++ M S+ DE T + +L + ++ +++ +LI MY
Sbjct: 105 VALYKSMLASSASPDEKTFLSLLKSVGCASVGKQVHAHVLVNGLHSRVYLRNSLIKMYLD 164
Query: 109 CGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGV 168
GD E A+ +F + D + M+ G G AL +F M I +D+ V +
Sbjct: 165 AGDAETAEAMFQSVPVPDVVSCNIMLSGYVKGGCVVNALQLFRDMASREIGVDQYAAVAL 224
Query: 169 LSAC 172
LS C
Sbjct: 225 LSCC 228
>gi|356567012|ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g44880-like [Glycine max]
Length = 599
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 111/195 (56%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A E+F M+ ++V+SWT++VSGY G V+ A+ F MPE++ W AMI GY +
Sbjct: 238 VGLARELFNEMRERNVVSWTSMVSGYCGNGDVENAKLMFDLMPEKNVFTWNAMIGGYCQN 297
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
R +AL LFREMQT+++ +E T V +L + +G
Sbjct: 298 RRSHDALELFREMQTASVEPNEVTVVCVLPAVADLGALDLGRWIHRFALRKKLDRSARIG 357
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMY KCG++ KA+ F M ++ +W A+I G A++G AL++F++M+
Sbjct: 358 TALIDMYAKCGEITKAKLAFEGMTERETASWNALINGFAVNGCAKEALEVFARMIEEGFG 417
Query: 160 LDEVTYVGVLSACTH 174
+EVT +GVLSAC H
Sbjct: 418 PNEVTMIGVLSACNH 432
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 88/171 (51%), Gaps = 18/171 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A ++F M + +SWT ++ GY G + AR+ F +M +RD V + AMIDGY+++
Sbjct: 176 LGSARKVFDEMSVRSKVSWTAVIVGYARCGDMSEARRLFDEMEDRDIVAFNAMIDGYVKM 235
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
A LF EM+ N + +++ YC GDVE A+ +F
Sbjct: 236 GCVGLARELFNEMRERN------------------VVSWTSMVSGYCGNGDVENAKLMFD 277
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
M K+ FTW AMI G + AL++F +M AS+ +EVT V VL A
Sbjct: 278 LMPEKNVFTWNAMIGGYCQNRRSHDALELFREMQTASVEPNEVTVVCVLPA 328
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 23/145 (15%)
Query: 32 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM--QTSNIRRDEFT----- 84
++ AR++F RD L +MI + +F + TLFR++ Q D +T
Sbjct: 73 INHARRFFNATHTRDTFLCNSMIAAHFAARQFSQPFTLFRDLRRQAPPFTPDGYTFTALV 132
Query: 85 ---TVRILT---------TFNN----DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
R+ T N D++V AL+DMY K G + A++VF +M + K
Sbjct: 133 KGCATRVATGEGTLLHGMVLKNGVCFDLYVATALVDMYVKFGVLGSARKVFDEMSVRSKV 192
Query: 129 TWTAMIVGLAISGHGDTALDMFSQM 153
+WTA+IVG A G A +F +M
Sbjct: 193 SWTAVIVGYARCGDMSEARRLFDEM 217
>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
Length = 933
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 111/195 (56%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +F M ++++ +W T++ GY +VD+A F QMP RD + WT MI+ Y +
Sbjct: 162 MSSAGRLFDMMPDRNLATWNTLIDGYARLREVDVAELLFNQMPARDIISWTTMINCYSQN 221
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
RFREAL +F EM I DE T +++ FN D+++G
Sbjct: 222 KRFREALGVFNEMAKHGISPDEVTMATVISACAHLGALDLGKEIHYYIMQHGFNLDVYIG 281
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMY KCG ++++ +F+K+ K+ F W ++I GLA+ G+ + AL MF +M R I+
Sbjct: 282 SALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMEREKIK 341
Query: 160 LDEVTYVGVLSACTH 174
+ VT+V VLSAC H
Sbjct: 342 PNGVTFVSVLSACNH 356
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 80/162 (49%), Gaps = 18/162 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ V T++V Y + G+++ + + F +MPERD WT M+ G +RV A LF
Sbjct: 112 DSHVFVQTSLVDFYSSMGRIEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDM 171
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA 132
M N L T+N LID Y + +V+ A+ +F +M +D +WT
Sbjct: 172 MPDRN-----------LATWNT-------LIDGYARLREVDVAELLFNQMPARDIISWTT 213
Query: 133 MIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
MI + + AL +F++M + I DEVT V+SAC H
Sbjct: 214 MINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACAH 255
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 21/162 (12%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
N+D +S ++D A + QM + ++ AMI G+++ + +AL L+ +
Sbjct: 11 NQDCYLMNQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQ 70
Query: 73 MQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGD 111
M +N+ +T ++ F++ +FV +L+D Y G
Sbjct: 71 MLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGR 130
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+E++ RVF +M +D F WT M+ GL G +A +F M
Sbjct: 131 IEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDMM 172
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%)
Query: 85 TVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGD 144
V + T N D ++ I ++ A + +M + F + AMI G S
Sbjct: 3 AVMVKTNTNQDCYLMNQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPV 62
Query: 145 TALDMFSQMLRASIRLDEVTYVGVLSAC 172
AL+++ QMLRA++ T+ ++ AC
Sbjct: 63 QALELYVQMLRANVSPTSYTFPSLIKAC 90
>gi|222624265|gb|EEE58397.1| hypothetical protein OsJ_09562 [Oryza sativa Japonica Group]
Length = 523
Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 110/198 (55%), Gaps = 23/198 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A ++F KD++SW +++ Y RG + +AR+ F Q+PERD V W MI GY+R
Sbjct: 164 IGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRC 223
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------DIF-------- 97
AL LF +MQ + D T + +L+ + D+F
Sbjct: 224 GSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVV 283
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
+G ALIDMY KCG ++ A VFW M KD TW +++ GLA+ GH ++DMF +ML+
Sbjct: 284 LGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGK 343
Query: 158 IRLDEVTYVGVLSACTHN 175
+R DE+T+V VL AC+H
Sbjct: 344 VRPDEITFVAVLIACSHG 361
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 68/161 (42%), Gaps = 18/161 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
D ++ + + G + IA F D V W+AMI G R A LF E
Sbjct: 114 ESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDE 173
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA 132
V+ L ++N +I Y K GD+ A+ +F ++ +D +W
Sbjct: 174 -----------CPVKDLVSWN-------VMITAYAKRGDMALARELFDQVPERDVVSWNV 215
Query: 133 MIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
MI G G AL++F QM R + D VT + +LSAC
Sbjct: 216 MISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACA 256
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 25/149 (16%)
Query: 29 RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM----QTSNIRRDEFT 84
RG + A F Q+P D ++ +I G R+A++L+ M +R D+ T
Sbjct: 25 RGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLT 84
Query: 85 ---TVRILTTF------------------NNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+R T +D FV ALI M+ CG++ A +F
Sbjct: 85 FPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRA 144
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
R+D W+AMI G A G A D+F +
Sbjct: 145 REDAVAWSAMITGCARRGDIGAARDLFDE 173
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 110 GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML----RASIRLDEVTY 165
G + A VF ++ R D+F + +I G A + A+ ++++ML +R D++T+
Sbjct: 26 GAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTF 85
Query: 166 VGVLSACT 173
VL ACT
Sbjct: 86 PFVLRACT 93
>gi|218192167|gb|EEC74594.1| hypothetical protein OsI_10176 [Oryza sativa Indica Group]
Length = 523
Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 110/198 (55%), Gaps = 23/198 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A ++F KD++SW +++ Y RG + +AR+ F Q+PERD V W MI GY+R
Sbjct: 164 IGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRC 223
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------DIF-------- 97
AL LF +MQ + D T + +L+ + D+F
Sbjct: 224 GSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVV 283
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
+G ALIDMY KCG ++ A VFW M KD TW +++ GLA+ GH ++DMF +ML+
Sbjct: 284 LGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGK 343
Query: 158 IRLDEVTYVGVLSACTHN 175
+R DE+T+V VL AC+H
Sbjct: 344 VRPDEITFVAVLIACSHG 361
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 68/161 (42%), Gaps = 18/161 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
D ++ + + G + IA F D V W+AMI G R A LF E
Sbjct: 114 ESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDE 173
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA 132
V+ L ++N +I Y K GD+ A+ +F ++ +D +W
Sbjct: 174 -----------CPVKDLVSWN-------VMITAYAKRGDMALARELFDQVPERDVVSWNV 215
Query: 133 MIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
MI G G AL++F QM R + D VT + +LSAC
Sbjct: 216 MISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACA 256
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 25/149 (16%)
Query: 29 RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM----QTSNIRRDEFT 84
RG + A F Q+P D ++ +I G R+A++L+ M +R D+ T
Sbjct: 25 RGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLT 84
Query: 85 ---TVRILTTF------------------NNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+R T +D FV ALI M+ CG++ A +F
Sbjct: 85 FPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRA 144
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
R+D W+AMI G A G A D+F +
Sbjct: 145 REDAVAWSAMITGCARRGDIGAARDLFDE 173
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 110 GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML----RASIRLDEVTY 165
G + A VF ++ R D+F + +I G A + A+ ++++ML +R D++T+
Sbjct: 26 GAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTF 85
Query: 166 VGVLSACT 173
VL ACT
Sbjct: 86 PFVLRACT 93
>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
Length = 1130
Score = 149 bits (375), Expect = 5e-34, Method: Composition-based stats.
Identities = 76/199 (38%), Positives = 112/199 (56%), Gaps = 25/199 (12%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+GFA ++F + D+ SW +I++ G VD+AR FA MPER+ + W+ MI+GY+R
Sbjct: 115 LGFARQVFDEIPQPDLPSWNSIINANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRC 174
Query: 61 NRFREALTLFREMQ---TSNIRRDEFTTVRILTTFNN---------------------DI 96
+++EAL LFREMQ +++R +EFT +L D+
Sbjct: 175 GQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDV 234
Query: 97 FVGIALIDMYCKCGDVEKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155
+G ALIDMY KCG VEKA VF + KD W+AMI GLA+ G + + +FS+M+
Sbjct: 235 VLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMIN 294
Query: 156 ASIRLDEVTYVGVLSACTH 174
+R + VT++ V AC H
Sbjct: 295 QGVRPNAVTFLAVFCACVH 313
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 34/112 (30%)
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVF----------WK---------------------ML 123
D FV +LI MY CG++ A++VF W M
Sbjct: 98 DPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQAGLVDMARNLFAVMP 157
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFS--QMLRAS-IRLDEVTYVGVLSAC 172
++ +W+ MI G G AL +F QML + +R +E T GVL+AC
Sbjct: 158 ERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAAC 209
>gi|297745917|emb|CBI15973.3| unnamed protein product [Vitis vinifera]
Length = 652
Score = 149 bits (375), Expect = 6e-34, Method: Composition-based stats.
Identities = 70/171 (40%), Positives = 103/171 (60%), Gaps = 2/171 (1%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M KD++SWTT++ GY G+ D A+ F MP +D W A+I Y + +
Sbjct: 253 AKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKP 312
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+EAL LF E+Q S + + T++ N + +LIDMYCKCGD++KA VF +
Sbjct: 313 KEALELFHELQLSKTAKPDEVTLKQGMKLN--CHLTTSLIDMYCKCGDLQKALMVFHSVE 370
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
RKD F W+AMI GLA+ GHG A+ +FS+M ++ + VT+ +L AC+H
Sbjct: 371 RKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSH 421
Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 51/139 (36%), Positives = 72/139 (51%), Gaps = 17/139 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV +++ Y G++ + + F +P RD V W +MI +++ EAL LF+EM+
Sbjct: 170 DVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEME 229
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
T N LT N A++DMY KCG VE A+R+F KM KD +WT M+
Sbjct: 230 TQNS----------LTLSN-------AMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTML 272
Query: 135 VGLAISGHGDTALDMFSQM 153
VG A G D A +F M
Sbjct: 273 VGYAKIGEYDAAQGIFDAM 291
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 32 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF-REMQTSNIRRDEFT------ 84
+D A+Q F Q+P + W +I Y + ++L +F R + S D+FT
Sbjct: 85 LDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIK 144
Query: 85 -----------------TVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDK 127
+++L +D+F+ +LI Y KCG++ RVF + R+D
Sbjct: 145 AASELEELFTGKAFHGMVIKVL--LGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDV 202
Query: 128 FTWTAMIVGLAISGHGDTALDMFSQM 153
+W +MI G + AL++F +M
Sbjct: 203 VSWNSMITAFVQGGCPEEALELFQEM 228
>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 624
Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats.
Identities = 74/193 (38%), Positives = 107/193 (55%), Gaps = 21/193 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F NM +DV+SWT++++GY G VD AR+ F MPER+ V W AMI Y++ NR
Sbjct: 174 ARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRL 233
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
EA LF M+ N+ D+F +L+ D + +
Sbjct: 234 HEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTV 293
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMYCKCG +EKA VF ++ +K +W MI GLA+ G G+ A+++F +M R + D
Sbjct: 294 IDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDG 353
Query: 163 VTYVGVLSACTHN 175
+T+V VLSAC H+
Sbjct: 354 ITFVNVLSACAHS 366
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 21/145 (14%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G ++ A + F ++P D ++ + GYLR R + ++ M ++ ++FT ++
Sbjct: 68 GDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLI 127
Query: 90 TT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
F D F LI MY +E+A+RVF M ++D
Sbjct: 128 RACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVV 187
Query: 129 TWTAMIVGLAISGHGDTALDMFSQM 153
+WT++I G + G D A ++F M
Sbjct: 188 SWTSLITGYSQWGFVDKAREVFELM 212
>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 115/201 (57%), Gaps = 27/201 (13%)
Query: 1 MGFALEIFG------NMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMI 54
MGFA E G + N DV +V Y+ G + AR+ F +MP ++ V W +MI
Sbjct: 219 MGFAREGVGLYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMI 278
Query: 55 DGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN-------------------- 94
G + +F+E+L +FR+MQ ++ D+ T V +L + N
Sbjct: 279 SGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIR 338
Query: 95 -DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
D F+G AL+DMY KCG +++A VF M RKD +++TAMIVGLA+ G G ALD+FS+M
Sbjct: 339 ADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEM 398
Query: 154 LRASIRLDEVTYVGVLSACTH 174
+ I DEVT+VGVL+AC+H
Sbjct: 399 PKMGIEPDEVTFVGVLTACSH 419
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 82/140 (58%), Gaps = 15/140 (10%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN 94
AR+ F P+RD V WT MI GY+++ RE + L+ ++ SN+ N
Sbjct: 194 ARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLYI-IRNSNV--------------NL 238
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML 154
D+FVG AL+DMY KCGD A++VF +M K+ +W +MI GLA G +L MF +M
Sbjct: 239 DVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQ 298
Query: 155 RASIRLDEVTYVGVLSACTH 174
R ++ D+VT V VL++C +
Sbjct: 299 RLGVKPDDVTLVAVLNSCAN 318
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 60/150 (40%), Gaps = 34/150 (22%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFR-EALTLFREMQTSNIRRDEFTTVRILTT-- 91
A AQ+ + L+ A+I G N E L ++++M + I D +T +L
Sbjct: 92 ALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACA 151
Query: 92 -------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA 132
+D++V L+ MY C + A++VF ++D +WT
Sbjct: 152 ESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTT 211
Query: 133 MI------------VGLAISGHGDTALDMF 150
MI VGL I + + LD+F
Sbjct: 212 MIQGYVKMGFAREGVGLYIIRNSNVNLDVF 241
>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
[Vitis vinifera]
Length = 594
Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 77/195 (39%), Positives = 110/195 (56%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A E+F M ++V+SW+T+V GY G +D+AR F +MP ++ V WT MI GY
Sbjct: 230 MNAAFELFEKMPARNVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYAEK 289
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVG 99
++A+ L+ +M+ + ++ D+ T + IL T F V
Sbjct: 290 GLAKDAINLYNQMEEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPVS 349
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMY KCG +E A +F M+RKD +W A+I GLA+ GHG+ AL +FS+M
Sbjct: 350 NALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFV 409
Query: 160 LDEVTYVGVLSACTH 174
D+VT+VGVL ACTH
Sbjct: 410 PDKVTFVGVLCACTH 424
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 90/170 (52%), Gaps = 18/170 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +D +SW +++ G + G++ AR+ F +MPERD V W ++DGY++
Sbjct: 171 ARKVFEVMAERDTVSWNSMIGGLVKVGELGEARRLFDEMPERDTVSWNTILDGYVKAGEM 230
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
A LF +M N+ ++T ++ Y K GD++ A+ +F KM
Sbjct: 231 NAAFELFEKMPARNVV--SWST----------------MVLGYSKAGDMDMARILFDKMP 272
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
K+ WT MI G A G A+++++QM A ++ D+ T + +LSAC
Sbjct: 273 VKNLVPWTIMISGYAEKGLAKDAINLYNQMEEAGLKFDDGTVISILSACA 322
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 23/146 (15%)
Query: 31 QVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT 90
Q+ +A F Q+ + D +L+ +I ++R + A ++F EMQ S + D FT +L
Sbjct: 64 QMTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLK 123
Query: 91 T---------------------FNNDIFVGIALIDMYCKCG--DVEKAQRVFWKMLRKDK 127
F DIFV +LID Y KCG V A++VF M +D
Sbjct: 124 ACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERDT 183
Query: 128 FTWTAMIVGLAISGHGDTALDMFSQM 153
+W +MI GL G A +F +M
Sbjct: 184 VSWNSMIGGLVKVGELGEARRLFDEM 209
>gi|19071652|gb|AAL84319.1|AC073556_36 putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
Length = 545
Score = 148 bits (373), Expect = 8e-34, Method: Composition-based stats.
Identities = 75/197 (38%), Positives = 110/197 (55%), Gaps = 23/197 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A ++F KD++SW +++ Y RG + +AR+ F Q+PERD V W MI GY+R
Sbjct: 194 IGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRC 253
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------DIF-------- 97
AL LF +MQ + D T + +L+ + D+F
Sbjct: 254 GSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVV 313
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
+G ALIDMY KCG ++ A VFW M KD TW +++ GLA+ GH ++DMF +ML+
Sbjct: 314 LGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGK 373
Query: 158 IRLDEVTYVGVLSACTH 174
+R DE+T+V VL AC+H
Sbjct: 374 VRPDEITFVAVLIACSH 390
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/143 (31%), Positives = 63/143 (44%), Gaps = 18/143 (12%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G + IA F D V W+AMI G R A LF E V+ L
Sbjct: 161 GNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDE-----------CPVKDL 209
Query: 90 TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDM 149
++N +I Y K GD+ A+ +F ++ +D +W MI G G AL++
Sbjct: 210 VSWN-------VMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALEL 262
Query: 150 FSQMLRASIRLDEVTYVGVLSAC 172
F QM R + D VT + +LSAC
Sbjct: 263 FEQMQRMGEKPDIVTMLSLLSAC 285
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 25/149 (16%)
Query: 29 RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM----QTSNIRRDEFT 84
RG + A F Q+P D ++ +I G R+A++L+ M +R D+ T
Sbjct: 55 RGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLT 114
Query: 85 ---TVRILTTF------------------NNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+R T +D FV ALI M+ CG++ A +F
Sbjct: 115 FPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRA 174
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
R+D W+AMI G A G A D+F +
Sbjct: 175 REDAVAWSAMITGCARRGDIGAARDLFDE 203
Score = 36.6 bits (83), Expect = 3.7, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 110 GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML----RASIRLDEVTY 165
G + A VF ++ R D+F + +I G A + A+ ++++ML +R D++T+
Sbjct: 56 GAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTF 115
Query: 166 VGVLSACT 173
VL ACT
Sbjct: 116 PFVLRACT 123
>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
Length = 742
Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats.
Identities = 73/178 (41%), Positives = 99/178 (55%), Gaps = 21/178 (11%)
Query: 19 WTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 78
W I+ GY G VD+AR F QM RD + + +MI GY+ R R+AL LF +M+ +
Sbjct: 307 WNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGM 366
Query: 79 RRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQR 117
R D FT V +LT D+++G AL+DMY KCG V++A
Sbjct: 367 RADNFTVVSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATA 426
Query: 118 VFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
VF +M +D TWTAMI GLA +G G AL+ F QM R + VTY+ VL+AC+H+
Sbjct: 427 VFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHS 484
Score = 98.6 bits (244), Expect = 9e-19, Method: Composition-based stats.
Identities = 67/222 (30%), Positives = 96/222 (43%), Gaps = 53/222 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A F + KD + W T++ G + G +D AR+ Q PER+ V WT++I GY R R
Sbjct: 159 ARRAFDEIPAKDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRP 218
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN----------DIFVG-----------IAL 102
+A+ F M + + DE + L+ + + VG +AL
Sbjct: 219 ADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVAL 278
Query: 103 IDMYCKCGDVEKAQRVF-----------W---------------------KMLRKDKFTW 130
IDMY KCGD+ +AQ VF W +M +D T+
Sbjct: 279 IDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKLGHVDVARSLFDQMGARDVITF 338
Query: 131 TAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+MI G SG AL +F QM R +R D T V +L+AC
Sbjct: 339 NSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTAC 380
Score = 45.4 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 12/159 (7%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
+DV T ++ Y+ G+VD A F +M ERD WTAMI G ++AL F +M
Sbjct: 403 EDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQM 462
Query: 74 QTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
+ + T + +LT ++ +L+D G + + L + M
Sbjct: 463 KRDGFQPTSVTYIAVLTACSHS-----SLLDE----GRLHFNEMRSLHKLHPQVEHYGCM 513
Query: 134 IVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
I LA SG D A+ + M ++ + V + +LSAC
Sbjct: 514 IDLLARSGLLDEAMHLVQTM---PMQPNAVIWGSILSAC 549
>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Vitis vinifera]
Length = 647
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 115/197 (58%), Gaps = 23/197 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G +F M ++DVISWT+++ Y G ++ A + F +P +D V WTAM+ GY +
Sbjct: 191 LGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQN 250
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTF-----------------------NNDIF 97
R REAL +F MQ + ++ DE T V +++ +++
Sbjct: 251 ARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVV 310
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
VG ALIDMY KCG VE A +VF +M ++ +++++MIVG A+ G A+++F +ML+
Sbjct: 311 VGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTE 370
Query: 158 IRLDEVTYVGVLSACTH 174
I+ + VT++GVL+AC+H
Sbjct: 371 IKPNRVTFIGVLTACSH 387
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 79/193 (40%), Gaps = 53/193 (27%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT--- 91
R F Q+ + LWTA+I GY F E++ L+ M+ I FT +L
Sbjct: 92 PRLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSA 151
Query: 92 -------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKML--------- 123
F +D++VG LIDMY KCG + RVF +ML
Sbjct: 152 ALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTS 211
Query: 124 ----------------------RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
KD WTAM+ G A + AL++F +M A ++ D
Sbjct: 212 LIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTD 271
Query: 162 EVTYVGVLSACTH 174
EVT VGV+SAC
Sbjct: 272 EVTLVGVISACAQ 284
>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
Length = 526
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 113/196 (57%), Gaps = 22/196 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A ++F M KD++SW +++GY RG+++ AR+ F ++P+RD V W AMI GY+
Sbjct: 160 LGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLC 219
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN----------------------DIFV 98
++AL +F EM++ DE T + +L+ + + +
Sbjct: 220 GSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLL 279
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
G ALIDMY KCG + +A VF M KD TW +++ GLA GH + ++ +F++M + I
Sbjct: 280 GNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKI 339
Query: 159 RLDEVTYVGVLSACTH 174
R DE+T+VGVL AC+H
Sbjct: 340 RPDEITFVGVLVACSH 355
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 77/154 (50%), Gaps = 18/154 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T++ + N G + +AR F +RD V W+A+ GY R A LF EM
Sbjct: 117 NTLIYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLFDEM------ 170
Query: 80 RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAI 139
V+ L ++N +I Y K G++E A+++F ++ ++D TW AMI G +
Sbjct: 171 -----PVKDLVSWN-------VMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVL 218
Query: 140 SGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
G AL+MF +M DEVT + +LSACT
Sbjct: 219 CGSNQQALEMFEEMRSVGELPDEVTMLSLLSACT 252
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 61/145 (42%), Gaps = 21/145 (14%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G + A Q F + E D +W MI G + A++L+ +M+ +R D+FT +L
Sbjct: 26 GTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVL 85
Query: 90 TT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
F ++ FV LI + CGD+ A+ +F ++D
Sbjct: 86 KACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVV 145
Query: 129 TWTAMIVGLAISGHGDTALDMFSQM 153
W+A+ G A G A +F +M
Sbjct: 146 AWSALTAGYARRGELGVARQLFDEM 170
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 110 GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVL 169
G + A ++F + D F W MI G A S A+ ++SQM +R D+ T+ VL
Sbjct: 26 GTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVL 85
Query: 170 SACT 173
ACT
Sbjct: 86 KACT 89
>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
small; Tetratricopeptide-like helical [Medicago
truncatula]
Length = 971
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 73/189 (38%), Positives = 111/189 (58%), Gaps = 21/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F NM K ++SWTT+V GY G +D+AR+ ++PE+ V W A+I G ++ + +EA
Sbjct: 316 LFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEA 375
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDM 105
L LF EMQ I D+ T V L+ + D+ +G AL+DM
Sbjct: 376 LALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDM 435
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y KCG++ +A +VF ++ +++ TWTA+I GLA+ G+ AL FS+M+ I DE+T+
Sbjct: 436 YAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITF 495
Query: 166 VGVLSACTH 174
+GVLSAC H
Sbjct: 496 LGVLSACCH 504
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 54/212 (25%), Positives = 95/212 (44%), Gaps = 52/212 (24%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ ++ ++ G++ +A F + RD V W +MI G ++ EA+ +++EM+
Sbjct: 192 DIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEME 251
Query: 75 TSNIRRDEFTTVRILTTFNN--DIFVGI-------------------ALIDMYCKCGDVE 113
+R +E T + ++++ + D+ +G AL+DMY KCG++
Sbjct: 252 AEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELL 311
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLA--------------------------ISG-----H 142
A+ +F M +K +WT M++G A ISG
Sbjct: 312 TARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQ 371
Query: 143 GDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
G AL +F +M +I D+VT V LSAC+
Sbjct: 372 GKEALALFHEMQIRTIEPDKVTMVNCLSACSQ 403
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/166 (24%), Positives = 68/166 (40%), Gaps = 22/166 (13%)
Query: 31 QVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT 90
++D + ++ E + W A I GY+ L++ M + + T +L
Sbjct: 106 ELDYCTRILYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLL 165
Query: 91 T----------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
F DIFV A I M CG++ A VF K +D
Sbjct: 166 KGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLV 225
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
TW +MI G G A+ ++ +M +R +E+T +G++S+C+
Sbjct: 226 TWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQ 271
>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1026
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 73/189 (38%), Positives = 111/189 (58%), Gaps = 21/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F NM K ++SWTT+V GY G +D+AR+ ++PE+ V W A+I G ++ + +EA
Sbjct: 316 LFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEA 375
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDM 105
L LF EMQ I D+ T V L+ + D+ +G AL+DM
Sbjct: 376 LALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDM 435
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y KCG++ +A +VF ++ +++ TWTA+I GLA+ G+ AL FS+M+ I DE+T+
Sbjct: 436 YAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITF 495
Query: 166 VGVLSACTH 174
+GVLSAC H
Sbjct: 496 LGVLSACCH 504
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 54/212 (25%), Positives = 95/212 (44%), Gaps = 52/212 (24%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ ++ ++ G++ +A F + RD V W +MI G ++ EA+ +++EM+
Sbjct: 192 DIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEME 251
Query: 75 TSNIRRDEFTTVRILTTFNN--DIFVGI-------------------ALIDMYCKCGDVE 113
+R +E T + ++++ + D+ +G AL+DMY KCG++
Sbjct: 252 AEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELL 311
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLA--------------------------ISG-----H 142
A+ +F M +K +WT M++G A ISG
Sbjct: 312 TARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQ 371
Query: 143 GDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
G AL +F +M +I D+VT V LSAC+
Sbjct: 372 GKEALALFHEMQIRTIEPDKVTMVNCLSACSQ 403
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/166 (24%), Positives = 68/166 (40%), Gaps = 22/166 (13%)
Query: 31 QVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT 90
++D + ++ E + W A I GY+ L++ M + + T +L
Sbjct: 106 ELDYCTRILYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLL 165
Query: 91 T----------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
F DIFV A I M CG++ A VF K +D
Sbjct: 166 KGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLV 225
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
TW +MI G G A+ ++ +M +R +E+T +G++S+C+
Sbjct: 226 TWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQ 271
>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Vitis vinifera]
Length = 550
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 113/196 (57%), Gaps = 22/196 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A ++F M KD++SW +++GY RG+++ AR+ F ++P+RD V W AMI GY+
Sbjct: 195 LGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLC 254
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN----------------------DIFV 98
++AL +F EM++ DE T + +L+ + + +
Sbjct: 255 GSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLL 314
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
G ALIDMY KCG + +A VF M KD TW +++ GLA GH + ++ +F++M + I
Sbjct: 315 GNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKI 374
Query: 159 RLDEVTYVGVLSACTH 174
R DE+T+VGVL AC+H
Sbjct: 375 RPDEITFVGVLVACSH 390
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 77/154 (50%), Gaps = 18/154 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T++ + N G + +AR F +RD V W+A+ GY R A LF EM
Sbjct: 152 NTLIYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLFDEM------ 205
Query: 80 RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAI 139
V+ L ++N +I Y K G++E A+++F ++ ++D TW AMI G +
Sbjct: 206 -----PVKDLVSWN-------VMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVL 253
Query: 140 SGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
G AL+MF +M DEVT + +LSACT
Sbjct: 254 CGSNQQALEMFEEMRSVGELPDEVTMLSLLSACT 287
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 61/145 (42%), Gaps = 21/145 (14%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G + A Q F + E D +W MI G + A++L+ +M+ +R D+FT +L
Sbjct: 61 GTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVL 120
Query: 90 TT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
F ++ FV LI + CGD+ A+ +F ++D
Sbjct: 121 KACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVV 180
Query: 129 TWTAMIVGLAISGHGDTALDMFSQM 153
W+A+ G A G A +F +M
Sbjct: 181 AWSALTAGYARRGELGVARQLFDEM 205
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 110 GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVL 169
G + A ++F + D F W MI G A S A+ ++SQM +R D+ T+ VL
Sbjct: 61 GTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVL 120
Query: 170 SACT 173
ACT
Sbjct: 121 KACT 124
>gi|255566233|ref|XP_002524104.1| transferase, transferring glycosyl groups, putative [Ricinus
communis]
gi|223536672|gb|EEF38314.1| transferase, transferring glycosyl groups, putative [Ricinus
communis]
Length = 810
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 66/189 (34%), Positives = 111/189 (58%), Gaps = 21/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
IF M DV+SWT++++GY G V+ AR+ F +MPE++ V W+ MI GY + N F +A
Sbjct: 596 IFQTMSQLDVVSWTSMIAGYNKSGDVESARKLFDKMPEKNLVTWSTMISGYAKNNCFNKA 655
Query: 67 LTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDM 105
+ L+ +Q+ ++ +E V ++++ ++ +G AL+DM
Sbjct: 656 IELYNVLQSEGVQANETVMVSVISSCAHLGALELGEKAHDYVVRNKITVNLILGTALVDM 715
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y +CG ++KA +VF ++ KD +WTA+I G A+ GH + AL FS+M+R + ++T+
Sbjct: 716 YARCGSIDKAVQVFDELGEKDALSWTALIAGFAMHGHAEKALQYFSEMIRTGLTPRDITF 775
Query: 166 VGVLSACTH 174
VLSAC+H
Sbjct: 776 TAVLSACSH 784
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
F ND++V +L++MY GD+ A +F M + D +WT+MI G SG ++A +F
Sbjct: 570 FENDVYVQNSLVNMYSNLGDIRAASYIFQTMSQLDVVSWTSMIAGYNKSGDVESARKLFD 629
Query: 152 QMLRASIRLDEVTYVGVLSACTHN 175
+M ++ VT+ ++S N
Sbjct: 630 KMPEKNL----VTWSTMISGYAKN 649
Score = 41.2 bits (95), Expect = 0.17, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQM 42
A+++F + KD +SWT +++G+ G + A QYF++M
Sbjct: 725 AVQVFDELGEKDALSWTALIAGFAMHGHAEKALQYFSEM 763
>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 591
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 109/192 (56%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A EIF M K+V WT++V+GY+ GQ+D AR F + P RD VLWTAMI+GY++ N F
Sbjct: 263 AREIFDAMIVKNVNCWTSMVTGYVICGQLDQARYLFERSPSRDVVLWTAMINGYVQFNHF 322
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
+A+ LF EMQ + D+F V +LT D V AL
Sbjct: 323 EDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQGKWIHNYIDENRIKMDAVVSTAL 382
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I+MY KCG +EK+ +F + D +WT++I GLA++G AL++F M ++ D+
Sbjct: 383 IEMYAKCGCIEKSLEIFNGLKDMDTTSWTSIICGLAMNGKTSEALELFEAMQTCGLKPDD 442
Query: 163 VTYVGVLSACTH 174
+T+V VLSAC H
Sbjct: 443 ITFVAVLSACGH 454
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 80/159 (50%), Gaps = 21/159 (13%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D +++ Y G V+ Q F +MPERD V W MI GY+R RF EA+ ++R MQ
Sbjct: 142 DPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVRCKRFEEAVDVYRRMQ 201
Query: 75 -TSNIRRDEFTTVRILTT----------------FNNDI----FVGIALIDMYCKCGDVE 113
SN + +E T V L+ N++ +G AL+DMYCKCG V
Sbjct: 202 MESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIANELDLTPIMGNALLDMYCKCGCVS 261
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
A+ +F M+ K+ WT+M+ G I G D A +F +
Sbjct: 262 VAREIFDAMIVKNVNCWTSMVTGYVICGQLDQARYLFER 300
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 86/188 (45%), Gaps = 22/188 (11%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 67
FG +++D+++ S + G + A + F + ++ MI +++ R A+
Sbjct: 34 FGLQQDRDILNKLMAFSMDSSLGDFNYANRIFNHIHHPSLFIYNLMIKAFVKRGSLRSAI 93
Query: 68 TLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIALIDMY 106
+LF++++ + D +T +L T D +V +L+DMY
Sbjct: 94 SLFQQLRERGVWPDNYTYPYVLKGIGCIGEVREGEKIHAFVVKTGLEFDPYVCNSLMDMY 153
Query: 107 CKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM-LRASIRLDEVTY 165
+ G VE +VF +M +D +W MI G + A+D++ +M + ++ + +E T
Sbjct: 154 AELGLVEGFTQVFEEMPERDAVSWNIMISGYVRCKRFEEAVDVYRRMQMESNEKPNEATV 213
Query: 166 VGVLSACT 173
V LSAC
Sbjct: 214 VSTLSACA 221
>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 617
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 108/183 (59%), Gaps = 21/183 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
N DV +V Y+ G + AR+ F +MP ++ V W +MI G + +F+E+L +FR+
Sbjct: 259 NLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRK 318
Query: 73 MQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGD 111
MQ ++ D+ T V +L + N D F+G AL+DMY KCG
Sbjct: 319 MQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGS 378
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+++A VF M RKD +++TAMIVGLA+ G G ALD+FS+M + I DEVT+VGVL+A
Sbjct: 379 IDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTA 438
Query: 172 CTH 174
C+H
Sbjct: 439 CSH 441
Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 89/162 (54%), Gaps = 22/162 (13%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT--- 91
AR+ F P+RD V WT MI GY+++ RE + LF EM N++ D T V +L++
Sbjct: 179 ARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCAR 238
Query: 92 -------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA 132
N D+FVG AL+DMY KCGD A++VF +M K+ +W +
Sbjct: 239 LGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNS 298
Query: 133 MIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
MI GLA G +L MF +M R ++ D+VT V VL++C +
Sbjct: 299 MISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCAN 340
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 22/161 (13%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFR-EALTLFREMQTSNIRRDEFTTVRILTT-- 91
A AQ+ + L+ A+I G N E L ++++M + I D +T +L
Sbjct: 77 ALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACA 136
Query: 92 -------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA 132
+D++V L+ MY C + A++VF ++D +WT
Sbjct: 137 ESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTT 196
Query: 133 MIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
MI G G + +F +M +++ D +T V VLS+C
Sbjct: 197 MIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCA 237
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 61/158 (38%), Gaps = 22/158 (13%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+V Y G +D A F M +D +TAMI G + +AL LF EM I
Sbjct: 367 NALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIE 426
Query: 80 RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM-----LRKDKFTWTAMI 134
DE T V +LT ++ G VE+ ++ F M LR + M+
Sbjct: 427 PDEVTFVGVLTACSH--------------VGLVEEGRKYFEDMSTIYNLRPQLEHYGCMV 472
Query: 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
L +G + A + M I D +L AC
Sbjct: 473 DLLGRAGLINEAEEFIRNM---PIEPDAFVLGALLGAC 507
>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
[Vitis vinifera]
Length = 576
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 77/192 (40%), Positives = 107/192 (55%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F + +DV W +V+GY G VD AR F +MPER+ + WTA+I GY +++R
Sbjct: 193 ARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRP 252
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
EA+T+FR MQ + DE + L+ + + + AL
Sbjct: 253 NEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNAL 312
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG +EKA VF M K TWT+MI GLA+ G G AL+MFS M R I+ +E
Sbjct: 313 IDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNE 372
Query: 163 VTYVGVLSACTH 174
+T+V +LSAC H
Sbjct: 373 ITFVAILSACCH 384
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/188 (24%), Positives = 71/188 (37%), Gaps = 52/188 (27%)
Query: 39 FAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFT-------TVRIL-- 89
F D L+ +I EA+ L+ + S++R D ++ VR+L
Sbjct: 96 FTHKTRPDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAI 155
Query: 90 ------------TTFNNDIFVGIALIDMYCKC---------------------------- 109
T +DI V ALI MY C
Sbjct: 156 HVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGY 215
Query: 110 ---GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYV 166
GDV+ A+ +F +M ++ +WTA+I G A + A+ MF +M + DE+ +
Sbjct: 216 AKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAML 275
Query: 167 GVLSACTH 174
LSAC H
Sbjct: 276 AALSACAH 283
>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
Length = 576
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 77/192 (40%), Positives = 107/192 (55%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F + +DV W +V+GY G VD AR F +MPER+ + WTA+I GY +++R
Sbjct: 193 ARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRP 252
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
EA+T+FR MQ + DE + L+ + + + AL
Sbjct: 253 NEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNAL 312
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG +EKA VF M K TWT+MI GLA+ G G AL+MFS M R I+ +E
Sbjct: 313 IDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNE 372
Query: 163 VTYVGVLSACTH 174
+T+V +LSAC H
Sbjct: 373 ITFVAILSACCH 384
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/188 (24%), Positives = 71/188 (37%), Gaps = 52/188 (27%)
Query: 39 FAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFT-------TVRIL-- 89
F D L+ +I EA+ L+ + S++R D ++ VR+L
Sbjct: 96 FTHKTRPDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAI 155
Query: 90 ------------TTFNNDIFVGIALIDMYCKC---------------------------- 109
T +DI V ALI MY C
Sbjct: 156 HVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGY 215
Query: 110 ---GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYV 166
GDV+ A+ +F +M ++ +WTA+I G A + A+ MF +M + DE+ +
Sbjct: 216 AKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAML 275
Query: 167 GVLSACTH 174
LSAC H
Sbjct: 276 AALSACAH 283
>gi|225444117|ref|XP_002266487.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 553
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 73/181 (40%), Positives = 106/181 (58%), Gaps = 21/181 (11%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
+DV+S T + +GY++ G +D+AR F QM +D V W +MI Y++ ++A+ LFR+M
Sbjct: 238 RDVVSHTILFNGYVDMGSIDLARGIFDQMSVKDLVSWNSMIHAYVKAKHPKKAIELFRKM 297
Query: 74 QTSNIRRDEFTTVRILTTF------------------NN---DIFVGIALIDMYCKCGDV 112
+ + DE T V +L NN D+FVG ALIDMY KCG +
Sbjct: 298 ENEMVEPDETTMVSVLAACASLADLQNGRLAHRFIIQNNPRQDLFVGTALIDMYAKCGSL 357
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
E+A F+KM +D FTWT I GLA GHGD AL +F++M + I+ ++ T+V VL AC
Sbjct: 358 EEAMVTFYKMDSRDVFTWTTAIEGLANHGHGDKALSLFTEMEKQGIKPNQATFVSVLMAC 417
Query: 173 T 173
+
Sbjct: 418 S 418
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 84/214 (39%), Gaps = 55/214 (25%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ DV ++ Y + GQV AR+ F MP RD W ++ Y + E L LF+
Sbjct: 106 DSDVYVGNALLHLYGSTGQVTDARRLFDGMPHRDLASWNTLLGAY--NDNAVEVLVLFKR 163
Query: 73 MQTSNIRRDEFTTVRIL--------TTFNNDIF-----VGI--------ALIDMYCKCGD 111
M I D + V + T F ++ VGI AL+ +Y KCG+
Sbjct: 164 MMYEGIGGDHISMVIVFSACGKIGGTEFGKEVHGYVIKVGIRPALSLSNALLGVYTKCGE 223
Query: 112 VEKAQRVFWKMLR--------------------------------KDKFTWTAMIVGLAI 139
++ AQ +F +M KD +W +MI
Sbjct: 224 MDAAQSLFVEMAAMRDVVSHTILFNGYVDMGSIDLARGIFDQMSVKDLVSWNSMIHAYVK 283
Query: 140 SGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+ H A+++F +M + DE T V VL+AC
Sbjct: 284 AKHPKKAIELFRKMENEMVEPDETTMVSVLAACA 317
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 90 TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALD- 148
T ++D++VG AL+ +Y G V A+R+F M +D +W + + + D A++
Sbjct: 103 TGLDSDVYVGNALLHLYGSTGQVTDARRLFDGMPHRDLASWNTL-----LGAYNDNAVEV 157
Query: 149 --MFSQMLRASIRLDEVTYVGVLSAC 172
+F +M+ I D ++ V V SAC
Sbjct: 158 LVLFKRMMYEGIGGDHISMVIVFSAC 183
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
I N +D+ T ++ Y G ++ A F +M RD WT I+G +A
Sbjct: 332 IIQNNPRQDLFVGTALIDMYAKCGSLEEAMVTFYKMDSRDVFTWTTAIEGLANHGHGDKA 391
Query: 67 LTLFREMQTSNIRRDEFTTVRIL 89
L+LF EM+ I+ ++ T V +L
Sbjct: 392 LSLFTEMEKQGIKPNQATFVSVL 414
Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYLR 59
A+ F M ++DV +WTT + G N G D A F +M ++ + + +++ R
Sbjct: 360 AMVTFYKMDSRDVFTWTTAIEGLANHGHGDKALSLFTEMEKQGIKPNQATFVSVLMACSR 419
Query: 60 VNRFREALTLFREM 73
+E LF+ M
Sbjct: 420 SGLVKEGCLLFKRM 433
>gi|357142117|ref|XP_003572465.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Brachypodium distachyon]
Length = 613
Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats.
Identities = 70/194 (36%), Positives = 115/194 (59%), Gaps = 23/194 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVS-GYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A +F M+ +DV +W ++ Y G V+ AR+ F MPER+ V WT+MI GY +V +
Sbjct: 252 ARSVFDGMRQRDVATWNVMIGVMYAKCGLVEDARKVFDAMPERNVVCWTSMISGYTQVGK 311
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIA 101
F++A+ LFR+MQ S ++ D+ T ++++ I V +
Sbjct: 312 FKQAVKLFRDMQISGVKADDATIATVVSSCGQMGALDLGRYVHAYCDVHGLGKGISVKNS 371
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM-LRASIRL 160
LIDMY KCGD++KA +F ++++D F+WT MI+G A++G ALD+F+QM +
Sbjct: 372 LIDMYSKCGDIKKAHEIFRGLVKRDDFSWTVMIMGFAVNGLSGEALDLFAQMEEEGEVMP 431
Query: 161 DEVTYVGVLSACTH 174
+E+T++GVL++C+H
Sbjct: 432 NEITFLGVLTSCSH 445
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 49/201 (24%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER------------------ 45
A +F + KD + T+++ Y+ G+V++A + F MPER
Sbjct: 158 ARRVFDRLLVKDAQLYNTMIAAYMEAGEVELAEELFEVMPERNTHTLMEMVGGYSARGDM 217
Query: 46 --------------DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT 91
+ VL TAMI G+ + +A ++F M+ +RD + T
Sbjct: 218 DSAKHVFEMANGVVNMVLCTAMISGFAKTGSVDDARSVFDGMR----QRD-------VAT 266
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
+N + +G+ MY KCG VE A++VF M ++ WT+MI G G A+ +F
Sbjct: 267 WN--VMIGV----MYAKCGLVEDARKVFDAMPERNVVCWTSMISGYTQVGKFKQAVKLFR 320
Query: 152 QMLRASIRLDEVTYVGVLSAC 172
M + ++ D+ T V+S+C
Sbjct: 321 DMQISGVKADDATIATVVSSC 341
Score = 45.1 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 71 REMQTSNIRRDEFTTVRILTT-FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT 129
REM +R E V + F D + L+D+Y +CG ++ A+RVF ++L KD
Sbjct: 117 REM----LREGEQVHVHVFKNGFQTDERIATTLVDLYARCGRLDDARRVFDRLLVKDAQL 172
Query: 130 WTAMIVGLAISGHGDTALDMFSQM 153
+ MI +G + A ++F M
Sbjct: 173 YNTMIAAYMEAGEVELAEELFEVM 196
>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
Length = 514
Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 107/181 (59%), Gaps = 21/181 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV T++ Y G + AR+ F MP+RD + WT+MI GY + ++F +A+ LF+EM
Sbjct: 159 DVYLGNTLIDMYGRLGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMM 218
Query: 75 TSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVE 113
+ ++ D+ T +L+ + DI+VG +LIDMYCKCG VE
Sbjct: 219 AAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVE 278
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
KA VF +M KD +WT++I GLA++G ++ALD+FSQMLR ++ T+VG+L AC
Sbjct: 279 KALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACA 338
Query: 174 H 174
H
Sbjct: 339 H 339
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 21/176 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
++ Y GQ+ A++ F M +RD V W +I GY + N+++E L LF M +NI+
Sbjct: 63 NALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIK 122
Query: 80 RDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVEKAQRV 118
D T V+I+ ++ D+++G LIDMY + G++ A+++
Sbjct: 123 ADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRLGNLTAARKL 182
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
F M ++D +WT+MI G + + A+ +F +M+ A ++ D+VT VLSAC H
Sbjct: 183 FDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAH 238
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%)
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
F + +FV ALI MY CG + AQ++F ML +D +W +I G + L +F
Sbjct: 55 FESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFD 114
Query: 152 QMLRASIRLDEVTYVGVLSACTH 174
M A+I+ D VT V ++ AC+H
Sbjct: 115 AMTAANIKADAVTMVKIILACSH 137
Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 64/149 (42%), Gaps = 20/149 (13%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQM----PERDYVLWTAMIDGYLR 59
ALE+F MK+KD +SWT+++SG G + A F+QM + + + ++
Sbjct: 280 ALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAH 339
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119
+ L F M++ + V + + ++D+ + G+++KA
Sbjct: 340 AGLVNKGLEYFESMESVH------GLVPAMKHYG-------CVVDLLSRSGNIDKAYEFI 386
Query: 120 WKM-LRKDKFTWTAMIVGLAISGHGDTAL 147
KM + D W ++ + HG+ L
Sbjct: 387 KKMPIVPDVVVWRILLSACKL--HGNVVL 413
>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 953
Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats.
Identities = 72/181 (39%), Positives = 106/181 (58%), Gaps = 21/181 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ISW +++SGY+ VD A+ F MPE+D V W++MI GY + + F E L LF+EMQ
Sbjct: 441 DLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQ 500
Query: 75 TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVE 113
S + DE T V +++ ++ +G LIDMY KCG VE
Sbjct: 501 MSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVE 560
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
A VF+ M+ K TW A+I+GLA++G +++LDMFS M + + +E+T++GVL AC
Sbjct: 561 TALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACR 620
Query: 174 H 174
H
Sbjct: 621 H 621
Score = 81.3 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 65/255 (25%), Positives = 95/255 (37%), Gaps = 83/255 (32%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER--------------- 45
M A +F D +SW +I++GYI G V+ A+ + QMPER
Sbjct: 264 MTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMR 323
Query: 46 ----------------DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
D V W+A+I + + + EA+ F M + DE V L
Sbjct: 324 GLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSAL 383
Query: 90 TTFNNDIFVGI---------------------ALIDMYCKCGD----------------- 111
+ N + V + ALI MY KCGD
Sbjct: 384 SACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLI 443
Query: 112 --------------VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
V+ A+ +F M KD +W++MI G A + D L +F +M +
Sbjct: 444 SWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSG 503
Query: 158 IRLDEVTYVGVLSAC 172
+ DE T V V+SAC
Sbjct: 504 FKPDETTLVSVISAC 518
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 71/162 (43%), Gaps = 18/162 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ DV T+++ + + A + F + D V W +++ GY+ + EA ++ +
Sbjct: 245 DSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQ 304
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA 132
M I ++I ++ G V +A ++F +ML KD TW+A
Sbjct: 305 MP------------------ERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSA 346
Query: 133 MIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+I + + A+ F M + + +DEV V LSAC +
Sbjct: 347 LIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACAN 388
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 63/131 (48%), Gaps = 11/131 (8%)
Query: 35 ARQYFAQM--PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT-- 90
+R+ + Q P + L+ +M+ YL + + L + Q +IRR E+ ++
Sbjct: 184 SRRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLI----QACSIRRSEWEAKQVHNHV 239
Query: 91 ---TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
F++D++V LI+ + C ++ A RVF + D +W +++ G G+ + A
Sbjct: 240 LKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAK 299
Query: 148 DMFSQMLRASI 158
++ QM SI
Sbjct: 300 HIYHQMPERSI 310
>gi|255564188|ref|XP_002523091.1| magnesium/proton exchanger, putative [Ricinus communis]
gi|223537653|gb|EEF39276.1| magnesium/proton exchanger, putative [Ricinus communis]
Length = 1015
Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats.
Identities = 73/197 (37%), Positives = 113/197 (57%), Gaps = 25/197 (12%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
FA +IF + D+ SW +I++ + G VD+AR F MPER+ + W+ MI+G+++
Sbjct: 134 FARQIFDEIAQPDLPSWNSIINASVKVGLVDVARGLFDVMPERNVITWSCMINGFVKCGE 193
Query: 63 FREALTLFREMQTSNIRR---DEFTTVRILTTFNN---------------------DIFV 98
++EAL LFREMQ +R +EFT +L+ DI +
Sbjct: 194 YKEALALFREMQMLEVRDVKPNEFTMSSVLSACGRLGALEHGKWAHAYIEKCEMKIDIVL 253
Query: 99 GIALIDMYCKCGDVEKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
G +LIDMY KCG +++A+ VF + KD W+AMI GLA+ G+G+ L++FS+M+
Sbjct: 254 GTSLIDMYAKCGSIDRARLVFDNLGSNKDVMAWSAMISGLAMHGYGEEGLELFSKMVNQG 313
Query: 158 IRLDEVTYVGVLSACTH 174
+R + VT++ VL AC H
Sbjct: 314 LRPNNVTFLAVLYACVH 330
Score = 41.2 bits (95), Expect = 0.17, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 34/113 (30%)
Query: 94 NDIFVGIALIDMYCKCGDVEKAQRVF----------WK---------------------M 122
+D FV +LI+MY CG+ A+++F W M
Sbjct: 114 HDSFVQTSLINMYSSCGNFSFARQIFDEIAQPDLPSWNSIINASVKVGLVDVARGLFDVM 173
Query: 123 LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR---LDEVTYVGVLSAC 172
++ TW+ MI G G AL +F +M +R +E T VLSAC
Sbjct: 174 PERNVITWSCMINGFVKCGEYKEALALFREMQMLEVRDVKPNEFTMSSVLSAC 226
>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
Length = 738
Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats.
Identities = 71/194 (36%), Positives = 105/194 (54%), Gaps = 22/194 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M+ KD++SWTT++ GY G D AR+ F MP D W A+I Y + +
Sbjct: 286 ARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKP 345
Query: 64 REALTLFREMQ-TSNIRRDEFTTVRILTT---------------------FNNDIFVGIA 101
+EAL +FRE+Q N + +E T L + + +
Sbjct: 346 KEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTS 405
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMY KCG +EKA VF+ + R+D F W+AMI GLA+ GHG A+D+FS+M ++ +
Sbjct: 406 LIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPN 465
Query: 162 EVTYVGVLSACTHN 175
VT+ +L AC+H+
Sbjct: 466 AVTFTNLLCACSHS 479
Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 52/165 (31%), Positives = 82/165 (49%), Gaps = 21/165 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ +++ Y + G +D A F+++ E+D V W +MI G+++ EAL LF+ M+
Sbjct: 165 DLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMK 224
Query: 75 TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVE 113
N R + T V +L+ + ++ + A++DMY KCG +E
Sbjct: 225 MENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLE 284
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
A+R+F KM KD +WT MI G A G D A +F M R I
Sbjct: 285 DARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDI 329
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 22/163 (13%)
Query: 32 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL-- 89
+D A + F Q+P + W +I + + + L +F +M + R T +
Sbjct: 80 LDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIK 139
Query: 90 --------------------TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT 129
+F +D+F+ +LI Y GD++ A VF K++ KD +
Sbjct: 140 AATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVS 199
Query: 130 WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
W +MI G G + AL +F +M + R + VT VGVLSAC
Sbjct: 200 WNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSAC 242
>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Vitis vinifera]
Length = 536
Score = 145 bits (365), Expect = 8e-33, Method: Composition-based stats.
Identities = 76/194 (39%), Positives = 106/194 (54%), Gaps = 21/194 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +F M ++V SW ++SGY+ G ++ AR+ F + P ++ V W AMI GY
Sbjct: 190 MELACHLFDEMTERNVESWNFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHA 249
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
RF E L LF +MQ + ++ D T V +L+ + D FV
Sbjct: 250 GRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVA 309
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+DMY KCG +EKA VF LRKD TW ++I GL+ G G AL +FS+ML +
Sbjct: 310 TALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFK 369
Query: 160 LDEVTYVGVLSACT 173
+EVT+V VLSAC+
Sbjct: 370 PNEVTFVCVLSACS 383
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 49/160 (30%), Positives = 71/160 (44%), Gaps = 18/160 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ T++ Y + G ++ AR +M ERD V W A++ Y A LF EM
Sbjct: 142 DLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELACHLFDEMT 201
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
N+ F +I Y G +E+A+RVF + K+ +W AMI
Sbjct: 202 ERNVESWNF------------------MISGYVGVGLLEEARRVFGETPVKNVVSWNAMI 243
Query: 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
G + +G L +F M A ++ D T V VLSAC H
Sbjct: 244 TGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAH 283
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 34/145 (23%), Positives = 64/145 (44%), Gaps = 21/145 (14%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL----- 89
A F+++P + +W +I Y ALT+F +M +++ D++T L
Sbjct: 61 AHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGS 120
Query: 90 ----------------TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
T +D+F+ LI +Y CG +E A+ + +ML +D +W A+
Sbjct: 121 FSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNAL 180
Query: 134 IVGLAISGHGDTALDMFSQMLRASI 158
+ A G + A +F +M ++
Sbjct: 181 LSAYAERGLMELACHLFDEMTERNV 205
Score = 38.1 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 115 AQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
A +F ++ + + W +I A S + AL +F QML AS+ D+ T+ L +C
Sbjct: 61 AHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSC 118
>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 640
Score = 145 bits (365), Expect = 9e-33, Method: Composition-based stats.
Identities = 73/190 (38%), Positives = 107/190 (56%), Gaps = 21/190 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F D SW ++ GY+ G AR+ F MP+RD V W+ MI+GY++ +RF+E
Sbjct: 193 VFDRTPECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEG 252
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDM 105
L LF++M I +E V L+ + + +G ALIDM
Sbjct: 253 LGLFQDMMGEKIEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDM 312
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y KCG VE+A VF KM K+ W+AMI GLAI+G G AL++FSQM ++ +EVT+
Sbjct: 313 YSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTF 372
Query: 166 VGVLSACTHN 175
+G+L+AC+H+
Sbjct: 373 IGILNACSHS 382
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 25/151 (16%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T ++ Y G V+ A + F +M E++ + W+AMI+G + ++AL LF +M+ ++
Sbjct: 307 TALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVK 366
Query: 80 RDEFTTVRILTTFNNDIFVG----------------------IALIDMYCKCGDVEKAQR 117
+E T + IL ++ V ++D+Y + G +++AQ
Sbjct: 367 PNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQT 426
Query: 118 VFWKM-LRKDKFTWTAMIVGLAISGHGDTAL 147
V M + + W A++ I HGDT L
Sbjct: 427 VIKSMPFKPNSAIWGALLNACRI--HGDTEL 455
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 41/198 (20%), Positives = 68/198 (34%), Gaps = 53/198 (26%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI----------- 78
G + AR F ++ + D + +I Y +A+ + EM S++
Sbjct: 83 GSIPYARFLFYRIRKPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLL 142
Query: 79 --RRDEFTTVRILTTFNNDIF---------VGIALIDMYCKCGDVE-------------- 113
E ++R+ ++ +F V L+ MY CG +E
Sbjct: 143 LKACSEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDG 202
Query: 114 -----------------KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156
A+R+F M +D +W+ MI G L +F M+
Sbjct: 203 ASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGE 262
Query: 157 SIRLDEVTYVGVLSACTH 174
I +E V LSAC H
Sbjct: 263 KIEPNESVLVNALSACAH 280
>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
Length = 648
Score = 144 bits (364), Expect = 9e-33, Method: Composition-based stats.
Identities = 69/193 (35%), Positives = 112/193 (58%), Gaps = 21/193 (10%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A +F + N+ +SWTT++ G+ G ++ AR F +MPERD W A++ GY++ +
Sbjct: 277 LANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQ 336
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIA 101
+EA+ LF EMQ S + +E T V +L+ + + +G +
Sbjct: 337 GKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHKLHLSVALGTS 396
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+DMY KCG+++KA VF ++ ++ TWT+MI GLA GH D A++ F +M+ ++ D
Sbjct: 397 LVDMYAKCGNIKKAICVFNEIPVQNALTWTSMICGLANHGHADEAIEYFQRMIDLGLQPD 456
Query: 162 EVTYVGVLSACTH 174
E+T++GVLSAC H
Sbjct: 457 EITFIGVLSACCH 469
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 63/228 (27%), Positives = 99/228 (43%), Gaps = 63/228 (27%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+GF+ ++F + N + W+ RG + AR+ F + P RD V W +I GY+R
Sbjct: 150 LGFSADVF--VVNAAMHFWSV-------RGPMAFARRLFDESPVRDVVSWNTLIGGYVRS 200
Query: 61 NRFREALTLF-REMQTSN-IRRDEFTTV----------------RILTTFNND-----IF 97
REAL LF R + N +R DE T + R+ +N +
Sbjct: 201 GLPREALELFWRLAEDGNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVR 260
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISG---------------- 141
+ A++DMY KCG +E A VF ++ + +WT MIVG A G
Sbjct: 261 LMNAVMDMYVKCGSLELANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERD 320
Query: 142 ---------------HGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
G A+ +F +M ++ + +E+T V +LSAC+
Sbjct: 321 VFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQ 368
>gi|147771783|emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
Length = 602
Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 109/193 (56%), Gaps = 21/193 (10%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
+A F K+++ W T++ + +++ +Q F MP+RD V W +MI G+ R+ +
Sbjct: 245 YAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQ 304
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIA 101
++EALT F EM+ S + + T + L+ N D + +
Sbjct: 305 YQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSS 364
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMY KCGD++KA ++F + R+D FTWT+++ GLA+ G G+ AL FS+M A ++ D
Sbjct: 365 LIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPD 424
Query: 162 EVTYVGVLSACTH 174
+VT VGVLSAC H
Sbjct: 425 DVTMVGVLSACAH 437
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 75/202 (37%), Gaps = 52/202 (25%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT 85
Y+ G V RQ F +M + VLWT +I Y+ V +AL LFR M+ + D
Sbjct: 136 YVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAV 195
Query: 86 VRILTT---------------------FNNDIFVGIALIDMYCKCG-------------- 110
+++ D FV LI Y +CG
Sbjct: 196 STVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVSSTLISTYGECGSLDYAYRFFQETPM 255
Query: 111 -----------------DVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
++E +++F M +D +W +MI G A G AL F +M
Sbjct: 256 KNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEM 315
Query: 154 LRASIRLDEVTYVGVLSACTHN 175
+ + + +T + LSAC +
Sbjct: 316 EFSGVSPNALTLLSTLSACASH 337
Score = 43.5 bits (101), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%)
Query: 81 DEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAIS 140
+E + T F FV AL+ Y CG V K ++VF +M + WT +I
Sbjct: 111 EEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCV 170
Query: 141 GHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+ AL++F M + D V V+SAC
Sbjct: 171 TFPEKALELFRTMREVGLTPDMVAVSTVVSAC 202
>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
Length = 602
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 109/193 (56%), Gaps = 21/193 (10%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
+A F K+++ W T++ + +++ +Q F MP+RD V W +MI G+ R+ +
Sbjct: 245 YAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQ 304
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIA 101
++EALT F EM+ S + + T + L+ N D + +
Sbjct: 305 YQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSS 364
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMY KCGD++KA ++F + R+D FTWT+++ GLA+ G G+ AL FS+M A ++ D
Sbjct: 365 LIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPD 424
Query: 162 EVTYVGVLSACTH 174
+VT VGVLSAC H
Sbjct: 425 DVTMVGVLSACAH 437
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 75/202 (37%), Gaps = 52/202 (25%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT 85
Y+ G V RQ F +M + VLWT +I Y+ V +AL LFR M+ + D
Sbjct: 136 YVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAI 195
Query: 86 VRILTT---------------------FNNDIFVGIALIDMYCKCG-------------- 110
+++ D FV LI Y +CG
Sbjct: 196 STVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVSSTLISTYGECGSLDYAYRFFQETPM 255
Query: 111 -----------------DVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
++E +++F M +D +W +MI G A G AL F +M
Sbjct: 256 KNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEM 315
Query: 154 LRASIRLDEVTYVGVLSACTHN 175
+ + + +T + LSAC +
Sbjct: 316 EFSGVSPNALTLLSTLSACASH 337
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%)
Query: 81 DEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAIS 140
+E + T F FV AL+ Y CG V K ++VF +M + WT +I
Sbjct: 111 EEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCV 170
Query: 141 GHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+ AL++F M + D V V+SAC
Sbjct: 171 TFPEKALELFRTMREVGLTPDMVAISTVVSAC 202
>gi|413925923|gb|AFW65855.1| hypothetical protein ZEAMMB73_620530 [Zea mays]
Length = 501
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 99/179 (55%), Gaps = 21/179 (11%)
Query: 18 SWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 77
W I+ GY G VD+AR F QM RD + + +MI GY+ R R+AL LF +M+
Sbjct: 306 PWNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHG 365
Query: 78 IRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQ 116
+R D FT V +LT D+++G AL+DMY KCG V++A
Sbjct: 366 MRADNFTVVSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEAT 425
Query: 117 RVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
VF +M +D TWTAMI GLA +G G AL+ F QM R + VTY+ VL+AC+H+
Sbjct: 426 AVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHS 484
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 96/223 (43%), Gaps = 53/223 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A F + KD + W T++ G + G +D AR+ Q PER+ V WT++I GY R R
Sbjct: 159 ARRAFDEIPAKDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRP 218
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN----------DIFVG-----------IAL 102
+A+ F M + + DE + L+ + + VG +AL
Sbjct: 219 ADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVAL 278
Query: 103 IDMYCKCGDVEKAQRVF-----------W---------------------KMLRKDKFTW 130
IDMY KCGD+ +AQ VF W +M +D T+
Sbjct: 279 IDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKLGHVDVARSLFDQMGARDVITF 338
Query: 131 TAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+MI G SG AL +F QM R +R D T V +L+AC
Sbjct: 339 NSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACA 381
Score = 43.5 bits (101), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+DV T ++ Y+ G+VD A F +M ERD WTAMI G ++AL F +
Sbjct: 402 EEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQ 461
Query: 73 MQTSNIRRDEFTTVRILTTFNN 94
M+ + T + +LT ++
Sbjct: 462 MKRDGFQPTSVTYIAVLTACSH 483
>gi|255565773|ref|XP_002523876.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536964|gb|EEF38602.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 384
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 109/189 (57%), Gaps = 21/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
IF ++K K+ +SW T++ GY+ G+ A + F +MPE+D + WT IDG+++ F +A
Sbjct: 154 IFDDLKVKNSVSWNTMIDGYMRNGETGSAMELFDEMPEKDAISWTVFIDGFIKKGHFEQA 213
Query: 67 LTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDM 105
L FREMQ S + D T + +L+ F N++ +G +LIDM
Sbjct: 214 LEWFREMQVSKVEPDYVTIIAVLSACANLGALGLGLWIHRYVLEKEFRNNVRIGNSLIDM 273
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y +CG +E A++VF KML++ +W ++IVG A +G + AL+ F M + + D V++
Sbjct: 274 YSRCGCIELARQVFHKMLKRTLVSWNSIIVGFAANGFAEEALEYFGLMQKEGFKPDGVSF 333
Query: 166 VGVLSACTH 174
G L+AC+H
Sbjct: 334 TGALTACSH 342
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 79/193 (40%), Gaps = 46/193 (23%)
Query: 17 ISWTTIVSGYINRGQVDIARQYFAQMP----ERDYVLWTAMIDGYLRVNRFREALTLFRE 72
I+WT+ +S + GQ+ A F QM E +++ + +I +
Sbjct: 60 IAWTSSISRHCCNGQLPEAASLFTQMRLAAVEPNHITFATLI-----------SFCADFP 108
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF----------W-- 120
Q +I VR L ++ VG AL+DMY KCG V+ A+ +F W
Sbjct: 109 FQGKSIGPSIHAYVRKLGLDTCNVMVGTALVDMYAKCGKVQLARLIFDDLKVKNSVSWNT 168
Query: 121 -------------------KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
+M KD +WT I G GH + AL+ F +M + + D
Sbjct: 169 MIDGYMRNGETGSAMELFDEMPEKDAISWTVFIDGFIKKGHFEQALEWFREMQVSKVEPD 228
Query: 162 EVTYVGVLSACTH 174
VT + VLSAC +
Sbjct: 229 YVTIIAVLSACAN 241
>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 809
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 106/181 (58%), Gaps = 21/181 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ISW +++SGY+ VD A+ F MPE+D V W++MI GY + + F E L LF+EMQ
Sbjct: 306 DLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQ 365
Query: 75 TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVE 113
S + DE T V +++ ++ +G LIDMY KCG VE
Sbjct: 366 MSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVE 425
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
A VF+ M+ K TW A+I+GLA++G +++LDMFS M + + +E+T++GVL AC
Sbjct: 426 TALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACR 485
Query: 174 H 174
H
Sbjct: 486 H 486
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 94/253 (37%), Gaps = 83/253 (32%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER------------------ 45
A +F D +SW +I++GYI G V+ A+ + QMPER
Sbjct: 132 ACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLV 191
Query: 46 -------------DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTF 92
D V W+A+I + + + EA+ F M + DE V L+
Sbjct: 192 VEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSAC 251
Query: 93 NNDIFVGI---------------------ALIDMYCKCGD-------------------- 111
N + V + ALI MY KCGD
Sbjct: 252 ANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWN 311
Query: 112 -----------VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
V+ A+ +F M KD +W++MI G A + D L +F +M + +
Sbjct: 312 SMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKP 371
Query: 161 DEVTYVGVLSACT 173
DE T V V+SAC
Sbjct: 372 DETTLVSVISACA 384
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 21/149 (14%)
Query: 31 QVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM----------------Q 74
+D R+ F + + +W MI Y++ N A TL++ M Q
Sbjct: 27 HIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQ 86
Query: 75 TSNIRRDEFTTVRILTT-----FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT 129
+IRR E+ ++ F++D++V LI+ + C ++ A RVF + D +
Sbjct: 87 ACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVS 146
Query: 130 WTAMIVGLAISGHGDTALDMFSQMLRASI 158
W +++ G G+ + A ++ QM SI
Sbjct: 147 WNSILAGYIEIGNVEEAKHIYHQMPERSI 175
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 71/162 (43%), Gaps = 18/162 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ DV T+++ + + A + F + D V W +++ GY+ + EA ++ +
Sbjct: 110 DSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQ 169
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA 132
M I ++I ++ G V +A ++F +ML KD TW+A
Sbjct: 170 MP------------------ERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSA 211
Query: 133 MIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+I + + A+ F M + + +DEV V LSAC +
Sbjct: 212 LIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACAN 253
>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 111/192 (57%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A IFG M +DV+SWT++V+GY G V+ AR+ F +MP R+ W+ MI+GY + N F
Sbjct: 173 AGRIFGQMPFRDVVSWTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCF 232
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
+A+ LF M+ + +E V ++++ + ++ +G AL
Sbjct: 233 EKAIDLFELMKREGVVANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTAL 292
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY +CG++EKA RVF ++ KD +W+++I GLA+ GH A+ FSQM+R +
Sbjct: 293 VDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRD 352
Query: 163 VTYVGVLSACTH 174
+T VLSAC+H
Sbjct: 353 ITLTAVLSACSH 364
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 86/205 (41%), Gaps = 41/205 (20%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G+A IF ++N ++ + ++ + + A ++ QM + +W I
Sbjct: 69 LGYAYGIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSR--IWPDNIT----- 121
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
F + EM+ + + + + F ND++V +L+ MY CG + A R+F
Sbjct: 122 --FPFLIKASTEMECVVVGEQTHSQI-VRFGFQNDVYVENSLVHMYANCGLIAAAGRIFG 178
Query: 121 KMLRKDKFTWTAMIVG--------------------------LAISGHG-----DTALDM 149
+M +D +WT+M+ G + I+G+ + A+D+
Sbjct: 179 QMPFRDVVSWTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDL 238
Query: 150 FSQMLRASIRLDEVTYVGVLSACTH 174
F M R + +E V V+S+C H
Sbjct: 239 FELMKREGVVANETVMVSVISSCAH 263
>gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 519
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 110/193 (56%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +D++SW +++GY+ +G+++ AR F + P +D V W AMI GY+
Sbjct: 193 ARKLFNEMPERDLVSWNVMITGYVKQGEMESARMLFDEAPVKDVVSWNAMIAGYVVCGLS 252
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN----------------------DIFVGIA 101
++AL LF EM + + DE T + +L+ + +G A
Sbjct: 253 KQALELFNEMCRAGVFPDEVTLLSLLSACADLGDLENGKKVHAKVMEISMGKLSTLLGNA 312
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMY KCG+++++ VFW + KD +W ++IVG+A+ GHG +L +F M R I +
Sbjct: 313 LIDMYAKCGNIKESLDVFWSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQRTKICPN 372
Query: 162 EVTYVGVLSACTH 174
E+T+VGVL AC+H
Sbjct: 373 EITFVGVLVACSH 385
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 85/237 (35%), Gaps = 83/237 (35%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T++V + A Q FAQ+P+ D ++ MI G + A++L+ EM ++
Sbjct: 46 TSLVGPTATPTVTNYAHQLFAQIPQPDTFMYNVMIRGSSQSPNPLRAISLYTEMHRHFVK 105
Query: 80 RDEFT-------------------------------------TVRILTTFNNDIFVGIAL 102
D +T T+ + D+ V +L
Sbjct: 106 GDSYTFPFVLKACTRLFWVNTGSAVHGMVLRLGFGSNAVVRNTLLVFHAKCGDLNVATSL 165
Query: 103 IDMYCKC---------------GDVEKAQRVFWKMLRKDKFTWT---------------- 131
D CK GD++ A+++F +M +D +W
Sbjct: 166 FDDSCKGDVVAWSSLIAGYARRGDLKVARKLFNEMPERDLVSWNVMITGYVKQGEMESAR 225
Query: 132 ---------------AMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
AMI G + G AL++F++M RA + DEVT + +LSAC
Sbjct: 226 MLFDEAPVKDVVSWNAMIAGYVVCGLSKQALELFNEMCRAGVFPDEVTLLSLLSACA 282
>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
Length = 580
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 107/194 (55%), Gaps = 22/194 (11%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
AL FG +K KD++SW IV+G G+++ AR +F QMP RD V W +++ GY
Sbjct: 219 LALRTFGALKEKDIVSWNMIVAGCAKVGELEQARLFFYQMPCRDIVSWNSLVTGYACRGD 278
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIA 101
F L +M + D T + +++ D F+G A
Sbjct: 279 FASVKELIVDMVMEKVIPDTVTMISLVSAATESGALDQGRWAHGWVIRMQIKLDAFLGSA 338
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMYCKCG +E+A RVF ++ +KD WT MI GLA G+G AL++FS+M + + D
Sbjct: 339 LIDMYCKCGSIERASRVFKEINKKDVTVWTTMITGLAFHGYGSKALELFSEM-QEDVSPD 397
Query: 162 EVTYVGVLSACTHN 175
+VT+V VLSAC+H+
Sbjct: 398 DVTFVSVLSACSHS 411
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 77/169 (45%), Gaps = 30/169 (17%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 67
FG ++N T++ Y+ G V +A Q F +MP D V + MI GY + EA+
Sbjct: 97 FGYLQN-------TLIKVYLENGLVRLAHQVFEKMPSPDIVSFNVMIVGYAKKGFGLEAM 149
Query: 68 TLFREMQTSNIRRDEFTTVRIL-----------------------TTFNNDIFVGIALID 104
LF EM + DEFT + +L T ++++ +G AL+D
Sbjct: 150 RLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAVHGWMERRKPTISSNLILGNALLD 209
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
MY KC VE A R F + KD +W ++ G A G + A F QM
Sbjct: 210 MYVKCQKVELALRTFGALKEKDIVSWNMIVAGCAKVGELEQARLFFYQM 258
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 20/160 (12%)
Query: 32 VDIARQYFAQM-PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT 90
+D+A F P + ++ +I + + + E+ L+ + +S D+ T + +L
Sbjct: 16 LDLAITLFNHFTPNPNLFIYNTLISAFSSLKKI-ESFYLYNVLLSSGECPDKQTLLYLLQ 74
Query: 91 TFN----------NDIFVGI--------ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA 132
N I G+ LI +Y + G V A +VF KM D ++
Sbjct: 75 AVNFISQVKQIHCQAIVTGLFSFGYLQNTLIKVYLENGLVRLAHQVFEKMPSPDIVSFNV 134
Query: 133 MIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
MIVG A G G A+ +F +M+ + DE T +G+L +C
Sbjct: 135 MIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSC 174
>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
Length = 506
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 105/192 (54%), Gaps = 22/192 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIA-RQYFAQMPERDYVLWTAMIDGYLRVNR 62
A + M +DV+SW ++S Y RG +++A R+ F + P ++ V W AMI GY R
Sbjct: 162 ARHLLDRMLERDVVSWNALLSAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGR 221
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIA 101
F E L LF +MQ + ++ D T V +L+ + D FV A
Sbjct: 222 FSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATA 281
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+DMY KCG +EKA VF LRKD TW ++I GL+ G G AL +FS+ML + +
Sbjct: 282 LVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPN 341
Query: 162 EVTYVGVLSACT 173
EVT+V VLSAC+
Sbjct: 342 EVTFVCVLSACS 353
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 75/196 (38%), Gaps = 53/196 (27%)
Query: 32 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL-- 89
+ A F+++P + +W +I Y ALT+F +M +++ D++T L
Sbjct: 58 IPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKS 117
Query: 90 -------------------TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKD---- 126
T +D+F+ LI +Y CG +E A+ + +ML +D
Sbjct: 118 CGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSW 177
Query: 127 ----------------------------KFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
+W AMI G + +G L +F M A +
Sbjct: 178 NALLSAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGV 237
Query: 159 RLDEVTYVGVLSACTH 174
+ D T V VLSAC H
Sbjct: 238 KPDNCTLVSVLSACAH 253
>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
Length = 673
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 75/193 (38%), Positives = 112/193 (58%), Gaps = 25/193 (12%)
Query: 4 ALEIFGNMKNKDVIS-WTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A E+F M ++ +IS W ++SG+ G V++AR++F +M ERD + W+AMIDGY++
Sbjct: 224 ARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGC 283
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIA 101
F EAL +F +MQ IR +F +L+ N D +G +
Sbjct: 284 FMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTS 343
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+DMY KCG ++ A VF KM K+ +W AMI GLA+ G + A+D+FS+M I +
Sbjct: 344 LVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DIYPN 400
Query: 162 EVTYVGVLSACTH 174
E+T+VGVL+AC H
Sbjct: 401 EITFVGVLNACAH 413
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 46/131 (35%), Positives = 65/131 (49%), Gaps = 17/131 (12%)
Query: 44 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALI 103
E D V W AMIDGYLR A LF M + +++T+N A+I
Sbjct: 202 EVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRS----------MISTWN-------AMI 244
Query: 104 DMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEV 163
+ +CG VE A+ F +M +D+ +W+AMI G G AL++F QM + IR +
Sbjct: 245 SGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKF 304
Query: 164 TYVGVLSACTH 174
VLSAC +
Sbjct: 305 VLPSVLSACAN 315
>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 742
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 76/197 (38%), Positives = 110/197 (55%), Gaps = 22/197 (11%)
Query: 1 MGFALEIFGNM-KNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR 59
+G A E+F + + + SW ++ GY G VD+AR F QM +RD V + ++I GY+
Sbjct: 288 IGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIH 347
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFV 98
R REAL LF +M+ ++R D FT V +LT + DI++
Sbjct: 348 GGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGALPQGRALHACIEQRLVEVDIYL 407
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
G AL+DMY KCG VE+A VF M +D TW+AMI GLA +G G AL+ F M
Sbjct: 408 GTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKVDGF 467
Query: 159 RLDEVTYVGVLSACTHN 175
+ + VTY+ +L+AC+H+
Sbjct: 468 QPNSVTYIAILTACSHS 484
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 68/224 (30%), Positives = 94/224 (41%), Gaps = 53/224 (23%)
Query: 2 GFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVN 61
G A F ++ KD ++WTT++SG G +D A P R+ + WT +I GY R
Sbjct: 157 GDARRAFDDIPVKDAVAWTTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAG 216
Query: 62 RFREALTLFREMQTSNIRRDEFTTVRILTTFNN--DIFVG-------------------I 100
R EA+ F M + I DE T + +L+ D+ G +
Sbjct: 217 RAAEAVDCFNSMLSDGIEPDEVTVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVV 276
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLR-KDKFTWTAMIVGLAISGHGDT-------------- 145
ALIDMY KCGD+ +A VF + R + +W AMI G GH D
Sbjct: 277 ALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLV 336
Query: 146 -----------------ALDMFSQMLRASIRLDEVTYVGVLSAC 172
AL +F QM R +R D T V +L+AC
Sbjct: 337 TFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTAC 380
>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 73/193 (37%), Positives = 105/193 (54%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M KD++SWTT++ GY G+ D A+ F MP +D W A+I Y + +
Sbjct: 291 AKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKP 350
Query: 64 REALTLFREMQTSNIRR-DEFTTVRILTT---------------------FNNDIFVGIA 101
+EAL LF E+Q S + DE T V L+ + + +
Sbjct: 351 KEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTS 410
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMYCKCGD++KA VF + RKD F W+AMI GLA+ GHG A+ +FS+M ++ +
Sbjct: 411 LIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPN 470
Query: 162 EVTYVGVLSACTH 174
VT+ +L AC+H
Sbjct: 471 AVTFTNILCACSH 483
Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 61/213 (28%), Positives = 91/213 (42%), Gaps = 53/213 (24%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV +++ Y G++ + + F +P RD V W +MI +++ EAL LF+EM+
Sbjct: 170 DVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEME 229
Query: 75 TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVE 113
T N++ + T V +L+ + + A++DMY KCG VE
Sbjct: 230 TQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVE 289
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM-------------------- 153
A+R+F KM KD +WT M+VG A G D A +F M
Sbjct: 290 DAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGK 349
Query: 154 ------------LRASIRLDEVTYVGVLSACTH 174
L + + DEVT V LSAC
Sbjct: 350 PKEALELFHELQLSKTAKPDEVTLVSTLSACAQ 382
Score = 76.3 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 26/165 (15%)
Query: 32 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF-REMQTSNIRRDEFT------ 84
+D A+Q F Q+P + W +I Y + ++L +F R + S D+FT
Sbjct: 85 LDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIK 144
Query: 85 -----------------TVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDK 127
+++L +D+F+ +LI Y KCG++ RVF + R+D
Sbjct: 145 AASELEELFTGKAFHGMVIKVL--LGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDV 202
Query: 128 FTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+W +MI G + AL++F +M +++ + +T VGVLSAC
Sbjct: 203 VSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSAC 247
>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
Length = 744
Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats.
Identities = 71/179 (39%), Positives = 101/179 (56%), Gaps = 21/179 (11%)
Query: 18 SWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 77
SW I+ GY G VD+AR F +M RD + + +M+ GY+ + REAL LF M+ +
Sbjct: 308 SWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHD 367
Query: 78 IRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQ 116
+R D FT V +LT DI++G AL+DMY KCG V++A
Sbjct: 368 LRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEAT 427
Query: 117 RVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
VF +M ++D TWTAMI GLA +G G AL+ F QM + + V+Y+ VL+AC+H+
Sbjct: 428 IVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHS 486
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 66/222 (29%), Positives = 97/222 (43%), Gaps = 53/222 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A F + KD ++WT ++SG G + + +Q P RD + WT++I Y R NR
Sbjct: 161 ARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRA 220
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFN--NDIFVG-------------------IAL 102
REA+ F+ M + I DE T + +L+ D+ +G +AL
Sbjct: 221 REAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVAL 280
Query: 103 IDMYCKCGDVEKAQRVF-----------W---------------------KMLRKDKFTW 130
IDMY KCGD AQ+VF W +M +D T+
Sbjct: 281 IDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITF 340
Query: 131 TAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+M+ G SG AL +F M R +R+D T V +L+AC
Sbjct: 341 NSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTAC 382
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 39/158 (24%), Positives = 70/158 (44%), Gaps = 12/158 (7%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ T ++ Y+ G+VD A F +M +RD WTAMI G + AL F +M+
Sbjct: 406 DIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMR 465
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
+ + + + +LT ++ + + R+ + + + + + MI
Sbjct: 466 CDGFQPNSVSYIAVLTACSHSCLLNEGRLYF--------DEMRILYNIHPQIEH-YGCMI 516
Query: 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
L SG D A+D+ M I+ + V + +LSAC
Sbjct: 517 DLLGRSGLLDEAMDLVKTM---PIQPNAVIWASILSAC 551
>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
Length = 799
Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats.
Identities = 71/179 (39%), Positives = 101/179 (56%), Gaps = 21/179 (11%)
Query: 18 SWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 77
SW I+ GY G VD+AR F +M RD + + +M+ GY+ + REAL LF M+ +
Sbjct: 308 SWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHD 367
Query: 78 IRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQ 116
+R D FT V +LT DI++G AL+DMY KCG V++A
Sbjct: 368 LRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEAT 427
Query: 117 RVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
VF +M ++D TWTAMI GLA +G G AL+ F QM + + V+Y+ VL+AC+H+
Sbjct: 428 IVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHS 486
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 66/222 (29%), Positives = 97/222 (43%), Gaps = 53/222 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A F + KD ++WT ++SG G + + +Q P RD + WT++I Y R NR
Sbjct: 161 ARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRA 220
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFN--NDIFVG-------------------IAL 102
REA+ F+ M + I DE T + +L+ D+ +G +AL
Sbjct: 221 REAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVAL 280
Query: 103 IDMYCKCGDVEKAQRVF-----------W---------------------KMLRKDKFTW 130
IDMY KCGD AQ+VF W +M +D T+
Sbjct: 281 IDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITF 340
Query: 131 TAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+M+ G SG AL +F M R +R+D T V +L+AC
Sbjct: 341 NSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTAC 382
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 39/158 (24%), Positives = 70/158 (44%), Gaps = 12/158 (7%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ T ++ Y+ G+VD A F +M +RD WTAMI G + AL F +M+
Sbjct: 406 DIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMR 465
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
+ + + + +LT ++ + + R+ + + + + + MI
Sbjct: 466 CDGFQPNSVSYIAVLTACSHSCLLNEGRLYF--------DEMRILYNIHPQIEH-YGCMI 516
Query: 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
L SG D A+D+ M I+ + V + +LSAC
Sbjct: 517 DLLGRSGLLDEAMDLVKTM---PIQPNAVIWASILSAC 551
>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
[Vitis vinifera]
gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats.
Identities = 74/195 (37%), Positives = 110/195 (56%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M AL +F M K++++ T +V+GY GQ++ AR F QM ++D V W+AMI GY
Sbjct: 274 MDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAES 333
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
+ +EAL LF EMQ+ I+ D+ T + ++T F + +
Sbjct: 334 DSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPIN 393
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALI+MY KCG +E+A+R+F KM RK+ +WT MI A+ G +AL F QM +I
Sbjct: 394 NALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIE 453
Query: 160 LDEVTYVGVLSACTH 174
+ +T+VGVL AC+H
Sbjct: 454 PNGITFVGVLYACSH 468
Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 64/214 (29%), Positives = 93/214 (43%), Gaps = 52/214 (24%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ D T +V Y G++ AR F +M RD V W+ MIDGY + F +AL LF E
Sbjct: 154 DSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEE 213
Query: 73 MQTSNIRRDEFTTVRILTT-----------------FNNDIFVG----IALIDMYCKCGD 111
M+ N+ DE +L+ N+I V AL+ MY CG
Sbjct: 214 MKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGS 273
Query: 112 -------------------------------VEKAQRVFWKMLRKDKFTWTAMIVGLAIS 140
+E A+ VF +M++KD W+AMI G A S
Sbjct: 274 MDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAES 333
Query: 141 GHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
AL++F++M I+ D+VT + V++AC H
Sbjct: 334 DSPQEALNLFNEMQSLGIKPDQVTMLSVITACAH 367
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 21/172 (12%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
++S +D A F +P+ + L + R + L ++ M+T + D
Sbjct: 62 VISSCALSSSLDYALSVFNLIPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVD 121
Query: 82 EFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
F+ +L F++D FV L+ MY CG + +A+ +F
Sbjct: 122 RFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFD 181
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
KM +D TW+ MI G SG + AL +F +M ++ DE+ VLSAC
Sbjct: 182 KMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSAC 233
>gi|15228028|ref|NP_181820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206274|sp|Q9SJG6.1|PP200_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g42920, chloroplastic; Flags: Precursor
gi|4512663|gb|AAD21717.1| hypothetical protein [Arabidopsis thaliana]
gi|20197867|gb|AAM15291.1| hypothetical protein [Arabidopsis thaliana]
gi|110738441|dbj|BAF01146.1| hypothetical protein [Arabidopsis thaliana]
gi|330255093|gb|AEC10187.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 111/193 (57%), Gaps = 21/193 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A IF M DV++W +++ G+ G +D A+ F +MP+R+ V W +MI G++R RF
Sbjct: 180 AWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRF 239
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
++AL +FREMQ +++ D FT V +L F + V AL
Sbjct: 240 KDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTAL 299
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMYCKCG +E+ VF +K W +MI+GLA +G + A+D+FS++ R+ + D
Sbjct: 300 IDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDS 359
Query: 163 VTYVGVLSACTHN 175
V+++GVL+AC H+
Sbjct: 360 VSFIGVLTACAHS 372
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 84/213 (39%), Gaps = 55/213 (25%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQM--------PERDYVLWTA 52
M +A +F + +K+ W TI+ G+ ++A F M P+R + + +
Sbjct: 74 MNYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQR--LTYPS 131
Query: 53 MIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDV 112
+ Y R+ + R+ R++ I+ +D F+ ++ MY CG +
Sbjct: 132 VFKAYGRLGQARDG----RQLHGMVIKEG----------LEDDSFIRNTMLHMYVTCGCL 177
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDT--------------------------- 145
+A R+F M+ D W +MI+G A G D
Sbjct: 178 IEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNG 237
Query: 146 ----ALDMFSQMLRASIRLDEVTYVGVLSACTH 174
ALDMF +M ++ D T V +L+AC +
Sbjct: 238 RFKDALDMFREMQEKDVKPDGFTMVSLLNACAY 270
>gi|224136482|ref|XP_002326871.1| predicted protein [Populus trichocarpa]
gi|222835186|gb|EEE73621.1| predicted protein [Populus trichocarpa]
Length = 581
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 112/196 (57%), Gaps = 22/196 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +F M ++VISWT+++ GY N G V AR F MPE++ V W AMI GY +
Sbjct: 215 MESARSLFDEMPERNVISWTSMIYGYCNNGDVLSARFLFDAMPEKNLVSWNAMIGGYCQN 274
Query: 61 NRFREALTLFREMQTSNI-RRDEFTTVRILTT---------------------FNNDIFV 98
+ EAL LFRE+Q+S + +E T V IL + + V
Sbjct: 275 KQPHEALKLFRELQSSTVFEPNEVTVVSILPAIATLGALELGEWVHRFVQRKKLDAAVNV 334
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
+L+DMY KCG++ KA++VF ++ +K+ TW A+I G A++G AL+ FS+M + I
Sbjct: 335 CTSLVDMYLKCGEISKARKVFSEIPKKETATWNALINGFAMNGLASEALEAFSEMQQEGI 394
Query: 159 RLDEVTYVGVLSACTH 174
+ +++T GVLSAC+H
Sbjct: 395 KPNDITMTGVLSACSH 410
>gi|222636196|gb|EEE66328.1| hypothetical protein OsJ_22569 [Oryza sativa Japonica Group]
Length = 1287
Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats.
Identities = 74/196 (37%), Positives = 106/196 (54%), Gaps = 22/196 (11%)
Query: 2 GFALEIFGNM-KNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
G A E+F + + + SW I+ GY G VD+AR F QM RD + + +MI GY+
Sbjct: 230 GHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHS 289
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
+ REAL LF M+ ++R D FT V +L+ DI++G
Sbjct: 290 GQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIG 349
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+DMY KCG V +A VF +M ++D WTAMI GLA +G G L+ F QM +
Sbjct: 350 TALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQ 409
Query: 160 LDEVTYVGVLSACTHN 175
+ V+Y+ VL+AC+H+
Sbjct: 410 PNPVSYIAVLTACSHS 425
Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 67/218 (30%), Positives = 97/218 (44%), Gaps = 53/218 (24%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 67
F + KD +SWT ++SG G + AR AQ P RD + WT++I Y R +R +EA+
Sbjct: 104 FDEIPVKDAVSWTMVISGLAKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAV 163
Query: 68 TLFREMQTSNIRRDEFTTVRILTTFNN--DIFVG-------------------IALIDMY 106
F+ M + I D+ T + +L+ + D+ +G +ALIDMY
Sbjct: 164 DCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLHLLVKEKGMSMSENLVVALIDMY 223
Query: 107 CKCGDVEKAQRVF-----------W---------------------KMLRKDKFTWTAMI 134
KCGD A+ VF W +M +D T+ +MI
Sbjct: 224 AKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMI 283
Query: 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
G SG AL +F M R +R+D T V +LSAC
Sbjct: 284 TGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSAC 321
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 39/176 (22%), Positives = 73/176 (41%), Gaps = 23/176 (13%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
TT++ Y D + F ++P ++I L N F AL + M +
Sbjct: 975 TTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLITSSLGCNMFDAALEILHCMIVEGVT 1034
Query: 80 RDEFT---TVRILTT--------------------FNNDIFVGIALIDMYCKCGDVEKAQ 116
D+ T T++ ++ F D+ V +LI Y G + +
Sbjct: 1035 PDDVTFSATMKAISLSASPSLTSCQMLHSCLVKLGFEMDMAVCSSLITAYACAGQLSSSH 1094
Query: 117 RVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+F +L + +TA+I A G G A+++F QM+ + ++ D VT++ ++ C
Sbjct: 1095 LIFEGLLDPNVICFTAIISACARYGDGARAMELFDQMVSSGLKPDNVTFLCAIAGC 1150
Score = 42.4 bits (98), Expect = 0.068, Method: Composition-based stats.
Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 9/169 (5%)
Query: 5 LEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFR 64
++ ++ ++DVISW +I+S Y +RG + A Y QM LW + V F
Sbjct: 889 VKALNDILSEDVISWNSILSMYADRGHMKEAVYYLKQM------LWHGKMPS---VRSFV 939
Query: 65 EALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124
L L + + V L + + V LIDMY KC + + +F ++
Sbjct: 940 SLLALSGKTGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPS 999
Query: 125 KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
++I D AL++ M+ + D+VT+ + A +
Sbjct: 1000 IALECCNSLITSSLGCNMFDAALEILHCMIVEGVTPDDVTFSATMKAIS 1048
>gi|218198855|gb|EEC81282.1| hypothetical protein OsI_24392 [Oryza sativa Indica Group]
Length = 1349
Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats.
Identities = 74/196 (37%), Positives = 106/196 (54%), Gaps = 22/196 (11%)
Query: 2 GFALEIFGNM-KNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
G A E+F + + + SW I+ GY G VD+AR F QM RD + + +MI GY+
Sbjct: 292 GHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHS 351
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
+ REAL LF M+ ++R D FT V +L+ DI++G
Sbjct: 352 GQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIG 411
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+DMY KCG V +A VF +M ++D WTAMI GLA +G G L+ F QM +
Sbjct: 412 TALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQ 471
Query: 160 LDEVTYVGVLSACTHN 175
+ V+Y+ VL+AC+H+
Sbjct: 472 PNPVSYIAVLTACSHS 487
Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 67/218 (30%), Positives = 97/218 (44%), Gaps = 53/218 (24%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 67
F + KD +SWT ++SG G + AR AQ P RD + WT++I Y R +R +EA+
Sbjct: 166 FDEIPVKDAVSWTMVISGLAKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAV 225
Query: 68 TLFREMQTSNIRRDEFTTVRILTTFNN--DIFVG-------------------IALIDMY 106
F+ M + I D+ T + +L+ + D+ +G +ALIDMY
Sbjct: 226 DCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLHSLVKEKGMSMSENLVVALIDMY 285
Query: 107 CKCGDVEKAQRVF-----------W---------------------KMLRKDKFTWTAMI 134
KCGD A+ VF W +M +D T+ +MI
Sbjct: 286 AKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMI 345
Query: 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
G SG AL +F M R +R+D T V +LSAC
Sbjct: 346 TGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSAC 383
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/176 (22%), Positives = 74/176 (42%), Gaps = 23/176 (13%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
TT++ Y D + F ++P ++I LR N F AL + M +
Sbjct: 1037 TTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLITSSLRCNMFDAALEILHCMIVEGVT 1096
Query: 80 RDEFT---TVRILTT--------------------FNNDIFVGIALIDMYCKCGDVEKAQ 116
D+ T T++ ++ F D+ V +LI Y G + +
Sbjct: 1097 PDDVTFSATMKAISLSASPSLTSCQMLHSCLVKLGFEMDMAVCSSLITAYACAGQLSSSH 1156
Query: 117 RVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+F +L + +TA+I A G G A+++F QM+ + ++ D VT++ ++ C
Sbjct: 1157 LIFEGLLDPNVICFTAIISACARYGDGARAMELFDQMVSSGLKPDNVTFLCAIAGC 1212
Score = 42.4 bits (98), Expect = 0.079, Method: Composition-based stats.
Identities = 39/169 (23%), Positives = 70/169 (41%), Gaps = 9/169 (5%)
Query: 5 LEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFR 64
++ ++ ++DVISW +I+S Y +RG + A Y QM LW + + F
Sbjct: 951 VKALNDILSEDVISWNSILSMYADRGHMKEAVYYLKQM------LWHGKMPS---IRSFV 1001
Query: 65 EALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124
L L + + V L + + V LIDMY KC + + +F ++
Sbjct: 1002 SLLALSGKTGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPS 1061
Query: 125 KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
++I D AL++ M+ + D+VT+ + A +
Sbjct: 1062 IALECCNSLITSSLRCNMFDAALEILHCMIVEGVTPDDVTFSATMKAIS 1110
>gi|255541070|ref|XP_002511599.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548779|gb|EEF50268.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 429
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 109/196 (55%), Gaps = 22/196 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +F M ++VISWT+++ GY + G V AR F MPER+ W AMI GY +
Sbjct: 201 MESAQSLFDKMPARNVISWTSMIYGYCSGGDVLTARSLFDAMPERNLFSWNAMIGGYSQN 260
Query: 61 NRFREALTLFREMQTSNI-RRDEFTTVRILTTF---------------------NNDIFV 98
N+ EAL LF EMQ+ + D+ T V +L + I V
Sbjct: 261 NKSHEALKLFHEMQSRTLFEPDKVTVVSVLPAIADLGALDLGSWIHQFARLKKIDRSINV 320
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
AL+DMY KCG++ KA+RVF M +K++ +W A+I G A++G D AL FS+M R +
Sbjct: 321 CTALVDMYAKCGEMLKARRVFDSMPKKEEASWNALINGFAVNGCADEALTAFSEMKREGV 380
Query: 159 RLDEVTYVGVLSACTH 174
+ ++VT + VLSAC H
Sbjct: 381 KPNDVTMISVLSACNH 396
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 19/169 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M + V+SWT ++ G + G + AR F QMPE+D + AM+DGY++
Sbjct: 142 ARKMFDEMAERGVVSWTALIGGCMRSGDMGNARILFDQMPEKDSAAYNAMLDGYVKAGDM 201
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
A +LF +M N + ++I YC GDV A+ +F M
Sbjct: 202 ESAQSLFDKMPARN------------------VISWTSMIYGYCSGGDVLTARSLFDAMP 243
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQML-RASIRLDEVTYVGVLSA 171
++ F+W AMI G + + AL +F +M R D+VT V VL A
Sbjct: 244 ERNLFSWNAMIGGYSQNNKSHEALKLFHEMQSRTLFEPDKVTVVSVLPA 292
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 23/155 (14%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERD-YVLWTAMIDGYLRVNRFREALTLFREM-QTSNIR 79
I S Y + + ARQ F P +D L +MI ++ + +F E+ TL++++ + +
Sbjct: 26 IPSVYESLAIIQHARQVFDNRPHKDDTFLCNSMIKAHVGMRQFYESFTLYQDLRKGTGFL 85
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
D FT + + F D++V AL+DMY K G++ A+++
Sbjct: 86 PDNFTFTALAKSCGLNMAVWEGFEIHNHVLKMGFGLDLYVSTALVDMYAKFGELCMARKM 145
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
F +M + +WTA+I G SG A +F QM
Sbjct: 146 FDEMAERGVVSWTALIGGCMRSGDMGNARILFDQM 180
>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
isoform 1 [Vitis vinifera]
Length = 672
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 112/193 (58%), Gaps = 25/193 (12%)
Query: 4 ALEIFGNMKNKDVIS-WTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A E+F M ++ +IS W ++SG+ G V++AR++F +M ERD + W+AMIDGY++
Sbjct: 223 ARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGC 282
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIA 101
F EAL +F +MQ IR +F +L+ N D +G +
Sbjct: 283 FMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTS 342
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+DMY KCG ++ A VF KM K+ +W AMI GLA+ G + A+D+FS+M I +
Sbjct: 343 LVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DINPN 399
Query: 162 EVTYVGVLSACTH 174
E+T+VGVL+AC H
Sbjct: 400 EITFVGVLNACAH 412
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 64/130 (49%), Gaps = 17/130 (13%)
Query: 44 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALI 103
E D V W AMIDGYLR A LF M + +++T+N A+I
Sbjct: 201 EVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRS----------MISTWN-------AMI 243
Query: 104 DMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEV 163
+ +CG VE A+ F +M +D+ +W+AMI G G AL++F QM + IR +
Sbjct: 244 SGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKF 303
Query: 164 TYVGVLSACT 173
VLSAC
Sbjct: 304 VLPSVLSACA 313
>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 518
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 109/189 (57%), Gaps = 21/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F + ++D++SW T++ GYI G V++A + F MPE++ + WT+MI G++R +EA
Sbjct: 168 LFDLLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEA 227
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDM 105
L L ++M + I+ D+ T L+ D +G ALIDM
Sbjct: 228 LCLLQQMLVAGIKPDKITLSCSLSACAGLGALEQGKWIHTYIGKNKIKIDPVLGCALIDM 287
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y KCG+++KA VF K+ +K +TWTA+I G A+ G G ALD F+QM +A I+ T+
Sbjct: 288 YVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAVHGKGSEALDWFTQMQKAGIKPTSFTF 347
Query: 166 VGVLSACTH 174
VL+AC+H
Sbjct: 348 TAVLTACSH 356
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 86/217 (39%), Gaps = 52/217 (23%)
Query: 9 GNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALT 68
G +++K +S + + AR F ++ + V+W MI Y N EAL
Sbjct: 38 GTIRHKLTVSRLLTTYASMEFSNLTYARMVFDRISSPNTVMWNTMIRAYSNSNDPEEALL 97
Query: 69 LFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL----- 102
L+ +M +I + +T +L F ++++ +L
Sbjct: 98 LYHQMLHHSIPHNAYTFPFLLKACSALSALAETHQIHVQIIKRGFGSEVYATNSLLRVYA 157
Query: 103 --------------------------IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVG 136
ID Y KCG+VE A ++F M K+ +WT+MIVG
Sbjct: 158 ISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPEKNVISWTSMIVG 217
Query: 137 LAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+G AL + QML A I+ D++T LSAC
Sbjct: 218 FVRTGMHKEALCLLQQMLVAGIKPDKITLSCSLSACA 254
Score = 35.4 bits (80), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP----ERDYVLWTAMIDG 56
M AL +F ++ K V +WT I+ G+ G+ A +F QM + +TA++
Sbjct: 294 MKKALLVFSKLEKKCVYTWTAIIGGFAVHGKGSEALDWFTQMQKAGIKPTSFTFTAVLTA 353
Query: 57 YLRVNRFREALTLFREMQT 75
E +LF M T
Sbjct: 354 CSHTGLVEEGKSLFESMST 372
>gi|255542916|ref|XP_002512521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548482|gb|EEF49973.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 422
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 106/192 (55%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F M+++ V SW +VSG G V AR+ F M E+D + W++MIDGY++ +
Sbjct: 214 AKELFEKMEDRSVGSWNVMVSGLAKNGMVKEARELFNDMREKDEISWSSMIDGYIKGGNY 273
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
+EAL +F MQ IR +F +L N D +G AL
Sbjct: 274 KEALEVFNVMQEEKIRPKKFVLSSVLAACANLGALDQGRWIHAYVKKNPMYLDAVLGTAL 333
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY KCG ++ A VF M K+ FTW AMI GLA+ G + A+ +F +M + +R +E
Sbjct: 334 VDMYAKCGRLDMAWDVFETMKEKEVFTWNAMICGLAMHGRAEDAIKLFLKMQKEKVRSNE 393
Query: 163 VTYVGVLSACTH 174
+T+VG+L+AC H
Sbjct: 394 ITFVGLLNACAH 405
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 18/149 (12%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT 85
Y G + AR+ + E D + + AMIDGY + A LF +M+
Sbjct: 174 YATLGHMAAARRMLDEDGESDVICFNAMIDGYYKFGDVDSAKELFEKMED---------- 223
Query: 86 VRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDT 145
R + ++N ++ K G V++A+ +F M KD+ +W++MI G G+
Sbjct: 224 -RSVGSWN-------VMVSGLAKNGMVKEARELFNDMREKDEISWSSMIDGYIKGGNYKE 275
Query: 146 ALDMFSQMLRASIRLDEVTYVGVLSACTH 174
AL++F+ M IR + VL+AC +
Sbjct: 276 ALEVFNVMQEEKIRPKKFVLSSVLAACAN 304
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 66/161 (40%), Gaps = 23/161 (14%)
Query: 21 TIVSGYINR--GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 78
T++ Y N +D+A F +P+ + ++ +I L + +A+ + +M +N
Sbjct: 66 TLLKCYANPHFKNIDLAFTVFDHVPKPNVFVYNIIIKACLDNDEPFKAICFYYKMVAANA 125
Query: 79 RRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQR 117
R ++FT +L D+ + A I MY G + A+R
Sbjct: 126 RPNKFTYPSLLKACGVATAAKEGVQLHGHVIKQGLTGDVHIRSAGIQMYATLGHMAAARR 185
Query: 118 VFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
+ + D + AMI G G D+A ++F +M S+
Sbjct: 186 MLDEDGESDVICFNAMIDGYYKFGDVDSAKELFEKMEDRSV 226
>gi|356570285|ref|XP_003553320.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26630,
chloroplastic-like [Glycine max]
Length = 474
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 110/189 (58%), Gaps = 21/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M ++V +WTT+++G++ G++D AR+ F QMP ++ V WTA+IDGY++ + EA
Sbjct: 179 VFDKMCVRNVFAWTTVIAGFVACGKLDTARELFEQMPSKNVVSWTAIIDGYVKHKQPIEA 238
Query: 67 LTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDM 105
LF MQ N+R +E+T V ++ F + F+G ALIDM
Sbjct: 239 FDLFERMQADNVRPNEYTLVSLVRACTEMGSLKLGRRVHDFALKNGFELEPFLGTALIDM 298
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y KCG+++ A+ VF M + TW MI L + G+ D AL +F +M +A+ D +T+
Sbjct: 299 YSKCGNLDDARTVFDMMQMRTLATWNTMITSLGVHGYRDEALSIFEEMEKANEVPDAITF 358
Query: 166 VGVLSACTH 174
VGVLSAC +
Sbjct: 359 VGVLSACVY 367
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 62/150 (41%), Gaps = 21/150 (14%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFT----- 84
G++ A F Q+ D W MI Y + A LF+ M D+FT
Sbjct: 70 GKMKYATLVFDQLNAPDVFTWNVMIRAYTIGGSPKMAFLLFKAMLYQGFAPDKFTYPCVI 129
Query: 85 ----------------TVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
+ I F D++V ++++Y KC +V+ VF KM ++ F
Sbjct: 130 NACMAYNALDVGRVAHALAIKMGFWGDLYVQNTMMNLYFKCENVDDGWNVFDKMCVRNVF 189
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASI 158
WT +I G G DTA ++F QM ++
Sbjct: 190 AWTTVIAGFVACGKLDTARELFEQMPSKNV 219
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 7/121 (5%)
Query: 57 YLRVNRFR----EALTLFREMQT-SNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGD 111
YL R R EAL L ++ +++ +R T+ D + LI + G
Sbjct: 14 YLETPRTRFGSEEALVLLKKCSNFKQLKQVHGKIIRYGLTY--DQLLVRKLIQLSPSYGK 71
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
++ A VF ++ D FTW MI I G A +F ML D+ TY V++A
Sbjct: 72 MKYATLVFDQLNAPDVFTWNVMIRAYTIGGSPKMAFLLFKAMLYQGFAPDKFTYPCVINA 131
Query: 172 C 172
C
Sbjct: 132 C 132
>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Brachypodium distachyon]
Length = 585
Score = 142 bits (357), Expect = 6e-32, Method: Composition-based stats.
Identities = 71/192 (36%), Positives = 111/192 (57%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +D++SW T++ GY RG V +AR+ F +RD W++MI Y +
Sbjct: 135 ARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCS 194
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
+EAL L+REM+ + + D + V +L+ + D+ +G AL
Sbjct: 195 KEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTAL 254
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY KCGD+E + +VF M KD TW++MI+GLA G G AL +FS+M+ ++ +E
Sbjct: 255 VDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNE 314
Query: 163 VTYVGVLSACTH 174
+T++GVL ACTH
Sbjct: 315 ITFIGVLIACTH 326
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 20/161 (12%)
Query: 15 DVISWTTIVSGYINR--GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
D+ T +V Y G++ +AR F + P RD L M+ Y+ EA +F
Sbjct: 82 DLFVRTALVEMYAKTAAGEIALARAAFDEAPRRDVFLCNVMLAAYVARGEVAEARKVFDG 141
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA 132
M R L ++N +I Y GDV A+ +F +D F+W++
Sbjct: 142 MSG-----------RDLVSWN-------TMIHGYAVRGDVGMAREIFDGTRDRDAFSWSS 183
Query: 133 MIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
MI A AL+++ +M A + D ++ V VLSAC+
Sbjct: 184 MISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACS 224
>gi|225434183|ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 513
Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 112/193 (58%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +DV+SW T+VSGY G ++ AR+ F QM ERD + W AMI GY++ ++
Sbjct: 167 AGQVFDEMPLRDVVSWNTMVSGYCLCGDLESARRVFDQMLERDVISWNAMIGGYVQNGKY 226
Query: 64 REALTLFREMQ-TSNIRRDEFTTVRILTTFNN---------------------DIFVGIA 101
+A+ +F EMQ + D+ T V +L+ + ++++G A
Sbjct: 227 SDAIEVFHEMQKVGGVVPDDVTLVSVLSACAHVGALDFGRWIDRFVGWRGRGLNLYLGNA 286
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMY KCG +E+A+R+F M +D +W+ MI G G D A +S+ML ++ +
Sbjct: 287 LIDMYAKCGTMEEARRIFDGMRERDVISWSTMICGSGTHGDADEAFGYYSKMLECGVKPN 346
Query: 162 EVTYVGVLSACTH 174
EVT++G+LSAC+H
Sbjct: 347 EVTFMGLLSACSH 359
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 88/206 (42%), Gaps = 52/206 (25%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYF------AQMPERDYVLWTAMIDGYLRV 60
IF + N +V SW I+ +IN G + A F P + ++T++I +
Sbjct: 67 IFAQLPNPNVFSWNAIIKAHINCGAWEHALNCFNRQLSLPSAPNPNEYIYTSLIKACAGL 126
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDM--------------- 105
+ L + V I + +N+I +G +L+DM
Sbjct: 127 EAIADGLKVH--------------AVVIKSGLDNNIHLGTSLVDMYFKFREPASAGQVFD 172
Query: 106 ----------------YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDM 149
YC CGD+E A+RVF +ML +D +W AMI G +G A+++
Sbjct: 173 EMPLRDVVSWNTMVSGYCLCGDLESARRVFDQMLERDVISWNAMIGGYVQNGKYSDAIEV 232
Query: 150 FSQMLR-ASIRLDEVTYVGVLSACTH 174
F +M + + D+VT V VLSAC H
Sbjct: 233 FHEMQKVGGVVPDDVTLVSVLSACAH 258
>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
Length = 723
Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats.
Identities = 71/178 (39%), Positives = 98/178 (55%), Gaps = 21/178 (11%)
Query: 19 WTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 78
W I+ GY G VDIAR F QM RD + + +MI GY+ R R+AL LF +++ +
Sbjct: 305 WNVIIDGYCKLGHVDIARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQLRRHGM 364
Query: 79 RRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQR 117
R D FT V +LT D+++ AL+DMY KCG V++A
Sbjct: 365 RADNFTVVSLLTACASLGALPQGRALHASIEQRIVEEDVYLVTALVDMYMKCGRVDEATA 424
Query: 118 VFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
VF +M +D TW+AMI GLA +G G AL+ F QM R + VTY+ VL+AC+H+
Sbjct: 425 VFHRMGERDVHTWSAMIAGLAFNGMGMDALESFCQMKRDGFQPTSVTYIAVLTACSHS 482
Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 65/222 (29%), Positives = 95/222 (42%), Gaps = 53/222 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A F + KD + W T++ G + G +D AR+ Q PER+ V WT++I GY R R
Sbjct: 157 ARRAFDEVPVKDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRP 216
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN----------DIFVG-----------IAL 102
+A+ F M + + DE + L+ + + VG + L
Sbjct: 217 ADAVYCFNCMLSDGVEPDEVAVIGALSACSKLKNLEFGRLLHLLVGKKRIQMTDKLVVTL 276
Query: 103 IDMYCKCGDVEKAQRVF-----------W---------------------KMLRKDKFTW 130
IDMY KCGD+ +AQ VF W +M +D T+
Sbjct: 277 IDMYAKCGDIAQAQAVFDAVGRGQKPEPWNVIIDGYCKLGHVDIARSLFDQMGARDVITF 336
Query: 131 TAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+MI G SG AL +F Q+ R +R D T V +L+AC
Sbjct: 337 NSMITGYIHSGRLRDALQLFMQLRRHGMRADNFTVVSLLTAC 378
Score = 43.9 bits (102), Expect = 0.025, Method: Composition-based stats.
Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 22/164 (13%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
+DV T +V Y+ G+VD A F +M ERD W+AMI G +AL F +M
Sbjct: 401 EDVYLVTALVDMYMKCGRVDEATAVFHRMGERDVHTWSAMIAGLAFNGMGMDALESFCQM 460
Query: 74 QTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF----- 128
+ + T + +LT ++ + + ++ F +M K
Sbjct: 461 KRDGFQPTSVTYIAVLTACSHSSL--------------LNEGRQHFNEMRSLHKLHPQIE 506
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+ MI LA SG D A+ + M ++ + V + +LSAC
Sbjct: 507 HYGCMIDLLARSGLLDEAMHLVQTM---PMQPNAVIWASILSAC 547
>gi|224092607|ref|XP_002309680.1| predicted protein [Populus trichocarpa]
gi|222855656|gb|EEE93203.1| predicted protein [Populus trichocarpa]
Length = 500
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 108/193 (55%), Gaps = 21/193 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A IF NM KD++SW +++S YI ++ A F +MP ++ + W M+ G+L+ +
Sbjct: 166 ARSIFDNMAEKDIVSWNSMISAYIQGEDMERACDLFREMPAKNIITWNTMVKGFLQNQLY 225
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
E L LF EM+T+N D T +L+ + V AL
Sbjct: 226 AEVLDLFDEMKTTNCLPDYLTVTGVLSACAHSGSLKKGTEVHIYAIDNGLASSPHVTTAL 285
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG +++ +VF+K KD + W A+I GLA+ GHG AL++F++M + R D+
Sbjct: 286 IDMYAKCGSIQQGLQVFYKSQVKDIYCWNALISGLALHGHGYAALNIFNKMRKNHTRPDD 345
Query: 163 VTYVGVLSACTHN 175
+T++G+LSAC+H+
Sbjct: 346 ITFIGLLSACSHS 358
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 21/137 (15%)
Query: 38 YFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT------ 91
Y +P + W +I ++ +A+ + +Q D FT +L
Sbjct: 6 YNCVLPSPEMRQWNEIIKKHVLNGDAVQAMVTYVNVQEIGFHADNFTFPILLKAAGSWSS 65
Query: 92 ---------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVG 136
F++ +FV AL++MY V A +VF KM KD W +++
Sbjct: 66 PCIGLALHGQTIKAGFSSHVFVQTALLNMYRSHSCVADACKVFEKMPVKDVVAWNSILDA 125
Query: 137 LAISGHGDTALDMFSQM 153
A + D AL +F+ M
Sbjct: 126 YASTDQMDDALKVFNSM 142
>gi|356502600|ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 518
Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 111/193 (57%), Gaps = 21/193 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M +SW+ ++SGY G VD AR +F + PE+D +W AMI GY++ + F
Sbjct: 159 ARHVFDEMPRLSAVSWSVMISGYAKVGDVDSARLFFDEAPEKDRGIWGAMISGYVQNSCF 218
Query: 64 REALTLFREMQTSNIRRDEFTTVRILT---------------------TFNNDIFVGIAL 102
+E L LFR +Q +++ DE V IL+ T + I + +L
Sbjct: 219 KEGLYLFRLLQLTHVVPDESIFVSILSACAHLGALDIGIWIHRYLNRKTVSLSIRLSTSL 278
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY KCG++E A+R+F M +D W AMI GLA+ G G +AL MFS+M + I+ D+
Sbjct: 279 LDMYAKCGNLELAKRLFDSMPERDIVCWNAMISGLAMHGDGASALKMFSEMEKTGIKPDD 338
Query: 163 VTYVGVLSACTHN 175
+T++ V +AC+++
Sbjct: 339 ITFIAVFTACSYS 351
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 72/198 (36%), Gaps = 52/198 (26%)
Query: 29 RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRI 88
+G + A + F ++ + +I +L F +F +M + + D +T +
Sbjct: 52 QGSLTYACRVFERIHHPTLCICNTIIKTFLVNGNFYGTFHVFTKMLHNGLGPDNYTIPYV 111
Query: 89 LTTFNN---------------------DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDK 127
L DIFVG +L+ MY CGDV A+ VF +M R
Sbjct: 112 LKACAALRDCSLGKMVHGYSSKLGLVFDIFVGNSLMAMYSVCGDVIAARHVFDEMPRLSA 171
Query: 128 FTWTAMIVGLAISGHGDTA-------------------------------LDMFSQMLRA 156
+W+ MI G A G D+A L +F +
Sbjct: 172 VSWSVMISGYAKVGDVDSARLFFDEAPEKDRGIWGAMISGYVQNSCFKEGLYLFRLLQLT 231
Query: 157 SIRLDEVTYVGVLSACTH 174
+ DE +V +LSAC H
Sbjct: 232 HVVPDESIFVSILSACAH 249
>gi|255564351|ref|XP_002523172.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537579|gb|EEF39203.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 569
Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 109/197 (55%), Gaps = 22/197 (11%)
Query: 1 MGFALEIFGNM-KNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR 59
M A +F M KD +S +++GY+ +G +D+A F Q+ ++D VLW M+ GY++
Sbjct: 240 MDAASRVFDEMGSKKDAVSHAILINGYVEKGLIDLASDIFYQIFDKDLVLWNVMLHGYIK 299
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFV 98
R +AL LF++M + DE T V IL DIFV
Sbjct: 300 AKRPIDALELFKKMDNEGLIPDENTMVGILAACASLSDLQYGRVVHMFINRNDIKQDIFV 359
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
ALIDMY KCG E+A F+KM KD FTWTA+I GLA +G+G+ AL++F QM I
Sbjct: 360 KTALIDMYFKCGSPEEALVTFYKMEYKDVFTWTAVIEGLANNGYGNVALNLFKQMEEQGI 419
Query: 159 RLDEVTYVGVLSACTHN 175
+ +E T+V L++C H+
Sbjct: 420 QPNEATFVSALTSCRHS 436
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 81/218 (37%), Gaps = 57/218 (26%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLW-TAMIDGYLRVNRFREALTLFR 71
+ D+ ++ Y + Q++ AR F +M ERD W T M Y N + + LF+
Sbjct: 116 DSDIYVQNALLHFYGSIKQLNYARLLFDKMYERDITSWNTFMGASYASSNSVIDLMDLFK 175
Query: 72 EMQTSNIRRDEFTTVRILTTFNND------------------------IFVGIALIDMYC 107
+ + + D+ T V + + F + V AL++MY
Sbjct: 176 RLISEGVGADKITLVILFSAFAQAQCDESLEYGTAVHSCAIKMGLVSMLNVSNALLNMYT 235
Query: 108 KCGDVEKAQRV--------------------------------FWKMLRKDKFTWTAMIV 135
K ++ A RV F+++ KD W M+
Sbjct: 236 KYRQMDAASRVFDEMGSKKDAVSHAILINGYVEKGLIDLASDIFYQIFDKDLVLWNVMLH 295
Query: 136 GLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
G + AL++F +M + DE T VG+L+AC
Sbjct: 296 GYIKAKRPIDALELFKKMDNEGLIPDENTMVGILAACA 333
>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
Length = 599
Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 108/192 (56%), Gaps = 36/192 (18%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F +M NK ++SWTT++ F +MP++D V W AMI GY+ NR
Sbjct: 234 ARKLFDSMTNKTMVSWTTML---------------FDEMPDKDVVPWNAMIGGYVHANRG 278
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
+EAL LF EMQ NI DE T V L+ + ++ +G AL
Sbjct: 279 KEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTAL 338
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG + KA +VF ++ ++ TWTA+I GLA+ G+ A+ FS+M+ S+ DE
Sbjct: 339 IDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDE 398
Query: 163 VTYVGVLSACTH 174
VT++G+LSAC H
Sbjct: 399 VTFLGLLSACCH 410
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 102/210 (48%), Gaps = 41/210 (19%)
Query: 6 EIFGNMK----NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVN 61
EI G++ + D+ ++ ++ G +D AR+ F + RD V W +MI+GY+R
Sbjct: 100 EILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRG 159
Query: 62 RFREALTLFREMQTSNIRRDEFTTVRILTTFNN--DIFVG-------------------I 100
EAL +REM+ I+ DE T + ++++ D+ +G
Sbjct: 160 WAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLAN 219
Query: 101 ALIDMYCKCGDVEKAQRVF----------W------KMLRKDKFTWTAMIVGLAISGHGD 144
AL+DMY KCG++E A+++F W +M KD W AMI G + G
Sbjct: 220 ALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGK 279
Query: 145 TALDMFSQMLRASIRLDEVTYVGVLSACTH 174
AL +F++M +I DEVT V LSAC+
Sbjct: 280 EALALFNEMQAMNINPDEVTMVSCLSACSQ 309
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 22/147 (14%)
Query: 50 WTAMIDGYLRVNRFREALTLF-REMQTSNIRRDEFTTVRILTT----------------- 91
W I G+L REA+ L+ R +Q + D +T +
Sbjct: 46 WNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHV 105
Query: 92 ----FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
F++DIFV A+I + CGD++ A+++F K +D +W +MI G G AL
Sbjct: 106 LHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEAL 165
Query: 148 DMFSQMLRASIRLDEVTYVGVLSACTH 174
+ + +M I+ DEVT +GV+S+C
Sbjct: 166 NFYREMKVEGIKPDEVTMIGVVSSCAQ 192
>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 698
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 75/176 (42%), Positives = 101/176 (57%), Gaps = 21/176 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T++V Y GQVD AR+ F QM RD V W+AMI GY + +R REAL LF EMQ +NI
Sbjct: 264 TSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANID 323
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
+E T V IL++ + +G AL+D Y KCG VE + V
Sbjct: 324 PNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEV 383
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
F KM K+ +WT +I GLA +G G AL+ F ML ++ ++VT++GVLSAC+H
Sbjct: 384 FGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSH 439
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 62/173 (35%), Positives = 96/173 (55%), Gaps = 21/173 (12%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
T++ Y N G+V++AR+ F +M ER+ W +M GY + + E + LF EM +IR
Sbjct: 164 TLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRF 223
Query: 81 DEFTTVRILTTFNN--DIFVG-------------------IALIDMYCKCGDVEKAQRVF 119
DE T V +LT D+ +G +L+DMY KCG V+ A+R+F
Sbjct: 224 DEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLF 283
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+M R+D W+AMI G + + ALD+F +M +A+I +E+T V +LS+C
Sbjct: 284 DQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSC 336
Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 57/162 (35%), Positives = 80/162 (49%), Gaps = 21/162 (12%)
Query: 32 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT 91
+D A F Q+ E D + MI G+ EA+ LF+EM ++++ DEFT IL
Sbjct: 74 MDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKV 133
Query: 92 ---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTW 130
F + FV LI MY CG+VE A+RVF +M ++ TW
Sbjct: 134 CSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTW 193
Query: 131 TAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+M G SG+ + + +F +ML IR DEVT V VL+AC
Sbjct: 194 NSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTAC 235
Score = 41.6 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERD 46
++E+FG M K+V+SWT ++ G + GQ A +YF M E++
Sbjct: 380 SIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKN 422
>gi|147799543|emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
Length = 613
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 69/181 (38%), Positives = 102/181 (56%), Gaps = 21/181 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV+ W ++ GY+ G++++AR F +MP+R V W MI GY + F+EA+ +FREMQ
Sbjct: 169 DVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQ 228
Query: 75 TSNIRRDEFTTVRILTTF------------------NN---DIFVGIALIDMYCKCGDVE 113
+ + + T V +L NN D +G ALIDMY KCG +E
Sbjct: 229 MAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIE 288
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
KA +VF + +++ TW+ +I GLA+ G LD F M RA + +VTY+G+LSAC+
Sbjct: 289 KALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACS 348
Query: 174 H 174
H
Sbjct: 349 H 349
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 93 NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
+ D+ + +ID Y + G++E A+ +F +M ++ +W MI G A SGH A+++F +
Sbjct: 167 DGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFRE 226
Query: 153 MLRASIRLDEVTYVGVLSA 171
M A + + VT V VL A
Sbjct: 227 MQMAEVPPNYVTLVSVLPA 245
>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 111/197 (56%), Gaps = 23/197 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A ++F M +DV+SWT ++ Y G ++ A F +P +D V WTAM+ GY +
Sbjct: 194 LGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQN 253
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTF-----------------------NNDIF 97
R +EAL F++MQ + DE T +++ + ++
Sbjct: 254 GRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVV 313
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
VG ALIDMY KCG ++A +VF M ++ F++++MI+G A+ G +AL +F ML+
Sbjct: 314 VGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTE 373
Query: 158 IRLDEVTYVGVLSACTH 174
IR ++VT++G+LSAC+H
Sbjct: 374 IRPNKVTFIGILSACSH 390
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 73/189 (38%), Gaps = 53/189 (28%)
Query: 39 FAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFT-------------- 84
F Q+ + LWTAMI GY E+ + M+ + FT
Sbjct: 99 FGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNM 158
Query: 85 --------TVRILTTFNNDIFVGIALIDMYCKC--------------------------- 109
++ F +D++VG ++ID+Y KC
Sbjct: 159 DLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVA 218
Query: 110 ----GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
GD+E A +F + KD WTAM+ G A +G AL+ F +M + DEVT
Sbjct: 219 YAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTL 278
Query: 166 VGVLSACTH 174
GV+SAC
Sbjct: 279 AGVISACAQ 287
>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 110/193 (56%), Gaps = 21/193 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F +M++K+V SW +VSG G ++ AR+ F +M E++ + W+AMIDGY++ +
Sbjct: 215 AKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYY 274
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
+EAL +F MQ IR +F +L N D +G AL
Sbjct: 275 KEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTAL 334
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY KCG ++ A VF KM +K+ FTW AMI GL + G + A+++F +M + R +
Sbjct: 335 VDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNG 394
Query: 163 VTYVGVLSACTHN 175
+T +GVLSAC H+
Sbjct: 395 ITLLGVLSACAHS 407
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 18/149 (12%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT 85
Y + G+V+ AR+ + D + + AMIDGYL+ A LF M+ N+
Sbjct: 175 YGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNV------- 227
Query: 86 VRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDT 145
++N ++ KCG +E+A+ +F +M K++ +W+AMI G G+
Sbjct: 228 ----GSWN-------VMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKE 276
Query: 146 ALDMFSQMLRASIRLDEVTYVGVLSACTH 174
AL++F+ M R IR + VL+AC +
Sbjct: 277 ALEVFNVMQREEIRPRKFVLSSVLAACAN 305
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 72/187 (38%), Gaps = 54/187 (28%)
Query: 21 TIVSGYINR--GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 78
T+V Y N ++ A + F +P + ++ +I G L+ N +A+ + +M ++
Sbjct: 67 TLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHA 126
Query: 79 RRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCK--------- 108
R ++FT + + D+ + A I MY
Sbjct: 127 RPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARR 186
Query: 109 ----------------------CGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTA 146
CG+VE A+ +FW M K+ +W M+ G+A G + A
Sbjct: 187 MLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEA 246
Query: 147 LDMFSQM 153
++F++M
Sbjct: 247 RELFNEM 253
>gi|347954490|gb|AEP33745.1| chloroplast biogenesis 19, partial [Arabis hirsuta]
Length = 435
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 106/189 (56%), Gaps = 21/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M+ K+ ++W T++ GY+ GQVD A + F +MPERD + WTAMI+G+++ EA
Sbjct: 74 VFDYMEEKNSVTWNTMIDGYMRNGQVDDAVKLFDEMPERDLISWTAMINGFVKKGFHEEA 133
Query: 67 LTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDM 105
L FREMQ S ++ D + L F N++ V +LID+
Sbjct: 134 LAWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVVSQDFKNNVRVSNSLIDL 193
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
YC+CG VE A++VF KM ++ +W ++IVG A +GH +L F +M + + VT+
Sbjct: 194 YCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGHAHESLVYFRKMQEEGFKPNAVTF 253
Query: 166 VGVLSACTH 174
G L+AC H
Sbjct: 254 TGALAACNH 262
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 17/127 (13%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDY----VLWTAMIDGYL 58
FA ++F M+ + V+SW +++ G+ G + YF +M E + V +T +
Sbjct: 202 FARQVFDKMEKRTVVSWNSVIVGFAANGHAHESLVYFRKMQEEGFKPNAVTFTGALAACN 261
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
V E L F+ M +RD + RI L+D+Y + G +E A +V
Sbjct: 262 HVGLVEEGLRYFQSM-----KRDYRISPRIEHYG--------CLVDLYSRAGRLEDALKV 308
Query: 119 FWKMLRK 125
M K
Sbjct: 309 VQSMPMK 315
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 31/110 (28%)
Query: 96 IFVGIALIDMYCKCGDVEKAQRVF----------W---------------------KMLR 124
+ VG A++ MY K G KA+ VF W +M
Sbjct: 52 VMVGTAILGMYSKRGRFRKARLVFDYMEEKNSVTWNTMIDGYMRNGQVDDAVKLFDEMPE 111
Query: 125 KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+D +WTAMI G G + AL F +M + ++ D V + L+ACT+
Sbjct: 112 RDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALAACTN 161
>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
Length = 508
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 103/187 (55%), Gaps = 22/187 (11%)
Query: 10 NMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 69
+M DV W +++GY G + AR F +MP+R+ + WTA+I GY + NR +A+ L
Sbjct: 142 SMSTGDVALWNAMLNGYAKHGDLCNARDLFERMPQRNVISWTALITGYAQANRPHDAIAL 201
Query: 70 FREMQTSNIRRDEFTTVRILTT----------------------FNNDIFVGIALIDMYC 107
FR MQ N+ DE + LT +I + ALIDMY
Sbjct: 202 FRRMQLENVEPDEIAMLVALTACARLGALELGEWIRHYIDRLGLLTTNIPLNNALIDMYA 261
Query: 108 KCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVG 167
K GD++ A +VF M K TWT MI GLA+ G G AL+MFS+M RA ++ +++T++
Sbjct: 262 KSGDIKSALQVFENMNHKTIITWTTMIAGLALHGLGTEALEMFSRMERARVKPNDITFIA 321
Query: 168 VLSACTH 174
+LSAC+H
Sbjct: 322 ILSACSH 328
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 69/167 (41%), Gaps = 56/167 (33%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
AL++F NM +K +I+WTT+++G G L T
Sbjct: 269 ALQVFENMNHKTIITWTTMIAGLALHG------------------LGT------------ 298
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFV--------------GI--------A 101
EAL +F M+ + ++ ++ T + IL+ ++ V GI
Sbjct: 299 -EALEMFSRMERARVKPNDITFIAILSACSHVGLVQTGRWYFNRMISRYGIEPKIEHYGC 357
Query: 102 LIDMYCKCGDVEKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTAL 147
+ID+ + G +++AQ + +M + W +++ A + HGD L
Sbjct: 358 MIDLLGRAGHLKEAQTLLAQMPFEPNAVIWGSLLA--ACNTHGDPEL 402
>gi|356499342|ref|XP_003518500.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g29230-like [Glycine max]
Length = 446
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 107/193 (55%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F M + DV+SW T++SGY N G+V++ + F +MP R+ W +I GY+R F
Sbjct: 75 ARELFDRMPDCDVMSWNTVLSGYANNGEVELFVKVFEEMPARNVYSWNGLIGGYVRNGLF 134
Query: 64 REALTLFREMQTSNIR-RDEFTTVRILTT---------------------FNNDIFVGIA 101
+EAL F+ M + +++T V +L+ + ++FVG A
Sbjct: 135 KEALECFKRMLVDGVVVPNDYTVVAVLSACSRLGDLEIGKWVHVYADSIGYKGNLFVGNA 194
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMY KCG +EKA VF + KD TW +I LA+ H AL +F M RA R D
Sbjct: 195 LIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINSLAMHXHAADALSLFEGMKRAGERPD 254
Query: 162 EVTYVGVLSACTH 174
VT+VG+LSACTH
Sbjct: 255 GVTFVGILSACTH 267
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 87/171 (50%), Gaps = 19/171 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M++K+V +WT +V+ ++ + AR+ F P+ D VLW ++ GY+ +
Sbjct: 13 AYKVFAEMRDKNVFAWTAVVAAHVACHDMVSARRLFDLAPQCDVVLWNVIVSGYIELGDM 72
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
A LF M ++ + TV L+ + N+ G+VE +VF +M
Sbjct: 73 VAARELFDRMPDCDVM--SWNTV--LSGYANN--------------GEVELFVKVFEEMP 114
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL-DEVTYVGVLSACT 173
++ ++W +I G +G AL+ F +ML + + ++ T V VLSAC+
Sbjct: 115 ARNVYSWNGLIGGYVRNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACS 165
>gi|145335149|ref|NP_172066.3| protein pigment defective 247 [Arabidopsis thaliana]
gi|75191933|sp|Q9MA50.1|PPR13_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05750, chloroplastic; AltName: Full=Protein PIGMENT
DEFECTIVE 247; Flags: Precursor
gi|6850304|gb|AAF29381.1|AC009999_1 Contains similarity to a hypothetical protein from Arabidopsis
thaliana gb|AC007109.6, and contains two DUF17 PF|01535
domains [Arabidopsis thaliana]
gi|62320576|dbj|BAD95203.1| hypothetical protein [Arabidopsis thaliana]
gi|332189766|gb|AEE27887.1| protein pigment defective 247 [Arabidopsis thaliana]
Length = 500
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 108/189 (57%), Gaps = 21/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M++K+ ++W T++ GY+ GQVD A + F +MPERD + WTAMI+G+++ EA
Sbjct: 131 VFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEA 190
Query: 67 LTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDM 105
L FREMQ S ++ D + L F N++ V +LID+
Sbjct: 191 LLWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDL 250
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
YC+CG VE A++VF+ M ++ +W ++IVG A +G+ +L F +M + D VT+
Sbjct: 251 YCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTF 310
Query: 166 VGVLSACTH 174
G L+AC+H
Sbjct: 311 TGALTACSH 319
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 74/202 (36%), Gaps = 55/202 (27%)
Query: 28 NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVR 87
++ + Q Q V WT+ I+ R R EA F +M + + + T +
Sbjct: 17 HKNHANPKIQRHNQSTSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIA 76
Query: 88 ILTTFN------------------------NDIFVGIALIDMYCK--------------- 108
+L+ N + VG A+I MY K
Sbjct: 77 LLSGCGDFTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYME 136
Query: 109 ----------------CGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
G V+ A ++F KM +D +WTAMI G G+ + AL F +
Sbjct: 137 DKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFRE 196
Query: 153 MLRASIRLDEVTYVGVLSACTH 174
M + ++ D V + L+ACT+
Sbjct: 197 MQISGVKPDYVAIIAALNACTN 218
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 18/147 (12%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYL 58
FA ++F NM+ + V+SW +++ G+ G + YF +M E+ D V +T +
Sbjct: 259 FARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACS 318
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
V E L F+ M+ D + RI L+D+Y + G +E A ++
Sbjct: 319 HVGLVEEGLRYFQIMKC-----DYRISPRIEHYG--------CLVDLYSRAGRLEDALKL 365
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDT 145
M K ++ A S HG+
Sbjct: 366 VQSMPMKPNEVVIGSLLA-ACSNHGNN 391
>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Vitis vinifera]
Length = 631
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 102/181 (56%), Gaps = 21/181 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV+ W ++ GY+ G++++AR F +MP+R V W MI GY + F+EA+ +FREMQ
Sbjct: 192 DVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQ 251
Query: 75 TSNIRRDEFTTVRILTTF------------------NN---DIFVGIALIDMYCKCGDVE 113
+ + + T V +L NN D +G ALIDMY KCG +E
Sbjct: 252 MAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIE 311
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
KA +VF + +++ TW+ +I GLA+ G LD F M RA + +VTY+G+LSAC+
Sbjct: 312 KALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACS 371
Query: 174 H 174
H
Sbjct: 372 H 372
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 93 NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
+ D+ + +ID Y + G++E A+ +F +M ++ +W MI G A SGH A+++F +
Sbjct: 190 DGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFRE 249
Query: 153 MLRASIRLDEVTYVGVLSA 171
M A + + VT V VL A
Sbjct: 250 MQMAEVPPNYVTLVSVLPA 268
>gi|356560406|ref|XP_003548483.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26630,
chloroplastic-like [Glycine max]
Length = 483
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 110/191 (57%), Gaps = 22/191 (11%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE 65
++F M+ ++V +WTT++SG + G++D AR+ F QMP ++ V WTAMIDGY++ + E
Sbjct: 179 KVFDKMRVRNVFAWTTVISGLVACGKLDTARELFEQMPSKNVVSWTAMIDGYVKHKQPIE 238
Query: 66 ALTLFREMQ-TSNIRRDEFTTVRIL---------------------TTFNNDIFVGIALI 103
A LF MQ N+R +E+T V ++ F + F+G ALI
Sbjct: 239 AFNLFERMQQVDNVRPNEYTLVSLVRACTEMGSLKLGRRVHDFALKNGFELEPFLGTALI 298
Query: 104 DMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEV 163
DMY KCG ++ A+ VF M + TW MI L + G+ D AL +F +M +A+ D +
Sbjct: 299 DMYSKCGYLDDARTVFDMMQVRTLATWNTMITSLGVHGYRDEALSLFDEMEKANEVPDAI 358
Query: 164 TYVGVLSACTH 174
T+VGVLSAC +
Sbjct: 359 TFVGVLSACVY 369
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 21/150 (14%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFT----- 84
G++ A F Q+ D W MI + + AL LF+ M D+FT
Sbjct: 71 GKMKYATLVFDQLNAPDVFTWNVMIRAFTIGGSPKMALLLFKAMLCQGFAPDKFTYPFVI 130
Query: 85 ----------------TVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
+ I F D++V ++++Y KC +V+ ++VF KM ++ F
Sbjct: 131 NACMASSALDLGIVAHALAIKMGFWGDLYVQNTMMNLYFKCENVDDGRKVFDKMRVRNVF 190
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASI 158
WT +I GL G DTA ++F QM ++
Sbjct: 191 AWTTVISGLVACGKLDTARELFEQMPSKNV 220
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 7/121 (5%)
Query: 57 YLRVNRFR----EALTLFREMQT-SNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGD 111
YL R R EAL L ++ +++ +R T+ D + LI + G
Sbjct: 15 YLGTPRTRFGSEEALVLLQKCSNFKQLKQVHGKIIRFGLTY--DQLLMRKLIQLSSSYGK 72
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
++ A VF ++ D FTW MI I G AL +F ML D+ TY V++A
Sbjct: 73 MKYATLVFDQLNAPDVFTWNVMIRAFTIGGSPKMALLLFKAMLCQGFAPDKFTYPFVINA 132
Query: 172 C 172
C
Sbjct: 133 C 133
>gi|347954496|gb|AEP33748.1| chloroplast biogenesis 19, partial [Capsella bursa-pastoris]
Length = 489
Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 107/189 (56%), Gaps = 21/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M++K+ ++W T++ GY+ GQVD A + F +MPERD + WTAMI+G+++ EA
Sbjct: 120 VFDYMEDKNSVTWNTMIDGYMRNGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEA 179
Query: 67 LTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDM 105
L FREMQ S ++ D + L F N++ V +LID+
Sbjct: 180 LAWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVKVSNSLIDL 239
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
YC+CG VE A+ VF KM ++ +W ++IVG A +G+ +L F +M + D VT+
Sbjct: 240 YCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTF 299
Query: 166 VGVLSACTH 174
G L+AC+H
Sbjct: 300 TGALTACSH 308
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 74/206 (35%), Gaps = 55/206 (26%)
Query: 23 VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDE 82
VS + D Q Q V WT+ I R R EA F +M+ + + +
Sbjct: 1 VSFITRKHHADPKIQKLNQSTSETIVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNH 60
Query: 83 FTTVRILTTFNN------------------------DIFVGIALIDMYCKCGDVEKAQRV 118
T + +L+ + + VG A++ MY K V+KA+ V
Sbjct: 61 ITFIALLSGCGDFSSGSEALGDLLHGYACKLGHDRTHVMVGTAILGMYSKHSRVKKARLV 120
Query: 119 F----------W---------------------KMLRKDKFTWTAMIVGLAISGHGDTAL 147
F W KM +D +WTAMI G G + AL
Sbjct: 121 FDYMEDKNSVTWNTMIDGYMRNGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEAL 180
Query: 148 DMFSQMLRASIRLDEVTYVGVLSACT 173
F +M + ++ D V + L+ACT
Sbjct: 181 AWFREMQISGVKPDYVAIIAALNACT 206
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 17/127 (13%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYL 58
FA E+F M+ + V+SW +++ G+ G + YF +M E D V +T +
Sbjct: 248 FAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACS 307
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
V E L F+ M +RD + RI L+D+Y + G +E+A +V
Sbjct: 308 HVGLVEEGLRYFQTM-----KRDHRISPRIEHYG--------CLVDLYSRAGRLEEALKV 354
Query: 119 FWKMLRK 125
M K
Sbjct: 355 VQSMPMK 361
>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
Length = 719
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 71/196 (36%), Positives = 110/196 (56%), Gaps = 21/196 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A+++F M K+ +SW+T++ G+ G +D A + F QMPE++ V WT M+DG+ R
Sbjct: 266 MKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRN 325
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTF-----------------NNDIFV----G 99
+AL++F +M +R + FT V L+ +N + + G
Sbjct: 326 GDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALG 385
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+DMY KCG++E A VF + +K TWT MI G AI GH + A+ F QM+ A I+
Sbjct: 386 TALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIK 445
Query: 160 LDEVTYVGVLSACTHN 175
DEV ++ +L+AC H+
Sbjct: 446 PDEVVFLALLTACMHS 461
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 56/254 (22%), Positives = 92/254 (36%), Gaps = 89/254 (35%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
I N+ + +I+ T ++S R ++ + F ++ + A+I G + F A
Sbjct: 105 IIHNLSSSSLIT-TQLISSSSLRKSINHSLAVFNHHKPKNLFTFNALIRGLTTNSHFFNA 163
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDM 105
+ FR M S I+ D T +L + D FV ++L+DM
Sbjct: 164 IFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTELGMAIHCMILRCGIELDSFVRVSLVDM 223
Query: 106 Y------------------------------------CKCGDVEKAQRVFWKMLRKDKFT 129
Y CK G ++KA ++F M +K+ +
Sbjct: 224 YVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMPKKENVS 283
Query: 130 WTAMIVGLAISG-----------------------------HGDT--ALDMFSQMLRASI 158
W+ +I G A +G +GD+ AL MFS+ML +
Sbjct: 284 WSTLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGV 343
Query: 159 RLDEVTYVGVLSAC 172
R + T V LSAC
Sbjct: 344 RPNAFTIVSALSAC 357
Score = 42.7 bits (99), Expect = 0.049, Method: Composition-based stats.
Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 25/155 (16%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T +V Y G ++ A + F + ++ WT MI G+ +A+ F++M + I+
Sbjct: 386 TALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIK 445
Query: 80 RDEFTTVRILTTFNNDIFVGIAL----------------------IDMYCKCGDVEKAQR 117
DE + +LT + V I L +DM + G +++A R
Sbjct: 446 PDEVVFLALLTACMHSGQVDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALR 505
Query: 118 VFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFS 151
+M + D W A+ A H T + F+
Sbjct: 506 FIERMPMNPDFVIWGALFC--ACRAHKKTKMAKFA 538
>gi|125562063|gb|EAZ07511.1| hypothetical protein OsI_29767 [Oryza sativa Indica Group]
Length = 567
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 71/196 (36%), Positives = 111/196 (56%), Gaps = 24/196 (12%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A ++F M ++++SW ++ GY +D AR+ F MPE+D V WT MI GY + R
Sbjct: 244 LARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGR 303
Query: 63 FREALTLFREMQT-SNIRRDEFTTVRILTT-----------------------FNNDIFV 98
+++ L LFR MQT SN++ +E T V +L+ NN+ +
Sbjct: 304 YQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNL 363
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
G ALIDMY KCG + A ++F + RK+ W A+I LA++G+ ++D F QM R
Sbjct: 364 GAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNAQDSVDAFEQMKRTGE 423
Query: 159 RLDEVTYVGVLSACTH 174
+ +++T+VGVL+AC+H
Sbjct: 424 KPNDITFVGVLTACSH 439
Score = 93.2 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 58/177 (32%), Positives = 92/177 (51%), Gaps = 21/177 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYL 58
M A +F M ++ +SW+T+V GY G++D+AR+ F +MP R+ V W +M+ G+
Sbjct: 178 MESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIGRNVVTWNSMVTGFA 237
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
R A +F EM VR L ++N A++ Y D++ A+ +
Sbjct: 238 RHGLLPLARKMFDEM-----------PVRNLVSWN-------AMLRGYSVNSDMDGAREL 279
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM-LRASIRLDEVTYVGVLSACTH 174
F M KD +WT MI G A +G L++F M ++++ +EVT V VLSAC +
Sbjct: 280 FDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACAN 336
>gi|227462996|gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227462998|gb|ACP39951.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 532
Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 108/191 (56%), Gaps = 21/191 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F +DVI+WT +++GY+ G V+ AR+ F QMPER+ V W+AMI GY+ + F
Sbjct: 162 ARKLFDVSTCRDVITWTALINGYVKSGHVEFARELFDQMPERNEVSWSAMITGYVHMGMF 221
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
REAL LF ++Q + +R + V LT + D +G AL
Sbjct: 222 REALELFNDLQLTGLRPNHAGIVGALTACSYLGSLDHGRWIHAYVDRNGTELDRVLGTAL 281
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY KCG +E A VF KM KD F +T++I GLA G A+ +F +M + +E
Sbjct: 282 VDMYAKCGCIEIACSVFEKMPDKDAFAFTSLISGLANHGQSADAIQLFGRMQSEKVIPNE 341
Query: 163 VTYVGVLSACT 173
VT++ VLSAC+
Sbjct: 342 VTFICVLSACS 352
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 25/181 (13%)
Query: 15 DVISWTTIVSGYINRGQVDIARQY--FAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
D + I+S + DI+ Y F +P R +W +I ++ N AL+L++
Sbjct: 41 DPFAAGKIISLFAVSSNADISHAYKLFLSLPHRTTFIWNTIIRIFVEKNENATALSLYKN 100
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIA-------------------LIDMYCKCGDVE 113
M + + +T +L ++ VG+A LI +Y VE
Sbjct: 101 MLQTGFLPNNYTFSFVLRACTDNSPVGLASHAQVIKLGWESYDFVLNGLIHLYANWSSVE 160
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
A+++F +D TWTA+I G SGH + A ++F QM +EV++ +++
Sbjct: 161 AARKLFDVSTCRDVITWTALINGYVKSGHVEFARELFDQMPER----NEVSWSAMITGYV 216
Query: 174 H 174
H
Sbjct: 217 H 217
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 5/119 (4%)
Query: 60 VNRFREALTLFREMQT-SNIRRDEFTTVRILTTFNNDIFVGIALIDMYC--KCGDVEKAQ 116
V + L+L + +T S I+ + + I++ D F +I ++ D+ A
Sbjct: 7 VKASQRCLSLLEQCRTMSQIK--QMHSHLIVSASRLDPFAAGKIISLFAVSSNADISHAY 64
Query: 117 RVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
++F + + F W +I TAL ++ ML+ + T+ VL ACT N
Sbjct: 65 KLFLSLPHRTTFIWNTIIRIFVEKNENATALSLYKNMLQTGFLPNNYTFSFVLRACTDN 123
>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats.
Identities = 69/189 (36%), Positives = 103/189 (54%), Gaps = 21/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F + +D +SW +++ GY G++++A + F MPER+ + WT+MI G + + +EA
Sbjct: 175 LFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEA 234
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDM 105
L LF MQT+ I+ D V L + D +G LIDM
Sbjct: 235 LNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDM 294
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y KCGD+E+A VF KM K WTAMI G AI G G AL+ F +M A + +++T+
Sbjct: 295 YAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTF 354
Query: 166 VGVLSACTH 174
G+L+AC+H
Sbjct: 355 TGILTACSH 363
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 45/194 (23%), Positives = 81/194 (41%), Gaps = 23/194 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQM-----PERDYVLWTAMID 55
+ +A +F + + W T++ GY N + + A + M P Y + ++
Sbjct: 68 LAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYT-FPFLLK 126
Query: 56 GYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN-----------------DIFV 98
++ E + + + +TT +L ++ D
Sbjct: 127 ACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVS 186
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
++ID Y KCG++E A +F M ++ +WT+MI G +G AL++F +M A I
Sbjct: 187 WNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGI 246
Query: 159 RLDEVTYVGVLSAC 172
+LD V V L AC
Sbjct: 247 KLDNVALVSTLQAC 260
Score = 39.7 bits (91), Expect = 0.49, Method: Composition-based stats.
Identities = 36/163 (22%), Positives = 73/163 (44%), Gaps = 22/163 (13%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP----ERDYVLWTAMIDGYLR 59
A+E+F M+ K V WT ++SGY G+ A ++F +M E + + +T ++
Sbjct: 304 AIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSH 363
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119
EA LF M+ + F I ++D+ + G +++A+ +
Sbjct: 364 AGLVHEAKLLFESMER-------------IHGFKPSIEHYGCMVDLLGRAGLLKEAEELI 410
Query: 120 WKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
M ++ + W A++ I G+ L++ Q+ + I++D
Sbjct: 411 ENMPVKPNAAIWGALLNACHIHGN----LELGKQIGKILIQVD 449
>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats.
Identities = 69/189 (36%), Positives = 103/189 (54%), Gaps = 21/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F + +D +SW +++ GY G++++A + F MPER+ + WT+MI G + + +EA
Sbjct: 175 LFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEA 234
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDM 105
L LF MQT+ I+ D V L + D +G LIDM
Sbjct: 235 LNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDM 294
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y KCGD+E+A VF KM K WTAMI G AI G G AL+ F +M A + +++T+
Sbjct: 295 YAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTF 354
Query: 166 VGVLSACTH 174
G+L+AC+H
Sbjct: 355 TGILTACSH 363
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/197 (23%), Positives = 77/197 (39%), Gaps = 52/197 (26%)
Query: 28 NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVR 87
N G + AR F ++ + +W MI GY EAL L+ M ++ + +T
Sbjct: 64 NSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPF 123
Query: 88 ILTT---------------------FNNDIFVGIALIDMYC------------------- 107
+L F ++I+ +L+++Y
Sbjct: 124 LLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRD 183
Query: 108 ------------KCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155
KCG++E A +F M ++ +WT+MI G +G AL++F +M
Sbjct: 184 TVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQT 243
Query: 156 ASIRLDEVTYVGVLSAC 172
A I+LD V V L AC
Sbjct: 244 AGIKLDNVALVSTLQAC 260
Score = 39.7 bits (91), Expect = 0.49, Method: Composition-based stats.
Identities = 36/163 (22%), Positives = 73/163 (44%), Gaps = 22/163 (13%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP----ERDYVLWTAMIDGYLR 59
A+E+F M+ K V WT ++SGY G+ A ++F +M E + + +T ++
Sbjct: 304 AIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSH 363
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119
EA LF M+ + F I ++D+ + G +++A+ +
Sbjct: 364 AGLVHEAKLLFESMER-------------IHGFKPSIEHYGCMVDLLGRAGLLKEAEELI 410
Query: 120 WKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
M ++ + W A++ I G+ L++ Q+ + I++D
Sbjct: 411 ENMPVKPNAAIWGALLNACHIHGN----LELGKQIGKILIQVD 449
>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 111/197 (56%), Gaps = 23/197 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A ++F M +DV+SWT ++ Y G ++ A F +P +D V WTAM+ GY +
Sbjct: 194 LGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQN 253
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTF-----------------------NNDIF 97
R +EAL F++MQ + DE T +++ + ++
Sbjct: 254 GRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVV 313
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
VG ALIDMY KCG ++A +VF M ++ F++++MI+G A+ G +AL +F ML+
Sbjct: 314 VGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTE 373
Query: 158 IRLDEVTYVGVLSACTH 174
IR ++VT++G+LSAC+H
Sbjct: 374 IRPNKVTFIGILSACSH 390
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 73/189 (38%), Gaps = 53/189 (28%)
Query: 39 FAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFT-------------- 84
F Q+ + LWTAMI GY E+ + M+ + FT
Sbjct: 99 FGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNM 158
Query: 85 --------TVRILTTFNNDIFVGIALIDMYCKC--------------------------- 109
++ F +D++VG ++ID+Y KC
Sbjct: 159 DLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVA 218
Query: 110 ----GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
GD+E A +F + KD WTAM+ G A +G AL+ F +M + DEVT
Sbjct: 219 YAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTL 278
Query: 166 VGVLSACTH 174
GV+SAC
Sbjct: 279 AGVISACAQ 287
>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 516
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 105/189 (55%), Gaps = 21/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F + +D++SW ++ GYI G +D+A + F MPE++ + WT MI G++R+ +EA
Sbjct: 167 LFNQLPTRDIVSWNIMIDGYIKFGNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEA 226
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDM 105
L+L ++M + I+ D T L+ D +G L DM
Sbjct: 227 LSLLQQMLVAGIKPDSITLSCSLSACAGLGALEQGKWIHTYIEKNEIKIDPVLGCVLTDM 286
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y KCG++EKA VF K+ +K WTA+I GLAI G G ALD F+QM +A I + +T+
Sbjct: 287 YVKCGEMEKALLVFSKLEKKCVCAWTAIIGGLAIHGKGREALDWFTQMQKAGINPNSITF 346
Query: 166 VGVLSACTH 174
+L+AC+H
Sbjct: 347 TAILTACSH 355
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 78/189 (41%), Gaps = 23/189 (12%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQM-----PERDYVLWTAMIDGYLRVN 61
+F ++ + + + W T++ Y N + A + QM P Y + ++ ++
Sbjct: 66 VFDSISSPNTVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYT-FPFLLKACSALS 124
Query: 62 RFREALTLFREMQTSNIRRDEFTTVRIL-------------TTFNN----DIFVGIALID 104
F E + + + + T +L FN DI +ID
Sbjct: 125 AFEETQQIHAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMID 184
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVT 164
Y K G+++ A ++F M K+ +WT MIVG G AL + QML A I+ D +T
Sbjct: 185 GYIKFGNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSIT 244
Query: 165 YVGVLSACT 173
LSAC
Sbjct: 245 LSCSLSACA 253
>gi|15231592|ref|NP_189297.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75275188|sp|Q38959.1|PP257_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g26630, chloroplastic; Flags: Precursor
gi|1402883|emb|CAA66814.1| hypothetical protein [Arabidopsis thaliana]
gi|1495263|emb|CAA66119.1| orf09 [Arabidopsis thaliana]
gi|11994298|dbj|BAB01728.1| unnamed protein product [Arabidopsis thaliana]
gi|20466384|gb|AAM20509.1| unknown protein [Arabidopsis thaliana]
gi|23198064|gb|AAN15559.1| unknown protein [Arabidopsis thaliana]
gi|332643668|gb|AEE77189.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 455
Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 105/191 (54%), Gaps = 22/191 (11%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE 65
++F M + ++SWTT++ G ++ Q+D A F QMP R+ V WTAMI Y++ R E
Sbjct: 175 KVFDKMPGRSIVSWTTMLYGLVSNSQLDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDE 234
Query: 66 ALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALID 104
A LFR MQ +++ +EFT V +L F D F+G ALID
Sbjct: 235 AFQLFRRMQVDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNGFVLDCFLGTALID 294
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMF-SQMLRASIRLDEV 163
MY KCG ++ A++VF M K TW +MI L + G G+ AL +F AS+ D +
Sbjct: 295 MYSKCGSLQDARKVFDVMQGKSLATWNSMITSLGVHGCGEEALSLFEEMEEEASVEPDAI 354
Query: 164 TYVGVLSACTH 174
T+VGVLSAC +
Sbjct: 355 TFVGVLSACAN 365
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 22/146 (15%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR-DEFT---- 84
G+ A F Q+ W MI ++ REAL LF M S+ + D+FT
Sbjct: 66 GETQYASLVFNQLQSPSTFTWNLMIRSLSVNHKPREALLLFILMMISHQSQFDKFTFPFV 125
Query: 85 --------TVRILTT---------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDK 127
++R+ T F ND+F L+D+Y KCG + ++VF KM +
Sbjct: 126 IKACLASSSIRLGTQVHGLAIKAGFFNDVFFQNTLMDLYFKCGKPDSGRKVFDKMPGRSI 185
Query: 128 FTWTAMIVGLAISGHGDTALDMFSQM 153
+WT M+ GL + D+A +F+QM
Sbjct: 186 VSWTTMLYGLVSNSQLDSAEIVFNQM 211
>gi|125603908|gb|EAZ43233.1| hypothetical protein OsJ_27833 [Oryza sativa Japonica Group]
Length = 567
Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats.
Identities = 71/196 (36%), Positives = 111/196 (56%), Gaps = 24/196 (12%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A ++F M ++++SW ++ GY +D AR+ F MPE+D V WT MI GY + R
Sbjct: 244 LARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGR 303
Query: 63 FREALTLFREMQT-SNIRRDEFTTVRILTT-----------------------FNNDIFV 98
+++ L LFR MQT SN++ +E T V +L+ NN+ +
Sbjct: 304 YQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNL 363
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
G ALIDMY KCG + A ++F + RK+ W A+I LA++G+ ++D F QM R
Sbjct: 364 GAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGE 423
Query: 159 RLDEVTYVGVLSACTH 174
+ +++T+VGVL+AC+H
Sbjct: 424 KPNDITFVGVLTACSH 439
Score = 93.2 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 58/177 (32%), Positives = 92/177 (51%), Gaps = 21/177 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYL 58
M A +F M ++ +SW+T+V GY G++D+AR+ F +MP R+ V W +M+ G+
Sbjct: 178 MESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIGRNVVTWNSMVTGFA 237
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
R A +F EM VR L ++N A++ Y D++ A+ +
Sbjct: 238 RHGLLPLARKMFDEM-----------PVRNLVSWN-------AMLRGYSVNSDMDGAREL 279
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM-LRASIRLDEVTYVGVLSACTH 174
F M KD +WT MI G A +G L++F M ++++ +EVT V VLSAC +
Sbjct: 280 FDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACAN 336
>gi|347954492|gb|AEP33746.1| chloroplast biogenesis 19, partial [Barbarea verna]
Length = 494
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 109/194 (56%), Gaps = 21/194 (10%)
Query: 2 GFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVN 61
G A +F M++K+ ++W T++ GY+ GQV+ A + F +MPERD + WTAMI+G+++
Sbjct: 120 GKARLVFDFMEDKNSVTWNTMIDGYMRSGQVNNAVKLFDEMPERDLISWTAMINGFVKKG 179
Query: 62 RFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGI 100
EAL FREMQ S ++ D + L F N+I V
Sbjct: 180 FHEEALAWFREMQISGVKPDYVAIIAALAACTHLGALSFGLWVHRYVMNQDFKNNIRVSN 239
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
+LID+YC+CG VE A+ VF KM ++ +W ++IVG A +G+ +L F +M +
Sbjct: 240 SLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKP 299
Query: 161 DEVTYVGVLSACTH 174
D VT+ G L+AC+H
Sbjct: 300 DAVTFTGALTACSH 313
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 78/197 (39%), Gaps = 46/197 (23%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMP----ERDYVLWTAMIDGYLRVNRFREALT 68
++ +SWT+ ++ G++ A + F+ M E +++ + A++ G V+ EAL
Sbjct: 27 SETTVSWTSRITLLSRNGRLAEAAKEFSSMRLAGVEPNHITFIALLSGCGDVSSGSEALG 86
Query: 69 LFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCK-------------------- 108
+ D + VG A++ MY K
Sbjct: 87 DLLHGYACKLGLDR-----------THVMVGTAILGMYSKRGRFGKARLVFDFMEDKNSV 135
Query: 109 -----------CGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
G V A ++F +M +D +WTAMI G G + AL F +M +
Sbjct: 136 TWNTMIDGYMRSGQVNNAVKLFDEMPERDLISWTAMINGFVKKGFHEEALAWFREMQISG 195
Query: 158 IRLDEVTYVGVLSACTH 174
++ D V + L+ACTH
Sbjct: 196 VKPDYVAIIAALAACTH 212
>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 619
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 109/203 (53%), Gaps = 32/203 (15%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F M ++DV+SW T++SGY G+V+ + F +MP R+ W +I GY+R F
Sbjct: 238 ARELFDRMPDRDVMSWNTVLSGYATNGEVESFVKLFEEMPVRNVYSWNGLIGGYVRNGLF 297
Query: 64 REALTLFREM-----------QTSNIRRDEFTTVRILTT--------------------- 91
+EAL F+ M + +++T V +LT
Sbjct: 298 KEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMGKWVHVYAESIG 357
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
+ ++FVG ALIDMY KCG +EKA VF + KD TW +I GLA+ GH AL +F
Sbjct: 358 YKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINGLAMHGHVADALSLFE 417
Query: 152 QMLRASIRLDEVTYVGVLSACTH 174
+M RA R D VT+VG+LSACTH
Sbjct: 418 RMKRAGERPDGVTFVGILSACTH 440
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 83/181 (45%), Gaps = 29/181 (16%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M++K+V +WT IV+ ++ + AR+ F P+RD VLW ++ GY+ +
Sbjct: 176 AYKVFAEMRDKNVFAWTAIVAAHVACRDMVSARRLFDLAPQRDVVLWNVVVSGYIELGDM 235
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
A LF M + D+ ++ Y G+VE ++F +M
Sbjct: 236 VAARELFDRMP------------------DRDVMSWNTVLSGYATNGEVESFVKLFEEMP 277
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQML-----------RASIRLDEVTYVGVLSAC 172
++ ++W +I G +G AL+ F +ML + ++ T V VL+AC
Sbjct: 278 VRNVYSWNGLIGGYVRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTAC 337
Query: 173 T 173
+
Sbjct: 338 S 338
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 23/128 (17%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G + AR+ F + + + W AM GY + N + + LF M + + FT ++
Sbjct: 68 GGIRRARRVFDKTAQPNGATWNAMFRGYAQANCHLDVVVLFARMHRAGASPNCFTFPMVV 127
Query: 90 TT---------------------FNNDIFVGIALIDMYCKCGD--VEKAQRVFWKMLRKD 126
+ F ++ FVG ALI MY G V A +VF +M K+
Sbjct: 128 KSCATANAAKEGEEVHCVVAKRGFKSNTFVGCALIHMYSLRGGVFVADAYKVFAEMRDKN 187
Query: 127 KFTWTAMI 134
F WTA++
Sbjct: 188 VFAWTAIV 195
>gi|297843364|ref|XP_002889563.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
gi|297335405|gb|EFH65822.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
Length = 500
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 107/189 (56%), Gaps = 21/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M++K+ ++W T++ GY+ GQVD A + F +MPERD + WTAMI+G++ EA
Sbjct: 131 VFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVNKGFHEEA 190
Query: 67 LTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDM 105
L FREMQ S ++ D + L F N++ V +LID+
Sbjct: 191 LAWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVRVSNSLIDL 250
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
YC+CG VE A++VF KM ++ +W ++IVG A +G+ +L F +M + D VT+
Sbjct: 251 YCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEERFKPDAVTF 310
Query: 166 VGVLSACTH 174
G L+AC+H
Sbjct: 311 TGALTACSH 319
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 58/141 (41%), Gaps = 24/141 (17%)
Query: 37 QYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFN--- 93
Q Q + V WT+ I R R EA F +M+ + + + T + IL+
Sbjct: 26 QRLNQSTSENTVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIAILSGCGDFP 85
Query: 94 ---------------------NDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA 132
N + VG A+I MY K G V+KA+ VF M K+ TW
Sbjct: 86 SGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRVKKARCVFDYMEDKNSVTWNT 145
Query: 133 MIVGLAISGHGDTALDMFSQM 153
MI G SG D A MF +M
Sbjct: 146 MIDGYMRSGQVDNAAKMFDKM 166
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 18/149 (12%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYL 58
FA ++F M+ + V+SW +++ G+ G + YF +M E D V +T +
Sbjct: 259 FARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEERFKPDAVTFTGALTACS 318
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
V E L F+ M + D + RI L+D+Y + G +E A ++
Sbjct: 319 HVGLVEEGLRYFQIMIS-----DYRISPRIEHYG--------CLVDLYSRAGRLEDALKL 365
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
M K ++ A HG+ +
Sbjct: 366 VQSMPMKPNEVVIGSLLA-ACRNHGNNTV 393
>gi|297734524|emb|CBI15771.3| unnamed protein product [Vitis vinifera]
Length = 436
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 108/183 (59%), Gaps = 22/183 (12%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
+DV+SW +++SGY+ + ++A + F ++P R+ V WT+MI GY + + F+EA+ LFREM
Sbjct: 76 RDVVSWNSMISGYLQSHRYELALKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREM 135
Query: 74 QTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDV 112
Q D T +L+ + D+ ALI MY KCGD+
Sbjct: 136 QIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDI 195
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM-LRASIRLDEVTYVGVLSA 171
+KA +F + + D F+W+A+I GLA++G D AL +FSQM + + IR +E+T++GVL A
Sbjct: 196 QKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCA 255
Query: 172 CTH 174
C H
Sbjct: 256 CNH 258
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%)
Query: 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
+L D+ ++I Y + E A +VF ++ ++ WT+MI G A S A+
Sbjct: 70 MLPALVRDVVSWNSMISGYLQSHRYELALKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAI 129
Query: 148 DMFSQMLRASIRLDEVTYVGVLSACTH 174
++F +M D T VLSAC H
Sbjct: 130 ELFREMQIGGFAADAATIACVLSACGH 156
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQM 42
ALEIF + D+ SW+ ++SG G+ D A F+QM
Sbjct: 198 ALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQM 236
>gi|297824523|ref|XP_002880144.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325983|gb|EFH56403.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 555
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 111/196 (56%), Gaps = 23/196 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +F M +K VI+WTT++ GY N +D AR+ F MPER+ V W MI GY +
Sbjct: 192 MTSARRLFDEMTHKTVITWTTMIHGYCNSNDIDSARKLFDAMPERNLVSWNTMIGGYCQN 251
Query: 61 NRFREALTLFREMQ-TSNIRRDEFTTVRILTT---------------------FNNDIFV 98
+ +EA+ LF+EMQ T+++ D+ T + +L + + V
Sbjct: 252 KQPQEAIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKNLDKKVKV 311
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
A++DMY KCG++EKA+R+F +M K +W AMI G A++G+ ALD+F M +
Sbjct: 312 CTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNAHAALDLFLTMAKEE- 370
Query: 159 RLDEVTYVGVLSACTH 174
+ DE+T + V+SAC H
Sbjct: 371 KPDEITMLAVISACNH 386
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 87/173 (50%), Gaps = 20/173 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE-RDYVLWTAMIDGYLR 59
MG A +F M + +SWT ++ GY+ G++D+A + F QMP+ +D V++ AM+DG+++
Sbjct: 129 MGCARNVFDEMPQRSEVSWTALICGYVRFGELDLASKLFDQMPQVKDVVIYNAMMDGFVK 188
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119
A LF EM TV TT +I YC D++ A+++F
Sbjct: 189 SGDMTSARRLFDEMT--------HKTVITWTT----------MIHGYCNSNDIDSARKLF 230
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM-LRASIRLDEVTYVGVLSA 171
M ++ +W MI G + A+ +F +M S+ D+VT + VL A
Sbjct: 231 DAMPERNLVSWNTMIGGYCQNKQPQEAIRLFQEMQATTSLDPDDVTILSVLPA 283
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 67/139 (48%), Gaps = 17/139 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ T +V Y G++ AR F +MP+R V WTA+I GY+R A LF
Sbjct: 112 DMYVSTGVVDMYAKFGKMGCARNVFDEMPQRSEVSWTALICGYVRFGELDLASKLF---- 167
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
D+ V+ + +N A++D + K GD+ A+R+F +M K TWT MI
Sbjct: 168 ------DQMPQVKDVVIYN-------AMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMI 214
Query: 135 VGLAISGHGDTALDMFSQM 153
G S D+A +F M
Sbjct: 215 HGYCNSNDIDSARKLFDAM 233
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 31/161 (19%)
Query: 16 VISWTTIVSGYINRGQVDIARQYFAQMPER-DYVLWTAMIDGYLRVNRFREALTLFREMQ 74
VIS + + GY AR+ F Q P R D L +MI YL + ++ +R+++
Sbjct: 18 VISASAVGIGY--------ARKLFDQRPHREDSFLCNSMIKAYLETRHYNDSFAFYRDLR 69
Query: 75 TSN-IRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDV 112
+ D FT + + F D++V ++DMY K G +
Sbjct: 70 KETCLAPDNFTFTTMTKSCTLSMCVYQGLQLHSQIWRSGFCADMYVSTGVVDMYAKFGKM 129
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
A+ VF +M ++ + +WTA+I G G D A +F QM
Sbjct: 130 GCARNVFDEMPQRSEVSWTALICGYVRFGELDLASKLFDQM 170
>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
Length = 546
Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 111/197 (56%), Gaps = 23/197 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A +IF M KD++SW +++GY+ G+++ AR F + PE+D V W MI GY+
Sbjct: 195 LGVARQIFDEMPVKDLVSWNVMITGYVKNGEMENARTLFDEAPEKDVVTWNTMIAGYVLR 254
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN----------------------DIFV 98
R+AL +F EM+ DE T + +L+ + + +
Sbjct: 255 GEQRQALEMFEEMRNVGECPDEVTMLSLLSACADLGDLQVGRKLHCSISEMTRGDLSVLL 314
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR-AS 157
G AL+DMY KCG +E A +VF KM KD TW ++I GLA GH + ++ +F++M +
Sbjct: 315 GNALVDMYAKCGSIEIALQVFKKMREKDVTTWNSVIGGLAFHGHAEESIKLFAEMQALKN 374
Query: 158 IRLDEVTYVGVLSACTH 174
I+ +E+T+VGV+ AC+H
Sbjct: 375 IKPNEITFVGVIVACSH 391
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 73/154 (47%), Gaps = 18/154 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T++ + N G + IAR F +PER V W+A+ GY R A +F EM
Sbjct: 152 NTLIYFHSNCGDLVIARSIFYDLPERSVVSWSALTAGYARRGELGVARQIFDEM------ 205
Query: 80 RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAI 139
V+ L ++N +I Y K G++E A+ +F + KD TW MI G +
Sbjct: 206 -----PVKDLVSWN-------VMITGYVKNGEMENARTLFDEAPEKDVVTWNTMIAGYVL 253
Query: 140 SGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
G AL+MF +M DEVT + +LSAC
Sbjct: 254 RGEQRQALEMFEEMRNVGECPDEVTMLSLLSACA 287
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 21/145 (14%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G ++ A Q FAQ+ E D +W M+ G + + + L+ +M+ ++ D+FT +L
Sbjct: 61 GAINYAHQVFAQITEPDIFMWNTMMRGSSQSKNPSKVVLLYTQMENRGVKPDKFTFSFLL 120
Query: 90 T---------------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
F + FV LI + CGD+ A+ +F+ + +
Sbjct: 121 KGCTRLEWRKTGFCVHGKVLKYGFEVNSFVRNTLIYFHSNCGDLVIARSIFYDLPERSVV 180
Query: 129 TWTAMIVGLAISGHGDTALDMFSQM 153
+W+A+ G A G A +F +M
Sbjct: 181 SWSALTAGYARRGELGVARQIFDEM 205
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 88 ILTTFNND-------IFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAIS 140
I+ FN++ IF G I G + A +VF ++ D F W M+ G + S
Sbjct: 37 IIKGFNSNRAALRELIFAGAMTIS-----GAINYAHQVFAQITEPDIFMWNTMMRGSSQS 91
Query: 141 GHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+ + +++QM ++ D+ T+ +L CT
Sbjct: 92 KNPSKVVLLYTQMENRGVKPDKFTFSFLLKGCT 124
>gi|242082329|ref|XP_002445933.1| hypothetical protein SORBIDRAFT_07g028280 [Sorghum bicolor]
gi|241942283|gb|EES15428.1| hypothetical protein SORBIDRAFT_07g028280 [Sorghum bicolor]
Length = 498
Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 110/198 (55%), Gaps = 24/198 (12%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ A ++F M ++++SW ++ GY G++D+AR+ F MPE+D V WT MI GY +
Sbjct: 240 LPLARKMFDEMPIRNIVSWNAMLRGYAMNGEMDVARELFDVMPEKDVVSWTCMISGYAQA 299
Query: 61 NRFREALTLFREMQT-SNIRRDEFTTVRILTT-----------------------FNNDI 96
R+ + L LFR MQ+ +IR +E T V +L+ +N+
Sbjct: 300 GRYAQTLELFRTMQSHGDIRPNEVTMVSVLSACAHLTALEEGRWAHVFIDKHKMVLDNEF 359
Query: 97 FVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156
+G ALIDMY KCG + A ++F + +K+ W A+I GLA++ +D+F QM +
Sbjct: 360 NLGAALIDMYAKCGRTDLATKIFHSLDQKNVSAWNALITGLAVNSDARRCIDVFEQMKMS 419
Query: 157 SIRLDEVTYVGVLSACTH 174
+ D++T+V VL+AC H
Sbjct: 420 EEKPDDITFVSVLTACAH 437
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 89/177 (50%), Gaps = 21/177 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYL 58
+G A +F M +++ +SW+ +V Y G++D+AR+ F +MP R+ + W M+ G+
Sbjct: 176 IGNARRVFDEMPHRNGVSWSVMVGAYAAAGELDVAREMFDRMPAIGRNIITWNLMVTGFG 235
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
R A +F EM NI ++N A++ Y G+++ A+ +
Sbjct: 236 RHGLLPLARKMFDEMPIRNI-----------VSWN-------AMLRGYAMNGEMDVAREL 277
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML-RASIRLDEVTYVGVLSACTH 174
F M KD +WT MI G A +G L++F M IR +EVT V VLSAC H
Sbjct: 278 FDVMPEKDVVSWTCMISGYAQAGRYAQTLELFRTMQSHGDIRPNEVTMVSVLSACAH 334
>gi|357466867|ref|XP_003603718.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355492766|gb|AES73969.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 629
Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats.
Identities = 74/198 (37%), Positives = 115/198 (58%), Gaps = 26/198 (13%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A ++F N++V+ WT++VSGY + G V+ R F +MP+R+ +AM+ GY+R +
Sbjct: 174 LARQVFDESSNRNVVCWTSLVSGYCSCGLVNEVRDVFDKMPQRNEASNSAMVSGYVRNSF 233
Query: 63 FREALTLFREMQTSNIRRD--EFTTVRILTTFNN------------------------DI 96
F E + LFRE++ + R +F +++ N D+
Sbjct: 234 FSEGVQLFRELKKKDKGRARVKFNGALLVSVLNACTVMGAFEEGKWIHSYVEENGLEYDL 293
Query: 97 FVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156
+G ALID Y KCG V+ A++VF KML KD TW+AMI+GLAI+G+ AL++F +M +
Sbjct: 294 ELGTALIDFYAKCGWVKDAEKVFDKMLVKDVATWSAMILGLAINGNNKMALELFEKMEKV 353
Query: 157 SIRLDEVTYVGVLSACTH 174
+ +EVT+VGVL+AC H
Sbjct: 354 GPKPNEVTFVGVLTACNH 371
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 31/143 (21%), Positives = 67/143 (46%), Gaps = 18/143 (12%)
Query: 29 RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFT---- 84
RG A F MP + + ++I Y ++F ++L++F +M NIR + T
Sbjct: 71 RGDFRYAETLFTHMPNPNIFDYNSIITSYTTNSQFDKSLSVFTKMLNMNIRPNSHTFTTL 130
Query: 85 --------------TVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTW 130
T+ + + ++D++ ++I+++ K G + A++VF + ++ W
Sbjct: 131 VKSCVTLSSLEQVFTLTMKSGNSSDVYFVSSVINVFSKHGAIHLARQVFDESSNRNVVCW 190
Query: 131 TAMIVGLAISGHGDTALDMFSQM 153
T+++ G G + D+F +M
Sbjct: 191 TSLVSGYCSCGLVNEVRDVFDKM 213
Score = 44.3 bits (103), Expect = 0.020, Method: Composition-based stats.
Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 23/146 (15%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T ++ Y G V A + F +M +D W+AMI G + AL LF +M+ +
Sbjct: 297 TALIDFYAKCGWVKDAEKVFDKMLVKDVATWSAMILGLAINGNNKMALELFEKMEKVGPK 356
Query: 80 RDEFTTVRILTTFNNDIFVGIA----------------------LIDMYCKCGDVEKAQR 117
+E T V +LT N+ G + ++D+ + G V+KA
Sbjct: 357 PNEVTFVGVLTACNHKSLFGESSRLFGIMSEKYNITPSIEHYGCIVDILARSGQVKKALI 416
Query: 118 VFWKM-LRKDKFTWTAMIVGLAISGH 142
M + D W +++ G + GH
Sbjct: 417 FINSMHIEPDGAIWGSLLNGCLMHGH 442
>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
Length = 531
Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats.
Identities = 70/197 (35%), Positives = 105/197 (53%), Gaps = 23/197 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A E+F KD++SW +++ Y G + AR+ F P+RD V W AMI GY+R
Sbjct: 196 IGAARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRC 255
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT-----------------------FNNDIF 97
++A+ LF +MQ + D T + +L+
Sbjct: 256 GSHKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDMDAGRRLHRFLSGRFSRIGPSTV 315
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
+G ALIDMY KCG + A VFW M K+ TW ++I GLA+ GH A+D+F +ML+ +
Sbjct: 316 LGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHVTEAIDVFQKMLQGN 375
Query: 158 IRLDEVTYVGVLSACTH 174
++ DE+T+V VL AC+H
Sbjct: 376 VKPDEITFVAVLVACSH 392
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 43/143 (30%), Positives = 62/143 (43%), Gaps = 18/143 (12%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G + A F D V W+AMI G+ R A LF E + V+ L
Sbjct: 163 GDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAARELFDE-----------SPVKDL 211
Query: 90 TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDM 149
++N +I Y K GD+ A+ +F +D +W AMI G G A+++
Sbjct: 212 VSWN-------VMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSHKQAMEL 264
Query: 150 FSQMLRASIRLDEVTYVGVLSAC 172
F QM + D VT + +LSAC
Sbjct: 265 FEQMQAMGEKPDTVTMLSLLSAC 287
Score = 48.5 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 39/151 (25%), Positives = 62/151 (41%), Gaps = 27/151 (17%)
Query: 29 RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN------IRRDE 82
RG AR F ++P D ++ +I G R+A++++ M + +R D+
Sbjct: 55 RGGTAHARLVFDRIPHPDRFMYNTLIRGAAHSYAPRDAVSIYARMARHSAGCGGGVRPDK 114
Query: 83 FTTVRILTTF---------------------NNDIFVGIALIDMYCKCGDVEKAQRVFWK 121
T +L +D FV ALI M+ CGD+ A +F
Sbjct: 115 RTFPFVLRACAAMGASETGAQVHAHVVKAGCESDAFVRNALIGMHATCGDLGAAAALFDG 174
Query: 122 MLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
R+D W+AMI G A G A ++F +
Sbjct: 175 EAREDAVAWSAMISGFARRGDIGAARELFDE 205
>gi|359489007|ref|XP_002278681.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 663
Score = 138 bits (348), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 108/193 (55%), Gaps = 21/193 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M DV+SW+ +V ++ G++++ARQ F +MPERD V WT M+ GY + R
Sbjct: 340 AHQVFNEMVGADVVSWSGLVVAHVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKRS 399
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN--DIFVGI-------------------AL 102
REAL LFREM+ +R DE V +++ + D+ G AL
Sbjct: 400 REALELFREMRDVGVRPDEVAMVSVISACTSLGDLETGFEVHRYIDENGFGWMVSLCNAL 459
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG ++ A +VF M RK TW +MI A G+ + A +F+ ML + IR D
Sbjct: 460 IDMYAKCGCMDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLYSGIRPDG 519
Query: 163 VTYVGVLSACTHN 175
VT++ +L+A TH
Sbjct: 520 VTFLALLTAYTHK 532
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 85/208 (40%), Gaps = 45/208 (21%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP----ERDYVLWTAMIDG 56
+ +A +F + + + T++ GY + Q F QM + D +T ++ G
Sbjct: 232 LHYADRLFSQIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLLKG 291
Query: 57 YLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYC--------- 107
+R R L L + DE + F +FV ALI +Y
Sbjct: 292 R---SRMRIDLPLI-------VASDEIHGAVLKLGFCFHLFVMNALIHLYAARGVPAAAH 341
Query: 108 ----------------------KCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDT 145
+ G++E A++VF++M +D +WT M+ G A +
Sbjct: 342 QVFNEMVGADVVSWSGLVVAHVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKRSRE 401
Query: 146 ALDMFSQMLRASIRLDEVTYVGVLSACT 173
AL++F +M +R DEV V V+SACT
Sbjct: 402 ALELFREMRDVGVRPDEVAMVSVISACT 429
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 76/176 (43%), Gaps = 32/176 (18%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP----ERDYVLWTAMIDG 56
M A ++F NM+ K +I+W +++S N G + A + F M D V + A++
Sbjct: 469 MDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLYSGIRPDGVTFLALLTA 528
Query: 57 YLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGI----ALIDMYCKCGDV 112
Y + LF MQ RD + G+ ++DM + G +
Sbjct: 529 YTHKGWVDDGYGLFESMQ-----RD------------YGVEAGVEHYGCMVDMLGRAGRL 571
Query: 113 EKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL--DEVTY 165
E+A ++ M + + W A++ I +GD ++M ++L+ I L DE Y
Sbjct: 572 EEAYKLITSMSMPCNDVVWGALLAACRI--YGD--VEMGERVLKKLIELKPDEGGY 623
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 29 RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRI 88
RG++++ RQ M V WT M+ Y + R RE L LFRE++ +R + T+ +
Sbjct: 102 RGELELPRQ--VMMKYLGDVSWTVMVSMYAQAKRSREPLELFREIRDVRVRPTDVVTMGV 159
>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
Length = 983
Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats.
Identities = 71/192 (36%), Positives = 105/192 (54%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
AL + + D ++ T+++ Y G+V AR F +MP R+ V W+AM++GY++
Sbjct: 265 ALVLLRTAASVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDG 324
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT------------------FNN---DIFVGIAL 102
REAL LF MQ +R D+ V +L NN +F+G AL
Sbjct: 325 REALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTAL 384
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY KCG+++ A VF M K+ WT MI GLA+ G G AL++FSQM R ++ D+
Sbjct: 385 VDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDD 444
Query: 163 VTYVGVLSACTH 174
+ ++G L ACTH
Sbjct: 445 IAFIGALCACTH 456
Score = 43.1 bits (100), Expect = 0.041, Method: Composition-based stats.
Identities = 42/180 (23%), Positives = 71/180 (39%), Gaps = 59/180 (32%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A+E+F MK K+V++WTT++ G G
Sbjct: 394 MQLAMEVFKVMKEKNVLAWTTMIKGLAMHG------------------------------ 423
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKC---GDVEKAQR 117
R EAL LF +M+ ++ D+ IA I C C G V+K +
Sbjct: 424 -RGSEALELFSQMERLGVKPDD-----------------IAFIGALCACTHTGLVDKGRE 465
Query: 118 VFWKMLRKDKFT-----WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+F M+RK + M+ LA +G + A +M +M ++ D + + +++ C
Sbjct: 466 LFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKM---PMKPDALIWGALMAGC 522
>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
Length = 951
Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats.
Identities = 71/192 (36%), Positives = 105/192 (54%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
AL + + D ++ T+++ Y G+V AR F +MP R+ V W+AM++GY++
Sbjct: 265 ALVLLRTAASVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDG 324
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT------------------FNN---DIFVGIAL 102
REAL LF MQ +R D+ V +L NN +F+G AL
Sbjct: 325 REALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTAL 384
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY KCG+++ A VF M K+ WT MI GLA+ G G AL++FSQM R ++ D+
Sbjct: 385 VDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDD 444
Query: 163 VTYVGVLSACTH 174
+ ++G L ACTH
Sbjct: 445 IAFIGALCACTH 456
Score = 43.1 bits (100), Expect = 0.041, Method: Composition-based stats.
Identities = 42/180 (23%), Positives = 71/180 (39%), Gaps = 59/180 (32%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A+E+F MK K+V++WTT++ G G
Sbjct: 394 MQLAMEVFKVMKEKNVLAWTTMIKGLAMHG------------------------------ 423
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKC---GDVEKAQR 117
R EAL LF +M+ ++ D+ IA I C C G V+K +
Sbjct: 424 -RGSEALELFSQMERLGVKPDD-----------------IAFIGALCACTHTGLVDKGRE 465
Query: 118 VFWKMLRKDKFT-----WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+F M+RK + M+ LA +G + A +M +M ++ D + + +++ C
Sbjct: 466 LFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKM---PMKPDALIWGALMAGC 522
>gi|255569325|ref|XP_002525630.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535066|gb|EEF36748.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 765
Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats.
Identities = 72/193 (37%), Positives = 103/193 (53%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M+ KD+ SWTT++ GY R D AR F MP +D W +I Y + +
Sbjct: 287 ARRLFDKMEEKDIFSWTTMIDGYAKRRDFDAARSVFDAMPRQDISAWNVLISAYEQDGKP 346
Query: 64 REALTLFREMQTSNIRR-DEFTTVRILTTF-----------------NNDI----FVGIA 101
+EAL +F E+Q S + DE T V L+ DI + +
Sbjct: 347 KEALAIFHELQLSKTAKPDEVTLVSTLSACAQLGAIDIGGWIHVYIKKQDIKLNCHLTTS 406
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMY KCG+VEKA +F+ + R+D F W+AMI GLA+ G G A+D+F +M +R +
Sbjct: 407 LIDMYSKCGEVEKALDIFYSVDRRDVFVWSAMIAGLAMHGRGRAAIDLFFEMQETKVRPN 466
Query: 162 EVTYVGVLSACTH 174
VT+ +L AC+H
Sbjct: 467 AVTFTNLLCACSH 479
Score = 85.1 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 61/213 (28%), Positives = 91/213 (42%), Gaps = 53/213 (24%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ +++ Y + G +D A F ++ E+D V W +MI G++ +AL LF+ M+
Sbjct: 166 DLFILNSLIHCYASCGDLDSAYSVFVKIEEKDVVSWNSMIKGFVLGGCPDKALELFQLMK 225
Query: 75 TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVE 113
N+R ++ T V +L+ N ++ V A++DMY K G +E
Sbjct: 226 AENVRPNDVTMVGVLSACAKKMDLEFGRRVCHYIERNGINVNLTVSNAMLDMYVKNGSLE 285
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI--------------- 158
A+R+F KM KD F+WT MI G A D A +F M R I
Sbjct: 286 DARRLFDKMEEKDIFSWTTMIDGYAKRRDFDAARSVFDAMPRQDISAWNVLISAYEQDGK 345
Query: 159 -----------------RLDEVTYVGVLSACTH 174
+ DEVT V LSAC
Sbjct: 346 PKEALAIFHELQLSKTAKPDEVTLVSTLSACAQ 378
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 22/163 (13%)
Query: 32 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF-REMQTSNIRRDEFT------ 84
+D AR+ F ++ + + W +I + +L +F R + S ++FT
Sbjct: 81 LDYARKVFEEISQPNLYTWNTLIRAFASSPEPIHSLLIFIRMLYDSPDFPNKFTFPFVIK 140
Query: 85 ---------------TVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT 129
+ I + +D+F+ +LI Y CGD++ A VF K+ KD +
Sbjct: 141 AAAGVASLPFSQAIHGMAIKASLGSDLFILNSLIHCYASCGDLDSAYSVFVKIEEKDVVS 200
Query: 130 WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
W +MI G + G D AL++F M ++R ++VT VGVLSAC
Sbjct: 201 WNSMIKGFVLGGCPDKALELFQLMKAENVRPNDVTMVGVLSAC 243
>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 695
Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 103/176 (58%), Gaps = 21/176 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T+++ Y GQVD AR+ F +M +RD V W+AMI GY + +R +EAL LF EMQ N+
Sbjct: 261 TSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVY 320
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
+E T V +L + + +G LID Y KCG ++++ V
Sbjct: 321 PNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEV 380
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
F +M K+ FTWTA+I GLA +G G AL+ FS ML ++ ++VT++GVLSAC+H
Sbjct: 381 FKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSH 436
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T++ Y N GQ+ +AR F MPER V W +M+ GY + + E + LFR++ I
Sbjct: 160 NTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIE 219
Query: 80 RDEFTTVRILTTFNN--DIFVG-------------------IALIDMYCKCGDVEKAQRV 118
D+ T + +L ++ +G +LIDMY KCG V+ A+++
Sbjct: 220 FDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKL 279
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
F +M ++D W+AMI G A + AL++F +M + ++ +EVT V VL +C
Sbjct: 280 FDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCA 334
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 21/162 (12%)
Query: 32 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL-- 89
+D A F + + + + MI G AL LF++M +++ D+FT +L
Sbjct: 71 IDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKA 130
Query: 90 -------------------TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTW 130
+ F ++ FV LI MY CG + A+ VF M + W
Sbjct: 131 CSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAW 190
Query: 131 TAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+M+ G +G D + +F ++L I D+VT + VL AC
Sbjct: 191 NSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMAC 232
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
++ A +F + + + + MI GLA D AL +F +M S++ D+ T+ VL A
Sbjct: 71 IDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKA 130
Query: 172 CT 173
C+
Sbjct: 131 CS 132
Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERD 46
++E+F M K+V +WT ++ G N G+ +A ++F+ M E D
Sbjct: 377 SVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLEND 419
>gi|255578276|ref|XP_002530005.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530484|gb|EEF32367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 499
Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 107/192 (55%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F DV+SW+ +V ++ G++++ARQ F MPE+D V WTAM+ GY + N
Sbjct: 176 AWRVFNETVGVDVVSWSGLVLAHVRGGELELARQVFDDMPEKDVVSWTAMVSGYSKANCS 235
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN--DIFVGI-------------------AL 102
REAL LF EM + IR DE T V +++ N D+ G+ AL
Sbjct: 236 REALELFWEMSDAGIRPDEVTIVSVISACTNLGDVETGMNVHSYINENGFGWMVSLCNAL 295
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I+MY KCG V++A RVF M RK TW +MI A G+ + A ++FS ML + I D
Sbjct: 296 INMYAKCGCVDRAWRVFNNMKRKSLITWNSMISACANHGYAEDAFELFSCMLNSGIAPDG 355
Query: 163 VTYVGVLSACTH 174
+T++ +L A TH
Sbjct: 356 ITFLALLIAYTH 367
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 88/203 (43%), Gaps = 58/203 (28%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G + A++ F QMP+ + + +I GY + + + LF +M+ +++ DEFT ++
Sbjct: 64 GDLPYAQRLFDQMPQPNTFFYNTIIRGYAKSSSPSYCVNLFNQMRQNHVDPDEFTFNFLI 123
Query: 90 TT---------------------------FNNDIFVGIALIDMYC--------------- 107
F + +FV ALI++Y
Sbjct: 124 KARSRVHKVHNFPSTLECDEIHGAVFKYGFCSHLFVQNALINLYAVKGSPAAAWRVFNET 183
Query: 108 ----------------KCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
+ G++E A++VF M KD +WTAM+ G + + AL++F
Sbjct: 184 VGVDVVSWSGLVLAHVRGGELELARQVFDDMPEKDVVSWTAMVSGYSKANCSREALELFW 243
Query: 152 QMLRASIRLDEVTYVGVLSACTH 174
+M A IR DEVT V V+SACT+
Sbjct: 244 EMSDAGIRPDEVTIVSVISACTN 266
>gi|413925246|gb|AFW65178.1| hypothetical protein ZEAMMB73_703358 [Zea mays]
Length = 572
Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats.
Identities = 71/193 (36%), Positives = 103/193 (53%), Gaps = 23/193 (11%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A ++F M ++++SW +V GY G VD AR+ F MPE+D V WT M+ GY R R
Sbjct: 242 LARKMFDEMPARNLVSWNAMVRGYAVNGDVDGARELFDAMPEKDVVSWTCMVSGYARAGR 301
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILT-----------------------TFNNDIFVG 99
+AL LFR MQ+ ++R +E T V + + ++ +G
Sbjct: 302 HAQALELFRTMQSGDVRPNEVTMVSVFSACARLAALKEGRWAHAFIGKRGMVLDDGFNLG 361
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMY KCG + A +VF + RK+ W A+I GLA +G +D+F QM + +
Sbjct: 362 AALIDMYAKCGRPDVAAKVFRSLDRKNVSAWNALIAGLAANGDARRCIDVFEQMKVSDEK 421
Query: 160 LDEVTYVGVLSAC 172
D VT+V VL+AC
Sbjct: 422 PDSVTFVSVLAAC 434
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 58/180 (32%), Positives = 86/180 (47%), Gaps = 29/180 (16%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF---- 70
DV+SW T+V+GY G++ AR+ F MP R+ W+AM+ Y + A +F
Sbjct: 159 DVVSWNTVVAGYARCGELGNARRAFDGMPRRNGASWSAMVGAYAAAGQLDVARDMFDRAP 218
Query: 71 ---REMQTSN-------------IRRDEFTTV--RILTTFNNDIFVGIALIDMYCKCGDV 112
R + T N + R F + R L ++N A++ Y GDV
Sbjct: 219 AAGRSVVTWNSMVAGLARHGLLPLARKMFDEMPARNLVSWN-------AMVRGYAVNGDV 271
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+ A+ +F M KD +WT M+ G A +G AL++F M +R +EVT V V SAC
Sbjct: 272 DGARELFDAMPEKDVVSWTCMVSGYARAGRHAQALELFRTMQSGDVRPNEVTMVSVFSAC 331
>gi|297848882|ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
gi|297338164|gb|EFH68581.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
Length = 1329
Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats.
Identities = 68/195 (34%), Positives = 105/195 (53%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A + M K+ +W ++ GY G +++A F QMP +D + WT MI+GY R
Sbjct: 958 MDSANSLANQMPEKNEATWNCLIDGYTRLGNLELAESLFNQMPVKDIISWTTMINGYSRN 1017
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
R+REA+ +F +M I DE T +++ F D+++G
Sbjct: 1018 KRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTVQNGFVLDVYIG 1077
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+DMY KCG +E+A VF+ + +K+ F W ++I GLA G AL MF++M S++
Sbjct: 1078 SALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVK 1137
Query: 160 LDEVTYVGVLSACTH 174
+ VT+V V +ACTH
Sbjct: 1138 PNTVTFVSVFTACTH 1152
Score = 85.1 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 78/155 (50%), Gaps = 18/155 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
TT++ Y G++ AR+ F +MPERD V WT M+ Y +V A +L +M N
Sbjct: 915 TTLIGFYSASGRIREARKVFDEMPERDDVTWTTMVSAYRQVLDMDSANSLANQMPEKN-- 972
Query: 80 RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAI 139
T+N LID Y + G++E A+ +F +M KD +WT MI G +
Sbjct: 973 ---------EATWN-------CLIDGYTRLGNLELAESLFNQMPVKDIISWTTMINGYSR 1016
Query: 140 SGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+ A+ +F +M+ I DEVT V+SAC H
Sbjct: 1017 NKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAH 1051
Score = 42.0 bits (97), Expect = 0.093, Method: Composition-based stats.
Identities = 28/142 (19%), Positives = 59/142 (41%), Gaps = 19/142 (13%)
Query: 31 QVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT 90
++D+A + QM + + ++ A+I G++ + +L + M ++ +T ++
Sbjct: 827 RLDLAVSFMTQMQKPNVFVYNALIKGFVTCSHPIRSLEFYVRMLRDSVSPSSYTYSSLVQ 886
Query: 91 T-------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWT 131
F + + LI Y G + +A++VF +M +D TWT
Sbjct: 887 ASAFASGFGESLQAHIWKFGFGFHVQIQTTLIGFYSASGRIREARKVFDEMPERDDVTWT 946
Query: 132 AMIVGLAISGHGDTALDMFSQM 153
M+ D+A + +QM
Sbjct: 947 TMVSAYRQVLDMDSANSLANQM 968
>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 535
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 108/195 (55%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +++ M +D +SW +++SG++ GQ+ AR+ F +MP R V WT MI+GY R
Sbjct: 157 MSGAYQVYEEMTERDAVSWNSLISGHVRLGQMKSAREVFDEMPCRTIVSWTTMINGYARG 216
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
+ +AL +FREMQ I DE + + +L F + V
Sbjct: 217 GCYADALGIFREMQVVGIEPDEISVISVLPACAQLGALEVGKWIHKYSEKSGFLKNAGVF 276
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL++MY KCG +++A +F +M+ KD +W+ MI GLA G G A+ +F M +A +
Sbjct: 277 NALVEMYAKCGCIDEAWGLFNQMIEKDVISWSTMIGGLANHGKGYAAIRVFEDMQKAGVT 336
Query: 160 LDEVTYVGVLSACTH 174
+ VT+VGVLSAC H
Sbjct: 337 PNGVTFVGVLSACAH 351
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 76/200 (38%), Gaps = 53/200 (26%)
Query: 28 NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-QTSNIRRDEFTTV 86
N VD A F Q+ + + A+I Y ++ A+T+F +M T + D+FT
Sbjct: 51 NLSHVDYATMIFQQLENPNVFSYNAIIRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFP 110
Query: 87 RILTT--------FNNDIFVGI-------------ALIDMYCKCGDVEKAQRVFWKMLRK 125
++ + + + ALIDMY KCGD+ A +V+ +M +
Sbjct: 111 FVIKSCAGLLCRRLGQQVHAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEMTER 170
Query: 126 DK-------------------------------FTWTAMIVGLAISGHGDTALDMFSQML 154
D +WT MI G A G AL +F +M
Sbjct: 171 DAVSWNSLISGHVRLGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQ 230
Query: 155 RASIRLDEVTYVGVLSACTH 174
I DE++ + VL AC
Sbjct: 231 VVGIEPDEISVISVLPACAQ 250
>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 108/195 (55%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +F M ++V+SW+T+VSGY G +++AR F +MP ++ V WT +I G+
Sbjct: 236 MSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFAEK 295
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
+EA TL+ +M+ + ++ D+ T + IL + V
Sbjct: 296 GLAKEATTLYNQMEAAGLKPDDGTLISILAACAESGLLVLGKKVHASIKKIRIKCSVNVS 355
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+DMY KCG V+KA +F +M +D +W M+ GLA+ GHG+ A+ +FS+M + +
Sbjct: 356 NALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFK 415
Query: 160 LDEVTYVGVLSACTH 174
D+VT + +L ACTH
Sbjct: 416 PDKVTLIAILCACTH 430
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 93/173 (53%), Gaps = 18/173 (10%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
+A+++F M KD++SW +++ G + G + AR+ F +M ERD V W ++DGY++
Sbjct: 176 YAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEMAERDAVSWNTILDGYVKAGE 235
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM 122
+A LF +M N+ ++T ++ YCK GD+E A+ +F KM
Sbjct: 236 MSQAFNLFEKMPERNVV--SWST----------------MVSGYCKTGDMEMARMLFDKM 277
Query: 123 LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
K+ TWT +I G A G A +++QM A ++ D+ T + +L+AC +
Sbjct: 278 PFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAES 330
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 24/167 (14%)
Query: 10 NMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 69
N+ N D+ ++S + Q+++A F Q+ + + L+ +I +++ ++ +A
Sbjct: 50 NLHN-DLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNSQSLKAFAT 108
Query: 70 FREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCK 108
F +MQ + + D FT +L N D+FV +LID Y K
Sbjct: 109 FFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSK 168
Query: 109 CG--DVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
CG V A ++F +M KD +W +MI GL +G A +F +M
Sbjct: 169 CGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEM 215
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+V Y G+VD A F +M RD V W M+ G +A+ LF +MQ +
Sbjct: 356 NALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFK 415
Query: 80 RDEFTTVRILTTFNNDIFVGIAL 102
D+ T + IL + FV L
Sbjct: 416 PDKVTLIAILCACTHAGFVDQGL 438
>gi|297818204|ref|XP_002876985.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322823|gb|EFH53244.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 451
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 105/191 (54%), Gaps = 22/191 (11%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE 65
++F M + ++SWTT++ G ++ Q+D A F QMP R+ V WTAMI Y++ R E
Sbjct: 174 KVFDKMPGRSIVSWTTMLYGLVSNSQLDSAEIVFNQMPTRNVVSWTAMITAYVKNRRPDE 233
Query: 66 ALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALID 104
A LFR MQ +++ +EFT V +L F D ++G ALID
Sbjct: 234 AFQLFRRMQVDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNGFVLDCYLGTALID 293
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMF-SQMLRASIRLDEV 163
MY KCG ++ A++VF M K TW +MI L + G G+ AL +F AS+ D +
Sbjct: 294 MYSKCGSLQDARKVFDVMQSKSLATWNSMITSLGVHGCGEEALYLFEEMEEEASVEPDAI 353
Query: 164 TYVGVLSACTH 174
T+VGVLSAC +
Sbjct: 354 TFVGVLSACAN 364
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 21/145 (14%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFT----- 84
G+ A F Q+ W MI ++ REAL LF M + + D+FT
Sbjct: 66 GETQYASLVFNQLQSPSTFTWNLMIRSLSLNHKPREALLLFILMLSHQPQFDKFTFPFVI 125
Query: 85 -------TVRILTT---------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
++R+ T F ND+F L+D+Y KCG + ++VF KM +
Sbjct: 126 KACLASSSLRLGTQVHGLAIKAGFFNDVFFQNTLMDLYFKCGKPDCGRKVFDKMPGRSIV 185
Query: 129 TWTAMIVGLAISGHGDTALDMFSQM 153
+WT M+ GL + D+A +F+QM
Sbjct: 186 SWTTMLYGLVSNSQLDSAEIVFNQM 210
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%)
Query: 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
I ND + LI + G+ + A VF ++ FTW MI L+++ AL
Sbjct: 44 IKHNLTNDQLLVRQLISVSSSFGETQYASLVFNQLQSPSTFTWNLMIRSLSLNHKPREAL 103
Query: 148 DMFSQMLRASIRLDEVTYVGVLSAC 172
+F ML + D+ T+ V+ AC
Sbjct: 104 LLFILMLSHQPQFDKFTFPFVIKAC 128
>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 580
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 70/195 (35%), Positives = 107/195 (54%), Gaps = 24/195 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
+ IF M +DV+SWT++V+ Y +++ A F+QM E++ V WTA+I G+ + R
Sbjct: 202 SFSIFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFAQNGRG 261
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN------------------------DIFVG 99
EAL LF +M+ I FT +L+ + +IF+
Sbjct: 262 DEALHLFEQMREEGIPPSAFTFASVLSACADLALIARGKEIHGHIIRSTCIDYFCNIFIL 321
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMYCKCG + A +F M KD +W ++I G A +GHG+ +L +F +M+ A IR
Sbjct: 322 NALIDMYCKCGQMRSATTLFKGMHEKDIVSWNSLITGFAQNGHGEESLAVFERMIEADIR 381
Query: 160 LDEVTYVGVLSACTH 174
+ VT++G+LSAC H
Sbjct: 382 PNHVTFLGLLSACCH 396
Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 66/223 (29%), Positives = 96/223 (43%), Gaps = 54/223 (24%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F + K+ SW I+S Y G + A QMP+ + V + ++I G
Sbjct: 68 AHKVFHVLPVKNTHSWNIIISAYSRSGLFNEAHNLLDQMPKPNLVSYNSLISGLGHHGFR 127
Query: 64 REALTLFREM--QTSNIRRDEFTTVR---------------------ILTTFNNDIFVGI 100
+E+L +F+ M Q SN+ DEFT V I+ N++I +G
Sbjct: 128 KESLNVFKTMLKQCSNVLFDEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNIIIGN 187
Query: 101 ALIDMYCKCGD-------------------------------VEKAQRVFWKMLRKDKFT 129
ALID Y KCG+ +E A +F +M K+ +
Sbjct: 188 ALIDAYGKCGEPDISFSIFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVS 247
Query: 130 WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
WTA+I G A +G GD AL +F QM I T+ VLSAC
Sbjct: 248 WTALIAGFAQNGRGDEALHLFEQMREEGIPPSAFTFASVLSAC 290
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 71 REMQTSNIRRDEF-TTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT 129
R ++ + F T I TTF + LID Y KC ++ A +VF + K+ +
Sbjct: 28 RHLKLGKLLHSHFIKTALIFTTF-----LANRLIDFYSKCDSIQSAHKVFHVLPVKNTHS 82
Query: 130 WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
W +I + SG + A ++ QM + ++ V+Y ++S H+
Sbjct: 83 WNIIISAYSRSGLFNEAHNLLDQMPKPNL----VSYNSLISGLGHH 124
Score = 36.2 bits (82), Expect = 4.6, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 7/118 (5%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERD----YVLWTAMIDG 56
M A +F M KD++SW ++++G+ G + + F +M E D +V + ++
Sbjct: 334 MRSATTLFKGMHEKDIVSWNSLITGFAQNGHGEESLAVFERMIEADIRPNHVTFLGLLSA 393
Query: 57 YLRVNRFREALTLFREMQTSN---IRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGD 111
E L + M+ R D + + L NN + + LI K D
Sbjct: 394 CCHTGLVSEGLRILDSMEKDYGVCPRSDHYAIMIDLLGRNNRLEEAMGLIKRAPKGSD 451
>gi|115477124|ref|NP_001062158.1| Os08g0500600 [Oryza sativa Japonica Group]
gi|42407356|dbj|BAD08817.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|42407750|dbj|BAD08896.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113624127|dbj|BAF24072.1| Os08g0500600 [Oryza sativa Japonica Group]
Length = 429
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 112/198 (56%), Gaps = 24/198 (12%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ A ++F M ++++SW ++ GY +D AR+ F MPE+D V WT MI GY +
Sbjct: 104 LPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQA 163
Query: 61 NRFREALTLFREMQT-SNIRRDEFTTVRILTT-----------------------FNNDI 96
R+++ L LFR MQT SN++ +E T V +L+ NN+
Sbjct: 164 GRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEY 223
Query: 97 FVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156
+G ALIDMY KCG + A ++F + RK+ W A+I LA++G+ ++D F QM R
Sbjct: 224 NLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRT 283
Query: 157 SIRLDEVTYVGVLSACTH 174
+ +++T+VGVL+AC+H
Sbjct: 284 GEKPNDITFVGVLTACSH 301
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 92/177 (51%), Gaps = 21/177 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYL 58
M A +F M ++ +SW+T+V GY G++D+AR+ F +MP R+ V W +M+ G+
Sbjct: 40 MESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIGRNVVTWNSMVTGFA 99
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
R A +F EM VR L ++N A++ Y D++ A+ +
Sbjct: 100 RHGLLPLARKMFDEM-----------PVRNLVSWN-------AMLRGYSVNSDMDGAREL 141
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM-LRASIRLDEVTYVGVLSACTH 174
F M KD +WT MI G A +G L++F M ++++ +EVT V VLSAC +
Sbjct: 142 FDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACAN 198
>gi|242072866|ref|XP_002446369.1| hypothetical protein SORBIDRAFT_06g014910 [Sorghum bicolor]
gi|241937552|gb|EES10697.1| hypothetical protein SORBIDRAFT_06g014910 [Sorghum bicolor]
Length = 474
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 106/194 (54%), Gaps = 22/194 (11%)
Query: 4 ALEIFGNMKN-KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A +F M + DV+S+ ++ Y+N G+V +AR+ F +MP RD W +I G + R
Sbjct: 150 ARRVFEEMPSAPDVVSYNALMHAYVNAGRVGVAREVFEEMPVRDATSWGTVIAGCAKAGR 209
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTF---------------------NNDIFVGIA 101
EA+ LF M+ R D V +L+ + ++F+
Sbjct: 210 LEEAVLLFDRMREEGFRPDSVALVAVLSCCAQLGALDKGQEVHEYIKLSRTSPNVFLCTG 269
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+D+Y KCG VE+A+ VF ++ FTW A+IVGLA+ GHG AL+ F+QML I+ D
Sbjct: 270 LVDLYAKCGCVEEAREVFEACQDRNVFTWNALIVGLAMHGHGTVALEYFNQMLADGIQSD 329
Query: 162 EVTYVGVLSACTHN 175
VT++GVL AC+HN
Sbjct: 330 GVTFLGVLIACSHN 343
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 68/165 (41%), Gaps = 22/165 (13%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ +V T +V Y G V+ AR+ F +R+ W A+I G AL F +
Sbjct: 261 SPNVFLCTGLVDLYAKCGCVEEAREVFEACQDRNVFTWNALIVGLAMHGHGTVALEYFNQ 320
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF---- 128
M I+ D T + +L +++ L+DM A+R+F M K
Sbjct: 321 MLADGIQSDGVTFLGVLIACSHN-----GLVDM---------ARRIFSDMESKHNVHREL 366
Query: 129 -TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+ M L +G + A+DM +M + D + G+L+ C
Sbjct: 367 KHYGCMADLLGRAGLIEEAMDMVRKM---PMEGDSYVWGGILAGC 408
>gi|296082950|emb|CBI22251.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 108/193 (55%), Gaps = 21/193 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M DV+SW+ +V ++ G++++ARQ F +MPERD V WT M+ GY + R
Sbjct: 153 AHQVFNEMVGADVVSWSGLVVAHVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKRS 212
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN--DIFVGI-------------------AL 102
REAL LFREM+ +R DE V +++ + D+ G AL
Sbjct: 213 REALELFREMRDVGVRPDEVAMVSVISACTSLGDLETGFEVHRYIDENGFGWMVSLCNAL 272
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG ++ A +VF M RK TW +MI A G+ + A +F+ ML + IR D
Sbjct: 273 IDMYAKCGCMDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLYSGIRPDG 332
Query: 163 VTYVGVLSACTHN 175
VT++ +L+A TH
Sbjct: 333 VTFLALLTAYTHK 345
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 85/208 (40%), Gaps = 45/208 (21%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP----ERDYVLWTAMIDG 56
+ +A +F + + + T++ GY + Q F QM + D +T ++ G
Sbjct: 45 LHYADRLFSQIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLLKG 104
Query: 57 YLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYC--------- 107
+R R L L + DE + F +FV ALI +Y
Sbjct: 105 R---SRMRIDLPLI-------VASDEIHGAVLKLGFCFHLFVMNALIHLYAARGVPAAAH 154
Query: 108 ----------------------KCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDT 145
+ G++E A++VF++M +D +WT M+ G A +
Sbjct: 155 QVFNEMVGADVVSWSGLVVAHVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKRSRE 214
Query: 146 ALDMFSQMLRASIRLDEVTYVGVLSACT 173
AL++F +M +R DEV V V+SACT
Sbjct: 215 ALELFREMRDVGVRPDEVAMVSVISACT 242
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 24/172 (13%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP----ERDYVLWTAMIDG 56
M A ++F NM+ K +I+W +++S N G + A + F M D V + A++
Sbjct: 282 MDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLYSGIRPDGVTFLALLTA 341
Query: 57 YLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQ 116
Y + LF MQ RD + ++DM + G +E+A
Sbjct: 342 YTHKGWVDDGYGLFESMQ-----RDYGVEAGVEHYG--------CMVDMLGRAGRLEEAY 388
Query: 117 RVFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL--DEVTY 165
++ M + + W A++ I +GD ++M ++L+ I L DE Y
Sbjct: 389 KLITSMSMPCNDVVWGALLAACRI--YGD--VEMGERVLKKLIELKPDEGGY 436
>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats.
Identities = 68/192 (35%), Positives = 107/192 (55%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +D +SW T++SG++ GQ+ AR F +M ++ WTA++ GY R+ +
Sbjct: 171 AHKVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCY 230
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
+AL FR MQ I DE + V +L F +I V AL
Sbjct: 231 ADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNAL 290
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I+MY KCG +++ +R+F +M +D +W+ MIVGLA G A+++F +M +A I +
Sbjct: 291 IEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNI 350
Query: 163 VTYVGVLSACTH 174
+T+VG+LSAC H
Sbjct: 351 ITFVGLLSACAH 362
Score = 49.7 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 44/204 (21%), Positives = 80/204 (39%), Gaps = 57/204 (27%)
Query: 28 NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN-----IRRDE 82
+ + + A F ++ + + L+ AMI Y + A+T++++M + I D+
Sbjct: 58 HHAETEYANLLFKRVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDK 117
Query: 83 FTTVRILTTF---------------------NNDIFVGIALIDMYCKCGDVEKAQRVFWK 121
FT ++ + ++ V +L++MY KC ++ A +VF +
Sbjct: 118 FTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEE 177
Query: 122 MLRKDK-------------------------------FTWTAMIVGLAISGHGDTALDMF 150
M +D F+WTA++ G A G AL+ F
Sbjct: 178 MTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFF 237
Query: 151 SQMLRASIRLDEVTYVGVLSACTH 174
+M I DE++ V VL AC
Sbjct: 238 RRMQMVGIEPDEISLVSVLPACAQ 261
>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats.
Identities = 71/193 (36%), Positives = 107/193 (55%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVNR 62
A ++F M NK V+SW T++ Y A + F +M + W MI+G++ +
Sbjct: 129 ARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSD 188
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIA 101
+ EAL+LF EMQ S ++ D+ T +L + D+ +G A
Sbjct: 189 YEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTA 248
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+DMY KCG +E A RVF +M KD TWTA+IVGLA+ G G AL++F +M + ++ D
Sbjct: 249 LVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPD 308
Query: 162 EVTYVGVLSACTH 174
+T+VGVL+AC+H
Sbjct: 309 AITFVGVLAACSH 321
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 48/197 (24%), Positives = 80/197 (40%), Gaps = 50/197 (25%)
Query: 28 NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVR 87
+ G + AR F Q+P ++I GY N R+A+ ++ M + D FT
Sbjct: 24 DSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPS 83
Query: 88 ILTT------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT 129
+ + F +D ++ L++MY CG + A++VF KM+ K +
Sbjct: 84 LFKSCGVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVS 143
Query: 130 WTAMIVGLA---------------------------ISGH-----GDTALDMFSQMLRAS 157
W MI A I+GH + AL +F++M +
Sbjct: 144 WATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSG 203
Query: 158 IRLDEVTYVGVLSACTH 174
++ D+VT +L ACTH
Sbjct: 204 VKGDKVTMASLLIACTH 220
>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 622
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 108/192 (56%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A IFG M +DV+SWT++V+GY G V+ AR+ F +MP R+ W+ MI+GY + N F
Sbjct: 171 AGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCF 230
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
+A+ LF M+ + +E V ++++ + ++ +G AL
Sbjct: 231 EKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTAL 290
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DM+ +CGD+EKA VF + D +W+++I GLA+ GH A+ FSQM+ +
Sbjct: 291 VDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRD 350
Query: 163 VTYVGVLSACTH 174
VT+ VLSAC+H
Sbjct: 351 VTFTAVLSACSH 362
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 84/206 (40%), Gaps = 43/206 (20%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G+A IF ++N ++ + ++ + + A ++ QM + +W I +
Sbjct: 67 LGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSR--IWPDNITFPFLI 124
Query: 61 NRFRE-ALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119
E L E S I R F ND++V +L+ MY CG + A R+F
Sbjct: 125 KASSEMECVLVGEQTHSQIVR---------FGFQNDVYVENSLVHMYANCGFIAAAGRIF 175
Query: 120 WKMLRKDKFTWTAMIVG--------------------------LAISGHG-----DTALD 148
+M +D +WT+M+ G + I+G+ + A+D
Sbjct: 176 GQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAID 235
Query: 149 MFSQMLRASIRLDEVTYVGVLSACTH 174
+F M R + +E V V+S+C H
Sbjct: 236 LFEFMKREGVVANETVMVSVISSCAH 261
>gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa]
gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 108/195 (55%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +F +M ++V+SW+T+VSGY G +++AR F +MP ++ V WT ++ GY
Sbjct: 59 MNKAFGLFESMPERNVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVK 118
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGI-------------------- 100
++A+ F +M+ + ++ D+ T + IL + +G+
Sbjct: 119 GLAKDAIRSFEQMEEAGLKPDDGTVISILASCAESGLLGLGKRVHTSIERIRYKCSVNVS 178
Query: 101 -ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+DMY KCG V++A VF M +KD +W M+ GLA+ GHG+ AL +FS M + R
Sbjct: 179 NALVDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFR 238
Query: 160 LDEVTYVGVLSACTH 174
D+VT V VL AC H
Sbjct: 239 PDKVTLVAVLCACVH 253
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 89/171 (52%), Gaps = 18/171 (10%)
Query: 5 LEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFR 64
+ +F M +DV+SW +++ G + G++ A + F +MP +D V W ++DGY++
Sbjct: 1 MRLFKVMDERDVVSWNSMIRGLLKVGELSEACKLFDEMPMKDAVSWNTILDGYVKAGEMN 60
Query: 65 EALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124
+A LF M N+ ++T ++ YCK GD+E A+ +F +M
Sbjct: 61 KAFGLFESMPERNVV--SWST----------------MVSGYCKAGDMEMARMLFDRMPV 102
Query: 125 KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
K+ +WT ++ G A+ G A+ F QM A ++ D+ T + +L++C +
Sbjct: 103 KNLVSWTIIVSGYAVKGLAKDAIRSFEQMEEAGLKPDDGTVISILASCAES 153
>gi|357131531|ref|XP_003567390.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Brachypodium distachyon]
Length = 531
Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats.
Identities = 67/189 (35%), Positives = 108/189 (57%), Gaps = 21/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M +D SW+ ++ GY RG + AR+ F +MP ++ V WTAMI+GY + R +E+
Sbjct: 201 VFDEMPTRDSSSWSVLIVGYCKRGSMQSARELFDKMPGKNLVTWTAMINGYAQCGRPKES 260
Query: 67 LTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDM 105
++LFRE++ I D T V ++++ + V AL+DM
Sbjct: 261 ISLFRELEAVGIEPDAATMVGVISSASQIGSTALAGWVGNYVDRKRIERNEKVLTALVDM 320
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
+ KCG+VE+A F ++ + D + +TA+I GLA GH AL +F +M ++R D +T+
Sbjct: 321 HAKCGNVEQALNCFREIEQPDAYPYTALISGLATHGHSTLALQVFERMRAQAVRPDPITF 380
Query: 166 VGVLSACTH 174
VGVL+AC+H
Sbjct: 381 VGVLTACSH 389
Score = 76.3 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 49/160 (30%), Positives = 72/160 (45%), Gaps = 18/160 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D +S+ +++ + V A F MP R V W AM+ Y+ F A +F EM
Sbjct: 147 DAVSFNSLLCAHARLASVPAAESLFTSMPSRTQVSWNAMVVVYVNAGDFASARLVFDEMP 206
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
T RD + LI YCK G ++ A+ +F KM K+ TWTAMI
Sbjct: 207 T----RDSSSWS--------------VLIVGYCKRGSMQSARELFDKMPGKNLVTWTAMI 248
Query: 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
G A G ++ +F ++ I D T VGV+S+ +
Sbjct: 249 NGYAQCGRPKESISLFRELEAVGIEPDAATMVGVISSASQ 288
>gi|347954498|gb|AEP33749.1| chloroplast biogenesis 19, partial [Crucihimalaya wallichii]
Length = 491
Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 106/189 (56%), Gaps = 21/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M++ + ++W T++ GY+ GQVD A + F +MPERD + WTAMI+G+++ EA
Sbjct: 122 VFDYMEDINSVTWNTMIDGYMRSGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEA 181
Query: 67 LTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDM 105
L FREMQ S +R D + L F N++ V +LID+
Sbjct: 182 LVWFREMQISGVRPDYVAIIAALNACTNLGALSFGLWVHRYVMNQDFKNNVRVSNSLIDL 241
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
YC+CG VE A+ VF KM ++ +W ++IVG A +G+ +L F +M + D VT+
Sbjct: 242 YCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTF 301
Query: 166 VGVLSACTH 174
G L+AC+H
Sbjct: 302 TGALTACSH 310
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 74/193 (38%), Gaps = 55/193 (28%)
Query: 37 QYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT------ 90
Q Q V WT+ I R R EA F +M+ S + + T + +L+
Sbjct: 17 QRLNQSTSETTVSWTSRITLLTRNGRLAEAAKXFSDMRLSGVEPNHITFIALLSGCGDFP 76
Query: 91 ----TFNN--------------DIFVGIALIDMYCKCGDVEKAQRVF----------W-- 120
T +N + VG A+I MY K G V+KA+ VF W
Sbjct: 77 SGSETLSNLLHGYACKLGLDRTHVMVGTAIIGMYSKRGHVKKARLVFDYMEDINSVTWNT 136
Query: 121 -------------------KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
KM +D +WTAMI G G + AL F +M + +R D
Sbjct: 137 MIDGYMRSGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALVWFREMQISGVRPD 196
Query: 162 EVTYVGVLSACTH 174
V + L+ACT+
Sbjct: 197 YVAIIAALNACTN 209
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 17/127 (13%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYL 58
FA E+F M+ + V+SW +++ G+ G + YF +M E D V +T +
Sbjct: 250 FAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACS 309
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
V E L F+ M +RD + RI L+D+Y + G +E A +V
Sbjct: 310 HVGLVEEGLRYFQTM-----KRDYGISPRIEHYG--------CLVDLYSRAGRLEDALKV 356
Query: 119 FWKMLRK 125
M K
Sbjct: 357 IESMPMK 363
>gi|147818273|emb|CAN64718.1| hypothetical protein VITISV_026719 [Vitis vinifera]
Length = 499
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 107/197 (54%), Gaps = 22/197 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +F M +D+ SWTT+++ Y N V+ AR+ F +MPER V ++AM+ Y+R
Sbjct: 138 MDSARRVFDGMGYRDIASWTTLLACYANSCSVEAARKVFDEMPERSVVSYSAMLAAYVRG 197
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN----------------------DIFV 98
NRFREAL LFRE+ + I + + +L N D +
Sbjct: 198 NRFREALELFRELFSVKIEPSDSCVMSVLCACANLGALDVGRWVYSFVCHSKGDYVDSRI 257
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
ALIDM+ KCG +E A VF K WTAM+ GLA+ G G+ ++ F +M+ + I
Sbjct: 258 ATALIDMFFKCGSIEHALLVFEGAKEKHVGEWTAMLSGLAMHGLGEQLIEAFEKMVDSGI 317
Query: 159 RLDEVTYVGVLSACTHN 175
+ DEVT+V +LS C+H+
Sbjct: 318 KPDEVTFVALLSGCSHS 334
>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
Length = 644
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 108/192 (56%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M ++VISW ++SG+ GQV+ A + F MPE + V W AMI GY + +
Sbjct: 310 AFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQA 369
Query: 64 REALTLFREMQTSNIRRD---------------------EFTTVRILTTFNNDIFVGIAL 102
AL LF +MQ +++ + E V I + F +D+ VG L
Sbjct: 370 ENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTL 429
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+ MY KCG +E A++VF +M ++D + +AMIVG AI+G +L++F QM ++ D
Sbjct: 430 VGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDR 489
Query: 163 VTYVGVLSACTH 174
VT+VGVLSAC H
Sbjct: 490 VTFVGVLSACCH 501
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 93/186 (50%), Gaps = 17/186 (9%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
FA E+F M +DV+SW +++GY+ G ++ A + F ++P+RD + W M+ GY +
Sbjct: 216 FARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMAGYAQCGD 275
Query: 63 FREALTLFREMQTSNI---------------RRDEFTTVRILTTFNNDIFVGIALIDMYC 107
A+ LF +M N+ ++ F +I+ N + A+I +
Sbjct: 276 VENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERN--VISWNAVISGFA 333
Query: 108 KCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVG 167
+ G VE+A ++F M + +W AMI G + +G + AL +F QM ++ + T+
Sbjct: 334 QNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAI 393
Query: 168 VLSACT 173
VL AC
Sbjct: 394 VLPACA 399
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 84/163 (51%), Gaps = 18/163 (11%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
+D+ +VS Y+ G + AR+ F +MP ++ V WTAMI Y R +EAL F EM
Sbjct: 98 QDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEM 157
Query: 74 QTSNIRRDEFTTVRILTT------------------FNNDIFVGIALIDMYCKCGDVEKA 115
Q I+ + FT IL F +++FVG L+DMY K G +E A
Sbjct: 158 QDVGIQPNHFTFASILPACTDLEVLGEFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFA 217
Query: 116 QRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
+ +F KM ++D +W AMI G +G + AL +F ++ + +
Sbjct: 218 RELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDV 260
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 22/144 (15%)
Query: 52 AMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL---------------------T 90
++ + R REAL + ++M + I T +L T
Sbjct: 34 GLVKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQT 93
Query: 91 TFN-NDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDM 149
F DI +G L+ +Y K G + +A+RVF +M K+ +WTAMI A HG AL
Sbjct: 94 QFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGF 153
Query: 150 FSQMLRASIRLDEVTYVGVLSACT 173
F +M I+ + T+ +L ACT
Sbjct: 154 FYEMQDVGIQPNHFTFASILPACT 177
>gi|357508535|ref|XP_003624556.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499571|gb|AES80774.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 476
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 108/190 (56%), Gaps = 21/190 (11%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE 65
++F M+ ++V+SWTT+++G + G++D AR+ F ++P ++ V WTAMI+GY++ + +
Sbjct: 175 KVFDKMRVRNVVSWTTVIAGLVACGKLDTAREVFERIPSKNVVSWTAMINGYVKNDNPIK 234
Query: 66 ALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALID 104
A LF M N+R +EFT V ++ F F+G AL+D
Sbjct: 235 AFDLFERMLIDNVRPNEFTLVSLIKACTDLGSLKLGRRMHDFALKNGFELGPFLGTALVD 294
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVT 164
MY KCG ++ A +VF M ++ TW M+ + G G+ LD+F +M +A + D +T
Sbjct: 295 MYSKCGSLDAAVKVFGLMEVRNLATWNTMLTSFGVHGFGNEVLDLFKEMEKAGVVPDAIT 354
Query: 165 YVGVLSACTH 174
+VGVLSAC
Sbjct: 355 FVGVLSACVQ 364
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 81/197 (41%), Gaps = 53/197 (26%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G++D A F Q+ + D W MI Y ++++ LF++M D+FT ++
Sbjct: 66 GKIDYASLVFDQLNDPDIFTWNVMIRAYNTSGLPQKSIFLFKDMICCGFLPDKFTYPFVI 125
Query: 90 TT---------------------FNNDIFVGIALIDMYCKCG-DVEKAQRVFWKMLRKDK 127
F +D++V ++++Y K G DV+ +VF KM ++
Sbjct: 126 NACIASGVIDFGRLTHGLAIKMGFWSDVYVQNNMMNLYFKIGGDVDDGWKVFDKMRVRNV 185
Query: 128 FTWTAMIVGLAISGHGDT-------------------------------ALDMFSQMLRA 156
+WT +I GL G DT A D+F +ML
Sbjct: 186 VSWTTVIAGLVACGKLDTAREVFERIPSKNVVSWTAMINGYVKNDNPIKAFDLFERMLID 245
Query: 157 SIRLDEVTYVGVLSACT 173
++R +E T V ++ ACT
Sbjct: 246 NVRPNEFTLVSLIKACT 262
>gi|147771061|emb|CAN60969.1| hypothetical protein VITISV_033859 [Vitis vinifera]
Length = 722
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 108/193 (55%), Gaps = 21/193 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M DV+SW+ +V ++ G++++ARQ F +MPERD V WT M+ GY + R
Sbjct: 399 AHQVFNEMVGADVVSWSGLVVAHVRAGELELARQVFDEMPERDVVSWTVMVSGYAQAKRS 458
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN--DIFVGI-------------------AL 102
REAL LFREM+ +R DE V +++ + D+ G AL
Sbjct: 459 REALELFREMRDVGVRPDEVAMVIVISACTSLGDLETGFEVHRYIDENGFGWMVSLCNAL 518
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG ++ A +VF M RK TW +MI A G+ + A +F+ ML + IR D
Sbjct: 519 IDMYAKCGCMDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLXSGIRPDG 578
Query: 163 VTYVGVLSACTHN 175
VT++ +L+A TH
Sbjct: 579 VTFLALLTAYTHK 591
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 84/208 (40%), Gaps = 45/208 (21%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP----ERDYVLWTAMIDG 56
+ +A +F + + + T++ GY + Q F QM + D +T ++ G
Sbjct: 291 LHYADRLFSQIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLLKG 350
Query: 57 YLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYC--------- 107
+R R L L + DE + F +FV ALI +Y
Sbjct: 351 R---SRMRIDLPLI-------VASDEIHGAVLKLGFCFHLFVMNALIHLYAARGVPAAAH 400
Query: 108 ----------------------KCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDT 145
+ G++E A++VF +M +D +WT M+ G A +
Sbjct: 401 QVFNEMVGADVVSWSGLVVAHVRAGELELARQVFDEMPERDVVSWTVMVSGYAQAKRSRE 460
Query: 146 ALDMFSQMLRASIRLDEVTYVGVLSACT 173
AL++F +M +R DEV V V+SACT
Sbjct: 461 ALELFREMRDVGVRPDEVAMVIVISACT 488
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 76/176 (43%), Gaps = 32/176 (18%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP----ERDYVLWTAMIDG 56
M A ++F NM+ K +I+W +++S N G + A + F M D V + A++
Sbjct: 528 MDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLXSGIRPDGVTFLALLTA 587
Query: 57 YLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGI----ALIDMYCKCGDV 112
Y + LF MQ RD + G+ ++DM + G +
Sbjct: 588 YTHKGWVDDGYGLFESMQ-----RD------------YGVEAGVEHYGCMVDMLGRAGRL 630
Query: 113 EKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL--DEVTY 165
E+A ++ M + + W A++ I +GD ++M ++L+ I L DE Y
Sbjct: 631 EEAYKLITSMSMPCNDVVWGALLAACRI--YGD--VEMGERVLKKLIELKPDEGGY 682
>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
Length = 594
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 109/193 (56%), Gaps = 21/193 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M +DV+SWT ++ GY + G + A F +MP+R+ V W+A+I GY+++ +
Sbjct: 221 ARRLFDEMPERDVVSWTIMLVGYADAGFLSEASCLFDEMPKRNLVSWSALIKGYIQIGCY 280
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
+AL LF+EMQ + ++ DE +L+ D + AL
Sbjct: 281 SKALELFKEMQVAKVKMDEVIVTTLLSACARLGALDQGRWLHMYIDKHGIKVDAHLSTAL 340
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG ++ A +VF + K F W++MI GLA+ G+ A+++F++M+ I E
Sbjct: 341 IDMYSKCGRIDMAWKVFQETGDKKVFVWSSMIGGLAMHSFGEKAIELFAKMIECGIEPSE 400
Query: 163 VTYVGVLSACTHN 175
+TY+ +L+ACTH+
Sbjct: 401 ITYINILAACTHS 413
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 19/159 (11%)
Query: 16 VISWTTIVSGYINRGQVDIA-RQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
V SW +++ Y G+V I R+ F ++ D V W +I+GY++ EA LF EM
Sbjct: 170 VHSWNSLLDFYGKVGEVGIVVRRVFDKIEGPDVVSWNCLINGYVKSGDLDEARRLFDEMP 229
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
D+ ++ Y G + +A +F +M +++ +W+A+I
Sbjct: 230 ------------------ERDVVSWTIMLVGYADAGFLSEASCLFDEMPKRNLVSWSALI 271
Query: 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
G G AL++F +M A +++DEV +LSAC
Sbjct: 272 KGYIQIGCYSKALELFKEMQVAKVKMDEVIVTTLLSACA 310
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 18/156 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFREMQTSNI 78
T ++ Y G++D+A + F + ++ +W++MI G L ++ F E A+ LF +M I
Sbjct: 338 TALIDMYSKCGRIDMAWKVFQETGDKKVFVWSSMIGG-LAMHSFGEKAIELFAKMIECGI 396
Query: 79 RRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLA 138
E T + IL + V + L ++F +M+ K G
Sbjct: 397 EPSEITYINILAACTHSGLVDVGL--------------QIFNRMVENQKPKPRMQHYGCI 442
Query: 139 ISGHGDTAL--DMFSQMLRASIRLDEVTYVGVLSAC 172
+ G L D F + ++ D + +LSAC
Sbjct: 443 VDLLGRAGLLHDAFRVVETMPVKADPAIWRALLSAC 478
>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
Length = 850
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 104/192 (54%), Gaps = 23/192 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F NM+ +DV+SWTTI+ GY + IAR F MP +D W +I GY + R +EA
Sbjct: 400 LFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEA 459
Query: 67 LTLFREMQ--TSNIRRDEFTTVRILTTFNN----DIF-----------------VGIALI 103
L +FRE+Q S R D+ T + L+ DI + +LI
Sbjct: 460 LAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLI 519
Query: 104 DMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEV 163
DMY K GDVEKA VF + KD F W+AMI GLA+ G G+ A+++F M ++ + V
Sbjct: 520 DMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSV 579
Query: 164 TYVGVLSACTHN 175
T+ +L AC+H+
Sbjct: 580 TFTNLLCACSHS 591
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 26/167 (15%)
Query: 32 VDIARQYFAQMPERDYVLWTAMIDGYL-RVNRFREALTLFREMQTSNIRRDEFT------ 84
+D AR+ F Q+P+ + W +I + + L R + S ++FT
Sbjct: 189 LDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIK 248
Query: 85 ---------------TVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR---KD 126
+ I T+F +D+FV +LI Y CG ++ A VF +M+ KD
Sbjct: 249 AVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVF-EMIEGNNKD 307
Query: 127 KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+W +M+ G G+ D ALD+F +M + + VT V V+SAC
Sbjct: 308 IVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACA 354
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 83/168 (49%), Gaps = 25/168 (14%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRVNRFREALTLFRE 72
DV +++ Y + G +D+A F + +D V W +M+ G+++ +AL LF
Sbjct: 274 DVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFER 333
Query: 73 MQTSNIRRDEFTTVRILT----TFN-------------NDIFVGI----ALIDMYCKCGD 111
M+ + + T V +++ T N N++ + + A IDM+ KCG+
Sbjct: 334 MRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGE 393
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLA-ISGHGDTALDMFSQMLRASI 158
VE A+ +F M ++D +WT +I G A +S HG A D+F M R I
Sbjct: 394 VEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHG-IARDIFDSMPRKDI 440
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 18/157 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE----RDYVLWTAMIDGYLR 59
A+E+F ++ NKDV W+ +++G G+ + A + F M E + V +T ++
Sbjct: 531 AIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSH 590
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119
E LF EM+ + V ++ ++D+ + G +E+A +
Sbjct: 591 SGLVDEGKRLFDEMERV------YGVVPKTKHYS-------CMVDVLGRAGHLEEALKFI 637
Query: 120 WKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155
M L W A++ I G+ + A S++L
Sbjct: 638 EGMPLAPSASVWGALLGACCIHGNLELAEKACSRLLE 674
>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 112/195 (57%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
MG A+ +F M +D ++W +++ RG +D A +F +MP ++ WT+MI G+++
Sbjct: 61 MGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQC 120
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVG 99
+ EA+ LF +++ +R +E T V +L + F ++ V
Sbjct: 121 GKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVC 180
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
LIDMY KCG +E A+RVF++M + +W+AMI GLA+ G + AL +FS+M++ ++
Sbjct: 181 NTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVK 240
Query: 160 LDEVTYVGVLSACTH 174
+ VT++G+L AC+H
Sbjct: 241 PNGVTFIGLLHACSH 255
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 31/113 (27%)
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT---------------------- 129
F +++F+ ++++Y CG++ A +F KM ++D T
Sbjct: 41 FGSNLFLQNMILNLYGLCGEMGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFL 100
Query: 130 ---------WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
WT+MI G G + A+D+F ++ ++R +EVT V VL+AC
Sbjct: 101 RMPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACA 153
>gi|297824259|ref|XP_002880012.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325851|gb|EFH56271.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 542
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 108/193 (55%), Gaps = 21/193 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M DV++W +I+ G G +D A++ F +MP+R+ V W +MI G++R RF
Sbjct: 180 AWRLFVGMMGFDVVAWNSIIMGLAKCGLIDQAQKLFDEMPQRNGVSWNSMISGFVRNGRF 239
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
++AL +FREMQ +++ D FT V +L F + V AL
Sbjct: 240 KDALEMFREMQERDVKPDGFTMVSLLNACAYLGASEQGRWIHKYIVRNRFELNSIVITAL 299
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMYCKCG E+ +VF K W +MI+GLA +G + A+D+F ++ R + D
Sbjct: 300 IDMYCKCGCFEEGLKVFECAPTKQLSCWNSMILGLANNGCEERAMDLFLELERTGLEPDS 359
Query: 163 VTYVGVLSACTHN 175
V+++GVL+AC H+
Sbjct: 360 VSFIGVLTACAHS 372
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 69/154 (44%), Gaps = 14/154 (9%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
+A +F + +K+ W TI+ G+ +R F PE ++ M+ V
Sbjct: 76 YAYLVFTRINHKNPFVWNTIIRGF--------SRSSF---PEMAISIFIDMLCSSPSVKP 124
Query: 63 FREAL-TLFREMQTSNIRRD--EFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119
R ++F+ + + RD + I +D F+ ++ MY CG + +A R+F
Sbjct: 125 QRLTYPSVFKAYASLGLARDGRQLHGRVIKEGLEDDSFIRNTMLHMYVTCGCLVEAWRLF 184
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
M+ D W ++I+GLA G D A +F +M
Sbjct: 185 VGMMGFDVVAWNSIIMGLAKCGLIDQAQKLFDEM 218
>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 623
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 110/189 (58%), Gaps = 21/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
IF M DV+SWT+++ G+ G V+ AR+ F QMPE++ V W+ MI GY + N F +A
Sbjct: 176 IFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKA 235
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDM 105
+ LF+ +Q+ +R +E V ++++ + ++ +G AL+DM
Sbjct: 236 VELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDM 295
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y +CG ++KA VF + +D +WTA+I GLA+ G+ + +L F+ M+ A + ++T+
Sbjct: 296 YARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITF 355
Query: 166 VGVLSACTH 174
VLSAC+H
Sbjct: 356 TAVLSACSH 364
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 75/195 (38%), Gaps = 52/195 (26%)
Query: 32 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT 91
+D A + F+Q+ + ++ AMI G+ +A + + Q + D T ++ +
Sbjct: 69 IDYASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKS 128
Query: 92 ---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTW 130
F D++V +L+ MY GD E A +F +M D +W
Sbjct: 129 CTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSW 188
Query: 131 TAMIVGL--------------------------AISG-----HGDTALDMFSQMLRASIR 159
T+MI G ISG H D A+++F + +R
Sbjct: 189 TSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVR 248
Query: 160 LDEVTYVGVLSACTH 174
+E V V+S+C H
Sbjct: 249 ANETVMVSVISSCAH 263
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 20/137 (14%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE-----RDYVLWTAMIDGYL 58
A+ +F ++ +D +SWT +++G G + + +YFA M E RD + +TA++
Sbjct: 305 AVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRD-ITFTAVLSACS 363
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
+F M +RD R L + ++D+ + G +E+A+R
Sbjct: 364 HGGLVERGFQIFESM-----KRDHRVEPR-LEHYG-------CMVDLLGRAGKLEEAERF 410
Query: 119 FWKM-LRKDKFTWTAMI 134
KM ++ + W A++
Sbjct: 411 VLKMPVKPNAPVWGALL 427
>gi|449492842|ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05750, chloroplastic-like [Cucumis sativus]
Length = 525
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 112/195 (57%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A ++F N+ K+ +SW T+++G++ G++++A Q F +MP RD + WTA+I+G L+
Sbjct: 146 LGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKH 205
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
+AL F +MQ S + D + + +L F ++I +
Sbjct: 206 GYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLGLWVHRFVMPQEFKDNIKIS 265
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
+LIDMY +CG +E A++VF KM ++ +W ++IVG A++G D +L+ F M + +
Sbjct: 266 NSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFXAMQKEGFK 325
Query: 160 LDEVTYVGVLSACTH 174
D V+Y G L+AC+H
Sbjct: 326 PDGVSYTGALTACSH 340
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 76/181 (41%), Gaps = 55/181 (30%)
Query: 48 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT---FNNDIF------- 97
VLWT+ + Y R + EA F M+ + + + T + +L+ F ++ F
Sbjct: 58 VLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLH 117
Query: 98 --------------VGIALIDMYCKCGDVEKAQRVFW----------------------- 120
VG ALIDMY KC + A++VF+
Sbjct: 118 GYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEI 177
Query: 121 --------KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+M +D +WTA+I GL G+ + AL+ F QM R+ + D V+ + VL+AC
Sbjct: 178 ELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAAC 237
Query: 173 T 173
Sbjct: 238 A 238
>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Vitis vinifera]
Length = 731
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 109/195 (55%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A ++F + K V+SWT +++G I +++ AR F RD ++WTAM+ Y +
Sbjct: 278 LGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQA 337
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
N +A LF +M+TS +R + T V +L+ D +
Sbjct: 338 NCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILN 397
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+DMY KCGD+ A R+F + + +D W A+I G A+ G+G+ ALD+F++M R ++
Sbjct: 398 TALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVK 457
Query: 160 LDEVTYVGVLSACTH 174
+++T++G+L AC+H
Sbjct: 458 PNDITFIGLLHACSH 472
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 89/214 (41%), Gaps = 54/214 (25%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
++DV ++ Y V+ AR F +M ERD V W+ MI R F AL L RE
Sbjct: 156 DRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIRE 215
Query: 73 MQTSNIRRDEFTTVRILTTF-------------------NNDIFVGI----ALIDMYCKC 109
M +R E V ++ F +N+ +G+ AL+DMY KC
Sbjct: 216 MNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKC 275
Query: 110 GDVEKAQRVFWKMLRKDKFTWTAMIVGL--------------------------AISGHG 143
G + A+++F + +K +WTAMI G +S +
Sbjct: 276 GHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYA 335
Query: 144 -----DTALDMFSQMLRASIRLDEVTYVGVLSAC 172
D A ++F QM + +R +VT V +LS C
Sbjct: 336 QANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLC 369
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 28/162 (17%)
Query: 37 QYFAQMPERDY-------VLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
+ Q+P D+ W +I Y + N+ R AL ++ +++ + D F +L
Sbjct: 72 HHALQIPLNDFPSGLSPSAQWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVL 131
Query: 90 TT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
+ D+FVG AL+ MY +C VE A+ VF KM+ +D
Sbjct: 132 KACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVV 191
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLS 170
+W+ MI L+ + D AL++ +M +R EV V +++
Sbjct: 192 SWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVN 233
>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 105/192 (54%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M K++ SW +++G G + AR+ F +M ERD + W++M+DGY+ R+
Sbjct: 216 AKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRY 275
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
+EAL +F++MQ R F +L +N D +G AL
Sbjct: 276 KEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTAL 335
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY KCG ++ VF +M ++ FTW AMI GLAI G + AL++FS++ ++ +
Sbjct: 336 LDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNG 395
Query: 163 VTYVGVLSACTH 174
+T VGVL+AC H
Sbjct: 396 ITLVGVLTACAH 407
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 19/149 (12%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT 85
Y + G+++ AR+ F E D V W MIDGYL+ A LF +M NI
Sbjct: 177 YASFGRLEDARKMFYS-GESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNI------- 228
Query: 86 VRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDT 145
++N +I+ K G++ A+++F +M +D+ +W++M+ G +G
Sbjct: 229 ----GSWN-------VMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKE 277
Query: 146 ALDMFSQMLRASIRLDEVTYVGVLSACTH 174
AL++F QM R R VL+AC++
Sbjct: 278 ALEIFQQMQREETRPGRFILSSVLAACSN 306
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 66/155 (42%), Gaps = 23/155 (14%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D + T ++ Y G++D+ + F +M ER+ W AMI G R +AL LF ++Q
Sbjct: 328 DAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQ 387
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIAL----------------------IDMYCKCGDV 112
++ + T V +LT + FV L +D+ + G
Sbjct: 388 EGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLF 447
Query: 113 EKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTA 146
+A+ + M ++ + W A++ I G+ D A
Sbjct: 448 SEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLA 482
>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 103/171 (60%), Gaps = 3/171 (1%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M ++V+S T++VSGY V AR F++M +R+ V W A+I GY +
Sbjct: 303 ARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGEN 362
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
EAL LFR ++ +I +T +L + DIFVG +LIDMY KCG +E RVF KM
Sbjct: 363 EEALRLFRLLKRESIWPTHYTFGNLLKS---DIFVGNSLIDMYMKCGSIEDGSRVFEKMK 419
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+D +W A+IVG A +G+G AL +F +ML + D VT +GVL AC+H
Sbjct: 420 ERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSH 470
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 98/191 (51%), Gaps = 21/191 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M ++ +W +++S G +D A + F MPE D W +M+ G+ + +RF
Sbjct: 69 ARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRF 128
Query: 64 REALTLFREMQTSNIRRDEF------------------TTVRILTT---FNNDIFVGIAL 102
E+L F +M + +E+ T V L + ++ D+++G AL
Sbjct: 129 EESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSAL 188
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG V A+ VF M+ ++ TW ++I +G AL++F +M+ + + DE
Sbjct: 189 IDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDE 248
Query: 163 VTYVGVLSACT 173
VT V+SAC
Sbjct: 249 VTLASVVSACA 259
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 87/183 (47%), Gaps = 26/183 (14%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV + ++ Y G V A + F+ M ER+ V W ++I Y + EAL +F M
Sbjct: 181 DVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMM 240
Query: 75 TSNIRRDEFTTVRILTT----------------------FNNDIFVGIALIDMYCKCGDV 112
S + DE T +++ F +D+ +G AL+DMY KC V
Sbjct: 241 DSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKV 300
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+A+RVF +M ++ + T+M+ G A + A MFS+M + ++ V++ +++
Sbjct: 301 NEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNV----VSWNALIAGY 356
Query: 173 THN 175
T N
Sbjct: 357 TQN 359
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 73 MQTSNIRRDEFTTVRIL-TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWT 131
+++ + R RIL T F+ +IF+ LID+Y KC ++ A+++F +M +++ FTW
Sbjct: 26 LRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWN 85
Query: 132 AMIVGLAISGHGDTALDMFSQM 153
++I L SG D A +F M
Sbjct: 86 SLISVLTKSGFLDEAARLFGSM 107
>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
Length = 541
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 71/180 (39%), Positives = 103/180 (57%), Gaps = 25/180 (13%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ---TS 76
T+++S Y + G VD+AR FA MPER+ + W+ MI+GY+R +++EAL LFREMQ +
Sbjct: 103 TSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVN 162
Query: 77 NIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVEKA 115
++R +EFT +L D+ +G ALIDMY KCG VEKA
Sbjct: 163 DVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKA 222
Query: 116 QRVFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
VF + KD W+AMI GLA+ G + + +FS+M+ +R + VT++ V AC H
Sbjct: 223 TWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVH 282
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS--Q 152
D FV +LI MY G V+ A+ +F M ++ +W+ MI G G AL +F Q
Sbjct: 98 DPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQ 157
Query: 153 MLRAS-IRLDEVTYVGVLSAC 172
ML + +R +E T GVL+AC
Sbjct: 158 MLGVNDVRPNEFTMSGVLAAC 178
>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 808
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 73/192 (38%), Positives = 106/192 (55%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F N D ISW +++SG + G V+ AR F MPE+D V W+A+I GY + + F
Sbjct: 358 AQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCF 417
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
E L LF EMQ IR DE V +++ + ++ +G L
Sbjct: 418 SETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTL 477
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY KCG VE A VF M K +W A+I+GLA++G + +LDMFS+M + +E
Sbjct: 478 LDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNE 537
Query: 163 VTYVGVLSACTH 174
+T++GVL AC H
Sbjct: 538 ITFMGVLGACRH 549
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 72/254 (28%), Positives = 102/254 (40%), Gaps = 83/254 (32%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER------------------ 45
A ++F D +SW +I++GY+ +G V+ A+ F QMP+R
Sbjct: 195 ARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQV 254
Query: 46 -------------DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTF 92
D V W+A+I GY + + EAL +F EM + +R DE V +L+
Sbjct: 255 MEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSAC 314
Query: 93 NN-------------DIFVGI--------ALIDMYC------------------------ 107
+ I +GI ALI MY
Sbjct: 315 AHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWN 374
Query: 108 -------KCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
KCG VEKA+ +F M KD +W+A+I G A L +F +M IR
Sbjct: 375 SMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRP 434
Query: 161 DEVTYVGVLSACTH 174
DE V V+SACTH
Sbjct: 435 DETILVSVISACTH 448
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 51/162 (31%), Positives = 79/162 (48%), Gaps = 18/162 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ DV T+++ Y G + AR+ F + P D V W +++ GY++ EA +F +
Sbjct: 173 DSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQ 232
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA 132
M NI ++I + K G V +A ++F +M KD +W+A
Sbjct: 233 MPQRNIVASN------------------SMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSA 274
Query: 133 MIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+I G +G + AL MF +M +RLDEV V VLSAC H
Sbjct: 275 LISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAH 316
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/148 (25%), Positives = 72/148 (48%), Gaps = 21/148 (14%)
Query: 32 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFT------- 84
+D + Q F ++ + +W M+ Y++ N +AL L++ M +N+ D +T
Sbjct: 91 LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQA 150
Query: 85 -TVRIL-------------TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTW 130
VR+L F++D++V LI+MY CG++ A+++F + D +W
Sbjct: 151 CAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSW 210
Query: 131 TAMIVGLAISGHGDTALDMFSQMLRASI 158
+++ G G + A +F QM + +I
Sbjct: 211 NSILAGYVKKGDVEEAKLIFDQMPQRNI 238
>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 105/192 (54%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M K++ SW +++G G + AR+ F +M ERD + W++M+DGY+ R+
Sbjct: 216 AKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRY 275
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
+EAL +F++MQ R F +L +N D +G AL
Sbjct: 276 KEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTAL 335
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY KCG ++ VF +M ++ FTW AMI GLAI G + AL++FS++ ++ +
Sbjct: 336 LDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNG 395
Query: 163 VTYVGVLSACTH 174
+T VGVL+AC H
Sbjct: 396 ITLVGVLTACAH 407
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 19/149 (12%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT 85
Y + G+++ AR+ F E D V W MIDGYL+ A LF +M NI
Sbjct: 177 YASFGRLEDARKMFYS-GESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNI------- 228
Query: 86 VRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDT 145
++N +I+ K G++ A+++F +M +D+ +W++M+ G +G
Sbjct: 229 ----GSWN-------VMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKE 277
Query: 146 ALDMFSQMLRASIRLDEVTYVGVLSACTH 174
AL++F QM R R VL+AC++
Sbjct: 278 ALEIFQQMQREETRPGRFILSSVLAACSN 306
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 66/155 (42%), Gaps = 23/155 (14%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D + T ++ Y G++D+ + F +M ER+ W AMI G R +AL LF ++Q
Sbjct: 328 DAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQ 387
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIAL----------------------IDMYCKCGDV 112
++ + T V +LT + FV L +D+ + G
Sbjct: 388 EGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLF 447
Query: 113 EKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTA 146
+A+ + M ++ + W A++ I G+ D A
Sbjct: 448 SEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLA 482
>gi|225445484|ref|XP_002282063.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 533
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 105/195 (53%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
MG A +F + N+DV+ WT ++ GY G V+ AR F MPER+ + W+A++ Y RV
Sbjct: 165 MGTARTLFDRIPNRDVVLWTAMIDGYGKMGDVEHARILFEDMPERNAISWSAVMAAYSRV 224
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
F+E L LFR MQ + +E V +LT F+++ +
Sbjct: 225 GDFKEVLCLFRRMQEAGTMPNESVLVSVLTACAHLGALAQGLWVHSYAKQCNFDSNPILA 284
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+DMY KCG VE A F + KD W AMI G+A++G +L++F++M+ +
Sbjct: 285 TALVDMYSKCGCVESALSTFQGIPNKDAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQ 344
Query: 160 LDEVTYVGVLSACTH 174
E T+V VL+ACTH
Sbjct: 345 PTETTFVAVLTACTH 359
Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 78/205 (38%), Gaps = 45/205 (21%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR- 62
A IF N+ +++ + +++ GY+ + P R + + M++ L N
Sbjct: 65 ACLIFQNLSLRNIFMYNSMIRGYV-----------LSHSPTRAILCYLDMLNYGLLANNY 113
Query: 63 -FREALTLFREMQTSNIRRDEFTTVRILT-TFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
F + + +S+ ++T F+ D FV ALI+ Y D+ A+ +F
Sbjct: 114 TFPPLIKACTTLGSSSKLIGCLVHAHVVTFGFDEDPFVVSALIEFYSLNFDMGTARTLFD 173
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTA-------------------------------LDM 149
++ +D WTAMI G G + A L +
Sbjct: 174 RIPNRDVVLWTAMIDGYGKMGDVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCL 233
Query: 150 FSQMLRASIRLDEVTYVGVLSACTH 174
F +M A +E V VL+AC H
Sbjct: 234 FRRMQEAGTMPNESVLVSVLTACAH 258
>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
Length = 538
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 104/193 (53%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F M NKDV+SW T+++GY + G V + F +MPER+ W A+I GY R F
Sbjct: 167 ARELFDKMPNKDVMSWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCF 226
Query: 64 REALTLFREMQT-SNIRRDEFTTVRILTT---------------------FNNDIFVGIA 101
E L+ F+ M + ++ T V +L+ + +++V A
Sbjct: 227 SEVLSAFKRMLVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNA 286
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+DMY KCG VE A VF M KD +W +I GLA+ GHG AL++FS M A D
Sbjct: 287 LMDMYAKCGVVETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPD 346
Query: 162 EVTYVGVLSACTH 174
+T++G+L ACTH
Sbjct: 347 GITFIGILCACTH 359
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 83/171 (48%), Gaps = 19/171 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +FG M ++VI+WT +++GYI + AR+ F PERD VLW MI GY+
Sbjct: 105 AYRVFGEMIERNVIAWTAMINGYITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDV 164
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
A LF +M N D+ +++ Y GDV +R+F +M
Sbjct: 165 IRARELFDKMP------------------NKDVMSWNTVLNGYASNGDVMACERLFEEMP 206
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQML-RASIRLDEVTYVGVLSACT 173
++ F+W A+I G +G L F +ML ++ ++ T V VLSAC
Sbjct: 207 ERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACA 257
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 21/123 (17%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT--- 91
A + F Q+PE + +W AM GY + ++ + LFR+M+ ++ + FT IL +
Sbjct: 4 AHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSCVK 63
Query: 92 ------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
F + FV LIDMY G + A RVF +M+ ++ WTAM
Sbjct: 64 INALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAWTAM 123
Query: 134 IVG 136
I G
Sbjct: 124 ING 126
>gi|347954500|gb|AEP33750.1| chloroplast biogenesis 19, partial [Lepidium sativum]
Length = 494
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 106/189 (56%), Gaps = 21/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M++K+ ++W T++ GY+ GQVD A + F +MPERD + WTAMI G+++ EA
Sbjct: 128 VFDYMEDKNSVTWNTMIDGYMRNGQVDNAVKVFDEMPERDLISWTAMITGFVKKGFHEEA 187
Query: 67 LTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDM 105
L FREMQ S + D + L F N++ V +LID+
Sbjct: 188 LAWFREMQISGVNPDYVAIIAALAACTNLGALSFGLWAHRYVVSQDFRNNVRVSNSLIDL 247
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
YC+CG VE A++VF M ++ +W ++IVG A +G+ + +L F +M + D VT+
Sbjct: 248 YCRCGCVEFARQVFDTMEKRTVVSWNSVIVGFAANGNANESLVYFRKMQEEGFKPDAVTF 307
Query: 166 VGVLSACTH 174
G L+AC+H
Sbjct: 308 TGALTACSH 316
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 74/201 (36%), Gaps = 55/201 (27%)
Query: 29 RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRI 88
+ V+ Q Q V WT+ I R +R EA F +M+ + I + T + +
Sbjct: 15 KNNVNPKIQKLNQSTSETIVSWTSRITLLSRDDRLAEAAREFSDMRLAGIEPNHITFISL 74
Query: 89 LTTFNN------------------------DIFVGIALIDMYCKCGDVEKAQ-------- 116
L+ N + VG A++ MY K G V KA+
Sbjct: 75 LSACGNFPSGSEALSDLLHGYACKLGLDRSHVMVGTAILGMYSKRGHVRKARLVFDYMED 134
Query: 117 -----------------------RVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+VF +M +D +WTAMI G G + AL F +M
Sbjct: 135 KNSVTWNTMIDGYMRNGQVDNAVKVFDEMPERDLISWTAMITGFVKKGFHEEALAWFREM 194
Query: 154 LRASIRLDEVTYVGVLSACTH 174
+ + D V + L+ACT+
Sbjct: 195 QISGVNPDYVAIIAALAACTN 215
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 17/127 (13%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYL 58
FA ++F M+ + V+SW +++ G+ G + + YF +M E D V +T +
Sbjct: 256 FARQVFDTMEKRTVVSWNSVIVGFAANGNANESLVYFRKMQEEGFKPDAVTFTGALTACS 315
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
V E F+ M+T D + RI F L+D+Y + G +E A +V
Sbjct: 316 HVGLVEEGFQYFQMMKT-----DYRISPRI-EHFG-------CLVDLYSRAGRLEDAIKV 362
Query: 119 FWKMLRK 125
M K
Sbjct: 363 VESMPMK 369
>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
Length = 654
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 108/192 (56%), Gaps = 23/192 (11%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE 65
++F M N+DVISWT ++S Y+ G ++ A + F +P +D V WT M+ G+ + + RE
Sbjct: 203 KVFDEMPNRDVISWTELISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPRE 262
Query: 66 ALTLFREMQTSNIRRDEFTTVRILTTF-----------------------NNDIFVGIAL 102
A+ F +MQ + DE T + +++ + + VG AL
Sbjct: 263 AIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSAL 322
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG V A RVF M ++ +++++MI+G A+ G A+ +F +M++ I+ +
Sbjct: 323 IDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNR 382
Query: 163 VTYVGVLSACTH 174
VT++GVL+AC+H
Sbjct: 383 VTFIGVLTACSH 394
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 75/189 (39%), Gaps = 53/189 (28%)
Query: 39 FAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT------- 91
F Q+ + L+ A+I GYL R +E+ + M+ + FT +
Sbjct: 103 FNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDV 162
Query: 92 ---------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVG 136
F D+ VG ++IDMY KCG +E ++VF +M +D +WT +I
Sbjct: 163 GLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISA 222
Query: 137 LAISGHGDTALDM-------------------------------FSQMLRASIRLDEVTY 165
SG+ ++A ++ F +M + DE+T
Sbjct: 223 YVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITL 282
Query: 166 VGVLSACTH 174
+GV+SAC
Sbjct: 283 IGVISACAQ 291
>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 67/192 (34%), Positives = 105/192 (54%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M +D +SW T++SG++ GQ+ AR F +M ++ WTA++ GY R+ +
Sbjct: 171 AHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCY 230
Query: 64 REALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIAL 102
+AL FR MQ I DE + V +L F +I V AL
Sbjct: 231 ADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNAL 290
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I+MY KCG +++ +R+F +M +D +W+ MIVGLA G A+++F +M +A I
Sbjct: 291 IEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSI 350
Query: 163 VTYVGVLSACTH 174
+T+VG+L+AC H
Sbjct: 351 ITFVGLLTACAH 362
Score = 50.1 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 45/202 (22%), Positives = 78/202 (38%), Gaps = 57/202 (28%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-----QTSNIRRDEFT 84
G+ + A F + + + L+ AMI Y + A+T++++M + I D+FT
Sbjct: 60 GETEYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFT 119
Query: 85 TVRILTTF---------------------NNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
++ + ++ V +L++MY KC ++ A RVF +M
Sbjct: 120 FPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMT 179
Query: 124 RKDK-------------------------------FTWTAMIVGLAISGHGDTALDMFSQ 152
+D F+WTA++ G A G AL+ F +
Sbjct: 180 ERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRR 239
Query: 153 MLRASIRLDEVTYVGVLSACTH 174
M I DE++ V VL C
Sbjct: 240 MQMVGIEPDEISLVSVLPDCAQ 261
>gi|255540005|ref|XP_002511067.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550182|gb|EEF51669.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 318
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 111/182 (60%), Gaps = 22/182 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DVI + ++ Y Q+D AR+ F ++P R+ V WT++I GY R+N ++E L LFRE+Q
Sbjct: 79 DVILGSCLIDMYAKCAQMDNAREVFDKIPVRNLVCWTSLIVGYARLNMYKEGLELFRELQ 138
Query: 75 TSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVE 113
+ + D +++ + ++ V ALIDMY KCGD+E
Sbjct: 139 IAGVIADAALVACVVSACGHMGALAQGRWVHTYCERNGIDMNLSVRNALIDMYSKCGDIE 198
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS-IRLDEVTYVGVLSAC 172
KA ++F M++KD F+WTAMI G A++G+ D AL++F+Q+ + ++ +EVT++GVLSAC
Sbjct: 199 KAHQIFNGMVKKDLFSWTAMISGFAMNGYSDEALELFAQVETCNDVKPNEVTFLGVLSAC 258
Query: 173 TH 174
+H
Sbjct: 259 SH 260
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 73/152 (48%), Gaps = 22/152 (14%)
Query: 45 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSN-IRRDEFTTVRILTT------------ 91
RD V W +MI GYL+ R +AL +F E+ N +R DE T V LT
Sbjct: 7 RDVVSWNSMISGYLQCERNGDALKVFGELLNDNFVRFDEVTLVNALTACGRTGFVNLGKK 66
Query: 92 ---------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGH 142
F D+ +G LIDMY KC ++ A+ VF K+ ++ WT++IVG A
Sbjct: 67 IHALIVVNGFVLDVILGSCLIDMYAKCAQMDNAREVFDKIPVRNLVCWTSLIVGYARLNM 126
Query: 143 GDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
L++F ++ A + D V+SAC H
Sbjct: 127 YKEGLELFRELQIAGVIADAALVACVVSACGH 158
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQM 42
A +IF M KD+ SWT ++SG+ G D A + FAQ+
Sbjct: 200 AHQIFNGMVKKDLFSWTAMISGFAMNGYSDEALELFAQV 238
>gi|347954494|gb|AEP33747.1| chloroplast biogenesis 19, partial [Brassica oleracea]
Length = 485
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 108/189 (57%), Gaps = 21/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F +++K+ ++W T++ GY+ G+VD A + F +MPERD + WTAMI+G+++ EA
Sbjct: 120 VFDRVEDKNSVTWNTMIDGYMRSGRVDDAAKVFDEMPERDLISWTAMINGFVKKGLHEEA 179
Query: 67 LTLFREMQTSNIRRDEFTTVR---------------------ILTTFNNDIFVGIALIDM 105
L FREMQ S ++ D + + F N++ V +LID+
Sbjct: 180 LAWFREMQVSGVKPDYVAVIAALAACANLGALSFGLWVHRFVVSQDFKNNVRVSNSLIDL 239
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
YC+CG VE A++VF +M ++ +W ++IVG A +GH +L F +M + D VT+
Sbjct: 240 YCRCGCVEFARQVFDEMEKRTVVSWNSVIVGFAANGHAHESLVYFRRMQEERFKPDAVTF 299
Query: 166 VGVLSACTH 174
G L+AC+H
Sbjct: 300 TGALTACSH 308
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 20/137 (14%)
Query: 37 QYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTF---- 92
Q Q V WT+ I R R EA F M+ + + + T + +L+
Sbjct: 19 QKLNQSTSETTVSWTSRITLLSRNGRLAEAAKEFTAMRLAGVEPNHITLIALLSGCADCE 78
Query: 93 ----------------NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVG 136
N + VG A++ MY K KA+ VF ++ K+ TW MI G
Sbjct: 79 PFGDSLHGYACKLGLDRNQVMVGTAILGMYSKRRRFRKARLVFDRVEDKNSVTWNTMIDG 138
Query: 137 LAISGHGDTALDMFSQM 153
SG D A +F +M
Sbjct: 139 YMRSGRVDDAAKVFDEM 155
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 22/169 (13%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYL 58
FA ++F M+ + V+SW +++ G+ G + YF +M E D V +T +
Sbjct: 248 FARQVFDEMEKRTVVSWNSVIVGFAANGHAHESLVYFRRMQEERFKPDAVTFTGALTACS 307
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
V E + F M +RD + RI L+D+Y + G +E+A +V
Sbjct: 308 HVGLVEEGVRYFEAM-----KRDYRISPRIEHYG--------CLVDLYSRAGRLEEALKV 354
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVG 167
M K ++ A HG+ ++ +M++ RL E+ G
Sbjct: 355 VESMPMKPNEVVIGSLLA-ACRTHGNDT-ELAERMMK---RLSELKVKG 398
>gi|125539857|gb|EAY86252.1| hypothetical protein OsI_07623 [Oryza sativa Indica Group]
Length = 629
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 71/184 (38%), Positives = 101/184 (54%), Gaps = 24/184 (13%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV+SW T+VSGY G + AR+ FA+MPER+ V W+AM+D +R F EAL +F M
Sbjct: 144 DVVSWNTMVSGYGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMM 203
Query: 75 TSNIRRDEFTTVRILTTF------------------------NNDIFVGIALIDMYCKCG 110
R D V +L ++ + AL+DMYCKCG
Sbjct: 204 REEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCG 263
Query: 111 DVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLS 170
+E A +VF + R+D W AMI GLA++G+G+ AL++F +ML+ +E T++ VL
Sbjct: 264 CMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLC 323
Query: 171 ACTH 174
ACTH
Sbjct: 324 ACTH 327
>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Glycine max]
Length = 616
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 63/188 (33%), Positives = 108/188 (57%), Gaps = 21/188 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F D+++ T +++ G +D AR+ F +MPERD+V W AMI GY + R REA
Sbjct: 169 VFDGAVEPDLVTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREA 228
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDM 105
L +F MQ ++ +E + V +L+ + + +G AL+DM
Sbjct: 229 LDVFHLMQMEGVKLNEVSMVLVLSACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVDM 288
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y KCG+V++A +VFW M ++ +TW++ I GLA++G G+ +LD+F+ M R ++ + +T+
Sbjct: 289 YAKCGNVDRAMQVFWGMKERNVYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGITF 348
Query: 166 VGVLSACT 173
+ VL C+
Sbjct: 349 ISVLKGCS 356
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 34/80 (42%), Positives = 50/80 (62%)
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML 154
D+ A+++ KCGD++ A+++F +M +D TW AMI G A G ALD+F M
Sbjct: 177 DLVTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQ 236
Query: 155 RASIRLDEVTYVGVLSACTH 174
++L+EV+ V VLSACTH
Sbjct: 237 MEGVKLNEVSMVLVLSACTH 256
>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Glycine max]
Length = 518
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 107/196 (54%), Gaps = 22/196 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ A ++F M +D++SW +++ Y G+++ AR+ F + P +D V W A+I GY+
Sbjct: 189 LSVARKLFDEMPKRDLVSWNVMITVYTKHGEMESARRLFDEAPMKDIVSWNALIGGYVLR 248
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN----------------------DIFV 98
N REAL LF EM DE T + +L+ + +
Sbjct: 249 NLNREALELFDEMCGVGECPDEVTMLSLLSACADLGDLESGEKVHAKIIEMNKGKLSTLL 308
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
G AL+DMY KCG++ KA RVFW + KD +W ++I GLA GH + +L +F +M +
Sbjct: 309 GNALVDMYAKCGNIGKAVRVFWLIRDKDVVSWNSVISGLAFHGHAEESLGLFREMKMTKV 368
Query: 159 RLDEVTYVGVLSACTH 174
DEVT+VGVL+AC+H
Sbjct: 369 CPDEVTFVGVLAACSH 384
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 18/159 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
+V+ T++ + G + +A F + D V W+A+I GY + A LF EM
Sbjct: 141 NVVVRNTLLVFHAKCGDLKVATDIFDDSDKGDVVAWSALIAGYAQRGDLSVARKLFDEMP 200
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
+RD L ++N +I +Y K G++E A+R+F + KD +W A+I
Sbjct: 201 ----KRD-------LVSWN-------VMITVYTKHGEMESARRLFDEAPMKDIVSWNALI 242
Query: 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
G + AL++F +M DEVT + +LSAC
Sbjct: 243 GGYVLRNLNREALELFDEMCGVGECPDEVTMLSLLSACA 281
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 21/142 (14%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT--- 91
A Q FAQ+P+ D +W I G + + A+ L+ +M +++ D FT +L
Sbjct: 60 ALQMFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMDQRSVKPDNFTFPFVLKACTK 119
Query: 92 ------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
F +++ V L+ + KCGD++ A +F + D W+A+
Sbjct: 120 LFWVNTGSAVHGRVLRLGFGSNVVVRNTLLVFHAKCGDLKVATDIFDDSDKGDVVAWSAL 179
Query: 134 IVGLAISGHGDTALDMFSQMLR 155
I G A G A +F +M +
Sbjct: 180 IAGYAQRGDLSVARKLFDEMPK 201
>gi|357141789|ref|XP_003572348.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Brachypodium distachyon]
Length = 555
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 70/196 (35%), Positives = 113/196 (57%), Gaps = 24/196 (12%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A ++F M ++++SW T+V GY G+++ AR+ F +MPE+D V WT MI GY +
Sbjct: 228 LARKMFDEMPVRNLVSWNTMVRGYAVNGEMNDARELFDRMPEKDVVSWTCMISGYAQARC 287
Query: 63 FREALTLFREMQT-SNIRRDEFTTVRILTT-----------------------FNNDIFV 98
+ E L LFR MQ+ SN+ +E T V +L+ +++ +
Sbjct: 288 YTETLELFRAMQSESNVLPNEVTMVSVLSACAHLTALEEGRWAHAFIDKHKMVLDSEFNL 347
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
G ALIDMY KCG + A ++F + +K+ W A+I GLA++G +++D+F QM R+
Sbjct: 348 GAALIDMYSKCGRTDLAVKIFHSLDQKNVSAWNALITGLAVNGDVRSSIDVFEQMRRSGE 407
Query: 159 RLDEVTYVGVLSACTH 174
+ + +T+VGVL+AC H
Sbjct: 408 KPNGITFVGVLTACAH 423
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 21/177 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYL 58
+G A +F M ++ +SW+ +V Y G++D+AR+ F +MP R+ V W +MI G+
Sbjct: 162 IGEARRVFEQMPQRNGVSWSAMVGAYAGAGELDVAREMFDEMPAIGRNVVSWNSMITGFA 221
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
R A +F EM VR L ++N ++ Y G++ A+ +
Sbjct: 222 RHGLLPLARKMFDEM-----------PVRNLVSWN-------TMVRGYAVNGEMNDAREL 263
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL-DEVTYVGVLSACTH 174
F +M KD +WT MI G A + L++F M S L +EVT V VLSAC H
Sbjct: 264 FDRMPEKDVVSWTCMISGYAQARCYTETLELFRAMQSESNVLPNEVTMVSVLSACAH 320
>gi|356544269|ref|XP_003540576.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 522
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 108/196 (55%), Gaps = 25/196 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDY--VLWTAMIDGYLRVN 61
A +F K+V WT++V+GY N G V+ AR F +PER+ V ++AM+ GY++
Sbjct: 149 ARRLFDQSPYKNVACWTSLVTGYCNNGLVNDARNLFDAIPERERNDVSYSAMVSGYVKNG 208
Query: 62 RFREALTLFREMQTSNIRRDEFTTVRILTTFNN-----------------------DIFV 98
FRE + LFRE++ N++ + +L+ + ++ +
Sbjct: 209 CFREGIQLFRELKDRNVKPNNSLLASVLSACASVGAFEEGKWIHAYVDQNKSQCYYELEL 268
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
G ALID Y KCG VE AQRVF M KD W+AM++GLAI+ AL++F +M +
Sbjct: 269 GTALIDFYTKCGCVEPAQRVFGNMKTKDVAAWSAMVLGLAINAKNQEALELFEEMEKVGP 328
Query: 159 RLDEVTYVGVLSACTH 174
R + VT++GVL+AC H
Sbjct: 329 RPNAVTFIGVLTACNH 344
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 23/140 (16%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T ++ Y G V+ A++ F M +D W+AM+ G + +EAL LF EM+ R
Sbjct: 270 TALIDFYTKCGCVEPAQRVFGNMKTKDVAAWSAMVLGLAINAKNQEALELFEEMEKVGPR 329
Query: 80 RDEFTTVRILTTFNNDIFVGIAL----------------------IDMYCKCGDVEKAQR 117
+ T + +LT N+ G AL +D+ + G +E+A
Sbjct: 330 PNAVTFIGVLTACNHKDLFGEALKLFGYMSDKYGIVASIEHYGCVVDVLARSGKIEEALE 389
Query: 118 VFWKM-LRKDKFTWTAMIVG 136
M + D W +++ G
Sbjct: 390 FIKSMEVEPDGVIWGSLLNG 409
>gi|449527549|ref|XP_004170773.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 487
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 104/189 (55%), Gaps = 21/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F KDV+ WT +V GY G ++ AR F +MPER+ + W+AM+ Y RV+ FRE
Sbjct: 168 LFDKSSGKDVVVWTVMVDGYGKVGDIESARVLFDEMPERNVISWSAMMAAYSRVSDFREV 227
Query: 67 LTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDM 105
L LFR+MQ NI ++ V +LT +++ + AL+DM
Sbjct: 228 LCLFRQMQKKNIVPNDSVIVSVLTACAHLGAITQGLWMHSYAKRYGLDSNPILATALVDM 287
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y KCG +E A VF + KD W AMI G A++G+ +L++F +M+ + + E T+
Sbjct: 288 YSKCGYIESALEVFEGISNKDAGAWNAMISGFAMTGNVVKSLELFDKMIASGTQATEATF 347
Query: 166 VGVLSACTH 174
V +L+ACTH
Sbjct: 348 VSILAACTH 356
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/208 (19%), Positives = 86/208 (41%), Gaps = 50/208 (24%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
+A IF N++ +++ + +++ GY + ++ P++ + + ++D N+
Sbjct: 62 YACGIFKNLQQRNIFMYNSMIRGY-----------FLSRFPKQAILCYLDLMDRGFLANK 110
Query: 63 F------REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIAL-------------- 102
+ + ++RE++ I+ + ND FV AL
Sbjct: 111 YTFPPLIKACALVYRELKRIGYLVHAHV---IVLGYENDAFVVSALVEFYSLFDLKVARV 167
Query: 103 ----------------IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTA 146
+D Y K GD+E A+ +F +M ++ +W+AM+ +
Sbjct: 168 LFDKSSGKDVVVWTVMVDGYGKVGDIESARVLFDEMPERNVISWSAMMAAYSRVSDFREV 227
Query: 147 LDMFSQMLRASIRLDEVTYVGVLSACTH 174
L +F QM + +I ++ V VL+AC H
Sbjct: 228 LCLFRQMQKKNIVPNDSVIVSVLTACAH 255
>gi|147810325|emb|CAN65024.1| hypothetical protein VITISV_026273 [Vitis vinifera]
Length = 805
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 105/195 (53%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
MG A +F + N+DV+ WT ++ GY G V+ AR F MPER+ + W+A++ Y RV
Sbjct: 437 MGTARTLFDRIPNRDVVLWTAMIDGYGKMGDVEHARILFEDMPERNAISWSAVMAAYSRV 496
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
F+E L LFR MQ + +E V +LT F+++ +
Sbjct: 497 GDFKEVLCLFRRMQEAGTMPNESVLVSVLTACAHLGALAQGLWVHSYAKQCNFDSNPILA 556
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+DMY KCG VE A F + KD W AMI G+A++G +L++F++M+ +
Sbjct: 557 TALVDMYSKCGCVESALSTFQGIPNKDAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQ 616
Query: 160 LDEVTYVGVLSACTH 174
E T+V VL+ACTH
Sbjct: 617 PTETTFVAVLTACTH 631
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 68/184 (36%), Gaps = 54/184 (29%)
Query: 45 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFT---TVRILTT---------- 91
R+ ++ +MI GY+ + A+ + +M + + +T ++ TT
Sbjct: 347 RNIFMYNSMIRGYVLSHSPTRAILCYLDMLNYGLLANNYTFPPLIKACTTLGSSSKLIGC 406
Query: 92 ----------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISG 141
F+ D FV ALI+ Y D+ A+ +F ++ +D WTAMI G G
Sbjct: 407 LVHAHVVTFGFDEDPFVVSALIEFYSLNFDMGTARTLFDRIPNRDVVLWTAMIDGYGKMG 466
Query: 142 HGDTA-------------------------------LDMFSQMLRASIRLDEVTYVGVLS 170
+ A L +F +M A +E V VL+
Sbjct: 467 DVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMPNESVLVSVLT 526
Query: 171 ACTH 174
AC H
Sbjct: 527 ACAH 530
>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 568
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 108/192 (56%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M ++DVISW +++ GY+ GQ++ AR+ F MP R V WT MI GY R+ +
Sbjct: 165 ACKVFEEMSHRDVISWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCY 224
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
+AL +FREMQ I DE + + +L F + AL
Sbjct: 225 GDALDVFREMQMVGIEPDEISIIAVLPACAQLGALEVGKWIHMYADKNGFLRKTGICNAL 284
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I+MY KCG +++A +F +++ KD +W+ MI GLA G G A+ +F +M + + +E
Sbjct: 285 IEMYAKCGCIDEAWNLFDQLVEKDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNE 344
Query: 163 VTYVGVLSACTH 174
+T++GVL AC+H
Sbjct: 345 ITFLGVLLACSH 356
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 79/201 (39%), Gaps = 55/201 (27%)
Query: 28 NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM---QTSNIRRDEFT 84
N G V A F Q+ + + A+I Y A+++F +M T+++ D+FT
Sbjct: 54 NLGHVSYATLLFKQLLHPNIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFT 113
Query: 85 TVRILTT-------------------FNNDIFVGI--ALIDMYCKCGDVEKAQRVFWKML 123
++ + F D ALIDMY K GD+ A +VF +M
Sbjct: 114 FPFVIKSCTGILCHRLGMQVHGLVYKFGADFHCITENALIDMYTKFGDLTNACKVFEEMS 173
Query: 124 RKDKFTWTAMIVGLA--------------------------ISGHG-----DTALDMFSQ 152
+D +W ++I G I+G+G ALD+F +
Sbjct: 174 HRDVISWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFRE 233
Query: 153 MLRASIRLDEVTYVGVLSACT 173
M I DE++ + VL AC
Sbjct: 234 MQMVGIEPDEISIIAVLPACA 254
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 97 FVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156
F+ ++D G V A +F ++L + FT+ A+I A + H +A+ +F QML
Sbjct: 43 FLVTKMLDSCDNLGHVSYATLLFKQLLHPNIFTYNAIIRTYAHNRHHSSAISVFVQMLTH 102
Query: 157 ---SIRLDEVTYVGVLSACT 173
S+ D+ T+ V+ +CT
Sbjct: 103 STNSVFPDKFTFPFVIKSCT 122
>gi|255584793|ref|XP_002533114.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527077|gb|EEF29259.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 480
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 108/194 (55%), Gaps = 23/194 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M KD+++W I++ Y+ RG++ AR+ F ++P RD V W AMI G++
Sbjct: 198 ARRLFDEMPVKDLVAWNVIITAYVKRGEMACARKLFNEVPRRDVVTWNAMIAGFVHCGEN 257
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN----------------------DIFVGIA 101
+AL +F EM + + DE T + +L+ + + +G A
Sbjct: 258 EQALEMFEEMISVGEQPDEVTMLSLLSACTDLGDLEVGKKVHSSILEMSLGDLSVLLGNA 317
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRA-SIRL 160
L MY KCG +E+A VF M KD TW ++IVGLA+ GH + ++ +F +M R +I+
Sbjct: 318 LTYMYAKCGSIERALEVFRGMREKDVTTWNSVIVGLALHGHAEESIHLFREMQRLNNIKP 377
Query: 161 DEVTYVGVLSACTH 174
+E+T+VGVL AC+H
Sbjct: 378 NEITFVGVLVACSH 391
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 18/153 (11%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
T+V + G + IAR+ F +RD V W+A+ GY R A LF EM
Sbjct: 153 TLVYYHAKCGDLGIAREMFDDSAKRDVVAWSALTAGYARRGELCMARRLFDEM------- 205
Query: 81 DEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAIS 140
V+ L +N +I Y K G++ A+++F ++ R+D TW AMI G
Sbjct: 206 ----PVKDLVAWN-------VIITAYVKRGEMACARKLFNEVPRRDVVTWNAMIAGFVHC 254
Query: 141 GHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
G + AL+MF +M+ + DEVT + +LSACT
Sbjct: 255 GENEQALEMFEEMISVGEQPDEVTMLSLLSACT 287
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 21/151 (13%)
Query: 24 SGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEF 83
S + G +D A Q F Q+ E D +W M+ G + +A++L+ +M+ I+ D+F
Sbjct: 55 SAIVIPGTIDYAHQLFDQVAEPDIFMWNTMMRGSSQSPSPIKAVSLYTQMENCGIKPDKF 114
Query: 84 TTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKM 122
T +L F + FV L+ + KCGD+ A+ +F
Sbjct: 115 TFSFLLKACTRLEWRNMGFCIHGKALKHGFQENTFVRNTLVYYHAKCGDLGIAREMFDDS 174
Query: 123 LRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
++D W+A+ G A G A +F +M
Sbjct: 175 AKRDVVAWSALTAGYARRGELCMARRLFDEM 205
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 110 GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVL 169
G ++ A ++F ++ D F W M+ G + S A+ +++QM I+ D+ T+ +L
Sbjct: 61 GTIDYAHQLFDQVAEPDIFMWNTMMRGSSQSPSPIKAVSLYTQMENCGIKPDKFTFSFLL 120
Query: 170 SACT 173
ACT
Sbjct: 121 KACT 124
>gi|449443656|ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Cucumis sativus]
Length = 525
Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 112/195 (57%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A ++F N+ K+ +SW T+++G++ G++++A Q F +MP RD + WTA+I+G L+
Sbjct: 146 LGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKH 205
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
+AL F +MQ S + D + + +L F ++I +
Sbjct: 206 GYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLGLWVHRFVMPQEFKDNIKIS 265
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
+LIDMY +CG +E A++VF KM ++ +W ++IVG A++G D +L+ F M + +
Sbjct: 266 NSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFYAMQKEGFK 325
Query: 160 LDEVTYVGVLSACTH 174
D V+Y G L+AC+H
Sbjct: 326 PDGVSYTGALTACSH 340
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 76/181 (41%), Gaps = 55/181 (30%)
Query: 48 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT---FNNDIF------- 97
VLWT+ + Y R + EA F M+ + + + T + +L+ F ++ F
Sbjct: 58 VLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLH 117
Query: 98 --------------VGIALIDMYCKCGDVEKAQRVFW----------------------- 120
VG ALIDMY KC + A++VF+
Sbjct: 118 GYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEI 177
Query: 121 --------KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+M +D +WTA+I GL G+ + AL+ F QM R+ + D V+ + VL+AC
Sbjct: 178 ELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAAC 237
Query: 173 T 173
Sbjct: 238 A 238
>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 65/192 (33%), Positives = 110/192 (57%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
AL F + K SW +++ G+ G VD AR +F ++PE+D V W M++ Y++ + F
Sbjct: 422 ALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLF 481
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT------FNNDIFV---------------GIAL 102
E+ +F +MQ+SN++ D+ T + +L++ N+ I+V G AL
Sbjct: 482 NESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTAL 541
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG VE A +F +++ K+ F WTAM+ A+ G A+D++ +M ++ D
Sbjct: 542 IDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDH 601
Query: 163 VTYVGVLSACTH 174
VT++ +L+AC+H
Sbjct: 602 VTFIALLAACSH 613
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 57/165 (34%), Positives = 89/165 (53%), Gaps = 21/165 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV+ WTT+VSGY+ ++D ARQ F +M ER V WT M+ GY++ + E+L LF++M+
Sbjct: 301 DVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMR 360
Query: 75 TSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVE 113
N+ DE V +L+ + D F+G AL+D+Y KCG ++
Sbjct: 361 FENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLD 420
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
+A R F ++ K +W +M+ G SG D A D F+++ I
Sbjct: 421 EALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDI 465
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 57/203 (28%), Positives = 87/203 (42%), Gaps = 54/203 (26%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT 85
Y G++ Q F +M RD + W MI Y+ +REAL LF EM S + DE T
Sbjct: 178 YSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITM 237
Query: 86 VRILTT-----------------FNNDIFVGIAL----IDMYCKCGD------------- 111
V +++T +N +++ +L +DMY KCG
Sbjct: 238 VSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDE 297
Query: 112 --------------------VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
++KA+++F KM + +WT M+ G G+ +L++F
Sbjct: 298 SEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQ 357
Query: 152 QMLRASIRLDEVTYVGVLSACTH 174
QM ++ DEV V VLSAC H
Sbjct: 358 QMRFENVIPDEVALVTVLSACVH 380
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 41/174 (23%), Positives = 78/174 (44%), Gaps = 21/174 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+ +++ ++ +D A Q + E + ++W +++ L+ +E L + M T +
Sbjct: 71 SQVLAFLLSVNNLDCAHQILSYSHEPESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVL 130
Query: 80 RDEFT--------------------TVRILTT-FNNDIFVGIALIDMYCKCGDVEKAQRV 118
D T RIL F + + L+ +Y KCG +++ ++
Sbjct: 131 LDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQL 190
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
F KM +D +W MI + G ALD+F +ML + + DE+T V ++S C
Sbjct: 191 FEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTC 244
>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 586
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 71/184 (38%), Positives = 101/184 (54%), Gaps = 24/184 (13%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV+SW T+VSGY G + AR+ FA+MPER+ V W+AM+D +R F EAL +F M
Sbjct: 144 DVVSWNTMVSGYGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMM 203
Query: 75 TSNIRRDEFTTVRILTTF------------------------NNDIFVGIALIDMYCKCG 110
R D V +L ++ + AL+DMYCKCG
Sbjct: 204 REEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCG 263
Query: 111 DVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLS 170
+E A +VF + R+D W AMI GLA++G+G+ AL++F +ML+ +E T++ VL
Sbjct: 264 CMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLC 323
Query: 171 ACTH 174
ACTH
Sbjct: 324 ACTH 327
>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 758
Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 105/196 (53%), Gaps = 22/196 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A E+F M N+D +SW +++GY G+V++ + F +MPER+ W +I GY++
Sbjct: 223 MAAARELFDKMPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKN 282
Query: 61 NRFREALTLFREMQTS-NIRRDEFTTVRILTT---------------------FNNDIFV 98
F E L F+ M ++ ++FT V +L+ + ++FV
Sbjct: 283 GLFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMGKWVHVYAESIGYKGNLFV 342
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
G LIDMY KCG +E A VF + RKD +W +I GLAI GH AL MF +M
Sbjct: 343 GNVLIDMYAKCGVIENAVVVFNCLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGE 402
Query: 159 RLDEVTYVGVLSACTH 174
D VT+VG+LSACTH
Sbjct: 403 EPDGVTFVGILSACTH 418
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 85/171 (49%), Gaps = 19/171 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++FG M ++V+ WT I++GYI G V R+ F PERD V+W+ +I GY+
Sbjct: 164 AYKVFGEMHERNVVVWTAIINGYILCGDVVSGRRLFDLAPERDVVMWSVLISGYIESKNM 223
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
A LF +M N D A+++ Y G+VE ++VF +M
Sbjct: 224 AAARELFDKMP------------------NRDTMSWNAMLNGYAVNGEVEMFEKVFDEMP 265
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQML-RASIRLDEVTYVGVLSACT 173
++ F+W +I G +G L+ F +ML + ++ T V VLSAC+
Sbjct: 266 ERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACS 316
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 21/132 (15%)
Query: 31 QVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT 90
++ AR+ F ++P+ + W AM GYL+ R+ + LF E+ + FT I+
Sbjct: 59 RIHHARKLFDKIPQPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIK 118
Query: 91 T---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT 129
+ F ++ FV +LIDMY K G VE A +VF +M ++
Sbjct: 119 SCGKLEGVREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVV 178
Query: 130 WTAMIVGLAISG 141
WTA+I G + G
Sbjct: 179 WTAIINGYILCG 190
>gi|255556578|ref|XP_002519323.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541638|gb|EEF43187.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 396
Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 100/187 (53%), Gaps = 21/187 (11%)
Query: 10 NMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 69
+M ++ ISWTT++SGY G VD A + F MPER+ W AMI Y++ NRF E+ L
Sbjct: 204 SMPEQNFISWTTLISGYSQWGLVDEAFRVFQSMPERNSASWNAMIAAYVQGNRFHESFAL 263
Query: 70 FREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCK 108
F M+ + D+F +L+ D + A+IDMYCK
Sbjct: 264 FDRMRAEGVVLDKFVAATMLSACTGLGALEQGKWIHGYIEKKGIEKDSKLATAIIDMYCK 323
Query: 109 CGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGV 168
CG +EKA VF + K +W MI GLA+ G G+ A+++F +M + + D +T+V +
Sbjct: 324 CGSLEKALEVFKGLPHKGISSWNCMIGGLAMHGKGEAAIELFKEMEKEMLAPDRITFVNL 383
Query: 169 LSACTHN 175
LSAC H+
Sbjct: 384 LSACAHS 390
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 67/167 (40%), Gaps = 21/167 (12%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 67
G +K V++ S N + A + F +P D + +I YL+ ++
Sbjct: 70 LGLSADKHVMTQLINFSALSNNRDLAYAIKLFDSIPNPDAFFYNTIIKAYLQHLSPTNSI 129
Query: 68 TLFREMQTSNIRRDEFTTVRIL--TTFNNDIFVGIA-------------------LIDMY 106
L+ M ++ ++FT ++ ++DI +G LI MY
Sbjct: 130 LLYSHMLQHSVFPNDFTFPSVIRACCIHDDIQLGKQIHAHVLKLGFGAHVISLNNLIHMY 189
Query: 107 CKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+ E+A+ V + M ++ +WT +I G + G D A +F M
Sbjct: 190 ARFQAFEEARCVLYSMPEQNFISWTTLISGYSQWGLVDEAFRVFQSM 236
>gi|218194384|gb|EEC76811.1| hypothetical protein OsI_14939 [Oryza sativa Indica Group]
Length = 540
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 71/174 (40%), Positives = 103/174 (59%), Gaps = 7/174 (4%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +++ + KD++ TT+V GY G+V+IA F MPE+D V W+AMI GY
Sbjct: 221 MEMAEKLYNRVSEKDIVLSTTMVYGYAKNGKVEIAHSIFNGMPEKDVVSWSAMIAGYAES 280
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
++ EAL LF +MQ S ++ DE T + IL +G ALIDM+ KCG + A VF
Sbjct: 281 SKPMEALNLFHDMQRSGVQPDEITMLSILP-------IGNALIDMFSKCGSLTLALDVFN 333
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
M +K+ TWT++I A+ G G +AL +F M I+ + VT++G+L AC H
Sbjct: 334 AMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCH 387
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 57/202 (28%), Positives = 87/202 (43%), Gaps = 52/202 (25%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T +V Y G+V+ AR+ F MP+RD V W M+D Y + + EAL LF M+ S +
Sbjct: 108 TALVRAYAACGRVEDARKVFDGMPDRDLVAWGVMLDCYCQARNYEEALLLFHSMKRSRVV 167
Query: 80 RDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVEKAQR- 117
D+ +L+T + D V AL++MY C D+E A++
Sbjct: 168 PDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDALIDAQVSCALMNMYASCADMEMAEKL 227
Query: 118 ------------------------------VFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
+F M KD +W+AMI G A S AL
Sbjct: 228 YNRVSEKDIVLSTTMVYGYAKNGKVEIAHSIFNGMPEKDVVSWSAMIAGYAESSKPMEAL 287
Query: 148 DMFSQMLRASIRLDEVTYVGVL 169
++F M R+ ++ DE+T + +L
Sbjct: 288 NLFHDMQRSGVQPDEITMLSIL 309
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 42/80 (52%)
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML 154
D FVG AL+ Y CG VE A++VF M +D W M+ + + + AL +F M
Sbjct: 103 DGFVGTALVRAYAACGRVEDARKVFDGMPDRDLVAWGVMLDCYCQARNYEEALLLFHSMK 162
Query: 155 RASIRLDEVTYVGVLSACTH 174
R+ + D+V VLS C H
Sbjct: 163 RSRVVPDQVIIATVLSTCAH 182
>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g22690-like [Glycine max]
Length = 836
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 68/192 (35%), Positives = 110/192 (57%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F +M NK V++W ++++G + G +++A + F +M ERD V W MI ++V+ F
Sbjct: 386 ACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMF 445
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTF-----------------NNDIFV----GIAL 102
EA+ LFREMQ I D T V I + NDI V G AL
Sbjct: 446 EEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTAL 505
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DM+ +CGD A VF +M ++D WTA I +A+ G+ + A+++F++ML ++ D+
Sbjct: 506 VDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDD 565
Query: 163 VTYVGVLSACTH 174
V +V +L+AC+H
Sbjct: 566 VVFVALLTACSH 577
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 46/181 (25%), Positives = 87/181 (48%), Gaps = 21/181 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ +++ Y G+VD+ R+ F M ER+ V WT++I+GY + +EA++LF +M
Sbjct: 164 DIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMG 223
Query: 75 TSNIRRDEFTTVRILTTFN--NDIFVGI-------------------ALIDMYCKCGDVE 113
+ + + T V +++ D+ +G AL+DMY KCGD+
Sbjct: 224 EAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDIC 283
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
A+++F + K+ + ++ L + +ML+ R D+VT + ++AC
Sbjct: 284 AARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACA 343
Query: 174 H 174
Sbjct: 344 Q 344
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 80/205 (39%), Gaps = 52/205 (25%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
+V Y+ G + ARQ F + ++ V++ ++ Y+ + L + EM R D
Sbjct: 272 LVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPD 331
Query: 82 EFTTVRILTTFNN--DIFVGI-------------------ALIDMYCKC----------- 109
+ T + + D+ VG A+IDMY KC
Sbjct: 332 KVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFE 391
Query: 110 --------------------GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDM 149
GD+E A R+F +ML +D +W MI L + A+++
Sbjct: 392 HMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIEL 451
Query: 150 FSQMLRASIRLDEVTYVGVLSACTH 174
F +M I D VT VG+ SAC +
Sbjct: 452 FREMQNQGIPGDRVTMVGIASACGY 476
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 21/145 (14%)
Query: 49 LWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT----------------- 91
++ +I GY +A+ L+ +M I D++T +L+
Sbjct: 97 MYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAV 156
Query: 92 ----FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
DIFV +LI Y +CG V+ +++F ML ++ +WT++I G + A+
Sbjct: 157 LKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAV 216
Query: 148 DMFSQMLRASIRLDEVTYVGVLSAC 172
+F QM A + + VT V V+SAC
Sbjct: 217 SLFFQMGEAGVEPNPVTMVCVISAC 241
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 22/158 (13%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T +V + G A F +M +RD WTA I A+ LF EM ++
Sbjct: 503 TALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVK 562
Query: 80 RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM-----LRKDKFTWTAMI 134
D+ V +LT ++ G V++ +++FW M +R + M+
Sbjct: 563 PDDVVFVALLTACSHG--------------GSVDQGRQLFWSMEKAHGIRPHIVHYGCMV 608
Query: 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
L +G + A+D+ M I ++V + +L+AC
Sbjct: 609 DLLGRAGLLEEAVDLIQSM---PIEPNDVVWGSLLAAC 643
>gi|345505208|gb|AEN99828.1| chlororespiratory reduction 4 [Arabis hirsuta]
Length = 615
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 113/194 (58%), Gaps = 22/194 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +DV++W T+V GY G V A+ F QMP+RD V + +M+ GY++
Sbjct: 273 AKDLFDKMPRRDVVTWATMVDGYAKLGFVHQAKSLFDQMPQRDVVAYNSMMAGYVQNRYH 332
Query: 64 REALTLFREMQT-SNIRRDEFTTVRILTTFNN--------DIFV-------------GIA 101
EA+ +F +M+ S++ DE T V +L+ D+ + G+A
Sbjct: 333 MEAIDIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYTVEKKFLLGGKLGVA 392
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMY KCG +++A VF ++ K W AMI GLAI G G++A DM Q+ R SI+ D
Sbjct: 393 LIDMYSKCGSIQQAMGVFERIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPD 452
Query: 162 EVTYVGVLSACTHN 175
++T+VGVL+AC+H+
Sbjct: 453 DITFVGVLNACSHS 466
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 93/172 (54%), Gaps = 22/172 (12%)
Query: 4 ALEIFGNMKN--KDVISWTTIVSGYINRGQ-VDIARQYFAQMPERDYVLWTAMIDGYLRV 60
A E+F M + K++ISW ++++GY R VDIA F +MPE+D + W ++IDGY++
Sbjct: 208 ARELFDLMPSEKKNLISWNSMINGYAQRADGVDIASNLFDEMPEKDLISWNSLIDGYVKH 267
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
R +A LF +M RRD T ++D Y K G V +A+ +F
Sbjct: 268 GRIEDAKDLFDKMP----RRDVVTWA--------------TMVDGYAKLGFVHQAKSLFD 309
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS-IRLDEVTYVGVLSA 171
+M ++D + +M+ G + + A+D+F+ M + S + DE T V VLSA
Sbjct: 310 QMPQRDVVAYNSMMAGYVQNRYHMEAIDIFNDMEKESHLSPDETTLVIVLSA 361
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 21/130 (16%)
Query: 45 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFN----------- 93
D LW A+I + R+AL LF M + + D+F+ +L +
Sbjct: 86 EDPFLWNAVIKSHSHGVEPRKALLLFFLMLKNGVSVDKFSLSLVLKACSRLGFVKEGMQX 145
Query: 94 ----------NDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHG 143
+D+F+ LI +Y KCG + A++VF +M ++D ++ +MI G G
Sbjct: 146 HGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMSQRDSVSYNSMIDGYVKCGLI 205
Query: 144 DTALDMFSQM 153
++A ++F M
Sbjct: 206 ESARELFDLM 215
>gi|91806359|gb|ABE65907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 555
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 112/196 (57%), Gaps = 23/196 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +F M +K VI+WTT++ GY N +D AR+ F MPER+ V W MI GY +
Sbjct: 192 MTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQN 251
Query: 61 NRFREALTLFREMQ-TSNIRRDEFTTVRILTTFNN---------------------DIFV 98
+ +E +TLF+EMQ T+++ D+ T + +L ++ + V
Sbjct: 252 KQPQEGITLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKV 311
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
A++DMY KCG++EKA+R+F +M K +W AMI G A++G+ ALD+F M+
Sbjct: 312 CTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEE- 370
Query: 159 RLDEVTYVGVLSACTH 174
+ DE+T + V++AC H
Sbjct: 371 KPDEITMLAVITACNH 386
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 86/173 (49%), Gaps = 20/173 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE-RDYVLWTAMIDGYLR 59
MG A F M ++ +SWT ++SGYI G++D+A + F QMP +D V++ AM+DG+++
Sbjct: 129 MGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGFVK 188
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119
A LF EM TV TT +I YC D++ A+++F
Sbjct: 189 SGDMTSARRLFDEMT--------HKTVITWTT----------MIHGYCNIKDIDAARKLF 230
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM-LRASIRLDEVTYVGVLSA 171
M ++ +W MI G + + +F +M S+ D+VT + VL A
Sbjct: 231 DAMPERNLVSWNTMIGGYCQNKQPQEGITLFQEMQATTSLDPDDVTILSVLPA 283
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 31/161 (19%)
Query: 16 VISWTTIVSGYINRGQVDIARQYFAQMPERD-YVLWTAMIDGYLRVNRFREALTLFREMQ 74
VIS + + GY AR+ F Q P+RD L +MI YL ++ ++ L+R+++
Sbjct: 18 VISASAVGIGY--------ARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLR 69
Query: 75 TSN-IRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDV 112
D FT + + F D++V ++DMY K G +
Sbjct: 70 KETCFAPDNFTFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKM 129
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
A+ F +M + + +WTA+I G G D A +F QM
Sbjct: 130 GCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQM 170
>gi|224056823|ref|XP_002299041.1| predicted protein [Populus trichocarpa]
gi|222846299|gb|EEE83846.1| predicted protein [Populus trichocarpa]
Length = 601
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 106/183 (57%), Gaps = 22/183 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV+S+T +++ Y+ G +D+AR F ++ ++D VLW M+ Y++ EAL LF +M
Sbjct: 245 DVVSYTILINAYVEMGLIDLARDVFDEIVDKDRVLWNLMVHAYVKARCPNEALDLFEKMD 304
Query: 75 TSNIRRDEFTTV---------------RILTTFNN-------DIFVGIALIDMYCKCGDV 112
++ + DE T V R+L F N D+F+ ALI MY KCG V
Sbjct: 305 SAGVIPDENTMVSVLLACASISDLQCARLLHRFINRNSNVRQDVFLKTALITMYSKCGSV 364
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
E+A F+KM D FTWTAMI GLA +G+G+ AL MF++M IR +E T V VL+AC
Sbjct: 365 EEALVTFYKMEYTDVFTWTAMIEGLANNGYGNEALSMFNRMENQGIRPNESTLVSVLTAC 424
Query: 173 THN 175
H+
Sbjct: 425 IHS 427
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 84/215 (39%), Gaps = 55/215 (25%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ D+ +V Y + G A F +MP+RD W +++ Y N F E + LF++
Sbjct: 108 DSDIYVQNALVHFYGSVGNSTDACFLFDRMPDRDVASWNSLMGIYNTNNSFTEVMVLFKK 167
Query: 73 MQTSNIRRDEFTTVRILTT-----------------------FNNDIFVGIALIDMYCKC 109
+ ++ D+ + V +L+ F + V AL++ Y KC
Sbjct: 168 LMCGCVKADKISLVIVLSACAQAQMEGLEYGRSVHGYVIKVGFGCFLNVDNALLNFYIKC 227
Query: 110 GDVEKAQR--------------------------------VFWKMLRKDKFTWTAMIVGL 137
+++ A + VF +++ KD+ W M+
Sbjct: 228 KEIDDASKMFDEFVHEGDVVSYTILINAYVEMGLIDLARDVFDEIVDKDRVLWNLMVHAY 287
Query: 138 AISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+ + ALD+F +M A + DE T V VL AC
Sbjct: 288 VKARCPNEALDLFEKMDSAGVIPDENTMVSVLLAC 322
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 69/163 (42%), Gaps = 20/163 (12%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
+DV T +++ Y G V+ A F +M D WTAMI+G EAL++F M
Sbjct: 346 QDVFLKTALITMYSKCGSVEEALVTFYKMEYTDVFTWTAMIEGLANNGYGNEALSMFNRM 405
Query: 74 QTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
+ IR +E T V +LT A I G V++ ++F M+ K
Sbjct: 406 ENQGIRPNESTLVSVLT----------ACI----HSGLVKEGCQLFKSMVSDYKMQLKME 451
Query: 134 IVGLAISGHGDTAL----DMFSQMLRASIRLDEVTYVGVLSAC 172
G I L + F Q+L RL + Y +LSAC
Sbjct: 452 HFGCLIDLLSRAGLLHQAEEFIQLLLPEERL--IAYKTLLSAC 492
Score = 39.7 bits (91), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 45/87 (51%)
Query: 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
I T ++DI+V AL+ Y G+ A +F +M +D +W +++ + +
Sbjct: 103 IKTGLDSDIYVQNALVHFYGSVGNSTDACFLFDRMPDRDVASWNSLMGIYNTNNSFTEVM 162
Query: 148 DMFSQMLRASIRLDEVTYVGVLSACTH 174
+F +++ ++ D+++ V VLSAC
Sbjct: 163 VLFKKLMCGCVKADKISLVIVLSACAQ 189
>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 722
Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats.
Identities = 70/200 (35%), Positives = 112/200 (56%), Gaps = 25/200 (12%)
Query: 1 MGFALEIFGNM-KNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR 59
+ A +F M +K +W+++V GY G++++AR+ F M ERD + WTAMI GY +
Sbjct: 265 INIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQ 324
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILT----------------------TFNNDIF 97
+ EAL LF+EM+ I+ DE T V +L+ FN +
Sbjct: 325 AGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTI 384
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLR--KDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155
+ A++DMY KCG ++ A +F ++ + K F + +MI GLA G G+TA+ +F +++
Sbjct: 385 LTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELIS 444
Query: 156 ASIRLDEVTYVGVLSACTHN 175
++ DEVT+VGVL AC H+
Sbjct: 445 TGLKPDEVTFVGVLCACGHS 464
Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 67/213 (31%), Positives = 94/213 (44%), Gaps = 55/213 (25%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ ++ Y G +++AR F + RD V + MI GY VN+ AL LF EMQ
Sbjct: 145 DLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQ 204
Query: 75 TSNIRRDEFTTVRI-----------------------LTTFNNDIFVGIALIDMYCKCGD 111
S I DEFT V + L + +++I + A++DMY KCG
Sbjct: 205 NSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGL 264
Query: 112 VEKAQRVF-----------WK---------------------MLRKDKFTWTAMIVGLAI 139
+ A+RVF W M +D +WTAMI G +
Sbjct: 265 INIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQ 324
Query: 140 SGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+G AL++F +M I+ DEVT V VLSAC
Sbjct: 325 AGQCSEALELFKEMEALGIKPDEVTLVAVLSAC 357
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 22/164 (13%)
Query: 32 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR-DEFTTVRILT 90
+D +R F+Q+ + +W MI GY R + REA+ L+ M I + FT +L
Sbjct: 60 LDHSRLLFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLN 119
Query: 91 T---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT 129
+ F +D+FV ALI +Y G++ A+ +F + L +D +
Sbjct: 120 SCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVS 179
Query: 130 WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+ MI G A ++AL +F +M + I DE T+V + S C+
Sbjct: 180 YNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCS 223
>gi|356529920|ref|XP_003533534.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g15300-like [Glycine max]
Length = 555
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 106/194 (54%), Gaps = 20/194 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ A ++F M +D++SW +++ Y G+++ AR+ F + P +D V W AM+ GY+
Sbjct: 189 LSVARKLFDEMPKRDLVSWNVMITAYTKHGEMECARRLFDEAPMKDVVSWNAMVGGYVLH 248
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN--------------------DIFVGI 100
N +EAL LF EM DE T + +L+ + +G
Sbjct: 249 NLNQEALELFDEMCEVGECPDEVTMLSLLSACADLGDXGEKVHAKIMELNKGKLSTLLGN 308
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
AL+DMY KCG++ K VFW + KD +W ++I GLA GH + +L +F +M R +
Sbjct: 309 ALVDMYAKCGNIGKGVCVFWLIRDKDMVSWNSVIGGLAFHGHAEESLGLFREMQRTKVCP 368
Query: 161 DEVTYVGVLSACTH 174
DE+T+VGVL+AC+H
Sbjct: 369 DEITFVGVLAACSH 382
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 75/159 (47%), Gaps = 18/159 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
+V+ T++ + G + +A F + D V W+A+I GY + A LF EM
Sbjct: 141 NVVVRNTLLVFHAKCGDLKVANDIFDDSDKGDVVAWSALIAGYAQRGDLSVARKLFDEMP 200
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
+RD L ++N +I Y K G++E A+R+F + KD +W AM+
Sbjct: 201 ----KRD-------LVSWN-------VMITAYTKHGEMECARRLFDEAPMKDVVSWNAMV 242
Query: 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
G + AL++F +M DEVT + +LSAC
Sbjct: 243 GGYVLHNLNQEALELFDEMCEVGECPDEVTMLSLLSACA 281
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 21/142 (14%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT--- 91
A Q FAQ+P+ D +W I G + + A+ L+ +M +++ D FT +L
Sbjct: 60 AVQMFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMTHRSVKPDNFTFPLVLKACTK 119
Query: 92 ------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
F +++ V L+ + KCGD++ A +F + D W+A+
Sbjct: 120 LFWVNTGSVVHGRVFRLGFGSNVVVRNTLLVFHAKCGDLKVANDIFDDSDKGDVVAWSAL 179
Query: 134 IVGLAISGHGDTALDMFSQMLR 155
I G A G A +F +M +
Sbjct: 180 IAGYAQRGDLSVARKLFDEMPK 201
>gi|413924746|gb|AFW64678.1| hypothetical protein ZEAMMB73_926861 [Zea mays]
Length = 655
Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats.
Identities = 73/195 (37%), Positives = 105/195 (53%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +++ M KD++S T +VSGY +V+IAR F MPE+D V W+AMI GY+
Sbjct: 302 MEMAEKLYNEMPRKDLVSSTAMVSGYARNRKVEIARSIFDGMPEKDVVSWSAMISGYVDS 361
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
N+ EAL+LF MQ IR DE T + +++ N + +
Sbjct: 362 NQPNEALSLFNGMQECGIRSDEITMLSVISACANLGSLDKAKWIHAFIKNSGLNKVLHIC 421
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDM+ KCG + A VF +M K+ TWT+MI A+ G G ++L +F QM
Sbjct: 422 NALIDMFAKCGGINLALNVFNEMPLKNVITWTSMISAFAMHGDGKSSLRLFEQMKDEGAE 481
Query: 160 LDEVTYVGVLSACTH 174
+EVT++ +L AC H
Sbjct: 482 PNEVTFLSLLYACCH 496
Score = 82.4 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 58/207 (28%), Positives = 90/207 (43%), Gaps = 52/207 (25%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T + Y G V R+ F M RD V W M+D Y + ++EAL LF +M+ S +
Sbjct: 189 TALAGAYAACGCVRDTRKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLLFAKMKNSGVV 248
Query: 80 RDEFTTVRILTT-----------------FNNDIFVGI----ALIDMYCKCGDVEKAQRV 118
D+ +L +D+ +G ALI +Y C ++E A+++
Sbjct: 249 PDQLILATVLPACGHIRHLRIGKAIHSYMLVSDMIIGAHISSALISLYASCANMEMAEKL 308
Query: 119 FWKMLRKDKFTWTAMIVGLA--------------------------ISGHGDT-----AL 147
+ +M RKD + TAM+ G A ISG+ D+ AL
Sbjct: 309 YNEMPRKDLVSSTAMVSGYARNRKVEIARSIFDGMPEKDVVSWSAMISGYVDSNQPNEAL 368
Query: 148 DMFSQMLRASIRLDEVTYVGVLSACTH 174
+F+ M IR DE+T + V+SAC +
Sbjct: 369 SLFNGMQECGIRSDEITMLSVISACAN 395
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 94 NDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+D FVG AL Y CG V ++VF M +D +W M+ + + AL +F++M
Sbjct: 183 DDGFVGTALAGAYAACGCVRDTRKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLLFAKM 242
Query: 154 LRASIRLDEVTYVGVLSACTH 174
+ + D++ VL AC H
Sbjct: 243 KNSGVVPDQLILATVLPACGH 263
>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 658
Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 111/196 (56%), Gaps = 24/196 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +DVISWT +++ Y G ++ A F +P +D V WTAM+ G+ + +
Sbjct: 204 ARKVFDEMPERDVISWTELIAAYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKP 263
Query: 64 REALTLFREMQTSNIRRDEFTTVRILT-----------------------TFNNDIFVGI 100
+EAL F M+ S IR DE T ++ + ++ + +G
Sbjct: 264 QEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGS 323
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML-RASIR 159
ALIDMY KCG+VE+A VF M K+ F++++MI+GLA G ALD+F M+ + +I+
Sbjct: 324 ALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIK 383
Query: 160 LDEVTYVGVLSACTHN 175
+ VT+VG L+AC+H+
Sbjct: 384 PNTVTFVGALTACSHS 399
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 74/182 (40%), Gaps = 52/182 (28%)
Query: 45 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNND--------- 95
R+ LWTA+I GY +F EA+ ++ M+ I FT +L +
Sbjct: 113 RNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQF 172
Query: 96 ------------IFVGIALIDMYCKCGDVEKAQRVFWKMLR------------------- 124
++VG +IDMY KCG + A++VF +M
Sbjct: 173 HAQTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNM 232
Query: 125 ------------KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
KD WTAM+ G A + AL+ F +M ++ IR DEVT G +SAC
Sbjct: 233 ESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISAC 292
Query: 173 TH 174
Sbjct: 293 AQ 294
>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic [Vitis vinifera]
gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats.
Identities = 67/182 (36%), Positives = 107/182 (58%), Gaps = 21/182 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+++W +++ G G+VD +R+ F +MP R+ V W +MI GY+R R REAL LF +MQ
Sbjct: 190 DIVAWNSMIMGLAKCGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQ 249
Query: 75 TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVE 113
I+ EFT V +L F ++ V ++IDMYCKCG +
Sbjct: 250 EERIKPSEFTMVSLLNASARLGALKQGEWIHDYIRKNNFELNVIVTASIIDMYCKCGSIG 309
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+A +VF K +W MI+GLA++G + A+ +FS++ +++R D+VT+VGVL+AC
Sbjct: 310 EAFQVFEMAPLKGLSSWNTMILGLAMNGCENEAIQLFSRLECSNLRPDDVTFVGVLTACN 369
Query: 174 HN 175
++
Sbjct: 370 YS 371
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 44/195 (22%), Positives = 83/195 (42%), Gaps = 26/195 (13%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQM-------PERDYVLWTAM 53
+ +A +F + + ++ SW TI+ G+ A F M P R + + ++
Sbjct: 74 INYAYLVFTQIHSPNLFSWNTIIRGFSQSSTPHHAISLFIDMLIVSSVQPHR--LTYPSV 131
Query: 54 IDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN-----------------DI 96
Y ++ L + ++ D F I+ + N DI
Sbjct: 132 FKAYAQLGLAHYGAQLHGRVIKLGLQFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDI 191
Query: 97 FVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156
++I KCG+V++++++F +M ++ +W +MI G +G ALD+F QM
Sbjct: 192 VAWNSMIMGLAKCGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQEE 251
Query: 157 SIRLDEVTYVGVLSA 171
I+ E T V +L+A
Sbjct: 252 RIKPSEFTMVSLLNA 266
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 34/152 (22%), Positives = 65/152 (42%), Gaps = 23/152 (15%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ-TSNIRRDEFTTVRI 88
G ++ A F Q+ + W +I G+ + + A++LF +M S+++ T +
Sbjct: 72 GDINYAYLVFTQIHSPNLFSWNTIIRGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSV 131
Query: 89 LTTFNN---------------------DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDK 127
+ D F+ +I MY CG + + + F++ + D
Sbjct: 132 FKAYAQLGLAHYGAQLHGRVIKLGLQFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDI 191
Query: 128 FTWTAMIVGLAISGHGDTALDMFSQM-LRASI 158
W +MI+GLA G D + +F +M LR ++
Sbjct: 192 VAWNSMIMGLAKCGEVDESRKLFDEMPLRNTV 223
>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 775
Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 100/181 (55%), Gaps = 21/181 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ISW +++SGY+ G + A F MPE+D V W+AMI GY + F EAL LF+EMQ
Sbjct: 336 DLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQ 395
Query: 75 TSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVE 113
+R DE V ++ + ++ + LIDMY KCG VE
Sbjct: 396 LHGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVE 455
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
A VF+ M K TW A+I+GLA++G + +L+MF+ M + +E+T++GVL AC
Sbjct: 456 NALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACR 515
Query: 174 H 174
H
Sbjct: 516 H 516
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 100/260 (38%), Gaps = 86/260 (33%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER--------------- 45
+G A +F D++SW T+++GY+ G+V+ A + F MPER
Sbjct: 156 VGSARRVFEESPVLDLVSWNTLLAGYVQAGEVEEAERVFEGMPERNTIASNSMIALFGRK 215
Query: 46 ------------------DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVR 87
D V W+AM+ Y + EAL LF EM+ S + DE V
Sbjct: 216 GCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVS 275
Query: 88 ILTTFNN-------------DIFVGI--------ALIDMYCKCGDVEKAQRV-------- 118
L+ + + VG+ ALI +Y CG++ A+R+
Sbjct: 276 ALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELL 335
Query: 119 ------------------------FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML 154
F+ M KD +W+AMI G A AL +F +M
Sbjct: 336 DLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQ 395
Query: 155 RASIRLDEVTYVGVLSACTH 174
+R DE V +SACTH
Sbjct: 396 LHGVRPDETALVSAISACTH 415
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 78/161 (48%), Gaps = 20/161 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV T+++ Y G V AR+ F + P D V W ++ GY++ EA +F M
Sbjct: 139 DVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAGEVEEAERVFEGMP 198
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF--WKMLRKDKFTWTA 132
N T +N ++I ++ + G VEKA+R+F + +D +W+A
Sbjct: 199 ERN------------TIASN------SMIALFGRKGCVEKARRIFNGVRGRERDMVSWSA 240
Query: 133 MIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
M+ + G+ AL +F +M + + +DEV V LSAC+
Sbjct: 241 MVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACS 281
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 69/156 (44%), Gaps = 19/156 (12%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
++L IF +++N + +W TI+ ++ Y P + + + + + + +
Sbjct: 56 YSLRIFNHLRNPNTFTWNTIMRAHL----------YLQNSPHQALLHYKLFLASHAKPDS 105
Query: 63 FREALTLFREMQTSNIRRDEFTTVR-----ILTTFNNDIFVGIALIDMYCKCGDVEKAQR 117
+ + L Q R EF + + + F+ D++V L+++Y CG V A+R
Sbjct: 106 YTYPILL----QCCAARVSEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARR 161
Query: 118 VFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
VF + D +W ++ G +G + A +F M
Sbjct: 162 VFEESPVLDLVSWNTLLAGYVQAGEVEEAERVFEGM 197
>gi|357519199|ref|XP_003629888.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355523910|gb|AET04364.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 515
Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 115/202 (56%), Gaps = 34/202 (16%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A ++F N++V+ WT++VSGY + G V+ AR F +MP R+ ++AM+ GY+R
Sbjct: 138 LARQVFDECSNRNVVCWTSLVSGYCSCGLVNEARDVFDKMPLRNEASYSAMVSGYVRNGF 197
Query: 63 FREALTLFREMQTSNIRRDE------FTTVRILTTFNN---------------------- 94
F E + LFRE++ ++D+ F +++ N
Sbjct: 198 FSEGVQLFRELK----KKDKGCACLKFNGALLVSVLNACTMVGAFEEGKWIHSYVEENGL 253
Query: 95 --DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
D+ +G ALID Y KCG V+ A++VF KM KD TW+AMI+GLAI+G+ AL++F +
Sbjct: 254 EYDLELGTALIDFYMKCGWVKGAEKVFNKMPVKDVATWSAMILGLAINGNNKMALELFEK 313
Query: 153 MLRASIRLDEVTYVGVLSACTH 174
M + + +EVT+VGVL+AC H
Sbjct: 314 MEKVGPKPNEVTFVGVLTACNH 335
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 23/146 (15%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T ++ Y+ G V A + F +MP +D W+AMI G + AL LF +M+ +
Sbjct: 261 TALIDFYMKCGWVKGAEKVFNKMPVKDVATWSAMILGLAINGNNKMALELFEKMEKVGPK 320
Query: 80 RDEFTTVRILTTFNNDIFVGIA----------------------LIDMYCKCGDVEKAQR 117
+E T V +LT N+ G + ++D+ + G V+KA
Sbjct: 321 PNEVTFVGVLTACNHKSLFGESARLFGIMSEKYNITPSIEHYGCVVDVLARSGQVKKALT 380
Query: 118 VFWKM-LRKDKFTWTAMIVGLAISGH 142
M + D W +++ G + GH
Sbjct: 381 FINSMHIEPDGAIWGSLLNGCLMHGH 406
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/199 (19%), Positives = 86/199 (43%), Gaps = 33/199 (16%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQM------PERDYVLWTAMIDG 56
+A +F ++ N ++ + +I++ Y Q F +M P +T ++
Sbjct: 40 YAETLFTHIPNPNIFDYNSIITSYTTNSQFHKLFFVFTKMLNTNIRPNSH--TFTTLVKA 97
Query: 57 YLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTF-----------------NNDIFVG 99
+ ++ + TL ++ S+ D + ++ F N ++
Sbjct: 98 CVSLSSLEQVFTLSMKLGNSS---DVYFVSSVINAFSKHSAIHLARQVFDECSNRNVVCW 154
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR---- 155
+L+ YC CG V +A+ VF KM +++ +++AM+ G +G + +F ++ +
Sbjct: 155 TSLVSGYCSCGLVNEARDVFDKMPLRNEASYSAMVSGYVRNGFFSEGVQLFRELKKKDKG 214
Query: 156 -ASIRLDEVTYVGVLSACT 173
A ++ + V VL+ACT
Sbjct: 215 CACLKFNGALLVSVLNACT 233
>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 109/195 (55%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A IF DV++W T++ G G++D +R+ F +M R+ V W +MI GY+R
Sbjct: 148 LGEAQRIFDGATGFDVVTWNTMIIGLAKCGEIDKSRRLFDKMLLRNTVSWNSMISGYVRK 207
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
RF EA+ LF MQ I+ EFT V +L F + V
Sbjct: 208 GRFFEAMELFSRMQEEGIKPSEFTMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIVI 267
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
A+IDMY KCG ++KA +VF +K W ++I+GLA+SG G+ A+ +FS++ ++++
Sbjct: 268 TAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSNLK 327
Query: 160 LDEVTYVGVLSACTH 174
D V+++GVL+AC H
Sbjct: 328 PDHVSFIGVLTACNH 342
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 89/215 (41%), Gaps = 55/215 (25%)
Query: 14 KDVISWTTIVSGYINR-GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
KD I+ + +++ + G ++ A F Q+ + +W +I G+ + + A++LF +
Sbjct: 26 KDTIAASRVLAFCTSPAGDINYAYLVFTQIRNPNLFVWNTIIRGFSQSSTPHNAISLFID 85
Query: 73 M----QTSNIRRDEFTTV------------------RILTT-FNNDIFVGIALIDMYCKC 109
M T+ +R + +V R++ ND F+ +++MY C
Sbjct: 86 MMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLHGRVIKLGLENDQFIQNTILNMYVNC 145
Query: 110 GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDT------------------------ 145
G + +AQR+F D TW MI+GLA G D
Sbjct: 146 GFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGEIDKSRRLFDKMLLRNTVSWNSMISGYV 205
Query: 146 -------ALDMFSQMLRASIRLDEVTYVGVLSACT 173
A+++FS+M I+ E T V +L+AC
Sbjct: 206 RKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNACA 240
>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats.
Identities = 66/176 (37%), Positives = 101/176 (57%), Gaps = 21/176 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+ ++ Y G +AR F +MPE++ W MI+G++ + + EAL+LF EMQ S ++
Sbjct: 277 SALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVK 336
Query: 80 RDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVEKAQRV 118
D+ T +L + D+ +G AL+DMY KCG +E A RV
Sbjct: 337 GDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRV 396
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
F +M KD TWTA+IVGLA+ G G AL++F +M + ++ D +T+VGVL+AC+H
Sbjct: 397 FQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSH 452
Score = 92.0 bits (227), Expect = 9e-17, Method: Composition-based stats.
Identities = 55/175 (31%), Positives = 90/175 (51%), Gaps = 21/175 (12%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
T+++ Y N G + AR+ F +M + V W MI Y + + EA+ LFR M+ ++++
Sbjct: 177 TLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKP 236
Query: 81 DEFTTVRILTT---------------FNNDIFVGI------ALIDMYCKCGDVEKAQRVF 119
+E T V +LT + ++ +G AL+D+YCKCG A+ +F
Sbjct: 237 NEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLF 296
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
KM K+ F W MI G + AL +F++M + ++ D+VT +L ACTH
Sbjct: 297 NKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTH 351
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 18/166 (10%)
Query: 28 NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVR 87
+ G + AR F Q+P ++I GY N R+A+ ++ M + D FT
Sbjct: 86 DSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPS 145
Query: 88 ILTT------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT 129
+ + F +D ++ L++MY CG + A++VF KM+ K +
Sbjct: 146 LFKSCGVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVS 205
Query: 130 WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
W MI A A+ +F +M AS++ +E+T V VL+AC +
Sbjct: 206 WATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARS 251
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 23/151 (15%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV T +V Y G ++ A + F +MPE+D + WTA+I G + +AL LF EMQ
Sbjct: 373 DVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQ 432
Query: 75 TSNIRRDEFTTVRILTTFNNDIFV--GIA--------------------LIDMYCKCGDV 112
S ++ D T V +L ++ V GIA ++DM + G +
Sbjct: 433 MSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRI 492
Query: 113 EKAQRVFWKM-LRKDKFTWTAMIVGLAISGH 142
+A+ + M + D F ++ I G+
Sbjct: 493 AEAEDLIQNMPMAPDYFVLVGLLSACRIHGN 523
>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 616
Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats.
Identities = 72/195 (36%), Positives = 110/195 (56%), Gaps = 23/195 (11%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A +F M N+DV+SW ++++GY+ G++++A++ F M ++D V WT+MI Y++
Sbjct: 162 LARRVFDRMPNRDVVSWNSMIAGYLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQNRC 221
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTFN-----------------NDI-----FVGI 100
+AL LFREM + +R D V +L+ N I F+G
Sbjct: 222 PMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGS 281
Query: 101 ALIDMYCKCGDVEKAQRVFWKML-RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMY KCG +E A VF + R++ W +MI GLAI G ALD+F +M R I
Sbjct: 282 ALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIE 341
Query: 160 LDEVTYVGVLSACTH 174
+E+T++G+LS C+H
Sbjct: 342 PNEITFLGLLSTCSH 356
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 33/172 (19%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-----QTSNIRRDEFT 84
G +D A F+++ + ++ A+I G+ + E+L L+ M +S + EF+
Sbjct: 55 GGLDYASSVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGV---EFS 111
Query: 85 TVRIL---------------------TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+L T D FVG +++ MY G++E A+RVF +M
Sbjct: 112 IPSVLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMP 171
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
+D +W +MI G +G + A +F M D VT+ ++SA N
Sbjct: 172 NRDVVSWNSMIAGYLKAGEIELAKKVFETMSDK----DVVTWTSMISAYVQN 219
>gi|225423493|ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 536
Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats.
Identities = 64/190 (33%), Positives = 107/190 (56%), Gaps = 21/190 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
IF M +SWT ++SGY G V+ AR F + P +D +W ++I GY++ N F+E
Sbjct: 162 IFDEMPWHTAVSWTVMISGYAKVGDVETARMLFDEAPMKDRGIWGSIISGYVQNNCFKEG 221
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDM 105
L +FR MQ++ + DE V IL + + + LIDM
Sbjct: 222 LQMFRLMQSTGLEPDEAILVSILCACAHLGAMEIGVWVHRYLDQLGHPLSVRLSTGLIDM 281
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y KCG ++ A+++F M ++D W AMI G+A++G GD AL +FS+M +A ++ D++T+
Sbjct: 282 YAKCGSLDIAKKLFDGMSQRDTICWNAMISGMAMNGDGDNALRLFSEMEKAGVKPDDITF 341
Query: 166 VGVLSACTHN 175
+ + +AC+++
Sbjct: 342 IAIFTACSYS 351
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 45/197 (22%), Positives = 68/197 (34%), Gaps = 52/197 (26%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G + A + F Q+ + MI ++ + + ++ +M + + D +T +L
Sbjct: 53 GSLPHAWKLFQQIQHPTICICNTMIKAFVLKGKLINTIQIYSQMLENGLYPDNYTLPYVL 112
Query: 90 TT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
F DIFVG LI MY G+V A+ +F +M
Sbjct: 113 KACAGLQSCHLGESAHGQSVKLGFWFDIFVGNTLIAMYSSFGNVRAARCIFDEMPWHTAV 172
Query: 129 TWTAMIVGLAISGHGDTA-------------------------------LDMFSQMLRAS 157
+WT MI G A G +TA L MF M
Sbjct: 173 SWTVMISGYAKVGDVETARMLFDEAPMKDRGIWGSIISGYVQNNCFKEGLQMFRLMQSTG 232
Query: 158 IRLDEVTYVGVLSACTH 174
+ DE V +L AC H
Sbjct: 233 LEPDEAILVSILCACAH 249
>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats.
Identities = 66/194 (34%), Positives = 110/194 (56%), Gaps = 23/194 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M ++DV++WT ++ Y G +D A + F +P +D V WT+M+ GY +
Sbjct: 163 ARKVFDEMPHRDVVTWTELIVAYARSGDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMP 222
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTF-----------------------NNDIFVGI 100
++AL FR+M+ + + DE T V ++ +++FVG
Sbjct: 223 KKALQFFRKMREAGVVTDEITLVGAISACAQLGVSGYADWIREIAESSRFGSGSNVFVGS 282
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
ALIDMY KCG+VE+A VF M + F++++MIVG A+ G +A+ +F +ML I+
Sbjct: 283 ALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMIVGFAVHGRARSAIKLFYEMLENGIKP 342
Query: 161 DEVTYVGVLSACTH 174
+ VT+VG+ +AC+H
Sbjct: 343 NHVTFVGLFTACSH 356
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 50/185 (27%), Positives = 78/185 (42%), Gaps = 49/185 (26%)
Query: 39 FAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT------- 91
F+Q+ + L++A+I Y R F ++ L+ M +N+ FT + +
Sbjct: 69 FSQVHSPNPFLYSALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFSLLKNPSLG 128
Query: 92 -----------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAIS 140
F ND++VG +I MY K G ++ A++VF +M +D TWT +IV A S
Sbjct: 129 SQLHLHAFLFGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARS 188
Query: 141 GHGDT-------------------------------ALDMFSQMLRASIRLDEVTYVGVL 169
G D+ AL F +M A + DE+T VG +
Sbjct: 189 GDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAI 248
Query: 170 SACTH 174
SAC
Sbjct: 249 SACAQ 253
>gi|357113878|ref|XP_003558728.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 532
Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats.
Identities = 70/194 (36%), Positives = 106/194 (54%), Gaps = 23/194 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F KD +SW +++ Y RG++ AR F ++PERD V W AMI G++R
Sbjct: 197 ARKLFDECPVKDHVSWNVMITAYAKRGEMAPARVLFNRIPERDVVSWNAMISGHVRCGSH 256
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNND-----------------------IFVGI 100
A+ LF +MQ + D T + +L+ + + +G
Sbjct: 257 VYAMELFEQMQRMGQKPDVVTMLSLLSACADSGDIDVGRRLHSSLSEMFLRTGFTVILGN 316
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
ALIDMY KCG ++ A +VFW M KD TW ++I GLA+ GH ++D+F +ML+ +R
Sbjct: 317 ALIDMYAKCGSMKSALQVFWVMRDKDVSTWNSIIGGLALHGHVLESIDVFKKMLKEKVRP 376
Query: 161 DEVTYVGVLSACTH 174
DE+T+V VL AC+H
Sbjct: 377 DEITFVAVLIACSH 390
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/149 (26%), Positives = 61/149 (40%), Gaps = 25/149 (16%)
Query: 29 RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM----QTSNIRRDEFT 84
RG + A F Q+P D ++ +I G R+A++L+ M +R D+ T
Sbjct: 55 RGAIAHAYLVFDQIPRPDLFMYNTLIRGAAHTAAPRDAVSLYARMARRGSCGGVRPDKIT 114
Query: 85 ---TVRILTTF------------------NNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+R T +D FV ALI M+ CG++ A +F
Sbjct: 115 FPFVLRACTAMGAGGTGAQVHAHVVKAGCESDAFVRNALIGMHASCGELGVASALFDGRA 174
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
R+D W+AMI G A G A +F +
Sbjct: 175 REDAVAWSAMITGCARRGDIVAARKLFDE 203
>gi|224134663|ref|XP_002327460.1| predicted protein [Populus trichocarpa]
gi|222836014|gb|EEE74435.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 111/194 (57%), Gaps = 21/194 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +F +DV++WT ++SGY+N GQV IAR+ F +MPE++ V W A+I GY+R+
Sbjct: 163 MDLARNMFDMSIKRDVVTWTCLISGYLNSGQVLIARELFDRMPEKNPVSWGALIAGYVRI 222
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
F+EAL +F +MQ S R + + V LT + D +G
Sbjct: 223 GFFKEALEVFYDMQVSGFRLNRASIVGALTACAFLGALDQGRWIHAYVKRHHMSLDRMLG 282
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMY KCG +E A VF +M +D + +T +I GLA + A+D+F++M +
Sbjct: 283 TALIDMYAKCGCIEMACSVFDEMDDRDVYAFTCLISGLANHDKSEAAIDLFNRMQDEGVV 342
Query: 160 LDEVTYVGVLSACT 173
+EVT+V VL+AC+
Sbjct: 343 PNEVTFVCVLNACS 356
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 80/192 (41%), Gaps = 21/192 (10%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYV----LWTAMIDGYL 58
+A +F ++NK W T++ ++ + + A + M E +Y+ ++ +I +
Sbjct: 64 YAERLFLCLQNKSTFIWNTMMQAFVEKNEAVRAFSLYKHMLESNYLPNNFTFSFVIRACI 123
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIA----------------- 101
V + L ++ +F ++ + N F+ +A
Sbjct: 124 DVFNLQMGLCFHGQVVKFGWESYDFVQNGLIHLYANCGFMDLARNMFDMSIKRDVVTWTC 183
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LI Y G V A+ +F +M K+ +W A+I G G AL++F M + RL+
Sbjct: 184 LISGYLNSGQVLIARELFDRMPEKNPVSWGALIAGYVRIGFFKEALEVFYDMQVSGFRLN 243
Query: 162 EVTYVGVLSACT 173
+ VG L+AC
Sbjct: 244 RASIVGALTACA 255
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 24/164 (14%)
Query: 14 KDVISWTTIVSGYIN---RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 70
KD + I+S + + R + A + F + + +W M+ ++ N A +L+
Sbjct: 41 KDPYAAAKIISLHAHSNARSSLFYAERLFLCLQNKSTFIWNTMMQAFVEKNEAVRAFSLY 100
Query: 71 REMQTSNIRRDEFT------------TVRILTTFNNDI---------FVGIALIDMYCKC 109
+ M SN + FT +++ F+ + FV LI +Y C
Sbjct: 101 KHMLESNYLPNNFTFSFVIRACIDVFNLQMGLCFHGQVVKFGWESYDFVQNGLIHLYANC 160
Query: 110 GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
G ++ A+ +F +++D TWT +I G SG A ++F +M
Sbjct: 161 GFMDLARNMFDMSIKRDVVTWTCLISGYLNSGQVLIARELFDRM 204
>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 586
Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 107/196 (54%), Gaps = 22/196 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ A ++F KD +SW TI++GY G++++A F Q+P RD V W ++I GY +
Sbjct: 215 LKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQN 274
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVG 99
+ LF M N++ D+ T V +++ + F G
Sbjct: 275 GDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSG 334
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMYCKCG +E+A +F ++ KD TWT MI G A G G+ AL++FS M +A +
Sbjct: 335 SALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVM-QAETK 393
Query: 160 LDEVTYVGVLSACTHN 175
++VT+V VL+AC+H+
Sbjct: 394 PNDVTFVSVLAACSHS 409
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 84/168 (50%), Gaps = 22/168 (13%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+FG + ++ + +++ Y++ G + ARQ F +M +R+ V + MI G+ +V
Sbjct: 90 VFGLLSKEEYLR-NSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGI 148
Query: 67 LTLFREMQTSNIRRDEFTTVRIL--------TTFNNDIFVGI-------------ALIDM 105
L LF +M++ + D+FT + +L T + I AL+DM
Sbjct: 149 LELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDM 208
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
Y KC +++ A++VF + KD +W +I G A G + A D+F+Q+
Sbjct: 209 YVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQI 256
>gi|255586679|ref|XP_002533966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526049|gb|EEF28413.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 515
Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 105/193 (54%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F M NKDV+SW T+++GY N G ++ + F +MPER+ W +I GY F
Sbjct: 280 AQELFHKMPNKDVMSWNTLLNGYANGGDIEACERLFEEMPERNVFSWNGLIGGYAHHGCF 339
Query: 64 REALTLFREMQTSNIR-RDEFTTVRILTT---------------------FNNDIFVGIA 101
E L+ F+ M I ++ T V +L+ + ++++G A
Sbjct: 340 LEVLSSFKRMLVDGIVVPNDATLVTVLSACARLGALDLGKWVHMYAQSNGYKGNVYIGNA 399
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMY KCG+VE A VF + +KD +W +I GLA+ G AL +FS+M A + D
Sbjct: 400 LIDMYAKCGNVENAIVVFKSLDKKDLISWNTLIGGLAVHGRAADALYLFSRMKDAGEKPD 459
Query: 162 EVTYVGVLSACTH 174
+T++GVL ACTH
Sbjct: 460 GITFLGVLCACTH 472
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 85/171 (49%), Gaps = 19/171 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +FG M ++V++WT+++ G+I ++ AR+ F P+RD VLW MI GY+ +
Sbjct: 218 AYRVFGEMIERNVVAWTSMIKGFILCNDIETARRLFELAPQRDVVLWNIMISGYIDIGDL 277
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
A LF +M N D+ L++ Y GD+E +R+F +M
Sbjct: 278 VRAQELFHKMP------------------NKDVMSWNTLLNGYANGGDIEACERLFEEMP 319
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL-DEVTYVGVLSACT 173
++ F+W +I G A G L F +ML I + ++ T V VLSAC
Sbjct: 320 ERNVFSWNGLIGGYAHHGCFLEVLSSFKRMLVDGIVVPNDATLVTVLSACA 370
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 21/137 (15%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFT-------TVR 87
A + F Q+PE + W AM+ GY + RE + LFR+M + +I + F+ +V+
Sbjct: 117 AHKLFDQIPEPNVSNWNAMLKGYSLNDSHREVIVLFRKMISMDILPNCFSFPIVIKSSVK 176
Query: 88 I--------LTTF------NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
I L F + FVG LID+Y + A RVF +M+ ++ WT+M
Sbjct: 177 INAFKEGEELHCFVIKSGCRANPFVGTMLIDLYSSGRMIVSAYRVFGEMIERNVVAWTSM 236
Query: 134 IVGLAISGHGDTALDMF 150
I G + +TA +F
Sbjct: 237 IKGFILCNDIETARRLF 253
>gi|226508188|ref|NP_001146230.1| uncharacterized protein LOC100279802 [Zea mays]
gi|219886289|gb|ACL53519.1| unknown [Zea mays]
Length = 537
Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats.
Identities = 70/197 (35%), Positives = 108/197 (54%), Gaps = 23/197 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A E+F KD++SW +++ Y G + AR+ F P+RD V W AMI GY+R
Sbjct: 197 IGAARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRC 256
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------FNNDIF-------- 97
++A+ LF +MQ + D T + +L+ F + F
Sbjct: 257 GSRKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFLSGRFSRIGPTTA 316
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
+G ALIDMY KCG + A VFW M K+ TW ++I GLA+ GH ++ +F +ML+ +
Sbjct: 317 LGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGN 376
Query: 158 IRLDEVTYVGVLSACTH 174
++ DE+T+V VL+AC+H
Sbjct: 377 VKPDEITFVAVLAACSH 393
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 18/158 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D ++ + G + A F D V W+AMI G+ R A LF E
Sbjct: 149 DAFVRNALIGMHATLGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAARELFDE-- 206
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
+ V+ L ++N +I Y K GD+ A+ +F +D +W AMI
Sbjct: 207 ---------SPVKDLVSWN-------VMITAYAKLGDMAPARELFDGAPDRDVVSWNAMI 250
Query: 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
G G A+++F QM + D VT + +LSAC
Sbjct: 251 SGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLSLLSAC 288
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 38/152 (25%), Positives = 59/152 (38%), Gaps = 28/152 (18%)
Query: 29 RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRI 88
RG AR F ++P D ++ +I G + R+A++++ M + D T
Sbjct: 55 RGGTAHARLVFDRIPHPDRFMYNTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPD 114
Query: 89 LTTF----------------------------NNDIFVGIALIDMYCKCGDVEKAQRVFW 120
TF +D FV ALI M+ GD+ A +F
Sbjct: 115 KRTFPFVLRACAAMGAGETGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAALFD 174
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
R+D W+AMI G A G A ++F +
Sbjct: 175 GEAREDAVAWSAMISGFARRGDIGAARELFDE 206
>gi|413956916|gb|AFW89565.1| hypothetical protein ZEAMMB73_426720 [Zea mays]
Length = 537
Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats.
Identities = 70/197 (35%), Positives = 108/197 (54%), Gaps = 23/197 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A E+F KD++SW +++ Y G + AR+ F P+RD V W AMI GY+R
Sbjct: 197 IGAARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRC 256
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------FNNDIF-------- 97
++A+ LF +MQ + D T + +L+ F + F
Sbjct: 257 GSRKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFLSGRFSRIGPTTA 316
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
+G ALIDMY KCG + A VFW M K+ TW ++I GLA+ GH ++ +F +ML+ +
Sbjct: 317 LGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGN 376
Query: 158 IRLDEVTYVGVLSACTH 174
++ DE+T+V VL+AC+H
Sbjct: 377 VKPDEITFVAVLAACSH 393
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 18/158 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D ++ + G + A F D V W+AMI G+ R A LF E
Sbjct: 149 DAFVRNALIGMHATLGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAARELFDE-- 206
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
+ V+ L ++N +I Y K GD+ A+ +F +D +W AMI
Sbjct: 207 ---------SPVKDLVSWN-------VMITAYAKLGDMAPARELFDGAPDRDVVSWNAMI 250
Query: 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
G G A+++F QM + D VT + +LSAC
Sbjct: 251 SGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLSLLSAC 288
Score = 45.4 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 38/152 (25%), Positives = 59/152 (38%), Gaps = 28/152 (18%)
Query: 29 RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRI 88
RG AR F ++P D ++ +I G + R+A++++ M + D T
Sbjct: 55 RGGTAHARLVFDRIPHPDRFMYNTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPD 114
Query: 89 LTTF----------------------------NNDIFVGIALIDMYCKCGDVEKAQRVFW 120
TF +D FV ALI M+ GD+ A +F
Sbjct: 115 KRTFPFVLRACAAMGAGETGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAALFD 174
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
R+D W+AMI G A G A ++F +
Sbjct: 175 GEAREDAVAWSAMISGFARRGDIGAARELFDE 206
>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
Length = 663
Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 103/176 (58%), Gaps = 5/176 (2%)
Query: 3 FALEIFGNMKNKDVISW----TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYL 58
+A +F M +DV+SW T ++ Y G + +ARQ F + ++ V WTAMI G +
Sbjct: 212 YARLVFDKMMERDVVSWIPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCI 271
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
R NR E LF MQ NI +E T + D + AL+DMY KCGD+ A R+
Sbjct: 272 RSNRLEEGTKLFIRMQEENIFPNEITMLN-KERVEVDCILNTALVDMYAKCGDINAAGRL 330
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
F + + +D W A+I G A+ G+G+ ALD+F++M R ++ +++T++G+L AC+H
Sbjct: 331 FIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSH 386
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 74/168 (44%), Gaps = 36/168 (21%)
Query: 37 QYFAQMPERDY-------VLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
+ Q+P D+ W +I Y + N+ R AL ++ +++ + D F +L
Sbjct: 107 HHALQIPLNDFPSGLSPSAQWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVL 166
Query: 90 TT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
+ D+FVG AL+ MY +C VE A+ VF KM+ +D
Sbjct: 167 KACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVV 226
Query: 129 TW----TAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+W TA++ A GH A +F+ + + ++ V++ +++ C
Sbjct: 227 SWIPTTTALLDMYAKCGHLGLARQLFNGLTQKTV----VSWTAMIAGC 270
>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 107/196 (54%), Gaps = 22/196 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ A ++F KD +SW TI++GY G++++A F Q+P RD V W ++I GY +
Sbjct: 280 LKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQN 339
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVG 99
+ LF M N++ D+ T V +++ + F G
Sbjct: 340 GDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSG 399
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMYCKCG +E+A +F ++ KD TWT MI G A G G+ AL++FS M +A +
Sbjct: 400 SALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVM-QAETK 458
Query: 160 LDEVTYVGVLSACTHN 175
++VT+V VL+AC+H+
Sbjct: 459 PNDVTFVSVLAACSHS 474
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 84/168 (50%), Gaps = 22/168 (13%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+FG + ++ + +++ Y++ G + ARQ F +M +R+ V + MI G+ +V
Sbjct: 155 VFGLLSKEEYLR-NSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGI 213
Query: 67 LTLFREMQTSNIRRDEFTTVRIL--------TTFNNDIFVGI-------------ALIDM 105
L LF +M++ + D+FT + +L T + I AL+DM
Sbjct: 214 LELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDM 273
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
Y KC +++ A++VF + KD +W +I G A G + A D+F+Q+
Sbjct: 274 YVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQI 321
>gi|449469438|ref|XP_004152427.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 528
Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 103/189 (54%), Gaps = 21/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F KDV+ WT +V GY G ++ AR F +MPER+ + W+AM+ Y RV+ FRE
Sbjct: 168 LFDKSSGKDVVVWTVMVDGYGKVGDIESARVLFDEMPERNVISWSAMMAAYSRVSDFREV 227
Query: 67 LTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDM 105
L LFR+MQ NI ++ +LT +++ + AL+DM
Sbjct: 228 LCLFRQMQKKNIVPNDSVIASVLTACAHLGAITQGLWMHSYAKRYGLDSNPILATALVDM 287
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y KCG +E A VF + KD W AMI G A++G+ +L++F +M+ + + E T+
Sbjct: 288 YSKCGYIESALEVFEGISNKDAGAWNAMISGFAMTGNVVKSLELFDKMIASGTQATEATF 347
Query: 166 VGVLSACTH 174
V +L+ACTH
Sbjct: 348 VSILAACTH 356
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/208 (19%), Positives = 85/208 (40%), Gaps = 50/208 (24%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
+A IF N++ +++ + +++ GY + ++ P++ + + ++D N+
Sbjct: 62 YACGIFKNLQQRNIFMYNSMIRGY-----------FLSRFPKQAILCYLDLMDRGFLANK 110
Query: 63 F------REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIAL-------------- 102
+ + ++RE++ I+ + ND FV AL
Sbjct: 111 YTFPPLIKACALVYRELKRIGYLVHAHV---IVLGYENDAFVVSALVEFYSLFDLKVARV 167
Query: 103 ----------------IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTA 146
+D Y K GD+E A+ +F +M ++ +W+AM+ +
Sbjct: 168 LFDKSSGKDVVVWTVMVDGYGKVGDIESARVLFDEMPERNVISWSAMMAAYSRVSDFREV 227
Query: 147 LDMFSQMLRASIRLDEVTYVGVLSACTH 174
L +F QM + +I ++ VL+AC H
Sbjct: 228 LCLFRQMQKKNIVPNDSVIASVLTACAH 255
>gi|414879991|tpg|DAA57122.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 868
Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats.
Identities = 69/193 (35%), Positives = 110/193 (56%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M K+V+SW +++G+ G+V+ AR F QMP R+ V WT +IDGY R +
Sbjct: 533 ARKVFDEMPVKNVVSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLY 592
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
EALTL R M I E T + ++ +N D VG +L
Sbjct: 593 AEALTLLRHMMAGGISPSEITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSL 652
Query: 103 IDMYCKCGDVEKAQRVFWKML-RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
ID+Y K G V+ + +VF +ML R++ +WT++I G A+ G AL++F++M RA I+ +
Sbjct: 653 IDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPN 712
Query: 162 EVTYVGVLSACTH 174
+T++ V++AC+H
Sbjct: 713 RITFLSVINACSH 725
>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 1467
Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats.
Identities = 69/193 (35%), Positives = 110/193 (56%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M K+V+SW +++G+ G+V+ AR F QMP R+ V WT +IDGY R +
Sbjct: 533 ARKVFDEMPVKNVVSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLY 592
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
EALTL R M I E T + ++ +N D VG +L
Sbjct: 593 AEALTLLRHMMAGGISPSEITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSL 652
Query: 103 IDMYCKCGDVEKAQRVFWKML-RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
ID+Y K G V+ + +VF +ML R++ +WT++I G A+ G AL++F++M RA I+ +
Sbjct: 653 IDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPN 712
Query: 162 EVTYVGVLSACTH 174
+T++ V++AC+H
Sbjct: 713 RITFLSVINACSH 725
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 64/192 (33%), Positives = 107/192 (55%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F MK+K+ ++ +++ Y G + A++ F Q+P +D + W++MI Y + + F
Sbjct: 1095 AEKVFSQMKDKNTVTLNAMITAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHF 1154
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTF------------------NN---DIFVGIAL 102
++L LFR+MQ + ++ D +L+ NN D + +L
Sbjct: 1155 SDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKADTIMENSL 1214
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDM+ KCG V++A +VF M KD +W ++I+GLA +G D ALD+F ML R +E
Sbjct: 1215 IDMFAKCGCVQEALQVFTDMEEKDTLSWNSIILGLANNGFEDEALDIFHSMLTEGPRPNE 1274
Query: 163 VTYVGVLSACTH 174
VT++GVL AC +
Sbjct: 1275 VTFLGVLIACAN 1286
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 61/226 (26%), Positives = 102/226 (45%), Gaps = 61/226 (26%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+GF L+IF + +++ Y G + AR F +M +D V W ++I GY +
Sbjct: 969 LGFLLDIFVS---------NSLIYLYAACGALACARSVFNEMLVKDVVSWNSLIGGYSQH 1019
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVG 99
NR +E LTLF+ MQ ++ D+ T V++++ + D+++G
Sbjct: 1020 NRLKEVLTLFKLMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIEHNHIEVDVYLG 1079
Query: 100 IALIDMYCKCGDVEKAQRVFWKML-------------------------------RKDKF 128
LID YC+ G ++ A++VF +M KD
Sbjct: 1080 NTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMITAYAKGGNLVSAKKIFDQIPNKDLI 1139
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+W++MI + + H +L++F QM RA ++ D V VLSAC H
Sbjct: 1140 SWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAH 1185
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 21/161 (13%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT--- 91
A + F Q+ LW ++ G + + ++A+ +++ Q ++ D T +L
Sbjct: 893 AHKVFKQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAK 952
Query: 92 ------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
F DIFV +LI +Y CG + A+ VF +ML KD +W ++
Sbjct: 953 TCAPKEGEQMHNHVIKLGFLLDIFVSNSLIYLYAACGALACARSVFNEMLVKDVVSWNSL 1012
Query: 134 IVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
I G + L +F M ++ D+VT V V+SACTH
Sbjct: 1013 IGGYSQHNRLKEVLTLFKLMQAEEVQADKVTMVKVISACTH 1053
>gi|297739162|emb|CBI28813.3| unnamed protein product [Vitis vinifera]
Length = 500
Score = 135 bits (339), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 99/155 (63%), Gaps = 1/155 (0%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVL-WTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
+V Y + G ++ A F + PE D V+ W+ MI+GY++ +RF+E L LF++M I
Sbjct: 213 LVQMYASCGLIESAGLVFDRTPECDDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEP 272
Query: 81 DEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAIS 140
+E V L + +G ALIDMY KCG VE+A VF KM K+ W+AMI GLAI+
Sbjct: 273 NESVLVNALKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAIN 332
Query: 141 GHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
G G AL++FSQM ++ +EVT++G+L+AC+H+
Sbjct: 333 GQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHS 367
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 44/79 (55%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T ++ Y G V+ A + F +M E++ + W+AMI+G + ++AL LF +M+ ++
Sbjct: 292 TALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVK 351
Query: 80 RDEFTTVRILTTFNNDIFV 98
+E T + IL ++ V
Sbjct: 352 PNEVTFIGILNACSHSKLV 370
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 61/164 (37%), Gaps = 23/164 (14%)
Query: 29 RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI---------- 78
G + AR F ++ + D + +I Y +A+ + EM S++
Sbjct: 118 HGSIPYARFLFYRIRKPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPL 177
Query: 79 ---RRDEFTTVRILTTFNNDIF---------VGIALIDMYCKCGDVEKAQRVFWKMLR-K 125
E ++R+ ++ +F V L+ MY CG +E A VF +
Sbjct: 178 LLKACSEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECD 237
Query: 126 DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVL 169
D +W+ MI G L +F M+ I +E V L
Sbjct: 238 DVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNAL 281
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQM 42
ALE+F MK K+V++W+ +++G GQ A F+QM
Sbjct: 307 ALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQM 345
>gi|345505204|gb|AEN99826.1| chlororespiratory reduction 4, partial [Aethionema cordifolium]
Length = 587
Score = 135 bits (339), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 111/194 (57%), Gaps = 22/194 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +DV++W T++ GY G V A+ F QMP RD V + +M+ GY++
Sbjct: 249 AKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNKYH 308
Query: 64 REALTLFREMQT-SNIRRDEFTTVRILT------------TFNNDIF---------VGIA 101
EAL +F M+ S++ DE T V +L+ + N I +G+A
Sbjct: 309 MEALEIFNNMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMNKYIVEKSFPLGGKLGVA 368
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDM+ KCG +++A VF + K W AMI GLAI GHG+ A DM Q+ R SI+ D
Sbjct: 369 LIDMHSKCGSIQQAISVFEGIKNKSIDHWNAMIGGLAIHGHGELAFDMLMQIERCSIKPD 428
Query: 162 EVTYVGVLSACTHN 175
++T++GVL+AC+H+
Sbjct: 429 DITFIGVLNACSHS 442
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 22/175 (12%)
Query: 1 MGFALEIFGNMKN--KDVISWTTIVSGYINRGQ-VDIARQYFAQMPERDYVLWTAMIDGY 57
+G A E+F M K++ISW +++SGY V+IA + FA+MPE+D + W ++IDGY
Sbjct: 181 IGSARELFDLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIDGY 240
Query: 58 LRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQR 117
++ R +A LF M RRD T +ID Y K G V KA+
Sbjct: 241 VKHGRMEDAKDLFYVMP----RRDVVTWA--------------TMIDGYAKLGFVHKAKT 282
Query: 118 VFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS-IRLDEVTYVGVLSA 171
+F +M +D + +M+ G + + AL++F+ M + S + DE T V VLSA
Sbjct: 283 LFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFNNMEKDSHLSPDETTLVIVLSA 337
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 21/138 (15%)
Query: 39 FAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFN----- 93
FA D LW A+I + + AL F M + + D+F+ +L +
Sbjct: 56 FAHGEVEDPFLWNAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFV 115
Query: 94 ----------------NDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGL 137
+D+F+ LI +Y KCG + A+++F +M ++D ++ +MI G
Sbjct: 116 QEGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGY 175
Query: 138 AISGHGDTALDMFSQMLR 155
G +A ++F M +
Sbjct: 176 VKCGLIGSARELFDLMPK 193
>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 109/196 (55%), Gaps = 24/196 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +DVISWT +++ Y G ++ A + F +P +D V WTAM+ G+ + +
Sbjct: 203 ARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKP 262
Query: 64 REALTLFREMQTSNIRRDEFTTVRILT-----------------------TFNNDIFVGI 100
+EAL F M+ S IR DE T ++ + ++ + +G
Sbjct: 263 QEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGS 322
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML-RASIR 159
ALIDMY KCG+VE+A VF M K+ FT+++MI+GLA G AL +F M+ + I+
Sbjct: 323 ALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIK 382
Query: 160 LDEVTYVGVLSACTHN 175
+ VT+VG L AC+H+
Sbjct: 383 PNTVTFVGALMACSHS 398
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 78/192 (40%), Gaps = 52/192 (27%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT--- 91
AR+ + R+ LWTA+I GY +F EA+ ++ M+ I FT +L
Sbjct: 102 ARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGT 161
Query: 92 ---------FNND---------IFVGIALIDMYCKC------------------------ 109
F+ ++VG +IDMY KC
Sbjct: 162 MKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTEL 221
Query: 110 -------GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
G++E A +F + KD WTAM+ G A + AL+ F +M ++ IR DE
Sbjct: 222 IAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADE 281
Query: 163 VTYVGVLSACTH 174
VT G +SAC
Sbjct: 282 VTVAGYISACAQ 293
>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
Length = 676
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 75/191 (39%), Positives = 107/191 (56%), Gaps = 22/191 (11%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE 65
++F M +D+ SW ++SGY G + A+ F +MPERD WTAMI GY+R +R E
Sbjct: 126 KLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNE 185
Query: 66 ALTLFREMQTS-NIRRDEFTT------------VRI---------LTTFNNDIFVGIALI 103
AL LFR M+ S N + ++FT +RI T ++D V AL
Sbjct: 186 ALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALS 245
Query: 104 DMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEV 163
DMY KCG +E+A+ +F KM+ +D TWTAMI G D+F+ +LR+ IR +E
Sbjct: 246 DMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEF 305
Query: 164 TYVGVLSACTH 174
T+ GVL+AC +
Sbjct: 306 TFSGVLNACAN 316
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 63/183 (34%), Positives = 95/183 (51%), Gaps = 21/183 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ D + W+ + Y G ++ AR F +M +RD V WTAMID Y + R +E LF +
Sbjct: 235 DSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFAD 294
Query: 73 MQTSNIRRDEFTTVRILTTFNNDI---------------------FVGIALIDMYCKCGD 111
+ S IR +EFT +L N F AL+ MY KCG+
Sbjct: 295 LLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGN 354
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+ A+RVF + + D F+WT++I G A +G D A+ F ++++ + D +T+VGVLSA
Sbjct: 355 MVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSA 414
Query: 172 CTH 174
C H
Sbjct: 415 CAH 417
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 66/144 (45%), Gaps = 18/144 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQM----PERDYVLWTAMIDGYLR 59
A +F D+ SWT++++GY GQ D A +YF + + D++ + ++
Sbjct: 358 AERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAH 417
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119
+ L F + ++++ T D + I ID+ + G ++A+ +
Sbjct: 418 AGLVDKGLDYFHSI------KEQYG-----LTHTADHYACI--IDLLARSGQFDEAENII 464
Query: 120 WKM-LRKDKFTWTAMIVGLAISGH 142
KM ++ DKF W +++ G I G+
Sbjct: 465 SKMSMKPDKFLWASLLGGCRIHGN 488
Score = 39.7 bits (91), Expect = 0.43, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 89 LTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALD 148
L+ F +F+ L++MY KC + +Q++F +M +D +W +I G A G A
Sbjct: 98 LSGFVPGLFILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKS 157
Query: 149 MFSQM 153
+F +M
Sbjct: 158 LFDKM 162
>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g68930-like [Cucumis
sativus]
Length = 695
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 106/191 (55%), Gaps = 23/191 (12%)
Query: 5 LEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFR 64
+ + G+M D ++ +TI++ Y G+VD AR+ F++ E+D V WTAM+ GY + R
Sbjct: 247 MRLSGHMP--DQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREE 304
Query: 65 EALTLFREMQTSNIRRDEFTTVR---------------------ILTTFNNDIFVGIALI 103
+AL LF EM +I D +T IL NN++ V ALI
Sbjct: 305 DALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALI 364
Query: 104 DMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEV 163
DMY KCG ++ A+ VF M ++ +W AMIVG A +GH AL++F ML+ + D V
Sbjct: 365 DMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNV 424
Query: 164 TYVGVLSACTH 174
T++G+LSAC H
Sbjct: 425 TFIGILSACLH 435
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 89/189 (47%), Gaps = 21/189 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M +D SW ++S Y G + + F +MP RD V + I G+ +
Sbjct: 77 AQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCP 136
Query: 64 REALTLFREMQTSNIRRDEFTTVRILT---------------------TFNNDIFVGIAL 102
+E+L LF+ MQ E+T V IL F ++F+ AL
Sbjct: 137 QESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNAL 196
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
DMY KCG++E+A+ +F + +K+ +W MI G A +G + + + QM + D+
Sbjct: 197 TDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQ 256
Query: 163 VTYVGVLSA 171
VT +++A
Sbjct: 257 VTMSTIIAA 265
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 14/159 (8%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
+V W + Y G+++ AR F + +++ V W MI GY + + + + L +M+
Sbjct: 189 NVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMR 248
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
S D+ T I+ YC+CG V++A+RVF + KD WTAM+
Sbjct: 249 LSGHMPDQVTMSTIIAA--------------YCQCGRVDEARRVFSEFKEKDIVCWTAMM 294
Query: 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
VG A +G + AL +F++ML I D T V+S+C
Sbjct: 295 VGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCA 333
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISG 141
D F+ L+ +Y K G + AQ +F KML++D F+W A++ A SG
Sbjct: 57 DSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSG 103
>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 695
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 106/191 (55%), Gaps = 23/191 (12%)
Query: 5 LEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFR 64
+ + G+M D ++ +TI++ Y G+VD AR+ F++ E+D V WTAM+ GY + R
Sbjct: 247 MRLSGHMP--DQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREE 304
Query: 65 EALTLFREMQTSNIRRDEFTTVR---------------------ILTTFNNDIFVGIALI 103
+AL LF EM +I D +T IL NN++ V ALI
Sbjct: 305 DALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALI 364
Query: 104 DMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEV 163
DMY KCG ++ A+ VF M ++ +W AMIVG A +GH AL++F ML+ + D V
Sbjct: 365 DMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNV 424
Query: 164 TYVGVLSACTH 174
T++G+LSAC H
Sbjct: 425 TFIGILSACLH 435
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 90/189 (47%), Gaps = 21/189 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M +D+ SW ++S Y G + + F +MP RD V + I G+ +
Sbjct: 77 AQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCP 136
Query: 64 REALTLFREMQTSNIRRDEFTTVRILT---------------------TFNNDIFVGIAL 102
+E+L LF+ MQ E+T V IL F ++F+ AL
Sbjct: 137 QESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNAL 196
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
DMY KCG++E+A+ +F + +K+ +W MI G A +G + + + QM + D+
Sbjct: 197 TDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQ 256
Query: 163 VTYVGVLSA 171
VT +++A
Sbjct: 257 VTMSTIIAA 265
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 14/159 (8%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
+V W + Y G+++ AR F + +++ V W MI GY + + + + L +M+
Sbjct: 189 NVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMR 248
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
S D+ T I+ YC+CG V++A+RVF + KD WTAM+
Sbjct: 249 LSGHMPDQVTMSTIIAA--------------YCQCGRVDEARRVFSEFKEKDIVCWTAMM 294
Query: 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
VG A +G + AL +F++ML I D T V+S+C
Sbjct: 295 VGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCA 333
Score = 42.4 bits (98), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISG 141
D F+ L+ +Y K G + AQ +F KML++D F+W A++ A SG
Sbjct: 57 DSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSG 103
>gi|413943921|gb|AFW76570.1| hypothetical protein ZEAMMB73_758095 [Zea mays]
Length = 397
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 108/192 (56%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+++F M +++ISWT +VSGY GQ + AR + Q ++D +LWTAMI+ ++ F
Sbjct: 154 AVKMFEQMPERNIISWTILVSGYGITGQSNKARVLYYQCTQKDLILWTAMINACVQHGSF 213
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
EALTLF++MQ ++ D+F+ + +LT + N D L
Sbjct: 214 DEALTLFQDMQLQHVEPDKFSVITLLTCYANIGAFDQCEWIHWYAEDKNMKIDAVRDTTL 273
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
++M KCG V+K+ ++F +M KD WTA+I GL +G AL++F + R+ + D
Sbjct: 274 MEMCSKCGHVDKSLQIFRRMQGKDVVAWTAIICGLTTNGQASKALELFEEKQRSKTKPDG 333
Query: 163 VTYVGVLSACTH 174
+T+ VLSAC H
Sbjct: 334 ITFTRVLSACCH 345
>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 605
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 69/196 (35%), Positives = 106/196 (54%), Gaps = 22/196 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A ++F M +D++SW+T+V GY G +D+AR F + P ++ VLWT +I GY
Sbjct: 237 MDKAFKLFERMAERDIVSWSTMVCGYSKNGDMDMARMLFDRCPVKNLVLWTTIISGYAEK 296
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGI-------------------- 100
+ +EA+ L EM+ S +R D+ + IL +G+
Sbjct: 297 GQVKEAMNLCDEMEKSGLRLDDGFFISILAACAESGMLGLGKKMHDSFLRSRFRCSTKVL 356
Query: 101 -ALIDMYCKCGDVEKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
+ IDMY KCG V+ A RVF M KD +W +MI G I GHG+ ++++F+ M+R
Sbjct: 357 NSFIDMYAKCGCVDDAFRVFNGMKTEKDLVSWNSMIHGFGIHGHGEKSIELFNTMVREGF 416
Query: 159 RLDEVTYVGVLSACTH 174
+ D T++G+L ACTH
Sbjct: 417 KPDRYTFIGLLCACTH 432
Score = 99.4 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 50/172 (29%), Positives = 88/172 (51%), Gaps = 18/172 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+++F M+ +DV+SW ++V G + G +D A + F +MPERD V W M+DG+ +
Sbjct: 178 AMKVFSGMEERDVVSWNSMVGGLVKNGDLDGALKVFDEMPERDRVSWNTMLDGFTKAGEM 237
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+A LF M DI ++ Y K GD++ A+ +F +
Sbjct: 238 DKAFKLFERMA------------------ERDIVSWSTMVCGYSKNGDMDMARMLFDRCP 279
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
K+ WT +I G A G A+++ +M ++ +RLD+ ++ +L+AC +
Sbjct: 280 VKNLVLWTTIISGYAEKGQVKEAMNLCDEMEKSGLRLDDGFFISILAACAES 331
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 68/157 (43%), Gaps = 25/157 (15%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF---REMQTSNI 78
+++ Y + A F Q+P+ + L+ +I Y +L F +M +
Sbjct: 60 LIASYSLTNNLSSAVNVFNQVPDPNVHLYNYLIRAYSLSGNESNSLCAFGVLLKMHVDGV 119
Query: 79 RRDEFTTVRILTTFNN----------------------DIFVGIALIDMYCKCGDVEKAQ 116
D FT +L N DIFV +LID YC+CGDVE A
Sbjct: 120 LADNFTYPFLLKGCNGSSSWLSLVKMVHAHVEKLGFYWDIFVPNSLIDCYCRCGDVEMAM 179
Query: 117 RVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+VF M +D +W +M+ GL +G D AL +F +M
Sbjct: 180 KVFSGMEERDVVSWNSMVGGLVKNGDLDGALKVFDEM 216
>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
Length = 688
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 106/193 (54%), Gaps = 21/193 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A IF + K+V+SWT+++S Y G +++ARQ F QMP ++ V W +MI YLR ++
Sbjct: 315 AQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQY 374
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN--DIFVGI-------------------AL 102
REAL LF +M+ S + DE T V IL + D+ +G +L
Sbjct: 375 REALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSL 434
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG V A +F +M K+ +W +I LA+ G G A+ +F +M DE
Sbjct: 435 IDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDE 494
Query: 163 VTYVGVLSACTHN 175
+T G+LSAC+H+
Sbjct: 495 ITLTGLLSACSHS 507
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 73/185 (39%), Gaps = 64/185 (34%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
+++ Y+ G + AR+ F + ++ V W +MI
Sbjct: 254 ALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMI-------------------------- 287
Query: 81 DEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAIS 140
E T V+I DI V AL DMY KCG++ AQ +F + K+ +WT+MI A
Sbjct: 288 -EITGVKI------DIIVRNALXDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQH 340
Query: 141 GHGDT-------------------------------ALDMFSQMLRASIRLDEVTYVGVL 169
G + ALD+F++M + + DE T V +L
Sbjct: 341 GSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSIL 400
Query: 170 SACTH 174
+AC+
Sbjct: 401 AACSQ 405
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 21/128 (16%)
Query: 28 NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVR 87
+ G + A++ F Q+P+ + ++ ++I GY + +A+ LFR M S + +EFT
Sbjct: 160 DAGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPF 219
Query: 88 ILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKD 126
+L + +FV ALI +Y CG + A+++F + K
Sbjct: 220 VLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKT 279
Query: 127 KFTWTAMI 134
+W +MI
Sbjct: 280 LVSWNSMI 287
Score = 43.5 bits (101), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 40/96 (41%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
I N V + +++ Y G V A F +MP ++ V W +I EA
Sbjct: 419 ILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEA 478
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIAL 102
+ LF EMQ DE T +L+ ++ V + L
Sbjct: 479 IKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGL 514
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%)
Query: 110 GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVL 169
GD++ AQR+F ++ + +KF + ++I G + S A+ +F +M+ + + +E T VL
Sbjct: 162 GDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVL 221
Query: 170 SAC 172
AC
Sbjct: 222 KAC 224
>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
Length = 582
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 66/181 (36%), Positives = 101/181 (55%), Gaps = 21/181 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D ++ T+++ Y G++ AR F +MP R+ V W+AM++GY++ REAL +F MQ
Sbjct: 142 DASTFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQ 201
Query: 75 TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVE 113
++R D+ V +L ++F G AL+DMY KCG+V+
Sbjct: 202 AEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQ 261
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
A VF +M K+ WT MI GLA+ G G A+ +F+QM + IR D++ ++GVL ACT
Sbjct: 262 LAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACT 321
Query: 174 H 174
H
Sbjct: 322 H 322
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 90 TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDM 149
+TFN LI Y + G + A+ +F +M ++ +W+AM+ G +G G AL +
Sbjct: 144 STFNT-------LITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRI 196
Query: 150 FSQMLRASIRLDEVTYVGVLSACTHN 175
F++M +R D+ VGVL+AC +
Sbjct: 197 FARMQAEDVRPDDTVLVGVLAACAQH 222
Score = 42.0 bits (97), Expect = 0.086, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 51/126 (40%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A+++F M+ K+V++WTT++ G G R
Sbjct: 262 LAMDVFERMQYKNVLAWTTMIKGLAMHG-------------------------------R 290
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKC---GDVEKAQRVF 119
EA+ LF +M++S IR D+ IA I + C C G V+K + +F
Sbjct: 291 GSEAVMLFAQMESSGIRPDD-----------------IAFIGVLCACTHAGLVDKGRELF 333
Query: 120 WKMLRK 125
M+RK
Sbjct: 334 DSMVRK 339
>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
Length = 549
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 106/193 (54%), Gaps = 21/193 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A IF + K+V+SWT+++S Y G +++ARQ F QMP ++ V W +MI YLR ++
Sbjct: 176 AQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQY 235
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN--DIFVGI-------------------AL 102
REAL LF +M+ S + DE T V IL + D+ +G +L
Sbjct: 236 REALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSL 295
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG V A +F +M K+ +W +I LA+ G G A+ +F +M DE
Sbjct: 296 IDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDE 355
Query: 163 VTYVGVLSACTHN 175
+T G+LSAC+H+
Sbjct: 356 ITLTGLLSACSHS 368
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 86/233 (36%), Gaps = 86/233 (36%)
Query: 28 NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVR 87
+ G + A++ F Q+P+ + ++ ++I GY + +A+ LFR M S + +EFT
Sbjct: 34 DAGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPF 93
Query: 88 ILTT---------------------FNNDIFVGIALI----------------------- 103
+L + +FV ALI
Sbjct: 94 VLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKT 153
Query: 104 -----------DMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDT------- 145
DMY KCG++ AQ +F + K+ +WT+MI A G +
Sbjct: 154 LIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQ 213
Query: 146 ------------------------ALDMFSQMLRASIRLDEVTYVGVLSACTH 174
ALD+F++M + + DE T V +L+AC+
Sbjct: 214 MPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQ 266
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 40/96 (41%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
I N V + +++ Y G V A F +MP ++ V W +I EA
Sbjct: 280 ILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEA 339
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIAL 102
+ LF EMQ DE T +L+ ++ V + L
Sbjct: 340 IKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGL 375
>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
Length = 572
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 71/195 (36%), Positives = 105/195 (53%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +++ M KD++S T +V GY + +IAR F MPE+D V W+AMI GY
Sbjct: 222 MEMAEKLYNGMPRKDLVSSTAMVFGYARNRKFEIARYIFDGMPEKDVVSWSAMISGYADS 281
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
N+ EAL+LF +MQ IR DE T + +++ N + +
Sbjct: 282 NQPNEALSLFNDMQECGIRPDEVTMLSVISACANLGSLDKAKWIHAFIKNNGLNKILHIC 341
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDM+ KCG + A +F +M +K+ TWT+MI A+ G G +AL +F QM +
Sbjct: 342 NALIDMFAKCGGINLALNIFNEMPQKNVITWTSMITAFAMHGDGKSALCLFEQMRNEGVE 401
Query: 160 LDEVTYVGVLSACTH 174
+EVT++ +L AC H
Sbjct: 402 PNEVTFLNLLYACCH 416
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 60/207 (28%), Positives = 89/207 (42%), Gaps = 52/207 (25%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T +V Y G V AR+ F M RD V W M+D Y + ++EAL F +M+ S +
Sbjct: 109 TALVGAYAACGCVGDARKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLQFAKMKNSGVL 168
Query: 80 RDEFTTVRILTT-----------------FNNDIFVGI----ALIDMYCKCGDVEKAQRV 118
D+ +L+ +DI + ALI++Y C +E A+++
Sbjct: 169 SDQLILATVLSACGHIRHLRTGKSIHSYMLVSDILINAHLSSALINLYASCASMEMAEKL 228
Query: 119 FWKMLRKD---------------KF----------------TWTAMIVGLAISGHGDTAL 147
+ M RKD KF +W+AMI G A S + AL
Sbjct: 229 YNGMPRKDLVSSTAMVFGYARNRKFEIARYIFDGMPEKDVVSWSAMISGYADSNQPNEAL 288
Query: 148 DMFSQMLRASIRLDEVTYVGVLSACTH 174
+F+ M IR DEVT + V+SAC +
Sbjct: 289 SLFNDMQECGIRPDEVTMLSVISACAN 315
Score = 48.9 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 42/81 (51%)
Query: 94 NDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+D FV AL+ Y CG V A++VF M +D +W M+ + + AL F++M
Sbjct: 103 DDGFVRTALVGAYAACGCVGDARKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLQFAKM 162
Query: 154 LRASIRLDEVTYVGVLSACTH 174
+ + D++ VLSAC H
Sbjct: 163 KNSGVLSDQLILATVLSACGH 183
>gi|356532382|ref|XP_003534752.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09410-like [Glycine max]
Length = 669
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 111/192 (57%), Gaps = 18/192 (9%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A + F M KD+ +WT +++ ++ G +D AR+ F Q+PE++ W MIDGY R
Sbjct: 298 IGIARKYFDLMPYKDMAAWTAMITACVDEGLMDEARKLFDQIPEKNVGSWNTMIDGYARN 357
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT------------------FNNDIFVGIAL 102
+ EAL LF M S R +E T ++T+ F ++ ++ AL
Sbjct: 358 SYVGEALNLFVLMLRSCFRPNETTMTSVVTSCDGMVELMQAHAMVIHLGFEHNTWLTNAL 417
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I +Y K GD+ A+ VF ++ KD +WTAMIV + GHG AL +F++ML + I+ DE
Sbjct: 418 ITLYSKSGDLCSARLVFEQLKSKDVVSWTAMIVAYSNHGHGHHALQVFARMLVSGIKPDE 477
Query: 163 VTYVGVLSACTH 174
VT+VG+LSAC+H
Sbjct: 478 VTFVGLLSACSH 489
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 98/213 (46%), Gaps = 44/213 (20%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
AL +F M ++V+SWT +V G+ G +D A ++F MPE++ + WTAM+ YL F
Sbjct: 177 ALHLFDQMPERNVVSWTMVVLGFARNGLMDHAGRFFYLMPEKNIIAWTAMVKAYLDNGCF 236
Query: 64 REALTLFREMQTSNIR---------------------------RDEFTTVRILTTFNNDI 96
EA LF EM N+R R+ + +++ +
Sbjct: 237 SEAYKLFLEMPERNVRSWNIMISGCLRANRVDEAIGLFESMPDRNHVSWTAMVSGLAQNK 296
Query: 97 FVGI-----------------ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAI 139
+GI A+I G +++A+++F ++ K+ +W MI G A
Sbjct: 297 MIGIARKYFDLMPYKDMAAWTAMITACVDEGLMDEARKLFDQIPEKNVGSWNTMIDGYAR 356
Query: 140 SGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+ + AL++F MLR+ R +E T V+++C
Sbjct: 357 NSYVGEALNLFVLMLRSCFRPNETTMTSVVTSC 389
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 67/125 (53%), Gaps = 18/125 (14%)
Query: 29 RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRI 88
G++D AR+ F +MP+RD V + +MI YL+ EA T+F+EM N+ +
Sbjct: 78 HGKLDEARKLFDEMPQRDDVSYNSMIAVYLKNKDLLEAETVFKEMPQRNVVAES------ 131
Query: 89 LTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALD 148
A+ID Y K G ++ A++VF M +++ F+WT++I G G + AL
Sbjct: 132 ------------AMIDGYAKVGRLDDARKVFDNMTQRNAFSWTSLISGYFSCGKIEEALH 179
Query: 149 MFSQM 153
+F QM
Sbjct: 180 LFDQM 184
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 75/155 (48%), Gaps = 18/155 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +D +S+ ++++ Y+ + A F +MP+R+ V +AMIDGY +V R
Sbjct: 84 ARKLFDEMPQRDDVSYNSMIAVYLKNKDLLEAETVFKEMPQRNVVAESAMIDGYAKVGRL 143
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+A +F M N F +LI Y CG +E+A +F +M
Sbjct: 144 DDARKVFDNMTQRN------------------AFSWTSLISGYFSCGKIEEALHLFDQMP 185
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
++ +WT +++G A +G D A F M +I
Sbjct: 186 ERNVVSWTMVVLGFARNGLMDHAGRFFYLMPEKNI 220
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 18/165 (10%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M ++V++ + ++ GY G++D AR+ F M +R+ WT++I GY + EA
Sbjct: 118 VFKEMPQRNVVAESAMIDGYAKVGRLDDARKVFDNMTQRNAFSWTSLISGYFSCGKIEEA 177
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKD 126
L LF +M N+ +T V +G A + G ++ A R F+ M K+
Sbjct: 178 LHLFDQMPERNVV--SWTMV----------VLGFA------RNGLMDHAGRFFYLMPEKN 219
Query: 127 KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
WTAM+ +G A +F +M ++R + G L A
Sbjct: 220 IIAWTAMVKAYLDNGCFSEAYKLFLEMPERNVRSWNIMISGCLRA 264
>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
[Vitis vinifera]
Length = 603
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 65/183 (35%), Positives = 99/183 (54%), Gaps = 21/183 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
++DV+ T ++ Y G ++ A + F +MP RD V W +MI Y + EAL ++ +
Sbjct: 158 DQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQ 217
Query: 73 MQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGD 111
M+ SN+ D FT V +L++ +IFVG ALIDMY KCG
Sbjct: 218 MRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGS 277
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+ A +F M ++D FTW +MIVG + G GD A+ F ML A +R + +T++G+L
Sbjct: 278 LASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCG 337
Query: 172 CTH 174
C+H
Sbjct: 338 CSH 340
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 29/176 (16%)
Query: 23 VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR--FREALTLFREM-QTSNIR 79
VSG + Q+ R + Q P W +MI G+ + +A+ + M S+ R
Sbjct: 69 VSGSLAYAQLVFHRIHNPQTPA-----WNSMIRGFSQSPSPLQLQAIVFYNHMLSASHAR 123
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
D +T +L ++ D+ + LI Y G +E A +V
Sbjct: 124 PDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKV 183
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
F +M +D +W +MI +G + AL M+ QM +++ D T V +LS+C H
Sbjct: 184 FEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAH 239
>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 65/183 (35%), Positives = 99/183 (54%), Gaps = 21/183 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
++DV+ T ++ Y G ++ A + F +MP RD V W +MI Y + EAL ++ +
Sbjct: 140 DQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQ 199
Query: 73 MQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGD 111
M+ SN+ D FT V +L++ +IFVG ALIDMY KCG
Sbjct: 200 MRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGS 259
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+ A +F M ++D FTW +MIVG + G GD A+ F ML A +R + +T++G+L
Sbjct: 260 LASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCG 319
Query: 172 CTH 174
C+H
Sbjct: 320 CSH 322
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 29/176 (16%)
Query: 23 VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR--FREALTLFREM-QTSNIR 79
VSG + Q+ R + Q P W +MI G+ + +A+ + M S+ R
Sbjct: 51 VSGSLAYAQLVFHRIHNPQTPA-----WNSMIRGFSQSPSPLQLQAIVFYNHMLSASHAR 105
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
D +T +L ++ D+ + LI Y G +E A +V
Sbjct: 106 PDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKV 165
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
F +M +D +W +MI +G + AL M+ QM +++ D T V +LS+C H
Sbjct: 166 FEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAH 221
>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
Length = 978
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 65/183 (35%), Positives = 99/183 (54%), Gaps = 21/183 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
++DV+ T ++ Y G ++ A + F +MP RD V W +MI Y + EAL ++ +
Sbjct: 533 DQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQ 592
Query: 73 MQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGD 111
M+ SN+ D FT V +L++ +IFVG ALIDMY KCG
Sbjct: 593 MRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGS 652
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+ A +F M ++D FTW +MIVG + G GD A+ F ML A +R + +T++G+L
Sbjct: 653 LASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCG 712
Query: 172 CTH 174
C+H
Sbjct: 713 CSH 715
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 29/176 (16%)
Query: 23 VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR--FREALTLFREM-QTSNIR 79
VSG + Q+ R + Q P W +MI G+ + +A+ + M S+ R
Sbjct: 444 VSGSLAYAQLVFHRIHNPQTPA-----WNSMIRGFSQSPSPLQLQAIVFYNHMLSASHAR 498
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
D +T +L ++ D+ + LI Y G +E A +V
Sbjct: 499 PDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKV 558
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
F +M +D +W +MI +G + AL M+ QM +++ D T V +LS+C H
Sbjct: 559 FEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAH 614
>gi|413922815|gb|AFW62747.1| hypothetical protein ZEAMMB73_141955 [Zea mays]
Length = 301
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 104/195 (53%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +++ M KD++S T +VS Y +V+IAR F MPE+D V W+AMI GY+
Sbjct: 61 MEMAEKLYNEMPRKDLVSSTAMVSRYARNRKVEIARSIFDGMPEKDVVSWSAMISGYVDS 120
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
N+ EAL+LF MQ IR DE T + +++ N + +
Sbjct: 121 NQPNEALSLFNGMQECGIRSDEVTMLSVISACANLGSLNKAKWIHAFIKNNGLNKVLHIC 180
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDM+ KCG + A VF +M K+ TWT+MI A+ G G ++L +F QM
Sbjct: 181 NALIDMFAKCGGINLALNVFNEMPLKNVITWTSMISAFAMHGDGKSSLRLFEQMKDEGAE 240
Query: 160 LDEVTYVGVLSACTH 174
+EVT++ +L AC H
Sbjct: 241 PNEVTFLSLLYACCH 255
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 35/116 (30%)
Query: 94 NDIFVGI----ALIDMYCKCGDVEKAQRVFWKMLR------------------------- 124
+D+ +G ALI +Y C ++E A++++ +M R
Sbjct: 39 SDMIIGAHISSALISLYASCANMEMAEKLYNEMPRKDLVSSTAMVSRYARNRKVEIARSI 98
Query: 125 ------KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
KD +W+AMI G S + AL +F+ M IR DEVT + V+SAC +
Sbjct: 99 FDGMPEKDVVSWSAMISGYVDSNQPNEALSLFNGMQECGIRSDEVTMLSVISACAN 154
>gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 542
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 108/193 (55%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M KD++SW +++ Y G+++ AR+ F ++P++D V W AMI GY+
Sbjct: 198 ARQLFDEMPMKDLVSWNVMITAYAKHGEMEKARKLFDEVPKKDVVTWNAMIAGYVLSRLN 257
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN----------------------DIFVGIA 101
+EAL +F M+ R D+ T + IL+ + + + A
Sbjct: 258 KEALEMFDAMRDLGQRPDDVTMLSILSASADLGDLEIGKKIHRSIFDMCCGDLSVLLSNA 317
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMY KCG + A VF M +KD +W ++I GLA+ GH + ++++F +MLR ++ +
Sbjct: 318 LIDMYAKCGSIGNALEVFQGMRKKDTSSWNSIIGGLALHGHAEESINLFQEMLRLKMKPN 377
Query: 162 EVTYVGVLSACTH 174
E+T+V VL AC+H
Sbjct: 378 EITFVAVLVACSH 390
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 76/152 (50%), Gaps = 18/152 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T++ + N G + AR F +R+ V W+A+ GY R + A LF EM
Sbjct: 152 NTLIYFHANCGDLATARALFDASAKREVVPWSALTAGYARRGKLDVARQLFDEM------ 205
Query: 80 RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAI 139
++ L ++N +I Y K G++EKA+++F ++ +KD TW AMI G +
Sbjct: 206 -----PMKDLVSWN-------VMITAYAKHGEMEKARKLFDEVPKKDVVTWNAMIAGYVL 253
Query: 140 SGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
S AL+MF M R D+VT + +LSA
Sbjct: 254 SRLNKEALEMFDAMRDLGQRPDDVTMLSILSA 285
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 21/152 (13%)
Query: 23 VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDE 82
VS + G +D A Q FAQ+ + D +W MI G + + A++L+ +M+ +R D+
Sbjct: 54 VSAIVVSGTMDYAHQLFAQISQPDIFMWNTMIRGSAQTLKPATAVSLYTQMENRGVRPDK 113
Query: 83 FTTVRIL---------------------TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWK 121
FT +L + F ++ FV LI + CGD+ A+ +F
Sbjct: 114 FTFSFVLKACTKLSWVKLGFGIHGKVLKSGFQSNTFVRNTLIYFHANCGDLATARALFDA 173
Query: 122 MLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+++ W+A+ G A G D A +F +M
Sbjct: 174 SAKREVVPWSALTAGYARRGKLDVARQLFDEM 205
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%)
Query: 110 GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVL 169
G ++ A ++F ++ + D F W MI G A + TA+ +++QM +R D+ T+ VL
Sbjct: 61 GTMDYAHQLFAQISQPDIFMWNTMIRGSAQTLKPATAVSLYTQMENRGVRPDKFTFSFVL 120
Query: 170 SACT 173
ACT
Sbjct: 121 KACT 124
>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Cucumis sativus]
Length = 614
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 107/188 (56%), Gaps = 21/188 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F +++ D++ TT+VS G + AR F MP+RD+V W AMI GY + + REA
Sbjct: 167 VFESVQKPDLVCQTTMVSACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREA 226
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDM 105
L LF+ MQ ++ +E + + ++T + + +G AL+DM
Sbjct: 227 LNLFKLMQMDGVKVNEVSMISVVTACTHLGALDQGKWAHAYIEKNKIQMTVNLGTALVDM 286
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y KCG+V++A +VFW+M K+ +TW+ I GLA++G+G L++FS M I +E+T+
Sbjct: 287 YFKCGNVDRALKVFWEMNEKNVYTWSTAIGGLAMNGYGQKCLELFSFMKHEGIAPNEITF 346
Query: 166 VGVLSACT 173
+ VL C+
Sbjct: 347 ISVLKGCS 354
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%)
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML 154
D+ ++ KCGD+ A+ +F M ++D +W AMI G A G AL++F M
Sbjct: 175 DLVCQTTMVSACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQ 234
Query: 155 RASIRLDEVTYVGVLSACTH 174
++++EV+ + V++ACTH
Sbjct: 235 MDGVKVNEVSMISVVTACTH 254
>gi|357487459|ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355515352|gb|AES96975.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 525
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 110/191 (57%), Gaps = 22/191 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F + + +V+SW+ ++SGY G VD AR +F + PE+D +W AMI GY++ + F+E+
Sbjct: 164 VFDEIPSLNVVSWSVMISGYAKVGDVDSARLFFDEAPEKDKGIWGAMISGYVQNSCFKES 223
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNN----------------------DIFVGIALID 104
L LFR MQ ++I DE V IL+ + + + +L+D
Sbjct: 224 LYLFRLMQLTDIVPDESIFVSILSACAHLGALEIGVWIHQHLNQLKLVPLSVRLSTSLLD 283
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVT 164
MY KCG++E A+R+F M +D W AMI G+A+ G G AL +F M + ++ D++T
Sbjct: 284 MYAKCGNLELAKRLFDSMNMRDVVCWNAMISGMAMHGDGKGALKLFYDMEKVGVKPDDIT 343
Query: 165 YVGVLSACTHN 175
++ V +AC+++
Sbjct: 344 FIAVFTACSYS 354
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 78/192 (40%), Gaps = 52/192 (27%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT---T 91
A + F Q+ ++ +I +L N+F+ AL +F +M S ++ D +T +L T
Sbjct: 60 ACRVFEQIQNPTVCIYNTLIKAFLVNNKFKSALQVFVKMLQSELKPDNYTIPYVLKACGT 119
Query: 92 FNN------------------DIFVGIALIDMYC-------------------------- 107
F++ DI+VG +L+ MYC
Sbjct: 120 FHDCSFGKMIHGYSSKLGLVFDIYVGNSLMAMYCVFGDVVAARYVFDEIPSLNVVSWSVM 179
Query: 108 -----KCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
K GDV+ A+ F + KDK W AMI G + +L +F M I DE
Sbjct: 180 ISGYAKVGDVDSARLFFDEAPEKDKGIWGAMISGYVQNSCFKESLYLFRLMQLTDIVPDE 239
Query: 163 VTYVGVLSACTH 174
+V +LSAC H
Sbjct: 240 SIFVSILSACAH 251
>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
[Vitis vinifera]
Length = 836
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 106/193 (54%), Gaps = 21/193 (10%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A +F M NK V+SW ++ +G+I G V+ A + F Q+PER+ V W MI G ++ +
Sbjct: 386 MACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSL 445
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIA 101
F +A+ LFREMQ I+ D T + I + D+ + A
Sbjct: 446 FEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTA 505
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+DM+ +CGD + A +VF KM +D WTA I +A+ G+G+ A +F+QML ++ D
Sbjct: 506 LVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPD 565
Query: 162 EVTYVGVLSACTH 174
V +V VL+AC+H
Sbjct: 566 VVLFVQVLTACSH 578
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 23/180 (12%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
+DV ++ Y G +D + F M ER+ V WT++I GY R +R +EA++LF EM
Sbjct: 164 EDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEM 223
Query: 74 QTSNIRRDEFTTVRILTTFN----------------------NDIFVGIALIDMYCKCGD 111
+ IR T V +++ N + V AL+DMY KCG
Sbjct: 224 VEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVN-ALVDMYMKCGA 282
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
++ A+R+F + + ++ + ++ A G AL + +ML+ R D VT + +SA
Sbjct: 283 IDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISA 342
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 83/207 (40%), Gaps = 52/207 (25%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+V Y+ G +D A++ F + +R+ VL+ ++ Y R REAL + EM R
Sbjct: 271 NALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPR 330
Query: 80 RDEFTTVRILTTFNN--DIF-------------------VGIALIDMYCKC--------- 109
D T + ++ D+F +G +IDMY KC
Sbjct: 331 PDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRV 390
Query: 110 ----------------------GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
GDVE A VF ++ ++ W MI GL + A+
Sbjct: 391 FDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAI 450
Query: 148 DMFSQMLRASIRLDEVTYVGVLSACTH 174
++F +M I+ D VT +G+ SAC +
Sbjct: 451 ELFREMQGEGIKADRVTMMGIASACGY 477
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 26/168 (15%)
Query: 32 VDIARQYFAQMPE---RDYVLW--TAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTV 86
+D AR+ F E D L+ ++I GY REA+ L+ M + + +T
Sbjct: 76 LDYARKAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFP 135
Query: 87 RILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK 125
+L+ D+F+ LI Y +CG ++ +VF M +
Sbjct: 136 FVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSER 195
Query: 126 DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+ +WT++I G A A+ +F +M+ A IR VT V V+SAC
Sbjct: 196 NVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACA 243
>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 616
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 106/193 (54%), Gaps = 21/193 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A IF + K+V+SWT+++S Y G +++ARQ F QMP ++ V W +MI YLR ++
Sbjct: 243 AQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQY 302
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN--DIFVGI-------------------AL 102
REAL LF +M+ S + DE T V IL + D+ +G +L
Sbjct: 303 REALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSL 362
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG V A +F +M K+ +W +I LA+ G G A+ +F +M DE
Sbjct: 363 IDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDE 422
Query: 163 VTYVGVLSACTHN 175
+T G+LSAC+H+
Sbjct: 423 ITLTGLLSACSHS 435
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 91/207 (43%), Gaps = 52/207 (25%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+++ Y+ G + AR+ F + ++ V W +MI GY + ++EA LFR+M+ +
Sbjct: 127 NALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMREWGME 186
Query: 80 RDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVEKAQRV 118
D FT V +L+ + DI V AL+DMY KCG++ AQ +
Sbjct: 187 PDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAI 246
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDT-------------------------------AL 147
F + K+ +WT+MI A G + AL
Sbjct: 247 FDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREAL 306
Query: 148 DMFSQMLRASIRLDEVTYVGVLSACTH 174
D+F++M + + DE T V +L+AC+
Sbjct: 307 DLFNKMRNSRVVPDEATLVSILAACSQ 333
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 79/169 (46%), Gaps = 21/169 (12%)
Query: 28 NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVR 87
+ G + A++ F Q+P+ + ++ ++I GY + +A+ LFR M S + +EFT
Sbjct: 34 DAGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPF 93
Query: 88 ILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKD 126
+L + +FV ALI +Y CG + A+++F + K
Sbjct: 94 VLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKT 153
Query: 127 KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
+W +MI G A G+ A +F +M + D T+V +LS C+ +
Sbjct: 154 LVSWNSMIGGYAHMGNWKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQS 202
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 40/96 (41%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
I N V + +++ Y G V A F +MP ++ V W +I EA
Sbjct: 347 ILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEA 406
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIAL 102
+ LF EMQ DE T +L+ ++ V + L
Sbjct: 407 IKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGL 442
>gi|326511827|dbj|BAJ92058.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 581
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 64/177 (36%), Positives = 108/177 (61%), Gaps = 22/177 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
++++S Y GQV+ AR+ F MP+R+ V WT+MI GY ++ + +EA+ LFR+MQ + ++
Sbjct: 235 SSLISMYAKCGQVEDARRIFDGMPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVK 294
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
D+ T ++++ DI V +LIDMY KCGD++KA +
Sbjct: 295 VDDATISTVVSSCGQMGALDLGRYVHAYCDIHGLGKDISVKNSLIDMYSKCGDIKKAYDI 354
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM-LRASIRLDEVTYVGVLSACTH 174
F M+++D F+WT +I+G A +G ALD+F+QM + +E+T++GVL++C+H
Sbjct: 355 FCGMVKRDNFSWTVIIMGFAANGLSGEALDLFAQMEEEGGVMPNEITFLGVLTSCSH 411
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 12/159 (7%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D +SW TI++GYI+ G + A Q F+QM + M+D +N L +
Sbjct: 160 DTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQ-----VMLDDVTLLN------ALVACAR 208
Query: 75 TSNIRRDEFTTVRILTT-FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
T ++ + ++T F + ++G +LI MY KCG VE A+R+F M ++ WT+M
Sbjct: 209 TCMMKVGKLCHALLVTNGFEINCYMGSSLISMYAKCGQVEDARRIFDGMPDRNAVCWTSM 268
Query: 134 IVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
I G G A+ +F M A +++D+ T V+S+C
Sbjct: 269 ISGYTQLGQSKEAIKLFRDMQIAGVKVDDATISTVVSSC 307
Score = 36.2 bits (82), Expect = 5.1, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
KD+ +++ Y G + A F M +RD WT +I G+ EAL LF +M
Sbjct: 330 KDISVKNSLIDMYSKCGDIKKAYDIFCGMVKRDNFSWTVIIMGFAANGLSGEALDLFAQM 389
Query: 74 QTS-NIRRDEFTTVRILTT 91
+ + +E T + +LT+
Sbjct: 390 EEEGGVMPNEITFLGVLTS 408
>gi|345505228|gb|AEN99838.1| chlororespiratory reduction 4, partial [Matthiola incana]
Length = 584
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 113/194 (58%), Gaps = 22/194 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M KDV++W T++ GY G V A++ F +MP+RD V + +M+ GY++
Sbjct: 243 AKSLFDLMPRKDVVTWATMIDGYAKLGFVHQAKKLFDEMPQRDVVAYNSMMAGYVQNKYH 302
Query: 64 REALTLFREMQT-SNIRRDEFTTVRILTTFNN--------DIFV-------------GIA 101
EA+ +F +M+ S++ DE T V +L+ DI + G+A
Sbjct: 303 AEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNKFRLGGKLGVA 362
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LID Y KCG ++K+ RVF ++ K W AMI GLAI G G++A DM Q+ + SI+ D
Sbjct: 363 LIDTYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIEKRSIKPD 422
Query: 162 EVTYVGVLSACTHN 175
++T++GVL+AC+H+
Sbjct: 423 DITFIGVLNACSHS 436
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 91/172 (52%), Gaps = 22/172 (12%)
Query: 4 ALEIFGNM--KNKDVISWTTIVSGYI-NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
A E+F M + K++ISW ++SGY + V++A + F +MPE+D + W ++IDGY++
Sbjct: 178 ARELFDLMPREKKNLISWNCMISGYTQSEDGVNVASKLFDEMPEKDLISWNSLIDGYVKH 237
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
R +A +LF M D+ +ID Y K G V +A+++F
Sbjct: 238 RRIEDAKSLFDLMP------------------RKDVVTWATMIDGYAKLGFVHQAKKLFD 279
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS-IRLDEVTYVGVLSA 171
+M ++D + +M+ G + + A+ +F+ M + S + DE T V VLSA
Sbjct: 280 EMPQRDVVAYNSMMAGYVQNKYHAEAIGIFNDMEKESHLSPDETTLVIVLSA 331
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 83/193 (43%), Gaps = 24/193 (12%)
Query: 3 FALEIFGNMKN----KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYL 58
F +++ G ++ D+ ++ Y+ G + ARQ F +MP+RD V + +MIDGY+
Sbjct: 111 FGMQVHGFLRKTGIYSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYV 170
Query: 59 RVNRFREALTLFREMQTS-------NIRRDEFTT----VRILTTF-----NNDIFVGIAL 102
+ A LF M N +T V + + D+ +L
Sbjct: 171 KCGLIESARELFDLMPREKKNLISWNCMISGYTQSEDGVNVASKLFDEMPEKDLISWNSL 230
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
ID Y K +E A+ +F M RKD TW MI G A G A +F +M + D
Sbjct: 231 IDGYVKHRRIEDAKSLFDLMPRKDVVTWATMIDGYAKLGFVHQAKKLFDEMPQR----DV 286
Query: 163 VTYVGVLSACTHN 175
V Y +++ N
Sbjct: 287 VAYNSMMAGYVQN 299
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 76/174 (43%), Gaps = 23/174 (13%)
Query: 10 NMKNKDVISWTTIVSGYINRGQVDIARQYFAQM--PERDYVLWTAMIDGYLRVNRFREAL 67
N+ + V+S++ Y+ I +Y E D LW A+I + R AL
Sbjct: 19 NLTTRIVLSFSASRRSYLAEFARCIFHEYHVSSYSVEEDPFLWNAVIKSFSHGVDPRNAL 78
Query: 68 TLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIALIDMY 106
LF M +++ D+F+ +L T +D+F+ LI +Y
Sbjct: 79 LLFCLMIENSVSVDKFSISLVLKACSRLGFVDFGMQVHGFLRKTGIYSDLFLQNCLIGLY 138
Query: 107 CKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
KCG + A++VF +M ++D ++ +MI G G ++A ++F M R L
Sbjct: 139 LKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLMPREKKNL 192
>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 573
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 72/199 (36%), Positives = 112/199 (56%), Gaps = 28/199 (14%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F + +KD+ +W ++V+ Y G +D AR+ F +MPER+ + W+ +I+GY+ ++
Sbjct: 116 AQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKY 175
Query: 64 REALTLFREMQTSN-----IRRDEFTTVRILTTFNN---------------------DIF 97
+EAL LFREMQ +R +EFT +L+ DI
Sbjct: 176 KEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIV 235
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156
+G ALIDMY KCG +E+A+RVF + +KD ++AMI LA+ G D +FS+M +
Sbjct: 236 LGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTS 295
Query: 157 -SIRLDEVTYVGVLSACTH 174
+I + VT+VG+L AC H
Sbjct: 296 DNINPNSVTFVGILGACVH 314
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 36/121 (29%)
Query: 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF----------W----------------- 120
+L + D FV +L++MY CGD+ AQRVF W
Sbjct: 89 LLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDAR 148
Query: 121 ----KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML-----RASIRLDEVTYVGVLSA 171
+M ++ +W+ +I G + G ALD+F +M A +R +E T VLSA
Sbjct: 149 KLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSA 208
Query: 172 C 172
C
Sbjct: 209 C 209
>gi|345505220|gb|AEN99834.1| chlororespiratory reduction 4 [Draba nemorosa]
Length = 612
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 73/194 (37%), Positives = 112/194 (57%), Gaps = 22/194 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M +DV++W T+V GY G V A+ F +MP RD V + +MI GY++
Sbjct: 271 AKSLFNKMPKRDVVTWATMVDGYAKLGFVHQAKSLFDRMPLRDVVAYNSMITGYVQNRYH 330
Query: 64 REALTLFREMQT-SNIRRDEFTTVRILTTFNN--------DIFV-------------GIA 101
+EA+ +F +M+ S++ DE T V +L+ DI + G+A
Sbjct: 331 KEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNKFRLGGKLGVA 390
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LID Y KCG ++K+ RVF ++ K W AMI GLAI G G++A DM Q+ + SI+ D
Sbjct: 391 LIDTYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIEKRSIKPD 450
Query: 162 EVTYVGVLSACTHN 175
++T++GVL+AC+H+
Sbjct: 451 DITFIGVLNACSHS 464
Score = 87.8 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 50/162 (30%), Positives = 86/162 (53%), Gaps = 20/162 (12%)
Query: 12 KNKDVISWTTIVSGYINRGQ-VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 70
+ K++ISW ++SGY R V++A++ F +MPE+D + W ++IDGY++ R +A +LF
Sbjct: 216 EKKNLISWNFMISGYAQRADGVNVAKKLFDEMPEKDLISWNSLIDGYVKHGRMEDAKSLF 275
Query: 71 REMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTW 130
+M D+ ++D Y K G V +A+ +F +M +D +
Sbjct: 276 NKMP------------------KRDVVTWATMVDGYAKLGFVHQAKSLFDRMPLRDVVAY 317
Query: 131 TAMIVGLAISGHGDTALDMFSQMLRAS-IRLDEVTYVGVLSA 171
+MI G + + A+ +F+ M + S + DE T V VLSA
Sbjct: 318 NSMITGYVQNRYHKEAIGIFNDMEKESHLSPDETTLVIVLSA 359
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 21/129 (16%)
Query: 46 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL---------------- 89
D LW A+I + R+AL LF M + + D+F+ +L
Sbjct: 85 DPFLWNAVIKSHSHGLDPRKALLLFCLMLETGVSVDKFSLSLVLKACSRLGFVKEGMQIH 144
Query: 90 -----TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGD 144
T +D+++ LI +Y KCG + A++VF +M R+D ++ +MI G G +
Sbjct: 145 GFLRKTGIWSDLYLQNCLIGLYIKCGCLGYARQVFDRMPRRDSVSYNSMIDGYVKCGMIE 204
Query: 145 TALDMFSQM 153
+A +F M
Sbjct: 205 SARGLFDLM 213
>gi|7362769|emb|CAB83139.1| putative protein [Arabidopsis thaliana]
Length = 558
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 72/199 (36%), Positives = 112/199 (56%), Gaps = 28/199 (14%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F + +KD+ +W ++V+ Y G +D AR+ F +MPER+ + W+ +I+GY+ ++
Sbjct: 116 AQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKY 175
Query: 64 REALTLFREMQTSN-----IRRDEFTTVRILTTFNN---------------------DIF 97
+EAL LFREMQ +R +EFT +L+ DI
Sbjct: 176 KEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIV 235
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156
+G ALIDMY KCG +E+A+RVF + +KD ++AMI LA+ G D +FS+M +
Sbjct: 236 LGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTS 295
Query: 157 -SIRLDEVTYVGVLSACTH 174
+I + VT+VG+L AC H
Sbjct: 296 DNINPNSVTFVGILGACVH 314
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 36/121 (29%)
Query: 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF----------W----------------- 120
+L + D FV +L++MY CGD+ AQRVF W
Sbjct: 89 LLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDAR 148
Query: 121 ----KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML-----RASIRLDEVTYVGVLSA 171
+M ++ +W+ +I G + G ALD+F +M A +R +E T VLSA
Sbjct: 149 KLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSA 208
Query: 172 C 172
C
Sbjct: 209 C 209
>gi|449446173|ref|XP_004140846.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 488
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 105/191 (54%), Gaps = 20/191 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F M K+V+SWT+++S Y G + AR +F +MP+R+ V W +MI Y++ F
Sbjct: 157 ARELFEKMPEKNVVSWTSMISAYAKAGDLATARMFFNKMPQRNVVSWNSMISSYVQHGDF 216
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN--------------------DIFVGIALI 103
+EAL LF +M + I D +T V + + ++ + ALI
Sbjct: 217 QEALDLFNQMLSEGITPDGYTFVSVFSACSHLGNLMLGTKIHYAIDDFSQLGVIAATALI 276
Query: 104 DMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEV 163
+MY KCGD+ +A +F K+ +KD F W M+ LA+ G AL +FS M + ++ ++
Sbjct: 277 EMYAKCGDINRAFNLFIKIGKKDVFFWNVMLKSLALHGQAQDALKLFSLMQKQGLKPNDF 336
Query: 164 TYVGVLSACTH 174
T++G L AC+H
Sbjct: 337 TFLGALFACSH 347
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 81/171 (47%), Gaps = 18/171 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M + V W ++ Y + G V A++ F M +RD V W MI GY++V
Sbjct: 95 ARKVFDEMCVRSVEVWNRMILRYTSTGDVSGAQKLFNTMEDRDTVSWNTMISGYIKVGEV 154
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+A LF +M N + ++I Y K GD+ A+ F KM
Sbjct: 155 MKARELFEKMPEKN------------------VVSWTSMISAYAKAGDLATARMFFNKMP 196
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+++ +W +MI G ALD+F+QML I D T+V V SAC+H
Sbjct: 197 QRNVVSWNSMISSYVQHGDFQEALDLFNQMLSEGITPDGYTFVSVFSACSH 247
>gi|255562765|ref|XP_002522388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538466|gb|EEF40072.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 472
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 112/194 (57%), Gaps = 21/194 (10%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A +F M NK+V+SWT++++ Y +G V+ AR+ F QMPE++ V W +MI Y++ +
Sbjct: 242 LAERVFQQMPNKNVVSWTSMITAYAKQGLVEYARKSFDQMPEKNVVSWNSMISSYVQGGQ 301
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNN--DIFVGI-------------------A 101
REAL LF EM + + +E T + +L+ D+ +G +
Sbjct: 302 CREALDLFHEMHSFRVVPNEATLLSVLSACGQIGDLVMGKKIHNYICGTSSMYSVTLCNS 361
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMY KCG + A VF +M K+ +W +I LA+ G+G A+++F +M A + D
Sbjct: 362 LIDMYAKCGALRIAIDVFNEMPNKNLVSWNVIIGALALHGYGVEAVELFRKMQAAGVWPD 421
Query: 162 EVTYVGVLSACTHN 175
E+T++G+LSAC+H+
Sbjct: 422 EITFMGLLSACSHS 435
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 87/203 (42%), Gaps = 52/203 (25%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
+++ YI G + AR+ F M ER V W +MI GY ++ +E LF+EM+ D
Sbjct: 129 LINAYIACGFIRYARKMFDDMSERSLVSWNSMIGGYSKLGWCKEVFLLFKEMREIGTEAD 188
Query: 82 EFTTVRIL---------------------TTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
+FT V +L T D+ ALIDMY KCG + A+RVF
Sbjct: 189 DFTLVNLLLVCSRRCDINLGRFVHLYIQITGMKIDLVARNALIDMYAKCGALVLAERVFQ 248
Query: 121 KMLRKDKFTWTAMIVGLA--------------------------IS-----GHGDTALDM 149
+M K+ +WT+MI A IS G ALD+
Sbjct: 249 QMPNKNVVSWTSMITAYAKQGLVEYARKSFDQMPEKNVVSWNSMISSYVQGGQCREALDL 308
Query: 150 FSQMLRASIRLDEVTYVGVLSAC 172
F +M + +E T + VLSAC
Sbjct: 309 FHEMHSFRVVPNEATLLSVLSAC 331
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 21/165 (12%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G +D A F Q+ + ++ ++I GY N +++ L+R++ S + +EFT +L
Sbjct: 36 GNLDYAHLVFNQISIPNKFMYNSLIRGYCNSNSPIKSMFLYRQLIDSGLSPNEFTFPFVL 95
Query: 90 TT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
F + I V LI+ Y CG + A+++F M +
Sbjct: 96 KACASKSAHWMSMIVHGHAQKLGFASLICVQNGLINAYIACGFIRYARKMFDDMSERSLV 155
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+W +MI G + G +F +M D+ T V +L C+
Sbjct: 156 SWNSMIGGYSKLGWCKEVFLLFKEMREIGTEADDFTLVNLLLVCS 200
Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+++ Y G + IA F +MP ++ V W +I EA+ LFR+MQ + +
Sbjct: 360 NSLIDMYAKCGALRIAIDVFNEMPNKNLVSWNVIIGALALHGYGVEAVELFRKMQAAGVW 419
Query: 80 RDEFTTVRILTTFNNDIFVGIAL 102
DE T + +L+ ++ V L
Sbjct: 420 PDEITFMGLLSACSHSGLVDSGL 442
>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 615
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 73/183 (39%), Positives = 100/183 (54%), Gaps = 21/183 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ DV ++ Y+ GQ +ARQ F MP ++ V W +MI G F+EAL +FR
Sbjct: 270 HSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFRR 329
Query: 73 MQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGD 111
MQT ++ D T V +L + N D +V AL+DMY KCG
Sbjct: 330 MQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKADGYVANALVDMYAKCGS 389
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+++A VF M KD +++TAMIVG A+ G D AL +FS+M R +R D VT VGVLSA
Sbjct: 390 IDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVGVLSA 449
Query: 172 CTH 174
C+H
Sbjct: 450 CSH 452
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 55/177 (31%), Positives = 84/177 (47%), Gaps = 26/177 (14%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
T++ Y G ++ + F Q P D + WT +I Y ++ EA+ F M N
Sbjct: 178 TLMRFYAVSGFIEAVEKVFDQGPHWDLISWTTLIQAYSKMGYPSEAIAAFFRM---NCTA 234
Query: 81 DEFTTVRILTT-----------------------FNNDIFVGIALIDMYCKCGDVEKAQR 117
D T V +L+ ++D+F+G AL+DMY KCG A++
Sbjct: 235 DRMTLVVVLSACSQLGDFTLGKKILAYMDHHLFDVHSDVFLGNALLDMYLKCGQPHLARQ 294
Query: 118 VFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+F M K+ +W +MI GLA G AL MF +M ++ D VT VGVL++C +
Sbjct: 295 LFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFRRMQTMGLKPDSVTLVGVLNSCAN 351
Score = 43.1 bits (100), Expect = 0.041, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 24/135 (17%)
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVG 99
N F +L+R+M + D +T +L T ++++FV
Sbjct: 117 NTFTHIFSLYRQMLLIGLSPDTYTLPYLLKACSQSHAFIEALQIHAHSIKTGLSSNLFVK 176
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
L+ Y G +E ++VF + D +WT +I + G+ A+ F R +
Sbjct: 177 NTLMRFYAVSGFIEAVEKVFDQGPHWDLISWTTLIQAYSKMGYPSEAIAAF---FRMNCT 233
Query: 160 LDEVTYVGVLSACTH 174
D +T V VLSAC+
Sbjct: 234 ADRMTLVVVLSACSQ 248
Score = 36.6 bits (83), Expect = 3.5, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYLR 59
A +F MK KDV S+T ++ G+ G+ D A F++MP D+V ++
Sbjct: 393 AFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVGVLSACSH 452
Query: 60 VNRFREALTLFREM 73
E F++M
Sbjct: 453 AGLLEEGRRHFQDM 466
>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 108/188 (57%), Gaps = 21/188 (11%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 67
F +M +D++SW +++ GY G++++AR+ F +M +++ + W+ MIDGY + +EAL
Sbjct: 231 FDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFDKMLQKNVISWSIMIDGYAQHRDSKEAL 290
Query: 68 TLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMY 106
LFR+M I+ D + V ++ + DI V AL+DMY
Sbjct: 291 NLFRQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMY 350
Query: 107 CKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYV 166
KCG ++A+R+F M ++ +W MIVGL ++G G AL+ F+QM I +D++ ++
Sbjct: 351 LKCGSRDEARRIFNSMPERNVVSWNVMIVGLGMNGFGKEALECFTQMEMERIPMDDLLFL 410
Query: 167 GVLSACTH 174
GVL AC+H
Sbjct: 411 GVLMACSH 418
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 98/177 (55%), Gaps = 25/177 (14%)
Query: 2 GFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR-- 59
G+A +F KD++SW +++ GY+ G+++ A+ F +MPERD V W+ MIDGY +
Sbjct: 162 GWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMPERDVVSWSIMIDGYGKKM 221
Query: 60 --VNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQR 117
VNR R F M T R L ++N ++ID Y K G++E A+
Sbjct: 222 GEVNRAR---VFFDSMPT-----------RDLVSWN-------SMIDGYAKVGEMEVARE 260
Query: 118 VFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+F KML+K+ +W+ MI G A AL++F QML I+ D V+ VG +SAC+
Sbjct: 261 IFDKMLQKNVISWSIMIDGYAQHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQ 317
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 24/154 (15%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
++VS +N V+ A FAQ+ + + + M+ Y + AL + EM+ +
Sbjct: 52 SVVSKTLN---VNYAELVFAQIHQPNSFICNTMVKCYTESSTPERALRFYAEMRRKGLLG 108
Query: 81 DEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVF 119
D +T +L F D+FV LI MYC+CG+ A+ VF
Sbjct: 109 DNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVF 168
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
KD +W +M+ G G + A +MF +M
Sbjct: 169 DGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEM 202
>gi|449470352|ref|XP_004152881.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 102/184 (55%), Gaps = 21/184 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ DVI T +V Y G V IARQ F +MP RD V W AMI + + +EAL + +
Sbjct: 137 DADVIVCTNLVKCYSAMGSVCIARQVFDKMPARDLVAWNAMISCFSQQGLHQEALQTYNQ 196
Query: 73 MQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGD 111
M++ N+ D FT V ++++ + ++VG ALIDMY KCG
Sbjct: 197 MRSENVDIDGFTLVGLISSCAHLGALNIGVQMHRFARENGLDQSLYVGNALIDMYAKCGS 256
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+++A +F +M RKD FTW +MIVG + G G A+ F QML A I+ + VT++G+L
Sbjct: 257 LDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQMLEARIQPNPVTFLGLLCG 316
Query: 172 CTHN 175
C+H
Sbjct: 317 CSHQ 320
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 78/179 (43%), Gaps = 19/179 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQM-----PERDYVLWTAMID 55
+ +A +F M+ +W +I+ G+ A ++ QM D ++ ++
Sbjct: 54 LAYAQLLFHQMECPQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLK 113
Query: 56 GYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKA 115
R+ R+ +E+ S IR ++ D+ V L+ Y G V A
Sbjct: 114 ACERIKAERKC----KEVHGSVIR----------CGYDADVIVCTNLVKCYSAMGSVCIA 159
Query: 116 QRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
++VF KM +D W AMI + G AL ++QM ++ +D T VG++S+C H
Sbjct: 160 RQVFDKMPARDLVAWNAMISCFSQQGLHQEALQTYNQMRSENVDIDGFTLVGLISSCAH 218
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 63/157 (40%), Gaps = 20/157 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE----RDYVLWTAMIDGYLR 59
A+ IF M+ KD+ +W +++ GY G+ A F QM E + V + ++ G
Sbjct: 260 AILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQMLEARIQPNPVTFLGLLCGCSH 319
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119
+E + F M + + E L+D+Y + G ++KA +
Sbjct: 320 QGLVQEGVKYFNLMSSKFRLKPEVKHYG-------------CLVDLYGRAGKLDKALEIV 366
Query: 120 WKMLRKDKFTWTAMIVGLAISGH---GDTALDMFSQM 153
D W ++ I + G+ A++ S++
Sbjct: 367 SNSSHNDSVLWRILLGSCKIHKNVTIGEIAMNRLSEL 403
>gi|147834049|emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]
Length = 751
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 104/197 (52%), Gaps = 22/197 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A ++F M + V+SWT ++ GY + G +D AR F MPE++ W AMI GY +
Sbjct: 375 MCSARKLFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYXQN 434
Query: 61 NRFREALTLFREMQ-TSNIRRDEFTTVRILTT---------------------FNNDIFV 98
+ EAL LF EMQ T+++ DE T V +L + V
Sbjct: 435 KQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATNV 494
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
G ALIDMY KCG++ K++ VF M K+ +W A+I AI+G AL +F +M
Sbjct: 495 GTALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGF 554
Query: 159 RLDEVTYVGVLSACTHN 175
+E+T +GVLSAC H+
Sbjct: 555 MPNEITMIGVLSACNHS 571
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 18/144 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ + T +V Y G++D AR+ F +M +R V WTA+I GY+R A LF +M
Sbjct: 296 DLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQM- 354
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
I +D FN +ID Y K GD+ A+++F +M + +WT MI
Sbjct: 355 ---IEKDS-------AAFNT-------MIDAYVKLGDMCSARKLFDEMPERSVVSWTIMI 397
Query: 135 VGLAISGHGDTALDMFSQMLRASI 158
G + +G+ D+A +F M ++
Sbjct: 398 YGYSSNGNLDSARSLFDAMPEKNL 421
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 23/143 (16%)
Query: 35 ARQYFAQMPERD-YVLWTAMIDGYLRVNRFREALTLFREMQ-TSNIRRDEFT-------- 84
AR+ F P RD L +MI Y+ + ++ E+ L+R+++ ++ D FT
Sbjct: 213 ARRMFDHRPHRDDAFLCNSMIKAYVGMRQYSESFALYRDLRRNTSFTPDSFTFSVLAKSC 272
Query: 85 -------------TVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWT 131
+ + F D++ AL+DMY K G ++ A+++F +M+ + + +WT
Sbjct: 273 ALNMAIWEGQEIHSHVVAVGFCLDLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWT 332
Query: 132 AMIVGLAISGHGDTALDMFSQML 154
A+I G SG D A +F QM+
Sbjct: 333 ALIGGYVRSGDMDNAGKLFDQMI 355
>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 617
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 109/195 (55%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A ++F M +DVI+W +++ + G + A + FA+MPER+ WT+MI GY +
Sbjct: 164 IGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQC 223
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVG 99
+ +EA+ LF EM+ + + +E T V +L + + +I V
Sbjct: 224 GKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVC 283
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
LIDMY KCG +E A R+F M + +W+AMI GLA G + AL +F++M+ ++
Sbjct: 284 NTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVK 343
Query: 160 LDEVTYVGVLSACTH 174
+ VT++G+L AC+H
Sbjct: 344 PNAVTFIGILHACSH 358
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 74/191 (38%), Gaps = 52/191 (27%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT--- 91
A+ F + + W + + + +A++LF ++ +I D +T +L
Sbjct: 66 AKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSR 125
Query: 92 ------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT---- 129
+++F+ ++ +Y CG++ A++VF KM ++D T
Sbjct: 126 LLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIM 185
Query: 130 ---------------------------WTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
WT+MI G A G A+D+F +M A + +E
Sbjct: 186 IARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNE 245
Query: 163 VTYVGVLSACT 173
VT V VL AC
Sbjct: 246 VTVVAVLVACA 256
>gi|347954502|gb|AEP33751.1| chloroplast biogenesis 19, partial [Lepidium virginicum]
Length = 485
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 106/189 (56%), Gaps = 21/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F +++K+ ++W T++ GY+ GQVD A F +MP+RD + WTAMI G+++ EA
Sbjct: 116 VFDYIEDKNSVTWNTMIDGYMRNGQVDNAVDVFDKMPDRDLISWTAMITGFVKKGFHEEA 175
Query: 67 LTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDM 105
L FREMQ S + D + + F N++ V +LID+
Sbjct: 176 LAWFREMQISGVNPDYVAIISAVAACTNLGALSFGLWVHRYVLSQDFRNNVRVSNSLIDL 235
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
YC+CG VE A++VF KM ++ +W ++IVG A +G+ + +L F +M R D VT+
Sbjct: 236 YCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNANESLVYFRKMQREGFTPDGVTF 295
Query: 166 VGVLSACTH 174
G L+AC+H
Sbjct: 296 TGALTACSH 304
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 59/141 (41%), Gaps = 24/141 (17%)
Query: 37 QYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN-- 94
Q Q V WT+ I R R EA+ F +M+ + I + T + +L+ N
Sbjct: 11 QKLNQSTSETIVSWTSRITLLSRDGRLAEAVREFSDMRLAGIEPNHITFIALLSACGNFP 70
Query: 95 ----------------------DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA 132
+ VG A++ MY K G + KA+ VF + K+ TW
Sbjct: 71 SGSEGLGYLLHGYACKLGLERSHVMVGTAILGMYSKSGHLRKARLVFDYIEDKNSVTWNT 130
Query: 133 MIVGLAISGHGDTALDMFSQM 153
MI G +G D A+D+F +M
Sbjct: 131 MIDGYMRNGQVDNAVDVFDKM 151
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 59/149 (39%), Gaps = 18/149 (12%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYL 58
FA ++F M+ + V+SW +++ G+ G + + YF +M D V +T +
Sbjct: 244 FARQVFDKMEKRTVVSWNSVIVGFAANGNANESLVYFRKMQREGFTPDGVTFTGALTACS 303
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
V E F+ M + D + RI L+D+Y + G +E A V
Sbjct: 304 HVGLVEEGFQYFQMM-----KHDYRISPRIEHYG--------CLVDLYSRAGRLEDAFIV 350
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
M K ++ A HG+ +
Sbjct: 351 VESMPMKPNEVVIGSLLA-ACRNHGNHTI 378
>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 583
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 66/195 (33%), Positives = 108/195 (55%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A ++F M +DVI+W +++ + G + A + FA+MPER+ WT+MI GY +
Sbjct: 164 IGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQC 223
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
+ +EA+ LF EM+ + + +E T V +L + +I V
Sbjct: 224 GKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVC 283
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
LIDMY KCG +E A R+F M + +W+AMI GLA G + AL +F++M+ ++
Sbjct: 284 NTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVK 343
Query: 160 LDEVTYVGVLSACTH 174
+ VT++G+L AC+H
Sbjct: 344 PNAVTFIGILHACSH 358
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 52/190 (27%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT--- 91
A+ F + + W + + + +A++LF ++ +I D +T +L
Sbjct: 66 AKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSR 125
Query: 92 ------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT---- 129
+++F+ ++ +Y CG++ A++VF KM ++D T
Sbjct: 126 LLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIM 185
Query: 130 ---------------------------WTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
WT+MI G A G A+D+F +M A + +E
Sbjct: 186 IARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNE 245
Query: 163 VTYVGVLSAC 172
VT V VL AC
Sbjct: 246 VTVVAVLVAC 255
>gi|224129982|ref|XP_002320719.1| predicted protein [Populus trichocarpa]
gi|222861492|gb|EEE99034.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 72/190 (37%), Positives = 103/190 (54%), Gaps = 22/190 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M N+D++SW ++ GY G+VDIAR F +MPERD V + AM+ GY++ EA
Sbjct: 280 LFDRMPNRDIVSWANMIDGYAKNGRVDIARSLFDEMPERDVVAYNAMMGGYVQNGYCMEA 339
Query: 67 LTLFREMQTS-NIRRDEFTTVRILTT---------------------FNNDIFVGIALID 104
L +F MQ+ N D T + L+ F+ D +G+ALID
Sbjct: 340 LGIFYGMQSDGNFLLDNATLLIALSAIAQLGHIDKGVAIHRFIEEIGFSLDGRLGVALID 399
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVT 164
MY KCG +E A VF + K W A+I GLAI G G+ A D +M R + D++T
Sbjct: 400 MYSKCGSIENAMMVFENIKEKSVDHWNAIIGGLAIHGLGELAFDFLMEMERMRVEPDDIT 459
Query: 165 YVGVLSACTH 174
++G+L+AC H
Sbjct: 460 FIGLLNACGH 469
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 56/203 (27%), Positives = 87/203 (42%), Gaps = 53/203 (26%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIAR--------------------------- 36
A ++F M +D +S+ +++ GY+ G++D+AR
Sbjct: 181 ASQVFDRMPKRDSVSYNSMIDGYVKGGRIDLARVVFDCIPLEERNLISWNSLIRGYAQSE 240
Query: 37 -------QYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
Q FA+MPERD + W +MIDG ++ R +A LF M
Sbjct: 241 DGILVAWQLFAKMPERDLISWNSMIDGCVKCGRMEDAQGLFDRMP--------------- 285
Query: 90 TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDM 149
N DI +ID Y K G V+ A+ +F +M +D + AM+ G +G+ AL +
Sbjct: 286 ---NRDIVSWANMIDGYAKNGRVDIARSLFDEMPERDVVAYNAMMGGYVQNGYCMEALGI 342
Query: 150 FSQMLR-ASIRLDEVTYVGVLSA 171
F M + LD T + LSA
Sbjct: 343 FYGMQSDGNFLLDNATLLIALSA 365
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 21/123 (17%)
Query: 49 LWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT----------------- 91
LW A+I Y + +EA+ L M + D+FT +L
Sbjct: 94 LWNAIIKTYSHGHDPKEAMWLVSLMLENGAFADKFTLSLVLKACSRVGLVKEGMQIHGLL 153
Query: 92 ----FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
F +D+F+ LI Y KCG + +A +VF +M ++D ++ +MI G G D A
Sbjct: 154 KKLEFGSDLFLQNCLISFYVKCGCLVRASQVFDRMPKRDSVSYNSMIDGYVKGGRIDLAR 213
Query: 148 DMF 150
+F
Sbjct: 214 VVF 216
>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
Length = 614
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 70/193 (36%), Positives = 104/193 (53%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F M ++V+SW+T+VSGY +G +++AR F +MP ++ V WT M+ +
Sbjct: 244 AFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLV 303
Query: 64 REALTLFREMQTSNIRRDEFTTVRILT---------------------TFNNDIFVGIAL 102
EA LF +M+ +++ D V IL V AL
Sbjct: 304 DEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNAL 363
Query: 103 IDMYCKCGDVEKAQRVF-WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
IDM+CKCG V +A VF + ++KD +W ++I G A+ GHGD AL++F+QM + D
Sbjct: 364 IDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPD 423
Query: 162 EVTYVGVLSACTH 174
VT + VLSACTH
Sbjct: 424 AVTMINVLSACTH 436
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 56/172 (32%), Positives = 88/172 (51%), Gaps = 18/172 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +DV+SW T ++ + G++ R+ F +MPE+D V W ++DGY +
Sbjct: 182 ARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEV 241
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
A LF+ M N+ ++T ++ YCK GD+E A+ +F KM
Sbjct: 242 EAAFELFQRMPERNVV--SWST----------------MVSGYCKKGDLEMARVIFDKMP 283
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
K+ TWT M+ A G D A +F+QM AS+ LD V +L+AC +
Sbjct: 284 SKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAES 335
Score = 42.4 bits (98), Expect = 0.081, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 24/110 (21%)
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFN--------------------NDIFVGIALI 103
R+AL F M RRD FT ++ + D FVG ALI
Sbjct: 115 RDALAAFSAMP----RRDSFTYSFLIKALSAAGVAPVRAVHSHVVKLGSVEDTFVGNALI 170
Query: 104 DMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
D Y K G A++VF +M +D +W + + G +F +M
Sbjct: 171 DAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEM 220
>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
Length = 921
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 70/193 (36%), Positives = 104/193 (53%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F M ++V+SW+T+VSGY +G +++AR F +MP ++ V WT M+ +
Sbjct: 551 AFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLV 610
Query: 64 REALTLFREMQTSNIRRDEFTTVRILT---------------------TFNNDIFVGIAL 102
EA LF +M+ +++ D V IL V AL
Sbjct: 611 DEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNAL 670
Query: 103 IDMYCKCGDVEKAQRVF-WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
IDM+CKCG V +A VF + ++KD +W ++I G A+ GHGD AL++F+QM + D
Sbjct: 671 IDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPD 730
Query: 162 EVTYVGVLSACTH 174
VT + VLSACTH
Sbjct: 731 AVTMINVLSACTH 743
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 56/172 (32%), Positives = 88/172 (51%), Gaps = 18/172 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +DV+SW T ++ + G++ R+ F +MPE+D V W ++DGY +
Sbjct: 489 ARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEV 548
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
A LF+ M N+ ++T ++ YCK GD+E A+ +F KM
Sbjct: 549 EAAFELFQRMPERNVV--SWST----------------MVSGYCKKGDLEMARVIFDKMP 590
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
K+ TWT M+ A G D A +F+QM AS+ LD V +L+AC +
Sbjct: 591 SKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAES 642
Score = 42.4 bits (98), Expect = 0.081, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 24/110 (21%)
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFN--------------------NDIFVGIALI 103
R+AL F M RRD FT ++ + D FVG ALI
Sbjct: 422 RDALAAFSAMP----RRDSFTYSFLIKALSAAGVAPVRAVHSHVVKLGSVEDTFVGNALI 477
Query: 104 DMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
D Y K G A++VF +M +D +W + + G +F +M
Sbjct: 478 DAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEM 527
>gi|302142752|emb|CBI19955.3| unnamed protein product [Vitis vinifera]
Length = 488
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 101/193 (52%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A IF M K V+SWT ++SGY G + A F MP ++ V W AMI GY+ + F
Sbjct: 158 AQSIFYQMPEKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEF 217
Query: 64 REALTLFREMQ-TSNIRRDEFTTVRILTTFNN---------------------DIFVGIA 101
+AL +F M R D+ T + IL+ + I +G A
Sbjct: 218 DQALCVFHHMLINGECRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNA 277
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDM+ KCGDVE A+ VF M ++ TWT M+ GLA++G A+++F +M + D
Sbjct: 278 LIDMFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPD 337
Query: 162 EVTYVGVLSACTH 174
+V ++ VLSACTH
Sbjct: 338 DVIFIAVLSACTH 350
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 85/172 (49%), Gaps = 19/172 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+ + M +++++W ++V G G +++A F QMP R+ V W +MI GY+R+
Sbjct: 96 AIGLLDKMPERNIVTWNSVVCGLSKAGNMELAHSVFEQMPLRNEVSWNSMISGYVRIGDV 155
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
R A ++F +M E T V A+I Y GD++ A+ +F M
Sbjct: 156 RAAQSIFYQM-------PEKTVVSW-----------TAMISGYATNGDLKSAENIFNHMP 197
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQML-RASIRLDEVTYVGVLSACTH 174
K+ +W AMI G + D AL +F ML R D+ T + +LSAC H
Sbjct: 198 VKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTLISILSACAH 249
>gi|15225365|ref|NP_182015.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546766|sp|Q1PEU4.2|PP201_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g44880
gi|2344896|gb|AAC31836.1| hypothetical protein [Arabidopsis thaliana]
gi|330255385|gb|AEC10479.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 555
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 111/196 (56%), Gaps = 23/196 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +F M +K VI+WTT++ GY N +D AR+ F MPER+ V W MI GY +
Sbjct: 192 MTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQN 251
Query: 61 NRFREALTLFREMQ-TSNIRRDEFTTVRILTTFNN---------------------DIFV 98
+ +E + LF+EMQ T+++ D+ T + +L ++ + V
Sbjct: 252 KQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKV 311
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
A++DMY KCG++EKA+R+F +M K +W AMI G A++G+ ALD+F M+
Sbjct: 312 CTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEE- 370
Query: 159 RLDEVTYVGVLSACTH 174
+ DE+T + V++AC H
Sbjct: 371 KPDEITMLAVITACNH 386
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 86/173 (49%), Gaps = 20/173 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE-RDYVLWTAMIDGYLR 59
MG A F M ++ +SWT ++SGYI G++D+A + F QMP +D V++ AM+DG+++
Sbjct: 129 MGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGFVK 188
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119
A LF EM TV TT +I YC D++ A+++F
Sbjct: 189 SGDMTSARRLFDEMT--------HKTVITWTT----------MIHGYCNIKDIDAARKLF 230
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM-LRASIRLDEVTYVGVLSA 171
M ++ +W MI G + + +F +M S+ D+VT + VL A
Sbjct: 231 DAMPERNLVSWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPA 283
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 31/161 (19%)
Query: 16 VISWTTIVSGYINRGQVDIARQYFAQMPERD-YVLWTAMIDGYLRVNRFREALTLFREMQ 74
VIS + + GY AR+ F Q P+RD L +MI YL ++ ++ L+R+++
Sbjct: 18 VISASAVGIGY--------ARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLR 69
Query: 75 TSN-IRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDV 112
D FT + + F D++V ++DMY K G +
Sbjct: 70 KETCFAPDNFTFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKM 129
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
A+ F +M + + +WTA+I G G D A +F QM
Sbjct: 130 GCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQM 170
>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 598
Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats.
Identities = 66/181 (36%), Positives = 101/181 (55%), Gaps = 21/181 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D ++ T+++ + G+V AR F +MPER+ V W+AM++GY++ REAL +F +MQ
Sbjct: 158 DASTFNTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQ 217
Query: 75 TSNIRRDEFTTVRILTT------------------FNN---DIFVGIALIDMYCKCGDVE 113
+R D+ V +L NN +F+G AL+DMY KCG+V+
Sbjct: 218 AQGVRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQ 277
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
VF M K+ WT MI GLA+ G G +L +FSQM + ++ D++ ++G L ACT
Sbjct: 278 LGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACT 337
Query: 174 H 174
H
Sbjct: 338 H 338
Score = 42.7 bits (99), Expect = 0.060, Method: Composition-based stats.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 59/178 (33%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
+E+F MK+K+V++WTT++ G G R
Sbjct: 278 LGMEVFEGMKDKNVLAWTTMIKGLAMHG-------------------------------R 306
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKC---GDVEKAQRVF 119
++LTLF +M++S ++ D+ IA I C C G V+K + +F
Sbjct: 307 GSDSLTLFSQMESSGVKPDD-----------------IAFIGALCACTHTGLVDKGRELF 349
Query: 120 WKMLR----KDKFT-WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
M+ K K + M+ LA +G A DM +M ++ D + + +++ C
Sbjct: 350 NSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKM---PMKPDALIWGALMAGC 404
>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 71/195 (36%), Positives = 113/195 (57%), Gaps = 22/195 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A +F M +DV++ T ++S Y ++G V+ A F+++ +D V WTAMIDG++R
Sbjct: 198 LGDARRVFEEMP-EDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRN 256
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVG 99
AL FR MQ N+R +EFT V +L+ + ++FVG
Sbjct: 257 EEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVG 316
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALI+MY +CG +++AQ VF +M +D T+ MI GL+++G A+++F M+ +R
Sbjct: 317 NALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLR 376
Query: 160 LDEVTYVGVLSACTH 174
VT+VGVL+AC+H
Sbjct: 377 PTNVTFVGVLNACSH 391
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 51/194 (26%)
Query: 32 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT 91
+D A + F + L+TA+IDG++ + +A+ L+ M +I D + IL
Sbjct: 97 IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKA 156
Query: 92 ---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKM-------- 122
+++ V + ++++Y KCG++ A+RVF +M
Sbjct: 157 CGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAST 216
Query: 123 ----------------------LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
RKD WTAMI G + + AL+ F M ++R
Sbjct: 217 VMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRP 276
Query: 161 DEVTYVGVLSACTH 174
+E T V VLSAC+
Sbjct: 277 NEFTIVCVLSACSQ 290
Score = 43.1 bits (100), Expect = 0.045, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 40/80 (50%)
Query: 93 NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
+ D F+ L+ KC ++ A R+F + + +TA+I G SG+ A+ ++S+
Sbjct: 78 SQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSR 137
Query: 153 MLRASIRLDEVTYVGVLSAC 172
ML SI D +L AC
Sbjct: 138 MLHDSILPDNYLMASILKAC 157
>gi|225453406|ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880
[Vitis vinifera]
gi|297734603|emb|CBI16654.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 104/197 (52%), Gaps = 22/197 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A ++F M + V+SWT ++ GY + G +D AR F MPE++ W AMI GY +
Sbjct: 201 MCSARKLFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYRQN 260
Query: 61 NRFREALTLFREMQ-TSNIRRDEFTTVRILTT---------------------FNNDIFV 98
+ EAL LF EMQ T+++ DE T V +L + V
Sbjct: 261 KQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATNV 320
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
G ALIDMY KCG++ K++ VF M K+ +W A+I AI+G AL +F +M
Sbjct: 321 GTALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGF 380
Query: 159 RLDEVTYVGVLSACTHN 175
+E+T +GVLSAC H+
Sbjct: 381 MPNEITMIGVLSACNHS 397
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 18/144 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ + T +V Y G++D AR+ F +M +R V WTA+I GY+R A LF +M
Sbjct: 122 DLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQM- 180
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
I +D FN +ID Y K GD+ A+++F +M + +WT MI
Sbjct: 181 ---IEKDS-------AAFNT-------MIDAYVKLGDMCSARKLFDEMPERSVVSWTIMI 223
Query: 135 VGLAISGHGDTALDMFSQMLRASI 158
G + +G+ D+A +F M ++
Sbjct: 224 YGYSSNGNLDSARSLFDAMPEKNL 247
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 26/178 (14%)
Query: 4 ALEIFGNMKNKDVISWTTIV---SGYINRGQVDIARQYFAQMPERD-YVLWTAMIDGYLR 59
ALE N+ K + + ++I Y + AR+ F P RD L +MI Y+
Sbjct: 5 ALETNPNLFTKFIATCSSIALLAPLYDPLAGIVHARRMFDHRPHRDDAFLCNSMIKAYVG 64
Query: 60 VNRFREALTLFREMQ-TSNIRRDEFT---------------------TVRILTTFNNDIF 97
+ ++ E+ L+R+++ ++ D FT + + F D++
Sbjct: 65 MRQYSESFALYRDLRRNTSFTPDSFTFSVLAKSCALNMAIWEGQEIHSHVVAVGFCLDLY 124
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155
AL+DMY K G ++ A+++F +M+ + + +WTA+I G SG D A +F QM+
Sbjct: 125 AATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQMIE 182
>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 639
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 71/193 (36%), Positives = 100/193 (51%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F M ++V+SW+T+VSGY +G +++AR F +MP ++ V WT M+ +
Sbjct: 269 AFELFQCMPERNVVSWSTVVSGYCKKGDIEMARVIFDKMPTKNLVTWTIMVSACAQNGLV 328
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
EA LF +M+ + + D V IL V A+
Sbjct: 329 EEAGRLFTQMKEAAVELDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNAM 388
Query: 103 IDMYCKCGDVEKAQRVF-WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
IDM+CKCG V +A VF ++ KD +W +I G A+ GHGD ALD F+QM R D
Sbjct: 389 IDMFCKCGCVNRADYVFDTEIAEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFRPD 448
Query: 162 EVTYVGVLSACTH 174
VT + VLSACTH
Sbjct: 449 AVTMINVLSACTH 461
Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats.
Identities = 54/172 (31%), Positives = 92/172 (53%), Gaps = 18/172 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +D +SW + ++ + +G+V AR+ F +MP++D V W ++DGY + +
Sbjct: 207 ASKVFEEMPRRDTVSWNSAMAAMVRQGEVASARRMFDEMPDKDTVSWNTVLDGYTKAGKM 266
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+A LF+ M N+ ++TV + YCK GD+E A+ +F KM
Sbjct: 267 EDAFELFQCMPERNVV--SWSTV----------------VSGYCKKGDIEMARVIFDKMP 308
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
K+ TWT M+ A +G + A +F+QM A++ LD V +L+AC +
Sbjct: 309 TKNLVTWTIMVSACAQNGLVEEAGRLFTQMKEAAVELDVAAVVSILAACAES 360
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 17/149 (11%)
Query: 7 IFGNMKNKDVISW--TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFR 64
IF + N ++ T++ Y A F+ MP+RD ++ +I
Sbjct: 112 IFASFPNPQATTFLPNTLLRAYALNALPHAAVSLFSAMPQRDSFTYSFLIKAL-----SS 166
Query: 65 EALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124
LT R + + ++ D +VG ALID Y K G A +VF +M R
Sbjct: 167 SGLTPLRAVHSHVVKLGSI----------EDTYVGNALIDAYSKNGGFLDASKVFEEMPR 216
Query: 125 KDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+D +W + + + G +A MF +M
Sbjct: 217 RDTVSWNSAMAAMVRQGEVASARRMFDEM 245
>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Glycine max]
Length = 529
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 104/195 (53%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +F M K+V +W ++ GY G + A F QMP RD + WT M++ Y R
Sbjct: 158 MASAGRLFDEMPEKNVATWNAMIDGYGKLGNAESAEFLFNQMPARDIISWTTMMNCYSRN 217
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
R++E + LF ++ + DE T +++ F+ D+++G
Sbjct: 218 KRYKEVIALFHDVIDKGMIPDEVTMTTVISACAHLGALALGKEVHLYLVLQGFDLDVYIG 277
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
+LIDMY KCG ++ A VF+K+ K+ F W +I GLA G+ + AL MF +M R IR
Sbjct: 278 SSLIDMYAKCGSIDMALLVFYKLQTKNLFCWNCIIDGLATHGYVEEALRMFGEMERKRIR 337
Query: 160 LDEVTYVGVLSACTH 174
+ VT++ +L+ACTH
Sbjct: 338 PNAVTFISILTACTH 352
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 75/162 (46%), Gaps = 18/162 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ V TT++ Y G V +R+ F MPERD WT MI ++R A LF E
Sbjct: 108 DSHVFVQTTLIEFYSTFGDVGGSRRVFDDMPERDVFAWTTMISAHVRDGDMASAGRLFDE 167
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA 132
M N+ T+N A+ID Y K G+ E A+ +F +M +D +WT
Sbjct: 168 MPEKNV-----------ATWN-------AMIDGYGKLGNAESAEFLFNQMPARDIISWTT 209
Query: 133 MIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
M+ + + + +F ++ + DEVT V+SAC H
Sbjct: 210 MMNCYSRNKRYKEVIALFHDVIDKGMIPDEVTMTTVISACAH 251
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 68/166 (40%), Gaps = 21/166 (12%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
+D +S N +++A FA + + +++ A+I G + +AL + M
Sbjct: 8 QDCFLVNQFISACSNLSCINLAASAFANVQNPNVLVFNALIRGCVHCCYSEQALVHYMHM 67
Query: 74 QTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDV 112
+N+ ++ ++ F++ +FV LI+ Y GDV
Sbjct: 68 LRNNVMPTSYSFSSLIKACTLLVDSAFGEAVHGHVWKHGFDSHVFVQTTLIEFYSTFGDV 127
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
++RVF M +D F WT MI G +A +F +M ++
Sbjct: 128 GGSRRVFDDMPERDVFAWTTMISAHVRDGDMASAGRLFDEMPEKNV 173
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 23/148 (15%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV ++++ Y G +D+A F ++ ++ W +IDG EAL +F EM+
Sbjct: 273 DVYIGSSLIDMYAKCGSIDMALLVFYKLQTKNLFCWNCIIDGLATHGYVEEALRMFGEME 332
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVG------IALIDMYC----------------KCGDV 112
IR + T + ILT + F+ ++++ YC K G +
Sbjct: 333 RKRIRPNAVTFISILTACTHAGFIEEGRRWFMSMVQDYCIAPQVEHYGCMVDLLSKAGLL 392
Query: 113 EKAQRVFWKM-LRKDKFTWTAMIVGLAI 139
E A + M + + F W A++ G +
Sbjct: 393 EDALEMIRNMTVEPNSFIWGALLNGCKL 420
>gi|345505214|gb|AEN99831.1| chlororespiratory reduction 4 [Brassica rapa]
Length = 612
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 76/225 (33%), Positives = 112/225 (49%), Gaps = 53/225 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M KD+ISW +++ GY+ G+++ A+ F MP RD V W MIDGY ++
Sbjct: 247 AAKLFDEMPEKDLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLV 306
Query: 64 REALTLFREM--------------------------------QTSNIRRDEFTTVRILTT 91
EA TLF +M + S++ DE + V +L+
Sbjct: 307 HEAKTLFDQMPHRDVVVYNSMMSGXVQNRYHMEALEVFNHMEKESHLTPDETSLVIVLSA 366
Query: 92 ---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTW 130
F + +G+ALIDMY KCG ++ A RVF + K W
Sbjct: 367 XAQLGRLSKAIDMHLYIVEKQFPSSGKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDHW 426
Query: 131 TAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
AMI GLA+ G G++A DM Q+ R SI+ D +T+VGVL+AC+H+
Sbjct: 427 NAMIGGLAVHGLGESAFDMLLQIERRSIKPDHITFVGVLNACSHS 471
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 54/178 (30%), Positives = 83/178 (46%), Gaps = 25/178 (14%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYL 58
+GFA ++F M +D +S+ +++ GY+ G V+ A + F MP +R+ + W +MI GY
Sbjct: 179 LGFARQVFDRMPQRDSVSYNSMIDGYLKCGLVESAGELFGLMPREKRNLITWNSMIGGYA 238
Query: 59 -RVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQR 117
R + A LF EM + L ++N ++I Y K G +E A+
Sbjct: 239 QRADGVNVAAKLFDEMPEKD-----------LISWN-------SMIGGYVKHGRIEDAKG 280
Query: 118 VFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
+F M R+D TW MI G G A +F QM D V Y ++S N
Sbjct: 281 LFDVMPRRDVVTWAIMIDGYGKLGLVHEAKTLFDQMPHR----DVVVYNSMMSGXVQN 334
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
Query: 43 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVR---ILTTFNNDIFVG 99
P + L M++ + V++F +L L + ++ E T V I T +D+F+
Sbjct: 109 PRKALFLLCLMLENGVPVDKFSFSLALKACSRLGFVK--EGTQVHGFLIKTGTWSDLFLQ 166
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155
LI +Y KCG + A++VF +M ++D ++ +MI G G ++A ++F M R
Sbjct: 167 NCLIGLYIKCGCLGFARQVFDRMPQRDSVSYNSMIDGYLKCGLVESAGELFGLMPR 222
>gi|357501421|ref|XP_003620999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124365545|gb|ABN09779.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355496014|gb|AES77217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 601
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 107/196 (54%), Gaps = 22/196 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A ++F M+ K+VISWT++V GY G VD AR F MPE++ + W AMI GY +
Sbjct: 236 MDLARDLFDKMRVKNVISWTSMVHGYSEDGDVDEARFLFDCMPEKNVLSWNAMIRGYCQN 295
Query: 61 NRFREALTLFREMQTS-NIRRDEFTTVRILTT---------------------FNNDIFV 98
R +AL LF EM+ + ++ +E T V +L + + V
Sbjct: 296 GRSHDALKLFCEMRGNVDVEMNEVTVVSVLPAVADLSALDLGGWVHGFVQRNQLDGSVHV 355
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
AL+DMY KCG++ KA+ VF +M KD +W A+I G ++G AL++F+ MLR
Sbjct: 356 CNALVDMYAKCGEIGKAKLVFEEMTEKDTGSWNALINGYGVNGCAKEALEVFAMMLREGF 415
Query: 159 RLDEVTYVGVLSACTH 174
+++T VLSAC H
Sbjct: 416 EPNQITMTSVLSACNH 431
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 19/172 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+GFA ++F M + ++SWT ++ GY G + AR+ F M +RD + MIDGY+++
Sbjct: 174 VGFARKVFDEMSVRSLVSWTAVIVGYARCGDMVEARKLFDGMVDRDVAAFNVMIDGYVKM 233
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
R A LF +M+ N + +++ Y + GDV++A+ +F
Sbjct: 234 GRMDLARDLFDKMRVKN------------------VISWTSMVHGYSEDGDVDEARFLFD 275
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML-RASIRLDEVTYVGVLSA 171
M K+ +W AMI G +G AL +F +M + ++EVT V VL A
Sbjct: 276 CMPEKNVLSWNAMIRGYCQNGRSHDALKLFCEMRGNVDVEMNEVTVVSVLPA 327
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 24/147 (16%)
Query: 32 VDIARQYFAQMPER--DYVLWTAMIDGYLRVNRFREALTLFREMQ--------------- 74
V AR +F P D L +I+ + + +F TL+ +
Sbjct: 70 VQHARLFFNHTPPHKCDEFLCNTIINAHFSLRQFNHGFTLYNQFSKDCFFRPSSYTFTLI 129
Query: 75 -----TSNIRRDEFTT--VRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDK 127
S+ +R F V + F D++VG +L+DMY K GDV A++VF +M +
Sbjct: 130 LKGCSVSDAKRQGFQIHGVVLKNWFCLDLYVGTSLVDMYVKFGDVGFARKVFDEMSVRSL 189
Query: 128 FTWTAMIVGLAISGHGDTALDMFSQML 154
+WTA+IVG A G A +F M+
Sbjct: 190 VSWTAVIVGYARCGDMVEARKLFDGMV 216
>gi|449477795|ref|XP_004155125.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 102/184 (55%), Gaps = 21/184 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ DVI T +V Y G V IARQ F +MP RD V W AMI + + +EAL + +
Sbjct: 137 DADVIVCTNLVKCYSAMGLVCIARQVFDKMPARDLVAWNAMISCFSQQGLHQEALQTYNQ 196
Query: 73 MQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGD 111
M++ N+ D FT V ++++ + ++VG ALIDMY KCG
Sbjct: 197 MRSENVDVDGFTLVGLISSCAHLGALNIGVQMHRFARENGLDQSLYVGNALIDMYAKCGS 256
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+++A +F +M RKD FTW +MIVG + G G A+ F QML A I+ + VT++G+L
Sbjct: 257 LDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQMLEARIQPNPVTFLGLLCG 316
Query: 172 CTHN 175
C+H
Sbjct: 317 CSHQ 320
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 78/179 (43%), Gaps = 19/179 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQM-----PERDYVLWTAMID 55
+ +A +F M+ +W +I+ G+ A ++ QM D ++ ++
Sbjct: 54 LAYAQLLFHQMECPQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLK 113
Query: 56 GYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKA 115
R+ R+ +E+ S IR ++ D+ V L+ Y G V A
Sbjct: 114 ACERIKAERKC----KEVHGSVIR----------CGYDADVIVCTNLVKCYSAMGLVCIA 159
Query: 116 QRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
++VF KM +D W AMI + G AL ++QM ++ +D T VG++S+C H
Sbjct: 160 RQVFDKMPARDLVAWNAMISCFSQQGLHQEALQTYNQMRSENVDVDGFTLVGLISSCAH 218
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 63/157 (40%), Gaps = 20/157 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE----RDYVLWTAMIDGYLR 59
A+ IF M+ KD+ +W +++ GY G+ A F QM E + V + ++ G
Sbjct: 260 AILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQMLEARIQPNPVTFLGLLCGCSH 319
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119
+E + F M + + E L+D+Y + G ++KA +
Sbjct: 320 QGLVQEGVKYFNLMSSKFRLKPEVKHYG-------------CLVDLYGRAGKLDKALEIV 366
Query: 120 WKMLRKDKFTWTAMIVGLAISGH---GDTALDMFSQM 153
D W ++ I + G+ A++ S++
Sbjct: 367 SNSSHNDSVLWRILLGSCKIHKNVTIGEIAMNRLSEL 403
>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 491
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 104/193 (53%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F M ++V+SW+T+VSGY +G +++AR F +MP ++ V WT M+ +
Sbjct: 121 AFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLV 180
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
EA LF +M+ +++ D V IL V AL
Sbjct: 181 DEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNAL 240
Query: 103 IDMYCKCGDVEKAQRVF-WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
IDM+CKCG V +A VF + ++KD +W ++I G A+ GHGD AL++F+QM + D
Sbjct: 241 IDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPD 300
Query: 162 EVTYVGVLSACTH 174
VT + VLSACTH
Sbjct: 301 AVTMINVLSACTH 313
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 88/172 (51%), Gaps = 18/172 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +DV+SW T ++ + G++ R+ F +MPE+D V W ++DGY +
Sbjct: 59 ARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEV 118
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
A LF+ M N+ ++T ++ YCK GD+E A+ +F KM
Sbjct: 119 EAAFELFQRMPERNVV--SWST----------------MVSGYCKKGDLEMARVIFDKMP 160
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
K+ TWT M+ A G D A +F+QM AS+ LD V +L+AC +
Sbjct: 161 SKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAES 212
Score = 39.3 bits (90), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
D FVG ALID Y K G A++VF +M +D +W + + G +F +M
Sbjct: 39 DTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEM 97
>gi|347954508|gb|AEP33754.1| chloroplast biogenesis 19, partial [Nasturtium officinale]
Length = 447
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 107/189 (56%), Gaps = 21/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
IF M++K+ ++W T++ GY+ GQV+ A + F +M RD + WTAM++G+++ EA
Sbjct: 78 IFDYMEDKNSVTWNTMIDGYMRSGQVNTAVKLFDEMLNRDLISWTAMVNGFVKKGFHEEA 137
Query: 67 LTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDM 105
L+ FREMQ S ++ D + L F N++ V +LID+
Sbjct: 138 LSWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVMSQDFKNNVRVSNSLIDL 197
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
YC+CG VE A++VF KM ++ +W ++IVG A +G+ +L F +M + D VT+
Sbjct: 198 YCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLFYFRKMQEEGFKPDAVTF 257
Query: 166 VGVLSACTH 174
G L+AC+H
Sbjct: 258 TGALTACSH 266
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 18/149 (12%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYL 58
FA ++F M+ + V+SW +++ G+ G + YF +M E D V +T +
Sbjct: 206 FARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLFYFRKMQEEGFKPDAVTFTGALTACS 265
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
V E L F+ M +RD + RI ++D+Y + G +E A +V
Sbjct: 266 HVGLVEEGLRYFQTM-----KRDYRISPRIEHYG--------CIVDLYSRAGRLEDALKV 312
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
M K ++ A HG+ L
Sbjct: 313 VQSMPMKPNEVVIGSLLA-ACKNHGNNTL 340
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 96 IFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML 154
+ VG A++ MY K G KA+ +F M K+ TW MI G SG +TA+ +F +ML
Sbjct: 56 VMVGTAILGMYSKRGRFRKARLIFDYMEDKNSVTWNTMIDGYMRSGQVNTAVKLFDEML 114
>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Brachypodium distachyon]
Length = 544
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 105/196 (53%), Gaps = 22/196 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A +F + ++WT++V+G+ G V+ AR+ F +MPERD V W AMI G +
Sbjct: 93 VGSAQRLFERVLAPTPVTWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGN 152
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVG 99
EAL LFR M + T V +L+ D F+G
Sbjct: 153 RLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLG 212
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM-LRASI 158
AL+DMY KCG VE A VF + ++ TW AMI GLA++G+ ALDMF QM L ++
Sbjct: 213 TALVDMYAKCGAVELALEVFTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQMELNGTV 272
Query: 159 RLDEVTYVGVLSACTH 174
DEVT+VGVL AC+H
Sbjct: 273 APDEVTFVGVLLACSH 288
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 69/151 (45%), Gaps = 18/151 (11%)
Query: 23 VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDE 82
+ GY + G+V AR+ F MP RD V + +MI GY A LF
Sbjct: 53 IQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAVSGDVGSAQRLFE----------- 101
Query: 83 FTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGH 142
R+L +++ +C+ GDVE A+RVF +M +D +W AMI G +
Sbjct: 102 ----RVLAP---TPVTWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRL 154
Query: 143 GDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
AL +F M+ + T V VLSACT
Sbjct: 155 PVEALCLFRWMMEEGFVPNRGTVVSVLSACT 185
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 22/124 (17%)
Query: 52 AMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGD 111
A I GY R +A +F M RRD +FN ++I Y GD
Sbjct: 51 AFIQGYCSAGRVTDARRVFDGMP----RRD-------TVSFN-------SMIHGYAVSGD 92
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
V AQR+F ++L TWT+M+ G +G ++A +F +M D V++ ++S
Sbjct: 93 VGSAQRLFERVLAPTPVTWTSMVAGFCRAGDVESARRVFEEMPER----DLVSWNAMISG 148
Query: 172 CTHN 175
C N
Sbjct: 149 CVGN 152
>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 101/182 (55%), Gaps = 22/182 (12%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
+DV+ T +V Y G V+IAR F MPERD V W AMI Y + +EAL ++ M
Sbjct: 143 RDVVVCTGLVRCYGRNGCVEIARMVFDNMPERDLVAWNAMISCYSQAGYHQEALRVYDYM 202
Query: 74 QTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDV 112
+ N+ D FT V +L++ ++ ++FVG ALIDMY KCG +
Sbjct: 203 RNENVGVDGFTLVGLLSSCSHVGALNMGVKLHRIASEKGLLRNVFVGNALIDMYAKCGSL 262
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+ A VF M R D FTW +MIVG + G GD A+ F+QML A +R + + ++G+L C
Sbjct: 263 DGALEVFNGMPR-DAFTWNSMIVGFGVHGFGDEAIYFFNQMLEAGVRPNSIAFLGLLCGC 321
Query: 173 TH 174
+H
Sbjct: 322 SH 323
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 80/175 (45%), Gaps = 11/175 (6%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ +A +F ++ N +W +I+ G+ A Y+ +M + D
Sbjct: 59 LPYAQHLFRHILNPQTQAWNSIIRGFAQSPSPVQAIFYYNRM----------LFDSVSGP 108
Query: 61 NRFREALTLFREMQTSNIRR-DEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119
+ F + TL + +++ +E I T + D+ V L+ Y + G VE A+ VF
Sbjct: 109 DTFTFSFTLKACERIKALKKCEEVHGSIIRTGYERDVVVCTGLVRCYGRNGCVEIARMVF 168
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
M +D W AMI + +G+ AL ++ M ++ +D T VG+LS+C+H
Sbjct: 169 DNMPERDLVAWNAMISCYSQAGYHQEALRVYDYMRNENVGVDGFTLVGLLSSCSH 223
>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
Length = 2355
Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 64/190 (33%), Positives = 111/190 (58%), Gaps = 22/190 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M K+++SW+T++SGY G ++ ARQ F MP R+ V W AMI GY + ++ +A
Sbjct: 215 VFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADA 274
Query: 67 LTLFREMQ-TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALID 104
+ LFR+MQ + ++ T V +L+ +F+G AL D
Sbjct: 275 IELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALAD 334
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVT 164
MY KCG V +A+ VF +M +D +W+ +I+GLA+ G+ + A + F++M+ + ++++
Sbjct: 335 MYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDIS 394
Query: 165 YVGVLSACTH 174
++G+L+ACTH
Sbjct: 395 FMGLLTACTH 404
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 50/204 (24%), Positives = 82/204 (40%), Gaps = 54/204 (26%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP----ERDYVLWTAMIDGYLRVNR 62
+ N N D ++T+++ QV ++ + E + + +++D Y +V
Sbjct: 118 VLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGC 177
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM 122
A LF EM VR + ++N LI YC G V+KA+ VF M
Sbjct: 178 NCIAQKLFDEM-----------VVRDVVSWNT-------LISGYCFSGMVDKARMVFDGM 219
Query: 123 LRKDKFTWTAMIVGLA--------------------------ISGHGDT-----ALDMFS 151
+ K+ +W+ MI G A I+G+ A+++F
Sbjct: 220 MEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADAIELFR 279
Query: 152 QML-RASIRLDEVTYVGVLSACTH 174
QM + ++VT V VLSAC H
Sbjct: 280 QMQHEGGLAPNDVTLVSVLSACAH 303
>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 697
Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 65/195 (33%), Positives = 107/195 (54%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A ++F M ++ +W T++ GY G V+ A F QMP +D + WT MI Y +
Sbjct: 317 MDSARKLFEEMPERNTATWNTMIDGYARLGNVESAELLFNQMPTKDIISWTTMITCYSQN 376
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
++++AL ++ EM+ + I DE T + + N D+++G
Sbjct: 377 KQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIG 436
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+DMY KCG ++ + +F+K+ K+ + W A+I GLA+ G+ + AL MF+ M R I
Sbjct: 437 SALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIM 496
Query: 160 LDEVTYVGVLSACTH 174
+ VT++ +LSACTH
Sbjct: 497 PNGVTFISILSACTH 511
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 71/155 (45%), Gaps = 18/155 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T +V Y + AR+ F +M ERD WTAM+ RV A LF EM N
Sbjct: 274 TALVDFYSKLEILSEARKVFDEMCERDAFAWTAMVSALARVGDMDSARKLFEEMPERNT- 332
Query: 80 RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAI 139
T+N +ID Y + G+VE A+ +F +M KD +WT MI +
Sbjct: 333 ----------ATWN-------TMIDGYARLGNVESAELLFNQMPTKDIISWTTMITCYSQ 375
Query: 140 SGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+ AL ++S+M I DEVT V SAC H
Sbjct: 376 NKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAH 410
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 11/147 (7%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTA-MIDGYLRVNRFREA 66
F M+N +V + ++ G++ G A Q + M E VL T+ ++ F A
Sbjct: 191 FTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVKACTFMCA 250
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKD 126
+ L + + ++ F + +FV AL+D Y K + +A++VF +M +D
Sbjct: 251 VELGQMVHCHIWKKG----------FESHLFVQTALVDFYSKLEILSEARKVFDEMCERD 300
Query: 127 KFTWTAMIVGLAISGHGDTALDMFSQM 153
F WTAM+ LA G D+A +F +M
Sbjct: 301 AFAWTAMVSALARVGDMDSARKLFEEM 327
>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 70/196 (35%), Positives = 106/196 (54%), Gaps = 22/196 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A E+F M ++++SW+T+V GY G +D+AR F + P ++ VLWT +I GY
Sbjct: 235 MDRAFELFERMPQRNIVSWSTMVCGYSKGGDMDMARVLFDRCPAKNVVLWTTIIAGYAEK 294
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGI-------------------- 100
REA L+ +M+ + +R D+ + IL +G+
Sbjct: 295 GFVREATELYGKMEEAGLRPDDGFLISILAACAESGMLGLGKRIHASMRRWRFRCGTKVL 354
Query: 101 -ALIDMYCKCGDVEKAQRVFWKML-RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
A IDMY KCG ++ A VF M+ +KD +W +MI G A+ GHG+ AL++FS+M+
Sbjct: 355 NAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSRMVPEGF 414
Query: 159 RLDEVTYVGVLSACTH 174
D T+VG+L ACTH
Sbjct: 415 EPDTYTFVGLLCACTH 430
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 18/172 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+ +F MK +DV++W +++ G + G+++ A + F +MPERD V W M+DGY +
Sbjct: 176 AMSLFLAMKERDVVTWNSMIGGLVRCGELEGACKLFDEMPERDMVSWNTMLDGYAKAGEM 235
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
A LF M NI ++T ++ Y K GD++ A+ +F +
Sbjct: 236 DRAFELFERMPQRNIV--SWST----------------MVCGYSKGGDMDMARVLFDRCP 277
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
K+ WT +I G A G A +++ +M A +R D+ + +L+AC +
Sbjct: 278 AKNVVLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAACAES 329
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 92 FNNDIFVGIALIDMYCKCGD--VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDM 149
F DIFV +LID Y +CG ++ A +F M +D TW +MI GL G + A +
Sbjct: 151 FYGDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEGACKL 210
Query: 150 FSQM 153
F +M
Sbjct: 211 FDEM 214
>gi|345505216|gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pastoris]
Length = 617
Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 74/194 (38%), Positives = 109/194 (56%), Gaps = 22/194 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +DV++W T++ GY G V A+ F QMP RD V + +M+ GY++
Sbjct: 275 AKDLFDAMPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVSYNSMMAGYVQNKYH 334
Query: 64 REALTLFREMQT-SNIRRDEFTTVRILTTF-----------------NNDIFVG----IA 101
EAL +F +M+ S++ DE T V +L+ F+G +A
Sbjct: 335 MEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVA 394
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMY KCG ++ A VF + K W AMI GLAI G G++A DM Q+ R SI+ D
Sbjct: 395 LIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPD 454
Query: 162 EVTYVGVLSACTHN 175
++T+VGVL+AC+H+
Sbjct: 455 DITFVGVLNACSHS 468
Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 63/172 (36%), Positives = 91/172 (52%), Gaps = 22/172 (12%)
Query: 4 ALEIFGNMKN--KDVISWTTIVSGYINRGQ-VDIARQYFAQMPERDYVLWTAMIDGYLRV 60
A E+F M K++ISW +I+SGY VDIA FA+MPE+D + W +MIDGY++
Sbjct: 210 ARELFDLMPREVKNLISWNSIISGYAQTSDGVDIASNLFAEMPEKDLISWNSMIDGYVKH 269
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
R +A LF M RRD T +ID Y K G V +A+ +F
Sbjct: 270 GRIEDAKDLFDAMP----RRDVVTWA--------------TMIDGYAKLGFVHQAKTLFD 311
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS-IRLDEVTYVGVLSA 171
+M +D ++ +M+ G + + AL++FS M + S + DE T V VLSA
Sbjct: 312 QMPHRDVVSYNSMMAGYVQNKYHMEALEIFSDMEKESHLSPDETTLVIVLSA 363
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 58/203 (28%), Positives = 88/203 (43%), Gaps = 37/203 (18%)
Query: 1 MGF---ALEIFGNMKN----KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAM 53
+GF L+I G ++ D+ ++ Y+ G + ARQ F +MP+RD V + +M
Sbjct: 138 LGFVKGGLQIHGILRKTGLCSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSFNSM 197
Query: 54 IDGYLRVNRFREALTLFREM------------------QTS---NIRRDEFTTVRILTTF 92
IDGY++ A LF M QTS +I + F +
Sbjct: 198 IDGYVKRGLIESARELFDLMPREVKNLISWNSIISGYAQTSDGVDIASNLFAEMP----- 252
Query: 93 NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
D+ ++ID Y K G +E A+ +F M R+D TW MI G A G A +F Q
Sbjct: 253 EKDLISWNSMIDGYVKHGRIEDAKDLFDAMPRRDVVTWATMIDGYAKLGFVHQAKTLFDQ 312
Query: 153 MLRASIRLDEVTYVGVLSACTHN 175
M D V+Y +++ N
Sbjct: 313 MPHR----DVVSYNSMMAGYVQN 331
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 21/131 (16%)
Query: 46 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL---------------- 89
D LW A+I + ++AL LF M + + D+F+ +L
Sbjct: 89 DPFLWNAVIKSHSHGKDPKQALLLFCLMLENGVSVDKFSMSLVLKACSRLGFVKGGLQIH 148
Query: 90 -----TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGD 144
T +D+F+ LI +Y KCG + A+++F +M ++D ++ +MI G G +
Sbjct: 149 GILRKTGLCSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSFNSMIDGYVKRGLIE 208
Query: 145 TALDMFSQMLR 155
+A ++F M R
Sbjct: 209 SARELFDLMPR 219
>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 600
Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 65/195 (33%), Positives = 107/195 (54%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A ++F M ++ +W T++ GY G V+ A F QMP +D + WT MI Y +
Sbjct: 220 MDSARKLFEEMPERNTATWNTMIDGYTRLGNVESAELLFNQMPTKDIISWTTMITCYSQN 279
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
++++AL ++ EM+ + I DE T + + N D+++G
Sbjct: 280 KQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIG 339
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+DMY KCG ++ + +F+K+ K+ + W A+I GLA+ G+ + AL MF+ M R I
Sbjct: 340 SALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIM 399
Query: 160 LDEVTYVGVLSACTH 174
+ VT++ +LSACTH
Sbjct: 400 PNGVTFISILSACTH 414
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 71/155 (45%), Gaps = 18/155 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T +V Y + AR+ F +M ERD WTAM+ RV A LF EM N
Sbjct: 177 TALVDFYSKLEILSEARKVFDEMCERDAFAWTAMLSALARVGDMDSARKLFEEMPERNT- 235
Query: 80 RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAI 139
T+N +ID Y + G+VE A+ +F +M KD +WT MI +
Sbjct: 236 ----------ATWN-------TMIDGYTRLGNVESAELLFNQMPTKDIISWTTMITCYSQ 278
Query: 140 SGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+ AL ++S+M I DEVT V SAC H
Sbjct: 279 NKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAH 313
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 11/147 (7%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTA-MIDGYLRVNRFREA 66
F M+N +V + ++ G++ G A Q + M E VL T+ ++ F A
Sbjct: 94 FTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVKACTFMCA 153
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKD 126
+ L + + ++ F + +FV AL+D Y K + +A++VF +M +D
Sbjct: 154 VELGQMVHCHIWKKG----------FESHLFVQTALVDFYSKLEILSEARKVFDEMCERD 203
Query: 127 KFTWTAMIVGLAISGHGDTALDMFSQM 153
F WTAM+ LA G D+A +F +M
Sbjct: 204 AFAWTAMLSALARVGDMDSARKLFEEM 230
>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Vitis vinifera]
Length = 677
Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 68/193 (35%), Positives = 107/193 (55%), Gaps = 21/193 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M ++ SW ++++G++ G +D AR+ F QMPE++ V WT MI+G+ +
Sbjct: 227 AASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDH 286
Query: 64 REALTLFREMQTSNIRRDEFTTV----------------RILTTFNNDIF-----VGIAL 102
+AL++F M +R ++ T V RI +++ F +G AL
Sbjct: 287 EKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTAL 346
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY KCG+++ A RVF + KD TW+ MI G AI G D AL F +M A I DE
Sbjct: 347 VDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDE 406
Query: 163 VTYVGVLSACTHN 175
V ++ +L+AC+H+
Sbjct: 407 VIFLAILTACSHS 419
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 53/241 (21%), Positives = 84/241 (34%), Gaps = 87/241 (36%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T ++S + +D A F + ++ A+I G +RF +++ F M +IR
Sbjct: 76 TQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIR 135
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMY------------ 106
D T +L + D FV ++L+DMY
Sbjct: 136 PDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQL 195
Query: 107 -----------------------CKCGDVEKAQRVF----------W------------- 120
CK GD+ KA +F W
Sbjct: 196 FDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDL 255
Query: 121 --------KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+M K+ +WT MI G + +G + AL MF +ML +R +++T V L AC
Sbjct: 256 DRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLAC 315
Query: 173 T 173
T
Sbjct: 316 T 316
>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 577
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 103/184 (55%), Gaps = 22/184 (11%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQM-PERDYVLWTAMIDGYLRVNRFREALTLFRE 72
KDV+SW I+ GY Q+ A++ F M R+ V W MI Y++ F A+++F++
Sbjct: 136 KDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQ 195
Query: 73 MQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGD 111
MQ+ N++ E T V +L+ + D+ +G ALIDMYCKCG
Sbjct: 196 MQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGA 255
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+E A VF + RK+ F W ++IVGL ++G G+ A+ F M + I+ D VT+VG+LS
Sbjct: 256 LEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSG 315
Query: 172 CTHN 175
C+H+
Sbjct: 316 CSHS 319
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 79/172 (45%), Gaps = 19/172 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M +DV++ ++S G V+ AR F M ER+ W +MI Y ++
Sbjct: 64 AKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITCYCKLGDI 123
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM- 122
A +F + V+ + ++N A+ID YCK + AQ +F M
Sbjct: 124 NSARLMF-----------DCNPVKDVVSWN-------AIIDGYCKSKQLVAAQELFLLMG 165
Query: 123 LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
++ TW MI G TA+ MF QM +++ EVT V +LSAC H
Sbjct: 166 SARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAH 217
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
F D+ + L+D Y K GD++ A+RVF M R+D AMI L+ G+ + A ++F
Sbjct: 41 FEYDMILQTGLLDFYAKVGDLKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFD 100
Query: 152 QM 153
M
Sbjct: 101 NM 102
>gi|255548718|ref|XP_002515415.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545359|gb|EEF46864.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 507
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 103/194 (53%), Gaps = 21/194 (10%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A IF +M+ +D +SW +++S YI G ++ F +MP ++ V W MI G L+
Sbjct: 165 LARSIFDSMEVRDFVSWNSMISAYIRAGDMEKGLALFREMPVKNTVTWNTMITGCLQSEH 224
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIA 101
F L LF EM+T+N D T +L+T + V A
Sbjct: 225 FGMVLDLFEEMKTANYIPDYLTVTSVLSTCGHLGSLGTGIKIHIYAIDNGLVSSPHVTTA 284
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMY KCG +E+ VF K KD + W A+I LA+ GHG AL +F +M + I+ D
Sbjct: 285 LIDMYSKCGSIEQGLHVFCKSQVKDIYCWNALISALALHGHGYAALKVFGKMRKNHIQPD 344
Query: 162 EVTYVGVLSACTHN 175
++T++G+++AC+H+
Sbjct: 345 DITFIGIINACSHS 358
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 55/141 (39%), Gaps = 23/141 (16%)
Query: 34 IARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL---- 89
+A YF +P + W +I + + +A+ + ++Q D +T +L
Sbjct: 4 LACNYF--LPSSEVKKWNEIIRKQMHMGNGAQAILTYLKVQELGFHADNYTFPILLKAAG 61
Query: 90 -----------------TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA 132
T F FV AL++MY + A +VF M KD W +
Sbjct: 62 RICASKIGFALHGQTIKTGFCAHAFVQTALVNMYGNLHCIGDAFKVFEIMPVKDLIAWNS 121
Query: 133 MIVGLAISGHGDTALDMFSQM 153
M+ A + D A ++F+ M
Sbjct: 122 MLDAYASNAQMDYASNLFNSM 142
>gi|449452160|ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Cucumis sativus]
Length = 532
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 107/196 (54%), Gaps = 21/196 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A ++F M +SWT ++ GY N G VD AR+ F +D +W AMI GY++
Sbjct: 156 MRSARQVFDEMPELSAVSWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMISGYVQN 215
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVG 99
N F+E L +FR MQ + + DE V IL+ + + V
Sbjct: 216 NCFKEGLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDTGIWIHRYLGRLGLPLTLRVS 275
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
LIDMY KCG ++ A+ +F +M ++D W AMI G+A+ G G+ A+ +F +M +A I+
Sbjct: 276 TGLIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGIK 335
Query: 160 LDEVTYVGVLSACTHN 175
D +T++ VL+AC+++
Sbjct: 336 PDNITFIAVLAACSNS 351
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 70/199 (35%), Gaps = 56/199 (28%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFT----- 84
G + A + F + ++ MI L F A+ +F + + I D +T
Sbjct: 53 GSLSHAFKLFQHIQHPTICIFNTMIKALLLRGEFLNAIAVFSAIFRNGIHPDTYTLPYVL 112
Query: 85 ------------------TVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKD 126
T+++ + N FVG +L+ MY ++ A++VF +M
Sbjct: 113 KASARMTNIHLGESIHACTIKLGSAVNE--FVGNSLLVMYRSFDNMRSARQVFDEMPELS 170
Query: 127 KFTWTAMIVGLAISGHGDTA-------------------------------LDMFSQMLR 155
+WT MI G A G DTA L MF M
Sbjct: 171 AVSWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCFKEGLHMFRLMQL 230
Query: 156 ASIRLDEVTYVGVLSACTH 174
+ DE V +LSAC H
Sbjct: 231 TEVEPDEAIIVTILSACAH 249
>gi|242052493|ref|XP_002455392.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
gi|241927367|gb|EES00512.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
Length = 506
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 104/192 (54%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M +DV++W +++GY+ G + AR+ F MPER+ V WT +I GY ++ R
Sbjct: 133 ARSVFHEMAVRDVVAWNVMIAGYVKAGDLAHARELFDAMPERNVVSWTTVIGGYAQMRRP 192
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
EA+ +FR MQ I D + +L+ +I + ++
Sbjct: 193 EEAVEVFRRMQVEGIEPDGVALLSVLSACGDLGAVDLGEWVHRFVVRRGLRQEIPLMNSI 252
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG +EKA VF M K TWT +I G A+ G G A++MF +M R ++ ++
Sbjct: 253 IDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQAVEMFRRMERENMAPND 312
Query: 163 VTYVGVLSACTH 174
VT++ +LSAC+H
Sbjct: 313 VTFLAILSACSH 324
Score = 43.1 bits (100), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 94 NDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+D V +L+ +YC C V A+ VF +M +D W MI G +G A ++F M
Sbjct: 112 SDTHVSASLVQLYCTCRHVADARSVFHEMAVRDVVAWNVMIAGYVKAGDLAHARELFDAM 171
>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 738
Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 66/193 (34%), Positives = 112/193 (58%), Gaps = 21/193 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M FA +F +D +S+T +++GY+++G +D AR+ F ++P +D V W AMI GY++
Sbjct: 182 MDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQS 241
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
RF EA+ F EMQ +N+ ++ T V +L+ F +++ +
Sbjct: 242 GRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLT 301
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMYCKCG+ + A+ +F + KD +W MI G + + AL +F MLR++++
Sbjct: 302 NALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVK 361
Query: 160 LDEVTYVGVLSAC 172
++VT++G+L AC
Sbjct: 362 PNDVTFLGILHAC 374
Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats.
Identities = 62/176 (35%), Positives = 97/176 (55%), Gaps = 23/176 (13%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
++ Y G+ DIAR+ F + E+D + W MI GY ++ + EAL LF M SN++ +
Sbjct: 304 LIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPN 363
Query: 82 EFTTVRILTTF----------------------NNDIFVGIALIDMYCKCGDVEKAQRVF 119
+ T + IL +++ + +LIDMY KCG +E A+RVF
Sbjct: 364 DVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVF 423
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI-RLDEVTYVGVLSACTH 174
M ++ +W AM+ G A+ GH + AL +FS+M+ + R D++T+VGVLSACT
Sbjct: 424 RSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQ 479
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 43/74 (58%)
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
ALI Y G ++ A+R+F ++ KD +W AMI G SG + A+ F +M A++
Sbjct: 202 ALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLP 261
Query: 161 DEVTYVGVLSACTH 174
++ T V VLSAC H
Sbjct: 262 NKSTMVVVLSACGH 275
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 10 NMKNKDVIS-WTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALT 68
N++N S WT+++ Y G ++ A + F M R+ W AM+ G+ AL
Sbjct: 393 NLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALA 452
Query: 69 LFREMQTSNI-RRDEFTTVRILT 90
LF EM + R D+ T V +L+
Sbjct: 453 LFSEMVNKGLFRPDDITFVGVLS 475
Score = 39.3 bits (90), Expect = 0.57, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 4 ALEIFGNMKNK-----DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVL------WTA 52
AL +F M NK D I++ ++S G VD+ QYF M + DY + +
Sbjct: 450 ALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQ-DYGISPKLQHYGC 508
Query: 53 MIDGYLRVNRFREALTLFREMQ 74
MID R +F EA L + M+
Sbjct: 509 MIDLLARAEKFEEAEILMKNME 530
>gi|347954504|gb|AEP33752.1| chloroplast biogenesis 19, partial [Lobularia maritima]
Length = 496
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 106/189 (56%), Gaps = 21/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F +M+ K+ ++W T++ GY+ +G++D A + F +MPER + WTAMI+G+++ EA
Sbjct: 127 VFDHMEGKNSMTWNTMIDGYMRKGKIDDAYKLFDEMPERGLISWTAMINGFVKKGFHEEA 186
Query: 67 LTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDM 105
L FREMQ+S + D + +L F N++ V + ID+
Sbjct: 187 LVWFREMQSSGVEPDYVAIIAVLAACTNLGALSFGLWVHRYLVSRDFRNNVRVNNSSIDL 246
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
+C+CG VE AQ VF M ++ +W ++IV + +GH D +L F +M + + VT+
Sbjct: 247 HCRCGCVELAQPVFDHMEKRTVVSWNSVIVVFSANGHADESLVYFRRMQEEGFKPNAVTF 306
Query: 166 VGVLSACTH 174
G L+AC+H
Sbjct: 307 TGALTACSH 315
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 69/182 (37%), Gaps = 55/182 (30%)
Query: 48 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFN-------------- 93
+ WT+ I R R EA F +M+ + + + T + +L+
Sbjct: 33 ISWTSRITLLSRNGRLAEAAKEFSDMRFAGVEPNHITFIALLSGCGDFSSGSESFGDLLH 92
Query: 94 ----------NDIFVGIALIDMYCKCGDVEKAQRVFWKM---------------LRKDK- 127
N + VG A+I MY K G V KA+ VF M +RK K
Sbjct: 93 GYACKLGLDRNHVMVGTAIIGMYSKHGRVSKARLVFDHMEGKNSMTWNTMIDGYMRKGKI 152
Query: 128 ---------------FTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+WTAMI G G + AL F +M + + D V + VL+AC
Sbjct: 153 DDAYKLFDEMPERGLISWTAMINGFVKKGFHEEALVWFREMQSSGVEPDYVAIIAVLAAC 212
Query: 173 TH 174
T+
Sbjct: 213 TN 214
>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Glycine max]
Length = 617
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 104/191 (54%), Gaps = 23/191 (12%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M +DVISWT ++ Y G + AR F +P +D V WTAM+ GY + +A
Sbjct: 167 VFDEMPERDVISWTGLIVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDA 226
Query: 67 LTLFREMQTSNIRRDEFTTVRILTT-----------------------FNNDIFVGIALI 103
L +FR ++ + DE T V +++ +++ VG ALI
Sbjct: 227 LEVFRRLRDEGVEIDEVTLVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALI 286
Query: 104 DMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEV 163
DMY KCG+VE+A VF M ++ F++++MIVG AI G A+ +F ML ++ + V
Sbjct: 287 DMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHV 346
Query: 164 TYVGVLSACTH 174
T+VGVL+AC+H
Sbjct: 347 TFVGVLTACSH 357
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 80/193 (41%), Gaps = 53/193 (27%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFT---------T 85
R F+Q+ + WTA+I Y +AL+ + M+ + FT
Sbjct: 62 PRLLFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAA 121
Query: 86 VR-------------ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR-------- 124
VR +L F++D++V A+IDMY KCG + A+ VF +M
Sbjct: 122 VRHSALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTG 181
Query: 125 -----------------------KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
KD TWTAM+ G A + AL++F ++ + +D
Sbjct: 182 LIVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEID 241
Query: 162 EVTYVGVLSACTH 174
EVT VGV+SAC
Sbjct: 242 EVTLVGVISACAQ 254
>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 103/180 (57%), Gaps = 21/180 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV T++V Y G ++ A + F +P+++ V WTA+I GY+ V +FREA+ +FR +
Sbjct: 146 DVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLL 205
Query: 75 TSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVE 113
N+ D FT VR+L+ ++FVG +L+DMY KCG++E
Sbjct: 206 EMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNME 265
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
KA+ VF M KD +W AMI G A++G A+D+F QM R +++ D T VGVLSAC
Sbjct: 266 KARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACA 325
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 96/182 (52%), Gaps = 21/182 (11%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
++V T++V Y G ++ AR F MPE+D V W AMI GY +EA+ LF +M
Sbjct: 246 RNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQM 305
Query: 74 QTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDV 112
Q N++ D +T V +L+ F + +G ALID+Y KCG +
Sbjct: 306 QRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSM 365
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+A VF M KD+ W A+I GLA++G+ + +F Q+ + I+ D T++G+L C
Sbjct: 366 SRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGC 425
Query: 173 TH 174
TH
Sbjct: 426 TH 427
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 21/160 (13%)
Query: 36 RQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFT----------- 84
R F Q+ + + LW MI G + + F +A+ + M++ + FT
Sbjct: 66 RFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARL 125
Query: 85 ----------TVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
T+ + F+ D+FV +L+ +Y KCG +E A +VF + K+ +WTA+I
Sbjct: 126 LDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAII 185
Query: 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
G G A+DMF ++L ++ D T V VLSACT
Sbjct: 186 SGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQ 225
>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240 [Vitis vinifera]
Length = 565
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 106/194 (54%), Gaps = 22/194 (11%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
L+ F + N +VI T IV Y G + AR F +MP R+ V W +MI Y + +
Sbjct: 235 MGLDPFQSNSNFNVILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQ 294
Query: 63 FREALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIA 101
EAL LF +M+ + D+ T + ++ T +D +G A
Sbjct: 295 ANEALDLFSDMRIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDDTAIGTA 354
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR-ASIRL 160
L+DMY K GD E+AQ+VF ++ +KD WT++I+GLA+ GHG+ AL F +M ++
Sbjct: 355 LVDMYAKSGDAERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQEDTALIP 414
Query: 161 DEVTYVGVLSACTH 174
DE+TY+GVLSAC+H
Sbjct: 415 DEITYIGVLSACSH 428
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 84/183 (45%), Gaps = 23/183 (12%)
Query: 14 KDVISWTTIV--SGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFR 71
+DVI + +V Y + G ++ A+ F Q+ +W +MI GY EALT++R
Sbjct: 35 QDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSLYIWNSMIKGYSISESPDEALTMYR 94
Query: 72 EMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIALIDMYCKCG 110
EM+ D FT +L T F D++ AL+ MY CG
Sbjct: 95 EMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNCIVKTGFEVDVYAATALLQMYAACG 154
Query: 111 DVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLS 170
D+E A +VF + + + WT++I G + A+ ++ M S+ +E+T V VL
Sbjct: 155 DMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEAVRVYKDMELWSVAPNEITMVNVLV 214
Query: 171 ACT 173
AC
Sbjct: 215 ACA 217
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 66/149 (44%), Gaps = 19/149 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE-----RDYVLWTAMIDGYL 58
A ++F ++ KDV +WT+++ G G + A +F +M E D + + ++
Sbjct: 368 AQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQEDTALIPDEITYIGVLSACS 427
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
V + + F M+ N+ E TT ++D+ + G + +A+R+
Sbjct: 428 HVGKVEDGKNHFISMK--NVHGIEPTTQHYG-----------CMVDLLSRAGRLGEAERL 474
Query: 119 FWKM-LRKDKFTWTAMIVGLAISGHGDTA 146
KM + + W+A++ G I + D A
Sbjct: 475 VEKMPVEPNTAIWSALLNGCKIYQNIDVA 503
>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats.
Identities = 71/195 (36%), Positives = 113/195 (57%), Gaps = 22/195 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A +F M +DV++ T ++S Y ++G V+ A F+++ +D V WTAMIDG++R
Sbjct: 198 LGDARRVFEEMP-EDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRN 256
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVG 99
AL FR MQ N+R +EFT V +L+ + ++FVG
Sbjct: 257 EETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVG 316
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALI+MY +CG +++AQ VF +M +D T+ MI GL+++G A+++F M+ +R
Sbjct: 317 NALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLR 376
Query: 160 LDEVTYVGVLSACTH 174
VT+VGVL+AC+H
Sbjct: 377 PTNVTFVGVLNACSH 391
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 50/194 (25%), Positives = 81/194 (41%), Gaps = 51/194 (26%)
Query: 32 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT 91
+D A + F + L+TA+IDG++ + EA+ L+ M +I D + IL
Sbjct: 97 IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKA 156
Query: 92 ---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKM-------- 122
F+++ V + ++++Y KCG++ A+RVF +M
Sbjct: 157 CGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAST 216
Query: 123 ----------------------LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
RKD WTAMI G + + AL+ F M ++R
Sbjct: 217 VMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRP 276
Query: 161 DEVTYVGVLSACTH 174
+E T V VLSAC+
Sbjct: 277 NEFTIVCVLSACSQ 290
Score = 43.5 bits (101), Expect = 0.034, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 40/80 (50%)
Query: 93 NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
+ D F+ L+ KC ++ A R+F + + +TA+I G SG+ A+ ++S+
Sbjct: 78 SQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSR 137
Query: 153 MLRASIRLDEVTYVGVLSAC 172
ML SI D +L AC
Sbjct: 138 MLHESILPDNYLMASILKAC 157
>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 742
Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats.
Identities = 72/196 (36%), Positives = 103/196 (52%), Gaps = 22/196 (11%)
Query: 2 GFALEIFGNM-KNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
G A E+F + + + W ++ GY G VDIAR F QM + D + + ++I GY+
Sbjct: 289 GRAREVFDALGRGRGPQPWNAMIDGYCKVGHVDIARSLFDQMEDHDVITFNSLITGYIHG 348
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
R REAL LF +M+ + D FT V +LT D+++G
Sbjct: 349 GRLREALLLFTKMRRHGLGADNFTMVGLLTASASLGALPQGRALHACIEQRLVERDVYLG 408
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+DMY KCG VE+A F +M +D TW+AMI GLA +G G AL+ F M
Sbjct: 409 TALLDMYMKCGRVEEAMVAFKQMSVRDVHTWSAMIGGLAFNGMGKAALEHFFWMKCDGFH 468
Query: 160 LDEVTYVGVLSACTHN 175
+ VTY+ VL+AC+H+
Sbjct: 469 ANSVTYIAVLTACSHS 484
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 63/174 (36%), Positives = 84/174 (48%), Gaps = 22/174 (12%)
Query: 2 GFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVN 61
G A F KDV++WTT++SG G +D AR+ A+ P R+ V WT +I GY R
Sbjct: 157 GDARRAFDEASVKDVVAWTTVISGLAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAG 216
Query: 62 RFREALTLFREMQTSNIRRDEFTTVRILTTFNN----------DIFVG-----------I 100
R EA+ F M + I DE T + +L+ + VG +
Sbjct: 217 RAAEAVDCFNSMLSDGIAPDEVTVIGMLSACGQLKDLNFGCSLHMLVGDKRMLMSDKLVV 276
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLR-KDKFTWTAMIVGLAISGHGDTALDMFSQM 153
ALIDMY KCGD +A+ VF + R + W AMI G GH D A +F QM
Sbjct: 277 ALIDMYAKCGDTGRAREVFDALGRGRGPQPWNAMIDGYCKVGHVDIARSLFDQM 330
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML 154
D+ +I K G ++ A+R+ + ++ TWT +I G + +G A+D F+ ML
Sbjct: 170 DVVAWTTVISGLAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSML 229
Query: 155 RASIRLDEVTYVGVLSAC 172
I DEVT +G+LSAC
Sbjct: 230 SDGIAPDEVTVIGMLSAC 247
>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 628
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 102/193 (52%), Gaps = 21/193 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M K ++S T +++ Y G++D AR F M ERD V W MIDGY +
Sbjct: 178 AQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMP 237
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTF-----------------NN----DIFVGIAL 102
EAL LFR M + + +E T + +L+ NN ++ VG AL
Sbjct: 238 NEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTAL 297
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY KCG +E A+ VF K+ KD W +MIVG A+ G AL +F M R +
Sbjct: 298 VDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTN 357
Query: 163 VTYVGVLSACTHN 175
+T++G+LSAC H+
Sbjct: 358 ITFIGILSACGHS 370
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 80/195 (41%), Gaps = 48/195 (24%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT 85
Y + G++D + F + WTA+I G+ +AL + +M T + + FT
Sbjct: 72 YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 131
Query: 86 VRILT-----------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK--- 125
IL F++D++V L+D+Y + GDV AQ++F M K
Sbjct: 132 SSILKLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLV 191
Query: 126 ----------------------------DKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
D W MI G +G + AL +F +ML+A
Sbjct: 192 SLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAK 251
Query: 158 IRLDEVTYVGVLSAC 172
+ +EVT + VLSAC
Sbjct: 252 AKPNEVTVLSVLSAC 266
>gi|115477555|ref|NP_001062373.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|50725675|dbj|BAD33141.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113624342|dbj|BAF24287.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|215697775|dbj|BAG91968.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 581
Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats.
Identities = 67/177 (37%), Positives = 106/177 (59%), Gaps = 22/177 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+++VS Y G V+ AR+ F +MPER+ V WT+MI G + RF+EA+ LFR+MQ + ++
Sbjct: 235 SSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVK 294
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
D+ T ++++ ++ V +LIDMY KCGDV KA ++
Sbjct: 295 ADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQI 354
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML-RASIRLDEVTYVGVLSACTH 174
F + ++D FTWT MI+G A++G ALD+F+QM + +EV ++GVL+AC+H
Sbjct: 355 FHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSH 411
Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 28/167 (16%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDY---------VLWTAMIDGYLRVNRFRE 65
DV+SW TI++GYI G + A Q F QM + VL G ++V
Sbjct: 160 DVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCH 219
Query: 66 ALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK 125
AL +L F + ++G +L+ MY KCG VE+A+RVF +M +
Sbjct: 220 ALV-------------------VLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPER 260
Query: 126 DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+ WT+MI G SG A+D+F M A ++ D+ T V+S+C
Sbjct: 261 NVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSC 307
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 82 EFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--KDKFTWTAMIVGLAI 139
+F + + + +D FV ALI+MY C A+ V R D +W +I G
Sbjct: 114 QFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVLDSAPRWASDVVSWNTIIAGYIR 173
Query: 140 SGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
G + AL F QM + +RLDEVT + VL AC
Sbjct: 174 GGMPNKALQSFHQMAKEQVRLDEVTLLNVLVAC 206
Score = 36.2 bits (82), Expect = 4.5, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 33/66 (50%)
Query: 9 GNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALT 68
G+ K++ +++ Y G V+ A Q F + +RD WT MI G+ EAL
Sbjct: 325 GHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALD 384
Query: 69 LFREMQ 74
LF +M+
Sbjct: 385 LFAQME 390
>gi|347954510|gb|AEP33755.1| chloroplast biogenesis 19, partial [Olimarabidopsis pumila]
Length = 475
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 104/189 (55%), Gaps = 21/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M +K+ ++W T++ GY+ GQV A + F +MPE D + WTAM++G+++ EA
Sbjct: 106 VFDYMDDKNSVTWNTMIDGYMRSGQVHNAVKLFDKMPEPDLISWTAMVNGFVKKGFHEEA 165
Query: 67 LTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDM 105
L FREMQ S ++ D + L F N++ V +LID+
Sbjct: 166 LVWFREMQISGVKPDYVAIIAALNACTNLGALSLGLWVHRYVMSQDFKNNVRVSNSLIDL 225
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
YC+CG VE A+ VF KM ++ +W ++IVG A +G+ +L F +M + + VT+
Sbjct: 226 YCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPNAVTF 285
Query: 166 VGVLSACTH 174
G L+AC+H
Sbjct: 286 TGALTACSH 294
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 69/193 (35%), Gaps = 55/193 (28%)
Query: 37 QYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFN--- 93
Q Q V WT+ I R EA F +M+ + + T + +L+
Sbjct: 1 QKHNQSTSETIVSWTSRITLLTRSAXLAEAAKEFADMRLAGVEPTHITFIALLSGCGDFP 60
Query: 94 ---------------------NDIFVGIALIDMYCKCGDVEKAQRVF----------W-- 120
N + VG A++ MY K G V+KA+ VF W
Sbjct: 61 SGSETLGDLLHGYACKLGLDRNHVMVGTAILGMYSKRGRVKKARLVFDYMDDKNSVTWNT 120
Query: 121 -------------------KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
KM D +WTAM+ G G + AL F +M + ++ D
Sbjct: 121 MIDGYMRSGQVHNAVKLFDKMPEPDLISWTAMVNGFVKKGFHEEALVWFREMQISGVKPD 180
Query: 162 EVTYVGVLSACTH 174
V + L+ACT+
Sbjct: 181 YVAIIAALNACTN 193
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 18/149 (12%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDY----VLWTAMIDGYL 58
FA E+F M+ + V+SW +++ G+ G + YF +M E + V +T +
Sbjct: 234 FAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPNAVTFTGALTACS 293
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
V E L F+ M +RD + RI L+D+Y + G +E A +V
Sbjct: 294 HVGLVDEGLRFFQSM-----KRDYNISPRIEHYG--------CLVDLYSRAGRLEDALKV 340
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
M K ++ A HG+ +
Sbjct: 341 VQSMPMKPNEVVIGSLLA-ACRNHGNNTV 368
>gi|225430506|ref|XP_002283354.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 517
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 100/192 (52%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A IF + KD++SW +++ N G + AR F MP+++ + W MI GYL +
Sbjct: 170 ARSIFDRIHAKDIVSWNSMILACTNVGDMGNARNLFDVMPKKNVITWNTMISGYLHAQLY 229
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
EA+ LF EM+ N D T +L+ + V +L
Sbjct: 230 AEAVDLFDEMKAGNHEADHLTVTLVLSACAHLGWLGKGTEMHVYAQDHRLASSPHVATSL 289
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG ++++ VF+K KD + W A+I GLA+ G+G A+ + +M +R DE
Sbjct: 290 IDMYAKCGTIQRSLEVFYKSQVKDIYCWNAIISGLALHGYGHAAVKLLDKMRDNGVRPDE 349
Query: 163 VTYVGVLSACTH 174
+T++G+LSAC+H
Sbjct: 350 ITFIGLLSACSH 361
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 82/171 (47%), Gaps = 18/171 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M KDV+ W ++++ Y + GQ+D A + F MP +D + MI GY ++ +
Sbjct: 108 ATKVFEEMGVKDVVVWNSMLAAYASCGQMDNAMKLFDNMPLKDLASFNIMISGYAKIGKK 167
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
A ++F + +I ++N+ I + GD+ A+ +F M
Sbjct: 168 AAARSIFDRIHAKDI-----------VSWNSMILACTNV-------GDMGNARNLFDVMP 209
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+K+ TW MI G + A+D+F +M + D +T VLSAC H
Sbjct: 210 KKNVITWNTMISGYLHAQLYAEAVDLFDEMKAGNHEADHLTVTLVLSACAH 260
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 90 TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDM 149
T F+ FVG AL+DMY G ++ A +VF +M KD W +M+ A G D A+ +
Sbjct: 83 TGFSGHCFVGTALLDMYSAFGAIDHATKVFEEMGVKDVVVWNSMLAAYASCGQMDNAMKL 142
Query: 150 FSQM 153
F M
Sbjct: 143 FDNM 146
>gi|125562361|gb|EAZ07809.1| hypothetical protein OsI_30067 [Oryza sativa Indica Group]
Length = 642
Score = 132 bits (331), Expect = 8e-29, Method: Composition-based stats.
Identities = 67/177 (37%), Positives = 106/177 (59%), Gaps = 22/177 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+++VS Y G V+ AR+ F +MPER+ V WT+MI G + RF+EA+ LFR+MQ + ++
Sbjct: 147 SSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVK 206
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
D+ T ++++ ++ V +LIDMY KCGDV KA ++
Sbjct: 207 ADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQI 266
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML-RASIRLDEVTYVGVLSACTH 174
F + ++D FTWT MI+G A++G ALD+F+QM + +EV ++GVL+AC+H
Sbjct: 267 FRGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSH 323
Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 28/167 (16%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDY---------VLWTAMIDGYLRVNRFRE 65
DV+SW TI++GYI G + A Q F QM + VL G ++V
Sbjct: 72 DVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCH 131
Query: 66 ALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK 125
AL +L F + ++G +L+ MY KCG VE+A+RVF +M +
Sbjct: 132 ALV-------------------VLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPER 172
Query: 126 DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+ WT+MI G SG A+D+F M A ++ D+ T V+S+C
Sbjct: 173 NVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSC 219
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 82 EFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--KDKFTWTAMIVGLAI 139
+F + + + +D FV ALI+MY C A+ V R D +W +I G
Sbjct: 26 QFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVLDSAPRWASDVVSWNTIIAGYIR 85
Query: 140 SGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
G + AL F QM + +RLDEVT + VL AC
Sbjct: 86 GGMPNKALQSFHQMAKEQVRLDEVTLLNVLVAC 118
Score = 36.6 bits (83), Expect = 4.3, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 33/66 (50%)
Query: 9 GNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALT 68
G+ K++ +++ Y G V+ A Q F + +RD WT MI G+ EAL
Sbjct: 237 GHGLGKELSVKNSLIDMYSKCGDVNKAYQIFRGLTKRDVFTWTVMIMGFAMNGLCVEALD 296
Query: 69 LFREMQ 74
LF +M+
Sbjct: 297 LFAQME 302
>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
Length = 562
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 102/193 (52%), Gaps = 21/193 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M K ++S T +++ Y G++D AR F M ERD V W MIDGY +
Sbjct: 112 AQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMP 171
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTF-----------------NN----DIFVGIAL 102
EAL LFR M + + +E T + +L+ NN ++ VG AL
Sbjct: 172 NEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTAL 231
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY KCG +E A+ VF K+ KD W +MIVG A+ G AL +F M R +
Sbjct: 232 VDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTN 291
Query: 163 VTYVGVLSACTHN 175
+T++G+LSAC H+
Sbjct: 292 ITFIGILSACGHS 304
>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 109/189 (57%), Gaps = 21/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F + DV+SWT++V+GYI G V AR+ F +MPE++ V W+ MI GY + + F +A
Sbjct: 170 VFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKA 229
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDM 105
+ L+ +Q+ + +E V ++ + + ++ +G AL+DM
Sbjct: 230 IELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDM 289
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y +CG ++KA VF ++ +D +WT +I G A+ G+ + AL+ FS+M +A + E+T+
Sbjct: 290 YARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITF 349
Query: 166 VGVLSACTH 174
VLSAC+H
Sbjct: 350 TAVLSACSH 358
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 75/165 (45%), Gaps = 21/165 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV + + ++S IN+ +D A Q F Q+ + ++ + I G+ ++ + + +
Sbjct: 46 DVFAASCLISISINKNLLDYAAQVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSK 105
Query: 75 TSNIRRDEFT---TVRILTT------------------FNNDIFVGIALIDMYCKCGDVE 113
+ + D T V+ T F++D++V +L+ MY GD++
Sbjct: 106 RNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIK 165
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
A VF ++ D +WT+M+ G SG +A +F +M ++
Sbjct: 166 SASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNL 210
Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 67/148 (45%), Gaps = 18/148 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDY----VLWTAMIDGYLR 59
A+ +F + +D +SWTT+++G+ G + A +YF++M + + +TA++
Sbjct: 299 AIWVFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSH 358
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119
L LF M +RD R L + ++D+ + G + +A++
Sbjct: 359 GGLVERGLELFESM-----KRDYRIEPR-LEHYG-------CMVDLLGRAGKLAEAEKFV 405
Query: 120 WKM-LRKDKFTWTAMIVGLAISGHGDTA 146
+M ++ + W A++ I + + A
Sbjct: 406 NEMPMKPNAPIWGALLGACRIHKNSEIA 433
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 86 VRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDT 145
+R T F D+F LI + ++ A +VF+++ + F + + I G + S D
Sbjct: 39 IRAHTIF--DVFAASCLISISINKNLLDYAAQVFYQIQNPNLFIYNSFIRGFSGSKDPDK 96
Query: 146 ALDMFSQMLRASIRLDEVTYVGVLSACT 173
+ + Q R + D +TY ++ ACT
Sbjct: 97 SFHFYVQSKRNGLVPDNLTYPFLVKACT 124
>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
[Vitis vinifera]
Length = 799
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 99/192 (51%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M KD++SW I+SGY+N G++D A+ +F +MPER+ + WT MI G +
Sbjct: 349 ARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFG 408
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
E+L LF M++ ++ + F++ + G AL
Sbjct: 409 EESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNAL 468
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I MY KCG VE A +F M D +W AMI L GHG AL++F ML+ I D
Sbjct: 469 ITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDR 528
Query: 163 VTYVGVLSACTH 174
+T++ VLS C+H
Sbjct: 529 ITFLTVLSTCSH 540
Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 103/229 (44%), Gaps = 56/229 (24%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A ++F M +D +SWTT+++GY+ G++D ARQ+ M E+ V W AMI GY+
Sbjct: 210 MAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHH 269
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIF----------------------- 97
F EAL +FR+M I+ DEFT +L+ N F
Sbjct: 270 GFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFS 329
Query: 98 --VGIALIDMYCKCGDVEKAQRVFWKMLRKD----------------------------- 126
V AL +Y KCG V++A++VF +M KD
Sbjct: 330 LSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPE 389
Query: 127 --KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
TWT MI GLA +G G+ +L +F++M + + G + AC
Sbjct: 390 RNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACA 438
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 95/234 (40%), Gaps = 64/234 (27%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVN 61
A +F ++ D+++ TT+++ + + G ++AR+ F P RD V + AMI GY N
Sbjct: 69 AHHLFDEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNN 128
Query: 62 RFREALTLFREMQTSNIRRDEFTTVRILTTFN---------NDIFVGI------------ 100
A+ LFR++ + R D FT +L I +
Sbjct: 129 DGFGAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVL 188
Query: 101 -ALIDMYCKCG---------DVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDT----- 145
AL+ ++ KC + A+++F +M +D+ +WT MI G +G D
Sbjct: 189 NALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFL 248
Query: 146 --------------------------ALDMFSQMLRASIRLDEVTYVGVLSACT 173
AL+MF +M I+ DE TY VLSAC
Sbjct: 249 DGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACA 302
>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
Length = 575
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 102/193 (52%), Gaps = 21/193 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M K ++S T +++ Y G++D AR F M ERD V W MIDGY +
Sbjct: 125 AQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMP 184
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTF-----------------NN----DIFVGIAL 102
EAL LFR M + + +E T + +L+ NN ++ VG AL
Sbjct: 185 NEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTAL 244
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY KCG +E A+ VF K+ KD W +MIVG A+ G AL +F M R +
Sbjct: 245 VDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTN 304
Query: 163 VTYVGVLSACTHN 175
+T++G+LSAC H+
Sbjct: 305 ITFIGILSACGHS 317
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 80/195 (41%), Gaps = 48/195 (24%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT 85
Y + G++D + F + WTA+I G+ +AL + +M T + + FT
Sbjct: 19 YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 78
Query: 86 VRILT-----------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK--- 125
IL F++D++V L+D+Y + GDV AQ++F M K
Sbjct: 79 SSILKLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLV 138
Query: 126 ----------------------------DKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
D W MI G +G + AL +F +ML+A
Sbjct: 139 SLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAK 198
Query: 158 IRLDEVTYVGVLSAC 172
+ +EVT + VLSAC
Sbjct: 199 AKPNEVTVLSVLSAC 213
>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Glycine max]
Length = 1116
Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats.
Identities = 67/197 (34%), Positives = 105/197 (53%), Gaps = 25/197 (12%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
FA + F + D+ SW I+ G + IAR+ F QMPE++ + W+ MI GY+
Sbjct: 113 FARQAFDEITQPDLPSWNAIIHANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGE 172
Query: 63 FREALTLFREMQT---SNIRRDEFTTVRIL---------------------TTFNNDIFV 98
++ AL+LFR +QT S +R +EFT +L T D+ +
Sbjct: 173 YKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVL 232
Query: 99 GIALIDMYCKCGDVEKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
G +LIDMY KCG +E+A+ +F + KD W+AMI ++ G + L++F++M+
Sbjct: 233 GTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDG 292
Query: 158 IRLDEVTYVGVLSACTH 174
+R + VT+V VL AC H
Sbjct: 293 VRPNAVTFVAVLCACVH 309
Score = 43.5 bits (101), Expect = 0.030, Method: Composition-based stats.
Identities = 46/186 (24%), Positives = 68/186 (36%), Gaps = 56/186 (30%)
Query: 43 PERDYVLWTAMIDGYLRVN----RFREALTLFREMQTSNIRRDEFTTVRILTTFN----- 93
P + +W +I R F AL+L+ M+ + D T +L + N
Sbjct: 20 PNIESFVWNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVLPDLHTFPFLLQSINTPHRG 79
Query: 94 -------------NDIFVGIALIDMYCKCGD----------------------------- 111
ND FV +LI+MY CG
Sbjct: 80 RQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHANAKA 139
Query: 112 --VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS--QMLRAS-IRLDEVTYV 166
+ A+++F +M K+ +W+ MI G G AL +F Q L S +R +E T
Sbjct: 140 GMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMS 199
Query: 167 GVLSAC 172
VLSAC
Sbjct: 200 SVLSAC 205
>gi|212723118|ref|NP_001131685.1| hypothetical protein [Zea mays]
gi|194692242|gb|ACF80205.1| unknown [Zea mays]
gi|414879040|tpg|DAA56171.1| TPA: hypothetical protein ZEAMMB73_730680 [Zea mays]
Length = 590
Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats.
Identities = 80/228 (35%), Positives = 107/228 (46%), Gaps = 54/228 (23%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQ--VDIARQYFAQMPERDYVLWTAMIDGYL 58
MG A E+F M KD SW T++ GY +G VD AR+ F QMPERD V W +MIDGY
Sbjct: 197 MGLAQEMFDEMPQKDTFSWATLIDGYGKQGGAGVDRARELFDQMPERDLVCWNSMIDGYA 256
Query: 59 RVNRFREALTLFREMQTSNI-------------------------------RRDEFTTV- 86
R R EA +LF EM N+ R D V
Sbjct: 257 RHGRMDEARSLFEEMPERNVISWSIVIDGHVSCGEAKEALEYFQSMLRCGLRPDRIAAVG 316
Query: 87 --------------RILTTFN------NDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKD 126
R L ++ +D+ V ALIDMY KCG ++ A +F M +
Sbjct: 317 AVSACAQLGALEQGRWLHSYLEKKKLLSDVVVQTALIDMYVKCGCLDLAMLIFESMAERS 376
Query: 127 KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
TW MIVGL G G A+ +F +M S+ +D+++ +G+L+ACTH
Sbjct: 377 VVTWNVMIVGLGTHGFGLDAVTLFHRMEAESVAVDDLSVLGMLTACTH 424
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 58/146 (39%), Gaps = 27/146 (18%)
Query: 34 IARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT 90
+A FA++P RD W I + R R AL F M+ +R D +T +L
Sbjct: 63 LADVVFARLPLPAARDPFAWNTAIRLHAPA-RPRAALLYFARMRRCGVRPDAYTFPAVLK 121
Query: 91 T---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKM--LRKDK 127
D+F ALI YC+ D+ ++VF + + +D
Sbjct: 122 ACGCAPGCRAGLLVHAEAVRRGLAADLFTVNALISFYCRILDIRSGRKVFDEAGGVSRDL 181
Query: 128 FTWTAMIVGLAISGHGDTALDMFSQM 153
+W +M+ G G A +MF +M
Sbjct: 182 VSWNSMVAGYVGCGEMGLAQEMFDEM 207
>gi|345505212|gb|AEN99830.1| chlororespiratory reduction 4, partial [Brassica oleracea]
Length = 590
Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats.
Identities = 70/191 (36%), Positives = 108/191 (56%), Gaps = 22/191 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M +DV++W ++ GY G V +A+ F QMP RD V + +M+ GY++ EA
Sbjct: 259 LFNVMPRRDVVTWAIMIDGYGKLGLVHVAKTLFDQMPHRDVVAYNSMMSGYVQNRYHMEA 318
Query: 67 LTLFREMQT-SNIRRDEFTTVRILTTF----------NNDIFV-----------GIALID 104
L +F M+ S++ DE + V +L+ + +++ G+ALID
Sbjct: 319 LEVFNHMEKESHLTPDETSLVIVLSAIAQLGRLSKAIDMHLYIVEKQFPLSGKLGVALID 378
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVT 164
MY KCG ++ A RVF + K W AMI GLA+ G G++A DM Q+ R SI+ D +T
Sbjct: 379 MYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLFQIERRSIKPDHIT 438
Query: 165 YVGVLSACTHN 175
+VGVL+AC+H+
Sbjct: 439 FVGVLNACSHS 449
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 55/172 (31%), Positives = 89/172 (51%), Gaps = 22/172 (12%)
Query: 4 ALEIFGNM--KNKDVISWTTIVSGYINRGQ-VDIARQYFAQMPERDYVLWTAMIDGYLRV 60
A E+F M + +++I+W +++ GY R VD+A + F +MPE+D + W +MI GY++
Sbjct: 191 AGELFDLMPREKRNLITWNSMIGGYAQRADGVDVAEKLFDEMPEKDLISWNSMIGGYVKH 250
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
R +A LF M RRD T +ID Y K G V A+ +F
Sbjct: 251 GRIEDAKGLFNVMP----RRDVVTWA--------------IMIDGYGKLGLVHVAKTLFD 292
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS-IRLDEVTYVGVLSA 171
+M +D + +M+ G + + AL++F+ M + S + DE + V VLSA
Sbjct: 293 QMPHRDVVAYNSMMSGYVQNRYHMEALEVFNHMEKESHLTPDETSLVIVLSA 344
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 17/145 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ ++ YI G + ARQ F +MPERD V + +MIDGY++ A LF M
Sbjct: 140 DLFLQNCLIGLYIKCGFLGFARQVFDRMPERDSVSYNSMIDGYVKCGLVESAGELFDLMP 199
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGD-VEKAQRVFWKMLRKDKFTWTAM 133
R L T+N ++I Y + D V+ A+++F +M KD +W +M
Sbjct: 200 REK---------RNLITWN-------SMIGGYAQRADGVDVAEKLFDEMPEKDLISWNSM 243
Query: 134 IVGLAISGHGDTALDMFSQMLRASI 158
I G G + A +F+ M R +
Sbjct: 244 IGGYVKHGRIEDAKGLFNVMPRRDV 268
Score = 42.4 bits (98), Expect = 0.069, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 5/116 (4%)
Query: 43 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVR---ILTTFNNDIFVG 99
P + L M++ + V++F +L L + ++ E T V I T +D+F+
Sbjct: 87 PRKALFLLCLMLESSVPVDKFSLSLALKACSRLGFVK--EGTQVHGFLIKTGTWSDLFLQ 144
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155
LI +Y KCG + A++VF +M +D ++ +MI G G ++A ++F M R
Sbjct: 145 NCLIGLYIKCGFLGFARQVFDRMPERDSVSYNSMIDGYVKCGLVESAGELFDLMPR 200
>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Vitis vinifera]
Length = 615
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 65/188 (34%), Positives = 107/188 (56%), Gaps = 21/188 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F ++ D++ T +VS G V AR+ F +M +D + W AMI GY++ + REA
Sbjct: 168 VFSSICEPDLVCQTAMVSACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREA 227
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDM 105
L+LF MQ ++ +E + V +L+ ++ + +G ALIDM
Sbjct: 228 LSLFNLMQREGVKVNEVSMVSVLSACSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDM 287
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y KCG++ KA VFW M K+ +TW++ I GLA++G G+ L++FS M + S++ +E+T+
Sbjct: 288 YAKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITF 347
Query: 166 VGVLSACT 173
V VL C+
Sbjct: 348 VSVLRGCS 355
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 32/80 (40%), Positives = 46/80 (57%)
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML 154
D+ A++ K GDV A+++F KM KD W AMI G G AL +F+ M
Sbjct: 176 DLVCQTAMVSACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQ 235
Query: 155 RASIRLDEVTYVGVLSACTH 174
R ++++EV+ V VLSAC+H
Sbjct: 236 REGVKVNEVSMVSVLSACSH 255
>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 658
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 71/193 (36%), Positives = 102/193 (52%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A IF M K V+SWT ++SGY G + A F MP ++ V W AMI GY+ + F
Sbjct: 222 AQSIFYQMPEKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEF 281
Query: 64 REALTLFREMQTS-NIRRDEFTTVRILTT---------------------FNNDIFVGIA 101
+AL +F M + R D+ T + IL+ + I +G A
Sbjct: 282 DQALCVFHHMLINGECRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNA 341
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDM+ KCGDVE A+ VF M ++ TWT M+ GLA++G A+++F +M + D
Sbjct: 342 LIDMFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPD 401
Query: 162 EVTYVGVLSACTH 174
+V ++ VLSACTH
Sbjct: 402 DVIFIAVLSACTH 414
Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 61/206 (29%), Positives = 91/206 (44%), Gaps = 50/206 (24%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQV---------------------------- 32
+G A +F M +DVISW +++S Y+ RG++
Sbjct: 126 LGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNIVTWNSVVCGLSKA 185
Query: 33 ---DIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
++A F QMP R+ V W +MI GY+R+ R A ++F +M E T V
Sbjct: 186 GNMELAHSVFEQMPLRNEVSWNSMISGYVRIGDVRAAQSIFYQMP-------EKTVVS-- 236
Query: 90 TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDM 149
A+I Y GD++ A+ +F M K+ +W AMI G + D AL +
Sbjct: 237 ---------WTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCV 287
Query: 150 FSQML-RASIRLDEVTYVGVLSACTH 174
F ML R D+ T + +LSAC H
Sbjct: 288 FHHMLINGECRPDQTTLISILSACAH 313
>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Glycine max]
Length = 622
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 105/192 (54%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M DV+SWT +++GY G AR+ F +MPER+ V W+ MI GY R N F
Sbjct: 171 ARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCF 230
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
+A+ F +Q + +E V ++++ + ++ +G A+
Sbjct: 231 EKAVETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAV 290
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY +CG+VEKA VF ++ KD WTA+I GLA+ G+ + AL FS+M + +
Sbjct: 291 VDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRD 350
Query: 163 VTYVGVLSACTH 174
+T+ VL+AC+H
Sbjct: 351 ITFTAVLTACSH 362
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
F D +V +L+ MY GD+ A+ VF +M R D +WT MI G G +A ++F
Sbjct: 148 FEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFD 207
Query: 152 QM 153
+M
Sbjct: 208 RM 209
>gi|242041125|ref|XP_002467957.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
gi|241921811|gb|EER94955.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
Length = 650
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 73/193 (37%), Positives = 110/193 (56%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F + ++ D SW +++SGY+ G+V+ A+ F MP++D V W+AMI G ++ N+
Sbjct: 323 ARRLFDSSESLDHFSWNSMISGYLKNGRVEDAKALFNVMPDKDNVSWSAMIAGCVQNNQS 382
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
EALT+F M+ I+ DE T V +++ +N I +G +L
Sbjct: 383 SEALTVFDNMRAHEIKPDEVTLVSVISACTNLCALEQGKLVHEYIRQYQYNITIVLGTSL 442
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL-D 161
IDMY KCG +E A VF + K W A+IVGLA++G +LDMFS+M + I +
Sbjct: 443 IDMYMKCGCMEAALEVFDMVEEKGTPCWNAVIVGLAMNGLVTRSLDMFSEMETSGIAVPS 502
Query: 162 EVTYVGVLSACTH 174
E+T+ GVLSAC H
Sbjct: 503 EITFTGVLSACRH 515
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 68/243 (27%), Positives = 93/243 (38%), Gaps = 83/243 (34%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPER----------------------------- 45
D +SW TI++ Y+ G V+ A FA+MPER
Sbjct: 171 DAVSWNTILATYVRDGDVEQAVGVFARMPERSAAAVSSMVALFARTGMVEEARGVFDGAE 230
Query: 46 --DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTF-------NNDI 96
D WTAMI + R + F EAL +F +M+ DE V ++ N ++
Sbjct: 231 HRDAFTWTAMISCFERNDLFVEALAVFSDMREEGWPVDEAVMVSVVAACAKSEVIQNGEV 290
Query: 97 FVGI--------------ALIDMYCKCGDVEKAQRVF----------WK----------- 121
G+ ALI MY C DV A+R+F W
Sbjct: 291 CHGLVVRAGLGSRVNVQNALIHMYSSCLDVVAARRLFDSSESLDHFSWNSMISGYLKNGR 350
Query: 122 ----------MLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
M KD +W+AMI G + AL +F M I+ DEVT V V+SA
Sbjct: 351 VEDAKALFNVMPDKDNVSWSAMIAGCVQNNQSSEALTVFDNMRAHEIKPDEVTLVSVISA 410
Query: 172 CTH 174
CT+
Sbjct: 411 CTN 413
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 18/143 (12%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G V AR+ F P D V W ++ Y+R +A+ +F M E + +
Sbjct: 155 GCVAGARRVFDAGPVWDAVSWNTILATYVRDGDVEQAVGVFARMP-------ERSAAAVS 207
Query: 90 TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDM 149
+ ++ ++ + G VE+A+ VF +D FTWTAMI + AL +
Sbjct: 208 S-----------MVALFARTGMVEEARGVFDGAEHRDAFTWTAMISCFERNDLFVEALAV 256
Query: 150 FSQMLRASIRLDEVTYVGVLSAC 172
FS M +DE V V++AC
Sbjct: 257 FSDMREEGWPVDEAVMVSVVAAC 279
>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 632
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 66/195 (33%), Positives = 110/195 (56%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
MG A +F M +DV++W +++ I +G + A F++MPER+ WT+MI GY++
Sbjct: 179 MGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQC 238
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
+ +EA+ LF +M+ + ++ +E T V +L F ++ +
Sbjct: 239 GKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRIS 298
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
LIDMY KCG +E+A +VF +M + +W+AMI GLA+ G + AL +FS M + I
Sbjct: 299 NTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIE 358
Query: 160 LDEVTYVGVLSACTH 174
+ VT++G+L AC+H
Sbjct: 359 PNGVTFIGLLHACSH 373
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 42/194 (21%), Positives = 78/194 (40%), Gaps = 58/194 (29%)
Query: 35 ARQYFA----QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT 90
A+Q F Q PE +W + + + +A+ LF ++ ++ D FT +L
Sbjct: 79 AQQIFKCVEKQKPET--FVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLR 136
Query: 91 T---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT 129
F +++++ ++ +Y CG++ +A+ +F KM ++D T
Sbjct: 137 ACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVT 196
Query: 130 -------------------------------WTAMIVGLAISGHGDTALDMFSQMLRASI 158
WT+MI G G A+ +F++M A +
Sbjct: 197 WNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGV 256
Query: 159 RLDEVTYVGVLSAC 172
+ +EVT V VL+AC
Sbjct: 257 KCNEVTVVAVLAAC 270
>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
Length = 606
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 66/195 (33%), Positives = 110/195 (56%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
MG A +F M +DV++W +++ I +G + A F++MPER+ WT+MI GY++
Sbjct: 179 MGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQC 238
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
+ +EA+ LF +M+ + ++ +E T V +L F ++ +
Sbjct: 239 GKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRIS 298
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
LIDMY KCG +E+A +VF +M + +W+AMI GLA+ G + AL +FS M + I
Sbjct: 299 NTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIE 358
Query: 160 LDEVTYVGVLSACTH 174
+ VT++G+L AC+H
Sbjct: 359 PNGVTFIGLLHACSH 373
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 42/194 (21%), Positives = 78/194 (40%), Gaps = 58/194 (29%)
Query: 35 ARQYF----AQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT 90
A+Q F Q PE +W + + + +A+ LF ++ ++ D FT +L
Sbjct: 79 AQQIFECVEKQKPET--FVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLR 136
Query: 91 T---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT 129
F +++++ ++ +Y CG++ +A+ +F KM ++D T
Sbjct: 137 ACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVT 196
Query: 130 -------------------------------WTAMIVGLAISGHGDTALDMFSQMLRASI 158
WT+MI G G A+ +F++M A +
Sbjct: 197 WNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGV 256
Query: 159 RLDEVTYVGVLSAC 172
+ +EVT V VL+AC
Sbjct: 257 KCNEVTVVAVLAAC 270
>gi|225450551|ref|XP_002277430.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 500
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 105/197 (53%), Gaps = 22/197 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +F M +D+ SWTT+++ Y N V AR+ F +MPER + ++AMI Y+R
Sbjct: 139 MDSARRVFDGMGYRDIASWTTLLACYANSCSVKAARKVFDEMPERSVISYSAMIAAYVRG 198
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN----------------------DIFV 98
NRFREAL LFRE+ + I + + +L N D +
Sbjct: 199 NRFREALDLFRELFSVKIEPSDSCVMSVLCACANLGALDVGRWVYSYVCQSKGDYVDSRI 258
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
ALIDM+ KCG +E A VF K WTAM+ GLA+ G G+ ++ F +M+ + +
Sbjct: 259 ATALIDMFFKCGSIEHALLVFEGAKEKHVGEWTAMLSGLAMHGLGEQLIEAFEKMVDSGV 318
Query: 159 RLDEVTYVGVLSACTHN 175
+ + VT+V +LS C+H+
Sbjct: 319 KPNGVTFVALLSGCSHS 335
>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 705
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 104/195 (53%), Gaps = 27/195 (13%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M +DV+S T++VSGY V AR F+ M ER+ V W A+I GY + EA
Sbjct: 310 VFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEA 369
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNN---------------------------DIFVG 99
+ LF ++ +I +T +L N DIFVG
Sbjct: 370 VRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVG 429
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
+LIDMY KCG VE + VF +ML +D +W AMIVG A +G+G AL++F +ML + R
Sbjct: 430 NSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGER 489
Query: 160 LDEVTYVGVLSACTH 174
D VT +GVLSAC+H
Sbjct: 490 PDHVTMIGVLSACSH 504
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 93/191 (48%), Gaps = 21/191 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F +M+ ++ SW ++ G +D A F MPERD W AM+ G+ + +RF
Sbjct: 73 ARKVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRF 132
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
EAL +M + + +E++ L+ ++ D+++G AL
Sbjct: 133 EEALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSAL 192
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY KC V AQR F M ++ +W ++I +G AL++F +M+ I DE
Sbjct: 193 VDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDE 252
Query: 163 VTYVGVLSACT 173
+T V SAC
Sbjct: 253 ITLASVASACA 263
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 26/183 (14%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV + +V Y V A++ F M R+ V W ++I Y + +AL +F M
Sbjct: 185 DVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMM 244
Query: 75 TSNIRRDEFTTVRILTT----------------------FNNDIFVGIALIDMYCKCGDV 112
I DE T + + + ND+ +G AL+DMY KC V
Sbjct: 245 NCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRV 304
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+A+ VF +M +D + T+M+ G A + A MFS M+ ++ V++ +++
Sbjct: 305 NEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNV----VSWNALIAGY 360
Query: 173 THN 175
T N
Sbjct: 361 TQN 363
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 43/66 (65%)
Query: 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
I T F+++IF+ L+D+Y KCG +E A++VF M +++ F+W A++ L G D AL
Sbjct: 46 IKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQQRNTFSWNAVLGALTKFGALDEAL 105
Query: 148 DMFSQM 153
++F M
Sbjct: 106 NLFKCM 111
>gi|345505232|gb|AEN99840.1| chlororespiratory reduction 4, partial [Olimarabidopsis pumila]
Length = 579
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 75/195 (38%), Positives = 114/195 (58%), Gaps = 24/195 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F + +DV++W T++ GY G V A+ F QMP RD V + +M+ GY++ NRF
Sbjct: 237 AKDLFDMVPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVAYNSMMAGYVQ-NRF 295
Query: 64 R-EALTLFREMQT-SNIRRDEFTTVRILTT----------FNNDIFV-----------GI 100
EAL +F +M+ S++ DE T V +L+ + +++ G+
Sbjct: 296 HMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFLLGGKLGV 355
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
ALIDMY KCG ++ A VF + K W AMI GLAI G G++A DM Q+ R SI+
Sbjct: 356 ALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKP 415
Query: 161 DEVTYVGVLSACTHN 175
D++T+VGVL+AC+H+
Sbjct: 416 DDITFVGVLNACSHS 430
Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 61/172 (35%), Positives = 92/172 (53%), Gaps = 22/172 (12%)
Query: 4 ALEIFGNM--KNKDVISWTTIVSGYINRGQ-VDIARQYFAQMPERDYVLWTAMIDGYLRV 60
A E+F M + K++ISW +++SGY + VDIA + FA+MPE+D + W +MIDGY++
Sbjct: 172 ASELFDLMPREMKNLISWNSLISGYAQTSEGVDIASKLFAEMPEKDLISWNSMIDGYVKH 231
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
R +A LF + RRD T +ID Y K G V +A+ +F
Sbjct: 232 GRIEDAKDLFDMVP----RRDVVTWA--------------TMIDGYAKLGFVHQAKTLFD 273
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS-IRLDEVTYVGVLSA 171
+M +D + +M+ G + AL++FS M + S + DE T V VLSA
Sbjct: 274 QMPHRDVVAYNSMMAGYVQNRFHMEALEIFSDMEKESHLSPDETTLVIVLSA 325
Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 56/181 (30%), Positives = 81/181 (44%), Gaps = 33/181 (18%)
Query: 1 MGF---ALEIFGNMKN----KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAM 53
+GF L+I G +K D+ ++ Y+ G + ARQ F +MP+RD V + +M
Sbjct: 100 LGFVKGGLQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSM 159
Query: 54 IDGYLRVNRFREALTLF----REM--------------QTS---NIRRDEFTTVRILTTF 92
IDGY++ A LF REM QTS +I F +
Sbjct: 160 IDGYVKCGSIESASELFDLMPREMKNLISWNSLISGYAQTSEGVDIASKLFAEMP----- 214
Query: 93 NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
D+ ++ID Y K G +E A+ +F + R+D TW MI G A G A +F Q
Sbjct: 215 EKDLISWNSMIDGYVKHGRIEDAKDLFDMVPRRDVVTWATMIDGYAKLGFVHQAKTLFDQ 274
Query: 153 M 153
M
Sbjct: 275 M 275
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 21/131 (16%)
Query: 46 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL---------------- 89
D LW AMI + R AL LF M + D+F+ ++
Sbjct: 51 DPYLWNAMIKSHSHGTDPRRALLLFCLMLEIGVPVDKFSLSLVMKACSRLGFVKGGLQIH 110
Query: 90 -----TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGD 144
T +D+F+ LI +Y KCG + A+++F +M ++D ++ +MI G G +
Sbjct: 111 GFLKKTGLWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSIE 170
Query: 145 TALDMFSQMLR 155
+A ++F M R
Sbjct: 171 SASELFDLMPR 181
>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
Length = 648
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 69/196 (35%), Positives = 108/196 (55%), Gaps = 22/196 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A ++F M KDVISWT+IV Y G + A + F + P +D V WTAM+ GY +
Sbjct: 193 VGAARKVFDEMVEKDVISWTSIVVAYTRSGDMRSAEEVFGRCPVKDMVAWTAMVTGYAQN 252
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVG 99
+AL +F M + DE + + T F N++ VG
Sbjct: 253 AMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLGALRRAAWVQEIAERTGFGNNVVVG 312
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML-RASI 158
L+DMY KCG +++A +VF+ M K+ +T+++MI GLA G A+ +F +M+ RA++
Sbjct: 313 SGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLASHGRASEAIALFKEMVNRANV 372
Query: 159 RLDEVTYVGVLSACTH 174
+ VT++GVL+AC+H
Sbjct: 373 EPNHVTFIGVLTACSH 388
Score = 52.4 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 31/114 (27%)
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT---------------------- 129
F+ FV +LI Y CGDV A++VF +M+ KD +
Sbjct: 173 FDRHRFVENSLIGAYVACGDVGAARKVFDEMVEKDVISWTSIVVAYTRSGDMRSAEEVFG 232
Query: 130 ---------WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
WTAM+ G A + AL++F +M + +DEV+ G +SAC
Sbjct: 233 RCPVKDMVAWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQ 286
>gi|334182333|ref|NP_172105.4| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
gi|8810477|gb|AAF80138.1|AC024174_20 Contains similarity to an unknown protein T5J8.5 gi|4263522 from
Arabidopsis thaliana BAC T5J8 gb|AC004044 and contains
multiple PPR PF|01535 repeats. ESTs gb|AV565358,
gb|AV558710, gb|AV524184 come from this gene [Arabidopsis
thaliana]
gi|332189826|gb|AEE27947.1| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
Length = 1322
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 73/223 (32%), Positives = 110/223 (49%), Gaps = 52/223 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVS-------------------------------GYINRGQV 32
A ++F M +D I+WTT+VS GY+ G +
Sbjct: 923 ARKVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQMSEKNEATSNCLINGYMGLGNL 982
Query: 33 DIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT-- 90
+ A F QMP +D + WT MI GY + R+REA+ +F +M I DE T +++
Sbjct: 983 EQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISAC 1042
Query: 91 ---------------TFNN----DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWT 131
T N D+++G AL+DMY KCG +E+A VF+ + +K+ F W
Sbjct: 1043 AHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWN 1102
Query: 132 AMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
++I GLA G AL MF++M S++ + VT+V V +ACTH
Sbjct: 1103 SIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTH 1145
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 78/155 (50%), Gaps = 18/155 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
TT++ Y G++ AR+ F +MPERD + WT M+ Y RV A +L +M N
Sbjct: 908 TTLIDFYSATGRIREARKVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQMSEKN-- 965
Query: 80 RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAI 139
E T+ LI+ Y G++E+A+ +F +M KD +WT MI G +
Sbjct: 966 --EATSN--------------CLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQ 1009
Query: 140 SGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+ A+ +F +M+ I DEVT V+SAC H
Sbjct: 1010 NKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAH 1044
Score = 43.5 bits (101), Expect = 0.035, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 64/160 (40%), Gaps = 19/160 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
N+D ++ + ++D+A QM E + ++ A+ G++ + +L L+
Sbjct: 802 NQDCRLMNQFITACTSFKRLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVR 861
Query: 73 MQTSNIRRDEFTTVRILTT-------------------FNNDIFVGIALIDMYCKCGDVE 113
M ++ +T ++ F + + LID Y G +
Sbjct: 862 MLRDSVSPSSYTYSSLVKASSFASRFGESLQAHIWKFGFGFHVKIQTTLIDFYSATGRIR 921
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+A++VF +M +D WT M+ D+A + +QM
Sbjct: 922 EARKVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQM 961
>gi|345505210|gb|AEN99829.1| chlororespiratory reduction 4, partial [Barbarea verna]
Length = 588
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 111/194 (57%), Gaps = 22/194 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +DV++W T++ GY G V A+ F QMP RD V + +M+ GY++
Sbjct: 246 AKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNKYN 305
Query: 64 REALTLFREMQT-SNIRRDEFTTVRILTTF-----------------NNDIFVG----IA 101
EAL +F +M+ S++ DE T V +L+ F+G +A
Sbjct: 306 MEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVA 365
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMY KCG +++A VF ++ K W AMI GLAI G G++A DM ++ R SI+ D
Sbjct: 366 LIDMYSKCGSIQQAMLVFERIENKSIDHWNAMIGGLAIHGLGESAFDMLLEIERRSIKPD 425
Query: 162 EVTYVGVLSACTHN 175
++T+VG+L+AC+H+
Sbjct: 426 DITFVGILNACSHS 439
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 93/175 (53%), Gaps = 22/175 (12%)
Query: 1 MGFALEIFGNMKN--KDVISWTTIVSGYINRGQ-VDIARQYFAQMPERDYVLWTAMIDGY 57
+G A E+F M K++ISW +++SGY V+IA + FA+MPE+D + W ++IDGY
Sbjct: 178 IGSARELFDLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIDGY 237
Query: 58 LRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQR 117
++ R +A LF M RRD T +ID Y K G V KA+
Sbjct: 238 VKHGRMEDAKDLFYVMP----RRDVVTWA--------------TMIDGYAKLGFVHKAKT 279
Query: 118 VFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS-IRLDEVTYVGVLSA 171
+F +M +D + +M+ G + + AL++FS M + S + DE T V VLSA
Sbjct: 280 LFDQMPHRDVVAYNSMMAGYVQNKYNMEALEIFSDMEKESHLSPDETTLVIVLSA 334
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 80/182 (43%), Gaps = 30/182 (16%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF---- 70
D+ ++ Y+ G + ARQ F +MP+RD V + +MIDGY++ A LF
Sbjct: 130 DLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGLIGSARELFDLMP 189
Query: 71 REM--------------QTS---NIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVE 113
+EM QTS NI F + D+ +LID Y K G +E
Sbjct: 190 KEMKNLISWNSMISGYAQTSDGVNIASKLFAEMP-----EKDLISWNSLIDGYVKHGRME 244
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
A+ +F+ M R+D TW MI G A G A +F QM D V Y +++
Sbjct: 245 DAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHR----DVVAYNSMMAGYV 300
Query: 174 HN 175
N
Sbjct: 301 QN 302
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 21/138 (15%)
Query: 39 FAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFN----- 93
FA D LW A+I + + AL F M + + D+F+ +L +
Sbjct: 53 FAHGEVEDPFLWNAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFV 112
Query: 94 ----------------NDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGL 137
+D+F+ LI +Y KCG + A+++F +M ++D ++ +MI G
Sbjct: 113 QEGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGY 172
Query: 138 AISGHGDTALDMFSQMLR 155
G +A ++F M +
Sbjct: 173 VKCGLIGSARELFDLMPK 190
>gi|242054761|ref|XP_002456526.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
gi|241928501|gb|EES01646.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
Length = 552
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 73/178 (41%), Positives = 100/178 (56%), Gaps = 22/178 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQM-PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 78
T +++ Y QV +AR F M P++ V W+AMI+GY RV EAL LFREMQ +
Sbjct: 165 TGLLNLYAKCEQVALARTVFDGMAPDKSLVAWSAMINGYSRVGMVTEALGLFREMQAVGV 224
Query: 79 RRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQR 117
DE T V +++ D+ + ALIDMY KCG +E+A+
Sbjct: 225 EPDEVTMVGVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARG 284
Query: 118 VFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
VF M+ KD W+AMIVG AI G + AL +FS+ML +R + VT++GVLSAC H+
Sbjct: 285 VFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHS 342
>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
Length = 793
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 68/181 (37%), Positives = 100/181 (55%), Gaps = 21/181 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D ISW +++SGY+ G+++ AR F MP++D V W+AMI GY + +RF E L LF+EMQ
Sbjct: 354 DQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQ 413
Query: 75 TSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVE 113
+ DE V +++ + +I +G LI+MY K G VE
Sbjct: 414 IEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVE 473
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
A VF + K TW A+I+GLA++G D +L FS+M + +E+T+V VL AC
Sbjct: 474 DALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACR 533
Query: 174 H 174
H
Sbjct: 534 H 534
Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 62/223 (27%), Positives = 99/223 (44%), Gaps = 52/223 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +++ M ++VI+ +++ + +G V+ A + F +M ++D V W+A+I Y + +
Sbjct: 211 AKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMY 270
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIF-------------VGI--------AL 102
EAL LF+EM + I DE + +L+ + + VGI AL
Sbjct: 271 EEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNAL 330
Query: 103 IDM-------------------------------YCKCGDVEKAQRVFWKMLRKDKFTWT 131
I M Y KCG++EKA+ +F M KD +W+
Sbjct: 331 IHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWS 390
Query: 132 AMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
AMI G A L +F +M + DE V V+SACTH
Sbjct: 391 AMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTH 433
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 18/161 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ DV T+++ Y G + AR+ F D V W +M+ GY+ V EA ++
Sbjct: 158 DSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDR 217
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA 132
M N + ++I ++ K G+VE+A ++F +M +KD +W+A
Sbjct: 218 MPERN------------------VIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSA 259
Query: 133 MIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+I + + AL +F +M I +DEV + VLSAC+
Sbjct: 260 LISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACS 300
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 35/149 (23%), Positives = 73/149 (48%), Gaps = 24/149 (16%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFT- 84
+IN Q + Q F+ + + + M+ GY++ N +A+ +++ M SN+ D +T
Sbjct: 73 FININQ---SYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTY 129
Query: 85 -------TVRIL-------------TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124
++R+ F++D+++ LI+MY CG++ A++VF
Sbjct: 130 PILFQSCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSV 189
Query: 125 KDKFTWTAMIVGLAISGHGDTALDMFSQM 153
D +W +M+ G + G+ + A D++ +M
Sbjct: 190 LDMVSWNSMLAGYVLVGNVEEAKDVYDRM 218
>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 780
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 71/193 (36%), Positives = 101/193 (52%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M KD++SWTT++ G+ G D A F MP + W A+I Y + +
Sbjct: 328 AKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKP 387
Query: 64 REALTLFREMQTS-NIRRDEFTTVRILTT---------------------FNNDIFVGIA 101
R AL+LF EMQ S + + DE T + L N + + +
Sbjct: 388 RVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATS 447
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+DMY KCG++ KA VF + RKD + W+AMI LA+ G G ALD+FS ML A I+ +
Sbjct: 448 LLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPN 507
Query: 162 EVTYVGVLSACTH 174
VT+ +L AC H
Sbjct: 508 AVTFTNILCACNH 520
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 21/162 (12%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ D+ ++++ Y + G D+A + F MP +D V W AMI+ + +AL LF+E
Sbjct: 205 SSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQE 264
Query: 73 MQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGD 111
M+ +++ + T V +L+ F + + A++DMY KCG
Sbjct: 265 MEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGC 324
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+ A+ +F KM KD +WT M+ G A G+ D A +F M
Sbjct: 325 INDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAM 366
Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 22/160 (13%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-QTSNIRRDEFT--------- 84
A+ F Q+P+ + W +I GY + ++ +F M + + ++FT
Sbjct: 125 AKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAAS 184
Query: 85 ------------TVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA 132
+ I + ++D+F+ +LI+ Y G + A RVF M KD +W A
Sbjct: 185 RLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNA 244
Query: 133 MIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
MI A+ G D AL +F +M ++ + +T V VLSAC
Sbjct: 245 MINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSAC 284
>gi|125528817|gb|EAY76931.1| hypothetical protein OsI_04889 [Oryza sativa Indica Group]
Length = 565
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 69/193 (35%), Positives = 107/193 (55%), Gaps = 23/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M +D SW+ ++ GY G + AR+ F +MP ++ V WTAMI+GY +
Sbjct: 198 ARRVFDQMPTRDSTSWSVLIVGYCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQSGVP 257
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFN----------------------NDIFVGIA 101
+E+L LFREM+ + I D T V +++ + ND V A
Sbjct: 258 KESLALFREMEAAGIEPDAATMVGVISAASQIGSTELAGWVGSYVDKKRIERNDK-VLTA 316
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+DM+ KCG+V++A F ++ + D + +TA+I GLA GH AL +F +M S+ D
Sbjct: 317 LVDMHAKCGNVDEALSAFREIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVWPD 376
Query: 162 EVTYVGVLSACTH 174
+T+VGVL+AC+H
Sbjct: 377 PITFVGVLTACSH 389
Score = 82.4 bits (202), Expect = 7e-14, Method: Composition-based stats.
Identities = 54/160 (33%), Positives = 76/160 (47%), Gaps = 18/160 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D +S+ +++ + V A FA MP R V W AM+ Y+ A +F +M
Sbjct: 147 DAVSFNSLLCAHARLASVPDAESLFAAMPSRTQVSWNAMVVVYVNAGDVSSARRVFDQMP 206
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
T RD T+++ LI YCKCG + A+ VF +M K+ WTAMI
Sbjct: 207 T----RDS-------TSWS-------VLIVGYCKCGSMRSAREVFDRMPAKNLVAWTAMI 248
Query: 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
G A SG +L +F +M A I D T VGV+SA +
Sbjct: 249 NGYAQSGVPKESLALFREMEAAGIEPDAATMVGVISAASQ 288
>gi|115441777|ref|NP_001045168.1| Os01g0912900 [Oryza sativa Japonica Group]
gi|20161377|dbj|BAB90301.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113534699|dbj|BAF07082.1| Os01g0912900 [Oryza sativa Japonica Group]
gi|125573076|gb|EAZ14591.1| hypothetical protein OsJ_04514 [Oryza sativa Japonica Group]
Length = 533
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 69/193 (35%), Positives = 107/193 (55%), Gaps = 23/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M +D SW+ ++ GY G + AR+ F +MP ++ V WTAMI+GY +
Sbjct: 198 ARRVFDQMPTRDSTSWSVLIVGYCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQSGVP 257
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFN----------------------NDIFVGIA 101
+E+L LFREM+ + I D T V +++ + ND V A
Sbjct: 258 KESLALFREMEAAGIEPDAATMVGVISAASQIGSTELAGWVGSYVDKKRIERNDK-VLTA 316
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+DM+ KCG+V++A F ++ + D + +TA+I GLA GH AL +F +M S+ D
Sbjct: 317 LVDMHAKCGNVDEALSAFREIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVWPD 376
Query: 162 EVTYVGVLSACTH 174
+T+VGVL+AC+H
Sbjct: 377 PITFVGVLTACSH 389
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 53/160 (33%), Positives = 75/160 (46%), Gaps = 18/160 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D +S+ +++ + V A F MP R V W AM+ Y+ A +F +M
Sbjct: 147 DAVSFNSLLCAHARLASVPDAESLFVAMPSRTQVSWNAMVVVYVNAGDVSSARRVFDQMP 206
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
T RD T+++ LI YCKCG + A+ VF +M K+ WTAMI
Sbjct: 207 T----RDS-------TSWS-------VLIVGYCKCGSMRSAREVFDRMPAKNLVAWTAMI 248
Query: 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
G A SG +L +F +M A I D T VGV+SA +
Sbjct: 249 NGYAQSGVPKESLALFREMEAAGIEPDAATMVGVISAASQ 288
>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Vitis vinifera]
Length = 518
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 106/190 (55%), Gaps = 21/190 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M ++ +SW T++ G + G+V A F QM ERD + WT+MI G+++ F +A
Sbjct: 149 MFDEMHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQA 208
Query: 67 LTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDM 105
L FREMQ + + D T + +L F ++I + +LIDM
Sbjct: 209 LEWFREMQLAGVEPDYVTIISVLAACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDM 268
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y +CG + A++VF +M ++ +W +MIVG A++GH + AL+ F+ M + R D V++
Sbjct: 269 YSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFALNGHAEEALEFFNLMRKEGFRPDGVSF 328
Query: 166 VGVLSACTHN 175
G L+AC+H+
Sbjct: 329 TGALTACSHS 338
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 74/187 (39%), Gaps = 55/187 (29%)
Query: 43 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN-------- 94
P V WT+ I + R + EA F MQ + +R + T + +L+ +
Sbjct: 50 PIDPIVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGLRF 109
Query: 95 ----------------DIFVGIALIDMYCKC----------------------------- 109
++ VG AL+DMY KC
Sbjct: 110 GGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCM 169
Query: 110 --GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVG 167
G+V +A +F +M +D +WT+MI G G + AL+ F +M A + D VT +
Sbjct: 170 RNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIIS 229
Query: 168 VLSACTH 174
VL+AC +
Sbjct: 230 VLAACAN 236
>gi|242079801|ref|XP_002444669.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
gi|241941019|gb|EES14164.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
Length = 581
Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 63/177 (35%), Positives = 106/177 (59%), Gaps = 22/177 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
++++S Y G V+ AR+ F M ER+ V WT+MI GY ++ +F+EA+ LFR+MQ + ++
Sbjct: 235 SSLISMYAKCGLVEDARKVFHGMHERNVVCWTSMISGYTQLGKFKEAVNLFRDMQITGMK 294
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
D+ T ++++ ++ V +LIDMY KCGD+ KA +
Sbjct: 295 VDDGTIATVVSSCAQMGALDLGRYVHAYCDVHGLGKELSVKNSLIDMYSKCGDINKAHEI 354
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML-RASIRLDEVTYVGVLSACTH 174
F + ++D F+WTAMI+G ++G ALD+F+QM + +EVT++GVL++C+H
Sbjct: 355 FCGLTKRDVFSWTAMIMGFTVNGLCSEALDLFAQMEGEGKVMPNEVTFLGVLTSCSH 411
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 28/169 (16%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPER-----DYVLWTAMID----GYLRVNRFRE 65
D +SW TI+SGY+ G + A Q F QM + D L A++ G ++V R
Sbjct: 160 DTVSWNTIISGYLRGGMPNKALQAFGQMVKEQVTLDDVTLLNALVASAKAGKVKVGRLCH 219
Query: 66 ALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK 125
+L ++ + ++G +LI MY KCG VE A++VF M +
Sbjct: 220 SLV-------------------VVNGAGINCYMGSSLISMYAKCGLVEDARKVFHGMHER 260
Query: 126 DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+ WT+MI G G A+++F M +++D+ T V+S+C
Sbjct: 261 NVVCWTSMISGYTQLGKFKEAVNLFRDMQITGMKVDDGTIATVVSSCAQ 309
Score = 43.9 bits (102), Expect = 0.026, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 94 NDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK--DKFTWTAMIVGLAISGHGDTALDMFS 151
+D FV +LI+MY C A++V + D +W +I G G + AL F
Sbjct: 126 SDTFVLNSLINMYSSCSYPATARQVLDSAPQGACDTVSWNTIISGYLRGGMPNKALQAFG 185
Query: 152 QMLRASIRLDEVTYVGVLSA 171
QM++ + LD+VT + L A
Sbjct: 186 QMVKEQVTLDDVTLLNALVA 205
>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
Length = 563
Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 67/176 (38%), Positives = 103/176 (58%), Gaps = 21/176 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+++V+ Y ++ IAR+ F ++ ER+ V W+AM+ GY R+ EAL +FREMQ I
Sbjct: 131 SSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYARLGMINEALIMFREMQVVGIE 190
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
DE + V +L+ + D+ + ALI+MY KCG +EKA+ +
Sbjct: 191 PDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTALINMYAKCGCIEKAREI 250
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
F +M KD W++MIVGLAI G + AL++FS+M A + + VT++G+LSAC H
Sbjct: 251 FDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTFIGILSACAH 306
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 48/167 (28%), Positives = 82/167 (49%), Gaps = 25/167 (14%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDG--YLRVNRFREALTLFREMQTSNIRR-DEFTTV 86
G D AR+ F+Q+P + ++I G Y ++ +E + LF++M + FT
Sbjct: 38 GNFDYARKIFSQIPNPGIFAYNSVIRGCLYTKIPS-KEPIHLFKDMVGKGYPNPNTFTMA 96
Query: 87 RIL---------------------TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK 125
+L + F++ +V +L++ Y KC ++ A++VF ++ +
Sbjct: 97 FVLKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITER 156
Query: 126 DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+ W+AM+ G A G + AL MF +M I DEV+ VGVLSAC
Sbjct: 157 NLVCWSAMVSGYARLGMINEALIMFREMQVVGIEPDEVSLVGVLSAC 203
>gi|255564603|ref|XP_002523296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537384|gb|EEF39012.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 353
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 114/198 (57%), Gaps = 24/198 (12%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ FA +F + +D+ +W +++GY G ++ A + F MP+R+ V WTAMI GY +
Sbjct: 133 VAFAHRVFDEIPVRDIPTWNALIAGYSRCGDMEGALKIFKLMPDRNVVSWTAMISGYSQN 192
Query: 61 NRFREALTLFREMQTSN-IRRDEFTTVRILTTFNN---------------------DIFV 98
R+ +AL LF +M+ N +R +E T IL N +++V
Sbjct: 193 GRYAKALELFLKMEKENGLRPNEVTIASILPACANLGALEVGDRIETYARENGLLRNLYV 252
Query: 99 GIALIDMYCKCGDVEKAQRVFWKML--RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156
AL++MY +CG ++ A++VF K++ R++ +W +MI+GLAI G AL ++++ML
Sbjct: 253 SNALLEMYARCGKIDMARKVFDKIIGKRRNLCSWNSMIMGLAIHGRSHDALHLYNRMLIE 312
Query: 157 SIRLDEVTYVGVLSACTH 174
I D+VT+VG+L ACTH
Sbjct: 313 GIAPDDVTFVGILLACTH 330
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 86/207 (41%), Gaps = 53/207 (25%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
T+ I V A + +P + L+ +I Y N+ + +++ +M++ N
Sbjct: 21 TLTERLIQIPNVPYAHKLIDLIPSPNVFLYNKLIQAYSFQNQLHQCFSIYSQMRSRNCTG 80
Query: 81 DEFT---------------TVRILTT------FNNDIFVGIALIDMYCK----------- 108
++ T ++L T F +D+ AL+DMYCK
Sbjct: 81 NQHTFTFLFAACASFFSPLHAQMLHTHFKKSGFESDVIALTALVDMYCKLGMVAFAHRVF 140
Query: 109 --------------------CGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALD 148
CGD+E A ++F M ++ +WTAMI G + +G AL+
Sbjct: 141 DEIPVRDIPTWNALIAGYSRCGDMEGALKIFKLMPDRNVVSWTAMISGYSQNGRYAKALE 200
Query: 149 MFSQMLRAS-IRLDEVTYVGVLSACTH 174
+F +M + + +R +EVT +L AC +
Sbjct: 201 LFLKMEKENGLRPNEVTIASILPACAN 227
>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
Length = 710
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 101/195 (51%), Gaps = 27/195 (13%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M ++ +S TT+VSGY V AR FA + ++D V W A+I GY + EA
Sbjct: 315 VFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEA 374
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNN---------------------------DIFVG 99
L LFR ++ ++ +T +L N DIFVG
Sbjct: 375 LGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVG 434
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
+LIDMY KCG VE+ RVF M+ KD +W MI+G A +G+G AL++F +ML + +
Sbjct: 435 NSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEK 494
Query: 160 LDEVTYVGVLSACTH 174
D VT +G L AC+H
Sbjct: 495 PDHVTMIGTLCACSH 509
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 95/194 (48%), Gaps = 21/194 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ +A ++F M ++V S+ +I+S + G VD + F+ MPE+D W +MI G+ +
Sbjct: 75 LDYARKVFDRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQH 134
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
+RF EAL F M + ++++ L+ ++ D+F+G
Sbjct: 135 DRFEEALDWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMG 194
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
LID Y KCG V A+RVF M K+ +W +I +G AL+ F +M +
Sbjct: 195 SGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFK 254
Query: 160 LDEVTYVGVLSACT 173
DEVT V+SAC
Sbjct: 255 PDEVTLASVVSACA 268
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 21/179 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE----RDYVLWTAMIDG 56
+G A +F M+ K+V+SW +++ Y G A + F +M E D V +++
Sbjct: 207 VGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSA 266
Query: 57 YLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQ 116
+ F+E + + + S+ F ND+ +G AL+DMY KCG V +A+
Sbjct: 267 CATLAAFKEGVQIHARVVKSD-------------KFRNDLILGNALVDMYAKCGRVNEAR 313
Query: 117 RVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
VF +M ++ + T M+ G A S A MF+ + + I V++ +++ T N
Sbjct: 314 CVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDI----VSWNALIAGYTQN 368
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 31/117 (26%)
Query: 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF--------------------WK------ 121
I T F ++F+ LID+Y KCG ++ A++VF W
Sbjct: 51 IQTPFCEEVFIQNRLIDVYGKCGYLDYARKVFDRMSERNVFSFNSIISTLMRWGFVDESA 110
Query: 122 -----MLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
M KD+ +W +MI G A + ALD F +M R L++ ++ LSAC+
Sbjct: 111 WLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSGLSACS 167
>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
Length = 534
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 107/192 (55%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +DVISW +++SGY GQ+ A+ F M ++ V WTAMI GY + +
Sbjct: 163 AHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCY 222
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
EA+ FREMQ + I DE + + +L + F V AL
Sbjct: 223 VEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNAL 282
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I+MY KCG + +A ++F +M KD +W+ MI G A G+ A++ F++M RA ++ +
Sbjct: 283 IEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNG 342
Query: 163 VTYVGVLSACTH 174
+T++G+LSAC+H
Sbjct: 343 ITFLGLLSACSH 354
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 31/105 (29%)
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLA---------------------- 138
ALIDMY K D+ A +VF +M +D +W +++ G A
Sbjct: 149 ALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVS 208
Query: 139 ----ISGHGD-----TALDMFSQMLRASIRLDEVTYVGVLSACTH 174
ISG+ A+D F +M A I DE++ + VL +C
Sbjct: 209 WTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQ 253
>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 675
Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 71/194 (36%), Positives = 107/194 (55%), Gaps = 23/194 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A EIF NM+ +DV SWT++++GY G + AR+ F +MPER+ V W AMI GY + ++
Sbjct: 307 AREIFNNMERRDVFSWTSLLNGYAKNGDLGSARKLFDEMPERNIVSWNAMIAGYSQNSQP 366
Query: 64 REALTLFREM-QTSNIRRDEFTTVRILTTFN----------------NDIFVGIALI--- 103
EAL LF M + E T V +L+ N I + ++LI
Sbjct: 367 MEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLEMGQEIHCNHVNKIGIQVSLILKN 426
Query: 104 ---DMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
DMY KCG ++ A ++F M K+ +W +MI A GH AL +F QM+ + ++
Sbjct: 427 AVMDMYAKCGSIDAAAKLFHSMPEKNLVSWNSMISAYASYGHAKKALTLFDQMIGSGLKP 486
Query: 161 DEVTYVGVLSACTH 174
D +T++GVLSAC++
Sbjct: 487 DHITFIGVLSACSY 500
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 50/167 (29%), Positives = 85/167 (50%), Gaps = 21/167 (12%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ D+ ++ Y+ G + ARQ F + +D V WT MI+GY R N EA+ LF
Sbjct: 184 DSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYARNNWLDEAIALFNS 243
Query: 73 MQTSNIRRDEFTTVRILTTFNN-----------------DIFVGI----ALIDMYCKCGD 111
M +S+++ +E T + +L+ + DI + A++DMY KCG
Sbjct: 244 MLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRKDITCSLNLLNAMLDMYVKCGC 303
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
+ A+ +F M R+D F+WT+++ G A +G +A +F +M +I
Sbjct: 304 LTTAREIFNNMERRDVFSWTSLLNGYAKNGDLGSARKLFDEMPERNI 350
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 21/168 (12%)
Query: 28 NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVR 87
+ G + A F Q + W MI GY + N + FR+M + D + V
Sbjct: 98 DSGDIHYAHLIFDQTELPNCFFWNTMIKGYCKANHPSMGFSFFRQMIRNRAEFDSGSFVF 157
Query: 88 ILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKD 126
L F++D+FV LI Y + G + A+++F + KD
Sbjct: 158 ALKACGQFAEKIVGMAVHSVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDESSVKD 217
Query: 127 KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
TWT MI G A + D A+ +F+ ML + ++ +EVT + +LSAC+
Sbjct: 218 VVTWTTMINGYARNNWLDEAIALFNSMLSSDVKPNEVTMIALLSACSQ 265
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 6 EIFGNMKNK-----DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
EI N NK +I ++ Y G +D A + F MPE++ V W +MI Y
Sbjct: 407 EIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPEKNLVSWNSMISAYASY 466
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFV 98
++ALTLF +M S ++ D T + +L+ + FV
Sbjct: 467 GHAKKALTLFDQMIGSGLKPDHITFIGVLSACSYGGFV 504
>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
Length = 585
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 105/188 (55%), Gaps = 21/188 (11%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 67
F +M +D++SW +++ GY G++++AR+ F +M +++ + W+ MIDGY +EAL
Sbjct: 231 FDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFBKMLQKNVISWSIMIDGYAXHRDSKEAL 290
Query: 68 TLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMY 106
LFR+M I+ D + V ++ + DI V AL+DMY
Sbjct: 291 NLFRQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMY 350
Query: 107 CKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYV 166
KCG ++A+ +F M ++ +W MIVGL ++G G AL+ F QM I +D++ ++
Sbjct: 351 LKCGSXDEARXIFNSMPERNVVSWNVMIVGLGMNGFGKEALECFXQMEMERIPMDDLLFL 410
Query: 167 GVLSACTH 174
GVL AC+H
Sbjct: 411 GVLMACSH 418
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 98/177 (55%), Gaps = 25/177 (14%)
Query: 2 GFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR-- 59
G+A +F KD++SW +++ GY+ G+++ A+ F +MPERD V W+ MIDGY +
Sbjct: 162 GWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMPERDVVSWSIMIDGYGKKM 221
Query: 60 --VNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQR 117
VNR R F M T R L ++N ++ID Y K G++E A+
Sbjct: 222 GEVNRAR---VFFDSMPT-----------RDLVSWN-------SMIDGYAKVGEMEVARE 260
Query: 118 VFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+F KML+K+ +W+ MI G A AL++F QML I+ D V+ VG +SAC+
Sbjct: 261 IFBKMLQKNVISWSIMIDGYAXHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQ 317
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 24/154 (15%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
++VS +N V+ A FAQ+ + + + M+ Y + AL + EM+ +
Sbjct: 52 SVVSKTLN---VNYAELVFAQIHQPNSFICNTMVKCYTESSTPERALRFYAEMRKKGLLG 108
Query: 81 DEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVF 119
D +T +L F D+FV LI MYC+CG+ A+ VF
Sbjct: 109 DNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVF 168
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
KD +W +M+ G G + A +MF +M
Sbjct: 169 DGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEM 202
>gi|297724409|ref|NP_001174568.1| Os06g0114366 [Oryza sativa Japonica Group]
gi|218197444|gb|EEC79871.1| hypothetical protein OsI_21372 [Oryza sativa Indica Group]
gi|255676656|dbj|BAH93296.1| Os06g0114366 [Oryza sativa Japonica Group]
Length = 509
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 101/182 (55%), Gaps = 22/182 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVNRFREALTLFREM 73
DV++W +V Y G A ++F +MP +++ V W M+ + R EAL LF+EM
Sbjct: 187 DVVAWNALVDMYAKCGDAAAAHRWFRRMPVKKNVVSWNTMMSAFARAGELEEALALFQEM 246
Query: 74 QTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDV 112
Q + +R D+ T V L + D VG AL+DMY KCG V
Sbjct: 247 QAAAVRPDDATFVAALGACAQLGALDTGRWLHAYMGRMGHSADGVVGNALLDMYAKCGAV 306
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
++A VF M R+D +T+T+MI+GLA+ G G+ AL +F+ M RA + +EVT +GVL+AC
Sbjct: 307 DQATEVFDGMARRDVYTYTSMILGLAMHGRGEDALSLFAGMQRAGVTPNEVTLLGVLTAC 366
Query: 173 TH 174
H
Sbjct: 367 CH 368
>gi|357142551|ref|XP_003572610.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Brachypodium distachyon]
Length = 454
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 103/198 (52%), Gaps = 24/198 (12%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ A +F + DV SW T+VSGY G + AR+ F +MP R+ V W+AMID +
Sbjct: 127 LPHARRVFDSGAALDVASWNTMVSGYGKSGDLAAAREVFGRMPGRNLVSWSAMIDALVHA 186
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN------------------------DI 96
F EAL++F +M + D V +L + ++
Sbjct: 187 EEFGEALSVFDQMMREGFKPDVVVLVSMLKACAHLGAVKRGRWAHQYLETEGFAGRQRNV 246
Query: 97 FVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156
V AL+DMYCKCG +E+A VF + +D W +MI GLA++GHGD AL++F +ML+
Sbjct: 247 MVETALVDMYCKCGCMEEAWCVFDGVRYRDVVLWNSMIGGLAMNGHGDRALELFQRMLQE 306
Query: 157 SIRLDEVTYVGVLSACTH 174
++ T+ G L ACTH
Sbjct: 307 GFVPNQSTFAGALCACTH 324
>gi|357477477|ref|XP_003609024.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510079|gb|AES91221.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 544
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 101/188 (53%), Gaps = 24/188 (12%)
Query: 11 MKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 70
M K VISW T+++ YI G V AR+ F MPER+ V W +MI G + V + AL LF
Sbjct: 218 MPCKTVISWNTLIARYIRLGDVQAARRVFGCMPERNAVSWNSMIAGCVSVRDYAGALELF 277
Query: 71 REMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKC 109
EMQ + ++ E T + IL + ++G AL++MYCKC
Sbjct: 278 SEMQNAGVKPTEVTLISILGACAETGALEIGHKIYESLKVCEHKIESYLGNALVNMYCKC 337
Query: 110 GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM---LRASIRLDEVTYV 166
G++ A +F M K W AM++GLA+ G+ + +F++M L SIR D VT++
Sbjct: 338 GNLSLAWEIFNGMKMKTVSCWNAMVIGLAVHGYCEEVFQLFTEMEESLGGSIRPDRVTFI 397
Query: 167 GVLSACTH 174
GVL AC+H
Sbjct: 398 GVLVACSH 405
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 18/148 (12%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT 85
Y G V +AR F Q+ + V W MI Y RV+ + A L E
Sbjct: 171 YSQCGLVSVARYLFDQIKDTSLVSWNIMISAYDRVDDYELADHLL-----------ELMP 219
Query: 86 VRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDT 145
+ + ++N LI Y + GDV+ A+RVF M ++ +W +MI G
Sbjct: 220 CKTVISWN-------TLIARYIRLGDVQAARRVFGCMPERNAVSWNSMIAGCVSVRDYAG 272
Query: 146 ALDMFSQMLRASIRLDEVTYVGVLSACT 173
AL++FS+M A ++ EVT + +L AC
Sbjct: 273 ALELFSEMQNAGVKPTEVTLISILGACA 300
>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
cordifolium]
Length = 679
Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 65/192 (33%), Positives = 108/192 (56%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F ++DV+S+T +++GY +RG +D A++ F ++P +D V W AMI GY + R+
Sbjct: 132 AHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRY 191
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
+EAL LF EM +++ DE T +L+T F +++ + AL
Sbjct: 192 KEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNAL 251
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
ID+Y KCG++E+A +F + KD +W +I G A H AL +F +ML+ ++
Sbjct: 252 IDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPND 311
Query: 163 VTYVGVLSACTH 174
VT + +L AC H
Sbjct: 312 VTMLSILPACAH 323
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 56/176 (31%), Positives = 89/176 (50%), Gaps = 23/176 (13%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
++ Y G+++ A F + +D + W +I GY +N +EAL +F+EM +
Sbjct: 251 LIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPN 310
Query: 82 EFTTVRILTT---------------FNNDIFVGI--------ALIDMYCKCGDVEKAQRV 118
+ T + IL + + GI +LIDMY KCG++E A +V
Sbjct: 311 DVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQV 370
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
F +L K + AMI G A+ G D A D+ S+M + I D++T+VG+LSAC+H
Sbjct: 371 FDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSH 426
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 53/86 (61%)
Query: 90 TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDM 149
T+ + D+ A+I Y G+++KAQ++F ++ KD +W AMI G A G AL++
Sbjct: 138 TSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALEL 197
Query: 150 FSQMLRASIRLDEVTYVGVLSACTHN 175
F++M++ ++ DE T VLS CTH+
Sbjct: 198 FNEMMKMDVKPDESTMATVLSTCTHS 223
>gi|255550516|ref|XP_002516308.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544538|gb|EEF46055.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 599
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 108/192 (56%), Gaps = 24/192 (12%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
IF M +DV+SWT++V Y ++D A + F +MP ++ V WT++I G+ + +A
Sbjct: 156 IFSRMFERDVVSWTSMVDAYARASRMDDAFRLFMEMPVKNTVSWTSLIAGFAKNGHSYKA 215
Query: 67 LTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIF---VGIAL 102
L LF +MQ N+ FT V +L ++ D+F V AL
Sbjct: 216 LELFLQMQEENVLPSAFTFVTVLGACADLALIERGKQIHGHIIRSSGRTDLFNMYVYNAL 275
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMYCKCGD++ ++ +F M KD +W ++I GLA +GH + +LD+F +M+ + +
Sbjct: 276 IDMYCKCGDMKSSKSLFEGMSEKDIVSWNSLITGLAQNGHAEESLDLFRKMVEGNRLPNH 335
Query: 163 VTYVGVLSACTH 174
VT+ GVLSAC+H
Sbjct: 336 VTFSGVLSACSH 347
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 88/181 (48%), Gaps = 12/181 (6%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F + K++ SW T++ GY G D AR F +MPE + + + ++I G L + R
Sbjct: 61 AQKVFDDNPIKNIHSWNTMIGGYARVGLFDNARDLFDKMPEPNLISYNSLISGSLDLLRQ 120
Query: 64 REALTLFREMQTS----NIRRDEFTTVRILTT--------FNNDIFVGIALIDMYCKCGD 111
+ ++ + N D + T F D+ +++D Y +
Sbjct: 121 VHGAAILIGLEFNVIVYNALIDSYGKCGQHNTSYCIFSRMFERDVVSWTSMVDAYARASR 180
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
++ A R+F +M K+ +WT++I G A +GH AL++F QM ++ T+V VL A
Sbjct: 181 MDDAFRLFMEMPVKNTVSWTSLIAGFAKNGHSYKALELFLQMQEENVLPSAFTFVTVLGA 240
Query: 172 C 172
C
Sbjct: 241 C 241
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 97 FVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156
F ++D+Y K ++ AQ+VF K+ +W MI G A G D A D+F +M
Sbjct: 43 FFSNRVMDLYSKFNVIDSAQKVFDDNPIKNIHSWNTMIGGYARVGLFDNARDLFDKMPEP 102
Query: 157 SIRLDEVTYVGVLSA 171
++ ++Y ++S
Sbjct: 103 NL----ISYNSLISG 113
>gi|347954488|gb|AEP33744.1| chloroplast biogenesis 19, partial [Aethionema grandiflorum]
Length = 413
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 106/194 (54%), Gaps = 21/194 (10%)
Query: 2 GFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVN 61
G A +F M++K+ ++W T++ Y+ G+VD A + F +MP+ D + WTAMI+G+++
Sbjct: 72 GKARCVFDYMEDKNSVTWNTMIDAYMRSGKVDRAVKLFDEMPDPDLISWTAMINGFVKKG 131
Query: 62 RFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGI 100
EAL FREMQ S ++ D + L F N++ V
Sbjct: 132 FHEEALVWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWVHRYVLSQDFKNNVRVNN 191
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
+LID+YC+CG VE A+ VF KM ++ +W ++IVG A +G+ +L F +M
Sbjct: 192 SLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGSAANGNAHESLVYFRKMQEEGFNP 251
Query: 161 DEVTYVGVLSACTH 174
D VT+ G L+AC+H
Sbjct: 252 DAVTFTGALTACSH 265
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 31/110 (28%)
Query: 96 IFVGIALIDMYCK-------------------------------CGDVEKAQRVFWKMLR 124
+ VG A++ MY K G V++A ++F +M
Sbjct: 55 VMVGTAILGMYSKRCRFGKARCVFDYMEDKNSVTWNTMIDAYMRSGKVDRAVKLFDEMPD 114
Query: 125 KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
D +WTAMI G G + AL F +M + ++ D V + L+ACT+
Sbjct: 115 PDLISWTAMINGFVKKGFHEEALVWFREMQISGVKPDYVAIIAALAACTN 164
>gi|345505234|gb|AEN99841.1| chlororespiratory reduction 4, partial [Raphanus sativus]
Length = 577
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 75/225 (33%), Positives = 112/225 (49%), Gaps = 53/225 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M KD+ISW +++ GY+ G+++ A+ F MP RD V W MIDGY ++
Sbjct: 212 ASKLFDEMPEKDLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLV 271
Query: 64 REALTLFREM--------------------------------QTSNIRRDEFTTV----- 86
+A TLF +M + S++ DE T V
Sbjct: 272 HQAKTLFDQMPHRDVVAYNSMMSGFVQNRYHIEALEVFNHMEKESHLSPDETTLVIVLSA 331
Query: 87 -----RILTTFNNDIFV-----------GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTW 130
R+ + +++ G+ALIDMY KCG ++ A RVF + K W
Sbjct: 332 IAQLGRLTKAIDMHLYIVEKRFLLSGKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDHW 391
Query: 131 TAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
AMI GLA+ G G++A DM Q+ R SI+ D +T+VGVL+AC+H+
Sbjct: 392 NAMIGGLAVHGLGESAFDMLLQIERRSIKPDHITFVGVLNACSHS 436
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 57/206 (27%), Positives = 92/206 (44%), Gaps = 53/206 (25%)
Query: 1 MGFALEIFGNMKNKD---------------------------------VISWTTIVSGYI 27
+GFA ++F M +D +I+W +++ GY
Sbjct: 144 LGFARQVFDRMPQRDSVSYNSMIDGYVKCGLVESAGELFDLMPREKRNLITWNSMIGGYA 203
Query: 28 NRGQ-VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTV 86
R V++A + F +MPE+D + W +MI GY++ R +A LF M RRD T
Sbjct: 204 QRADGVNVASKLFDEMPEKDLISWNSMIGGYVKHGRIEDAKGLFDVMP----RRDVVTWA 259
Query: 87 RILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTA 146
+ID Y K G V +A+ +F +M +D + +M+ G + + A
Sbjct: 260 --------------IMIDGYGKLGLVHQAKTLFDQMPHRDVVAYNSMMSGFVQNRYHIEA 305
Query: 147 LDMFSQMLRAS-IRLDEVTYVGVLSA 171
L++F+ M + S + DE T V VLSA
Sbjct: 306 LEVFNHMEKESHLSPDETTLVIVLSA 331
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 49/179 (27%), Positives = 75/179 (41%), Gaps = 24/179 (13%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ ++ Y+ G + ARQ F +MP+RD V + +MIDGY++ A LF M
Sbjct: 127 DLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLVESAGELFDLMP 186
Query: 75 TSNIRRDEFTTVRILTTF------------------NNDIFVGIALIDMYCKCGDVEKAQ 116
+R+ T ++ + D+ ++I Y K G +E A+
Sbjct: 187 RE--KRNLITWNSMIGGYAQRADGVNVASKLFDEMPEKDLISWNSMIGGYVKHGRIEDAK 244
Query: 117 RVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
+F M R+D TW MI G G A +F QM D V Y ++S N
Sbjct: 245 GLFDVMPRRDVVTWAIMIDGYGKLGLVHQAKTLFDQMPHR----DVVAYNSMMSGFVQN 299
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 21/132 (15%)
Query: 45 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFN----------- 93
+D LW A+I + R+AL LF M + + D+F+ +L +
Sbjct: 56 KDPFLWNAVIKSHSHGADPRKALLLFCLMLENGVLVDKFSMSLVLKACSRLGFAKEGMQV 115
Query: 94 ----------NDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHG 143
+D+F+ LI +Y KCG + A++VF +M ++D ++ +MI G G
Sbjct: 116 HGFLIKSRTWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLV 175
Query: 144 DTALDMFSQMLR 155
++A ++F M R
Sbjct: 176 ESAGELFDLMPR 187
>gi|255583218|ref|XP_002532374.1| basic helix-loop-helix-containing protein, putative [Ricinus
communis]
gi|223527930|gb|EEF30017.1| basic helix-loop-helix-containing protein, putative [Ricinus
communis]
Length = 310
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 107/195 (54%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +F M K+ +W T++ GY ++ A F+QM ERD + WT M++ Y +
Sbjct: 92 MSSARRLFDMMPEKNTAAWNTLIYGYSKLRDLESAEFLFSQMHERDIISWTTMVNCYAQN 151
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
+F EAL +F +M + I DE T +++ F+ D+++G
Sbjct: 152 KKFGEALVVFNQMIKTGICPDEVTMATVISACAHLGALDLGKEIHLYVMQNGFDLDVYIG 211
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
+LIDMY KCG ++++ VF+K+ K+ F W ++I GLA G+ AL+MF +M R I+
Sbjct: 212 SSLIDMYAKCGSLDRSLLVFFKLQEKNLFCWNSVIEGLAAHGYAKEALEMFRKMGREKIK 271
Query: 160 LDEVTYVGVLSACTH 174
+ VT++ VL+AC H
Sbjct: 272 PNGVTFISVLNACAH 286
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 71/155 (45%), Gaps = 18/155 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T +V Y G++ +++ F +MPERD W M+ R+ A LF M N
Sbjct: 49 TALVDFYSTVGRIIESKKVFDEMPERDIFAWATMVTSLARIGDMSSARRLFDMMPEKN-- 106
Query: 80 RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAI 139
T N + G Y K D+E A+ +F +M +D +WT M+ A
Sbjct: 107 ----------TAAWNTLIYG------YSKLRDLESAEFLFSQMHERDIISWTTMVNCYAQ 150
Query: 140 SGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+ AL +F+QM++ I DEVT V+SAC H
Sbjct: 151 NKKFGEALVVFNQMIKTGICPDEVTMATVISACAH 185
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
+ +FV AL+D Y G + ++++VF +M +D F W M+ LA G +A +F
Sbjct: 41 LESHVFVQTALVDFYSTVGRIIESKKVFDEMPERDIFAWATMVTSLARIGDMSSARRLFD 100
Query: 152 QM 153
M
Sbjct: 101 MM 102
>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like, partial [Cucumis sativus]
Length = 610
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 99/196 (50%), Gaps = 22/196 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A ++F M +D +SW T+++GY N G V+ Q F +MPER+ W +I GY
Sbjct: 236 MKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHN 295
Query: 61 NRFREALTLFREMQTSN-IRRDEFTTVRILTT---------------------FNNDIFV 98
F E L F+ M + ++ T V +L+ F I+V
Sbjct: 296 GCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYV 355
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
G ALIDMY KCG +E A VF M KD TW +MI GLA G G AL +F QM
Sbjct: 356 GNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGE 415
Query: 159 RLDEVTYVGVLSACTH 174
+ D +T++GVL +CTH
Sbjct: 416 KPDGITFIGVLCSCTH 431
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 91/174 (52%), Gaps = 19/174 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A ++F M +++++WT+++SGYI +V +AR+ F PERD VLW M+ GY+ +
Sbjct: 174 IGSAYKLFVGMLERNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEI 233
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
+ A LF M RD + +L + N+ GDVE +++F
Sbjct: 234 GDMKAARKLFDTMPY----RDTMSWNTMLNGYANN--------------GDVEACEQLFE 275
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL-DEVTYVGVLSACT 173
+M ++ F+W +I G A +G L F +ML + + ++ T V VLSAC
Sbjct: 276 EMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACA 329
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 21/138 (15%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+V+ ++ Q+ AR F P+ LW A+ GY +RE + LF +M++ ++R
Sbjct: 61 PNVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVR 120
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
+ FT +L + + FV LID+Y + A ++
Sbjct: 121 PNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKL 180
Query: 119 FWKMLRKDKFTWTAMIVG 136
F ML ++ WT+MI G
Sbjct: 181 FVGMLERNIVAWTSMISG 198
>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 624
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 68/191 (35%), Positives = 102/191 (53%), Gaps = 22/191 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M + V+S T +++ Y N G +D AR+ F +P +D++ W AMIDGY + + EA
Sbjct: 176 LFDEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEA 235
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNN----------------------DIFVGIALID 104
L LFR M S+ DE T V +L+ ++ V AL+D
Sbjct: 236 LQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVD 295
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVT 164
MYCKCG +E A VF + KD W AMI G A+ G AL+MF Q+ + ++T
Sbjct: 296 MYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLWPTDIT 355
Query: 165 YVGVLSACTHN 175
++G+L+AC+H+
Sbjct: 356 FIGLLNACSHS 366
>gi|345505218|gb|AEN99833.1| chlororespiratory reduction 4 [Crucihimalaya wallichii]
Length = 617
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 75/192 (39%), Positives = 111/192 (57%), Gaps = 24/192 (12%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFR-E 65
+F M +DV++W+T++ GY G V A+ F QMP RD V + +MI GY++ NR+ E
Sbjct: 278 LFDVMPRRDVVTWSTMIDGYAKLGFVHQAKTLFDQMPHRDVVSYNSMIAGYVQ-NRYNME 336
Query: 66 ALTLFREMQT-SNIRRDEFTTVRILTTF-----------------NNDIFVG----IALI 103
AL +F +M+ S++ DE T V +L+ F+G +ALI
Sbjct: 337 ALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVALI 396
Query: 104 DMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEV 163
DMY KCG ++ A VF + K W AMI GLAI G G++A DM Q+ R SI+ D++
Sbjct: 397 DMYSKCGSIQHAMLVFKGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDI 456
Query: 164 TYVGVLSACTHN 175
T+VG+L+AC+H+
Sbjct: 457 TFVGLLNACSHS 468
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 61/172 (35%), Positives = 92/172 (53%), Gaps = 22/172 (12%)
Query: 4 ALEIFGNMKN--KDVISWTTIVSGYINRGQ-VDIARQYFAQMPERDYVLWTAMIDGYLRV 60
A E+F M K++ISW +++SGY VDIA + F++MP++D + W +MIDGY++
Sbjct: 210 ARELFDLMPEEMKNLISWNSMISGYAQTSDGVDIASKLFSEMPDKDLISWNSMIDGYVKH 269
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
R +A LF M RRD T +ID Y K G V +A+ +F
Sbjct: 270 GRIEDAKYLFDVMP----RRDVVTWS--------------TMIDGYAKLGFVHQAKTLFD 311
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS-IRLDEVTYVGVLSA 171
+M +D ++ +MI G + + AL++FS M + S + DE T V VLSA
Sbjct: 312 QMPHRDVVSYNSMIAGYVQNRYNMEALEIFSDMEKESHLSPDETTLVIVLSA 363
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 56/197 (28%), Positives = 87/197 (44%), Gaps = 34/197 (17%)
Query: 4 ALEIFGNMKN----KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR 59
++I G +K D+ ++ Y+ G + ARQ F +MP+RD V + +MIDGY++
Sbjct: 144 GMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGWLGFARQIFDRMPQRDSVSYNSMIDGYVK 203
Query: 60 VNRFREALTLFREM------------------QTS---NIRRDEFTTVRILTTFNNDIFV 98
A LF M QTS +I F+ + + D+
Sbjct: 204 CGSTESARELFDLMPEEMKNLISWNSMISGYAQTSDGVDIASKLFSEMP-----DKDLIS 258
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
++ID Y K G +E A+ +F M R+D TW+ MI G A G A +F QM
Sbjct: 259 WNSMIDGYVKHGRIEDAKYLFDVMPRRDVVTWSTMIDGYAKLGFVHQAKTLFDQMPHR-- 316
Query: 159 RLDEVTYVGVLSACTHN 175
D V+Y +++ N
Sbjct: 317 --DVVSYNSMIAGYVQN 331
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 21/129 (16%)
Query: 46 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL---------------- 89
D LW A+I + R AL LF M + + D+F+ +L
Sbjct: 89 DXYLWNAVIKSHSHGTDPRRALLLFCLMLENGVSVDKFSLSLVLKACSRLGLVKEGMQIH 148
Query: 90 -----TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGD 144
T +D+F+ LI +Y KCG + A+++F +M ++D ++ +MI G G +
Sbjct: 149 GFLKKTGLWSDLFLQNCLIGLYLKCGWLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSTE 208
Query: 145 TALDMFSQM 153
+A ++F M
Sbjct: 209 SARELFDLM 217
>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 652
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 99/196 (50%), Gaps = 22/196 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A ++F M +D +SW T+++GY N G V+ Q F +MPER+ W +I GY
Sbjct: 278 MKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHN 337
Query: 61 NRFREALTLFREMQTSN-IRRDEFTTVRILTT---------------------FNNDIFV 98
F E L F+ M + ++ T V +L+ F I+V
Sbjct: 338 GCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYV 397
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
G ALIDMY KCG +E A VF M KD TW +MI GLA G G AL +F QM
Sbjct: 398 GNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGE 457
Query: 159 RLDEVTYVGVLSACTH 174
+ D +T++GVL +CTH
Sbjct: 458 KPDGITFIGVLCSCTH 473
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 90/174 (51%), Gaps = 19/174 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A ++F M +++++WT+++SGYI +V +AR+ F PERD VLW M+ GY+ +
Sbjct: 216 IGSAYKLFVGMLERNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEI 275
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
+ A LF M RD + +L + N+ GDVE +++F
Sbjct: 276 GDMKAARKLFDTMP----YRDTMSWNTMLNGYANN--------------GDVEACEQLFE 317
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML-RASIRLDEVTYVGVLSACT 173
+M ++ F+W +I G A +G L F +ML + ++ T V VLSAC
Sbjct: 318 EMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACA 371
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 21/138 (15%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+V+ ++ Q+ AR F P+ LW A+ GY +RE + LF +M++ ++R
Sbjct: 103 PNVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVR 162
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
+ FT +L + + FV LID+Y + A ++
Sbjct: 163 PNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKL 222
Query: 119 FWKMLRKDKFTWTAMIVG 136
F ML ++ WT+MI G
Sbjct: 223 FVGMLERNIVAWTSMISG 240
>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 105/192 (54%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +IF M KD+I+W T++SGY+N G+++ A+ +FAQMPE++ + WT MI G +
Sbjct: 347 ARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFG 406
Query: 64 REALTLFREMQTSNIRRDEF------TTVRILTTFNND---------------IFVGIAL 102
+AL LF +M+ +++ T +L N + VG A+
Sbjct: 407 EQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAM 466
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I MY +CG VE A+ +F M D +W +MI L GHG A++++ QML+ I D
Sbjct: 467 ITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDR 526
Query: 163 VTYVGVLSACTH 174
T++ VLSAC+H
Sbjct: 527 RTFLTVLSACSH 538
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 103/229 (44%), Gaps = 56/229 (24%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A ++F M ++ WTT+++GY+ G + AR+ M E+ + W AMI GYL
Sbjct: 208 MASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHH 267
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNND---- 95
F +ALTLFR+M+ ++ DE T +++ N D
Sbjct: 268 GLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFL 327
Query: 96 IFVGIALIDMYCKCGDVEKAQRVFWKMLRKD----------------------------- 126
+ VG LI +Y K G V+ A+++F++M KD
Sbjct: 328 LSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPE 387
Query: 127 --KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
TWT MI GLA +G G+ AL +F+QM ++ + G ++AC+
Sbjct: 388 KNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACS 436
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 107/235 (45%), Gaps = 64/235 (27%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRV 60
+A ++F + DVI+ TT+++ Y G + +AR+ F + P RD V + AMI GY +
Sbjct: 66 YARKLFDEIPQPDVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHM 125
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT--------------------FNNDIFVGI 100
N A+ LFR M+ +N + D+FT +L+ F +IF +
Sbjct: 126 NDGHSAIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAV 185
Query: 101 --ALIDMYCKCG---------DVEKAQRVFWKMLRKDKFTWTAMIVGLA----------- 138
AL+ +Y KC + A+++F +M ++++F WT +I G
Sbjct: 186 LNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREI 245
Query: 139 ---------------ISG---HG--DTALDMFSQMLRASIRLDEVTYVGVLSACT 173
ISG HG + AL +F +M +++DE TY V+SAC
Sbjct: 246 LDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACA 300
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 24/170 (14%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+++ Y G V+ AR F MP D V W +MI + +A+ L+ +M I
Sbjct: 464 NAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGIL 523
Query: 80 RDEFTTVRILTTFNNDIFV--------------GIA--------LIDMYCKCGDVEKAQR 117
D T + +L+ ++ V GIA +ID++C+ G A+
Sbjct: 524 PDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKN 583
Query: 118 VFWKMLRKDKFT-WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYV 166
V M + + W A++ G G+ D ++ ++ + I + TYV
Sbjct: 584 VIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKL-IPQHDGTYV 632
>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
Length = 643
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 67/192 (34%), Positives = 105/192 (54%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M ++++SW +++SG++ G V+ A F++MP RD V W +M+ Y + +
Sbjct: 116 AKRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKP 175
Query: 64 REALTLFREMQTSNIRRDEFTTVRILT---------------TFNND------IFVGIAL 102
EAL LF +M+ ++ E T V +L+ T+ ND VG AL
Sbjct: 176 NEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTAL 235
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY KCG + A +VF M KD W +I G+AI GH A +F +M AS+ ++
Sbjct: 236 VDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPND 295
Query: 163 VTYVGVLSACTH 174
+T+V +LSAC+H
Sbjct: 296 ITFVAMLSACSH 307
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 56/174 (32%), Positives = 91/174 (52%), Gaps = 18/174 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A ++F ++DV+SW ++ GY+ RG++ R F +M RD + W +I+GY V
Sbjct: 51 LGAAKQLFSLCSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDVISWNTIINGYAIV 110
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
+ EA LF EM N L ++N +++ + KCG+VE+A +F
Sbjct: 111 GKIDEAKRLFDEMPERN-----------LVSWN-------SMLSGFVKCGNVEEAFGLFS 152
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+M +D +W +M+ A G + AL +F QM ++ E T V +LSAC H
Sbjct: 153 EMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAH 206
Score = 42.4 bits (98), Expect = 0.071, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE 44
+ A ++F M++KDV++W TI++G G V A+Q F +M E
Sbjct: 245 ISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKE 288
>gi|115452665|ref|NP_001049933.1| Os03g0314400 [Oryza sativa Japonica Group]
gi|108707812|gb|ABF95607.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113548404|dbj|BAF11847.1| Os03g0314400 [Oryza sativa Japonica Group]
gi|125586044|gb|EAZ26708.1| hypothetical protein OsJ_10614 [Oryza sativa Japonica Group]
Length = 648
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 71/193 (36%), Positives = 106/193 (54%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F + + D SW ++++GY+ G V A++ F MP++D V WT MI G ++ ++
Sbjct: 320 ARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQS 379
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
EALT+F MQ I+ DE T V +++ N + +G +L
Sbjct: 380 SEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSL 439
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL-D 161
IDMY KCG +E A VF M + W A+IVGLA++G +LDMFS+M +S +
Sbjct: 440 IDMYMKCGCLESALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMESSSTATPN 499
Query: 162 EVTYVGVLSACTH 174
E+T+ GVLSAC H
Sbjct: 500 EITFTGVLSACRH 512
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 66/223 (29%), Positives = 95/223 (42%), Gaps = 52/223 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+ +F M + + +++VS + RG VD AR+ F + +D WTAMI + R +F
Sbjct: 188 AVGVFARMPERGAAAVSSMVSLFGRRGMVDEARKVFDVVERKDVFTWTAMISCFQRNGKF 247
Query: 64 REALTLFREMQTSNIRRDEFTTV-------RILTTFNNDIFVGI--------------AL 102
EAL LF +M+ DE V R+ T N ++ G+ AL
Sbjct: 248 AEALALFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNAL 307
Query: 103 IDMYC-------------------------------KCGDVEKAQRVFWKMLRKDKFTWT 131
I MY K G V+ A+ +F M KD +WT
Sbjct: 308 IHMYSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWT 367
Query: 132 AMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
MI G + AL +F+ M I+ DEVT V V+SACT+
Sbjct: 368 TMISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTN 410
>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
Length = 894
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 106/186 (56%), Gaps = 22/186 (11%)
Query: 11 MKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 70
M K+V+SW +++G+ G+++ AR F QMP R+ V WT +IDGY R + EA+ LF
Sbjct: 1 MPMKNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALF 60
Query: 71 REMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKC 109
R M I E T + ++ +N D VG +LID+Y K
Sbjct: 61 RHMMAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKI 120
Query: 110 GDVEKAQRVFWKML-RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGV 168
G V+ + +VF +ML R++ +WT++I G A+ G AL++F++M RA IR + +T++ V
Sbjct: 121 GSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSV 180
Query: 169 LSACTH 174
++AC+H
Sbjct: 181 INACSH 186
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 107/192 (55%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F MK+K+ ++ ++ Y G + A++ F Q+P +D + W++MI Y + + F
Sbjct: 565 AEKVFSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHF 624
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTF------------------NN---DIFVGIAL 102
++L LFR+MQ + ++ D +L+ NN D + +L
Sbjct: 625 SDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKTDTIMENSL 684
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDM+ KCG +++A +VF +M KD +W ++I+GLA +G D AL++F ML R +E
Sbjct: 685 IDMFAKCGCMQEALQVFTEMEEKDTLSWNSIILGLANNGFEDEALNIFYSMLTEGPRPNE 744
Query: 163 VTYVGVLSACTH 174
VT++GVL AC +
Sbjct: 745 VTFLGVLIACAN 756
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 101/226 (44%), Gaps = 61/226 (26%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+GF L+IF + +++ Y G + AR F +M +D V W ++I GY +
Sbjct: 439 LGFLLDIFVS---------NSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQR 489
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVG 99
NRF+E L LF MQ ++ D+ T V++++ + D+++G
Sbjct: 490 NRFKEVLALFELMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIERNHIEVDVYLG 549
Query: 100 IALIDMYCKCGDVEKAQRVFWKM-------------------------------LRKDKF 128
LID YC+ G ++ A++VF +M KD
Sbjct: 550 NTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLI 609
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+W++MI + + H +L++F QM RA ++ D V VLSAC H
Sbjct: 610 SWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAH 655
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 21/161 (13%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT--- 91
A + F Q+ LW ++ G + + ++A+ +++ Q ++ D T +L
Sbjct: 363 AHKVFEQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAK 422
Query: 92 ------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
F DIFV +LI +Y CGD+ A+ +F +ML KD +W ++
Sbjct: 423 TYAPKEGEQMHSHVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSL 482
Query: 134 IVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
I G + L +F M ++ D+VT V V+SACTH
Sbjct: 483 IGGYSQRNRFKEVLALFELMQAEEVQADKVTMVKVISACTH 523
>gi|125543615|gb|EAY89754.1| hypothetical protein OsI_11297 [Oryza sativa Indica Group]
Length = 648
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 71/193 (36%), Positives = 106/193 (54%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F + + D SW ++++GY+ G V A++ F MP++D V WT MI G ++ ++
Sbjct: 320 ARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQS 379
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
EALT+F MQ I+ DE T V +++ N + +G +L
Sbjct: 380 SEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSL 439
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL-D 161
IDMY KCG +E A VF M + W A+IVGLA++G +LDMFS+M +S +
Sbjct: 440 IDMYMKCGCLESALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMESSSTATPN 499
Query: 162 EVTYVGVLSACTH 174
E+T+ GVLSAC H
Sbjct: 500 EITFTGVLSACRH 512
Score = 87.8 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 66/223 (29%), Positives = 95/223 (42%), Gaps = 52/223 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+ +F M + + +++VS + RG VD AR+ F + +D WTAMI + R +F
Sbjct: 188 AVGVFARMPERGAAAVSSMVSLFGRRGMVDEARKVFDGVERKDVFTWTAMISCFQRNGKF 247
Query: 64 REALTLFREMQTSNIRRDEFTTV-------RILTTFNNDIFVGI--------------AL 102
EAL LF +M+ DE V R+ T N ++ G+ AL
Sbjct: 248 AEALALFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNAL 307
Query: 103 IDMYC-------------------------------KCGDVEKAQRVFWKMLRKDKFTWT 131
I MY K G V+ A+ +F M KD +WT
Sbjct: 308 IHMYSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWT 367
Query: 132 AMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
MI G + AL +F+ M I+ DEVT V V+SACT+
Sbjct: 368 TMISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTN 410
>gi|62321090|dbj|BAD94184.1| hypothetical protein [Arabidopsis thaliana]
Length = 577
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 105/195 (53%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A + M K+ + +++GY+ G ++ A F QMP +D + WT MI GY +
Sbjct: 206 MDSANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQN 265
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILT-----------------TFNN----DIFVG 99
R+REA+ +F +M I DE T +++ T N D+++G
Sbjct: 266 KRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIG 325
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+DMY KCG +E+A VF+ + +K+ F W ++I GLA G AL MF++M S++
Sbjct: 326 SALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVK 385
Query: 160 LDEVTYVGVLSACTH 174
+ VT+V V +ACTH
Sbjct: 386 PNAVTFVSVFTACTH 400
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 18/155 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
TT++ Y G + AR+ F +MPERD + WT M+ Y RV A +L +M N
Sbjct: 163 TTLIDFYSATGGIREARKVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQMSEKN-- 220
Query: 80 RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAI 139
E T+ LI+ Y G++E+A+ +F +M KD +WT MI G +
Sbjct: 221 --EATSN--------------CLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQ 264
Query: 140 SGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+ A+ +F +M+ I DEVT V+SAC H
Sbjct: 265 NKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAH 299
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 19/141 (13%)
Query: 32 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT 91
+D+A QM E + ++ A+ G++ + +L L+ M ++ +T ++
Sbjct: 76 LDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKA 135
Query: 92 -------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA 132
F + + LID Y G + +A++VF +M +D WT
Sbjct: 136 SSFASRFGESLQAHIWKFGFGFHVKIQTTLIDFYSATGGIREARKVFDEMPERDDIAWTT 195
Query: 133 MIVGLAISGHGDTALDMFSQM 153
M+ D+A + +QM
Sbjct: 196 MVSAYRRVLDMDSANSLANQM 216
>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 740
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 69/193 (35%), Positives = 105/193 (54%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M+ KD ++WTT++ GY + AR+ MP++D V W A+I Y + +
Sbjct: 288 AKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKP 347
Query: 64 REALTLFREMQ-TSNIRRDEFTTVRILTT---------------------FNNDIFVGIA 101
EAL +F E+Q NI+ ++ T V L+ + +V A
Sbjct: 348 NEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSA 407
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LI MY KCGD+EKA+ VF + ++D F W+AMI GLA+ G G A+DMF +M A+++ +
Sbjct: 408 LIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPN 467
Query: 162 EVTYVGVLSACTH 174
VT+ V AC+H
Sbjct: 468 GVTFTNVFCACSH 480
Score = 92.0 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 58/213 (27%), Positives = 100/213 (46%), Gaps = 53/213 (24%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV +++ Y + G +D A + F + E+D V W +MI+G+++ +AL LF++M+
Sbjct: 167 DVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKME 226
Query: 75 TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVE 113
+ +++ T V +L+ N ++ + A++DMY KCG +E
Sbjct: 227 SEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIE 286
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAIS-------------------------------GH 142
A+R+F M KD TWT M+ G AIS G
Sbjct: 287 DAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGK 346
Query: 143 GDTALDMFSQM-LRASIRLDEVTYVGVLSACTH 174
+ AL +F ++ L+ +I+L+++T V LSAC
Sbjct: 347 PNEALLVFHELQLQKNIKLNQITLVSTLSACAQ 379
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 23/166 (13%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR--RDEFT--- 84
++ AR+ F ++P+ + W +I Y ++ F +M +S + +++T
Sbjct: 79 ASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPF 138
Query: 85 ------------------TVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKD 126
+ I + +D+FV +LI Y CGD++ A +VF + KD
Sbjct: 139 LIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKD 198
Query: 127 KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+W +MI G G D AL++F +M ++ VT VGVLSAC
Sbjct: 199 VVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSAC 244
>gi|242042383|ref|XP_002468586.1| hypothetical protein SORBIDRAFT_01g048560 [Sorghum bicolor]
gi|241922440|gb|EER95584.1| hypothetical protein SORBIDRAFT_01g048560 [Sorghum bicolor]
Length = 581
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 69/181 (38%), Positives = 97/181 (53%), Gaps = 21/181 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV+SWTT+V G + G+VD AR+ F MPER+ V W AM+ GY++ RF +AL +F EM+
Sbjct: 170 DVVSWTTMVGGLVKLGRVDDARELFDGMPERNLVSWNAMMSGYVKTGRFLDALEVFDEMR 229
Query: 75 TSNI---------------------RRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVE 113
+ R E + D + A++DMYCKCG VE
Sbjct: 230 ARGVDGNAFVAATAVVACTGAGALARGREVHRWVERSGIEMDDKLATAVVDMYCKCGCVE 289
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+A RVF + + +W MI G A+ G G+ AL++F M R + D+VT V VL+AC
Sbjct: 290 EAWRVFEALPARGLTSWNCMIGGFAVHGRGEDALNLFGLMEREGVAPDDVTLVNVLTACA 349
Query: 174 H 174
H
Sbjct: 350 H 350
>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 70/196 (35%), Positives = 106/196 (54%), Gaps = 22/196 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A E+F M ++++SW+T+V GY G +D+AR F + P ++ VLWT +I GY
Sbjct: 235 MDTAFELFERMPWRNIVSWSTMVCGYSKGGDMDMARMLFDRCPVKNVVLWTTIIAGYAEK 294
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGI-------------------- 100
REA L+ +M+ + +R D+ + IL +G+
Sbjct: 295 GLAREATELYGKMEEAGMRPDDGFLLSILAACAESGMLGLGKRIHASMRRWRFRCGAKVL 354
Query: 101 -ALIDMYCKCGDVEKAQRVFWKML-RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
A IDMY KCG ++ A VF M+ +KD +W +MI G A+ GHG+ AL++FS M++
Sbjct: 355 NAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSWMVQEGF 414
Query: 159 RLDEVTYVGVLSACTH 174
D T+VG+L ACTH
Sbjct: 415 EPDTYTFVGLLCACTH 430
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 48/172 (27%), Positives = 86/172 (50%), Gaps = 18/172 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+ +F M+ +DV++W +++ G + G++ A + F +MP+RD V W M+DGY +
Sbjct: 176 AMSLFLAMEERDVVTWNSMIGGLVRCGELQGACKLFDEMPDRDMVSWNTMLDGYAKAGEM 235
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
A LF M NI ++T ++ Y K GD++ A+ +F +
Sbjct: 236 DTAFELFERMPWRNIV--SWST----------------MVCGYSKGGDMDMARMLFDRCP 277
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
K+ WT +I G A G A +++ +M A +R D+ + +L+AC +
Sbjct: 278 VKNVVLWTTIIAGYAEKGLAREATELYGKMEEAGMRPDDGFLLSILAACAES 329
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 24/143 (16%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFREMQTSNIRRDEFT--------- 84
A F +P + L+ ++I + + R F +MQ + + D FT
Sbjct: 72 AVNVFNHVPHPNVHLYNSIIRAHAHNSSHRSLPFNAFFQMQKNGLFPDNFTYPFLLKACS 131
Query: 85 ------TVRILTT------FNNDIFVGIALIDMYCKCGD--VEKAQRVFWKMLRKDKFTW 130
VR++ F DIFV +LID Y +CG+ ++ A +F M +D TW
Sbjct: 132 GPSSLPLVRMIHAHVEKIGFYGDIFVPNSLIDSYSRCGNAGLDGAMSLFLAMEERDVVTW 191
Query: 131 TAMIVGLAISGHGDTALDMFSQM 153
+MI GL G A +F +M
Sbjct: 192 NSMIGGLVRCGELQGACKLFDEM 214
>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 591
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 100/181 (55%), Gaps = 21/181 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV ++ Y+ ++ A + F +MP ++ V W AMI G R+REAL FR MQ
Sbjct: 247 DVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRMMQ 306
Query: 75 TSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVE 113
++ DE T V +L + N D FVG AL+DMY KCG ++
Sbjct: 307 DKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNALLDMYAKCGSID 366
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+A RVF M R+D +++TAMI GLA+ G + A +FS+M R I +EVT++G+L AC+
Sbjct: 367 EAFRVFESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACS 426
Query: 174 H 174
H
Sbjct: 427 H 427
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 82/166 (49%), Gaps = 22/166 (13%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G + ++ F + P RD V WT +I + + + A+ F EM +R D T V +L
Sbjct: 160 GSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVL 219
Query: 90 TTFNN----------------------DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDK 127
+ +N D+FVG AL+DMY KC D+ A +VF +M K+
Sbjct: 220 SACSNLGDLNLGQKVHSYIRHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNV 279
Query: 128 FTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
TW AMI GLA G ALD F M ++ DEVT VGVL++C
Sbjct: 280 VTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCA 325
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%)
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML 154
+++V L+ +Y CG + Q+VF + +D +WT +I +G A++ F +M
Sbjct: 145 NVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVEAFMEMC 204
Query: 155 RASIRLDEVTYVGVLSACT 173
+R D T V VLSAC+
Sbjct: 205 DLRLRADGRTLVVVLSACS 223
>gi|357119066|ref|XP_003561267.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 588
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 104/193 (53%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A IF KDV+SWT ++S Y G +D+A++ F QMP ++ V W AMI GY +R+
Sbjct: 253 ARSIFYQTDQKDVVSWTAMISAYAKIGNLDLAKELFDQMPVKNLVSWNAMITGYNHNSRY 312
Query: 64 REALTLFREMQTSN-IRRDEFTTVRILTTF-------------------NNDIFV--GIA 101
EAL F+ M R DE T V +++ NND+ V G A
Sbjct: 313 DEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSAEYCSWVSSFIRKNNNDLTVALGNA 372
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDM+ KCGDV +AQ +F M + TWT MI GL +G AL +++ M R + LD
Sbjct: 373 LIDMFAKCGDVGRAQLIFSGMKSRCVITWTTMISGLGFNGQCREALLVYNDMCREGVGLD 432
Query: 162 EVTYVGVLSACTH 174
+ ++ VL+AC+H
Sbjct: 433 DTVFIAVLAACSH 445
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 88/188 (46%), Gaps = 14/188 (7%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A ++F M KDVISW +IV Y++ G V A + F MPER+ V W ++ + RV
Sbjct: 157 VGDARQVFDEMIEKDVISWNSIVGVYMSSGDVKGAMELFEVMPERNVVSWNTVVASFARV 216
Query: 61 NRFREALTLFREMQTSN-----------IRRDEFTTVRIL--TTFNNDIFVGIALIDMYC 107
A +F M T N + R + T D+ A+I Y
Sbjct: 217 GDMASAQAVFDRMPTRNAISWNLMISGYAAGGDVEAARSIFYQTDQKDVVSWTAMISAYA 276
Query: 108 KCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS-QMLRASIRLDEVTYV 166
K G+++ A+ +F +M K+ +W AMI G + D AL F ML R DE T V
Sbjct: 277 KIGNLDLAKELFDQMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLV 336
Query: 167 GVLSACTH 174
V+SAC
Sbjct: 337 SVVSACAQ 344
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 24/125 (19%)
Query: 43 PERDYVLWTAM------IDGY-----LRVNRFREALTLFREMQTSNIRRDEFTTVRILTT 91
PE +TAM +G+ LR F L L R + ++
Sbjct: 84 PEDALTAYTAMRAVEVPPNGFTFTFLLRACEFSRILPLCRRIHGQILK----------CG 133
Query: 92 FNNDIFVGIALIDMYCKC---GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALD 148
F D+ V AL+D+Y KC G V A++VF +M+ KD +W +++ SG A++
Sbjct: 134 FGRDVVVQNALLDVYHKCSNPGYVGDARQVFDEMIEKDVISWNSIVGVYMSSGDVKGAME 193
Query: 149 MFSQM 153
+F M
Sbjct: 194 LFEVM 198
>gi|357503973|ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355497290|gb|AES78493.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 541
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 66/197 (33%), Positives = 109/197 (55%), Gaps = 25/197 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +DV+SW ++V GY+ G+V++A F +M R+ + W ++I G ++
Sbjct: 183 ARKVFDEMFVRDVVSWNSMVVGYLRNGEVEMALNLFRKMNGRNIITWNSIITGLVQAGHA 242
Query: 64 REALTLFREMQTSN----IRRDEFTTVRILTT---------------------FNNDIFV 98
+E+L +F EMQ + ++ D+ T +L+ D+ +
Sbjct: 243 KESLEIFHEMQFLSGDDVVKPDKITIASVLSACALLGSIDHGKWVHAYLRKNDIECDVVI 302
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
G AL++MY KCGDV++A +F M KD WTAMI A+ G G A D F +M +A +
Sbjct: 303 GTALVNMYGKCGDVQQAIEIFNDMPEKDASAWTAMISVFALHGFGKKAFDCFLEMEKAGV 362
Query: 159 RLDEVTYVGVLSACTHN 175
+ + VT+VG+LSAC+H+
Sbjct: 363 KPNHVTFVGLLSACSHS 379
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 40/62 (64%)
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
F ND+FVG +LI ++ G + A++VF +M +D +W +M+VG +G + AL++F
Sbjct: 160 FLNDVFVGNSLISLFMNFGLSKNARKVFDEMFVRDVVSWNSMVVGYLRNGEVEMALNLFR 219
Query: 152 QM 153
+M
Sbjct: 220 KM 221
>gi|255562657|ref|XP_002522334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538412|gb|EEF40018.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 507
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 106/192 (55%), Gaps = 22/192 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +D+ SW ++SG G + AR+ F MPERD WTAMI GY+R NR
Sbjct: 134 AQKLFEEMGERDLCSWNVLISGCAKMGLLKEARKLFDTMPERDNFSWTAMISGYVRHNRP 193
Query: 64 REALTLFREMQ-TSNIRRDEFTTVRIL---------------------TTFNNDIFVGIA 101
EAL L+R M+ N+ ++FT +L T ++D V A
Sbjct: 194 HEALELYRLMKKCENLTSNKFTVSSVLAAAAAIPCLRIGKEIHGYIMRTGLDSDEVVWSA 253
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L DMY KCG +E+A+ +F KM+ +D TWTAMI G + ++F+++LR+ I+ +
Sbjct: 254 LSDMYGKCGSIEEARHIFDKMVNRDVVTWTAMIDRYFEDGRREEGFELFAELLRSGIKPN 313
Query: 162 EVTYVGVLSACT 173
+ T+ GVL+AC
Sbjct: 314 DFTFAGVLNACA 325
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 93/183 (50%), Gaps = 21/183 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ D + W+ + Y G ++ AR F +M RD V WTAMID Y R E LF E
Sbjct: 245 DSDEVVWSALSDMYGKCGSIEEARHIFDKMVNRDVVTWTAMIDRYFEDGRREEGFELFAE 304
Query: 73 MQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGD 111
+ S I+ ++FT +L F+ F AL+ MY KCG+
Sbjct: 305 LLRSGIKPNDFTFAGVLNACADLGVEGIGKQVHGHMTRADFDPFSFAASALVHMYSKCGN 364
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+ A+RVF M + D +WT++I G A +GH D AL F +L++ R D +T+VGVLSA
Sbjct: 365 MVNAERVFRGMPQPDLVSWTSLIAGYAQNGHPDEALQYFELLLKSGTRPDHITFVGVLSA 424
Query: 172 CTH 174
C H
Sbjct: 425 CAH 427
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 89 LTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALD 148
L+ F + + L+DMY KC D+ AQ++F +M +D +W +I G A G A
Sbjct: 108 LSGFIPGLVISNRLLDMYAKCNDLVDAQKLFEEMGERDLCSWNVLISGCAKMGLLKEARK 167
Query: 149 MFSQM 153
+F M
Sbjct: 168 LFDTM 172
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYF 39
A +F M D++SWT++++GY G D A QYF
Sbjct: 368 AERVFRGMPQPDLVSWTSLIAGYAQNGHPDEALQYF 403
>gi|193806402|sp|Q56X05.2|PPR15_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06145; AltName: Full=Protein EMBRYO DEFECTIVE 1444
Length = 577
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 105/195 (53%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A + M K+ + +++GY+ G ++ A F QMP +D + WT MI GY +
Sbjct: 206 MDSANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQN 265
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILT-----------------TFNN----DIFVG 99
R+REA+ +F +M I DE T +++ T N D+++G
Sbjct: 266 KRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIG 325
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+DMY KCG +E+A VF+ + +K+ F W ++I GLA G AL MF++M S++
Sbjct: 326 SALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVK 385
Query: 160 LDEVTYVGVLSACTH 174
+ VT+V V +ACTH
Sbjct: 386 PNAVTFVSVFTACTH 400
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 78/155 (50%), Gaps = 18/155 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
TT++ Y G++ AR+ F +MPERD + WT M+ Y RV A +L +M N
Sbjct: 163 TTLIDFYSATGRIREARKVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQMSEKN-- 220
Query: 80 RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAI 139
E T+ LI+ Y G++E+A+ +F +M KD +WT MI G +
Sbjct: 221 --EATSN--------------CLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQ 264
Query: 140 SGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+ A+ +F +M+ I DEVT V+SAC H
Sbjct: 265 NKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAH 299
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/160 (19%), Positives = 64/160 (40%), Gaps = 19/160 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
N+D ++ + ++D+A QM E + ++ A+ G++ + +L L+
Sbjct: 57 NQDCRLMNQFITACTSFKRLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVR 116
Query: 73 MQTSNIRRDEFTTVRILTT-------------------FNNDIFVGIALIDMYCKCGDVE 113
M ++ +T ++ F + + LID Y G +
Sbjct: 117 MLRDSVSPSSYTYSSLVKASSFASRFGESLQAHIWKFGFGFHVKIQTTLIDFYSATGRIR 176
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+A++VF +M +D WT M+ D+A + +QM
Sbjct: 177 EARKVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQM 216
>gi|222619002|gb|EEE55134.1| hypothetical protein OsJ_02921 [Oryza sativa Japonica Group]
Length = 493
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 106/177 (59%), Gaps = 22/177 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+++VS Y G V+ AR+ F +MPER+ V WT+MI G + RF+EA+ LFR+MQ + ++
Sbjct: 147 SSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVK 206
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
D+ T ++++ ++ V +LIDMY KCGDV KA ++
Sbjct: 207 ADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQI 266
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML-RASIRLDEVTYVGVLSACTH 174
F + ++D FTWT MI+G A++G ALD+F+QM + +EV ++GVL+AC+H
Sbjct: 267 FHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSH 323
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 80/168 (47%), Gaps = 28/168 (16%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDY---------VLWTAMIDGYLRVNRFR 64
DV+SW TI++GYI G + A Q F QM + VL G ++V
Sbjct: 71 SDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLC 130
Query: 65 EALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124
AL +L F + ++G +L+ MY KCG VE+A+RVF +M
Sbjct: 131 HALV-------------------VLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPE 171
Query: 125 KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
++ WT+MI G SG A+D+F M A ++ D+ T V+S+C
Sbjct: 172 RNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSC 219
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 81 DEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--KDKFTWTAMIVGLA 138
+F + + + +D FV ALI+MY C A+ V R D +W +I G
Sbjct: 25 SQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVLDSAPRWASDVVSWNTIIAGYI 84
Query: 139 ISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
G + AL F QM + +RLDEVT + VL AC
Sbjct: 85 RGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACA 119
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 9 GNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALT 68
G+ K++ +++ Y G V+ A Q F + +RD WT MI G+ EAL
Sbjct: 237 GHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALD 296
Query: 69 LFREMQTSN-IRRDEFTTVRILTTFNNDIFV 98
LF +M+ + + +E + +LT ++ V
Sbjct: 297 LFAQMEGEDKVMPNEVIFLGVLTACSHGGLV 327
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 68/175 (38%), Positives = 99/175 (56%), Gaps = 22/175 (12%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
++ Y G +D AR F + E+D + W MI GY +N ++EAL LFR+MQ SN+ +
Sbjct: 305 LIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPN 364
Query: 82 EFTTVRILTT---------------FNNDIFVGI-------ALIDMYCKCGDVEKAQRVF 119
+ T V IL + + F+G+ +LIDMY KCG++E A++VF
Sbjct: 365 DVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVF 424
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
M K +W AMI GLA+ GH + AL++F QM D++T+VGVLSAC+H
Sbjct: 425 AGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSH 479
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 66/195 (33%), Positives = 109/195 (55%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G+A +F +D +S+T +++GY RG +D AR+ F ++P RD V W AMI GY +
Sbjct: 183 LGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQS 242
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
RF EAL F+EM+ +N+ +E T V +L+ +++ +
Sbjct: 243 GRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLV 302
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMY KCGD++KA+ +F + KD +W MI G + AL +F +M ++++
Sbjct: 303 NALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVE 362
Query: 160 LDEVTYVGVLSACTH 174
++VT+V +L AC +
Sbjct: 363 PNDVTFVSILPACAY 377
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 45/75 (60%)
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
ALI Y G ++ A+R+F ++ +D +W AMI G A SG + AL F +M RA++
Sbjct: 203 ALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAP 262
Query: 161 DEVTYVGVLSACTHN 175
+E T V VLSAC +
Sbjct: 263 NESTMVTVLSACAQS 277
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 25/156 (16%)
Query: 19 WTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 78
WT+++ Y G ++ A+Q FA M + W AMI G AL LFR+M+
Sbjct: 404 WTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGF 463
Query: 79 RRDEFTTVRILTTFNNDIFVGIA----------------------LIDMYCKCGDVEKAQ 116
D+ T V +L+ ++ V + +ID+ + G ++A+
Sbjct: 464 EPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAE 523
Query: 117 RVFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFS 151
+ M ++ D W +++ + HG+ L F+
Sbjct: 524 ALMKNMEMKPDGAIWGSLLGACRV--HGNVELGEFA 557
>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
Length = 748
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 68/175 (38%), Positives = 99/175 (56%), Gaps = 22/175 (12%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
++ Y G +D AR F + E+D + W MI GY +N ++EAL LFR+MQ SN+ +
Sbjct: 305 LIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPN 364
Query: 82 EFTTVRILTT---------------FNNDIFVGI-------ALIDMYCKCGDVEKAQRVF 119
+ T V IL + + F+G+ +LIDMY KCG++E A++VF
Sbjct: 365 DVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVF 424
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
M K +W AMI GLA+ GH + AL++F QM D++T+VGVLSAC+H
Sbjct: 425 AGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSH 479
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 66/195 (33%), Positives = 109/195 (55%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G+A +F +D +S+T +++GY RG +D AR+ F ++P RD V W AMI GY +
Sbjct: 183 LGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQS 242
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
RF EAL F+EM+ +N+ +E T V +L+ +++ +
Sbjct: 243 GRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLV 302
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMY KCGD++KA+ +F + KD +W MI G + AL +F +M ++++
Sbjct: 303 NALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVE 362
Query: 160 LDEVTYVGVLSACTH 174
++VT+V +L AC +
Sbjct: 363 PNDVTFVSILPACAY 377
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 45/75 (60%)
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
ALI Y G ++ A+R+F ++ +D +W AMI G A SG + AL F +M RA++
Sbjct: 203 ALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAP 262
Query: 161 DEVTYVGVLSACTHN 175
+E T V VLSAC +
Sbjct: 263 NESTMVTVLSACAQS 277
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 25/156 (16%)
Query: 19 WTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 78
WT+++ Y G ++ A+Q FA M + W AMI G AL LFR+M+
Sbjct: 404 WTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGF 463
Query: 79 RRDEFTTVRILTTFNNDIFVGIA----------------------LIDMYCKCGDVEKAQ 116
D+ T V +L+ ++ V + +ID+ + G ++A+
Sbjct: 464 EPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAE 523
Query: 117 RVFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFS 151
+ M ++ D W +++ + HG+ L F+
Sbjct: 524 ALMKNMEMKPDGAIWGSLLGACRV--HGNVELGEFA 557
>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
Length = 1031
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 105/189 (55%), Gaps = 22/189 (11%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 67
F M K+ +SW +++G+ G+V+ AR F +MP R+ V W+ MIDGY R R EA+
Sbjct: 147 FEEMPVKNAVSWNVVITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAV 206
Query: 68 TLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMY 106
LFR M I E T + ++ +N D+ VG +LID+Y
Sbjct: 207 ALFRRMMAEGISPSEITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLY 266
Query: 107 CKCGDVEKAQRVFWKML-RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
K G ++ + RVF +ML R++ +WT++I G A+ G A+++F+ M RA IR + +T+
Sbjct: 267 AKIGSIQNSLRVFDEMLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITF 326
Query: 166 VGVLSACTH 174
+ VL AC+H
Sbjct: 327 LSVLHACSH 335
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 108/192 (56%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F NMK +++++ +++ Y + AR+ F Q+P++D + W++MI GY + N F
Sbjct: 707 AEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHF 766
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTF------------------NN---DIFVGIAL 102
+AL +FR+MQ + ++ D ++++ NN D + +L
Sbjct: 767 SDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSL 826
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG ++A +VF +M KD +W ++I+GLA +G +L++F ML R +
Sbjct: 827 IDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPNG 886
Query: 163 VTYVGVLSACTH 174
VT++GVL AC +
Sbjct: 887 VTFLGVLIACAN 898
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 96/212 (45%), Gaps = 52/212 (24%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ +++ Y G + AR F +M +D V W ++I GY + NRF++ L LF+ MQ
Sbjct: 586 DIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQ 645
Query: 75 TSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVE 113
++ D+ T +++++ D+++G L+D + + G ++
Sbjct: 646 NEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQ 705
Query: 114 KAQRVFWKM-------------------------------LRKDKFTWTAMIVGLAISGH 142
A++VF+ M +KD +W++MI G + + H
Sbjct: 706 SAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANH 765
Query: 143 GDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
AL++F QM RA ++ D + V+S+C H
Sbjct: 766 FSDALEIFRQMQRAKVKPDAIVIASVVSSCAH 797
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 21/160 (13%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT--- 91
A + F Q+ LW +I G + + +A+ +++ Q + D T IL
Sbjct: 505 AHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACAR 564
Query: 92 ------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
+DIFV +LI +Y CG++ A+ VF +M+ KD +W ++
Sbjct: 565 INALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSL 624
Query: 134 IVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
I G + L +F M ++ D+VT + V+SACT
Sbjct: 625 ICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACT 664
>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 733
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 69/193 (35%), Positives = 101/193 (52%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +DV SWT ++ GY G D AR F MP ++ W +I Y + +
Sbjct: 281 AQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKP 340
Query: 64 REALTLFREMQTSNIRR-DEFTTVRILTT--------FNNDIFVGI-------------A 101
+EAL +F E+Q S I + DE T V L+ I V I +
Sbjct: 341 KEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISS 400
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+DMY KCG +EKA VF+ + +D + W+AMI GL + G G A+D+F +M A ++ +
Sbjct: 401 LVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPN 460
Query: 162 EVTYVGVLSACTH 174
VT+ VL AC+H
Sbjct: 461 SVTFTNVLCACSH 473
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 56/213 (26%), Positives = 88/213 (41%), Gaps = 53/213 (24%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ ++V Y G + +A + F + +D V W +MI + + N +AL LF +M+
Sbjct: 160 DLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKME 219
Query: 75 TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVE 113
N+ + T V +L+ D+ + A++DMY KCG V+
Sbjct: 220 RENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVD 279
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM-------------------- 153
AQ++F +M +D F+WT M+ G A G D A +F+ M
Sbjct: 280 DAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGK 339
Query: 154 ------------LRASIRLDEVTYVGVLSACTH 174
L + DEVT V LSAC
Sbjct: 340 PKEALAIFNELQLSKIAKPDEVTLVSTLSACAQ 372
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 22/163 (13%)
Query: 32 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM------------------ 73
+D AR F Q+P+ + W +I Y + ++ +F ++
Sbjct: 75 LDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIK 134
Query: 74 QTSNIRRDEFTT----VRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT 129
S ++ T + I +F D+++ +L+ Y CGD+ A+R+F + KD +
Sbjct: 135 AASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVS 194
Query: 130 WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
W +MI A + AL++F +M R ++ + VT VGVLSAC
Sbjct: 195 WNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSAC 237
>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 68/187 (36%), Positives = 100/187 (53%), Gaps = 21/187 (11%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 67
F + + DV+ T ++ G VD AR+ F MP+RD+V W AM+ GY+RV R REAL
Sbjct: 182 FAEIVSPDVVCVTAMLGALSAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREAL 241
Query: 68 TLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMY 106
LF EMQ + + E T V +LT + +G AL+DMY
Sbjct: 242 GLFDEMQKAGVAVSEVTLVSVLTACAQMGALERGMWVHSYVCSRGMRVSVTLGTALVDMY 301
Query: 107 CKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYV 166
KCG V + VF M ++ +TWT+ + GLA++G G+ L++F +M A + + VT+V
Sbjct: 302 SKCGVVTMSMEVFETMRERNIYTWTSALSGLAMNGMGEECLELFKRMESAGMEPNGVTFV 361
Query: 167 GVLSACT 173
VL C+
Sbjct: 362 AVLRGCS 368
>gi|357131180|ref|XP_003567218.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Brachypodium distachyon]
Length = 474
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 106/190 (55%), Gaps = 22/190 (11%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 67
F M K+V+SW +++G+ RG+++ AR F +MP R+ V WT +IDGY R EA+
Sbjct: 152 FDEMPVKNVVSWNVMITGFAGRGEIEYARLLFERMPSRNVVSWTGLIDGYTRSCHSVEAV 211
Query: 68 TLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMY 106
L R M I E T + ++ ++ DI VG +LID+Y
Sbjct: 212 ALLRRMMAEGISPTEITVLAVVPAISDIGRILMGETLHGYCEKNGLVLDIRVGNSLIDLY 271
Query: 107 CKCGDVEKAQRVFWKML-RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
K G ++ + +VF ML R++ +WT++I G A+ G A+++F++M R+ IR + VT+
Sbjct: 272 AKIGSIQSSLKVFHGMLNRRNLVSWTSIISGFAMHGLSTEAVELFAEMRRSGIRPNRVTF 331
Query: 166 VGVLSACTHN 175
+ VL+AC+H
Sbjct: 332 LSVLNACSHG 341
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 58/141 (41%), Gaps = 26/141 (18%)
Query: 34 IARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFT---TVR--- 87
+A Q F + P W A++ Y +EAL LFR+ N+ D + ++R
Sbjct: 51 VAHQVFDRRP----TPWHALLKAYSHGPFPQEALNLFRDAH-RNMADDTYAFMFSLRACA 105
Query: 88 ---------------ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA 132
I F +V +LI+ Y CG + A+ F +M K+ +W
Sbjct: 106 GLAWPWTGAQLHGLVIRKGFEFHAYVHTSLINTYVVCGCLVDARMAFDEMPVKNVVSWNV 165
Query: 133 MIVGLAISGHGDTALDMFSQM 153
MI G A G + A +F +M
Sbjct: 166 MITGFAGRGEIEYARLLFERM 186
>gi|224120036|ref|XP_002318226.1| predicted protein [Populus trichocarpa]
gi|222858899|gb|EEE96446.1| predicted protein [Populus trichocarpa]
Length = 501
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 104/188 (55%), Gaps = 20/188 (10%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M K+VISWT+++ Y + ++ AR +F MP+R+ V W +MI Y + +F E+
Sbjct: 184 LFEKMPEKNVISWTSMIGAYADTDDLETARSFFETMPQRNVVSWNSMISSYAKHGKFVES 243
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNN--------------------DIFVGIALIDMY 106
L LF +MQ+ + D +T V +L+ +N ++ VG AL +MY
Sbjct: 244 LNLFVQMQSEGVTPDGYTFVSVLSACSNLGDLEFGKYIHYLSGDLSQSEVMVGTALTEMY 303
Query: 107 CKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYV 166
+CGDV+KA VF K+ ++D F W +I LA+ G + A+ +F M + ++ ++ T+
Sbjct: 304 AQCGDVDKAFAVFIKIGKRDVFCWNVIIKALALHGRSEEAIKIFLLMRKTGLKPNDFTFT 363
Query: 167 GVLSACTH 174
L AC+H
Sbjct: 364 SALFACSH 371
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 18/174 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ +A +IF +M + V W ++ Y+N G V AR+ F MPERD V W +MI GY +
Sbjct: 116 LDYARKIFDDMCVRPVELWNQMIGKYVNIGDVKSARELFDIMPERDIVSWNSMILGYAKG 175
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
+ A LF +M N + ++I Y D+E A+ F
Sbjct: 176 GKVANARGLFEKMPEKN------------------VISWTSMIGAYADTDDLETARSFFE 217
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
M +++ +W +MI A G +L++F QM + D T+V VLSAC++
Sbjct: 218 TMPQRNVVSWNSMISSYAKHGKFVESLNLFVQMQSEGVTPDGYTFVSVLSACSN 271
>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like, partial [Vitis vinifera]
Length = 599
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 105/195 (53%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ A ++F + V++WT +++G++ G++++A +YF +MP ++ V W AMI GY+
Sbjct: 146 LDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIEN 205
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVG 99
+ L LF+ M S R + + +L +N +I G
Sbjct: 206 CQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAG 265
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
+L+ MYCKCGD+E A ++F M +KD TW AMI G A G G+ AL +F +M ++
Sbjct: 266 TSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMK 325
Query: 160 LDEVTYVGVLSACTH 174
D +T+V VLSAC H
Sbjct: 326 PDWITFVAVLSACNH 340
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 67
F M KD SW T++SG+ G +D AR+ F MP R+ V W AMI GY+ A
Sbjct: 91 FDQMPVKDTASWNTMISGFSQNGMMDQARELFLVMPVRNSVSWNAMISGYVESGDLDLAK 150
Query: 68 TLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDK 127
LF E VR + + A+I + K G +E A++ F +M K+
Sbjct: 151 QLF-----------EVAPVRSVVAWT-------AMITGFMKFGKIELAEKYFEEMPMKNL 192
Query: 128 FTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
TW AMI G + + L +F +M+ + R + + VL C++
Sbjct: 193 VTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSN 239
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 14 KDVISW-----TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALT 68
K +SW T+++S Y G ++ A + F MP++D V W AMI GY + +AL
Sbjct: 255 KSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALY 314
Query: 69 LFREMQTSNIRRDEFTTVRILTTFNNDIFVGIAL 102
LF +M+ ++ D T V +L+ N+ FV + +
Sbjct: 315 LFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGI 348
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 19/140 (13%)
Query: 12 KNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYL-RVNRFREALTLF 70
K+ +VIS +++ +I G ++ A + F M + V W +M+ GY R + + A LF
Sbjct: 1 KSSNVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLF 60
Query: 71 REMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTW 130
+ DIF ++ Y DVE A+ F +M KD +W
Sbjct: 61 DRIPEP------------------DIFSYNIMLACYLHNADVESARLFFDQMPVKDTASW 102
Query: 131 TAMIVGLAISGHGDTALDMF 150
MI G + +G D A ++F
Sbjct: 103 NTMISGFSQNGMMDQARELF 122
>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
Length = 693
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 68/188 (36%), Positives = 107/188 (56%), Gaps = 23/188 (12%)
Query: 9 GNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALT 68
G ++N++++ T ++ Y G++ AR+ F M RD V W+AMI GY + ++ REAL
Sbjct: 250 GLVRNRNLM--TALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALA 307
Query: 69 LFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYC 107
LF EMQ + + ++ T V +L+ + I +G AL+D Y
Sbjct: 308 LFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYA 367
Query: 108 KCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVG 167
KCG ++ A F M K+ +TWTA+I G+A +G G AL++FS M +ASI +VT++G
Sbjct: 368 KCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIG 427
Query: 168 VLSACTHN 175
VL AC+H+
Sbjct: 428 VLMACSHS 435
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 58/185 (31%), Positives = 91/185 (49%), Gaps = 23/185 (12%)
Query: 9 GNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALT 68
G M ++ V+S +++ Y + V A+ F + E V+W A+I Y++ + E +
Sbjct: 149 GLMADRFVLS--SLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVE 206
Query: 69 LFREMQTSNIRRDEFTTVRILTTFN--NDIFVG-------------------IALIDMYC 107
+F+ M + DE T V ++T D +G ALIDMY
Sbjct: 207 MFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYA 266
Query: 108 KCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVG 167
KCG++ KA+R+F M +D W+AMI G + AL +FS+M A + ++VT V
Sbjct: 267 KCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVS 326
Query: 168 VLSAC 172
VLSAC
Sbjct: 327 VLSAC 331
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 16 VISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 75
+I T +V Y G +D A + F MP ++ WTA+I G R REAL LF M+
Sbjct: 356 IILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRK 415
Query: 76 SNIRRDEFTTVRILTTFNNDIFV 98
++I + T + +L ++ V
Sbjct: 416 ASIEPTDVTFIGVLMACSHSCLV 438
>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
Length = 684
Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats.
Identities = 74/198 (37%), Positives = 104/198 (52%), Gaps = 27/198 (13%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M ++V+S T++VSGY V AR F++M +R+ V W A+I GY +
Sbjct: 303 ARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGEN 362
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------------DI 96
EAL LFR ++ +I +T +L+ N DI
Sbjct: 363 EEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDI 422
Query: 97 FVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156
FVG +LIDMY KCG +E RVF KM +D +W A+IVG A +G+G AL +F +ML
Sbjct: 423 FVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVC 482
Query: 157 SIRLDEVTYVGVLSACTH 174
+ D VT +GVL AC+H
Sbjct: 483 GEKPDHVTMIGVLCACSH 500
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 58/190 (30%), Positives = 98/190 (51%), Gaps = 21/190 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M ++ +W +++S G +D A + F MPE D W +M+ G+ + +RF
Sbjct: 69 ARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRF 128
Query: 64 REALTLFREMQTSNIRRDEF------------------TTVRILTT---FNNDIFVGIAL 102
E+L F +M + +E+ T V L + ++ D+++G AL
Sbjct: 129 EESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSAL 188
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG V A+ VF M+ ++ TW ++I +G AL++F +M+ + + DE
Sbjct: 189 IDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDE 248
Query: 163 VTYVGVLSAC 172
VT V+SAC
Sbjct: 249 VTLASVVSAC 258
Score = 79.0 bits (193), Expect = 8e-13, Method: Composition-based stats.
Identities = 56/213 (26%), Positives = 88/213 (41%), Gaps = 53/213 (24%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV + ++ Y G V A + F+ M ER+ V W ++I Y + EAL +F M
Sbjct: 181 DVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMM 240
Query: 75 TSNIRRDEFTTVRILTT----------------------FNNDIFVGIALIDMYCKCGDV 112
S + DE T +++ F +D+ +G AL+DMY KC V
Sbjct: 241 DSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKV 300
Query: 113 EKAQRV-------------------------------FWKMLRKDKFTWTAMIVGLAISG 141
+A+RV F KM +++ +W A+I G +G
Sbjct: 301 NEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNG 360
Query: 142 HGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+ AL +F + R SI T+ +LSAC +
Sbjct: 361 ENEEALRLFRLLKRESIWPTHYTFGNLLSACAN 393
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 73 MQTSNIRRDEFTTVRILTT-FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWT 131
+++ + R RIL T F+ +IF+ LID+Y KC ++ A+++F +M +++ FTW
Sbjct: 26 LRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWN 85
Query: 132 AMIVGLAISGHGDTALDMFSQM 153
++I L SG D A +F M
Sbjct: 86 SLISVLTKSGFLDEAARLFGSM 107
>gi|356514477|ref|XP_003525932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 526
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 98/189 (51%), Gaps = 21/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F KDV+ T +V GY G V AR+ F +MPER+ V W+AM+ Y RV+ F+E
Sbjct: 167 LFDETSYKDVVLGTAMVDGYGKMGNVKSAREVFDKMPERNAVSWSAMMAAYSRVSDFKEV 226
Query: 67 LTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDM 105
L LF EMQ +E V +LT ++ + AL+DM
Sbjct: 227 LALFTEMQNEGTEPNESILVTVLTACAHLGALTQGLWVHSYARRFHLESNPILATALVDM 286
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y KCG VE A VF ++ KD W AMI G A++G +L +F QM + + +E T+
Sbjct: 287 YSKCGCVESALSVFDCIVDKDAGAWNAMISGEALNGDAGKSLQLFRQMAASRTKPNETTF 346
Query: 166 VGVLSACTH 174
V VL+ACTH
Sbjct: 347 VAVLTACTH 355
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/196 (19%), Positives = 69/196 (35%), Gaps = 56/196 (28%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT--- 91
AR F + R+ + MI GYL+ A++ + M + + + +T ++
Sbjct: 59 ARSIFRHLTNRNTFMHNTMIRGYLQCRSPLHAVSCYLSMLQNGVAVNNYTFPPLIKACIA 118
Query: 92 ----------------------FNNDIFVG------------------------------ 99
ND +V
Sbjct: 119 LLPSSPSNIVGRLVHGHVVKFGLRNDPYVVSAFIEFYSVSREVDTARVLFDETSYKDVVL 178
Query: 100 -IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
A++D Y K G+V+ A+ VF KM ++ +W+AM+ + L +F++M
Sbjct: 179 GTAMVDGYGKMGNVKSAREVFDKMPERNAVSWSAMMAAYSRVSDFKEVLALFTEMQNEGT 238
Query: 159 RLDEVTYVGVLSACTH 174
+E V VL+AC H
Sbjct: 239 EPNESILVTVLTACAH 254
>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
Length = 569
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 102/192 (53%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
AL++F K V++WT +++GY+ G++ +A + F +MPE++ V W AMI GY+ +R
Sbjct: 119 ALKLFEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRA 178
Query: 64 REALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIAL 102
+ + LFR M I+ + T L + +D G +L
Sbjct: 179 EDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSL 238
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I MYCKCG +E ++F ++ R+D TW AMI G A G G AL +F +M+ ++ D
Sbjct: 239 ISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDW 298
Query: 163 VTYVGVLSACTH 174
+T+V VL AC H
Sbjct: 299 ITFVAVLMACNH 310
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 78/173 (45%), Gaps = 18/173 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A F +M KD SW T+++G+ Q+D AR F MP ++ V W AMI GY+
Sbjct: 54 MERAQAFFEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTKNVVTWNAMISGYVEC 113
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
AL LF + F +V T A+I Y K G + A+R+F
Sbjct: 114 GDLDSALKLF--------EKAPFKSVVAWT----------AMITGYMKLGRIGLAERLFE 155
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
KM K+ TW AMI G + + + +F M+ I+ + T L C+
Sbjct: 156 KMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCS 208
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 12/158 (7%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D + T+++S Y G ++ + F Q+P RD V W AMI GY + ++AL LF EM
Sbjct: 231 DTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMI 290
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
++ D T V +L N+ F + + + D + + + D +T +
Sbjct: 291 EKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKD-------YGLVAKPDHYTCMVDL 343
Query: 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+G A G A+D+ +M + + +L AC
Sbjct: 344 LGRA--GKLVEAVDLIEKM---PFKPHAAVFGTLLGAC 376
>gi|125554650|gb|EAZ00256.1| hypothetical protein OsI_22267 [Oryza sativa Indica Group]
Length = 602
Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats.
Identities = 68/181 (37%), Positives = 95/181 (52%), Gaps = 21/181 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV+SWTT+V G G VD AR+ F MP R+ V W +MI GY++ +RF +AL +F EM+
Sbjct: 163 DVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMR 222
Query: 75 TSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVE 113
+ + F L D + A++DMYCKCG V+
Sbjct: 223 ALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVD 282
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+A RVF + + TW MI G A+ G D AL++F QM A + D+VT + VL+AC
Sbjct: 283 EAWRVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACA 342
Query: 174 H 174
H
Sbjct: 343 H 343
>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 763
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 101/196 (51%), Gaps = 21/196 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A E+F M +++ SW T+++GY G + AR+ F MP+RD V W A+I GY +
Sbjct: 310 MVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQN 369
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
+ EAL +F EM+ + T L+T F FVG
Sbjct: 370 GHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVG 429
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+ MY KCG ++A VF + KD +W MI G A G G AL +F M +A ++
Sbjct: 430 NALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVK 489
Query: 160 LDEVTYVGVLSACTHN 175
DE+T VGVLSAC+H+
Sbjct: 490 PDEITMVGVLSACSHS 505
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 94/190 (49%), Gaps = 21/190 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A ++F M +DVISW T++SGY G + A++ F + P RD WTAM+ GY++
Sbjct: 217 LGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQN 276
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTF--------NNDIFVGIA---------LI 103
EA F EM N E + +L + ++F + +I
Sbjct: 277 GMVDEARKYFDEMPVKN----EISYNAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMI 332
Query: 104 DMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEV 163
Y + G + +A+++F M ++D +W A+I G A +GH + AL+MF +M R +
Sbjct: 333 TGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRS 392
Query: 164 TYVGVLSACT 173
T+ LS C
Sbjct: 393 TFSCALSTCA 402
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 91/186 (48%), Gaps = 21/186 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A ++F M KDV+SW ++SGY G VD AR+ F +MP R+ + W ++ Y+
Sbjct: 124 LGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHN 183
Query: 61 NRFREALTLFREMQT-----------SNIRRDEFTTVRILTTFN----NDIFVGIALIDM 105
R +EA LF ++R+ R L F+ D+ +I
Sbjct: 184 GRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQL--FDRMPVRDVISWNTMISG 241
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y + GD+ +A+R+F + +D FTWTAM+ G +G D A F +M +E++Y
Sbjct: 242 YAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVK----NEISY 297
Query: 166 VGVLSA 171
+L+
Sbjct: 298 NAMLAG 303
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 22/164 (13%)
Query: 12 KNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFR 71
K+ D+++W +S ++ G D A + F MP R V + AMI GYLR +F A LF
Sbjct: 42 KDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFD 101
Query: 72 EMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWT 131
+M RD F+ +LT + + +G +A ++F M +KD +W
Sbjct: 102 KMP----ERDLFSWNVMLTGYVRNRRLG--------------EAHKLFDLMPKKDVVSWN 143
Query: 132 AMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
AM+ G A +G D A ++F++M + +++ G+L+A HN
Sbjct: 144 AMLSGYAQNGFVDEAREVFNKMPHR----NSISWNGLLAAYVHN 183
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 18/147 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
AL +F +M + +S+ ++SGY+ + +AR F +MPERD W M+ GY+R R
Sbjct: 65 ALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMPERDLFSWNVMLTGYVRNRRL 124
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
EA LF M ++ ++N A++ Y + G V++A+ VF KM
Sbjct: 125 GEAHKLFDLMPKKDV-----------VSWN-------AMLSGYAQNGFVDEAREVFNKMP 166
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMF 150
++ +W ++ +G A +F
Sbjct: 167 HRNSISWNGLLAAYVHNGRLKEARRLF 193
>gi|413925046|gb|AFW64978.1| hypothetical protein ZEAMMB73_457124 [Zea mays]
Length = 592
Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats.
Identities = 62/177 (35%), Positives = 107/177 (60%), Gaps = 22/177 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
++++S Y G V+ AR+ F M ER+ V WT+MI GY ++ +F++A+ LFR+MQ + ++
Sbjct: 99 SSLISMYAKCGLVEDARKVFHGMHERNVVCWTSMISGYTQLGKFKKAVDLFRDMQITGMK 158
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
D+ T ++++ ++ V +LIDMY KCGD+ KA +
Sbjct: 159 ADDGTIATVVSSCAQMGALDLGRYVHAYCDVHGLGKELSVKNSLIDMYSKCGDITKAHEI 218
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML-RASIRLDEVTYVGVLSACTH 174
F + ++D F+WTAMI+G ++G + ALD+F+QM + +EVT++GVL++C+H
Sbjct: 219 FCGLTKRDVFSWTAMIMGFTVNGLCNEALDLFAQMEGEGKVMPNEVTFLGVLTSCSH 275
Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 49/163 (30%), Positives = 72/163 (44%), Gaps = 23/163 (14%)
Query: 35 ARQYFAQMPER--DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTF 92
ARQ P+ D V W +I GYLR +AL F +M +R D+ T + L
Sbjct: 11 ARQVLDSAPQGACDTVSWNTIISGYLRCGMPNKALQAFGQMVKEPVRLDDVTLLNALVAS 70
Query: 93 NN---------------------DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWT 131
+ ++G +LI MY KCG VE A++VF M ++ WT
Sbjct: 71 AKAGKAKVGRLCHSLVVVNGAGINCYMGSSLISMYAKCGLVEDARKVFHGMHERNVVCWT 130
Query: 132 AMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+MI G G A+D+F M ++ D+ T V+S+C
Sbjct: 131 SMISGYTQLGKFKKAVDLFRDMQITGMKADDGTIATVVSSCAQ 173
>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 632
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 112/193 (58%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +DV+SW T++SGY G VD AR F M E++ V W+ MI GY R ++
Sbjct: 181 AQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKY 240
Query: 64 REALTLFREMQ-TSNIRRDEFTTVRILTTFNN---------------------DIFVGIA 101
+A+ LFR+MQ + ++ T V +L+ + +F+G A
Sbjct: 241 ADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNA 300
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L DMY KCG V +A+ VF +M +D +W+ +I+GLA+ G+ + A + F++M+ + +
Sbjct: 301 LADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPN 360
Query: 162 EVTYVGVLSACTH 174
+++++G+L+ACTH
Sbjct: 361 DISFMGLLTACTH 373
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 32/113 (28%)
Query: 94 NDIFVGIALIDMY----CKC---------------------------GDVEKAQRVFWKM 122
+++FV +L+D+Y C C G V+KA+ VF M
Sbjct: 160 SNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGM 219
Query: 123 LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR-ASIRLDEVTYVGVLSACTH 174
+ K+ +W+ MI G A + A+++F QM + ++VT V VLSAC H
Sbjct: 220 MEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAH 272
>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 663
Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats.
Identities = 66/193 (34%), Positives = 111/193 (57%), Gaps = 21/193 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M +KDV+SWT +++ Y N G +D A ++F QMP ++ V W ++I +++ +
Sbjct: 289 AKSVFDQMLDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLY 348
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT-----------------FNNDIFVGI----AL 102
EA+ LF M S + ++ T V IL++ F+N+I + A+
Sbjct: 349 AEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAI 408
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG ++ A VF+ M K+ +W +I LA+ G+G A++MF +M + + DE
Sbjct: 409 IDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDE 468
Query: 163 VTYVGVLSACTHN 175
+T+ G+LSAC+H+
Sbjct: 469 ITFTGLLSACSHS 481
Score = 95.5 bits (236), Expect = 8e-18, Method: Composition-based stats.
Identities = 57/153 (37%), Positives = 80/153 (52%), Gaps = 21/153 (13%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
I++ Y+ G + AR+ F + ER V W +MI+GY ++ R EA+ +FREMQ + D
Sbjct: 175 ILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPD 234
Query: 82 EFTTVRIL---------------------TTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
FT V +L T D V AL+DMY KCG+++ A+ VF
Sbjct: 235 VFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFD 294
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+ML KD +WT MI A G D AL+ F+QM
Sbjct: 295 QMLDKDVVSWTCMINAYANHGLIDCALEFFNQM 327
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 43/179 (24%), Positives = 79/179 (44%), Gaps = 21/179 (11%)
Query: 16 VISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 75
V++ +VS + + A + F Q+P+ + ++ +I GY + ++L L+R M
Sbjct: 68 VLTLGKLVSSSVQLRDLRYAHKLFDQIPQPNKFMFNHLIKGYSNSSDPIKSLLLYRRMVC 127
Query: 76 SNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEK 114
I ++FT +L + V A++++Y CG +
Sbjct: 128 DGILPNQFTIPFVLKACAAKSCYWLGVCVHAQSFKLGMGSHACVQNAILNIYVACGLITS 187
Query: 115 AQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
A+RVF + + +W +MI G + G + A+ MF +M + D T VG+LS T
Sbjct: 188 ARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVST 246
>gi|449521058|ref|XP_004167548.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 376
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 96/177 (54%), Gaps = 21/177 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T++V+ Y ++ AR+ F +MP R+ V WTAMI G+ RV EA+ LFREMQ + I+
Sbjct: 131 TSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQ 190
Query: 80 RDEFTTVRILTTFN---------------------NDIFVGIALIDMYCKCGDVEKAQRV 118
D T V +++ D+ + AL+DMY KCG +E+A++V
Sbjct: 191 PDAMTLVSVVSACAVAGALDIGCWLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQV 250
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
F M KD W++MI+G A G A+D F QML + D VT++ VLSAC H
Sbjct: 251 FVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHVTFLAVLSACAHG 307
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 87/167 (52%), Gaps = 23/167 (13%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF-REALTLFREM-QTSNIRRDEFTTVR 87
G ++ AR FAQ+P + W ++I GY +++ +E + LF+++ +T + FT
Sbjct: 38 GNINYARSVFAQIPHPNIFSWNSLIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAF 97
Query: 88 ILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKD 126
+L F + +FV +L++ Y KC ++ A++VF +M ++
Sbjct: 98 VLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRN 157
Query: 127 KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
WTAMI G A G D A+++F +M +A I+ D +T V V+SAC
Sbjct: 158 LVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSACA 204
>gi|224094065|ref|XP_002310070.1| predicted protein [Populus trichocarpa]
gi|222852973|gb|EEE90520.1| predicted protein [Populus trichocarpa]
Length = 438
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 109/196 (55%), Gaps = 23/196 (11%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
+A ++F K+++SW ++V GY G +D+AR F MPERD W+ +IDGY +
Sbjct: 63 YARKVFDGTPVKNLVSWNSMVDGYAKCGYLDLARGLFDLMPERDVRSWSCLIDGYAKSGN 122
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIA 101
+ +A+ +F +M+TS + +E T V +L F ++ + +
Sbjct: 123 YGDAMAVFEKMRTSGPKANEVTMVSVLCACAHLGALDKGRMMHQYLVDNGFELNLVLRTS 182
Query: 102 LIDMYCKCGDVEKAQRVFWKM-LRK-DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
LIDMY KCG VE+A VF + LRK D W AMI GLA G +LD++++M A I+
Sbjct: 183 LIDMYAKCGAVEEAFAVFRGVSLRKSDVLIWNAMIGGLATHGLVKESLDLYTEMQIAGIK 242
Query: 160 LDEVTYVGVLSACTHN 175
DE+T++ +LSAC H
Sbjct: 243 PDEITFLCLLSACAHG 258
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 65/153 (42%), Gaps = 36/153 (23%)
Query: 58 LRVNRFREALTL-FREMQTSNIRRDEFTTV----RILTTFNNDIFVGIALIDMYCKCGDV 112
L+V + + LT F TS + R E I + F D FV +LI MY CGD+
Sbjct: 2 LQVGIYPDHLTYPFLAKATSRLLRKELGVSIHGHVIKSGFEIDRFVANSLIHMYGSCGDI 61
Query: 113 EKAQRVF----------WK---------------------MLRKDKFTWTAMIVGLAISG 141
A++VF W M +D +W+ +I G A SG
Sbjct: 62 VYARKVFDGTPVKNLVSWNSMVDGYAKCGYLDLARGLFDLMPERDVRSWSCLIDGYAKSG 121
Query: 142 HGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+ A+ +F +M + + +EVT V VL AC H
Sbjct: 122 NYGDAMAVFEKMRTSGPKANEVTMVSVLCACAH 154
>gi|218189594|gb|EEC72021.1| hypothetical protein OsI_04901 [Oryza sativa Indica Group]
Length = 589
Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 67/192 (34%), Positives = 105/192 (54%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F M ++D++ W +++ GY G++D AR F +MPER+ + W+ +IDGY+R
Sbjct: 232 ARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEP 291
Query: 64 REALTLFREMQTSNIRRDEFTTV---------------RILTTFNN------DIFVGIAL 102
EAL F+ M + I+ D V R L ++ D+ V AL
Sbjct: 292 NEALEFFQRMLSCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTAL 351
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG ++ A+ +F M +K TW MIVGL G+G A+ +F+QM +D+
Sbjct: 352 IDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDD 411
Query: 163 VTYVGVLSACTH 174
++ + VL++CTH
Sbjct: 412 LSVLAVLTSCTH 423
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 46/152 (30%), Positives = 80/152 (52%), Gaps = 25/152 (16%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR----VNRFREALTL 69
+D++SW ++V+GY+ G+VD+A+ F +M +RD W MIDGY V+R RE L
Sbjct: 179 RDLVSWNSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARE---L 235
Query: 70 FREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT 129
F +M + D+ ++ID Y + G +++A+ +F +M ++ +
Sbjct: 236 FDQMP------------------DRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVIS 277
Query: 130 WTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
W+ +I G G + AL+ F +ML I+ D
Sbjct: 278 WSIVIDGYVRFGEPNEALEFFQRMLSCGIKPD 309
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 46/122 (37%), Positives = 61/122 (50%), Gaps = 19/122 (15%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINR-GQVDIARQYFAQMPERDYVLWTAMIDGYLRVN 61
A ++F M+ +D SW T++ GY G VD AR+ F QMP+RD V W +MIDGY R
Sbjct: 199 LAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRDLVCWNSMIDGYARHG 258
Query: 62 RFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWK 121
R EA LF EM N+ I I +ID Y + G+ +A F +
Sbjct: 259 RMDEARVLFEEMPERNV-----------------ISWSI-VIDGYVRFGEPNEALEFFQR 300
Query: 122 ML 123
ML
Sbjct: 301 ML 302
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
+ T + D+F ALI YC+ GD ++VF +R D +W +M+ G G D A
Sbjct: 143 VRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHGVR-DLVSWNSMVAGYVGCGEVDLAQ 201
Query: 148 DMFSQM 153
D+F +M
Sbjct: 202 DLFDEM 207
>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
Length = 845
Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 109/192 (56%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M NK +SW ++++G++ G ++ A + F+ MP+ D V W MI ++ + F
Sbjct: 395 ACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMF 454
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
+EA+ LFR MQ+ I D+ T V + + + D+ +G AL
Sbjct: 455 KEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTAL 514
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DM+ +CGD + A +VF KM+++D WTA I +A+ G+G A+++F +ML+ I+ D
Sbjct: 515 VDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDG 574
Query: 163 VTYVGVLSACTH 174
V +V +L+A +H
Sbjct: 575 VVFVALLTALSH 586
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 91/181 (50%), Gaps = 21/181 (11%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
+D+ +++ Y G++D R+ F +M ER+ V WT++I GY + ++EA++LF EM
Sbjct: 172 RDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEM 231
Query: 74 QTSNIRRDEFTTVRILTTFN--NDIFVGI-------------------ALIDMYCKCGDV 112
IR + T V +++ D+ +G AL+DMY KCG +
Sbjct: 232 VEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAI 291
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+KA+++F + + K+ + ++ G L + +ML+ R D +T + +SAC
Sbjct: 292 DKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSAC 351
Query: 173 T 173
+
Sbjct: 352 S 352
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 52/205 (25%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+V Y+ G +D AR+ F + +++ VL+ ++ Y+R RE L + EM R
Sbjct: 279 NALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPR 338
Query: 80 RDEFTTVRILTTFN--NDIFVGI-------------------ALIDMYCKCGDVEKAQRV 118
D T + ++ + +D+ G A+I+MY KCG E A RV
Sbjct: 339 PDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRV 398
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS--------------------QMLRASI 158
F +ML K + +W ++I G +G ++A +FS M + +I
Sbjct: 399 FDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAI 458
Query: 159 RL-----------DEVTYVGVLSAC 172
L D+VT VGV SAC
Sbjct: 459 ELFRVMQSEGITADKVTMVGVASAC 483
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 92/197 (46%), Gaps = 29/197 (14%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRG---QVDIARQYFAQMPERD-----YVLWTAMIDGY 57
+I N N +S T ++S G ++ A++ E + + +++++I G+
Sbjct: 55 QITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNGIMGTHYMFSSLIRGF 114
Query: 58 LRVNRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDI 96
+A+ +FR++ D FT +L+ F D+
Sbjct: 115 SACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVKMGFERDM 174
Query: 97 FVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156
FV +LI Y +CG+++ +RVF KM ++ +WT++I G A G A+ +F +M+
Sbjct: 175 FVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEV 234
Query: 157 SIRLDEVTYVGVLSACT 173
IR + VT VGV+SAC
Sbjct: 235 GIRPNSVTMVGVISACA 251
>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 624
Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 68/182 (37%), Positives = 104/182 (57%), Gaps = 22/182 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV ++++ Y GQ++ AR+ F ++P R+ V WT+MI GY + + F+EA+ LFREMQ
Sbjct: 265 DVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQ 324
Query: 75 TSNIRRDEFTTVRILT---------------------TFNNDIFVGIALIDMYCKCGDVE 113
D T +L+ + D+ ALI MY KCGD++
Sbjct: 325 IGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQ 384
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM-LRASIRLDEVTYVGVLSAC 172
KA +F + + D F+W+A+I GLA++G D AL +FSQM + + IR +E+T++GVL AC
Sbjct: 385 KALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCAC 444
Query: 173 TH 174
H
Sbjct: 445 NH 446
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 63/184 (34%), Positives = 92/184 (50%), Gaps = 24/184 (13%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALTLFRE 72
DV ++S + + G V+ AR F +P RD V W +MI GYL+ +R+ AL +F E
Sbjct: 161 DVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFWE 220
Query: 73 M-QTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCG 110
+ ++ DE T V L+ F D+FVG +LIDMY KCG
Sbjct: 221 LLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCG 280
Query: 111 DVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLS 170
+E A++VF ++ ++ WT+MI G A S A+++F +M D T VLS
Sbjct: 281 QIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLS 340
Query: 171 ACTH 174
AC H
Sbjct: 341 ACGH 344
Score = 38.9 bits (89), Expect = 0.79, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQM 42
ALEIF + D+ SW+ ++SG G+ D A F+QM
Sbjct: 386 ALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQM 424
>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 620
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 101/189 (53%), Gaps = 21/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F + D +SW +++ GY+ G++DIA F +M E++ + WT MI GY++ + +EA
Sbjct: 172 LFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEA 231
Query: 67 LTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIALIDM 105
L LF EMQ S++ D + L T D +G LIDM
Sbjct: 232 LQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDM 291
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y KCG++E+A VF + +K WTA+I G A GHG A+ F +M + I+ + +T+
Sbjct: 292 YAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITF 351
Query: 166 VGVLSACTH 174
VL+AC++
Sbjct: 352 TAVLTACSY 360
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 21/129 (16%)
Query: 46 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT-------------- 91
D LW MI G+ + +L L++ M S+ + +T +L
Sbjct: 79 DTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIH 138
Query: 92 -------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGD 144
+ ND++ +LI+ Y G+ + A +F ++ D +W ++I G +G D
Sbjct: 139 AQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMD 198
Query: 145 TALDMFSQM 153
AL +F +M
Sbjct: 199 IALTLFRKM 207
>gi|224126363|ref|XP_002329535.1| predicted protein [Populus trichocarpa]
gi|222870244|gb|EEF07375.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats.
Identities = 71/227 (31%), Positives = 106/227 (46%), Gaps = 52/227 (22%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDG---- 56
+G A EIF M +D+ +W +++SGY+ G ++ AR F +MP RD V W MIDG
Sbjct: 240 LGLAREIFDEMYERDIFTWNSMISGYVGVGDMEAARGLFDKMPSRDVVSWNCMIDGFARI 299
Query: 57 ---------------------------YLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
YLR ++ + L F M + DE + V +L
Sbjct: 300 KDVSMAAKFFDEMPLRNVVSWNVMLALYLRCKKYSDCLRFFDMMVGGDFVPDEASLVSVL 359
Query: 90 TT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
T D+ + AL+ MY KCG ++ A+ VF KM K
Sbjct: 360 TACAELKMLDQGKWVHSYMKDNGIKPDMLLSTALLTMYAKCGAMDLAREVFDKMPEKSVV 419
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
+W +MI+G I GHGD AL+MF +M + ++ T++ VLSAC+H+
Sbjct: 420 SWNSMIIGYGIHGHGDKALEMFREMEKGGPMPNDATFMSVLSACSHS 466
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 18/166 (10%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F N D++SW +++ GY+ G++ +AR+ F +M ERD W +MI GY+ V A
Sbjct: 215 VFDNGFVLDLVSWNSMIDGYVKNGELGLAREIFDEMYERDIFTWNSMISGYVGVGDMEAA 274
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKD 126
LF +M + R + ++N +ID + + DV A + F +M ++
Sbjct: 275 RGLFDKMPS-----------RDVVSWN-------CMIDGFARIKDVSMAAKFFDEMPLRN 316
Query: 127 KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+W M+ L F M+ DE + V VL+AC
Sbjct: 317 VVSWNVMLALYLRCKKYSDCLRFFDMMVGGDFVPDEASLVSVLTAC 362
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 63/152 (41%), Gaps = 27/152 (17%)
Query: 2 GFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVN 61
GF L++F ++N + + Y G+ AR F D V W +MIDGY++
Sbjct: 188 GFELDLF--VRN-------SFIRFYSVCGRTSDARMVFDNGFVLDLVSWNSMIDGYVKNG 238
Query: 62 RFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWK 121
A +F EM + DIF ++I Y GD+E A+ +F K
Sbjct: 239 ELGLAREIFDEM------------------YERDIFTWNSMISGYVGVGDMEAARGLFDK 280
Query: 122 MLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
M +D +W MI G A A F +M
Sbjct: 281 MPSRDVVSWNCMIDGFARIKDVSMAAKFFDEM 312
Score = 36.6 bits (83), Expect = 3.9, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%)
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
F D+FV + I Y CG A+ VF D +W +MI G +G A ++F
Sbjct: 189 FELDLFVRNSFIRFYSVCGRTSDARMVFDNGFVLDLVSWNSMIDGYVKNGELGLAREIFD 248
Query: 152 QMLRASI 158
+M I
Sbjct: 249 EMYERDI 255
>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
Length = 452
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 106/193 (54%), Gaps = 21/193 (10%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A ++F + +++++ T ++SGY G+V+ AR F QM E+D V W+AMI GY ++
Sbjct: 1 MAQKLFTKISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDK 60
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIA 101
+EAL LF EMQ I+ D+ T + +++ + V A
Sbjct: 61 PQEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNA 120
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMY KCG++ A+ VF KM ++ +WT+MI AI G AL F QM +I+ +
Sbjct: 121 LIDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPN 180
Query: 162 EVTYVGVLSACTH 174
VT+VGVL AC+H
Sbjct: 181 GVTFVGVLYACSH 193
Score = 35.4 bits (80), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 29/46 (63%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERD 46
+G A +F M++++VISWT++++ + G A ++F QM + +
Sbjct: 131 LGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDEN 176
>gi|255553249|ref|XP_002517667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543299|gb|EEF44831.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 628
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 101/195 (51%), Gaps = 27/195 (13%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M ++V+S T++VSGY V AR F +M ER+ V W A+I GY + EA
Sbjct: 310 VFDRMPIRNVVSETSMVSGYAKTASVKAARLLFTKMIERNVVSWNALIAGYTQNGENEEA 369
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNN---------------------------DIFVG 99
L LFR ++ I +T +L N D+FVG
Sbjct: 370 LRLFRMLKREAICPTHYTFGNLLNACANLADLQLGRQAHAHVLKHGFRFQYGEESDVFVG 429
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMY KCG VE+ R+F M+ +D +W AMIVG A +G+G AL +F +ML + +
Sbjct: 430 NALIDMYMKCGSVEEGCRIFENMVERDYVSWNAMIVGYAQNGYGMEALGLFRKMLASGEK 489
Query: 160 LDEVTYVGVLSACTH 174
D VT +G L AC+H
Sbjct: 490 PDHVTMIGALCACSH 504
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 21/191 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +IF M K+V SW IVS + G +D + F MPE D W ++I G+ + +RF
Sbjct: 73 ARKIFDQMPEKNVFSWNAIVSTLVKSGFLDEGARLFVSMPEPDQCSWNSLIAGFAQHDRF 132
Query: 64 REALTLFREMQTSNIRRDEFT---------------------TVRILTTFNNDIFVGIAL 102
EAL F +M +E+T + + + F D+++G AL
Sbjct: 133 EEALNYFVKMHRKGFVLNEYTFGSGLSACAGLKDLKIGTQIHGLMLKSQFLLDVYMGSAL 192
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
ID+Y KCG V+ AQRVF M+ ++ +W ++I +G AL++F +M+ + DE
Sbjct: 193 IDIYSKCGFVDCAQRVFDGMMERNVVSWNSLITCYEQNGPSREALEIFMRMMESGFEPDE 252
Query: 163 VTYVGVLSACT 173
VT V+SAC
Sbjct: 253 VTLASVVSACA 263
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 87/213 (40%), Gaps = 53/213 (24%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV + ++ Y G VD A++ F M ER+ V W ++I Y + REAL +F M
Sbjct: 185 DVYMGSALIDIYSKCGFVDCAQRVFDGMMERNVVSWNSLITCYEQNGPSREALEIFMRMM 244
Query: 75 TSNIRRDEFTTVRILTT----------------------FNNDIFVGIALIDMYCKCG-- 110
S DE T +++ +D+ + AL+DMY KCG
Sbjct: 245 ESGFEPDEVTLASVVSACASLAAAKQGLEIHACVVKRDKLRDDLILSNALVDMYAKCGRI 304
Query: 111 -----------------------------DVEKAQRVFWKMLRKDKFTWTAMIVGLAISG 141
V+ A+ +F KM+ ++ +W A+I G +G
Sbjct: 305 NEARCVFDRMPIRNVVSETSMVSGYAKTASVKAARLLFTKMIERNVVSWNALIAGYTQNG 364
Query: 142 HGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+ AL +F + R +I T+ +L+AC +
Sbjct: 365 ENEEALRLFRMLKREAICPTHYTFGNLLNACAN 397
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 32/133 (24%)
Query: 73 MQTSNIRRDEFTTVRILTT-FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWT 131
+++ ++R RI+ T F ++F+ LID Y KCG + A+++F +M K+ F+W
Sbjct: 30 LKSKSLRDTRRIHARIIKTQFAYEVFIQNRLIDAYGKCGCFDDARKIFDQMPEKNVFSWN 89
Query: 132 AMIVGLAISGHGD-------------------------------TALDMFSQMLRASIRL 160
A++ L SG D AL+ F +M R L
Sbjct: 90 AIVSTLVKSGFLDEGARLFVSMPEPDQCSWNSLIAGFAQHDRFEEALNYFVKMHRKGFVL 149
Query: 161 DEVTYVGVLSACT 173
+E T+ LSAC
Sbjct: 150 NEYTFGSGLSACA 162
>gi|326507168|dbj|BAJ95661.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats.
Identities = 64/177 (36%), Positives = 108/177 (61%), Gaps = 23/177 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
++++S Y GQV+ AR+ F MP+R+ V WT+MI GY ++ + +EA+ LFR+MQ + ++
Sbjct: 235 SSLISMYAKCGQVEDARRIFDGMPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVK 294
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
D+ T ++++ DI V +LIDMY KCGD++KA +
Sbjct: 295 VDDATISTVVSSCGQMGALDLGRYVHAYCDIHGLGKDISVKNSLIDMYSKCGDIKKAYDI 354
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM-LRASIRLDEVTYVGVLSACTH 174
F M+++D F+WT +I+G A +G ALD+F+QM + +E+T++GVL++C+H
Sbjct: 355 FCGMVKRDNFSWT-VIMGFAANGLSGEALDLFAQMEEEGGVMPNEITFLGVLTSCSH 410
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 12/159 (7%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D +SW TI++GYI+ G + A Q F+QM + M+D +N L +
Sbjct: 160 DTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQ-----VMLDDVTLLN------ALVACAR 208
Query: 75 TSNIRRDEFTTVRILTT-FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
T ++ + ++T F + ++G +LI MY KCG VE A+R+F M ++ WT+M
Sbjct: 209 TCMMKVGKLCHALLVTNGFEINCYMGSSLISMYAKCGQVEDARRIFDGMPDRNAVCWTSM 268
Query: 134 IVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
I G G A+ +F M A +++D+ T V+S+C
Sbjct: 269 ISGYTQLGQSKEAIKLFRDMQIAGVKVDDATISTVVSSC 307
>gi|357159954|ref|XP_003578611.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 600
Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats.
Identities = 69/193 (35%), Positives = 101/193 (52%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M ++V+SW+T+VSGY +G +++AR F +MP ++ V WT M+ +
Sbjct: 235 AFKLFQCMPERNVVSWSTVVSGYCKKGDMEMARVIFDKMPTKNLVTWTIMVSACAQNGLV 294
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
EA LF +M+ +++ D V IL V AL
Sbjct: 295 EEAGKLFTQMKEASVELDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNAL 354
Query: 103 IDMYCKCGDVEKAQRVF-WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
IDM+CKCG + +A VF +++ KD +W +I G A+ GHGD ALD F+QM D
Sbjct: 355 IDMFCKCGCINRADYVFDTEIVEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFCPD 414
Query: 162 EVTYVGVLSACTH 174
VT + VLSACTH
Sbjct: 415 AVTMINVLSACTH 427
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 57/172 (33%), Positives = 92/172 (53%), Gaps = 18/172 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +DV+SW + ++ + +G+V+ AR+ F +M E+D V W ++DGY +
Sbjct: 173 ASKVFEEMPRRDVVSWNSAMAAMVRQGEVEGARRMFDEMLEKDTVSWNTLLDGYTKAGDV 232
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
EA LF+ M N+ ++TV + YCK GD+E A+ +F KM
Sbjct: 233 EEAFKLFQCMPERNVV--SWSTV----------------VSGYCKKGDMEMARVIFDKMP 274
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
K+ TWT M+ A +G + A +F+QM AS+ LD V +L+AC +
Sbjct: 275 TKNLVTWTIMVSACAQNGLVEEAGKLFTQMKEASVELDVAAVVSILAACAES 326
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 41/162 (25%), Positives = 67/162 (41%), Gaps = 26/162 (16%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRVNRFREALTLFRE 72
D ++ + ++S Y ++ +R FA P L ++ Y REA+ +F
Sbjct: 55 DPVAASKLLSSYALHRRLPASRGVFASFPNPHATTFLPNTLLRAYALNALPREAVAVFSA 114
Query: 73 MQTSNIRRDEFTTVRILTTFNN--------------------DIFVGIALIDMYCKCGDV 112
M RD FT ++ ++ D +VG ALID Y K G
Sbjct: 115 MP----HRDSFTYSFLIKALSSAGVAPLRAVHSHVVKLGSIEDTYVGNALIDAYSKNGGF 170
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML 154
A +VF +M R+D +W + + + G + A MF +ML
Sbjct: 171 SDASKVFEEMPRRDVVSWNSAMAAMVRQGEVEGARRMFDEML 212
>gi|255581780|ref|XP_002531691.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528667|gb|EEF30682.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 434
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 103/192 (53%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F M +++++SW +++GY+ G +A + F +MPE++ + W +M+ GY RF
Sbjct: 223 ARELFDKMPSRNLVSWNAMINGYMKAGDFVLASELFDKMPEKNLISWNSMVAGYDLNERF 282
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
+EAL LF M + + T V + F D + +L
Sbjct: 283 KEALDLFLTMLERDFTPNHATLVSTFSAVSGLASLSTGKWMHSYMVKNGFQLDGVLATSL 342
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I+MY KCG++E A VF + +K WTA+IVGL + G D AL+ F +M R +R
Sbjct: 343 INMYSKCGNIESALSVFQLITKKKLGHWTAIIVGLGMHGMADNALEFFHEMCRTGMRPHA 402
Query: 163 VTYVGVLSACTH 174
+T++GVL+AC+H
Sbjct: 403 ITFIGVLNACSH 414
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 88/170 (51%), Gaps = 18/170 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F +M +KD++SW +++ GY+ GQV++ + F +MPERD WT +IDG+ + +
Sbjct: 161 AKKVFLSMDDKDLVSWNSLIDGYVKCGQVELGMKLFEEMPERDLFSWTVLIDGFSKCGKV 220
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
A LF +M + N L ++N A+I+ Y K GD A +F KM
Sbjct: 221 DVARELFDKMPSRN-----------LVSWN-------AMINGYMKAGDFVLASELFDKMP 262
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
K+ +W +M+ G ++ ALD+F ML + T V SA +
Sbjct: 263 EKNLISWNSMVAGYDLNERFKEALDLFLTMLERDFTPNHATLVSTFSAVS 312
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 22/136 (16%)
Query: 39 FAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFT-------TVRILTT 91
F ++ E VL+ +I Y++ +A+TLF ++ D FT R+ T
Sbjct: 65 FNKIQEPALVLYNILIKCYIQNQLSHDAITLFSQL-LHEFNPDGFTLPCVIKGCARLHAT 123
Query: 92 --------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGL 137
F + FV +L++MY KC D++ A++VF M KD +W ++I G
Sbjct: 124 KEGKQIHGLVLKLGFGLNKFVSSSLVNMYSKCKDIDSAKKVFLSMDDKDLVSWNSLIDGY 183
Query: 138 AISGHGDTALDMFSQM 153
G + + +F +M
Sbjct: 184 VKCGQVELGMKLFEEM 199
>gi|296082968|emb|CBI22269.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 102/205 (49%), Gaps = 40/205 (19%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
MGF L+IF +++ Y G++ AR+ F +MPERD V W ++DGY++
Sbjct: 144 MGFCLDIF---------VPNSLIDSYFKLGELGEARRLFDEMPERDTVSWNTILDGYVKA 194
Query: 61 NRFREALTLFREMQTSNI----------RRDEFTTVRIL--------------------- 89
A LF +M N+ + D+ T + IL
Sbjct: 195 GEMNAAFELFEKMPARNVVSWSTMEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIER 254
Query: 90 TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDM 149
T F V ALIDMY KCG +E A +F M+RKD +W A+I GLA+ GHG+ AL +
Sbjct: 255 TRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQL 314
Query: 150 FSQMLRASIRLDEVTYVGVLSACTH 174
FS+M D+VT+VGVL ACTH
Sbjct: 315 FSRMKGEGFVPDKVTFVGVLCACTH 339
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 31/174 (17%)
Query: 31 QVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT 90
Q+ +A F Q+ + D +L+ +I ++R + A ++F EMQ S + D FT +L
Sbjct: 64 QMTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLK 123
Query: 91 T---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT 129
F DIFV +LID Y K G++ +A+R+F +M +D +
Sbjct: 124 ACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKLGELGEARRLFDEMPERDTVS 183
Query: 130 WTAMIVGLAISGHGDTALDMFSQM----------LRASIRLDEVTYVGVLSACT 173
W ++ G +G + A ++F +M + A ++ D+ T + +LSAC
Sbjct: 184 WNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMEAGLKFDDGTVISILSACA 237
>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 601
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 104/192 (54%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M ++V+SW+T+V GY G +++AR F +MP ++ V WT ++ G+
Sbjct: 237 AFKLFDEMPERNVVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLA 296
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGI---------------------AL 102
REA++LF +M+ + ++ D T + IL +G+ AL
Sbjct: 297 REAISLFDQMEKACLKLDNGTVMSILAACAESGLLGLGEKIHASIKNNNFKCTTEISNAL 356
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY KCG + A VF + KD +W AM+ GLA+ GHG AL++F +M ++
Sbjct: 357 VDMYAKCGRLNIAYDVFNDIKNKDVVSWNAMLQGLAMHGHGVKALELFKRMKEEGFSPNK 416
Query: 163 VTYVGVLSACTH 174
VT +GVL ACTH
Sbjct: 417 VTMIGVLCACTH 428
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 90/162 (55%), Gaps = 18/162 (11%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
+DV+SW +++SG G + AR+ F +MPE+D + W M+DGY++V + +A LF EM
Sbjct: 185 RDVVSWNSMISGLAKGGLYEEARKVFDEMPEKDGISWNTMLDGYVKVGKMDDAFKLFDEM 244
Query: 74 QTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
N+ ++T ++ YCK GD+E A+ +F KM K+ +WT +
Sbjct: 245 PERNVV--SWST----------------MVLGYCKAGDMEMARMLFDKMPVKNLVSWTII 286
Query: 134 IVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
+ G A G A+ +F QM +A ++LD T + +L+AC +
Sbjct: 287 VSGFAEKGLAREAISLFDQMEKACLKLDNGTVMSILAACAES 328
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 24/163 (14%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ ++S + Q+ +A F Q+ + L+ MI + ++ +A F MQ
Sbjct: 51 DLFVVPKLISAFSLCRQMLLATNAFNQVQYPNVHLYNTMIRAHSHNSQPSQAFATFFAMQ 110
Query: 75 TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGD-- 111
D FT +L F +D+FV +LID Y KCG
Sbjct: 111 RDGHYADNFTFPFLLKVCTGNVWLPVIESVHAQIEKFGFMSDVFVPNSLIDSYSKCGSCG 170
Query: 112 VEKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+ A+++F M R+D +W +MI GLA G + A +F +M
Sbjct: 171 ISAAKKLFVSMGARRDVVSWNSMISGLAKGGLYEEARKVFDEM 213
>gi|255561307|ref|XP_002521664.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539055|gb|EEF40651.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 574
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 103/192 (53%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F NM +D++SW TI+SGY+N G++D A+ +F +MPE++ + W MI G +
Sbjct: 351 AQEVFNNMPVRDLVSWNTILSGYLNAGRMDEAKTFFEEMPEKNILSWVVMISGLAQNGFG 410
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
E L LF +M+ ++ +T+ F++ + G AL
Sbjct: 411 EEGLKLFNQMKLRGFEPCDYAFAGAITSCSMLGLLEHGRQLHAQLVRFGFDSSLSAGNAL 470
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I MY +CG VE A+ +F M D +W AMI L G+G A+++F +ML I D
Sbjct: 471 ITMYARCGVVEAARTLFLSMPCVDSVSWNAMIAALGQHGYGVQAIELFEEMLIEGILPDR 530
Query: 163 VTYVGVLSACTH 174
+T++ VLSAC+H
Sbjct: 531 ITFLTVLSACSH 542
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 105/229 (45%), Gaps = 56/229 (24%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
MG A +F M +D +SWTTI++GY+ +D AR+ F M E+ V+W AMI GY+
Sbjct: 212 MGAARRLFDEMPVRDELSWTTIITGYVKNDDLDAAREVFDGMREKLVVVWNAMISGYMHR 271
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIF----------------------- 97
++EAL +FR+M + ++ DEFT I++ N F
Sbjct: 272 GLYQEALEMFRKMYLAGLKLDEFTYTSIISACANAGFLQHGKQVHAYILKTEAMPSPDFS 331
Query: 98 --VGIALIDMYCKCGDVEKAQRVF----------W---------------------KMLR 124
V AL+ +Y KCG V++AQ VF W +M
Sbjct: 332 LPVNNALVTLYWKCGKVDEAQEVFNNMPVRDLVSWNTILSGYLNAGRMDEAKTFFEEMPE 391
Query: 125 KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
K+ +W MI GLA +G G+ L +F+QM + + G +++C+
Sbjct: 392 KNILSWVVMISGLAQNGFGEEGLKLFNQMKLRGFEPCDYAFAGAITSCS 440
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 96/238 (40%), Gaps = 64/238 (26%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYL 58
+ +A +F + D+++ TT+++ Y G + +A++ F + P RD V++ AMI Y
Sbjct: 68 LSYARSLFDEIPQPDIVARTTLINAYSATGHLKLAKEMFYETPLIMRDAVIYNAMITAYS 127
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTTF----NND------------------I 96
N A+ LF +M+ ++ R D FT +L N+
Sbjct: 128 HNNDGHAAIELFCDMKRNDFRPDNFTFTSVLGALALVAENERHCQQLHCTVVKSGTWFVT 187
Query: 97 FVGIALIDMYCKCG----------------------------------------DVEKAQ 116
V ALI +Y KC D++ A+
Sbjct: 188 SVLNALISVYVKCASSPSVISSSLMGAARRLFDEMPVRDELSWTTIITGYVKNDDLDAAR 247
Query: 117 RVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
VF M K W AMI G G AL+MF +M A ++LDE TY ++SAC +
Sbjct: 248 EVFDGMREKLVVVWNAMISGYMHRGLYQEALEMFRKMYLAGLKLDEFTYTSIISACAN 305
>gi|21740620|emb|CAD40778.1| OSJNBb0012E08.2 [Oryza sativa Japonica Group]
Length = 486
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M+ DV+S +V GY+ G++ +A + F MPERD V W ++ G + R
Sbjct: 152 ARRVFDGMRAPDVVSHNALVHGYVKAGRLGLAVRVFEGMPERDAVSWGTVVAGCAKAGRL 211
Query: 64 REALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIAL 102
+A+ LF M+ R D+ +L T ++++ +
Sbjct: 212 EKAVRLFDRMRREGYRPDDVALAAVLSCCAQLGALDKGQEVHEYVRRTRPRPNVYLCTGI 271
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+D+Y KCG VE A+ VF K+ FTW A+IVGLA+ GHG ALD F +ML R D
Sbjct: 272 VDLYAKCGRVEVAREVFDACPEKNVFTWNALIVGLAMHGHGTVALDYFDRMLVEGFRPDG 331
Query: 163 VTYVGVLSACTH 174
T++GVL C+H
Sbjct: 332 TTFLGVLIGCSH 343
>gi|449432255|ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
gi|449480068|ref|XP_004155790.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
Length = 638
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 106/194 (54%), Gaps = 22/194 (11%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
FA +F M +DVISW+ ++ GY G + +AR F +MP++D V + ++ GY +
Sbjct: 274 FAHSLFNRMPKRDVISWSNMIDGYAKLGDIKVARTLFDEMPDKDVVAFNTIMAGYAQNGY 333
Query: 63 FREALTLFREMQ-TSNIRRDEFTTVRILTTFN-----------NDIF----------VGI 100
+ EAL +F EMQ SN+ DE T V L+ + ++ F V +
Sbjct: 334 YTEALEIFHEMQRQSNLSPDETTLVVALSAISQLGHVEKAASMHNYFLENGISVTGKVAV 393
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
ALIDMY KCG +E A +F + +K W AMI G+A +G G A M +M R S++
Sbjct: 394 ALIDMYSKCGSIENAILIFDGVDQKGIDHWNAMISGMARNGLGKLAFGMLLEMHRLSVKP 453
Query: 161 DEVTYVGVLSACTH 174
D +T++GVL+AC H
Sbjct: 454 DGITFIGVLNACAH 467
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 94/186 (50%), Gaps = 17/186 (9%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRV 60
FA ++F M +D +S+ +++ GY+ G +D+AR+ F MP +++ + W +M+ G+ +
Sbjct: 178 FARQVFDRMPIQDSVSYNSMIDGYVKSGTIDLARELFDSMPLEDKNLISWNSMLGGFAQT 237
Query: 61 -NRFREALTLFREMQTSNI-------------RRDEFTTVRILTTFNNDIFVGIALIDMY 106
+ AL LF +M ++ R EF D+ +ID Y
Sbjct: 238 KDGIGLALELFEKMPERDLVSWNTIIGGFAKCGRIEFAHSLFNRMPKRDVISWSNMIDGY 297
Query: 107 CKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS-IRLDEVTY 165
K GD++ A+ +F +M KD + ++ G A +G+ AL++F +M R S + DE T
Sbjct: 298 AKLGDIKVARTLFDEMPDKDVVAFNTIMAGYAQNGYYTEALEIFHEMQRQSNLSPDETTL 357
Query: 166 VGVLSA 171
V LSA
Sbjct: 358 VVALSA 363
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 21/129 (16%)
Query: 46 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT-------------- 91
D LW A+I Y N AL LF M + D+F+ IL
Sbjct: 89 DPFLWNAVIKSYSHGNEPVRALVLFCMMLENGFCVDKFSFSLILKACARVCLVEEGKQIH 148
Query: 92 -------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGD 144
+++F+ LI MY +CGD+E A++VF +M +D ++ +MI G SG D
Sbjct: 149 GLLMKLEIGSNLFLLNCLIAMYLRCGDIEFARQVFDRMPIQDSVSYNSMIDGYVKSGTID 208
Query: 145 TALDMFSQM 153
A ++F M
Sbjct: 209 LARELFDSM 217
>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Glycine max]
Length = 563
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 22/189 (11%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 67
F + N ++I T I+ Y G++ IAR F +MP+R+ V W +MI+ Y + R +EAL
Sbjct: 239 FMSTSNSNIILATAILEMYAKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQYERHQEAL 298
Query: 68 TLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIALIDMY 106
LF +M TS + D+ T + +L T DI + AL+DMY
Sbjct: 299 DLFFDMWTSGVYPDKATFLSVLSVCAHQCALALGQTVHAYLLKTGIATDISLATALLDMY 358
Query: 107 CKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR-ASIRLDEVTY 165
K G++ AQ++F + +KD WT+MI GLA+ GHG+ AL MF M +S+ D +TY
Sbjct: 359 AKTGELGNAQKIFSSLQKKDVVMWTSMINGLAMHGHGNEALSMFQTMQEDSSLVPDHITY 418
Query: 166 VGVLSACTH 174
+GVL AC+H
Sbjct: 419 IGVLFACSH 427
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D + T ++ Y++ + + F +P+ + V WT +I GY++ N+ EAL +F +M
Sbjct: 138 DAYTATGLLHMYVSCADMKSGLKVFDNIPKWNVVAWTCLIAGYVKNNQPYEALKVFEDMS 197
Query: 75 TSNIRRDEFTTVRIL----------------------------TTFNNDIFVGIALIDMY 106
N+ +E T V L +T N++I + A+++MY
Sbjct: 198 HWNVEPNEITMVNALIACAHSRDIDTGRWVHQRIRKAGYDPFMSTSNSNIILATAILEMY 257
Query: 107 CKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYV 166
KCG ++ A+ +F KM +++ +W +MI ALD+F M + + D+ T++
Sbjct: 258 AKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQYERHQEALDLFFDMWTSGVYPDKATFL 317
Query: 167 GVLSACTH 174
VLS C H
Sbjct: 318 SVLSVCAH 325
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 21/167 (12%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G ++ A Q+ +W +MI G++ + R ++ L+R+M + D FT +L
Sbjct: 52 GDINYADLVLRQIHNPSVYIWNSMIRGFVNSHNPRMSMLLYRQMIENGYSPDHFTFPFVL 111
Query: 90 ---------------------TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
+ F D + L+ MY C D++ +VF + + +
Sbjct: 112 KACCVIADQDCGKCIHSCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPKWNVV 171
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
WT +I G + AL +F M ++ +E+T V L AC H+
Sbjct: 172 AWTCLIAGYVKNNQPYEALKVFEDMSHWNVEPNEITMVNALIACAHS 218
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 63/148 (42%), Gaps = 25/148 (16%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE-----RDYVLWTAMID 55
+G A +IF +++ KDV+ WT++++G G + A F M E D++ + ++
Sbjct: 364 LGNAQKIFSSLQKKDVVMWTSMINGLAMHGHGNEALSMFQTMQEDSSLVPDHITYIGVLF 423
Query: 56 GYLRVNRFREALTLFR---EMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDV 112
V EA FR EM R+ + ++D+ + G
Sbjct: 424 ACSHVGLVEEAKKHFRLMTEMYGMVPGREHYG----------------CMVDLLSRAGHF 467
Query: 113 EKAQRVFWKM-LRKDKFTWTAMIVGLAI 139
+A+R+ M ++ + W A++ G I
Sbjct: 468 REAERLMETMTVQPNIAIWGALLNGCQI 495
>gi|224133640|ref|XP_002327644.1| predicted protein [Populus trichocarpa]
gi|222836729|gb|EEE75122.1| predicted protein [Populus trichocarpa]
Length = 564
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 106/201 (52%), Gaps = 28/201 (13%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
MG A ++F M ++D++SW +I+ GY G++ IA F MPER+ V W +I GYL+
Sbjct: 198 MGLAKKVFDEMSHRDLVSWNSIIDGYATLGELGIAHGLFEVMPERNVVSWNILISGYLKG 257
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVG 99
N L LFR+M +R ++ T V +L+ ++
Sbjct: 258 NNPGCVLMLFRKMMNDGMRGNDSTIVSVLSACGRSARLREGRSVHGFIVKKFSSMNVIHE 317
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML----- 154
LIDMY +C VE A+R+F K++R++ W AMI+G + G+ D L++F M+
Sbjct: 318 TTLIDMYNRCHKVEMARRIFDKVVRRNLGCWNAMILGHCLHGNPDDGLELFKDMVDRAGL 377
Query: 155 --RASIRLDEVTYVGVLSACT 173
R S+ DEVT++GVL AC
Sbjct: 378 GKRDSVHPDEVTFIGVLCACA 398
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 31/103 (30%)
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISG-----HG------------ 143
+LI Y CGD+ A++VF +M +D +W ++I G A G HG
Sbjct: 187 SLIHCYGCCGDMGLAKKVFDEMSHRDLVSWNSIIDGYATLGELGIAHGLFEVMPERNVVS 246
Query: 144 --------------DTALDMFSQMLRASIRLDEVTYVGVLSAC 172
L +F +M+ +R ++ T V VLSAC
Sbjct: 247 WNILISGYLKGNNPGCVLMLFRKMMNDGMRGNDSTIVSVLSAC 289
>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 649
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 65/189 (34%), Positives = 98/189 (51%), Gaps = 21/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F + D +SW +++ GY G++DIA F +M E++ + WT MI GY++ +EA
Sbjct: 201 LFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEA 260
Query: 67 LTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIALIDM 105
L LF EMQ S++ D + L T D +G LIDM
Sbjct: 261 LQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDM 320
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y KCGD+ +A VF + RK WTA+I G A GHG A+ F +M + I+ + +T+
Sbjct: 321 YAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITF 380
Query: 166 VGVLSACTH 174
VL+AC++
Sbjct: 381 TTVLTACSY 389
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 21/130 (16%)
Query: 46 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT-------------- 91
D LW MI G+ + +L L++ M + + +T +L
Sbjct: 108 DTFLWNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIH 167
Query: 92 -------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGD 144
+ ND++ +LI+ Y G+ + A +F ++ + D +W ++I G A +G D
Sbjct: 168 AQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMD 227
Query: 145 TALDMFSQML 154
AL +F +M+
Sbjct: 228 IALTLFRKMV 237
>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
Length = 690
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 68/193 (35%), Positives = 101/193 (52%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F M ++V+SW+T+VS Y +G +++AR F +MP ++ V WT M+ +
Sbjct: 320 AFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLV 379
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
EA LF EM+ + I D V IL V AL
Sbjct: 380 GEAGRLFTEMKEAAIELDVVAVVSILAACAESGCLALGKRIHRHVRQRKLGRSTLVCNAL 439
Query: 103 IDMYCKCGDVEKAQRVF-WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
+DM+CKCG V +A +F +++ KD +W +I G A+ GHG+ AL++F+QM + D
Sbjct: 440 MDMFCKCGCVNRADYIFDTEIVEKDSVSWNIIIGGFAMHGHGEKALNLFTQMKQQGFHPD 499
Query: 162 EVTYVGVLSACTH 174
VT + VLSACTH
Sbjct: 500 AVTLINVLSACTH 512
Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats.
Identities = 61/172 (35%), Positives = 91/172 (52%), Gaps = 18/172 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +DV+SW T ++ + +G+VD AR F +MPE+D V W M+DGY +
Sbjct: 258 AKKVFDEMTTRDVVSWNTAMAAMVRKGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEA 317
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
EA LF+ M N+ ++TV + YCK GD+E A+ +F KM
Sbjct: 318 EEAFELFQRMPGRNVV--SWSTV----------------VSAYCKKGDMEMARVIFDKMP 359
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
K+ TWT M+ A G A +F++M A+I LD V V +L+AC +
Sbjct: 360 AKNLVTWTIMVSACAQKGLVGEAGRLFTEMKEAAIELDVVAVVSILAACAES 411
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
D FVG ALID Y K + A++VF +M +D +W + + G D A MF +M
Sbjct: 238 DTFVGNALIDAYSKNDGLSDAKKVFDEMTTRDVVSWNTAMAAMVRKGEVDAARSMFDEM 296
>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 572
Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats.
Identities = 71/199 (35%), Positives = 111/199 (55%), Gaps = 28/199 (14%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
AL IF +KD+ +W ++V+ Y G ++ AR+ F +MPER+ + W+ +I+GY+ ++
Sbjct: 115 ALRIFDESVSKDLPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCLINGYVMCGKY 174
Query: 64 REALTLFREMQTSN-----IRRDEFTTVRILTTFNN---------------------DIF 97
+EAL LFREMQ + ++FT +L+ DI
Sbjct: 175 KEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIV 234
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156
+G ALIDMY KCG +E+A+RVF + +KD ++AMI LA+ G D +FS+M +
Sbjct: 235 LGTALIDMYAKCGSLERAKRVFDALGSKKDVKAYSAMICCLAMYGLTDECFQVFSEMTTS 294
Query: 157 -SIRLDEVTYVGVLSACTH 174
+I + VT+VG+L AC H
Sbjct: 295 NNINPNSVTFVGILGACVH 313
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
+L + D FV +L++MY CGD+ A R+F + + KD W +++ A +G + A
Sbjct: 88 LLFGLDKDPFVRTSLLNMYSSCGDLSSALRIFDESVSKDLPAWNSVVNAYAKAGLINHAR 147
Query: 148 DMFSQM 153
+F +M
Sbjct: 148 KLFDEM 153
>gi|255541270|ref|XP_002511699.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548879|gb|EEF50368.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 474
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 103/193 (53%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M + +ISW +V GY G VDIAR++F MP+RD V AM+ GY++
Sbjct: 274 AQALFDTMPERTIISWANMVDGYAKLGYVDIARKFFDNMPDRDVVACNAMMSGYVQNGYC 333
Query: 64 REALTLFREMQ-TSNIRRDEFTTVRILTT---------------------FNNDIFVGIA 101
EAL +F +MQ SN+ D T + +L+ F+ + +G+A
Sbjct: 334 MEALGIFHDMQRESNLCPDNATLLIVLSAIAQLGHIEKGVEIHCYIQENGFSLEEKLGVA 393
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMY KCG E A VF + K W AMI GLAI G G+ AL +M R + D
Sbjct: 394 LIDMYSKCGSAENAMLVFEGIKGKTADHWNAMINGLAIHGMGELALHFLIEMERVGSKPD 453
Query: 162 EVTYVGVLSACTH 174
++T++G+L+AC H
Sbjct: 454 DITFIGLLNACGH 466
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 91/186 (48%), Gaps = 17/186 (9%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRV 60
+A ++F M +D +S+ ++++GY+ G +D+ARQ + MP R+ V W +++ GY+R
Sbjct: 177 YARQVFDKMPMRDSVSYNSMIAGYVKHGNIDLARQLYDVMPINWRNLVSWNSLLSGYMRS 236
Query: 61 -NRFREALTLFREMQTSNI-----------RRDEFTTVRIL--TTFNNDIFVGIALIDMY 106
N F A LF +M ++ +R + L T I ++D Y
Sbjct: 237 DNGFELAWNLFEKMPERDLISWNSMIDGCAKRGRMEDAQALFDTMPERTIISWANMVDGY 296
Query: 107 CKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS-IRLDEVTY 165
K G V+ A++ F M +D AM+ G +G+ AL +F M R S + D T
Sbjct: 297 AKLGYVDIARKFFDNMPDRDVVACNAMMSGYVQNGYCMEALGIFHDMQRESNLCPDNATL 356
Query: 166 VGVLSA 171
+ VLSA
Sbjct: 357 LIVLSA 362
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 21/131 (16%)
Query: 44 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT------------ 91
+ D LW A+I + N ++AL +F M + + D+F+ +L
Sbjct: 86 KEDPFLWNAVIKTHSHGNDPKQALIIFSLMLQNGVFVDKFSVSLVLKACSRLGLVKEGMQ 145
Query: 92 ---------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGH 142
F +D+F+ LI +Y KC ++ A++VF KM +D ++ +MI G G+
Sbjct: 146 IHGLLRKLKFGSDVFLQNCLIGLYVKCRCIDYARQVFDKMPMRDSVSYNSMIAGYVKHGN 205
Query: 143 GDTALDMFSQM 153
D A ++ M
Sbjct: 206 IDLARQLYDVM 216
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 17/145 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV ++ Y+ +D ARQ F +MP RD V + +MI GY++ A L+ M
Sbjct: 158 DVFLQNCLIGLYVKCRCIDYARQVFDKMPMRDSVSYNSMIAGYVKHGNIDLARQLYDVMP 217
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGD-VEKAQRVFWKMLRKDKFTWTAM 133
+ R L ++N +L+ Y + + E A +F KM +D +W +M
Sbjct: 218 IN---------WRNLVSWN-------SLLSGYMRSDNGFELAWNLFEKMPERDLISWNSM 261
Query: 134 IVGLAISGHGDTALDMFSQMLRASI 158
I G A G + A +F M +I
Sbjct: 262 IDGCAKRGRMEDAQALFDTMPERTI 286
>gi|255541290|ref|XP_002511709.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548889|gb|EEF50378.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 450
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 103/193 (53%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M + +ISW +V GY G VDIAR++F MP+RD V AM+ GY++
Sbjct: 250 AQALFDTMPERTIISWANMVDGYAKLGYVDIARKFFDNMPDRDVVACNAMMSGYVQNGYC 309
Query: 64 REALTLFREMQ-TSNIRRDEFTTVRILTT---------------------FNNDIFVGIA 101
EAL +F +MQ SN+ D T + +L+ F+ + +G+A
Sbjct: 310 MEALGIFHDMQRESNLCPDNATLLIVLSAIAQLGHIEKGVEIHCYIQENGFSLEEKLGVA 369
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMY KCG E A VF + K W AMI GLAI G G+ AL +M R + D
Sbjct: 370 LIDMYSKCGSAENAMLVFEGIKGKTADHWNAMINGLAIHGMGELALHFLIEMERVGSKPD 429
Query: 162 EVTYVGVLSACTH 174
++T++G+L+AC H
Sbjct: 430 DITFIGLLNACGH 442
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 91/186 (48%), Gaps = 17/186 (9%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRV 60
+A ++F M +D +S+ ++++GY+ G +D+ARQ + MP R+ V W +++ GY+R
Sbjct: 153 YARQVFDKMPMRDSVSYNSMIAGYVKHGNIDLARQLYDVMPINWRNLVSWNSLLSGYMRS 212
Query: 61 -NRFREALTLFREMQTSNI-----------RRDEFTTVRIL--TTFNNDIFVGIALIDMY 106
N F A LF +M ++ +R + L T I ++D Y
Sbjct: 213 DNGFELAWNLFEKMPERDLISWNSMIDGCAKRGRMEDAQALFDTMPERTIISWANMVDGY 272
Query: 107 CKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS-IRLDEVTY 165
K G V+ A++ F M +D AM+ G +G+ AL +F M R S + D T
Sbjct: 273 AKLGYVDIARKFFDNMPDRDVVACNAMMSGYVQNGYCMEALGIFHDMQRESNLCPDNATL 332
Query: 166 VGVLSA 171
+ VLSA
Sbjct: 333 LIVLSA 338
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 21/131 (16%)
Query: 44 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT------------ 91
+ D LW A+I + N ++AL +F M + + D+F+ +L
Sbjct: 62 KEDPFLWNAVIKTHSHGNDPKQALIIFSLMLQNGVFVDKFSVSLVLKACSRLGLVKEGMQ 121
Query: 92 ---------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGH 142
F +D+F+ LI +Y KC ++ A++VF KM +D ++ +MI G G+
Sbjct: 122 IHGLLRKLKFGSDVFLQNCLIGLYVKCRCIDYARQVFDKMPMRDSVSYNSMIAGYVKHGN 181
Query: 143 GDTALDMFSQM 153
D A ++ M
Sbjct: 182 IDLARQLYDVM 192
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 17/145 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV ++ Y+ +D ARQ F +MP RD V + +MI GY++ A L+ M
Sbjct: 134 DVFLQNCLIGLYVKCRCIDYARQVFDKMPMRDSVSYNSMIAGYVKHGNIDLARQLYDVMP 193
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGD-VEKAQRVFWKMLRKDKFTWTAM 133
+ R L ++N +L+ Y + + E A +F KM +D +W +M
Sbjct: 194 IN---------WRNLVSWN-------SLLSGYMRSDNGFELAWNLFEKMPERDLISWNSM 237
Query: 134 IVGLAISGHGDTALDMFSQMLRASI 158
I G A G + A +F M +I
Sbjct: 238 IDGCAKRGRMEDAQALFDTMPERTI 262
>gi|356554965|ref|XP_003545811.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Glycine max]
Length = 517
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 108/196 (55%), Gaps = 25/196 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M++++++SW ++G I G+V++A F QMP R V WT +IDGY R N+
Sbjct: 191 AAQVFYEMQHRNLVSWNVFITGLIKLGEVELACSVFNQMPARSVVSWTLVIDGYTRRNQP 250
Query: 64 REALTLFREM-QTSNIRRDEFTTVRILTTFNN----------------------DIFVGI 100
+ALTLFR+M + I E T + I N D+ +
Sbjct: 251 IKALTLFRKMIEVDGIEPTEVTLLTIFPAIANIGCIKICQSVHGYVEKRGFNAFDVRITN 310
Query: 101 ALIDMYCKCGDVEKAQRVFWKML--RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
AL+D+Y KCG + R F ++ R++ +WT+ I G A++G G AL+ F M +A +
Sbjct: 311 ALLDLYAKCGCIASVSRFFQEIPDQRRNLVSWTSTISGFAMNGMGREALESFESMEKAGL 370
Query: 159 RLDEVTYVGVLSACTH 174
R + VT++GVLSAC+H
Sbjct: 371 RPNHVTFLGVLSACSH 386
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
F ++V L+ MY G + +A +VF++M ++ +W I GL G + A +F+
Sbjct: 168 FQFQVYVQTRLLQMYSSSGLLVEAAQVFYEMQHRNLVSWNVFITGLIKLGEVELACSVFN 227
Query: 152 QMLRASI 158
QM S+
Sbjct: 228 QMPARSV 234
>gi|255558236|ref|XP_002520145.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540637|gb|EEF42200.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 327
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 100/184 (54%), Gaps = 21/184 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+GF ++F + D++ T +VS G V AR+ F MP RD++ W+AMI GY +
Sbjct: 135 LGFCRQVFDLIPQPDLVCQTAMVSACSKCGDVGFARELFDSMPHRDHIAWSAMIAGYAQC 194
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFN-----------------NDIFV----G 99
+ REAL LF MQ +++ E + V +L+ + N I V G
Sbjct: 195 GQSREALALFHLMQLEDVKVSEVSMVSVLSASSQLGALDNGRWAHAYIERNKIPVTVTLG 254
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+DMY KCGD+ KA VFW M K+ +TW++ I GLA++G G L++FS M + +
Sbjct: 255 TALVDMYAKCGDMNKAMEVFWAMKEKNVYTWSSAIYGLAMNGAGHKCLELFSLMKKDGVL 314
Query: 160 LDEV 163
+E+
Sbjct: 315 PNEL 318
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML 154
D+ A++ KCGDV A+ +F M +D W+AMI G A G AL +F M
Sbjct: 149 DLVCQTAMVSACSKCGDVGFARELFDSMPHRDHIAWSAMIAGYAQCGQSREALALFHLMQ 208
Query: 155 RASIRLDEVTYVGVLSACT 173
+++ EV+ V VLSA +
Sbjct: 209 LEDVKVSEVSMVSVLSASS 227
>gi|449486568|ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Cucumis sativus]
Length = 532
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 105/196 (53%), Gaps = 21/196 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A ++F M +SWT ++ GY N G VD AR+ F +D +W AMI GY++
Sbjct: 156 MRSARQVFDEMPELSAVSWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMISGYVQN 215
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVG 99
N F+E L +FR MQ + + DE V IL+ + + V
Sbjct: 216 NCFKEGLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDTGIWIHRYLGRLGLPLTLRVS 275
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
LIDMY KCG ++ A+ +F +M ++D W AMI G+A+ G G+ A+ +F +M +A I+
Sbjct: 276 TGLIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGIK 335
Query: 160 LDEVTYVGVLSACTHN 175
D +T++ V AC+++
Sbjct: 336 PDNITFIAVWXACSNS 351
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 70/199 (35%), Gaps = 56/199 (28%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFT----- 84
G + A + F + ++ MI L F A+ +F + + I D +T
Sbjct: 53 GSLSHAFKLFQHIQHPTICIFNTMIKALLLRGEFLNAIAVFSAIFRNGIHPDTYTLPYVL 112
Query: 85 ------------------TVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKD 126
T+++ + N FVG +L+ MY ++ A++VF +M
Sbjct: 113 KASARMTNIHLGESIHACTIKLGSAVNE--FVGNSLLVMYRSFDNMRSARQVFDEMPELS 170
Query: 127 KFTWTAMIVGLAISGHGDTA-------------------------------LDMFSQMLR 155
+WT MI G A G DTA L MF M
Sbjct: 171 AVSWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCFKEGLHMFRLMQL 230
Query: 156 ASIRLDEVTYVGVLSACTH 174
+ DE V +LSAC H
Sbjct: 231 TEVEPDEAIIVTILSACAH 249
>gi|255539647|ref|XP_002510888.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550003|gb|EEF51490.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 554
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 108/200 (54%), Gaps = 30/200 (15%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVNRFR 64
++F M N+DV+SW +++ GY+ G +D + F +M R+ + W ++I G+++ R +
Sbjct: 164 KLFDEMSNRDVVSWNSMIIGYLRSGDLDQSLNLFRKMKINRNVITWNSIITGFVQGGRPK 223
Query: 65 EALTLFREMQ--------TSNIRRDEFTTVRILTT---------------------FNND 95
EAL F EMQ + +R D+ T +L+ D
Sbjct: 224 EALEFFHEMQCLRDDDGINNKVRPDKITIASVLSACAHLGAIDHGKWVHSYLRRSGLECD 283
Query: 96 IFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155
+ +G AL+DMY KCG +++A VF +M KD WTAMI A++G G A DMF++M
Sbjct: 284 MVIGTALVDMYGKCGCLQRAYEVFREMSEKDTLAWTAMISVFALNGFGKEAFDMFNEMEA 343
Query: 156 ASIRLDEVTYVGVLSACTHN 175
++ + VT+VG+LSAC H+
Sbjct: 344 GGVKPNLVTFVGLLSACAHS 363
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 87/236 (36%), Gaps = 71/236 (30%)
Query: 10 NMKNKD---VISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVN----- 61
N+ KD +IS + + G + A F + + + + MI Y +
Sbjct: 26 NLDQKDHYFLISRLLFFAALSDSGSLAYAADIFHYIKKPNLPFYNIMIRAYASKSNVDYD 85
Query: 62 --RFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFV 98
R +AL L+++M ++I D T +L +D+FV
Sbjct: 86 DARLCQALILYKQMLCNDISPDCLTFPFLLKECTRNVAIYGGRGIHGHAIKLGLYSDLFV 145
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM----- 153
+LI Y C V ++++F +M +D +W +MI+G SG D +L++F +M
Sbjct: 146 QNSLISFYSACEFVSNSRKLFDEMSNRDVVSWNSMIIGYLRSGDLDQSLNLFRKMKINRN 205
Query: 154 -----------------------------------LRASIRLDEVTYVGVLSACTH 174
+ +R D++T VLSAC H
Sbjct: 206 VITWNSIITGFVQGGRPKEALEFFHEMQCLRDDDGINNKVRPDKITIASVLSACAH 261
>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 697
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 72/195 (36%), Positives = 105/195 (53%), Gaps = 27/195 (13%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
IF +M ++VI+ T++VSGY AR F +M ER+ V W A+I GY + EA
Sbjct: 311 IFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEA 370
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTF---------------------------NNDIFVG 99
L+LF ++ ++ +T IL +DIFVG
Sbjct: 371 LSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVG 430
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
+LIDMY KCG VE+ VF KM+ +D +W AMI+G A +G+G+ AL++F +ML + +
Sbjct: 431 NSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEK 490
Query: 160 LDEVTYVGVLSACTH 174
D +T +GVLSAC H
Sbjct: 491 PDHITMIGVLSACGH 505
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 59/188 (31%), Positives = 95/188 (50%), Gaps = 21/188 (11%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE 65
++F M ++V +W ++V+G G +D A F MPERD W +M+ G+ + +R E
Sbjct: 76 QLFDKMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEE 135
Query: 66 ALTLFREMQTSNIRRDEFTTVRILTTFN---------------------NDIFVGIALID 104
AL F M +E+T L+ + +D+++G AL+D
Sbjct: 136 ALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVD 195
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVT 164
MY KCG+V AQ+VF +M ++ +W ++I +G AL +F ML + + DEVT
Sbjct: 196 MYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVT 255
Query: 165 YVGVLSAC 172
V+SAC
Sbjct: 256 LASVISAC 263
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 53/211 (25%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV + +V Y G V+ A+Q F +M +R+ V W ++I Y + EAL +F+ M
Sbjct: 186 DVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVML 245
Query: 75 TSNIRRDEFTTVRILTT----------------------FNNDIFVGIALIDMYCKCGDV 112
S + DE T +++ NDI + A +DMY KC +
Sbjct: 246 ESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRI 305
Query: 113 EKAQRV-------------------------------FWKMLRKDKFTWTAMIVGLAISG 141
++A+ + F KM ++ +W A+I G +G
Sbjct: 306 KEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNG 365
Query: 142 HGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+ AL +F + R S+ T+ +L AC
Sbjct: 366 ENEEALSLFCLLKRESVCPTHYTFANILKAC 396
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
I + F+N++F+ LID Y KCG +E +++F KM +++ FTW +++ GL G D A
Sbjct: 47 IKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGFLDEAD 106
Query: 148 DMFSQM 153
+F M
Sbjct: 107 SLFRSM 112
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 26/172 (15%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 67
F + + D+ +++ Y+ G V+ F +M ERD V W AMI G+ + EAL
Sbjct: 419 FQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEAL 478
Query: 68 TLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--- 124
LFREM S + D T + +L+ + G VE+ + F M R
Sbjct: 479 ELFREMLDSGEKPDHITMIGVLSACGH--------------AGFVEEGRHYFSSMTRDFG 524
Query: 125 ----KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+D +T ++G A G + A + +M ++ D V + +L+AC
Sbjct: 525 VAPLRDHYTCMVDLLGRA--GFLEEAKSIIEEM---PVQPDSVIWGSLLAAC 571
>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
Length = 642
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 109/192 (56%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +++ SW +++GY G++ +AR+ F +MP +D V W+ MI G+ F
Sbjct: 191 AEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNF 250
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
+A FRE++ +R +E + +L+ F I V AL
Sbjct: 251 NDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNAL 310
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
ID Y KCG+++ A+ VF MLR+ +WTAMI G+A+ G+G+ A+ +F++M ++I+ D
Sbjct: 311 IDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDS 370
Query: 163 VTYVGVLSACTH 174
+T++ +L AC+H
Sbjct: 371 ITFISILYACSH 382
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 18/155 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
TT++S Y + AR+ F +M E + V W A++ R ++A +FR M
Sbjct: 145 TTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCEGVKDAEQVFRCM------ 198
Query: 80 RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAI 139
+R LT++N ++ Y K G+++ A+ VF KM KD +W+ MIVG A
Sbjct: 199 -----PIRNLTSWN-------IMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAH 246
Query: 140 SGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+G+ + A F ++ R +R +EV+ GVLSAC
Sbjct: 247 NGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQ 281
Score = 42.4 bits (98), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 63/136 (46%), Gaps = 9/136 (6%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ +A +F +++N DV + T++ G + A Q F +M + L + +L
Sbjct: 55 LHYARRLFLDIRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLL- 113
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
+A R + T+ + + + + ++ +FVG LI MY +C + A++VF
Sbjct: 114 ----KAAANCRAL-TNGL---QLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFD 165
Query: 121 KMLRKDKFTWTAMIVG 136
+M+ + W A++
Sbjct: 166 EMIEPNIVAWNAIVAA 181
>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 795
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 102/192 (53%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M +D+ISW ++SGY+N +++ A F++MPER+ + WT MI G +
Sbjct: 345 ARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFG 404
Query: 64 REALTLFREMQTSNIRRDEF------TTVRILTTFNND---------------IFVGIAL 102
E L LF +M++ + ++ T +L + +N + G AL
Sbjct: 405 EEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNAL 464
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I MY +CG VE A+ VF M D +W AMI LA GHG A+++F QM++ I D
Sbjct: 465 ITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDR 524
Query: 163 VTYVGVLSACTH 174
+T++ +L+AC H
Sbjct: 525 ITFLTILTACNH 536
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 93/235 (39%), Gaps = 62/235 (26%)
Query: 1 MGFALEIFGNMKNKDV--ISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYL 58
M A ++F + SWTT+++GY+ + AR+ + V W AMI GY+
Sbjct: 200 MASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYV 259
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTT----------FNND------------- 95
R + EA FR M + I+ DE+T +++ FN
Sbjct: 260 RRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVE 319
Query: 96 ------IFVGIALIDMYCKCGDVEKAQRVFWKMLRKD----------------------- 126
+ V ALI Y K + +A+RVF KM +D
Sbjct: 320 PSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSI 379
Query: 127 --------KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
TWT MI GLA +G G+ L +F+QM + + + G ++AC+
Sbjct: 380 FSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACS 434
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 89/236 (37%), Gaps = 66/236 (27%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRV 60
+A ++F + D+++ TT++S Y + G V +A+Q F P RD V + AMI Y
Sbjct: 58 YARKLFDKIPKPDIVARTTLLSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHG 117
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFN--------------NDIFVGI------ 100
N AL LF +M+ D FT +L+ + I +G
Sbjct: 118 NDGHAALNLFVQMKRYGFLPDPFTFSSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSV 177
Query: 101 --ALIDMYCKCGD---------VEKAQRVF------------WKML-----RKDKF---- 128
AL+ Y C + A++VF W + R D
Sbjct: 178 TNALLSCYVCCASSPLVKSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAAR 237
Query: 129 ------------TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
W AMI G G + A D F +M I+ DE TY ++SAC
Sbjct: 238 ELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISAC 293
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 63/158 (39%), Gaps = 23/158 (14%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
+++ Y G V+ A F MP D V W AMI + +A+ LF +M +I
Sbjct: 463 ALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILP 522
Query: 81 DEFTTVRILTTFNNDIFV--------------GIA--------LIDMYCKCGDVEKAQRV 118
D T + ILT N+ + GI LID+ C+ G KAQ V
Sbjct: 523 DRITFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSV 582
Query: 119 FWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155
M W A++ G I G+ + + ++L
Sbjct: 583 IKSMPFEAGAPIWEALLAGCRIHGNMELGIQAADRLLE 620
Score = 39.7 bits (91), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 34/119 (28%)
Query: 87 RILTT-FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--------------------- 124
ILT+ F + F+ LI++YCK ++ A+++F K+ +
Sbjct: 30 HILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSSSGNVKL 89
Query: 125 ------------KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+D ++ AMI + G AL++F QM R D T+ VLSA
Sbjct: 90 AQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFSSVLSA 148
>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 564
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 67/176 (38%), Positives = 96/176 (54%), Gaps = 21/176 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T++V+ Y ++ AR+ F +MP R+ V WTAMI G+ RV EA+ LFREMQ + I+
Sbjct: 131 TSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQ 190
Query: 80 RDEFTTVRILTTFN---------------------NDIFVGIALIDMYCKCGDVEKAQRV 118
D T V +++ D+ + AL+DMY KCG +E+A++V
Sbjct: 191 PDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQV 250
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
F M KD W++MI+G A G A+D F QML + D VT++ VLSAC H
Sbjct: 251 FVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHVTFLAVLSACAH 306
Score = 85.1 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 87/166 (52%), Gaps = 23/166 (13%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF-REALTLFREM-QTSNIRRDEFTTVR 87
G ++ AR FAQ+P + W ++I GY +++ +E + LF+++ +T + FT
Sbjct: 38 GNINYARSVFAQIPHPNIFSWNSLIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAF 97
Query: 88 ILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKD 126
+L F + +FV +L++ Y KC ++ A++VF +M ++
Sbjct: 98 VLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRN 157
Query: 127 KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
WTAMI G A G D A+++F +M +A I+ D +T V V+SAC
Sbjct: 158 LVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSAC 203
>gi|116309314|emb|CAH66401.1| OSIGBa0155K12.4 [Oryza sativa Indica Group]
Length = 486
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M+ DV+S +V GY+ G++ +A + F MPERD V W ++ G + R
Sbjct: 152 ARRVFDRMRAPDVVSHNALVHGYVKAGRLGLAVRVFEGMPERDAVSWGTVVAGCAKAGRL 211
Query: 64 REALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIAL 102
+A+ LF M+ R D+ +L T ++++ +
Sbjct: 212 EKAVRLFDRMRREGYRPDDVALAAVLSCCAQLGALDKGQEVHEYVRRTRPRPNVYLCTGI 271
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+D+Y KCG VE A+ VF K+ FTW A+IVGLA+ GHG ALD F +ML R D
Sbjct: 272 VDLYAKCGRVEVAREVFDACPEKNVFTWNALIVGLAMHGHGTVALDYFDRMLVEGFRPDG 331
Query: 163 VTYVGVLSACTH 174
T++GVL C+H
Sbjct: 332 TTFLGVLIGCSH 343
>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
Length = 704
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 66/195 (33%), Positives = 111/195 (56%), Gaps = 22/195 (11%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
+A E+F M+ KDV SWT++V+ Y G ++ A Q F MP R+ V W+ MI Y ++N+
Sbjct: 298 YAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQ 357
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTT-------------FNNDIF---------VGI 100
EA+ LFREM + + + T V +L+ + N I +G
Sbjct: 358 PEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGN 417
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
ALIDM+ KCGDV +A ++F +M ++ +W MI+ A+ G + A+ +F Q+ +I
Sbjct: 418 ALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVP 477
Query: 161 DEVTYVGVLSACTHN 175
D++T++G+L++C+H+
Sbjct: 478 DQITFLGLLASCSHS 492
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 53/214 (24%), Positives = 90/214 (42%), Gaps = 53/214 (24%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF-RE 72
+ V+ +V Y N +D A + F +MPERD V WT ++DGY R EA LF R
Sbjct: 176 ESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRM 235
Query: 73 MQTSNIRRDEFTTVRILTT----------------------------------------- 91
+ +R + T V ++
Sbjct: 236 VVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGC 295
Query: 92 --FNNDIFVGI---------ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAIS 140
+ ++F G+ ++++ Y KCGD+E A+++F M R++ +W+ MI +
Sbjct: 296 VRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQL 355
Query: 141 GHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+ A+ +F +M+ A + + T V VLSAC
Sbjct: 356 NQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQ 389
>gi|255586940|ref|XP_002534070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223525897|gb|EEF28314.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 106/192 (55%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F + D+++W T++ G G VD +R+ F +M R+ V W +MI GY+R RF
Sbjct: 176 ARKVFDRGMDFDIVAWNTMIMGVAKCGLVDESRRLFDKMSLRNAVSWNSMISGYVRNGRF 235
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
+AL LF++MQ I EFT V +L F + V A+
Sbjct: 236 FDALELFQKMQVERIEPSEFTMVSLLNACACLGAIRQGEWIHDYMVKKKFELNPIVVTAI 295
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG ++KA +VF R+ W +MI+GLA++G + AL +FS + + +R D+
Sbjct: 296 IDMYSKCGSIDKAVQVFQSAPRRGLSCWNSMILGLAMNGQENEALQLFSVLQSSDLRPDD 355
Query: 163 VTYVGVLSACTH 174
V+++ VL+AC H
Sbjct: 356 VSFIAVLTACDH 367
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 85/197 (43%), Gaps = 26/197 (13%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQM-------PERDYVLWTAM 53
+ +A +F ++N ++ +W TI+ G+ + + M P+R + + ++
Sbjct: 71 INYAYLVFVQIQNPNIFAWNTIIRGFSRSSVPQNSISLYIDMLLTSPVQPQR--LTYPSV 128
Query: 54 IDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN-----------------DI 96
+ +++ E L +M + D F IL + N DI
Sbjct: 129 FKAFAQLDLASEGAQLHGKMIKLGLENDSFIRNTILFMYVNCGFTSEARKVFDRGMDFDI 188
Query: 97 FVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156
+I KCG V++++R+F KM ++ +W +MI G +G AL++F +M
Sbjct: 189 VAWNTMIMGVAKCGLVDESRRLFDKMSLRNAVSWNSMISGYVRNGRFFDALELFQKMQVE 248
Query: 157 SIRLDEVTYVGVLSACT 173
I E T V +L+AC
Sbjct: 249 RIEPSEFTMVSLLNACA 265
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 22/146 (15%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ-TSNIRRDEFTTVRI 88
G ++ A F Q+ + W +I G+ R + + +++L+ +M TS ++ T +
Sbjct: 69 GDINYAYLVFVQIQNPNIFAWNTIIRGFSRSSVPQNSISLYIDMLLTSPVQPQRLTYPSV 128
Query: 89 LTTF---------------------NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDK 127
F ND F+ ++ MY CG +A++VF + + D
Sbjct: 129 FKAFAQLDLASEGAQLHGKMIKLGLENDSFIRNTILFMYVNCGFTSEARKVFDRGMDFDI 188
Query: 128 FTWTAMIVGLAISGHGDTALDMFSQM 153
W MI+G+A G D + +F +M
Sbjct: 189 VAWNTMIMGVAKCGLVDESRRLFDKM 214
>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
Length = 660
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 100/182 (54%), Gaps = 21/182 (11%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
+ V+ T ++ Y G V +AR F + E++ W MI+G++ + + EAL LFREM
Sbjct: 220 RHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREM 279
Query: 74 QTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDV 112
QT I+ D+ T +L + D+ +G AL+DMY KCG +
Sbjct: 280 QTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSI 339
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
E A +VF +M KD TWTA+I+GLA+ G + AL F +M ++ D +T+VGVL+AC
Sbjct: 340 ETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAAC 399
Query: 173 TH 174
+H
Sbjct: 400 SH 401
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 22/182 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF-REM 73
D + T+++ Y N G + AR+ F +M ++ V W MI + + ++ EA+ LF R M
Sbjct: 119 DTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMM 178
Query: 74 QTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDV 112
++ N++ +E T V +LT F + + L+D+YCKCG V
Sbjct: 179 KSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCV 238
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+ A+ +F K K+ F+W MI G + + AL +F +M I+ D+VT +L AC
Sbjct: 239 QLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLAC 298
Query: 173 TH 174
TH
Sbjct: 299 TH 300
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 19/163 (11%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G + AR F+Q+P ++I G N +EAL ++EM + D +T +
Sbjct: 36 GSLQYARLVFSQIPNPTSYTCNSIIRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLF 95
Query: 90 TT------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWT 131
+ F +D + L++MY CG + A++VF KM K +W
Sbjct: 96 KSCRNSSEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWA 155
Query: 132 AMIVGLAISGHGDTALDMFSQMLRA-SIRLDEVTYVGVLSACT 173
MI A + A+ +F +M+++ +++ +EVT V VL+AC
Sbjct: 156 TMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACA 198
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 23/164 (14%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV T +V Y G ++ A Q F +MPE+D + WTA+I G + AL F EM
Sbjct: 322 DVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMH 381
Query: 75 TSNIRRDEFTTVRILTTFNNDIFV--GIA--------------------LIDMYCKCGDV 112
++ D T V +L ++ FV GI+ L+D+ + G +
Sbjct: 382 IKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRI 441
Query: 113 EKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155
+A+ + M + D+F ++ I G+ + A Q+L
Sbjct: 442 AEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAERAAKQLLE 485
>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 781
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 101/195 (51%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A E+F M ++V +W T+++GY G++ A+ F +MP+RD V W AMI GY +
Sbjct: 328 MEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQS 387
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
EAL LF +M+ R + + L+T + FVG
Sbjct: 388 GHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVG 447
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+ MYCKCG +E+A +F +M KD +W MI G + G G+ AL F M R ++
Sbjct: 448 NALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLK 507
Query: 160 LDEVTYVGVLSACTH 174
D+ T V VLSAC+H
Sbjct: 508 PDDATMVAVLSACSH 522
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 27/190 (14%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A + F +M +DV+SW TI++GY G++D ARQ F + P +D WTAM+ GY++
Sbjct: 238 ARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMV 297
Query: 64 REALTLFREMQTSN------------------IRRDEFT--TVRILTTFNNDIFVGIALI 103
EA LF +M N + ++ F R ++T+N +I
Sbjct: 298 EEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWN-------TMI 350
Query: 104 DMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEV 163
Y +CG + +A+ +F KM ++D +W AMI G + SGH AL +F QM R RL+
Sbjct: 351 TGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRS 410
Query: 164 TYVGVLSACT 173
++ LS C
Sbjct: 411 SFSSALSTCA 420
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 94/184 (51%), Gaps = 17/184 (9%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A E+F M +DV SW T++SGY G VD AR F +MPE++ V W A++ Y++
Sbjct: 142 LGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQN 201
Query: 61 NRFREALTLFREMQT-----------SNIRRDEFTTVRILTTFNN--DIFVGIALIDMYC 107
++ EA LF+ + +++ + R N D+ +I Y
Sbjct: 202 SKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYA 261
Query: 108 KCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVG 167
+ G +++A+++F + +D FTWTAM+ G + + A ++F +M +EV++
Sbjct: 262 QSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKM----PERNEVSWNA 317
Query: 168 VLSA 171
+L+
Sbjct: 318 MLAG 321
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 18/147 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
AL +F M +S+ ++SGY+ G+ ++AR+ F +MPERD V W MI GY+R
Sbjct: 83 ALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNL 142
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+A LF E R + ++N ++ Y + G V+ A+ VF +M
Sbjct: 143 GKARELF-----------EIMPERDVCSWN-------TMLSGYAQNGCVDDARSVFDRMP 184
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMF 150
K+ +W A++ + + A +F
Sbjct: 185 EKNDVSWNALLSAYVQNSKMEEACMLF 211
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 22/163 (13%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ D+ W +S Y+ G+ + A + F +MP V + MI GYLR F A LF E
Sbjct: 61 DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDE 120
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA 132
M R L ++N +I Y + ++ KA+ +F M +D +W
Sbjct: 121 MPE-----------RDLVSWN-------VMIKGYVRNRNLGKARELFEIMPERDVCSWNT 162
Query: 133 MIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
M+ G A +G D A +F +M ++V++ +LSA N
Sbjct: 163 MLSGYAQNGCVDDARSVFDRMPEK----NDVSWNALLSAYVQN 201
>gi|147811906|emb|CAN68178.1| hypothetical protein VITISV_000846 [Vitis vinifera]
Length = 633
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 106/191 (55%), Gaps = 23/191 (12%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+ G+M K+V+SW +++ YI G+++ A+ F +MPERD V W +MI GY+++ + A
Sbjct: 207 LIGSMPGKNVVSWNMLIARYIRLGKIEDAKAVFQEMPERDAVSWNSMIAGYVQIKDYARA 266
Query: 67 LTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDM 105
L LFREM+ +N+ + T + +L + + ++ AL+DM
Sbjct: 267 LALFREMEIANVEATDITLISVLGACAETGALEIGRKIHLSLKQREYKIEGYLSNALVDM 326
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRA--SIRLDEV 163
Y KCG + A VF ++ K W AMIV LA+ G+ + AL +FS M + R + V
Sbjct: 327 YAKCGHLNLAWEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFSTMEMSVDGARPNRV 386
Query: 164 TYVGVLSACTH 174
T++GVL AC+H
Sbjct: 387 TFIGVLIACSH 397
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 18/161 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
++D ++V Y G +D+AR+ F +M E+ W MI Y ++N F A +L
Sbjct: 151 DQDCFIQNSLVYLYSQCGFLDLARRVFDEMTEKTITSWNVMISAYDQINDFDSADSLIGS 210
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA 132
M N+ ++N LI Y + G +E A+ VF +M +D +W +
Sbjct: 211 MPGKNV-----------VSWN-------MLIARYIRLGKIEDAKAVFQEMPERDAVSWNS 252
Query: 133 MIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
MI G AL +F +M A++ ++T + VL AC
Sbjct: 253 MIAGYVQIKDYARALALFREMEIANVEATDITLISVLGACA 293
>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 600
Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats.
Identities = 67/197 (34%), Positives = 106/197 (53%), Gaps = 23/197 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYL 58
M A E+F M ++ +SW+T+V GY G +++AR F +MP ++ V WT +I GY
Sbjct: 232 MSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYA 291
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIF 97
+EA L +M S ++ D + IL + ++ +
Sbjct: 292 EKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAY 351
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
V AL+DMY KCG+++KA VF + +KD +W M+ GL + GHG A+++FS+M R
Sbjct: 352 VLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREG 411
Query: 158 IRLDEVTYVGVLSACTH 174
IR D+VT++ VL +C H
Sbjct: 412 IRPDKVTFIAVLCSCNH 428
Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 20/174 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+++F M +D +SW +++ G + G++ AR+ F +MP+RD + W M+DGY R
Sbjct: 173 AMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREM 232
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM- 122
+A LF +M N TV T ++ Y K GD+E A+ +F KM
Sbjct: 233 SKAFELFEKMPERN-------TVSWST-----------MVMGYSKAGDMEMARVMFDKMP 274
Query: 123 -LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
K+ TWT +I G A G A + QM+ + ++ D + +L+ACT +
Sbjct: 275 LPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTES 328
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 23/146 (15%)
Query: 31 QVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT 90
Q ++A + F Q+ E + L ++I + + ++ +A +F EMQ + D FT +L
Sbjct: 66 QTNLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLK 125
Query: 91 T---------------------FNNDIFVGIALIDMYCKCG--DVEKAQRVFWKMLRKDK 127
++DI+V ALID Y +CG V A ++F KM +D
Sbjct: 126 ACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDT 185
Query: 128 FTWTAMIVGLAISGHGDTALDMFSQM 153
+W +M+ GL +G A +F +M
Sbjct: 186 VSWNSMLGGLVKAGELRDARRLFDEM 211
>gi|413937223|gb|AFW71774.1| hypothetical protein ZEAMMB73_242527 [Zea mays]
Length = 625
Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats.
Identities = 70/184 (38%), Positives = 97/184 (52%), Gaps = 24/184 (13%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D SW T+VSGY G ++ AR+ F +MPER V W+AMID +R F EAL +F +M
Sbjct: 183 DAFSWNTMVSGYGKCGDLEAAREVFVRMPERGLVSWSAMIDACIRAGEFSEALRMFDQMM 242
Query: 75 TSNIRRD------------------------EFTTVRILTTFNNDIFVGIALIDMYCKCG 110
+ R D F L +++ + AL+DMYCKCG
Sbjct: 243 GNGFRPDAVVLSSVLKACAHLGALERGRWVHRFLKAEGLGRSPDNVMLETALVDMYCKCG 302
Query: 111 DVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLS 170
+++A VF + +D W AMI GLA++GHG AL++F +ML +E T+V VL
Sbjct: 303 CMDEAWWVFDGVQSQDVVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNESTFVVVLC 362
Query: 171 ACTH 174
ACTH
Sbjct: 363 ACTH 366
>gi|242059647|ref|XP_002458969.1| hypothetical protein SORBIDRAFT_03g043550 [Sorghum bicolor]
gi|241930944|gb|EES04089.1| hypothetical protein SORBIDRAFT_03g043550 [Sorghum bicolor]
Length = 530
Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats.
Identities = 64/192 (33%), Positives = 108/192 (56%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M +D SW+ +++GY G V AR+ F +MP ++ V TAMI+GY + +
Sbjct: 199 ARRVFDEMPTRDTASWSVLIAGYCKGGLVQNARELFDKMPSKNLVARTAMINGYAQTGQP 258
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
+ AL LFR+++ + I D T V +++ + ++ V AL
Sbjct: 259 KAALALFRDLEAAGIEPDGATMVGVISAVSQIGSTELAGWVGAYVDRKKIERNVKVLTAL 318
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DM+ KCG++E+A F ++ + D + +TA+I GLA GH AL +F +M +++ D
Sbjct: 319 VDMHAKCGNIEQALSAFREIPQPDAYPYTALISGLATHGHEKLALSVFERMQVQAVKPDP 378
Query: 163 VTYVGVLSACTH 174
+T+VGVL+AC+H
Sbjct: 379 ITFVGVLTACSH 390
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 50/160 (31%), Positives = 68/160 (42%), Gaps = 18/160 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D +S+ +++ + V A FA M R V W AM+ Y+ A +F EM
Sbjct: 148 DAVSFNSLLCAHARNASVRPAESLFAAMRSRTQVSWNAMVVLYVSAGDLVSARRVFDEMP 207
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
T D LI YCK G V+ A+ +F KM K+ TAMI
Sbjct: 208 T------------------RDTASWSVLIAGYCKGGLVQNARELFDKMPSKNLVARTAMI 249
Query: 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
G A +G AL +F + A I D T VGV+SA +
Sbjct: 250 NGYAQTGQPKAALALFRDLEAAGIEPDGATMVGVISAVSQ 289
>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 553
Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 108/199 (54%), Gaps = 28/199 (14%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F + +++++SW ++++GY+ G VD AR+ F +MPER+ V WT MI G ++ R
Sbjct: 173 ARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRC 232
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTF-----------------------NNDIFVGI 100
++AL LF EM+ + ++ D+ V L+ N + V +
Sbjct: 233 KQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSL 292
Query: 101 --ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
+LI MY CG ++KA +VF M ++ +WT+MI G A GH + AL +F M R
Sbjct: 293 NNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGT 352
Query: 159 ---RLDEVTYVGVLSACTH 174
R D +T++GVL AC+H
Sbjct: 353 DEGRPDGITFIGVLCACSH 371
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 83/207 (40%), Gaps = 55/207 (26%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
++S YI G + A + F ++ +W MI G+ + + + L+ M + +
Sbjct: 56 LLSFYITSGNLLNAHKVFERIENPSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPN 115
Query: 82 EFT---------TVRIL------------TTFNNDIFVGIALIDMYCKCGD---VEKAQR 117
EFT R+L + ++FV +L+++Y G V KA+R
Sbjct: 116 EFTYSFLIGGCARSRLLREGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARR 175
Query: 118 VF----------W---------------------KMLRKDKFTWTAMIVGLAISGHGDTA 146
VF W +M ++ +WT MI G A G A
Sbjct: 176 VFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQA 235
Query: 147 LDMFSQMLRASIRLDEVTYVGVLSACT 173
L +F +M RA ++LD+V V LSAC
Sbjct: 236 LHLFHEMRRAGVKLDQVALVAALSACA 262
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Query: 70 FREMQTSNI--RRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDK 127
F +QT + + + T I+ F+ F+ + L+ Y G++ A +VF ++
Sbjct: 22 FSLLQTCDTIKKLKQIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIENPST 81
Query: 128 FTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
W MI G + S ++++++M+ A +E TY ++ C
Sbjct: 82 TVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCA 127
>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
Length = 1221
Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 108/193 (55%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A EIF M ++ SW +++GYI G+++ A++ F++MP RD V W+ MI G+ F
Sbjct: 358 AREIFDKMLVRNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSF 417
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNND---------------------IFVGIAL 102
E+ + FRE+ + +R +E + +L+ + + V AL
Sbjct: 418 NESFSYFRELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNAL 477
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKF-TWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
IDMY +CG+V A+ VF M K +WT+MI GLA+ GHG+ A+ +F++M + + D
Sbjct: 478 IDMYSRCGNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPD 537
Query: 162 EVTYVGVLSACTH 174
E++++ +L AC+H
Sbjct: 538 EISFISLLYACSH 550
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 18/156 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
TT++ Y G V AR+ F +MP+ + V W A++ R N A +F +M
Sbjct: 312 TTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVVTACFRGNDVSGAREIFDKM------ 365
Query: 80 RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAI 139
VR T++N ++ Y K G++E A+R+F +M +D +W+ MIVG +
Sbjct: 366 -----LVRNHTSWN-------VMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSH 413
Query: 140 SGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
+G + + F ++LRA +R +EV+ GVLSAC+ +
Sbjct: 414 NGSFNESFSYFRELLRAEMRPNEVSLTGVLSACSQS 449
>gi|297733949|emb|CBI15196.3| unnamed protein product [Vitis vinifera]
Length = 467
Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 108/199 (54%), Gaps = 28/199 (14%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F + +++++SW ++++GY+ G VD AR+ F +MPER+ V WT MI G ++ R
Sbjct: 87 ARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRC 146
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTF-----------------------NNDIFVGI 100
++AL LF EM+ + ++ D+ V L+ N + V +
Sbjct: 147 KQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSL 206
Query: 101 --ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
+LI MY CG ++KA +VF M ++ +WT+MI G A GH + AL +F M R
Sbjct: 207 NNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGT 266
Query: 159 ---RLDEVTYVGVLSACTH 174
R D +T++GVL AC+H
Sbjct: 267 DEGRPDGITFIGVLCACSH 285
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 35/169 (20%)
Query: 40 AQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT-FNNDIFV 98
++ P + L+ M++ N F + + ++ +R E R++ + ++FV
Sbjct: 8 SETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHGRVVANGYCTNVFV 67
Query: 99 GIALIDMYCKCGD---VEKAQRVF----------W---------------------KMLR 124
+L+++Y G V KA+RVF W +M
Sbjct: 68 RTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPE 127
Query: 125 KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
++ +WT MI G A G AL +F +M RA ++LD+V V LSAC
Sbjct: 128 RNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACA 176
>gi|222616851|gb|EEE52983.1| hypothetical protein OsJ_35654 [Oryza sativa Japonica Group]
Length = 632
Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats.
Identities = 66/195 (33%), Positives = 111/195 (56%), Gaps = 22/195 (11%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
+A E+F M+ KDV SWT++V+ Y G ++ A Q F MP R+ V W+ MI Y ++N+
Sbjct: 298 YAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQ 357
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTT-------------FNNDIF---------VGI 100
EA+ LFREM + + + T V +L+ + N I +G
Sbjct: 358 PEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGN 417
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
ALIDM+ KCGDV +A ++F +M ++ +W MI+ A+ G + A+ +F Q+ +I
Sbjct: 418 ALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVP 477
Query: 161 DEVTYVGVLSACTHN 175
D++T++G+L++C+H+
Sbjct: 478 DQITFLGLLASCSHS 492
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 53/214 (24%), Positives = 90/214 (42%), Gaps = 53/214 (24%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF-RE 72
+ V+ +V Y N +D A + F +MPERD V WT ++DGY R EA LF R
Sbjct: 176 ESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRM 235
Query: 73 MQTSNIRRDEFTTVRILTT----------------------------------------- 91
+ +R + T V ++
Sbjct: 236 VVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGC 295
Query: 92 --FNNDIFVGI---------ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAIS 140
+ ++F G+ ++++ Y KCGD+E A+++F M R++ +W+ MI +
Sbjct: 296 VRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQL 355
Query: 141 GHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+ A+ +F +M+ A + + T V VLSAC
Sbjct: 356 NQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQ 389
>gi|357473845|ref|XP_003607207.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355508262|gb|AES89404.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 542
Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats.
Identities = 69/188 (36%), Positives = 101/188 (53%), Gaps = 24/188 (12%)
Query: 11 MKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 70
M K V+SW T+++ YI G V AR+ F MPER+ V W +MI G + V + AL LF
Sbjct: 216 MPCKTVVSWNTLIARYIRLGDVQAARRVFGCMPERNAVSWNSMIAGCVSVRDYAGALELF 275
Query: 71 REMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKC 109
EMQ + ++ E T + IL + ++G AL++MYCKC
Sbjct: 276 SEMQNAGVKPTEVTLISILGACAETGALEIGHKIYESLKVCEHKIESYLGNALVNMYCKC 335
Query: 110 GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM---LRASIRLDEVTYV 166
G++ A +F M K W AM++GLA+ G+ + +F++M L SIR D VT++
Sbjct: 336 GNLSLAWEIFNGMKMKTVSCWNAMVIGLAVHGYCEEVFQLFTEMEESLGGSIRPDRVTFI 395
Query: 167 GVLSACTH 174
GVL AC+H
Sbjct: 396 GVLVACSH 403
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/147 (30%), Positives = 67/147 (45%), Gaps = 18/147 (12%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT 85
Y G V +AR F Q+ + V W MI Y VN + A L E
Sbjct: 169 YSQCGLVSVARHLFDQIKDTSLVSWNIMISAYDLVNDYESADYLL-----------ELMP 217
Query: 86 VRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDT 145
+ + ++N LI Y + GDV+ A+RVF M ++ +W +MI G
Sbjct: 218 CKTVVSWN-------TLIARYIRLGDVQAARRVFGCMPERNAVSWNSMIAGCVSVRDYAG 270
Query: 146 ALDMFSQMLRASIRLDEVTYVGVLSAC 172
AL++FS+M A ++ EVT + +L AC
Sbjct: 271 ALELFSEMQNAGVKPTEVTLISILGAC 297
>gi|242061934|ref|XP_002452256.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
gi|241932087|gb|EES05232.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
Length = 590
Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats.
Identities = 69/184 (37%), Positives = 97/184 (52%), Gaps = 24/184 (13%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV+SW T+VSGY G ++ AR+ F +MPER V W+AMID +R F EAL +F +M
Sbjct: 148 DVVSWNTMVSGYGKCGDLEAAREVFVRMPERGLVSWSAMIDACVRTGEFSEALRVFDQMT 207
Query: 75 TSNIRRDEFTTVRILTTFNN------------------------DIFVGIALIDMYCKCG 110
+ + D V +L T + ++ + AL+DMYCKCG
Sbjct: 208 GNGFKPDAVVLVSVLKTCAHLGALERGRWVHRFLKAERLGGRPGNVMLETALVDMYCKCG 267
Query: 111 DVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLS 170
+ +A VF + D W AMI GLA++GHG AL++F +ML +E T+V L
Sbjct: 268 CMNEAWWVFDGVQSHDVVLWNAMIGGLAMNGHGKRALELFRRMLDKGFVPNESTFVVALC 327
Query: 171 ACTH 174
AC H
Sbjct: 328 ACIH 331
>gi|296089328|emb|CBI39100.3| unnamed protein product [Vitis vinifera]
Length = 483
Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 101/162 (62%), Gaps = 2/162 (1%)
Query: 14 KDVISWTTIVS-GYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
KDV ++V G+ G V+ AR+ F QMPE++ V W+ MI GY + N F +A+ LF+
Sbjct: 100 KDVYVQNSLVHMGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKV 159
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA 132
+Q+ +R +E T + I ++ +G AL+DMY +CG ++KA VF + +D +WTA
Sbjct: 160 LQSQGVRANE-TVMVIKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTA 218
Query: 133 MIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+I GLA+ G+ + +L F+ M+ A + ++T+ VLSAC+H
Sbjct: 219 LIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSH 260
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 22/157 (14%)
Query: 32 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT 91
+D A + F+Q+ + ++ AMI G+ +A + + Q + D T ++ +
Sbjct: 17 IDYASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKS 76
Query: 92 ---------------------FNNDIFVGIALIDM-YCKCGDVEKAQRVFWKMLRKDKFT 129
F D++V +L+ M + KCGDVE A+++F +M K+ T
Sbjct: 77 CTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMGFNKCGDVESARKLFDQMPEKNLVT 136
Query: 130 WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYV 166
W+ MI G A + H D A+++F + +R +E V
Sbjct: 137 WSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMV 173
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
++I T +V Y G +D A F +PERD + WTA+I G +L F M
Sbjct: 181 NLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMV 240
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM-LRKDKFTWTAM 133
+ + + T +L+ ++ G +E+A+R KM ++ + W A+
Sbjct: 241 EAGLTPRDITFTAVLSACSHG--------------GLLEEAERFVLKMPVKPNAPVWGAL 286
Query: 134 I 134
+
Sbjct: 287 L 287
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats.
Identities = 65/194 (33%), Positives = 104/194 (53%), Gaps = 24/194 (12%)
Query: 2 GFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVN 61
G+A+ ++ DV+ +V+ Y G V+ A + F +MP+++ V W A+I GY +
Sbjct: 346 GYAIR--SGFESNDVVG-NALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHG 402
Query: 62 RFREALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGI 100
EAL LF EMQ I+ D F V +L + F +++ VG
Sbjct: 403 HPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGT 462
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
L+D+Y KCG+V AQ++F +M +D +WT MI+ I GHG+ AL +FS+M +L
Sbjct: 463 GLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKL 522
Query: 161 DEVTYVGVLSACTH 174
D + + +L+AC+H
Sbjct: 523 DHIAFTAILTACSH 536
Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats.
Identities = 61/181 (33%), Positives = 94/181 (51%), Gaps = 21/181 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DVI T + S Y G ++ ARQ F +MP+RD V W A+I GY + + EAL LF EMQ
Sbjct: 154 DVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQ 213
Query: 75 TSNIRRDEFTTVRIL---------------------TTFNNDIFVGIALIDMYCKCGDVE 113
+ I+ + T V ++ + +D+ V L++MY KCG+V
Sbjct: 214 VNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVN 273
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
A ++F +M +D +W A+I G +++ AL F++M I+ + +T V VL AC
Sbjct: 274 TAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACA 333
Query: 174 H 174
H
Sbjct: 334 H 334
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 30/185 (16%)
Query: 20 TTIVSGYINRGQVDIARQYFA-----QMPERDY----VLWTAMIDGYLRVNRFREALTLF 70
T+ V + R +V R+ A Q + D V+W I GY++ + +AL L+
Sbjct: 49 TSTVVAQLRRNKVKTTREVSACANQTQFTQTDIRNNAVVWKETIIGYVKNGFWNKALRLY 108
Query: 71 REMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKC 109
+MQ + I D+ + ++ F +D+ VG AL MY KC
Sbjct: 109 YQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKC 168
Query: 110 GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVL 169
G +E A++VF +M ++D +W A+I G + +G AL +FS+M I+ + T V V+
Sbjct: 169 GSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVM 228
Query: 170 SACTH 174
C H
Sbjct: 229 PVCAH 233
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 68/158 (43%), Gaps = 12/158 (7%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
+V+ T +V Y G V+ A++ F +MPE+D V WT MI Y +AL LF +MQ
Sbjct: 457 NVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQ 516
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
+ + D ILT ++ V L C D A ++ + ++
Sbjct: 517 ETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKL---------EHYACLV 567
Query: 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
L +GH D A + M S+ D + +L AC
Sbjct: 568 DLLGRAGHLDEANGIIKNM---SLEPDANVWGALLGAC 602
>gi|115441803|ref|NP_001045181.1| Os01g0914600 [Oryza sativa Japonica Group]
gi|20804987|dbj|BAB92663.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113534712|dbj|BAF07095.1| Os01g0914600 [Oryza sativa Japonica Group]
Length = 589
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 67/192 (34%), Positives = 104/192 (54%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F M ++D++ W +++ GY G++D AR F +MPER+ + W+ +IDGY+R
Sbjct: 232 ARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEP 291
Query: 64 REALTLFREMQTSNIRRDEFTTV---------------RILTTFNN------DIFVGIAL 102
EAL F+ M I+ D V R L ++ D+ V AL
Sbjct: 292 NEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTAL 351
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG ++ A+ +F M +K TW MIVGL G+G A+ +F+QM +D+
Sbjct: 352 IDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDD 411
Query: 163 VTYVGVLSACTH 174
++ + VL++CTH
Sbjct: 412 LSILAVLTSCTH 423
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 47/152 (30%), Positives = 81/152 (53%), Gaps = 25/152 (16%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR----VNRFREALTL 69
+D++SW ++V+GY+ G+VD+A+ F +M +RD W MIDGY V+R RE L
Sbjct: 179 RDLVSWNSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARE---L 235
Query: 70 FREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT 129
F +M + D+ ++ID Y + G +++A+ +F +M ++ +
Sbjct: 236 FDQMP------------------DRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVIS 277
Query: 130 WTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
W+ +I G G + AL+ F +MLR I+ D
Sbjct: 278 WSIVIDGYVRFGEPNEALEFFQRMLRCGIKPD 309
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 47/123 (38%), Positives = 62/123 (50%), Gaps = 19/123 (15%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINR-GQVDIARQYFAQMPERDYVLWTAMIDGYLRVN 61
A ++F M+ +D SW T++ GY G VD AR+ F QMP+RD V W +MIDGY R
Sbjct: 199 LAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRDLVCWNSMIDGYARHG 258
Query: 62 RFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWK 121
R EA LF EM N+ I I +ID Y + G+ +A F +
Sbjct: 259 RMDEARVLFEEMPERNV-----------------ISWSI-VIDGYVRFGEPNEALEFFQR 300
Query: 122 MLR 124
MLR
Sbjct: 301 MLR 303
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 26/145 (17%)
Query: 33 DIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
D A FA + E R W ++ + + R +L F M+ + + D +T +L
Sbjct: 65 DHADSVFAHLAEEASRHAFPWNTLVRLHAAASP-RRSLLYFSRMRRAAVAPDAYTFPAVL 123
Query: 90 ---------------------TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
T + D+F ALI YC+ GD ++VF +R D
Sbjct: 124 KACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHGVR-DLV 182
Query: 129 TWTAMIVGLAISGHGDTALDMFSQM 153
+W +M+ G G D A D+F +M
Sbjct: 183 SWNSMVAGYVGCGEVDLAQDLFDEM 207
>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 726
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 71/195 (36%), Positives = 105/195 (53%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +I+ + +K +I T ++SGY G V AR F QM ERD V W+AMI GY
Sbjct: 273 MDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAES 332
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
++ +EAL LF EM D+ T + +++ F + V
Sbjct: 333 DQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVN 392
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMY KCG++ KA+ VF M RK+ +W++MI A+ G+ D+A+ +F +M +I
Sbjct: 393 NALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIE 452
Query: 160 LDEVTYVGVLSACTH 174
+ VT++GVL AC H
Sbjct: 453 PNGVTFIGVLYACGH 467
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 21/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDY----VLWTAMIDGYLRVNR 62
+F M + D ++W I+ GY G D A + F M D V+ ++
Sbjct: 178 LFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGN 237
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNN-----------------DIFVGIALIDM 105
T+ ++ + D ++ + N + V A++
Sbjct: 238 LSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSG 297
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y K G V+ A+ +F +M+ +D W+AMI G A S AL +F +ML+ D++T
Sbjct: 298 YAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITM 357
Query: 166 VGVLSACTH 174
+ V+SAC+H
Sbjct: 358 LSVISACSH 366
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 42/83 (50%)
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
F +D F+ LI MY C + A+ +F KM D W +I G +GH D AL +F
Sbjct: 152 FVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFE 211
Query: 152 QMLRASIRLDEVTYVGVLSACTH 174
M + ++ D V VLSAC H
Sbjct: 212 DMRSSDMKPDSVILCTVLSACGH 234
>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
Length = 635
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 70/194 (36%), Positives = 100/194 (51%), Gaps = 22/194 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M + V+ T +++ Y G +D AR+ F MP +D++ W AMIDGY + R
Sbjct: 184 ARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRP 243
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN----------------------DIFVGIA 101
EAL LFR M S + DE + L+ + VG A
Sbjct: 244 NEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTA 303
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMYCKCG +E A VF + KD W AMI G A+ G AL+MFSQ+ +
Sbjct: 304 LIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPT 363
Query: 162 EVTYVGVLSACTHN 175
++T++G+L+AC+H+
Sbjct: 364 DITFIGLLNACSHS 377
>gi|38345134|emb|CAE02724.2| OSJNBa0055H05.11 [Oryza sativa Japonica Group]
gi|215697200|dbj|BAG91194.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 408
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 105/195 (53%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +++ + K+++ TT+V GY G+V+IA F MP +D V W+AMI GY
Sbjct: 61 MEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAES 120
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNND---------------------IFVG 99
++ EAL LF +MQ S ++ DE T + +++ N + +G
Sbjct: 121 SKPMEALNLFHDMQRSGVKPDEITMLSVISACANVGALEKARCIHSFVENHSMCKILPIG 180
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDM+ KCG + A VF M +K+ TWT++I A+ G G +AL +F M I+
Sbjct: 181 NALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQ 240
Query: 160 LDEVTYVGVLSACTH 174
+ VT++G+L AC H
Sbjct: 241 PNGVTFLGLLYACCH 255
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 31/111 (27%)
Query: 95 DIFVGIALIDMYCKCGDVEKAQR-------------------------------VFWKML 123
D V AL++MY C D+E A++ +F M
Sbjct: 44 DAQVSCALMNMYASCADMEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMP 103
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
KD +W+AMI G A S AL++F M R+ ++ DE+T + V+SAC +
Sbjct: 104 AKDVVSWSAMIAGYAESSKPMEALNLFHDMQRSGVKPDEITMLSVISACAN 154
>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
Length = 634
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 70/194 (36%), Positives = 100/194 (51%), Gaps = 22/194 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M + V+ T +++ Y G +D AR+ F MP +D++ W AMIDGY + R
Sbjct: 183 ARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRP 242
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN----------------------DIFVGIA 101
EAL LFR M S + DE + L+ + VG A
Sbjct: 243 NEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTA 302
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMYCKCG +E A VF + KD W AMI G A+ G AL+MFSQ+ +
Sbjct: 303 LIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPT 362
Query: 162 EVTYVGVLSACTHN 175
++T++G+L+AC+H+
Sbjct: 363 DITFIGLLNACSHS 376
>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 766
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 101/195 (51%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A E+F M ++V SW T+++GY G + AR +F +MP+RD + W A+I GY +
Sbjct: 313 MDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQS 372
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
EAL LF EM+ R + T L+T + +VG
Sbjct: 373 GYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVG 432
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+ MYCKCG+++ A VF + K+ +W MI G A G G AL +F M + I
Sbjct: 433 NALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGIL 492
Query: 160 LDEVTYVGVLSACTH 174
D+VT VGVLSAC+H
Sbjct: 493 PDDVTMVGVLSACSH 507
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 91/171 (53%), Gaps = 18/171 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F +DV +WT +VSGY+ G +D AR+ F MPE++ V W A+I GY++ R
Sbjct: 254 AQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRM 313
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+A LF M N+ +++N +I Y + GD+ +A+ F +M
Sbjct: 314 DQARELFEAMPCQNV-----------SSWN-------TMITGYAQNGDIAQARNFFDRMP 355
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
++D +W A+I G A SG+G+ AL +F +M R RL+ T+ LS C
Sbjct: 356 QRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAE 406
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 80/195 (41%), Gaps = 44/195 (22%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A ++F M +D++SW ++SG + + AR F QMPERD V W AM+ GY +
Sbjct: 98 LARQLFEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGY 157
Query: 63 FREALTLFREMQTSN------------------------------------------IRR 80
+EA +F EM N ++R
Sbjct: 158 VKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKR 217
Query: 81 DEFTTVRIL--TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLA 138
+ R + D +I Y + G++ +AQR+F + +D FTWTAM+ G
Sbjct: 218 NRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYV 277
Query: 139 ISGHGDTALDMFSQM 153
+G D A +F M
Sbjct: 278 QNGMLDEARRVFDGM 292
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 18/147 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
AL +F +M + ISW ++SG ++ + +ARQ F +MP RD V W MI G +R
Sbjct: 68 ALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMPTRDLVSWNVMISGCVRYRNL 127
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
R A LF +M R + ++N A++ Y + G V++A+ +F +M
Sbjct: 128 RAARLLFDQMPE-----------RDVVSWN-------AMLSGYAQNGYVKEAKEIFDEMP 169
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMF 150
K+ +W M+ +G + A +F
Sbjct: 170 CKNSISWNGMLAAYVQNGRIEDARRLF 196
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 22/163 (13%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ D++ W ++ ++ GQ D A + F MP R + W AMI G L ++F A LF +
Sbjct: 46 DADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEK 105
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA 132
M T R L ++N +I + ++ A+ +F +M +D +W A
Sbjct: 106 MPT-----------RDLVSWN-------VMISGCVRYRNLRAARLLFDQMPERDVVSWNA 147
Query: 133 MIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
M+ G A +G+ A ++F +M + +++ G+L+A N
Sbjct: 148 MLSGYAQNGYVKEAKEIFDEMPCK----NSISWNGMLAAYVQN 186
>gi|125573086|gb|EAZ14601.1| hypothetical protein OsJ_04525 [Oryza sativa Japonica Group]
Length = 616
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 67/192 (34%), Positives = 104/192 (54%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F M ++D++ W +++ GY G++D AR F +MPER+ + W+ +IDGY+R
Sbjct: 232 ARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEP 291
Query: 64 REALTLFREMQTSNIRRDEFTTV---------------RILTTFNN------DIFVGIAL 102
EAL F+ M I+ D V R L ++ D+ V AL
Sbjct: 292 NEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTAL 351
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG ++ A+ +F M +K TW MIVGL G+G A+ +F+QM +D+
Sbjct: 352 IDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDD 411
Query: 163 VTYVGVLSACTH 174
++ + VL++CTH
Sbjct: 412 LSILAVLTSCTH 423
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 47/152 (30%), Positives = 81/152 (53%), Gaps = 25/152 (16%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR----VNRFREALTL 69
+D++SW ++V+GY+ G+VD+A+ F +M +RD W MIDGY V+R RE L
Sbjct: 179 RDLVSWNSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARE---L 235
Query: 70 FREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT 129
F +M + D+ ++ID Y + G +++A+ +F +M ++ +
Sbjct: 236 FDQMP------------------DRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVIS 277
Query: 130 WTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
W+ +I G G + AL+ F +MLR I+ D
Sbjct: 278 WSIVIDGYVRFGEPNEALEFFQRMLRCGIKPD 309
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 47/123 (38%), Positives = 62/123 (50%), Gaps = 19/123 (15%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINR-GQVDIARQYFAQMPERDYVLWTAMIDGYLRVN 61
A ++F M+ +D SW T++ GY G VD AR+ F QMP+RD V W +MIDGY R
Sbjct: 199 LAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRDLVCWNSMIDGYARHG 258
Query: 62 RFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWK 121
R EA LF EM N+ I I +ID Y + G+ +A F +
Sbjct: 259 RMDEARVLFEEMPERNV-----------------ISWSI-VIDGYVRFGEPNEALEFFQR 300
Query: 122 MLR 124
MLR
Sbjct: 301 MLR 303
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 26/145 (17%)
Query: 33 DIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
D A FA + E R W ++ + + R +L F M+ + + D +T +L
Sbjct: 65 DHADSVFAHLAEEASRHAFPWNTLVRLHAAASP-RRSLLYFSRMRRAAVAPDAYTFPAVL 123
Query: 90 ---------------------TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
T + D+F ALI YC+ GD ++VF +R D
Sbjct: 124 KACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHGVR-DLV 182
Query: 129 TWTAMIVGLAISGHGDTALDMFSQM 153
+W +M+ G G D A D+F +M
Sbjct: 183 SWNSMVAGYVGCGEVDLAQDLFDEM 207
>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 697
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 70/195 (35%), Positives = 105/195 (53%), Gaps = 27/195 (13%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
IF +M ++VI+ T+++SGY AR F +M ER+ V W A+I GY + EA
Sbjct: 311 IFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEA 370
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTF---------------------------NNDIFVG 99
L+LF ++ ++ ++ IL +DIFVG
Sbjct: 371 LSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVG 430
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
+LIDMY KCG VE+ VF KM+ +D +W AMI+G A +G+G+ AL++F +ML + +
Sbjct: 431 NSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEK 490
Query: 160 LDEVTYVGVLSACTH 174
D +T +GVLSAC H
Sbjct: 491 PDHITMIGVLSACGH 505
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 60/188 (31%), Positives = 97/188 (51%), Gaps = 21/188 (11%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE 65
++F M +++ +W ++V+G G +D A F MPERD W +M+ G+ + +R E
Sbjct: 76 QVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEE 135
Query: 66 ALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALID 104
AL F M +E++ +L+ F +D+++G AL+D
Sbjct: 136 ALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVD 195
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVT 164
MY KCG+V AQRVF +M ++ +W ++I +G ALD+F ML + + DEVT
Sbjct: 196 MYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVT 255
Query: 165 YVGVLSAC 172
V+SAC
Sbjct: 256 LASVISAC 263
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 26/183 (14%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV + +V Y G V+ A++ F +M +R+ V W ++I + + EAL +F+ M
Sbjct: 186 DVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMML 245
Query: 75 TSNIRRDEFTTVRILTT----------------------FNNDIFVGIALIDMYCKCGDV 112
S + DE T +++ NDI + A +DMY KC +
Sbjct: 246 ESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRI 305
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
++A+ +F M ++ T+MI G A++ A MF++M ++ V++ +++
Sbjct: 306 KEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNV----VSWNALIAGY 361
Query: 173 THN 175
T N
Sbjct: 362 TQN 364
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
I + F+N+IF+ LID Y KCG +E ++VF KM +++ +TW +++ GL G D A
Sbjct: 47 IKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEAD 106
Query: 148 DMFSQM 153
+F M
Sbjct: 107 SLFRSM 112
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 47/172 (27%), Positives = 76/172 (44%), Gaps = 26/172 (15%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 67
F + + D+ +++ Y+ G V+ F +M ERD V W AMI G+ + EAL
Sbjct: 419 FQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEAL 478
Query: 68 TLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--- 124
LFREM S + D T + +L+ + G VE+ + F M R
Sbjct: 479 ELFREMLESGEKPDHITMIGVLSACGH--------------AGFVEEGRHYFSSMTRDFG 524
Query: 125 ----KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+D +T ++G A G + A M +M ++ D V + +L+AC
Sbjct: 525 VAPLRDHYTCMVDLLGRA--GFLEEAKSMIEEM---PMQPDSVIWGSLLAAC 571
>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 101/195 (51%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A E+F M ++V SW T+++GY G + AR +F +MP+RD + W A+I GY +
Sbjct: 232 MDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQS 291
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
EAL LF EM+ R + T L+T + +VG
Sbjct: 292 GYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVG 351
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+ MYCKCG+++ A VF + K+ +W MI G A G G AL +F M + I
Sbjct: 352 NALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGIL 411
Query: 160 LDEVTYVGVLSACTH 174
D+VT VGVLSAC+H
Sbjct: 412 PDDVTMVGVLSACSH 426
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 91/170 (53%), Gaps = 18/170 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F +DV +WT +VSGY+ G +D AR+ F MPE++ V W A+I GY++ R
Sbjct: 173 AQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRM 232
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+A LF M N+ +++N +I Y + GD+ +A+ F +M
Sbjct: 233 DQARELFEAMPCQNV-----------SSWN-------TMITGYAQNGDIAQARNFFDRMP 274
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
++D +W A+I G A SG+G+ AL +F +M R RL+ T+ LS C
Sbjct: 275 QRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCA 324
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 13/160 (8%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M +DV+SW ++SGY G V A++ F +MP ++ + W M+ Y++ R +A
Sbjct: 52 LFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDA 111
Query: 67 LTLFRE-----------MQTSNIRRDEFTTVRIL--TTFNNDIFVGIALIDMYCKCGDVE 113
LF M ++R+ R + D +I Y + G++
Sbjct: 112 RRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELL 171
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+AQR+F + +D FTWTAM+ G +G D A +F M
Sbjct: 172 EAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGM 211
>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 687
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 101/195 (51%), Gaps = 27/195 (13%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
IF M + V+S T++VSGY +V +AR F+ M +D + W A+I G + EA
Sbjct: 310 IFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEA 369
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNN---------------------------DIFVG 99
L LFR ++ ++ +T +L N D+FVG
Sbjct: 370 LILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVG 429
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
+LIDMY KCG VE RVF ML KD +W AMIVG A +G G+ AL++F +ML +
Sbjct: 430 NSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEA 489
Query: 160 LDEVTYVGVLSACTH 174
D VT +GVL AC+H
Sbjct: 490 PDHVTMIGVLCACSH 504
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 97/191 (50%), Gaps = 21/191 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +++ SW +I+ + G +D A F +MP+ D W +MI G+ + RF
Sbjct: 73 ARKLFDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRF 132
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
EAL F +M +E++ L+ + +D+++G AL
Sbjct: 133 DEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSAL 192
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY KCG VE AQ VF +M + + +W ++I +G D AL +F +M++ + DE
Sbjct: 193 VDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDE 252
Query: 163 VTYVGVLSACT 173
VT V+SAC
Sbjct: 253 VTLASVVSACA 263
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 26/183 (14%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV + +V Y G+V+ A+ F +M R V W ++I Y + EAL +F EM
Sbjct: 185 DVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMI 244
Query: 75 TSNIRRDEFTTVRILTT----------------------FNNDIFVGIALIDMYCKCGDV 112
+ DE T +++ F ND+ +G AL+DMY KC +
Sbjct: 245 KCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRI 304
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+A+ +F M + + T+M+ G A + A MFS M+ D +T+ +++ C
Sbjct: 305 NEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVK----DVITWNALIAGC 360
Query: 173 THN 175
T N
Sbjct: 361 TQN 363
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 42/66 (63%)
Query: 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
I + F ++ F+ LID+Y KCG V+ A+++F +ML ++ F+W ++I SG D A+
Sbjct: 46 IKSPFASETFIQNRLIDVYGKCGCVDVARKLFDRMLERNIFSWNSIICAFTKSGFLDDAV 105
Query: 148 DMFSQM 153
+F +M
Sbjct: 106 HIFEKM 111
>gi|147817753|emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]
Length = 569
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 108/199 (54%), Gaps = 28/199 (14%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F + +++++SW ++++GY+ G VD AR+ F +MPER+ V WT MI G ++ R
Sbjct: 189 ARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRC 248
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTF-----------------------NNDIFVGI 100
++AL LF EM+ + ++ D+ V L+ N + V +
Sbjct: 249 KQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSL 308
Query: 101 --ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
+LI MY CG ++KA +VF M ++ +WT+MI G A GH + AL +F M R
Sbjct: 309 NNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGT 368
Query: 159 ---RLDEVTYVGVLSACTH 174
R D +T++GVL AC+H
Sbjct: 369 DEGRPDGITFIGVLCACSH 387
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 84/205 (40%), Gaps = 46/205 (22%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F ++N W ++ G+ ++ P + L+ M++ N F
Sbjct: 85 AHKVFERIENPSTTVWNQMIRGHSQ-----------SETPHKLVELYNRMVEAEAEPNEF 133
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT-FNNDIFVGIALIDMYCKCGD---VEKAQRVF 119
+ + ++ +R E R++ + ++FV +L+++Y G V KA+RVF
Sbjct: 134 TYSFLIGGCARSXLLREGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVF 193
Query: 120 ----------W---------------------KMLRKDKFTWTAMIVGLAISGHGDTALD 148
W +M ++ +WT MI G A G AL
Sbjct: 194 DEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALH 253
Query: 149 MFSQMLRASIRLDEVTYVGVLSACT 173
+F +M RA ++LD+V V LSAC
Sbjct: 254 LFHEMRRAGVKLDQVALVAALSACA 278
Score = 40.4 bits (93), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 43/92 (46%)
Query: 82 EFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISG 141
+ T I+ F+ F+ + L+ Y G++ A +VF ++ W MI G + S
Sbjct: 52 QIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIENPSTTVWNQMIRGHSQSE 111
Query: 142 HGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
++++++M+ A +E TY ++ C
Sbjct: 112 TPHKLVELYNRMVEAEAEPNEFTYSFLIGGCA 143
>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
Length = 648
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 71/178 (39%), Positives = 99/178 (55%), Gaps = 22/178 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 78
T +++ Y QV +AR F M +++ V W+AM+ GY RV EAL LFREMQ +
Sbjct: 214 TGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGV 273
Query: 79 RRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQR 117
DE T V +++ D+ + ALIDMY KCG +E+A+
Sbjct: 274 EPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARG 333
Query: 118 VFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
VF M+ KD W+AMIVG AI G + AL +FS+ML +R + VT++GVLSAC H+
Sbjct: 334 VFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHS 391
>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 667
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 68/196 (34%), Positives = 111/196 (56%), Gaps = 21/196 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ FA +F M +KDV+SWT++V+ Y N+G V+ A Q F MP ++ V W ++I ++
Sbjct: 289 LQFAKHVFDQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQE 348
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN--DIFVGI------------------ 100
++ EA+ LF M S + D+ T V IL+ +N D+ +G
Sbjct: 349 GQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICDNIITVSVTLC 408
Query: 101 -ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
+LIDMY KCG ++ A +F+ M K+ +W +I LA+ G G+ A++MF M + +
Sbjct: 409 NSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEMFKSMQASGLY 468
Query: 160 LDEVTYVGVLSACTHN 175
DE+T+ G+LSAC+H+
Sbjct: 469 PDEITFTGLLSACSHS 484
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 50/153 (32%), Positives = 76/153 (49%), Gaps = 21/153 (13%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
I++ Y+ + ARQ F + +R V W +MI GY ++ EA+ LF+EM + D
Sbjct: 178 ILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEAD 237
Query: 82 EFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVEKAQRVFW 120
FT V +L+ + D V ALIDMY KCG ++ A+ VF
Sbjct: 238 VFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFD 297
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+ML KD +WT+M+ A G + A+ +F+ M
Sbjct: 298 QMLDKDVVSWTSMVNAYANQGLVENAVQIFNHM 330
Score = 59.3 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 21/179 (11%)
Query: 16 VISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 75
V++ ++S + G + A F Q+P+ + ++ +I GY N ++L LFR+M +
Sbjct: 71 VVTLGKLLSLCVQEGDLRYAHLLFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVS 130
Query: 76 SNIRRDEFTTVRILTTFNNDIF---------------------VGIALIDMYCKCGDVEK 114
+ ++FT +L F V A++ Y C +
Sbjct: 131 AGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAIKLGMGPHACVQNAILTAYVACRLILS 190
Query: 115 AQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
A++VF + + +W +MI G + G D A+ +F +ML+ + D T V +LSA +
Sbjct: 191 ARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASS 249
>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
gi|223948835|gb|ACN28501.1| unknown [Zea mays]
Length = 599
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 71/178 (39%), Positives = 99/178 (55%), Gaps = 22/178 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 78
T +++ Y QV +AR F M +++ V W+AM+ GY RV EAL LFREMQ +
Sbjct: 165 TGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGV 224
Query: 79 RRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQR 117
DE T V +++ D+ + ALIDMY KCG +E+A+
Sbjct: 225 EPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARG 284
Query: 118 VFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
VF M+ KD W+AMIVG AI G + AL +FS+ML +R + VT++GVLSAC H+
Sbjct: 285 VFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHS 342
>gi|293336578|ref|NP_001168380.1| uncharacterized protein LOC100382149 [Zea mays]
gi|223947871|gb|ACN28019.1| unknown [Zea mays]
gi|413955892|gb|AFW88541.1| hypothetical protein ZEAMMB73_254585 [Zea mays]
Length = 651
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 71/193 (36%), Positives = 107/193 (55%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F N ++ D SW +++SGY+ G+V+ A+ F MP++D V W+AMI G + N+
Sbjct: 323 ARRLFDNGESLDHFSWNSMISGYLKNGRVEDAKALFDVMPDKDNVSWSAMIAGCVHNNQS 382
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
EAL +F M+ I+ D+ T V +++ +N I +G +L
Sbjct: 383 SEALNVFDSMRAHEIKPDDVTLVSVISACSNLSALEQGKLVHEYIRKYQYNITIVLGTSL 442
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL-D 161
IDMY KCG +E A VF + K W A+IVGLA++G +LDMFS+M + +
Sbjct: 443 IDMYMKCGCMEAALEVFDMLEEKGTPCWNAVIVGLAMNGLVTRSLDMFSEMEATGTAVPN 502
Query: 162 EVTYVGVLSACTH 174
E+T+ GVLSAC H
Sbjct: 503 EITFTGVLSACRH 515
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 63/243 (25%), Positives = 93/243 (38%), Gaps = 83/243 (34%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPER----------------------------- 45
D +SW TI++ Y+ G V+ A + F +MPER
Sbjct: 171 DAVSWNTILATYVRDGDVEQAVKVFTRMPERSAAAVSAMVALFARRGMVEEARGVFDGAE 230
Query: 46 --DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTF-------NNDI 96
D WTAM+ + R + F EAL +F +M+ DE V ++ N ++
Sbjct: 231 HRDAFTWTAMVSCFERNDLFMEALAVFSDMREEGWPVDEAVMVSVVAACAKSGVIQNGEV 290
Query: 97 FVGI--------------ALIDMYCKCGDVEKAQRVF----------WK----------- 121
G+ LI MY C DV A+R+F W
Sbjct: 291 CHGLVVRAGLGSRVNVQNVLIHMYSSCQDVVAARRLFDNGESLDHFSWNSMISGYLKNGR 350
Query: 122 ----------MLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
M KD +W+AMI G + AL++F M I+ D+VT V V+SA
Sbjct: 351 VEDAKALFDVMPDKDNVSWSAMIAGCVHNNQSSEALNVFDSMRAHEIKPDDVTLVSVISA 410
Query: 172 CTH 174
C++
Sbjct: 411 CSN 413
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 58/143 (40%), Gaps = 18/143 (12%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G V AR+ F P D V W ++ Y+R +A+ +F M +
Sbjct: 155 GCVASARRVFDAGPVWDAVSWNTILATYVRDGDVEQAVKVFTRMPERSAAAVSAMVA--- 211
Query: 90 TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDM 149
++ + G VE+A+ VF +D FTWTAM+ + AL +
Sbjct: 212 ---------------LFARRGMVEEARGVFDGAEHRDAFTWTAMVSCFERNDLFMEALAV 256
Query: 150 FSQMLRASIRLDEVTYVGVLSAC 172
FS M +DE V V++AC
Sbjct: 257 FSDMREEGWPVDEAVMVSVVAAC 279
Score = 37.7 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 67/151 (44%), Gaps = 15/151 (9%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER-DYVLWTAMIDGYLRVNR 62
+L++FG +++ + + T++ + +G + +A MP D +
Sbjct: 62 SLQLFGLVRSPNAFTCNTLLKAALRQGFPHLCFPLYASMPAAPDTYTHPLLAAACAARGD 121
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM 122
RE L ++ + +++ F++++++ AL+ MY CG V A+RVF
Sbjct: 122 VREGL----QVHSHSVKHG----------FSDNLYLRNALMHMYSACGCVASARRVFDAG 167
Query: 123 LRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
D +W ++ G + A+ +F++M
Sbjct: 168 PVWDAVSWNTILATYVRDGDVEQAVKVFTRM 198
>gi|354805230|gb|AER41645.1| CRR4 [Oryza punctata]
Length = 632
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 100/193 (51%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M KDV+SWT +VS Y G +D A++ F MP ++ V W AMI GY +R+
Sbjct: 262 ARSVFDRMDQKDVVSWTAMVSAYAKIGDLDTAKELFDHMPVKNLVSWNAMITGYNHNSRY 321
Query: 64 REALTLFREMQTSN-IRRDEFTTVRILTTFNN---------------------DIFVGIA 101
EAL F+ M R DE T V +++ + +G A
Sbjct: 322 DEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNTHLTVALGNA 381
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDM+ KCGDV +AQ +F+KM + TWT MI G A +G AL +++ M R + LD
Sbjct: 382 LIDMFAKCGDVGRAQSIFYKMETRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELD 441
Query: 162 EVTYVGVLSACTH 174
++ L+ACTH
Sbjct: 442 GTVFIAALAACTH 454
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 83/183 (45%), Gaps = 14/183 (7%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE 65
++F M +KDV+SW +IV Y++ G A F MPER+ V W ++ G+ R
Sbjct: 171 QVFDEMVDKDVVSWNSIVGVYMSSGDATGAMGLFEAMPERNVVSWNTVVAGFARTGDMVT 230
Query: 66 ALTLFREMQTSNIRRDEFTTVRILTTFN-------------NDIFVGIALIDMYCKCGDV 112
A T+F M + N T+ + D+ A++ Y K GD+
Sbjct: 231 ARTVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIGDL 290
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS-QMLRASIRLDEVTYVGVLSA 171
+ A+ +F M K+ +W AMI G + D AL F ML R DE T V V+SA
Sbjct: 291 DTAKELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSA 350
Query: 172 CTH 174
C
Sbjct: 351 CAQ 353
Score = 35.4 bits (80), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 92 FNNDIFVGIALIDMYCKC-----GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTA 146
F +D+FV AL+D+Y +C G V A++VF +M+ KD +W +++ SG A
Sbjct: 141 FGSDVFVQNALMDVYYRCGGGGAGGVGAARQVFDEMVDKDVVSWNSIVGVYMSSGDATGA 200
Query: 147 LDMFSQM 153
+ +F M
Sbjct: 201 MGLFEAM 207
>gi|225450622|ref|XP_002278152.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09190
[Vitis vinifera]
Length = 485
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 101/193 (52%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M ++DVI W ++ G+ G +++ + F QM +R V W +MI G + R
Sbjct: 161 AKKVFDEMLDRDVIVWNMMIRGFCKVGDIEMGFRLFRQMRDRSVVSWNSMIAGLEQSGRD 220
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT----------------------FNNDIFVGIA 101
EAL LFREM D+ T V IL + I VG +
Sbjct: 221 GEALELFREMWDHGFEPDDATVVTILPVCARLGAVDVGEWIHSYAESSRLLRDFISVGNS 280
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+D YCKCG +E A RVF +M +K+ +W AMI GL +G G+ D+F +M+ +R +
Sbjct: 281 LVDFYCKCGILETAWRVFNEMPQKNVVSWNAMISGLTFNGKGELGADLFEEMINKGVRPN 340
Query: 162 EVTYVGVLSACTH 174
+ T+VGVLS C H
Sbjct: 341 DATFVGVLSCCAH 353
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 83/214 (38%), Gaps = 54/214 (25%)
Query: 12 KNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFR 71
++ ++S V G +++ + A F Q + +L+ +MI GY +L LF
Sbjct: 39 QSNQILSHFISVCGALDK--MGYANLVFHQTQNPNLLLFNSMIKGYSLCGPSENSLLLFS 96
Query: 72 EMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCG 110
+M+ I DEFT +L + F + I +ID+Y CG
Sbjct: 97 QMKNRGIWPDEFTFAPLLKSCSGICDNRIGKGVHGVVIVVGFERFSSIRIGIIDLYTSCG 156
Query: 111 DVEKAQRVFWKMLRKDKF-------------------------------TWTAMIVGLAI 139
+E A++VF +ML +D +W +MI GL
Sbjct: 157 RMEDAKKVFDEMLDRDVIVWNMMIRGFCKVGDIEMGFRLFRQMRDRSVVSWNSMIAGLEQ 216
Query: 140 SGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
SG AL++F +M D+ T V +L C
Sbjct: 217 SGRDGEALELFREMWDHGFEPDDATVVTILPVCA 250
>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 642
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 104/192 (54%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A + F M NK+VISW ++ GYI G + AR F QMP ++ V W+ MI GY R +
Sbjct: 279 AKDFFDRMPNKNVISWGIMLDGYIKNGDTNGARCLFDQMPMKNLVTWSTMIGGYARNGQP 338
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFN---------------------NDIFVGIAL 102
+AL LF + +I+ DE + I++ + +D+ V +L
Sbjct: 339 LKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLSDLRVFTSL 398
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG +EKA ++F KD ++ MI LA G G A+ +F +M RA+I+ D
Sbjct: 399 IDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDS 458
Query: 163 VTYVGVLSACTH 174
VT++GVL+AC H
Sbjct: 459 VTFLGVLTACNH 470
Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 101/216 (46%), Gaps = 46/216 (21%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A + F M KD++SW ++SGY N +VDIAR++F +MPER+ V WT+MI GY++
Sbjct: 155 ARQAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDM 214
Query: 64 REALTLFREMQTSNI------------------RRDEFTTVRILTTFNNDIFV------- 98
EA LF M ++ R F + I T + +I +
Sbjct: 215 AEAQVLFDSMPVKDLASWNVMVSGYMDIGDCVNARIIFGKMPIHDTGSWNIMISGFCKAG 274
Query: 99 --------------------GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLA 138
GI ++D Y K GD A+ +F +M K+ TW+ MI G A
Sbjct: 275 ELESAKDFFDRMPNKNVISWGI-MLDGYIKNGDTNGARCLFDQMPMKNLVTWSTMIGGYA 333
Query: 139 ISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+G AL++F + I+ DE +G++SAC+
Sbjct: 334 RNGQPLKALELFERFKEQDIKPDETFILGIISACSQ 369
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 21/149 (14%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT 85
Y G D A + F ++ + + LWT++I GY+ ++ EA +LF +M+ I FT
Sbjct: 45 YSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTI 104
Query: 86 VRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124
+L F D+ V +++D++ +C V+ A++ F +M
Sbjct: 105 SSVLKALARLTRFKGGQAVYGFVLKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCE 164
Query: 125 KDKFTWTAMIVGLAISGHGDTALDMFSQM 153
KD +W MI G + D A F +M
Sbjct: 165 KDIVSWNMMISGYGNNDRVDIARKFFDRM 193
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%)
Query: 97 FVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156
FV L+ +Y + G + A +VF ++ + + + WT++I G + D A +F QM R
Sbjct: 36 FVINKLLRLYSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRRE 95
Query: 157 SIRLDEVTYVGVLSA 171
I + T VL A
Sbjct: 96 PISVLNFTISSVLKA 110
>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 606
Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 64/167 (38%), Positives = 96/167 (57%), Gaps = 21/167 (12%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G ++ AR+ F +MP+ D V W+AMI GY RV R EA+ LFREMQ + + DE T V +L
Sbjct: 182 GGINSARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSML 241
Query: 90 TT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
+ + + V ALIDM+ KCGD+ KA ++F M K
Sbjct: 242 SACTDLGALELGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIV 301
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
+WT++IVG+A+ G G A +F +M + + D+V ++G+LSAC+H+
Sbjct: 302 SWTSVIVGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHS 348
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 92 FNNDIFVGIALIDMY-CKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMF 150
F+ DI V ++ MY C G + A++VF +M + D TW+AMI G A G A+ +F
Sbjct: 163 FDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALF 222
Query: 151 SQMLRASIRLDEVTYVGVLSACT 173
+M A + DE+T V +LSACT
Sbjct: 223 REMQMAEVCPDEITMVSMLSACT 245
Score = 43.5 bits (101), Expect = 0.033, Method: Composition-based stats.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 24/160 (15%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G + A + F M E+ V WT++I G R +EA LF EM +S + D+ + +L
Sbjct: 283 GDISKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLL 342
Query: 90 TTFNNDIFVGIA----------------------LIDMYCKCGDVEKAQRVFWKMLRKDK 127
+ ++ V ++DMYC+ G V++A M +
Sbjct: 343 SACSHSGLVERGREYFGSMMKKYKLVPKIEHYGCMVDMYCRTGLVKEALEFVRNMPIEPN 402
Query: 128 FTWTAMIVGLAISGHGDTAL-DMFSQMLRASIRLDEVTYV 166
+V A GHG+ L + +++L L E YV
Sbjct: 403 PVILRTLVS-ACRGHGEFKLGEKITKLLMKHEPLHESNYV 441
>gi|255542942|ref|XP_002512534.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548495|gb|EEF49986.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 444
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 101/181 (55%), Gaps = 21/181 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D ISW +++SGY+ G+++ A+ F M ++D V W+AMI GY + +RF E L LF+EMQ
Sbjct: 224 DQISWNSMISGYLKCGEIEKAKALFDIMNDKDLVSWSAMISGYAQHDRFAETLALFQEMQ 283
Query: 75 TSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVE 113
++ DE T V +++ + ++ +G LIDMY K G VE
Sbjct: 284 LDGVKPDETTLVSVVSACTHLAALDQGKWIHLYLRKNGLKINVILGTTLIDMYMKFGCVE 343
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
A VF M K TW A+I+GLA++G +LD FS+M + +E+T+V VL AC
Sbjct: 344 DALEVFHGMKEKGVSTWNAVILGLALNGLVHMSLDTFSEMKDCGVVPNEITFVAVLVACR 403
Query: 174 H 174
H
Sbjct: 404 H 404
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 102/226 (45%), Gaps = 55/226 (24%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A ++F D++SW +I++G +G V A + F++M ++D V W+A+I GY +
Sbjct: 81 LGDARKVFDESPVLDLVSWNSILAG---KGDVTEAYRLFSEMCKKDLVSWSALISGYEQN 137
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN-------------DIFVGI------- 100
R+ EAL F +M I DE V +L+ + + +GI
Sbjct: 138 GRYEEALVTFGKMNAYGIMVDEVVVVSVLSACAHLFAVKTGKLVHSLAVKIGIESYVNLQ 197
Query: 101 -ALIDMYC-------------------------------KCGDVEKAQRVFWKMLRKDKF 128
ALI MY KCG++EKA+ +F M KD
Sbjct: 198 NALIHMYSSCREIDSAQKLFNVGYSLDQISWNSMISGYLKCGEIEKAKALFDIMNDKDLV 257
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+W+AMI G A L +F +M ++ DE T V V+SACTH
Sbjct: 258 SWSAMISGYAQHDRFAETLALFQEMQLDGVKPDETTLVSVVSACTH 303
>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Glycine max]
Length = 721
Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 69/195 (35%), Positives = 105/195 (53%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A E++ + +K ++ T ++SGY G V AR F +M E+D V W+AMI GY
Sbjct: 268 MHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAES 327
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
+ EAL LF EMQ I D+ T + +++ F + +
Sbjct: 328 YQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPIN 387
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMY KCG++ KA+ VF M RK+ +W++MI A+ G D+A+ +F +M +I
Sbjct: 388 NALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIE 447
Query: 160 LDEVTYVGVLSACTH 174
+ VT++GVL AC+H
Sbjct: 448 PNGVTFIGVLYACSH 462
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 56/207 (27%), Positives = 87/207 (42%), Gaps = 52/207 (25%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+ +++ Y G++ AR F +M RD V W MIDGY + + L L+ EM+TS
Sbjct: 155 SALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTE 214
Query: 80 RDEFTTVRILTTF-----------------NNDIFVG----IALIDMYCKCGD------- 111
D +L+ +N VG +L++MY CG
Sbjct: 215 PDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREV 274
Query: 112 ------------------------VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
V+ A+ +F +M+ KD W+AMI G A S AL
Sbjct: 275 YDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEAL 334
Query: 148 DMFSQMLRASIRLDEVTYVGVLSACTH 174
+F++M R I D++T + V+SAC +
Sbjct: 335 QLFNEMQRRRIVPDQITMLSVISACAN 361
Score = 62.8 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 44/83 (53%)
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
F+ D F+ ALI MY CG + A+ +F KM +D TW MI G + + H D L ++
Sbjct: 147 FHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYE 206
Query: 152 QMLRASIRLDEVTYVGVLSACTH 174
+M + D + VLSAC H
Sbjct: 207 EMKTSGTEPDAIILCTVLSACAH 229
>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 595
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 102/194 (52%), Gaps = 23/194 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F N+ +D +SW ++ GYI G V A F MP ++ V WT++I G + +
Sbjct: 142 ARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQS 201
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
EAL+L EMQ + D +LT N D +G AL
Sbjct: 202 VEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGCAL 261
Query: 103 IDMYCKCGDVEKAQRVFWKML--RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
++MY KCGD+E+A VF K+ +KD + WTAMI G AI G G AL+ F++M R IR
Sbjct: 262 VNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRP 321
Query: 161 DEVTYVGVLSACTH 174
+ +T+ VL AC++
Sbjct: 322 NSITFTAVLRACSY 335
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 78/194 (40%), Gaps = 23/194 (11%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQM-----PERDYVLWTAMIDGY 57
+A +F + + + W I+ Y N + ++A + QM P Y + ++
Sbjct: 40 YAQRVFNGITSPNTFMWNAIIRAYSNSDEPELAFLSYQQMLSSSVPHNSYT-FPFLLRAC 98
Query: 58 LRVNRFREALTLFREMQTSNIRRDEFTTVRILTTF--------NNDIFVGIA-------- 101
+ EAL + + D F +L + +F I
Sbjct: 99 RNLLAMGEALQVHGLVIKLGFGSDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWN 158
Query: 102 -LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
+ID Y K GDV+ A VF M K+ +WT++I GL +G AL + +M A L
Sbjct: 159 IMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFEL 218
Query: 161 DEVTYVGVLSACTH 174
D V +L+AC +
Sbjct: 219 DGVAIASLLTACAN 232
Score = 39.3 bits (90), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 110 GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVL 169
GD+ AQRVF + + F W A+I + S + A + QML +S+ + T+ +L
Sbjct: 36 GDLLYAQRVFNGITSPNTFMWNAIIRAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLL 95
Query: 170 SAC 172
AC
Sbjct: 96 RAC 98
>gi|225433758|ref|XP_002267783.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 636
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 107/195 (54%), Gaps = 23/195 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A + G+M K+V+SW +++ YI G+++ A+ F +MPERD V W +MI GY+++ +
Sbjct: 310 ADSLIGSMPGKNVVSWNMLIARYIRLGKIEDAKVVFQEMPERDAVSWNSMIAGYVQIKDY 369
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
AL LFREM+ +N+ + T + +L + + ++ AL
Sbjct: 370 ARALALFREMEIANVEATDITLISVLGACAETGALEIGRKIHLSLKQREYKIEGYLSNAL 429
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRA--SIRL 160
+DMY KCG + A VF ++ K W AMIV LA+ G+ + AL +FS M + R
Sbjct: 430 VDMYAKCGHLNLAWEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFSTMEMSVDGARP 489
Query: 161 DEVTYVGVLSACTHN 175
+ VT++GVL AC+H
Sbjct: 490 NRVTFIGVLIACSHK 504
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 18/161 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
++D ++V Y G +D+AR F +M E+ W MI Y ++N F A +L
Sbjct: 257 DQDCFIQNSLVYLYSQCGFLDLARCVFDEMTEKTITSWNVMISAYDQINDFDSADSLIGS 316
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA 132
M N+ ++N LI Y + G +E A+ VF +M +D +W +
Sbjct: 317 MPGKNV-----------VSWN-------MLIARYIRLGKIEDAKVVFQEMPERDAVSWNS 358
Query: 133 MIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
MI G AL +F +M A++ ++T + VL AC
Sbjct: 359 MIAGYVQIKDYARALALFREMEIANVEATDITLISVLGACA 399
>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 663
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 70/194 (36%), Positives = 106/194 (54%), Gaps = 22/194 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M +DVI+WT++V GY RG++ AR+ F MP R+ V W M+ GY+ +
Sbjct: 211 AKRVFDEMPQRDVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFY 270
Query: 64 REALTLFREMQTSN-IRRDEFTTVRILTTF-----------------NNDIF----VGIA 101
EAL F +M + ++ +E V IL+ N I + A
Sbjct: 271 NEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTA 330
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMY KCG ++ A+RVF + ++D TWT+MI GL++ G G L FS+ML + D
Sbjct: 331 LIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPD 390
Query: 162 EVTYVGVLSACTHN 175
++T +GVL+ C+H+
Sbjct: 391 DITLLGVLNGCSHS 404
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 25/157 (15%)
Query: 22 IVSGYINRGQVDIARQYFAQMPE-RDYVLWTAMIDGYLRVNRFREALTLFREMQTSN--I 78
++ YI + AR F Q P ++W MI Y + +E+L LF +M
Sbjct: 93 LIHSYIGCRNLSFARIVFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPT 152
Query: 79 RRDEFTTVRILTT----------------------FNNDIFVGIALIDMYCKCGDVEKAQ 116
D++T + T + +DIFVG +L++MY + A+
Sbjct: 153 SADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAK 212
Query: 117 RVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
RVF +M ++D TWT+++ G A+ G A ++F M
Sbjct: 213 RVFDEMPQRDVITWTSVVKGYAMRGELVRARELFDMM 249
>gi|357167426|ref|XP_003581157.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61800-like, partial [Brachypodium distachyon]
Length = 357
Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 99/192 (51%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M DV+S+ ++ GYI G++ +A + F +MP+RD V W ++ G + R+
Sbjct: 32 ACRVFDEMPAPDVVSYNALMDGYIKAGRLGLATKEFMRMPQRDAVSWGTVVAGCAKAGRW 91
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTF---------------------NNDIFVGIAL 102
EA+ LF M+ R D+ +L+ ++F+ L
Sbjct: 92 EEAVLLFDRMRWEGFRPDDIVLAAVLSCCAQLGALEKGREVHEYVRQSRPRPNVFLCTGL 151
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+D+Y KCG VE A+ VF ++ FTW A+IVGLA+ GHG L F +ML R D
Sbjct: 152 VDLYAKCGCVEIAREVFDTCPERNVFTWNALIVGLAMHGHGTVTLKYFDRMLAEGFRPDG 211
Query: 163 VTYVGVLSACTH 174
VT++GVL C+H
Sbjct: 212 VTFLGVLIGCSH 223
>gi|345505222|gb|AEN99835.1| chlororespiratory reduction 4, partial [Lepidium sativum]
Length = 597
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 72/194 (37%), Positives = 108/194 (55%), Gaps = 22/194 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +DVI+W T++ GY G + A+ F Q+P RD V + +M+ GY++
Sbjct: 255 AKDLFDVMPRRDVITWATMIDGYAKLGFIHQAKTLFDQIPHRDVVAYNSMMAGYVQNKYH 314
Query: 64 REALTLFREMQT-SNIRRDEFTTVRILTTF-----------------NNDIFVG----IA 101
EAL LF +M+ S++ DE T V +L+ F+G +A
Sbjct: 315 MEALELFIKMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHFYIVKKQFFIGGKLGVA 374
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMY KCG ++ A VF + K+ W A+I GLAI G G A DM Q+ R SI+ D
Sbjct: 375 LIDMYSKCGSIQHAMLVFKGLENKNIDHWNAIIGGLAIHGLGGPAFDMLLQIERLSIKPD 434
Query: 162 EVTYVGVLSACTHN 175
++T++GVL+AC+H+
Sbjct: 435 DITFIGVLNACSHS 448
Score = 85.1 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 57/172 (33%), Positives = 90/172 (52%), Gaps = 22/172 (12%)
Query: 4 ALEIFGNMKN--KDVISWTTIVSGYINRGQ-VDIARQYFAQMPERDYVLWTAMIDGYLRV 60
A E+F M K++ISW ++SGY V+IA + F++MPE+D + W +MIDGY++
Sbjct: 190 ARELFDLMPKEMKNLISWNCLISGYAQTSDGVNIASKLFSEMPEKDLISWNSMIDGYVKH 249
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
R +A LF M RRD T +ID Y K G + +A+ +F
Sbjct: 250 GRIEDAKDLFDVMP----RRDVITWA--------------TMIDGYAKLGFIHQAKTLFD 291
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS-IRLDEVTYVGVLSA 171
++ +D + +M+ G + + AL++F +M + S + DE T V VLSA
Sbjct: 292 QIPHRDVVAYNSMMAGYVQNKYHMEALELFIKMEKESHLSPDETTLVIVLSA 343
Score = 45.4 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 21/129 (16%)
Query: 46 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL---------------- 89
D LW A+I + R +L LF M + + D+F+ +L
Sbjct: 69 DPFLWNAVIKSHSHGTDPRRSLFLFCLMLENGVSVDKFSLSLVLKACSRLGFVKAGMXIH 128
Query: 90 -----TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGD 144
T +D+F+ LI +Y KCG + +++VF +M ++D ++ +MI G G +
Sbjct: 129 GFLRKTGLWSDLFLQNCLIGLYLKCGCLGYSRQVFDRMPQRDSVSYNSMIDGYVKCGLIE 188
Query: 145 TALDMFSQM 153
+A ++F M
Sbjct: 189 SARELFDLM 197
>gi|356553601|ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Glycine max]
Length = 534
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 65/192 (33%), Positives = 105/192 (54%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F + + DV++ +++ G G+VD +R+ F MP R V W +MI GY+R R
Sbjct: 178 ARRVFDELVDLDVVACNSMIMGLAKCGEVDKSRRLFDNMPTRTRVTWNSMISGYVRNKRL 237
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
EAL LFR+MQ + EFT V +L+ F ++ V A+
Sbjct: 238 MEALELFRKMQGERVEPSEFTMVSLLSACAHLGALKHGEWVHDYVKRGHFELNVIVLTAI 297
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMYCKCG + KA VF + W ++I+GLA++G+ A++ FS++ + ++ D
Sbjct: 298 IDMYCKCGVIVKAIEVFEASPTRGLSCWNSIIIGLALNGYERKAIEYFSKLEASDLKPDH 357
Query: 163 VTYVGVLSACTH 174
V+++GVL+AC +
Sbjct: 358 VSFIGVLTACKY 369
Score = 52.4 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 44/197 (22%), Positives = 73/197 (37%), Gaps = 52/197 (26%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G ++ A F +P + W +I G+ R + A++LF +M S++ T +
Sbjct: 72 GDINYAYLLFTTIPSPNLYCWNTIIRGFSRSSTPHLAISLFVDMLCSSVLPQRLTYPSVF 131
Query: 90 TTF---------------------NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
+ D F+ +I MY G + +A+RVF +++ D
Sbjct: 132 KAYAQLGAGYDGAQLHGRVVKLGLEKDQFIQNTIIYMYANSGLLSEARRVFDELVDLDVV 191
Query: 129 TWTAMIVGLAISGHGDT-------------------------------ALDMFSQMLRAS 157
+MI+GLA G D AL++F +M
Sbjct: 192 ACNSMIMGLAKCGEVDKSRRLFDNMPTRTRVTWNSMISGYVRNKRLMEALELFRKMQGER 251
Query: 158 IRLDEVTYVGVLSACTH 174
+ E T V +LSAC H
Sbjct: 252 VEPSEFTMVSLLSACAH 268
>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g29760, chloroplastic; Flags: Precursor
gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 67/193 (34%), Positives = 105/193 (54%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M+ KD ++WTT++ GY + AR+ MP++D V W A+I Y + +
Sbjct: 286 AKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKP 345
Query: 64 REALTLFREMQ-TSNIRRDEFTTVRILTT---------------------FNNDIFVGIA 101
EAL +F E+Q N++ ++ T V L+ + V A
Sbjct: 346 NEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSA 405
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LI MY KCGD+EK++ VF + ++D F W+AMI GLA+ G G+ A+DMF +M A+++ +
Sbjct: 406 LIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPN 465
Query: 162 EVTYVGVLSACTH 174
VT+ V AC+H
Sbjct: 466 GVTFTNVFCACSH 478
Score = 91.3 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 57/213 (26%), Positives = 100/213 (46%), Gaps = 53/213 (24%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV +++ Y + G +D A + F + E+D V W +MI+G+++ +AL LF++M+
Sbjct: 165 DVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKME 224
Query: 75 TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVE 113
+ +++ T V +L+ N ++ + A++DMY KCG +E
Sbjct: 225 SEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIE 284
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAIS-------------------------------GH 142
A+R+F M KD TWT M+ G AIS G
Sbjct: 285 DAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGK 344
Query: 143 GDTALDMFSQM-LRASIRLDEVTYVGVLSACTH 174
+ AL +F ++ L+ +++L+++T V LSAC
Sbjct: 345 PNEALIVFHELQLQKNMKLNQITLVSTLSACAQ 377
Score = 70.5 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 49/85 (57%)
Query: 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
+ + +D+FV +LI Y CGD++ A +VF + KD +W +MI G G D AL
Sbjct: 158 VKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKAL 217
Query: 148 DMFSQMLRASIRLDEVTYVGVLSAC 172
++F +M ++ VT VGVLSAC
Sbjct: 218 ELFKKMESEDVKASHVTMVGVLSAC 242
>gi|255564780|ref|XP_002523384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537334|gb|EEF38963.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 538
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 63/182 (34%), Positives = 101/182 (55%), Gaps = 21/182 (11%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
++V W +++ Y + A+ F MP+R+ + WTA+I GY +NR +A+ +FR M
Sbjct: 175 RNVALWNAMLTSYAKICDMPNAQHLFDSMPQRNLISWTALISGYAHINRPHQAIAIFRTM 234
Query: 74 QTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDV 112
Q N+ DE T + +L+ + ++ + ALIDMY K G++
Sbjct: 235 QLQNVVPDEITLLAVLSACAQLGALELGEWIRNYIDIHGLHRNVPLHNALIDMYAKSGNI 294
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
++A +F M K TWT MI GLA+ G G AL+MFS+M R ++ +E+T++ VLSAC
Sbjct: 295 KRALLIFESMKHKTIVTWTTMIAGLALHGLGTQALEMFSRMERDRVKPNEITFIAVLSAC 354
Query: 173 TH 174
+H
Sbjct: 355 SH 356
Score = 37.4 bits (85), Expect = 2.5, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYV 48
AL IF +MK+K +++WTT+++G G A + F++M ERD V
Sbjct: 297 ALLIFESMKHKTIVTWTTMIAGLALHGLGTQALEMFSRM-ERDRV 340
>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 828
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 106/192 (55%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F +M NK V++W ++++G + G++++A + F +MPE + V W MI ++ + F
Sbjct: 378 ACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMF 437
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTF-----------------NNDIFV----GIAL 102
EA+ L REMQ I+ D T V I + NDI + G AL
Sbjct: 438 EEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQLGTAL 497
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DM+ +CGD A RVF M ++D WTA I A+ G+ A+++F +ML+ ++ D+
Sbjct: 498 VDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADD 557
Query: 163 VTYVGVLSACTH 174
+V +L+A +H
Sbjct: 558 FVFVALLTAFSH 569
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 85/182 (46%), Gaps = 21/182 (11%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
KD+ +++ Y G+VD+ R+ F +M ER+ V WT++I+GY VN +EA+ LF EM
Sbjct: 155 KDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEM 214
Query: 74 QTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDV 112
+ + T V ++ ++ V AL+DMY KCGD+
Sbjct: 215 VEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDM 274
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+ +F + K+ + ++ G L + +ML+ R D+VT + ++AC
Sbjct: 275 YAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAAC 334
Query: 173 TH 174
Sbjct: 335 AQ 336
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 79/201 (39%), Gaps = 52/201 (25%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT 85
Y+ G + R+ F + +++ V++ ++ Y++ E L + EM R D+ T
Sbjct: 268 YMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTM 327
Query: 86 VRILTTFNN--DIFVGI-------------------ALIDMYCKCGDVEKAQRVFWKMLR 124
+ + D+ VG A+IDMY KCG E A +VF M
Sbjct: 328 LSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSN 387
Query: 125 KDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS--------------------------- 157
K TW ++I GL G + AL +F +M ++
Sbjct: 388 KTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREM 447
Query: 158 ----IRLDEVTYVGVLSACTH 174
I+ D VT VG+ SAC +
Sbjct: 448 QNQGIKGDRVTMVGIASACGY 468
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 85/195 (43%), Gaps = 27/195 (13%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRG---QVDIARQYFAQMPERDYVLWTA--MIDGYLRV 60
++ NM K V + +++ + G ++ A F + L+T +I GY
Sbjct: 40 QLHCNMLKKGVFNINKLIAACVQMGTHESLNYALNAFKEDEGTKCSLYTCNTLIRGYAAS 99
Query: 61 NRFREALTLFREMQ-TSNIRRDEFTTVRILTTFNN---------------------DIFV 98
+EA+ ++ M I D FT +L+ + D+FV
Sbjct: 100 GLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVVKMGLVKDLFV 159
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
+LI Y CG V+ ++VF +ML ++ +WT++I G ++ A+ +F +M+ +
Sbjct: 160 ANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGV 219
Query: 159 RLDEVTYVGVLSACT 173
+ VT V +SAC
Sbjct: 220 EPNPVTMVCAISACA 234
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 22/158 (13%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T +V + G A + F M +RD WTA I + A+ LF EM +++
Sbjct: 495 TALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVK 554
Query: 80 RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT-----WTAMI 134
D+F V +LT F++ G V++ +++FW M + + + M+
Sbjct: 555 ADDFVFVALLTAFSHG--------------GYVDQGRQLFWAMEKIHGVSPQIVHYGCMV 600
Query: 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
L +G + A D+ M I+ ++V + L+AC
Sbjct: 601 DLLGRAGLLEEAFDLMKSM---PIKPNDVIWGSFLAAC 635
>gi|413946997|gb|AFW79646.1| hypothetical protein ZEAMMB73_771020 [Zea mays]
Length = 505
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 102/192 (53%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M +DV++W +++GY+ G AR+ F MPER+ V WT +I GY ++ R
Sbjct: 132 ARSVFDEMAVRDVVAWNVMIAGYVKAGDQAHARELFDAMPERNVVSWTTVIGGYAQMKRP 191
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
+A+ +FR MQ I D + +L + +I + ++
Sbjct: 192 EKAVEVFRRMQVEGIEADGVALLSVLAACGDLGAVDLGEWVHRFVVRRGLCQEIPLMNSI 251
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG +EKA VF M K TWT +I G A+ G G A++MF +M R ++ +
Sbjct: 252 IDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQAVEMFCRMERENMAPNA 311
Query: 163 VTYVGVLSACTH 174
VT++ +LSAC+H
Sbjct: 312 VTFLAILSACSH 323
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 94 NDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+D V +L+ +YC CG V A+ VF +M +D W MI G +G A ++F M
Sbjct: 111 SDAHVSSSLVQLYCTCGHVADARSVFDEMAVRDVVAWNVMIAGYVKAGDQAHARELFDAM 170
>gi|357124715|ref|XP_003564043.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Brachypodium distachyon]
Length = 599
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 70/196 (35%), Positives = 100/196 (51%), Gaps = 24/196 (12%)
Query: 3 FALEIFGNMKNK---DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR 59
A +FG+ + DV+SWTT+V G G VD AR+ F MPER+ + W AMI GY++
Sbjct: 145 LASRLFGSCSSPGDLDVVSWTTMVGGLCRLGLVDDARKLFDGMPERNLISWNAMISGYVK 204
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFV 98
RF +AL +F +M+ I + F + D +
Sbjct: 205 AGRFLDALEVFDQMRALGIEGNGFVAASAVVACTGAGVLARGREVHRWVEQSGITMDEKL 264
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
A++DMYCKCG VE+A VF + K +W MI GLA+ G A+++F +M R +
Sbjct: 265 ATAVVDMYCKCGSVEEAWHVFKVLPTKGLTSWNCMIGGLAVHGRCKDAIELFHEMEREDV 324
Query: 159 RLDEVTYVGVLSACTH 174
D+VT V VL+AC H
Sbjct: 325 APDDVTLVNVLTACAH 340
>gi|414866864|tpg|DAA45421.1| TPA: diphthine synthase [Zea mays]
Length = 897
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 65/193 (33%), Positives = 107/193 (55%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M K+V+SW +++G+ +V+ AR F QMP R+ V WT +IDGY +
Sbjct: 253 ARKVFDEMPVKNVVSWNVMITGFAGWDEVEYARLLFDQMPCRNVVSWTGLIDGYTHACLY 312
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
EALTL R M I E + ++ +N D+ VG +L
Sbjct: 313 AEALTLLRHMMAGGISPSEIIVLAVIPAISNLGGIVMGEMLNGYCEKKGIMSDVRVGNSL 372
Query: 103 IDMYCKCGDVEKAQRVFWKML-RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
ID+Y K G V+ + +VF +ML R++ +WT++I G A+ G AL++F++M RA I+ +
Sbjct: 373 IDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPN 432
Query: 162 EVTYVGVLSACTH 174
+T++ V++ C+H
Sbjct: 433 RITFLSVINVCSH 445
Score = 37.7 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
F +V IALI++Y + +A++VF +M K+ +W MI G A + A +F
Sbjct: 230 FEFHAYVHIALINVYVMSRCLVEARKVFDEMPVKNVVSWNVMITGFAGWDEVEYARLLFD 289
Query: 152 QMLRASIRLDEVTYVGVLSACTH 174
QM ++ V++ G++ TH
Sbjct: 290 QMPCRNV----VSWTGLIDGYTH 308
>gi|414866863|tpg|DAA45420.1| TPA: hypothetical protein ZEAMMB73_079127 [Zea mays]
Length = 716
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 65/193 (33%), Positives = 107/193 (55%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M K+V+SW +++G+ +V+ AR F QMP R+ V WT +IDGY +
Sbjct: 253 ARKVFDEMPVKNVVSWNVMITGFAGWDEVEYARLLFDQMPCRNVVSWTGLIDGYTHACLY 312
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
EALTL R M I E + ++ +N D+ VG +L
Sbjct: 313 AEALTLLRHMMAGGISPSEIIVLAVIPAISNLGGIVMGEMLNGYCEKKGIMSDVRVGNSL 372
Query: 103 IDMYCKCGDVEKAQRVFWKML-RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
ID+Y K G V+ + +VF +ML R++ +WT++I G A+ G AL++F++M RA I+ +
Sbjct: 373 IDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPN 432
Query: 162 EVTYVGVLSACTH 174
+T++ V++ C+H
Sbjct: 433 RITFLSVINVCSH 445
Score = 37.7 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
F +V IALI++Y + +A++VF +M K+ +W MI G A + A +F
Sbjct: 230 FEFHAYVHIALINVYVMSRCLVEARKVFDEMPVKNVVSWNVMITGFAGWDEVEYARLLFD 289
Query: 152 QMLRASIRLDEVTYVGVLSACTH 174
QM ++ V++ G++ TH
Sbjct: 290 QMPCRNV----VSWTGLIDGYTH 308
>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Glycine max]
Length = 747
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 107/192 (55%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A + F M K+V+ + T+++G + +++ +RQ F M E+D + WTAMI G+ +
Sbjct: 196 ARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLD 255
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
REA+ LFREM+ N+ D++T +LT + ++IFVG AL
Sbjct: 256 REAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSAL 315
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMYCKC ++ A+ VF KM K+ +WTAM+VG +G+ + A+ +F M I D+
Sbjct: 316 VDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDD 375
Query: 163 VTYVGVLSACTH 174
T V+S+C +
Sbjct: 376 FTLGSVISSCAN 387
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 21/175 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+ +V Y + A F +M ++ V WTAM+ GY + EA+ +F +MQ + I
Sbjct: 313 SALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIE 372
Query: 80 RDEFTTVRILTTFNND---------------------IFVGIALIDMYCKCGDVEKAQRV 118
D+FT ++++ N I V AL+ +Y KCG +E + R+
Sbjct: 373 PDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRL 432
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
F +M D+ +WTA++ G A G + L +F ML + D+VT++GVLSAC+
Sbjct: 433 FSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACS 487
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 95/223 (42%), Gaps = 53/223 (23%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
+A +F M +++ SW T++S Y + + F MP RD V W ++I Y
Sbjct: 62 YARRVFDQMPQRNLYSWNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGF 121
Query: 63 FREALTLFREMQTS---NIRRDEFTTVRILTT-------------------FNNDIFVGI 100
+++ + M + N+ R +T+ IL + F + +FVG
Sbjct: 122 LLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGS 181
Query: 101 ALIDMYCK-------------------------------CGDVEKAQRVFWKMLRKDKFT 129
L+DMY K C +E ++++F+ M KD +
Sbjct: 182 PLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSIS 241
Query: 130 WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
WTAMI G +G A+D+F +M ++ +D+ T+ VL+AC
Sbjct: 242 WTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTAC 284
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 18/133 (13%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP----ERDYVLWTAMIDGYLRVNR 62
+F M D +SWT +VSGY G+ + + F M + D V + ++ R
Sbjct: 432 LFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGL 491
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM 122
++ +F M I+ + T +ID++ + G +E+A++ KM
Sbjct: 492 VQKGNQIFESM----IKEHRIIPIEDHYT---------CMIDLFSRAGRLEEARKFINKM 538
Query: 123 -LRKDKFTWTAMI 134
D W +++
Sbjct: 539 PFSPDAIGWASLL 551
>gi|297793123|ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310281|gb|EFH40705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 531
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 107/197 (54%), Gaps = 23/197 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYL 58
+G A ++F M+ +DV W +++GY G++D AR MP R+ V WT +I GY
Sbjct: 167 LGDARKVFDEMRVRDVNVWNALLAGYGKVGEMDEARGLLEMMPCWVRNAVSWTCVISGYA 226
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIF 97
R R EA+ +F+ M N+ DE T + +L+ N +
Sbjct: 227 RSGRASEAIEVFQRMLMENVDPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVS 286
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
+ A+IDMY K G++ KA VF + ++ TWT +I GLA GHG AL MF +M++A
Sbjct: 287 LNNAVIDMYAKSGNITKALEVFESVNERNVVTWTTIITGLATHGHGAEALVMFDRMVKAG 346
Query: 158 IRLDEVTYVGVLSACTH 174
++ ++VT++ +LSAC+H
Sbjct: 347 VKPNDVTFIAILSACSH 363
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 81/218 (37%), Gaps = 57/218 (26%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV---NRFREALTL 69
N+D ++ + N G + A F P + L MI V N A+T+
Sbjct: 44 NRDNLNVAKFIEACSNAGHLRYAYSVFTHQPFPNTYLHNTMIRALSLVDERNAHSIAITV 103
Query: 70 FREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCK 108
+R+ + D FT +L F++ + V LI MY
Sbjct: 104 YRKFWAFCAKPDTFTFPFVLKIVVRVSDVWFGRQVHGQAVVFGFDSSVHVVTGLIQMYSS 163
Query: 109 CGDVEKAQRVFWKMLRKD---------------------------------KFTWTAMIV 135
CG + A++VF +M +D +WT +I
Sbjct: 164 CGGLGDARKVFDEMRVRDVNVWNALLAGYGKVGEMDEARGLLEMMPCWVRNAVSWTCVIS 223
Query: 136 GLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
G A SG A+++F +ML ++ DEVT + VLSAC
Sbjct: 224 GYARSGRASEAIEVFQRMLMENVDPDEVTLLAVLSACA 261
>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 535
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 68/193 (35%), Positives = 102/193 (52%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M+ ++V SW ++SGY G V AR+ F MP +D V W AM+ Y V +
Sbjct: 195 ARALFDEMEERNVESWNFMISGYAAAGLVKEAREVFDSMPVKDVVSWNAMVTAYAHVGCY 254
Query: 64 REALTLFREMQTSNIRR-DEFTTVRILTTFNN---------------------DIFVGIA 101
E L +F M + R D FT V +L+ + + FV A
Sbjct: 255 NEVLEVFNMMLDDSAERPDGFTLVNVLSACASLGSLSQGEWVHVYIDKHGIEIEGFVATA 314
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+DMY KCG ++KA VF ++D TW ++I GL++ G G AL++FS+M+ + +
Sbjct: 315 LVDMYSKCGKIDKALEVFRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEMVYEGFKPN 374
Query: 162 EVTYVGVLSACTH 174
+T++GVLSAC H
Sbjct: 375 GITFIGVLSACNH 387
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 53/159 (33%), Positives = 74/159 (46%), Gaps = 19/159 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV T+++ Y G +IAR+ +MP RD V W +++ YL EA LF EM+
Sbjct: 144 DVFVENTLINVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLDKGLVEEARALFDEME 203
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
N+ F +I Y G V++A+ VF M KD +W AM+
Sbjct: 204 ERNVESWNF------------------MISGYAAAGLVKEAREVFDSMPVKDVVSWNAMV 245
Query: 135 VGLAISGHGDTALDMFSQMLRASI-RLDEVTYVGVLSAC 172
A G + L++F+ ML S R D T V VLSAC
Sbjct: 246 TAYAHVGCYNEVLEVFNMMLDDSAERPDGFTLVNVLSAC 284
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 21/123 (17%)
Query: 52 AMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL---------------------T 90
++I Y + ALT+FREM + D+++ +L +
Sbjct: 80 SVIRAYANSSTPEIALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFMKS 139
Query: 91 TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMF 150
D+FV LI++Y + G E A++V +M +D +W +++ G + A +F
Sbjct: 140 DLVTDVFVENTLINVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLDKGLVEEARALF 199
Query: 151 SQM 153
+M
Sbjct: 200 DEM 202
>gi|356541012|ref|XP_003538978.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g50270-like [Glycine max]
Length = 560
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 62/177 (35%), Positives = 104/177 (58%), Gaps = 21/177 (11%)
Query: 19 WTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 78
++ ++ Y G + A + F ++P RD V WT ++ GY++ N+F++AL F +M + N+
Sbjct: 247 FSALMDMYFKCGHCEDACKVFNELPHRDVVCWTVLVAGYVQSNKFQDALRAFWDMLSDNV 306
Query: 79 RRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQR 117
++FT +L+ N ++ +G AL+DMY KCG +++A R
Sbjct: 307 APNDFTLSSVLSACAQMGALDQGRLVHQYIECNKINMNVTLGTALVDMYAKCGSIDEALR 366
Query: 118 VFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
VF M K+ +TWT +I GLA+ G AL++F ML++ I+ +EVT+VGVL+AC+H
Sbjct: 367 VFENMPVKNVYTWTVIINGLAVHGDALGALNIFCCMLKSGIQPNEVTFVGVLAACSH 423
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 61/197 (30%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 1 MGFALEIF-GNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR 59
+GF L++F GN ++ + N G V+ ARQ F + P +D V WTA+I+GY++
Sbjct: 136 LGFDLDLFIGN----------ALIPAFANSGFVESARQVFDESPFQDTVAWTALINGYVK 185
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTT----------------------FNNDIF 97
+ EAL F +M+ + D T IL D +
Sbjct: 186 NDCPGEALKCFVKMRLRDRSVDAVTVASILRAAALVGDADFGRWVHGFYVEAGRVQLDGY 245
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
V AL+DMY KCG E A +VF ++ +D WT ++ G S AL F ML +
Sbjct: 246 VFSALMDMYFKCGHCEDACKVFNELPHRDVVCWTVLVAGYVQSNKFQDALRAFWDMLSDN 305
Query: 158 IRLDEVTYVGVLSACTH 174
+ ++ T VLSAC
Sbjct: 306 VAPNDFTLSSVLSACAQ 322
Score = 41.6 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 42/89 (47%)
Query: 10 NMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 69
N N +V T +V Y G +D A + F MP ++ WT +I+G AL +
Sbjct: 339 NKINMNVTLGTALVDMYAKCGSIDEALRVFENMPVKNVYTWTVIINGLAVHGDALGALNI 398
Query: 70 FREMQTSNIRRDEFTTVRILTTFNNDIFV 98
F M S I+ +E T V +L ++ FV
Sbjct: 399 FCCMLKSGIQPNEVTFVGVLAACSHGGFV 427
>gi|2583119|gb|AAB82628.1| hypothetical protein [Arabidopsis thaliana]
Length = 606
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 70/191 (36%), Positives = 108/191 (56%), Gaps = 22/191 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M +DV++W T++ GY G V A+ F QMP RD V + +M+ GY++ EA
Sbjct: 267 LFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEA 326
Query: 67 LTLFREMQT-SNIRRDEFTTV----------RILTTFNNDIFV-----------GIALID 104
L +F +M+ S++ D+ T V R+ + +++ G+ALID
Sbjct: 327 LEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALID 386
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVT 164
MY KCG ++ A VF + K W AMI GLAI G G++A DM Q+ R S++ D++T
Sbjct: 387 MYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDDIT 446
Query: 165 YVGVLSACTHN 175
+VGVL+AC+H+
Sbjct: 447 FVGVLNACSHS 457
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 58/163 (35%), Positives = 85/163 (52%), Gaps = 20/163 (12%)
Query: 11 MKNKDVISWTTIVSGYINRGQ-VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 69
M+ K++ISW +++SGY VDIA + FA MPE+D + W +MIDGY++ R +A L
Sbjct: 208 MEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGL 267
Query: 70 FREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT 129
F M RRD T +ID Y K G V A+ +F +M +D
Sbjct: 268 FDVMP----RRDVVTWA--------------TMIDGYAKLGFVHHAKTLFDQMPHRDVVA 309
Query: 130 WTAMIVGLAISGHGDTALDMFSQMLRASIRL-DEVTYVGVLSA 171
+ +M+ G + + AL++FS M + S L D+ T V VL A
Sbjct: 310 YNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPA 352
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 23/176 (13%)
Query: 1 MGF---ALEIFGNMKN----KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAM 53
+GF ++I G +K D+ ++ Y+ G + ++RQ F +MP+RD V + +M
Sbjct: 127 LGFVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSM 186
Query: 54 IDGYLRVNRFREALTLF--REMQTSN-IRRDEFTTVRILTTFNNDIFVGI---------- 100
IDGY++ A LF M+ N I + + T+ DI +
Sbjct: 187 IDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLI 246
Query: 101 ---ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
++ID Y K G +E A+ +F M R+D TW MI G A G A +F QM
Sbjct: 247 SWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQM 302
Score = 37.7 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 21/129 (16%)
Query: 46 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL---------------- 89
D LW A+I + R+AL L M + + D+F+ +L
Sbjct: 78 DPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIH 137
Query: 90 -----TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGD 144
T +D+F+ LI +Y KCG + ++++F +M ++D ++ +MI G G
Sbjct: 138 GFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIV 197
Query: 145 TALDMFSQM 153
+A ++F M
Sbjct: 198 SARELFDLM 206
>gi|359476090|ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Vitis vinifera]
Length = 515
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 104/192 (54%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M +D +SW T++SG++ GQ+ AR F ++ ++ WTA++ GY R+
Sbjct: 145 AHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEELQDKTIFSWTAIVSGYARIGCH 204
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
AL FR MQ +I DE + V +L F DI V AL
Sbjct: 205 AVALEFFRRMQMVDIELDEISLVSVLPACAQLGALELGKWIHIYADKAGFLRDICVCNAL 264
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I++Y K G +++ +R+F KM +D +W+ MIVGLA G A+++F +M +A + +
Sbjct: 265 IEVYAKRGSMDEGRRLFHKMNERDVISWSTMIVGLANHGRAREAIELFQEMQKAKVEPNI 324
Query: 163 VTYVGVLSACTH 174
+T+VG+LSAC H
Sbjct: 325 ITFVGLLSACAH 336
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 84/211 (39%), Gaps = 57/211 (27%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-----Q 74
T +V + G+ + A F ++ + + L+ AMI Y + A+T+ ++M
Sbjct: 24 TKMVDMCNHHGETEYANLLFKRVADPNAFLYNAMIRAYKHNKVYILAITVHKQMLGHSHG 83
Query: 75 TSNIRRDEFTTVRI------LTTFN---------------NDIFVGIALIDMYCKCGDVE 113
+ D+FT + L +N ++ + +L++MY KC ++
Sbjct: 84 ENPXFPDKFTFPFVVKXCAGLMCYNLGKQVHGHAFKFGPKSNTVIENSLVEMYVKCDSLD 143
Query: 114 KAQRVFWKMLRKDK-------------------------------FTWTAMIVGLAISGH 142
A RVF +M +D F+WTA++ G A G
Sbjct: 144 DAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEELQDKTIFSWTAIVSGYARIGC 203
Query: 143 GDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
AL+ F +M I LDE++ V VL AC
Sbjct: 204 HAVALEFFRRMQMVDIELDEISLVSVLPACA 234
>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 101/182 (55%), Gaps = 21/182 (11%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
++V T+++ Y+ G ++ A F+ MPE+D V W+ MI GY ++AL LF +M
Sbjct: 248 RNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQM 307
Query: 74 QTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDV 112
Q+ N++ D +T V +L+ F ++ +G ALIDMY KCG V
Sbjct: 308 QSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSV 367
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+A +F M RKD+ W AM+VGL+++GH +FS + + IR DE T++G+L C
Sbjct: 368 TQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGC 427
Query: 173 TH 174
TH
Sbjct: 428 TH 429
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 98/182 (53%), Gaps = 21/182 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ DV T+++S Y+ D A + F +P+++ V WTA+I GY+ FREA+ F++
Sbjct: 146 DHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKK 205
Query: 73 MQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIALIDMYCKCGD 111
+ ++ D F+ V++L + ++FV +L+DMY KCG+
Sbjct: 206 LLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGN 265
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+E+A +F M KD +W+ MI G A +G ALD+F QM +++ D T VGVLSA
Sbjct: 266 LERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSA 325
Query: 172 CT 173
C
Sbjct: 326 CA 327
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 21/173 (12%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
I+ ++ G + ++ F+Q+ E + LW MI G + + F +A+ L+ M+ +
Sbjct: 54 ILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPN 113
Query: 82 EFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
FT +L +++D+FV +L+ +Y KC + + A +VF
Sbjct: 114 NFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFD 173
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+ K+ +WTA+I G SGH A+ F ++L ++ D + V VL+AC
Sbjct: 174 DIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACA 226
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 27/166 (16%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T ++ Y G V A + F M +D V+W AM+ G + +LF ++ IR
Sbjct: 355 TALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIR 414
Query: 80 RDEFTTVRILTTFNNDIFVGIA----------------------LIDMYCKCGDVEKAQR 117
DE T + +L + FV ++D+ + G + +A +
Sbjct: 415 PDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQ 474
Query: 118 VFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+ M ++ + W A++ G + H DT L Q+L+ I L+
Sbjct: 475 LINNMPMKPNAVVWGALLGGCKL--HKDTHLA--EQVLKKLIELEP 516
>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 741
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 64/192 (33%), Positives = 107/192 (55%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F ++DV+S+T ++ GY +RG ++ A++ F ++P +D V W AMI GY +
Sbjct: 188 ARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNY 247
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
+EAL LF+EM +NIR DE T V +++ F +++ + +L
Sbjct: 248 KEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSL 307
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+D+Y KCG++E A +F +L KD +W +I G AL +F +MLR+ R ++
Sbjct: 308 MDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPND 367
Query: 163 VTYVGVLSACTH 174
VT + +L AC H
Sbjct: 368 VTMLSILPACAH 379
Score = 112 bits (279), Expect = 8e-23, Method: Composition-based stats.
Identities = 60/173 (34%), Positives = 91/173 (52%), Gaps = 23/173 (13%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT 85
Y G+++ A F + +D + W +I GY +N ++EAL LF+EM S R ++ T
Sbjct: 311 YSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTM 370
Query: 86 VRIL-----------------------TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM 122
+ IL + N + +LIDMY KCGD+E A +VF +
Sbjct: 371 LSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSI 430
Query: 123 LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
L K +W AMI G A+ G D A D+FS+M + I D++T+VG+LSAC+ +
Sbjct: 431 LHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRS 483
Score = 69.3 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 49/161 (30%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ T+++S Y+ G+++ AR+ F + P RD V +T
Sbjct: 168 DLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYT----------------------- 204
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
ALI Y G +E AQ++F ++ KD +W AMI
Sbjct: 205 --------------------------ALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMI 238
Query: 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
G A +G+ AL++F +M++ +IR DE T V V+SAC +
Sbjct: 239 SGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQS 279
>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
Length = 686
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 101/193 (52%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M N+DV+ W T++ GY G V+ F +MPER+ W A+I GY F
Sbjct: 315 ARKLFXEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLF 374
Query: 64 REALTLFREMQT-SNIRRDEFTTVRILTT---------------------FNNDIFVGIA 101
E L F+ M + S++ ++ T V +L+ +++VG A
Sbjct: 375 FEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNA 434
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+DMY KCG +E A VF M KD +W +I GLA+ G AL++F QM A + D
Sbjct: 435 LMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPD 494
Query: 162 EVTYVGVLSACTH 174
+T++G+L ACTH
Sbjct: 495 GITFIGILCACTH 507
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 87/174 (50%), Gaps = 19/174 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A +IF M ++V++WT++++GYI + AR+ F PERD VLW M+ GY+
Sbjct: 250 VGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEG 309
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
EA LF EM N D+ ++ Y G+VE + +F
Sbjct: 310 GDMVEARKLFXEMP------------------NRDVMFWNTVLKGYATNGNVEALEGLFE 351
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS-IRLDEVTYVGVLSACT 173
+M ++ F+W A+I G A +G L F +ML S + ++ T V VLSAC
Sbjct: 352 EMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACA 405
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 66/137 (48%), Gaps = 21/137 (15%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT--- 91
ARQ F Q+P+ + LW +M GY + +RE + LF +M+ +IR + FT +L +
Sbjct: 152 ARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGK 211
Query: 92 ------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
F + FVG LIDMY G V A ++F +M ++ WT+M
Sbjct: 212 INALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSM 271
Query: 134 IVGLAISGHGDTALDMF 150
I G +S +A +F
Sbjct: 272 INGYILSADLVSARRLF 288
>gi|334184919|ref|NP_182060.2| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
gi|218546767|sp|O22137.2|PP202_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g45350, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 4; Flags: Precursor
gi|330255448|gb|AEC10542.1| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
Length = 613
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 70/191 (36%), Positives = 108/191 (56%), Gaps = 22/191 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M +DV++W T++ GY G V A+ F QMP RD V + +M+ GY++ EA
Sbjct: 274 LFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEA 333
Query: 67 LTLFREMQT-SNIRRDEFTTV----------RILTTFNNDIFV-----------GIALID 104
L +F +M+ S++ D+ T V R+ + +++ G+ALID
Sbjct: 334 LEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALID 393
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVT 164
MY KCG ++ A VF + K W AMI GLAI G G++A DM Q+ R S++ D++T
Sbjct: 394 MYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDDIT 453
Query: 165 YVGVLSACTHN 175
+VGVL+AC+H+
Sbjct: 454 FVGVLNACSHS 464
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 58/163 (35%), Positives = 85/163 (52%), Gaps = 20/163 (12%)
Query: 11 MKNKDVISWTTIVSGYINRGQ-VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 69
M+ K++ISW +++SGY VDIA + FA MPE+D + W +MIDGY++ R +A L
Sbjct: 215 MEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGL 274
Query: 70 FREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT 129
F M RRD T +ID Y K G V A+ +F +M +D
Sbjct: 275 FDVMP----RRDVVTWA--------------TMIDGYAKLGFVHHAKTLFDQMPHRDVVA 316
Query: 130 WTAMIVGLAISGHGDTALDMFSQMLRASIRL-DEVTYVGVLSA 171
+ +M+ G + + AL++FS M + S L D+ T V VL A
Sbjct: 317 YNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPA 359
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 23/176 (13%)
Query: 1 MGF---ALEIFGNMKN----KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAM 53
+GF ++I G +K D+ ++ Y+ G + ++RQ F +MP+RD V + +M
Sbjct: 134 LGFVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSM 193
Query: 54 IDGYLRVNRFREALTLF--REMQTSN-IRRDEFTTVRILTTFNNDIFVGI---------- 100
IDGY++ A LF M+ N I + + T+ DI +
Sbjct: 194 IDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLI 253
Query: 101 ---ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
++ID Y K G +E A+ +F M R+D TW MI G A G A +F QM
Sbjct: 254 SWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQM 309
Score = 37.7 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 21/129 (16%)
Query: 46 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL---------------- 89
D LW A+I + R+AL L M + + D+F+ +L
Sbjct: 85 DPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIH 144
Query: 90 -----TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGD 144
T +D+F+ LI +Y KCG + ++++F +M ++D ++ +MI G G
Sbjct: 145 GFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIV 204
Query: 145 TALDMFSQM 153
+A ++F M
Sbjct: 205 SARELFDLM 213
>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 1024
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 101/193 (52%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F M KDV SWT++V+GY G ++ AR++F Q P ++ V W+AMI GY + N+
Sbjct: 412 ARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKP 471
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN----------------------DIFVGIA 101
+E+L LF EM + E T V +L+ + + A
Sbjct: 472 KESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENA 531
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
++DMY KCG ++ A VF M ++ +W MI G A +G A+++F QM +
Sbjct: 532 IVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPN 591
Query: 162 EVTYVGVLSACTH 174
+T+V +L+AC+H
Sbjct: 592 NITFVSLLTACSH 604
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 87/203 (42%), Gaps = 52/203 (25%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
++ Y RG + ARQ F + ++D V WT MIDGY + EA+ +F M S++ +
Sbjct: 298 LIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPN 357
Query: 82 EFTTVRILTTFNN----------------------------------------------- 94
E T + +++ ++
Sbjct: 358 EVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFD 417
Query: 95 -----DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDM 149
D++ ++++ Y KCGD+E A+R F + RK+ W+AMI G + + +L +
Sbjct: 418 RMATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKL 477
Query: 150 FSQMLRASIRLDEVTYVGVLSAC 172
F +M+ + E T V VLSAC
Sbjct: 478 FHEMMERGVVPIEHTLVSVLSAC 500
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 81/177 (45%), Gaps = 18/177 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ +A IF ++ + W T++ GY N + A +F M + LRV
Sbjct: 207 LHYAHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQ-------------LRV 253
Query: 61 N----RFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQ 116
F AL ++ +T + V F+ ++ V LI Y + G ++ A+
Sbjct: 254 EMDSRSFVFALKACQQFETV-FEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNAR 312
Query: 117 RVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+VF + KD TWT MI G A + A+++F ML + + +EVT + V+SAC+
Sbjct: 313 QVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACS 369
>gi|15241180|ref|NP_200442.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171630|sp|Q9FMA1.1|PP433_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g56310
gi|10177829|dbj|BAB11258.1| unnamed protein product [Arabidopsis thaliana]
gi|332009364|gb|AED96747.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 530
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 107/197 (54%), Gaps = 23/197 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYL 58
+G A ++F M KDV W +++GY G++D AR MP R+ V WT +I GY
Sbjct: 167 LGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYA 226
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIF 97
+ R EA+ +F+ M N+ DE T + +L+ N +
Sbjct: 227 KSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVS 286
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
+ A+IDMY K G++ KA VF + ++ TWT +I GLA GHG AL MF++M++A
Sbjct: 287 LNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAG 346
Query: 158 IRLDEVTYVGVLSACTH 174
+R ++VT++ +LSAC+H
Sbjct: 347 VRPNDVTFIAILSACSH 363
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 85/218 (38%), Gaps = 57/218 (26%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYL---RVNRFREALTL 69
N+D ++ + N G + A F P + L MI N A+T+
Sbjct: 44 NRDNLNVAKFIEACSNAGHLRYAYSVFTHQPCPNTYLHNTMIRALSLLDEPNAHSIAITV 103
Query: 70 FREMQTSNIRRDEFT-------TVRI--------------LTTFNNDIFVGIALIDMYCK 108
+R++ + D FT VR+ + F++ + V LI MY
Sbjct: 104 YRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFS 163
Query: 109 CGDVEKAQRVFWKMLRKD---------------------------------KFTWTAMIV 135
CG + A+++F +ML KD + +WT +I
Sbjct: 164 CGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVIS 223
Query: 136 GLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
G A SG A+++F +ML ++ DEVT + VLSAC
Sbjct: 224 GYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACA 261
>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 681
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 65/193 (33%), Positives = 105/193 (54%), Gaps = 23/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M ++ +SW +++GY+ G + A++ F QMPER V W +MI GY R +F
Sbjct: 230 ARDVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQF 289
Query: 64 REALTLFREMQTSNIRRDEFTTVR----------------------ILTTFNNDIFVGIA 101
+AL LF M +I + +TT+ + + F D +G
Sbjct: 290 TKALKLFEVMLREDISPN-YTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTL 348
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LI+MY KCG V+ A RVF + +K WT++IVGL + G + L++F +M R ++
Sbjct: 349 LIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPH 408
Query: 162 EVTYVGVLSACTH 174
+T++GVL+AC+H
Sbjct: 409 AITFIGVLNACSH 421
Score = 95.5 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 51/168 (30%), Positives = 86/168 (51%), Gaps = 18/168 (10%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE 65
++F M++KDV+SW +++ GY G++++A + F +MPE+D WT +IDG + +
Sbjct: 170 KVFDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEMPEKDSFSWTILIDGLSKSGKLEA 229
Query: 66 ALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK 125
A +F M +R ++N A+I+ Y K GD A+ +F +M +
Sbjct: 230 ARDVFDRM-----------PIRNSVSWN-------AMINGYMKAGDSNTAKELFDQMPER 271
Query: 126 DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
TW +MI G + AL +F MLR I + T +G +SA +
Sbjct: 272 SLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTILGAVSAAS 319
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 27/163 (16%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT--- 91
A F + E V W +I Y+ R +A+ LF ++ + D FT +L
Sbjct: 68 AHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIALFCKL-LCDFVPDSFTLPCVLKGCAR 126
Query: 92 ------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
F D FV +L+ MY KCG++E ++VF +M KD +W ++
Sbjct: 127 LGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSL 186
Query: 134 IVGLAISGHGDTALDMFSQM-----LRASIRLDEVTYVGVLSA 171
I G A G + AL+MF +M +I +D ++ G L A
Sbjct: 187 IDGYARCGEIELALEMFEEMPEKDSFSWTILIDGLSKSGKLEA 229
Score = 42.7 bits (99), Expect = 0.053, Method: Composition-based stats.
Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 23/145 (15%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D + T ++ Y G V A + F +P++ WT++I G + L LF EM
Sbjct: 342 DGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMC 401
Query: 75 TSNIRRDEFTTVRILTTFNNDIFV--------------GI--------ALIDMYCKCGDV 112
+ ++ T + +L ++ F GI LID+ C+ G +
Sbjct: 402 RTGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHL 461
Query: 113 EKAQRVFWKM-LRKDKFTWTAMIVG 136
E+A+ +M ++ +K WT+++ G
Sbjct: 462 EEAKDTIERMPIKANKVIWTSLLSG 486
>gi|255581962|ref|XP_002531779.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528572|gb|EEF30593.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 518
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 103/192 (53%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M K+V++ T +++GY+ G + +A + F +M + V W AMI G++ +R
Sbjct: 231 AWKLFKTMPVKNVVACTAMITGYMKLGFIKLAEKLFKEMSTDNVVTWNAMISGFIENSRA 290
Query: 64 REALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIAL 102
+ + LFR M IR + T +L + +D+ G +L
Sbjct: 291 EDGVKLFRTMVGFGIRPNPSTLSSLLLGCSELSALQLGRQVHQLVCKSPLASDMTAGTSL 350
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+ MYCKCGD+E A ++F ++ RKD TW AMI G A+ G G+ AL +F +M + I D
Sbjct: 351 VSMYCKCGDLEDAWKLFLELPRKDVVTWNAMISGYALHGAGEKALRLFDEMKKEGITPDW 410
Query: 163 VTYVGVLSACTH 174
+T+V VL AC H
Sbjct: 411 ITFVAVLLACNH 422
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 18/173 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A F + NKD SW T++SG+ G++ A + F QMP ++ V W AMI GY+
Sbjct: 166 MEKAQAFFDLIPNKDPASWNTLISGFSQNGKMAKAHKLFLQMPYKNVVTWNAMISGYIAC 225
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
A LF+ M N + A+I Y K G ++ A+++F
Sbjct: 226 GDLTSAWKLFKTMPVKN------------------VVACTAMITGYMKLGFIKLAEKLFK 267
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+M + TW AMI G + + + +F M+ IR + T +L C+
Sbjct: 268 EMSTDNVVTWNAMISGFIENSRAEDGVKLFRTMVGFGIRPNPSTLSSLLLGCS 320
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYI-NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
ALE+F NM K ++W +I++GY RG++ AR+ F ++PE D + + M+ Y+ +
Sbjct: 106 ALELFNNMTIKTTVTWNSILAGYSRKRGKMKNARELFDKIPEPDTISYNTMLACYVHNSD 165
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM 122
+A F + N D LI + + G + KA ++F +M
Sbjct: 166 MEKAQAFFDLIP------------------NKDPASWNTLISGFSQNGKMAKAHKLFLQM 207
Query: 123 LRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
K+ TW AMI G G +A +F M
Sbjct: 208 PYKNVVTWNAMISGYIACGDLTSAWKLFKTM 238
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ + T++VS Y G ++ A + F ++P +D V W AMI GY +AL LF EM+
Sbjct: 343 DMTAGTSLVSMYCKCGDLEDAWKLFLELPRKDVVTWNAMISGYALHGAGEKALRLFDEMK 402
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIAL 102
I D T V +L N+ F + L
Sbjct: 403 KEGITPDWITFVAVLLACNHAGFADLGL 430
>gi|15220333|ref|NP_171976.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75192500|sp|Q9MAT2.1|PPR10_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g04840
gi|7211995|gb|AAF40466.1|AC004809_24 F13M7.17 [Arabidopsis thaliana]
gi|332189629|gb|AEE27750.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 665
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 62/193 (32%), Positives = 106/193 (54%), Gaps = 21/193 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +F +M ++ SW+T++ GY++ G+++ A+Q F MPE++ V WT +I+G+ +
Sbjct: 212 MHMATTLFRSMPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLINGFSQT 271
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVG 99
+ A++ + EM ++ +E+T +L+ + D +G
Sbjct: 272 GDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIG 331
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+DMY KCG+++ A VF M KD +WTAMI G A+ G A+ F QM+ + +
Sbjct: 332 TALVDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEK 391
Query: 160 LDEVTYVGVLSAC 172
DEV ++ VL+AC
Sbjct: 392 PDEVVFLAVLTAC 404
Score = 75.5 bits (184), Expect = 8e-12, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 22/168 (13%)
Query: 10 NMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYLRVNRFRE 65
N + D ++V Y GQ+ A Q F + P+R ++W +I+GY R
Sbjct: 155 NFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYCRAKDMHM 214
Query: 66 ALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK 125
A TLFR M N ++T LI Y G++ +A+++F M K
Sbjct: 215 ATTLFRSMPERN--SGSWST----------------LIKGYVDSGELNRAKQLFELMPEK 256
Query: 126 DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+ +WT +I G + +G +TA+ + +ML ++ +E T VLSAC+
Sbjct: 257 NVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACS 304
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 23/137 (16%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T +V Y G++D A F+ M +D + WTAMI G+ RF +A+ FR+M S +
Sbjct: 332 TALVDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEK 391
Query: 80 RDEFTTVRILTTFNNDIFVGIAL----------------------IDMYCKCGDVEKAQR 117
DE + +LT N V + L +D+ + G + +A
Sbjct: 392 PDEVVFLAVLTACLNSSEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLNEAHE 451
Query: 118 VFWKM-LRKDKFTWTAM 133
+ M + D TW A+
Sbjct: 452 LVENMPINPDLTTWAAL 468
>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 623
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 101/193 (52%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M N+DV+ W T++ GY G V+ F +MPER+ W A+I GY F
Sbjct: 252 ARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLF 311
Query: 64 REALTLFREMQT-SNIRRDEFTTVRILTT---------------------FNNDIFVGIA 101
E L F+ M + S++ ++ T V +L+ +++VG A
Sbjct: 312 FEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNA 371
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+DMY KCG +E A VF M KD +W +I GLA+ G AL++F QM A + D
Sbjct: 372 LMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPD 431
Query: 162 EVTYVGVLSACTH 174
+T++G+L ACTH
Sbjct: 432 GITFIGILCACTH 444
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 87/174 (50%), Gaps = 19/174 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A +IF M ++V++WT++++GYI + AR+ F PERD VLW M+ GY+
Sbjct: 187 VGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEG 246
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
EA LF EM N D+ ++ Y G+VE + +F
Sbjct: 247 GDMVEARKLFHEMP------------------NRDVMFWNTVLKGYATNGNVEALEGLFE 288
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS-IRLDEVTYVGVLSACT 173
+M ++ F+W A+I G A +G L F +ML S + ++ T V VLSAC
Sbjct: 289 EMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACA 342
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 66/137 (48%), Gaps = 21/137 (15%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT--- 91
ARQ F Q+P+ + LW +M GY + +RE + LF +M+ +IR + FT +L +
Sbjct: 89 ARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGK 148
Query: 92 ------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
F + FVG LIDMY G V A ++F +M ++ WT+M
Sbjct: 149 INALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSM 208
Query: 134 IVGLAISGHGDTALDMF 150
I G +S +A +F
Sbjct: 209 INGYILSADLVSARRLF 225
>gi|242059659|ref|XP_002458975.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
gi|241930950|gb|EES04095.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
Length = 590
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 65/192 (33%), Positives = 103/192 (53%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F M +D++ W +++ GY G++D AR F +MPER+ + W+ +IDG++R
Sbjct: 233 ARELFDQMTERDLVCWNSMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVRCGEA 292
Query: 64 REALTLFREMQTSNIRRDEFTTV---------------RILTTF------NNDIFVGIAL 102
+EAL F+ M IR D V R L ++ +D+ V AL
Sbjct: 293 KEALEHFQSMLRCGIRPDRVAAVGAVSACAQLGALEQGRWLHSYLEKKKVLSDVVVQTAL 352
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG ++ A +F M + TW MIVGL G+G A+ +F +M + +D+
Sbjct: 353 IDMYMKCGRMDLAMLIFESMPERSVVTWNVMIVGLGTHGYGLDAVMLFHRMEAERVAVDD 412
Query: 163 VTYVGVLSACTH 174
++ + +L+ACTH
Sbjct: 413 LSLLAMLTACTH 424
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 45/183 (24%), Positives = 66/183 (36%), Gaps = 60/183 (32%)
Query: 30 GQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTV 86
G +A FA++PE RD W I + R R AL F M++ +R D +T
Sbjct: 59 GAAPLADAVFARLPEPAARDPFPWNTAIRLHAP-GRPRAALLYFARMRSCGVRPDAYTFP 117
Query: 87 RILTT---------------------FNNDIFVGIALIDMYCK----------------- 108
+L D+F ALI YC+
Sbjct: 118 AVLKACGCAPGCRAGLLVHAEAVRRGLGADLFTVNALISFYCRILDCISGRKVFDEAGGV 177
Query: 109 ----------------CGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHG--DTALDMF 150
CG++ AQ +F +M ++D F+W A+I G G D A ++F
Sbjct: 178 SRDLVSWNSMVAGYVGCGEMGLAQELFDEMPQRDAFSWGALIDGYGKQGGAGVDRARELF 237
Query: 151 SQM 153
QM
Sbjct: 238 DQM 240
>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
[Vitis vinifera]
Length = 612
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 71/197 (36%), Positives = 105/197 (53%), Gaps = 22/197 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
MG A ++F M +DV++WTT+VSGY G + A + F +MPE++ V WTA+I GY R
Sbjct: 243 MGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARN 302
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVG 99
+AL LF +M ++R D+FT L F + V
Sbjct: 303 GMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVV 362
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRK-DKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
ALIDMY KCG + ++VF M K D W +I LA G G+ A+ M M+R+
Sbjct: 363 SALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGA 422
Query: 159 RLDEVTYVGVLSACTHN 175
+ D++T+V +L+AC+H+
Sbjct: 423 KPDKITFVVILNACSHS 439
Score = 96.3 bits (238), Expect = 5e-18, Method: Composition-based stats.
Identities = 56/221 (25%), Positives = 100/221 (45%), Gaps = 52/221 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +++ SW ++SGY G + AR+ F +MPE+D V W M+ + + +
Sbjct: 114 ARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYW 173
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
EAL + E + I+ + F+ +LT F +++ + ++
Sbjct: 174 DEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSV 233
Query: 103 IDMYCKC-------------------------------GDVEKAQRVFWKMLRKDKFTWT 131
+D Y KC GD++ A +F +M K+ +WT
Sbjct: 234 LDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWT 293
Query: 132 AMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
A+I G A +G G AL++F++M+ +R D+ T+ L AC
Sbjct: 294 ALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCAC 334
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 31/107 (28%)
Query: 97 FVGIALIDMYCKCGDVEKAQRVF----------W---------------------KMLRK 125
F+ LI+MY KCG +A++VF W KM K
Sbjct: 96 FLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEK 155
Query: 126 DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
D +W M++ A G+ D AL +S+ + I+ + ++ GVL+ C
Sbjct: 156 DVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVC 202
>gi|255552093|ref|XP_002517091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543726|gb|EEF45254.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 606
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 98/184 (53%), Gaps = 22/184 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A EIF +M KDV SWT++V+GY G+++IAR++F MP+R+ V W AMI GY + N+
Sbjct: 413 AREIFDSMGTKDVFSWTSMVNGYAKTGELEIARKFFDDMPKRNVVSWNAMIAGYSQNNQP 472
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN----------------------DIFVGIA 101
++A+ LF M + E T V +L+ + + A
Sbjct: 473 KKAIVLFHHMVGEGLIPIENTLVCVLSACGQLGYLDLGRLIHMYHIERKQKGTSVIIANA 532
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMY KCG ++ A RVF M +D +W +MI A GH AL MF QM+ + D
Sbjct: 533 LIDMYAKCGVIDAAARVFNGMPGRDLVSWNSMIAACASHGHAKQALLMFGQMIHEGFKPD 592
Query: 162 EVTY 165
++T+
Sbjct: 593 DITF 596
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 21/154 (13%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT 85
Y G + +AR+ F + P RD V WT+MIDGY + + +AL LF M S++ +E T
Sbjct: 303 YSVHGCLVLARKVFDETPARDVVSWTSMIDGYSTHDYYTDALKLFDSMLLSDVEPNEVTM 362
Query: 86 VRILTTFNN--DIFVGI-------------------ALIDMYCKCGDVEKAQRVFWKMLR 124
+ +L+ + D+ +G A++DMY KCG + A+ +F M
Sbjct: 363 ISVLSACSQKGDLSLGKSIHEYVRRKNLNLSVNLMNAILDMYVKCGCLVAAREIFDSMGT 422
Query: 125 KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
KD F+WT+M+ G A +G + A F M + ++
Sbjct: 423 KDVFSWTSMVNGYAKTGELEIARKFFDDMPKRNV 456
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 67/165 (40%), Gaps = 21/165 (12%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G + A F Q+ + +W MI G+ L+ F +M + D + V L
Sbjct: 206 GDIRHAHLLFNQIEYPNTYIWNTMIRGFSNAKMPVMGLSFFWQMVRERVEMDTRSFVFAL 265
Query: 90 TT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
F + V LI Y G + A++VF + +D
Sbjct: 266 KASEQFLTALEGESIHCAIWKIGFPCALLVQNGLIHFYSVHGCLVLARKVFDETPARDVV 325
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+WT+MI G + + AL +F ML + + +EVT + VLSAC+
Sbjct: 326 SWTSMIDGYSTHDYYTDALKLFDSMLLSDVEPNEVTMISVLSACS 370
>gi|357151860|ref|XP_003575929.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g14820-like, partial [Brachypodium
distachyon]
Length = 498
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 101/195 (51%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +I+ M+ KD++S T +V GY G+++IAR F M E+D V W+AMI Y
Sbjct: 145 MEMADKIYSGMQRKDLVSSTAMVCGYAKNGKIEIARSIFNHMAEKDVVSWSAMISAYAEN 204
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT----------------FNNDIFVGI---- 100
N+ E L LF +MQ + DE T + +++ N F I
Sbjct: 205 NQPSEVLNLFNKMQGCGVSPDEITMLSVISACANIGSLDKARWIHSIVGNHGFYKILSIC 264
Query: 101 -ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDM+ KCG + A +F M RK+ TWT+MI A+ G G +AL +F QM +
Sbjct: 265 NALIDMFSKCGSLTLALNMFNAMPRKNVITWTSMIAAFAMHGDGPSALTLFGQMKGEGVE 324
Query: 160 LDEVTYVGVLSACTH 174
+ VT++ +L AC H
Sbjct: 325 PNGVTFLVLLYACCH 339
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 93/214 (43%), Gaps = 52/214 (24%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
++D T +V Y +V AR+ F MPERD V W M+D Y +RE L L +
Sbjct: 25 DEDGFVGTALVGAYAACQRVAEARRVFDGMPERDLVAWGVMLDSYFNTQNYRETLLLLNK 84
Query: 73 MQTSNIRRDEFTTVRILTTFNN-----------------DIFV----GIALIDMYCKCGD 111
M+ S + D+ +L+T + DIFV ALI+MY C D
Sbjct: 85 MKRSRVVPDQVILATVLSTCGHTRHLRSGKTIHSYIQVSDIFVDARLSSALINMYASCMD 144
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTA------------------------- 146
+E A +++ M RKD + TAM+ G A +G + A
Sbjct: 145 MEMADKIYSGMQRKDLVSSTAMVCGYAKNGKIEIARSIFNHMAEKDVVSWSAMISAYAEN 204
Query: 147 ------LDMFSQMLRASIRLDEVTYVGVLSACTH 174
L++F++M + DE+T + V+SAC +
Sbjct: 205 NQPSEVLNLFNKMQGCGVSPDEITMLSVISACAN 238
>gi|297740478|emb|CBI30660.3| unnamed protein product [Vitis vinifera]
Length = 598
Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 73/197 (37%), Positives = 116/197 (58%), Gaps = 23/197 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR- 59
+G+A +F M +K+V+ T+++SGY+++G V+ A F + E+D V++ AMI+GY +
Sbjct: 200 VGYARRVFDMMLDKNVLCSTSMISGYMSQGSVEDAEDIFKRTVEKDVVVFNAMIEGYSKS 259
Query: 60 VNRFREALTLFREMQTSNIR--RDEFTTV----RILTTFN---------------NDIFV 98
V R +L ++ +MQ N R F +V +LT F NDI +
Sbjct: 260 VETARRSLEVYIDMQRLNFRPTMSTFASVIGACSVLTVFEIGQQVQSQLVKMNFYNDIKM 319
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM-LRAS 157
G ALIDMY KCG +E A+RVF M K+ F+WT+MI G +G+ + AL++FS+M +
Sbjct: 320 GSALIDMYSKCGRIEDARRVFDHMPEKNVFSWTSMIDGYGKNGNSNEALELFSRMQIECH 379
Query: 158 IRLDEVTYVGVLSACTH 174
++ + VT++ LSAC H
Sbjct: 380 VKPNYVTFLSALSACGH 396
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 42/151 (27%), Positives = 61/151 (40%), Gaps = 27/151 (17%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL----- 89
ARQ F +M + + MI GYL+ + E L L + S + D FT IL
Sbjct: 96 ARQLFDEMHQPTLSAYNYMISGYLKHGQIEELLNLVSRLTFSYEKPDGFTFSMILKATGC 155
Query: 90 ----------------------TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDK 127
+ +D + AL+D Y K G V A+RVF ML K+
Sbjct: 156 ASGGIFPLTYSLGKVVHAQILRSNVESDDVLYTALVDSYVKNGKVGYARRVFDMMLDKNV 215
Query: 128 FTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
T+MI G G + A D+F + + +
Sbjct: 216 LCSTSMISGYMSQGSVEDAEDIFKRTVEKDV 246
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 44/217 (20%), Positives = 85/217 (39%), Gaps = 64/217 (29%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVD-----IARQYFA-QMP------------- 43
+A ++F M + ++ ++SGY+ GQ++ ++R F+ + P
Sbjct: 95 YARQLFDEMHQPTLSAYNYMISGYLKHGQIEELLNLVSRLTFSYEKPDGFTFSMILKATG 154
Query: 44 --------------------------ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 77
E D VL+TA++D Y++ + A +F M
Sbjct: 155 CASGGIFPLTYSLGKVVHAQILRSNVESDDVLYTALVDSYVKNGKVGYARRVFDMM---- 210
Query: 78 IRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGL 137
+ ++ ++I Y G VE A+ +F + + KD + AMI G
Sbjct: 211 --------------LDKNVLCSTSMISGYMSQGSVEDAEDIFKRTVEKDVVVFNAMIEGY 256
Query: 138 AISGH-GDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+ S +L+++ M R + R T+ V+ AC+
Sbjct: 257 SKSVETARRSLEVYIDMQRLNFRPTMSTFASVIGACS 293
>gi|255575746|ref|XP_002528772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531775|gb|EEF33594.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 676
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 101/192 (52%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M +D I+WT+++ GY+ G V A F MPE+D V WT MI G++R F
Sbjct: 321 AQNLFDTMPVRDKITWTSMIDGYLVIGNVSEACSLFLYMPEKDAVAWTTMISGHVRNELF 380
Query: 64 REALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIAL 102
EA LF EM T +R T + T +ND+ + +L
Sbjct: 381 AEATYLFSEMLTQGVRPLSSTYAILFGAAGAVASLDQGRQLHAMLTKTLSDNDLILENSL 440
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I MY KCG++ A R+F +M+ D +W +MI+G + G + AL++F M+ + +
Sbjct: 441 ISMYAKCGEIRNAYRIFSQMISHDLISWNSMIMGFSHHGLANEALEVFEAMVDSGTHPNS 500
Query: 163 VTYVGVLSACTH 174
VT++GVLSAC+H
Sbjct: 501 VTFLGVLSACSH 512
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 19/171 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M +++V+SW ++ G I G ++ AR F + P ++ W MI GY R
Sbjct: 91 AKSLFEEMPDRNVVSWNAMIVGLIRNGDLEAARMVFDESPVKNAASWNGMIAGYAENGRM 150
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
EA LF EM+ N + +++ YC+ G+VE+ +F M
Sbjct: 151 EEARALFDEMEDRN------------------VITWTSMVSGYCRAGEVEEGYHLFRTMP 192
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLR-ASIRLDEVTYVGVLSACT 173
+++ +WTAMI G +G + AL +F +M R A I + T++ + AC
Sbjct: 193 KRNIVSWTAMIGGFTWNGFYEDALLLFLEMKRGADITPNIETFISLAYACA 243
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 98/229 (42%), Gaps = 61/229 (26%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M++++VI+WT++VSGY G+V+ F MP+R+ V WTAMI G+ +
Sbjct: 153 ARALFDEMEDRNVITWTSMVSGYCRAGEVEEGYHLFRTMPKRNIVSWTAMIGGFTWNGFY 212
Query: 64 REALTLFREMQ-----TSNI----------------RRDEFTTVRILTT-FNNDIFVGIA 101
+AL LF EM+ T NI R + R++T +ND + G
Sbjct: 213 EDALLLFLEMKRGADITPNIETFISLAYACAGLGFHRLGKQLHARLITEGLDNDDYDGRL 272
Query: 102 -----------------------------------LIDMYCKCGDVEKAQRVFWKMLRKD 126
+I+ Y + G ++KAQ +F M +D
Sbjct: 273 SKGLICMYSSIGFMDYAHYIFNKNSNYYVVQSCNYMINGYIRIGLLDKAQNLFDTMPVRD 332
Query: 127 KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
K TWT+MI G + G+ A +F M D V + ++S N
Sbjct: 333 KITWTSMIDGYLVIGNVSEACSLFLYMPEK----DAVAWTTMISGHVRN 377
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 73/151 (48%), Gaps = 13/151 (8%)
Query: 16 VISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 75
++ WT+++S Y G VD AR F MPER+ V + A++ G L+ R EA+ LF EM
Sbjct: 10 IVYWTSLLSKYSRSGFVDEARALFDIMPERNAVSYNALLSGLLQCGRLSEAMKLFEEMPE 69
Query: 76 SNIRR---------DEFTTVRILTTF----NNDIFVGIALIDMYCKCGDVEKAQRVFWKM 122
N+ D + F + ++ A+I + GD+E A+ VF +
Sbjct: 70 RNVVSWTSMLCGLADAGKICEAKSLFEEMPDRNVVSWNAMIVGLIRNGDLEAARMVFDES 129
Query: 123 LRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
K+ +W MI G A +G + A +F +M
Sbjct: 130 PVKNAASWNGMIAGYAENGRMEEARALFDEM 160
>gi|225443851|ref|XP_002267303.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690,
mitochondrial [Vitis vinifera]
Length = 533
Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 73/197 (37%), Positives = 116/197 (58%), Gaps = 23/197 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR- 59
+G+A +F M +K+V+ T+++SGY+++G V+ A F + E+D V++ AMI+GY +
Sbjct: 200 VGYARRVFDMMLDKNVLCSTSMISGYMSQGSVEDAEDIFKRTVEKDVVVFNAMIEGYSKS 259
Query: 60 VNRFREALTLFREMQTSNIR--RDEFTTV----RILTTFN---------------NDIFV 98
V R +L ++ +MQ N R F +V +LT F NDI +
Sbjct: 260 VETARRSLEVYIDMQRLNFRPTMSTFASVIGACSVLTVFEIGQQVQSQLVKMNFYNDIKM 319
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM-LRAS 157
G ALIDMY KCG +E A+RVF M K+ F+WT+MI G +G+ + AL++FS+M +
Sbjct: 320 GSALIDMYSKCGRIEDARRVFDHMPEKNVFSWTSMIDGYGKNGNSNEALELFSRMQIECH 379
Query: 158 IRLDEVTYVGVLSACTH 174
++ + VT++ LSAC H
Sbjct: 380 VKPNYVTFLSALSACGH 396
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 42/151 (27%), Positives = 61/151 (40%), Gaps = 27/151 (17%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL----- 89
ARQ F +M + + MI GYL+ + E L L + S + D FT IL
Sbjct: 96 ARQLFDEMHQPTLSAYNYMISGYLKHGQIEELLNLVSRLTFSYEKPDGFTFSMILKATGC 155
Query: 90 ----------------------TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDK 127
+ +D + AL+D Y K G V A+RVF ML K+
Sbjct: 156 ASGGIFPLTYSLGKVVHAQILRSNVESDDVLYTALVDSYVKNGKVGYARRVFDMMLDKNV 215
Query: 128 FTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
T+MI G G + A D+F + + +
Sbjct: 216 LCSTSMISGYMSQGSVEDAEDIFKRTVEKDV 246
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 44/217 (20%), Positives = 85/217 (39%), Gaps = 64/217 (29%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVD-----IARQYFA-QMP------------- 43
+A ++F M + ++ ++SGY+ GQ++ ++R F+ + P
Sbjct: 95 YARQLFDEMHQPTLSAYNYMISGYLKHGQIEELLNLVSRLTFSYEKPDGFTFSMILKATG 154
Query: 44 --------------------------ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 77
E D VL+TA++D Y++ + A +F M
Sbjct: 155 CASGGIFPLTYSLGKVVHAQILRSNVESDDVLYTALVDSYVKNGKVGYARRVFDMM---- 210
Query: 78 IRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGL 137
+ ++ ++I Y G VE A+ +F + + KD + AMI G
Sbjct: 211 --------------LDKNVLCSTSMISGYMSQGSVEDAEDIFKRTVEKDVVVFNAMIEGY 256
Query: 138 AISGH-GDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+ S +L+++ M R + R T+ V+ AC+
Sbjct: 257 SKSVETARRSLEVYIDMQRLNFRPTMSTFASVIGACS 293
>gi|255551961|ref|XP_002517025.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543660|gb|EEF45188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 640
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 105/195 (53%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A E F M+ ++V SW I+ GYI G VD AR F QMPE++ V W+ MI GY +
Sbjct: 277 MDAAKEFFDRMQERNVASWVMIIDGYIKVGDVDAARSVFDQMPEKNLVAWSTMIGGYAKT 336
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVG 99
+L L++ + I+ DE + I++ + ++ V
Sbjct: 337 GHPYSSLKLYKTFKEQGIKPDETFALGIISACSQLGVPDTAESVICDFVGPSLFPNLQVV 396
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
+LIDMY KCG++E+A +VF + +KD ++ +I A G + A+ +FS+M +A+I+
Sbjct: 397 TSLIDMYAKCGNIERAVQVFEMVDQKDLHCYSTVITAFANHGLSEDAISLFSEMQKANIK 456
Query: 160 LDEVTYVGVLSACTH 174
D V ++GVL+AC H
Sbjct: 457 PDGVAFLGVLTACNH 471
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 106/218 (48%), Gaps = 44/218 (20%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
MG A ++F M+ +D +SW ++++GY N G+VDIAR+ F +M ER+ + WT+MI GY++
Sbjct: 153 MGSARQMFDEMEERDAVSWNSMITGYGNNGRVDIARKLFDRMEERNVISWTSMIQGYVKA 212
Query: 61 NRFREALTLFREMQTSNI------------------RRDEFTTVRI--LTTFN------- 93
EA LF M ++ R+ F + I + T+N
Sbjct: 213 GDLLEARVLFERMPEKDLASWKVMVSAYMSVGNLVAARNLFELMPIHDVGTWNLMISGCC 272
Query: 94 -----------------NDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVG 136
++ + +ID Y K GDV+ A+ VF +M K+ W+ MI G
Sbjct: 273 KAGEMDAAKEFFDRMQERNVASWVMIIDGYIKVGDVDAARSVFDQMPEKNLVAWSTMIGG 332
Query: 137 LAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
A +GH ++L ++ I+ DE +G++SAC+
Sbjct: 333 YAKTGHPYSSLKLYKTFKEQGIKPDETFALGIISACSQ 370
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 81/170 (47%), Gaps = 22/170 (12%)
Query: 5 LEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFR 64
L I G++ + D ++ ++ Y G V A + F + PE + LWTA+I G+ N++
Sbjct: 26 LLISGSIASSD-LTLNKLLRLYSKFGAVSYAHKLFDETPEPNSFLWTALIHGFTENNQYE 84
Query: 65 EALTLFREMQTSNIRRDEFTTVRILTTF-------NNDIFVGIA--------------LI 103
A F +M NI FT +L + D+ G+A +I
Sbjct: 85 NAFAFFIKMHRENIVPLNFTIASVLKAVSRLGRIKDGDLVYGLAVRCGYEFDLVVKNVMI 144
Query: 104 DMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+++ +CG++ A+++F +M +D +W +MI G +G D A +F +M
Sbjct: 145 ELFMRCGEMGSARQMFDEMEERDAVSWNSMITGYGNNGRVDIARKLFDRM 194
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 13/152 (8%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D++ ++ ++ G++ ARQ F +M ERD V W +MI GY R A LF M+
Sbjct: 136 DLVVKNVMIELFMRCGEMGSARQMFDEMEERDAVSWNSMITGYGNNGRVDIARKLFDRME 195
Query: 75 TSN-----------IRRDEFTTVRIL--TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWK 121
N ++ + R+L D+ ++ Y G++ A+ +F
Sbjct: 196 ERNVISWTSMIQGYVKAGDLLEARVLFERMPEKDLASWKVMVSAYMSVGNLVAARNLFEL 255
Query: 122 MLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
M D TW MI G +G D A + F +M
Sbjct: 256 MPIHDVGTWNLMISGCCKAGEMDAAKEFFDRM 287
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T+++ Y G ++ A Q F + ++D ++ +I + +A++LF EMQ +NI+
Sbjct: 397 TSLIDMYAKCGNIERAVQVFEMVDQKDLHCYSTVITAFANHGLSEDAISLFSEMQKANIK 456
Query: 80 RDEFTTVRILTTFNNDIFVG 99
D + +LT N+ VG
Sbjct: 457 PDGVAFLGVLTACNHGGLVG 476
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%)
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+ +Y K G V A ++F + + F WTA+I G + + A F +M R +I
Sbjct: 42 LLRLYSKFGAVSYAHKLFDETPEPNSFLWTALIHGFTENNQYENAFAFFIKMHRENIVPL 101
Query: 162 EVTYVGVLSACT 173
T VL A +
Sbjct: 102 NFTIASVLKAVS 113
>gi|297811669|ref|XP_002873718.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319555|gb|EFH49977.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 548
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 112/198 (56%), Gaps = 27/198 (13%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+ +F M +KD ++W +++G + ++D AR+ F + E+D V W AMI GY+
Sbjct: 197 AMRLFDEMPDKDQVAWNVMITGCLKCREMDSARELFDRFTEKDVVTWNAMISGYVNCGYP 256
Query: 64 REALTLFREMQTSNIRRDEFTTVRILT----------------------TFNNDIFVGI- 100
+EAL++F+EM+ + D T + +L+ + ++ I+VG
Sbjct: 257 KEALSIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTP 316
Query: 101 ---ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
ALIDMY KCG +++A VF M +D TW +IVGLA+ H + +++MF +M R
Sbjct: 317 IWNALIDMYAKCGSIDRAIEVFRGMKDRDLSTWNTLIVGLALH-HAEGSVEMFEEMQRLK 375
Query: 158 IRLDEVTYVGVLSACTHN 175
+ +EVT++GV+ AC+H+
Sbjct: 376 VWPNEVTFIGVILACSHS 393
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 75/187 (40%), Gaps = 25/187 (13%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+ G M N V+ + G + A + F ++P+ D + ++ G + + +
Sbjct: 37 VNGLMSNLSVVGELIYSASLSVPGALKYAHKLFEEIPKPDVSICNHVLRGSAQSLKPEKT 96
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDM 105
+ L+ EM+ + D +T +L + + +V ALI
Sbjct: 97 VALYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAIHGKVVRHGFLLNEYVKNALILF 156
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
+ CGD+ A +F + K W++M G A G D A+ +F +M D+V +
Sbjct: 157 HANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPDK----DQVAW 212
Query: 166 VGVLSAC 172
+++ C
Sbjct: 213 NVMITGC 219
>gi|215741011|dbj|BAG97506.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 483
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 103/192 (53%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F M ++D++ W +++ GY G++D AR F +MPER+ + W+ +IDGY+R
Sbjct: 126 ARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEP 185
Query: 64 REALTLFREMQTSNIRRDE---------------FTTVRILTTFNN------DIFVGIAL 102
EAL F+ M I+ D R L ++ D+ V AL
Sbjct: 186 NEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTAL 245
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG ++ A+ +F M +K TW MIVGL G+G A+ +F+QM +D+
Sbjct: 246 IDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDD 305
Query: 163 VTYVGVLSACTH 174
++ + VL++CTH
Sbjct: 306 LSILAVLTSCTH 317
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 82/152 (53%), Gaps = 25/152 (16%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR----VNRFREALTL 69
+D++SW ++V+GY+ G+VD+A+ F +M +RD W MIDGY V+R RE L
Sbjct: 73 RDLVSWNSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARE---L 129
Query: 70 FREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT 129
F +M R L +N ++ID Y + G +++A+ +F +M ++ +
Sbjct: 130 FDQMPD-----------RDLVCWN-------SMIDGYARHGRMDEARVLFEEMPERNVIS 171
Query: 130 WTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
W+ +I G G + AL+ F +MLR I+ D
Sbjct: 172 WSIVIDGYVRFGEPNEALEFFQRMLRCGIKPD 203
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 62/123 (50%), Gaps = 19/123 (15%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYIN-RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVN 61
A ++F M+ +D SW T++ GY G VD AR+ F QMP+RD V W +MIDGY R
Sbjct: 93 LAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRDLVCWNSMIDGYARHG 152
Query: 62 RFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWK 121
R EA LF EM N+ I I +ID Y + G+ +A F +
Sbjct: 153 RMDEARVLFEEMPERNV-----------------ISWSI-VIDGYVRFGEPNEALEFFQR 194
Query: 122 MLR 124
MLR
Sbjct: 195 MLR 197
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
+ T + D+F ALI YC+ GD ++VF +R D +W +M+ G G D A
Sbjct: 37 VRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHGVR-DLVSWNSMVAGYVGCGEVDLAQ 95
Query: 148 DMFSQM 153
D+F +M
Sbjct: 96 DLFDEM 101
>gi|414880744|tpg|DAA57875.1| TPA: hypothetical protein ZEAMMB73_657034, partial [Zea mays]
Length = 1822
Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 70/187 (37%), Positives = 97/187 (51%), Gaps = 21/187 (11%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 67
F + DV+ T +V+ G VD AR F MP+RD+V W+AMI GY+ V R REAL
Sbjct: 1377 FAEIACPDVVCVTAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREAL 1436
Query: 68 TLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMY 106
LF EM ++ E T V +LT I +G AL+DMY
Sbjct: 1437 MLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMY 1496
Query: 107 CKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYV 166
KCG V A VF M ++ +TWT+ + GLA++G G L +F +M A I+ + V++V
Sbjct: 1497 SKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFV 1556
Query: 167 GVLSACT 173
VL C+
Sbjct: 1557 AVLRGCS 1563
Score = 37.4 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 40/111 (36%), Gaps = 31/111 (27%)
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALD------ 148
D V ++ MY GDV ++ F ++ D TAM+ LA G D A D
Sbjct: 1353 DPHVQSGVLSMYAALGDVASSRAAFAEIACPDVVCVTAMVAALAAGGDVDAARDLFDGMP 1412
Query: 149 -------------------------MFSQMLRASIRLDEVTYVGVLSACTH 174
+F +ML A + E T V VL+AC
Sbjct: 1413 QRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQ 1463
>gi|212721478|ref|NP_001131178.1| uncharacterized protein LOC100192486 [Zea mays]
gi|194690792|gb|ACF79480.1| unknown [Zea mays]
Length = 617
Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 70/187 (37%), Positives = 97/187 (51%), Gaps = 21/187 (11%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 67
F + DV+ T +V+ G VD AR F MP+RD+V W+AMI GY+ V R REAL
Sbjct: 172 FAEIACPDVVCVTAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREAL 231
Query: 68 TLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMY 106
LF EM ++ E T V +LT I +G AL+DMY
Sbjct: 232 MLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMY 291
Query: 107 CKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYV 166
KCG V A VF M ++ +TWT+ + GLA++G G L +F +M A I+ + V++V
Sbjct: 292 SKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFV 351
Query: 167 GVLSACT 173
VL C+
Sbjct: 352 AVLRGCS 358
Score = 37.4 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 40/111 (36%), Gaps = 31/111 (27%)
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALD------ 148
D V ++ MY GDV ++ F ++ D TAM+ LA G D A D
Sbjct: 148 DPHVQSGVLSMYAALGDVASSRAAFAEIACPDVVCVTAMVAALAAGGDVDAARDLFDGMP 207
Query: 149 -------------------------MFSQMLRASIRLDEVTYVGVLSACTH 174
+F +ML A + E T V VL+AC
Sbjct: 208 QRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQ 258
>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 108/195 (55%), Gaps = 26/195 (13%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M+ KDV SWT++++G+I ++ AR+ F +MP R+ V WTAMI GY++
Sbjct: 157 ACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVP 216
Query: 64 REALTLFREMQTSNIRRDEFTTVRIL------------------------TTFNNDIFVG 99
L LF+EM+ +D T + I+ T + D+ V
Sbjct: 217 IPGLELFQEMRAEG--KDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVN 274
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+DMY K G + A ++F +M ++D F+WT MI GLA+ G G AL+ FS M ++ +
Sbjct: 275 NALMDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGVV 334
Query: 160 LDEVTYVGVLSACTH 174
+EVT + VLSAC+H
Sbjct: 335 PNEVTLLSVLSACSH 349
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 81/206 (39%), Gaps = 55/206 (26%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
+++ Y G A++ F + D V WT +I YL ++ +A ++F + S +R D
Sbjct: 43 LLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPD 102
Query: 82 EFTTVRILTT---------------------FNNDIFVGIALIDMYC------------- 107
F V ++ +D VG ALIDMY
Sbjct: 103 SFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFK 162
Query: 108 ------------------KCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDM 149
KC D+E A+R+F +M ++ +WTAMI G L++
Sbjct: 163 TMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLEL 222
Query: 150 FSQMLRASIR--LDEVTYVGVLSACT 173
F +M RA + +T V VLS C
Sbjct: 223 FQEM-RAEGKDWPTVITIVAVLSGCA 247
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%)
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L++ Y + G AQ+VF + D +WT +I + A +FS + + +R D
Sbjct: 43 LLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPD 102
Query: 162 EVTYVGVLSACTH 174
VG +SAC H
Sbjct: 103 SFCVVGAVSACGH 115
>gi|125528144|gb|EAY76258.1| hypothetical protein OsI_04193 [Oryza sativa Indica Group]
Length = 565
Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 70/178 (39%), Positives = 100/178 (56%), Gaps = 22/178 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQM-PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 78
T +++ Y +V +AR F M +++ W+AMI GY RV EAL LFREMQ +++
Sbjct: 167 TGLLNLYAKCEEVALARTVFDGMVGDKNLAAWSAMIGGYSRVGMVNEALGLFREMQAADV 226
Query: 79 RRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQR 117
DE T V +++ D+ + ALIDMY KCG +E+A+
Sbjct: 227 NPDEVTMVSVISACAKAGALDLGRWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKG 286
Query: 118 VFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
VF M +D W+AMIVGLAI G + AL +FS+ML +R + VT++GVLSAC H+
Sbjct: 287 VFDAMAERDTKAWSAMIVGLAIHGLVEVALKLFSRMLELKVRPNNVTFIGVLSACAHS 344
>gi|115440653|ref|NP_001044606.1| Os01g0814300 [Oryza sativa Japonica Group]
gi|20161481|dbj|BAB90405.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|56785052|dbj|BAD82691.1| PPR repeat containing protein-like [Oryza sativa Japonica Group]
gi|113534137|dbj|BAF06520.1| Os01g0814300 [Oryza sativa Japonica Group]
Length = 604
Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 70/178 (39%), Positives = 100/178 (56%), Gaps = 22/178 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQM-PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 78
T +++ Y +V +AR F M +++ W+AMI GY RV EAL LFREMQ +++
Sbjct: 170 TGLLNLYAKCEEVALARTVFDGMVGDKNLAAWSAMIGGYSRVGMVNEALGLFREMQAADV 229
Query: 79 RRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQR 117
DE T V +++ D+ + ALIDMY KCG +E+A+
Sbjct: 230 NPDEVTMVSVISACAKAGALDLGRWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKG 289
Query: 118 VFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
VF M +D W+AMIVGLAI G + AL +FS+ML +R + VT++GVLSAC H+
Sbjct: 290 VFDAMAERDTKAWSAMIVGLAIHGLVEVALKLFSRMLELKVRPNNVTFIGVLSACAHS 347
>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
[Vitis vinifera]
gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
Length = 742
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 98/176 (55%), Gaps = 21/176 (11%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
++ + Y GQV +AR +F QM + ++W AMI GY + EA+ LF+EM + NIR
Sbjct: 310 SLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRT 369
Query: 81 DEFTTVRIL---------------------TTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119
D T + T + ND+FV ALIDM+ KCG V+ A+ VF
Sbjct: 370 DSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVF 429
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
+ L KD W+AMIVG + G G A+D+F M +A + ++VT+VG+L+AC H+
Sbjct: 430 DRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHS 485
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 86/175 (49%), Gaps = 21/175 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T V+ N G++ AR+ F + PE LW A+I GY N F +A+ ++ MQ S +
Sbjct: 107 TKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVN 166
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
D FT +L F +D+FV L+ +Y KCG VE+A+ V
Sbjct: 167 PDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIV 226
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
F + ++ +WT+MI G +G AL +F QM + +++ D + V VL A T
Sbjct: 227 FEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYT 281
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 87/182 (47%), Gaps = 21/182 (11%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
DV +V+ Y G+V+ AR F + +R+ V WT+MI GY + EAL +F +M
Sbjct: 202 SDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQM 261
Query: 74 QTSNIRRDEFTTVRILTTFNN--DIFVG-------------------IALIDMYCKCGDV 112
+ N++ D V +L + + D+ G I+L MY KCG V
Sbjct: 262 RQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQV 321
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
A+ F +M + W AMI G A +G+ + A+ +F +M+ +IR D +T + AC
Sbjct: 322 MVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILAC 381
Query: 173 TH 174
Sbjct: 382 AQ 383
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 21/162 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV T ++ + G VD+AR+ F + ++D V+W+AMI GY R ++A+ LF M+
Sbjct: 405 DVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMK 464
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM----LRKDKFTW 130
+ + ++ T V +LT N+ G VE+ +F M + +
Sbjct: 465 QAGVCPNDVTFVGLLTACNHS--------------GLVEEGWELFHSMKYYGIEARHQHY 510
Query: 131 TAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
++ L SGH + A D + M I + +L AC
Sbjct: 511 ACVVDLLGRSGHLNEAYDFITTM---PIEPGVSVWGALLGAC 549
>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 101/193 (52%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M N+DV+ W T++ GY G V+ F +MPER+ W A+I GY F
Sbjct: 94 ARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLF 153
Query: 64 REALTLFREMQT-SNIRRDEFTTVRILTT---------------------FNNDIFVGIA 101
E L F+ M + S++ ++ T V +L+ +++VG A
Sbjct: 154 FEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNA 213
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+DMY KCG +E A VF M KD +W +I GLA+ G AL++F QM A + D
Sbjct: 214 LMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPD 273
Query: 162 EVTYVGVLSACTH 174
+T++G+L ACTH
Sbjct: 274 GITFIGILCACTH 286
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 19/169 (11%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE 65
EIF M ++V++WT++++GYI + AR+ F PERD VLW M+ GY+ E
Sbjct: 34 EIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVE 93
Query: 66 ALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK 125
A LF EM ++ F N + G Y G+VE + +F +M +
Sbjct: 94 ARKLFHEMPNRDV------------MFWNTVLKG------YATNGNVEALEGLFEEMPER 135
Query: 126 DKFTWTAMIVGLAISGHGDTALDMFSQMLRAS-IRLDEVTYVGVLSACT 173
+ F+W A+I G A +G L F +ML S + ++ T V VLSAC
Sbjct: 136 NIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACA 184
>gi|115467246|ref|NP_001057222.1| Os06g0231400 [Oryza sativa Japonica Group]
gi|51535413|dbj|BAD37283.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113595262|dbj|BAF19136.1| Os06g0231400 [Oryza sativa Japonica Group]
gi|125596589|gb|EAZ36369.1| hypothetical protein OsJ_20697 [Oryza sativa Japonica Group]
Length = 602
Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 67/181 (37%), Positives = 94/181 (51%), Gaps = 21/181 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV+SWTT+V G G VD AR+ F MP R+ V W +MI GY++ +RF +AL +F EM+
Sbjct: 163 DVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMR 222
Query: 75 TSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVE 113
+ + F L D + A++DMYCKCG V+
Sbjct: 223 ALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVD 282
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+A VF + + TW MI G A+ G D AL++F QM A + D+VT + VL+AC
Sbjct: 283 EAWGVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACA 342
Query: 174 H 174
H
Sbjct: 343 H 343
>gi|354805242|gb|AER41656.1| CRR4 [Oryza rufipogon]
Length = 752
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 101/193 (52%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M KDV+SWT +VS Y G +D A + F MP ++ V W AMI GY +R+
Sbjct: 265 ARSVFDRMDQKDVVSWTAMVSAYAKIGDLDTANELFDHMPVKNLVSWNAMITGYNHNSRY 324
Query: 64 REALTLFREMQTSN-IRRDEFTTVRILTT---------------------FNNDIFVGIA 101
EAL F+ M R DE T V +++ + + +G A
Sbjct: 325 DEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNA 384
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDM+ KCGDV +AQ +F+KM + TWT MI G A +G AL +++ M R ++LD
Sbjct: 385 LIDMFAKCGDVGRAQSIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLD 444
Query: 162 EVTYVGVLSACTH 174
+ ++ L+AC H
Sbjct: 445 DTVFIAALAACAH 457
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 84/184 (45%), Gaps = 14/184 (7%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M ++DV+SW +IV Y++ G A +F MPER+ V W ++ G+ R+
Sbjct: 172 ARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDM 231
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFN-------------NDIFVGIALIDMYCKCG 110
A +F M + N T+ + D+ A++ Y K G
Sbjct: 232 VTARAVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIG 291
Query: 111 DVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS-QMLRASIRLDEVTYVGVL 169
D++ A +F M K+ +W AMI G + D AL F ML R DE T V V+
Sbjct: 292 DLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVV 351
Query: 170 SACT 173
SAC
Sbjct: 352 SACA 355
>gi|354805213|gb|AER41630.1| CRR4 [Oryza nivara]
Length = 748
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 101/193 (52%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M KDV+SWT +VS Y G +D A + F MP ++ V W AMI GY +R+
Sbjct: 261 ARSVFDRMDQKDVVSWTAMVSAYAKIGDLDTANELFDHMPVKNLVSWNAMITGYNHNSRY 320
Query: 64 REALTLFREMQTSN-IRRDEFTTVRILTT---------------------FNNDIFVGIA 101
EAL F+ M R DE T V +++ + + +G A
Sbjct: 321 DEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNA 380
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDM+ KCGDV +AQ +F+KM + TWT MI G A +G AL +++ M R ++LD
Sbjct: 381 LIDMFAKCGDVGRAQSIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLD 440
Query: 162 EVTYVGVLSACTH 174
+ ++ L+AC H
Sbjct: 441 DTVFIAALAACAH 453
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 84/184 (45%), Gaps = 14/184 (7%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M ++DV+SW +IV Y++ G A +F MPER+ V W ++ G+ R+
Sbjct: 168 ARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDM 227
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFN-------------NDIFVGIALIDMYCKCG 110
A +F M + N T+ + D+ A++ Y K G
Sbjct: 228 VTARAVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIG 287
Query: 111 DVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS-QMLRASIRLDEVTYVGVL 169
D++ A +F M K+ +W AMI G + D AL F ML R DE T V V+
Sbjct: 288 DLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVV 347
Query: 170 SACT 173
SAC
Sbjct: 348 SACA 351
Score = 35.8 bits (81), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 92 FNNDIFVGIALIDMYCKC---GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALD 148
F +D+FV AL+D+Y +C G V A++VF +M+ +D +W +++ SG A+
Sbjct: 142 FGSDVFVQNALMDVYHRCGGGGGVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMG 201
Query: 149 MFSQM 153
F M
Sbjct: 202 FFEAM 206
>gi|297848728|ref|XP_002892245.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338087|gb|EFH68504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 664
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 106/193 (54%), Gaps = 21/193 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +F +M ++ SW+T++ GY++ G+++ A+Q F MPE++ V WT +I+G+ +
Sbjct: 212 MQMATTLFRSMPERNSGSWSTLIKGYVDNGELNRAKQLFELMPEKNVVSWTTLINGFSQT 271
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVG 99
+ A++ + EM ++ +E+T +L+ + D +G
Sbjct: 272 GDYETAISTYFEMLEKGLKPNEYTVAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIG 331
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
+L+DMY KCG+V+ A VF M KD +WTAMI G A+ G A+ F QM+ + +
Sbjct: 332 TSLLDMYAKCGEVDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEK 391
Query: 160 LDEVTYVGVLSAC 172
DEV ++ VL+AC
Sbjct: 392 PDEVVFLAVLTAC 404
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 22/168 (13%)
Query: 10 NMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYLRVNRFRE 65
N + D ++V Y GQ++ A Q F + P+R +LW +++GY R +
Sbjct: 155 NFVDCDSFVRVSLVDMYAKTGQLNHAFQVFEETPDRIKKESILLWNVLVNGYCRAKDMQM 214
Query: 66 ALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK 125
A TLFR M N ++T LI Y G++ +A+++F M K
Sbjct: 215 ATTLFRSMPERN--SGSWST----------------LIKGYVDNGELNRAKQLFELMPEK 256
Query: 126 DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+ +WT +I G + +G +TA+ + +ML ++ +E T VLSAC+
Sbjct: 257 NVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTVAAVLSACS 304
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 25/158 (15%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T+++ Y G+VD A F+ M +D + WTAMI G+ RF +A+ FR+M S +
Sbjct: 332 TSLLDMYAKCGEVDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEK 391
Query: 80 RDEFTTVRILTTFNNDIFVGIAL----------------------IDMYCKCGDVEKAQR 117
DE + +LT N V + L +D+ + G +++A
Sbjct: 392 PDEVVFLAVLTACLNSGEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLDEAHE 451
Query: 118 VFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQML 154
+ M + D TW A+ A H D+ Q L
Sbjct: 452 LVEYMPINPDLTTWAALY--RACKAHKSNRTDIVLQNL 487
>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
Length = 1033
Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats.
Identities = 75/226 (33%), Positives = 111/226 (49%), Gaps = 54/226 (23%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYV-------------- 48
A +F M N+DV+SW ++++GY+ G++++A + F +MPERD V
Sbjct: 162 LARRVFDRMPNRDVVSWNSMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGYGKCGR 221
Query: 49 -----------------LWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT 91
WT+MI Y++ +AL LFREM + +R D V +L+
Sbjct: 222 CELAEKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSA 281
Query: 92 FN-----------------NDI-----FVGIALIDMYCKCGDVEKAQRVFWKML-RKDKF 128
N I F+G ALIDMY KCG +E A VF + R++
Sbjct: 282 IADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIG 341
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
W +MI GLAI G ALD+F +M R I +E+T++G+LS C+H
Sbjct: 342 DWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSH 387
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 58/151 (38%), Positives = 78/151 (51%), Gaps = 18/151 (11%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
++V YI+ G++++AR+ F +MP RD V W +MI GYL+ A LF EM
Sbjct: 149 SMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELASELFDEMPE----- 203
Query: 81 DEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAIS 140
R L + N A+ID Y KCG E A++VF M KD TWT+MI +
Sbjct: 204 ------RDLVSCN-------AMIDGYGKCGRCELAEKVFETMSDKDVVTWTSMISAYVQN 250
Query: 141 GHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
ALD+F +ML +R D V VLSA
Sbjct: 251 RCPMKALDLFREMLSLGLRPDGPAIVSVLSA 281
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 29/150 (19%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-----QTSNIRRDEFT 84
G +D A F+++ + ++ A+I G+ + E+L L+ M +S + EF+
Sbjct: 55 GGLDYASSVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGV---EFS 111
Query: 85 TVRIL---------------------TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+L T D FVG +++ MY G++E A+RVF +M
Sbjct: 112 IPSVLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMP 171
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+D +W +MI G +G + A ++F +M
Sbjct: 172 NRDVVSWNSMIAGYLKAGEIELASELFDEM 201
>gi|125537150|gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indica Group]
Length = 914
Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats.
Identities = 71/205 (34%), Positives = 100/205 (48%), Gaps = 34/205 (16%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M KD +SW TI+ GY G+V+ A + F +MPER+ V W+ M+ GY +
Sbjct: 532 ARKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDL 591
Query: 64 REALTLFREMQTSN------------IRRDEFTTVRILTT-------------------- 91
A +F +M N + D V IL
Sbjct: 592 EMARVIFDKMPGKNLVTWTIMMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKR 651
Query: 92 -FNNDIFVGIALIDMYCKCGDVEKAQRVF-WKMLRKDKFTWTAMIVGLAISGHGDTALDM 149
V ALIDM+CKCG V +A VF + ++KD +W ++I G A+ GHGD AL++
Sbjct: 652 NLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALEL 711
Query: 150 FSQMLRASIRLDEVTYVGVLSACTH 174
F+QM + D VT + VLSACTH
Sbjct: 712 FAQMKQQGFNPDAVTMINVLSACTH 736
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 37/172 (21%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +DV+SW T ++ + G++ AR+ F +MPE+D V W ++DGY +
Sbjct: 501 ARKVFDEMPERDVVSWNTAMAAMVREGELAGARKLFDEMPEKDTVSWNTILDGYTKAGEV 560
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
A LF+ M N+ ++T ++ YCK GD+E A+ +F KM
Sbjct: 561 EAAFELFQRMPERNVV--SWST----------------MVSGYCKKGDLEMARVIFDKMP 602
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
K+ TWT M M AS+ LD V +L+AC +
Sbjct: 603 GKNLVTWTIM-------------------MKEASVELDVAAVVSILAACAES 635
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 41/154 (26%), Positives = 60/154 (38%), Gaps = 26/154 (16%)
Query: 22 IVSGYINRGQVDIARQYFAQM--PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+VS Y + +R+ F + P D L M+ Y R+AL F M R
Sbjct: 390 LVSAYALLRLLPSSRRVFDAIRDPHADAFLANTMLRAYALGGAPRDALAAFSAMP----R 445
Query: 80 RDEFTTVRILTTFN--------------------NDIFVGIALIDMYCKCGDVEKAQRVF 119
RD FT ++ + D FVG ALID Y K G A++VF
Sbjct: 446 RDSFTYSFLIKALSAAGVAPVRAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVF 505
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+M +D +W + + G A +F +M
Sbjct: 506 DEMPERDVVSWNTAMAAMVREGELAGARKLFDEM 539
Score = 42.0 bits (97), Expect = 0.082, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 11/80 (13%)
Query: 4 ALEIFGNMK----NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVL------WTAM 53
ALE+F MK N D ++ ++S + G VD R+YF+ M ERDY + + M
Sbjct: 708 ALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRYFSNM-ERDYGIMPQIEHYGCM 766
Query: 54 IDGYLRVNRFREALTLFREM 73
ID R +EA+ L + M
Sbjct: 767 IDLLGRGGLIKEAVDLIKSM 786
>gi|145335647|ref|NP_172798.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|110741720|dbj|BAE98806.1| hypothetical protein [Arabidopsis thaliana]
gi|332190892|gb|AEE29013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 474
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 103/200 (51%), Gaps = 26/200 (13%)
Query: 1 MGFALE---IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGY 57
MG LE +F M +DV+SW T++ GY N G ++ + F MPER+ W +I GY
Sbjct: 103 MGNMLEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGY 162
Query: 58 LRVNRFREALTLFREM-QTSNIRRDEFTTVRILTT---------------------FNN- 94
+ R E L F+ M ++ ++ T +L+ +N
Sbjct: 163 AQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKV 222
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML 154
D+ V ALIDMY KCG +E A VF + R+D +W MI GLA GHG AL++F +M
Sbjct: 223 DVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMK 282
Query: 155 RASIRLDEVTYVGVLSACTH 174
+ I D+VT+VGVL AC H
Sbjct: 283 NSGISPDKVTFVGVLCACKH 302
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 88/171 (51%), Gaps = 19/171 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M K+V+ WT++++GY+ + AR+YF PERD VLW MI GY+ +
Sbjct: 47 ANKVFCEMVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYIEMGNM 106
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
EA +LF +M R + ++N +++ Y GD+E +RVF M
Sbjct: 107 LEARSLFDQM-----------PCRDVMSWN-------TVLEGYANIGDMEACERVFDDMP 148
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQML-RASIRLDEVTYVGVLSACT 173
++ F+W +I G A +G L F +M+ S+ ++ T VLSAC
Sbjct: 149 ERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACA 199
>gi|357444867|ref|XP_003592711.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481759|gb|AES62962.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 64/195 (32%), Positives = 110/195 (56%), Gaps = 23/195 (11%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
+A ++F +M+ K+++SW +++ GY G++ +A++ F M ERD W++ IDGY++
Sbjct: 167 WAHKVFESMQGKNLVSWNSMLDGYAKCGEMAMAQKVFESMQERDVRSWSSFIDGYVKAGE 226
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIA 101
+REA+ +F +M+ + +E T V +L+ + + + +
Sbjct: 227 YREAMAVFEKMRAVGPKANEVTMVSVLSACAHLGALQKGRMMHQYIIDNLLPMTMVLQTS 286
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRK--DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
L+DMY KCG +E+A VF + + D F W AMI GLA G + +L +F +M A IR
Sbjct: 287 LVDMYAKCGAIEEALFVFRGISKSQTDVFIWNAMIGGLATHGLVEESLKLFKEMQMAGIR 346
Query: 160 LDEVTYVGVLSACTH 174
DE+TY+ +L+AC H
Sbjct: 347 SDEITYLCLLAACAH 361
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 43/193 (22%), Positives = 88/193 (45%), Gaps = 21/193 (10%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYL 58
++ +F + + + SW I+ GY N + F +M DY+ + ++
Sbjct: 66 YSYRVFSQISSPTIFSWNIIIRGYSNSKNPIHSLSIFLKMLRHGVAPDYLTYPFLVKASA 125
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN--------DIFVGI---------A 101
R+++ + +++ ++ + D F ++ + + +F + +
Sbjct: 126 RLSKQKSGVSVHAQIIKTGHESDRFIQNSLIHMYASCGNIMWAHKVFESMQGKNLVSWNS 185
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
++D Y KCG++ AQ+VF M +D +W++ I G +G A+ +F +M + +
Sbjct: 186 MLDGYAKCGEMAMAQKVFESMQERDVRSWSSFIDGYVKAGEYREAMAVFEKMRAVGPKAN 245
Query: 162 EVTYVGVLSACTH 174
EVT V VLSAC H
Sbjct: 246 EVTMVSVLSACAH 258
>gi|354805181|gb|AER41600.1| CRR4 [Oryza glaberrima]
Length = 540
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 101/193 (52%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M KDV+SWT +VS Y G +D A + F MP ++ V W AMI GY +R+
Sbjct: 164 ARSVFDRMDQKDVVSWTAMVSAYAKIGDLDTANELFDHMPVKNLVSWNAMITGYNHNSRY 223
Query: 64 REALTLFREMQTSN-IRRDEFTTVRILTT---------------------FNNDIFVGIA 101
EAL F+ M R DE T V +++ + + +G A
Sbjct: 224 DEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNA 283
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDM+ KCGDV +AQ +F+KM + TWT MI G A +G AL +++ M R ++LD
Sbjct: 284 LIDMFAKCGDVGRAQSIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLD 343
Query: 162 EVTYVGVLSACTH 174
+ ++ L+AC H
Sbjct: 344 DTVFIAALAACAH 356
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 84/185 (45%), Gaps = 14/185 (7%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M ++DV+SW +IV Y++ G A +F MPER+ V W ++ G+ R+
Sbjct: 71 ARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDM 130
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFN-------------NDIFVGIALIDMYCKCG 110
A +F M + N T+ + D+ A++ Y K G
Sbjct: 131 VTAWAVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIG 190
Query: 111 DVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS-QMLRASIRLDEVTYVGVL 169
D++ A +F M K+ +W AMI G + D AL F ML R DE T V V+
Sbjct: 191 DLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVV 250
Query: 170 SACTH 174
SAC
Sbjct: 251 SACAQ 255
>gi|297744641|emb|CBI37903.3| unnamed protein product [Vitis vinifera]
Length = 516
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 105/197 (53%), Gaps = 22/197 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
MG A ++F M +DV++WTT+VSGY G + A + F +MPE++ V WTA+I GY R
Sbjct: 243 MGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARN 302
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
+AL LF +M ++R D+FT L F + V
Sbjct: 303 GMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVV 362
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRK-DKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
ALIDMY KCG + ++VF M K D W +I LA G G+ A+ M M+R+
Sbjct: 363 SALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGA 422
Query: 159 RLDEVTYVGVLSACTHN 175
+ D++T+V +L+AC+H+
Sbjct: 423 KPDKITFVVILNACSHS 439
Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 100/222 (45%), Gaps = 52/222 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +++ SW ++SGY G + AR+ F +MPE+D V W M+ + + +
Sbjct: 114 ARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYW 173
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
EAL + E + I+ + F+ +LT F +++ + ++
Sbjct: 174 DEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSV 233
Query: 103 IDMYCKC-------------------------------GDVEKAQRVFWKMLRKDKFTWT 131
+D Y KC GD++ A +F +M K+ +WT
Sbjct: 234 LDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWT 293
Query: 132 AMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
A+I G A +G G AL++F++M+ +R D+ T+ L AC
Sbjct: 294 ALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACA 335
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 67/183 (36%), Gaps = 54/183 (29%)
Query: 43 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNND------- 95
P R L A++ + N+ EA++ + +R D T +L +
Sbjct: 21 PRRRPCLVEAIVK-LCKKNKLNEAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGK 79
Query: 96 ---------------IFVGIALIDMYCKCGD----------------------------- 111
F+ LI+MY KCG
Sbjct: 80 RVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKL 139
Query: 112 --VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVL 169
++ A+++F KM KD +W M++ A G+ D AL +S+ + I+ + ++ GVL
Sbjct: 140 GMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVL 199
Query: 170 SAC 172
+ C
Sbjct: 200 TVC 202
>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 802
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 97/181 (53%), Gaps = 21/181 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D + WT ++ Y G ++ AR F QM ++D V WT MI R +E +LFR++
Sbjct: 230 DEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLM 289
Query: 75 TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVE 113
S +R +E+T +L ++ F AL+ +Y KCG+ E
Sbjct: 290 GSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTE 349
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
A+RVF +M R D +WT++IVG A +G D AL F +LR+ + DE+T+VGVLSACT
Sbjct: 350 TARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACT 409
Query: 174 H 174
H
Sbjct: 410 H 410
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 95/189 (50%), Gaps = 22/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F + KD+ SW T++SGY N G+++ AR+ F +MP RD W A+I GY+ + EA
Sbjct: 120 LFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEA 179
Query: 67 LTLFREMQ---TSNI-------------------RRDEFTTVRILTTFNNDIFVGIALID 104
L LFR MQ +SN R E I + D V AL+D
Sbjct: 180 LDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLD 239
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVT 164
+Y KCG + +A+ +F +M KD +WT MI G +F ++ + +R +E T
Sbjct: 240 LYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYT 299
Query: 165 YVGVLSACT 173
+ GVL+AC
Sbjct: 300 FAGVLNACA 308
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 23/150 (15%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+ +V Y G + AR+ F QMP D V WT++I GY + + AL F + S +
Sbjct: 336 SALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTK 395
Query: 80 RDEFTTVRILTTFNNDIFVGIAL----------------------IDMYCKCGDVEKAQR 117
DE T V +L+ + V I L ID+ + G ++A+
Sbjct: 396 PDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAEN 455
Query: 118 VFWKM-LRKDKFTWTAMIVGLAISGHGDTA 146
+ M ++ DKF W +++ G I G+ + A
Sbjct: 456 IIDNMPMKPDKFLWASLLGGCRIHGNIELA 485
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 14/132 (10%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
I+ + + ++ A Y ++P+ L++ +I LR + + + SN
Sbjct: 38 IIELFCQQNRLKEAVDYLHRIPQPSPRLYSTLIAACLRHRKLELGKRVHAHTKASN---- 93
Query: 82 EFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISG 141
F I + LI MY KCG + AQ +F ++ +KD +W MI G A G
Sbjct: 94 ----------FIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVG 143
Query: 142 HGDTALDMFSQM 153
+ A +F +M
Sbjct: 144 RIEQARKLFDEM 155
>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
Length = 670
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 65/192 (33%), Positives = 105/192 (54%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F ++DV+S+T +V+GY +RG ++ AR F ++P +D V W AMI GY+ +
Sbjct: 117 AHKVFDRSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNY 176
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
+EAL LF+EM +N+R DE T V +++ F +++ + AL
Sbjct: 177 KEALELFKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNAL 236
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
ID Y KCG++E A +F + KD +W +I G AL +F +MLR+ ++
Sbjct: 237 IDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPND 296
Query: 163 VTYVGVLSACTH 174
VT + +L AC H
Sbjct: 297 VTMLSILHACAH 308
Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats.
Identities = 60/176 (34%), Positives = 91/176 (51%), Gaps = 23/176 (13%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
++ Y G+++ A F + +D + W +I GY +N ++EAL LF+EM S +
Sbjct: 236 LIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPN 295
Query: 82 EFTTVRILTT-----------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
+ T + IL N + +LIDMY KCGD+E A +V
Sbjct: 296 DVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQV 355
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
F ML K W AMI G A+ G + A D+FS+M + I+ D++T+VG+LSAC+H
Sbjct: 356 FNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSH 411
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 31/108 (28%)
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLA---------------- 138
D++V +LI MY + +E A +VF + +D ++TA++ G A
Sbjct: 97 DLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTALVTGYASRGYIESARNMFDEIP 156
Query: 139 ----------ISGHGDT-----ALDMFSQMLRASIRLDEVTYVGVLSA 171
ISG+ +T AL++F +M++ ++R DE T V V+SA
Sbjct: 157 VKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVISA 204
>gi|255551485|ref|XP_002516788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543876|gb|EEF45402.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 710
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 66/184 (35%), Positives = 100/184 (54%), Gaps = 23/184 (12%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
++V SW +++GY+ +D A + F +MPERD W+ MI GY + + AL LF +M
Sbjct: 394 ENVASWNALIAGYVRNRMIDRAMELFNEMPERDVFSWSTMISGYTQNEQPNLALELFHKM 453
Query: 74 QTSNIRRDEFTTVRILTTF-----------------NNDIFV----GIALIDMYCKCGDV 112
S I+ +E T V +L+ NN I V A+IDMY KCG +
Sbjct: 454 VASGIKPNEVTMVSVLSAIATSGTLKEGRWAHEYVHNNSITVSDNLSAAIIDMYAKCGSI 513
Query: 113 EKAQRVFWKMLRKDKFT--WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLS 170
A VF+++ K W A+I GLA+ GH + +L +FS + R I+L+ +T++GVL+
Sbjct: 514 NNALEVFYEIREKASTVSPWNAIICGLAVHGHANLSLKIFSDLERRHIKLNAITFIGVLT 573
Query: 171 ACTH 174
AC H
Sbjct: 574 ACCH 577
Score = 99.0 bits (245), Expect = 7e-19, Method: Composition-based stats.
Identities = 59/220 (26%), Positives = 101/220 (45%), Gaps = 52/220 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M K+++SW +++GY G VD AR F ++P +D V W +IDGY+RV R
Sbjct: 252 ARALFDEMPEKNIVSWNVMLNGYSKAGFVDSARVVFERIPNKDLVTWGTIIDGYVRVERI 311
Query: 64 REALTLFREMQTSNIRRDEFTTVRILT---------------------TFNNDIFVGIAL 102
EAL ++R M ++ ++ V +++ F+ F+ +
Sbjct: 312 NEALMMYRSMISAGWEPNDVMMVDLISGCGRTMAMTEGQQLLSAVVKMGFDCYDFIQSTI 371
Query: 103 IDMYCKCGD-------------------------------VEKAQRVFWKMLRKDKFTWT 131
I +Y CG +++A +F +M +D F+W+
Sbjct: 372 IHLYAACGRINEACLQFRIGSKENVASWNALIAGYVRNRMIDRAMELFNEMPERDVFSWS 431
Query: 132 AMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
MI G + + AL++F +M+ + I+ +EVT V VLSA
Sbjct: 432 TMISGYTQNEQPNLALELFHKMVASGIKPNEVTMVSVLSA 471
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 44/171 (25%), Positives = 83/171 (48%), Gaps = 21/171 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A IF D +S+ ++SGY+ GQ+D A + F +MP + V +T MI G+ + +
Sbjct: 120 AKSIFDVCPRSDPVSYNVMISGYVKSGQLDYACELFDEMPVKGCVSYTTMIMGFSQNECW 179
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
+A+ LF++M+ + +E T +++ F + V L
Sbjct: 180 NQAVELFKQMRNVGVVPNEVTIATLVSAYSHFGGIWACRMLHGLVIKMLFEEFVLVSTNL 239
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+ MYC C + +A+ +F +M K+ +W M+ G + +G D+A +F ++
Sbjct: 240 LRMYCVCSSLVEARALFDEMPEKNIVSWNVMLNGYSKAGFVDSARVVFERI 290
Score = 42.0 bits (97), Expect = 0.086, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 97 FVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
F+ +LI+MY KCG + A+ +F R D ++ MI G SG D A ++F +M
Sbjct: 102 FIQNSLINMYGKCGLLVDAKSIFDVCPRSDPVSYNVMISGYVKSGQLDYACELFDEM 158
Score = 39.7 bits (91), Expect = 0.46, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 41/73 (56%)
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
+I Y K G ++ A +F +M K ++T MI+G + + + A+++F QM + +
Sbjct: 138 MISGYVKSGQLDYACELFDEMPVKGCVSYTTMIMGFSQNECWNQAVELFKQMRNVGVVPN 197
Query: 162 EVTYVGVLSACTH 174
EVT ++SA +H
Sbjct: 198 EVTIATLVSAYSH 210
>gi|354805142|gb|AER41563.1| CRR4 [Oryza australiensis]
Length = 599
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 100/193 (51%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M KDV+SWT +VS Y G +D A+Q F MP ++ V W AMI GY +R+
Sbjct: 259 AHSVFDRMDQKDVVSWTAMVSAYAKIGDLDNAKQLFDHMPVKNLVSWNAMITGYNHNSRY 318
Query: 64 REALTLFREMQTSN-IRRDEFTTVRILTT---------------------FNNDIFVGIA 101
EAL F+ M R DE T V +++ + + +G A
Sbjct: 319 DEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWIGSFIGKSKIHLTVALGNA 378
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDM+ KCGDV +AQ F++M + TWT MI G A +G AL +++ M R I LD
Sbjct: 379 LIDMFAKCGDVGRAQSFFYEMKTRCIITWTTMISGFAFNGFCREALLVYNNMCREGIELD 438
Query: 162 EVTYVGVLSACTH 174
+ ++ L+AC H
Sbjct: 439 DTVFIAALAACAH 451
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 83/183 (45%), Gaps = 14/183 (7%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE 65
++F M KDV+SW +IV Y++ G A F MPER+ V W ++ G+ R
Sbjct: 168 QVFDQMVEKDVVSWNSIVGVYMSSGDATGAMGLFEAMPERNVVSWNTVVAGFARAGDMVT 227
Query: 66 ALTLFREMQTSNIRRDEFTTVRILTTFN-------------NDIFVGIALIDMYCKCGDV 112
A T+F M + N T+ + D+ A++ Y K GD+
Sbjct: 228 ARTVFDRMPSRNAVSWNLMISGYATSGDVEAAHSVFDRMDQKDVVSWTAMVSAYAKIGDL 287
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS-QMLRASIRLDEVTYVGVLSA 171
+ A+++F M K+ +W AMI G + D AL F ML R DE T V V+SA
Sbjct: 288 DNAKQLFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSA 347
Query: 172 CTH 174
C
Sbjct: 348 CAQ 350
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 92 FNNDIFVGIALIDMYCKC---GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALD 148
F D+FV AL+D+Y +C G V A++VF +M+ KD +W +++ SG A+
Sbjct: 140 FGGDVFVQNALMDVYYRCGGAGGVGAARQVFDQMVEKDVVSWNSIVGVYMSSGDATGAMG 199
Query: 149 MFSQM 153
+F M
Sbjct: 200 LFEAM 204
>gi|9958072|gb|AAG09561.1|AC011810_20 Hypothetical protein [Arabidopsis thaliana]
Length = 421
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 103/200 (51%), Gaps = 26/200 (13%)
Query: 1 MGFALE---IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGY 57
MG LE +F M +DV+SW T++ GY N G ++ + F MPER+ W +I GY
Sbjct: 50 MGNMLEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGY 109
Query: 58 LRVNRFREALTLFREM-QTSNIRRDEFTTVRILTT---------------------FNN- 94
+ R E L F+ M ++ ++ T +L+ +N
Sbjct: 110 AQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKV 169
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML 154
D+ V ALIDMY KCG +E A VF + R+D +W MI GLA GHG AL++F +M
Sbjct: 170 DVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMK 229
Query: 155 RASIRLDEVTYVGVLSACTH 174
+ I D+VT+VGVL AC H
Sbjct: 230 NSGISPDKVTFVGVLCACKH 249
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 19/164 (11%)
Query: 11 MKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 70
M K+V+ WT++++GY+ + AR+YF PERD VLW MI GY+ + EA +LF
Sbjct: 1 MVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYIEMGNMLEARSLF 60
Query: 71 REMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTW 130
+M R + ++N +++ Y GD+E +RVF M ++ F+W
Sbjct: 61 DQM-----------PCRDVMSWN-------TVLEGYANIGDMEACERVFDDMPERNVFSW 102
Query: 131 TAMIVGLAISGHGDTALDMFSQML-RASIRLDEVTYVGVLSACT 173
+I G A +G L F +M+ S+ ++ T VLSAC
Sbjct: 103 NGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACA 146
>gi|356506146|ref|XP_003521848.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Glycine max]
Length = 503
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 107/196 (54%), Gaps = 25/196 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M++++++SW ++G I G+V++A F QMP R V WT +IDGY R N+
Sbjct: 177 AAQVFYEMQHRNLVSWNVFITGLIKWGEVELACSVFNQMPARSVVSWTLVIDGYTRRNQP 236
Query: 64 REALTLFREM-QTSNIRRDEFTTVRILTTFNN----------------------DIFVGI 100
+ALTLFR+M + I E T + I N D+ +
Sbjct: 237 IKALTLFRKMIEVDGIEPTEVTLLTIFPAIANIGCIKICQSVHVYVEKRGFNAFDVRITN 296
Query: 101 ALIDMYCKCGDVEKAQRVFWKML--RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
AL+D+Y KCG + R F ++ R++ +WT+ I G A++G G AL+ F M + +
Sbjct: 297 ALLDLYAKCGCIASMSRFFQEIPDQRRNLVSWTSTISGFAMNGMGREALESFESMEKTGL 356
Query: 159 RLDEVTYVGVLSACTH 174
R + VT++GVLSAC+H
Sbjct: 357 RPNHVTFLGVLSACSH 372
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
F ++V L+ MY G + +A +VF++M ++ +W I GL G + A +F+
Sbjct: 154 FQFHVYVKTGLLQMYSSSGLLVEAAQVFYEMQHRNLVSWNVFITGLIKWGEVELACSVFN 213
Query: 152 QMLRASI 158
QM S+
Sbjct: 214 QMPARSV 220
>gi|255541938|ref|XP_002512033.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549213|gb|EEF50702.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 319
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 102/189 (53%), Gaps = 24/189 (12%)
Query: 11 MKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 70
M ++ I+W T+++GY G +D AR +F +MP RD W+AMI Y+ R+ L LF
Sbjct: 1 MPERNTITWNTMITGYSRSGNIDKARAFFEEMPLRDVGSWSAMITAYINHGRWDRGLLLF 60
Query: 71 REMQT-SNIRRDEFTTVRILTTFNN-----------------------DIFVGIALIDMY 106
REM T S ++ D+ T +L+ + ++ +G L+DMY
Sbjct: 61 REMMTNSELKPDQVTVGTVLSGCTHMGFLGLLVGKSAHGFIMKNRWELNVEIGTVLVDMY 120
Query: 107 CKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYV 166
KCG ++ A RVF M ++ TWTA+I G A G+ + L +F+ M A IR +E+T+
Sbjct: 121 VKCGYLKNAIRVFDLMKERNVMTWTALICGAAQHGYSEETLSLFNMMQEAKIRPNELTFT 180
Query: 167 GVLSACTHN 175
G+L+ C H+
Sbjct: 181 GILNVCAHS 189
>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 776
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 99/192 (51%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F M ++V +W T+++GY G++ A+ F +MP+RD V W AMI GY +
Sbjct: 326 AKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHS 385
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
EAL LF M+ R + + L+T + FVG AL
Sbjct: 386 YEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNAL 445
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+ MYCKCG +E+A +F +M KD +W MI G + G G+ AL F M R ++ D+
Sbjct: 446 LLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDD 505
Query: 163 VTYVGVLSACTH 174
T V VLSAC+H
Sbjct: 506 ATMVAVLSACSH 517
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 94/187 (50%), Gaps = 21/187 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A + F +MK +DV+SW TI++GY G++D ARQ F + P D WTAM+ GY++
Sbjct: 233 ARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMV 292
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIA-----------------LIDMY 106
EA LF M R+E + +L + V +A +I Y
Sbjct: 293 EEARELFDRMP----ERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGY 348
Query: 107 CKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYV 166
+CG + +A+ +F KM ++D +W AMI G + SGH AL +F M R RL+ ++
Sbjct: 349 AQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFS 408
Query: 167 GVLSACT 173
LS C
Sbjct: 409 SALSTCA 415
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 94/184 (51%), Gaps = 17/184 (9%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A E+F M +DV SW TI+SGY G VD AR+ F +MPE++ V W A++ Y++
Sbjct: 137 LGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQN 196
Query: 61 NRFREALTLFREMQT-----------SNIRRDEFTTVRIL--TTFNNDIFVGIALIDMYC 107
++ EA LF + +++ + R + D+ +I Y
Sbjct: 197 SKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYA 256
Query: 108 KCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVG 167
+ G++++A+++F + D FTWTAM+ G + + A ++F +M +EV++
Sbjct: 257 QNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRM----PERNEVSWNA 312
Query: 168 VLSA 171
+L+
Sbjct: 313 MLAG 316
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 18/131 (13%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
AL +F M +S+ ++SGY+ G+ ++AR F +MPERD V W MI GY+R
Sbjct: 78 ALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNL 137
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+A LF M R + ++N ++ Y + G V+ A+RVF +M
Sbjct: 138 GKARELFERMPE-----------RDVCSWN-------TILSGYAQNGCVDDARRVFDRMP 179
Query: 124 RKDKFTWTAMI 134
K+ +W A++
Sbjct: 180 EKNDVSWNALL 190
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 22/163 (13%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ D+ W +S Y+ G+ A + F +MP V + AMI GYLR F A LF E
Sbjct: 56 DSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDE 115
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA 132
M R L ++N +I Y + ++ KA+ +F +M +D +W
Sbjct: 116 MPE-----------RDLVSWN-------VMIKGYVRNRNLGKARELFERMPERDVCSWNT 157
Query: 133 MIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
++ G A +G D A +F +M ++V++ +LSA N
Sbjct: 158 ILSGYAQNGCVDDARRVFDRMPEK----NDVSWNALLSAYVQN 196
>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
Length = 619
Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats.
Identities = 74/199 (37%), Positives = 103/199 (51%), Gaps = 28/199 (14%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQ----VDIARQ---YFAQMPERDYVLWTAMIDG 56
A ++F ++ K+V +WT I+SGYI G+ +D+ R+ F M E+D V W++MI G
Sbjct: 162 AFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQG 221
Query: 57 YLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNND 95
Y +EAL LF +M R D + V +L F +
Sbjct: 222 YASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGNWASNLMDRNEFLGN 281
Query: 96 IFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155
+G ALIDMY KCG ++ A VF M +KD W A I GLA+SGH A +F QM +
Sbjct: 282 PVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEK 341
Query: 156 ASIRLDEVTYVGVLSACTH 174
+ I D T+VG+L ACTH
Sbjct: 342 SGIEPDGNTFVGLLCACTH 360
Score = 69.3 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 53/204 (25%), Positives = 82/204 (40%), Gaps = 59/204 (28%)
Query: 28 NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFT--- 84
N G + + + F Q E + L+ MI G + + F+E++ ++ M+ + D FT
Sbjct: 54 NFGNTNYSHRIFHQTKEPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPF 113
Query: 85 ----TVRILTT--------------FNNDIFVGIALIDMYCKCGDVEKAQRVF------- 119
R+L + +D FV +L+ +Y KCG ++ A +VF
Sbjct: 114 LLKACARLLDSKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKN 173
Query: 120 ---WK----------------------------MLRKDKFTWTAMIVGLAISGHGDTALD 148
W ML KD +W++MI G A +G ALD
Sbjct: 174 VAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALD 233
Query: 149 MFSQMLRASIRLDEVTYVGVLSAC 172
+F +ML R D VGVL AC
Sbjct: 234 LFFKMLNEGFRPDCYAMVGVLCAC 257
Score = 38.5 bits (88), Expect = 0.92, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 12/148 (8%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A E+F M+ KD++ W +SG G V A F QM + DG
Sbjct: 298 MDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSG-----IEPDG---- 348
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
N F L + R F ++ + T +I ++D+ + G +++A ++
Sbjct: 349 NTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVK 408
Query: 121 KM-LRKDKFTWTAMIVGLAISGHGDTAL 147
M + + W A++ G + H DT L
Sbjct: 409 SMPMEANAIVWGALLGGCRL--HRDTQL 434
>gi|345505230|gb|AEN99839.1| chlororespiratory reduction 4 [Nasturtium officinale]
Length = 614
Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 109/194 (56%), Gaps = 22/194 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +DV++W T++ GY G V A+ F QMP RD V + +M+ GY++
Sbjct: 272 AKDLFHVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNRHH 331
Query: 64 REALTLFREMQT-SNIRRDEFTTVRILTTFNN--------DIFV-------------GIA 101
EAL +F +M+ S++ DE T V +L+ D+ + G+A
Sbjct: 332 MEALEIFSDMEKESHLTPDETTLVIVLSAIAQLGQLSKAMDMHLYIVEKQFYLGGKLGVA 391
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMY KCG +++A VF + K W AMI GLAI G G++A ++ ++ R SI D
Sbjct: 392 LIDMYSKCGSIQQAMCVFEGIENKSIDHWNAMIGGLAIHGLGESAFNILLEIERRSIEPD 451
Query: 162 EVTYVGVLSACTHN 175
+T+VGVL+AC+H+
Sbjct: 452 YITFVGVLNACSHS 465
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 90/172 (52%), Gaps = 22/172 (12%)
Query: 4 ALEIFGNMKN--KDVISWTTIVSGYINRGQ-VDIARQYFAQMPERDYVLWTAMIDGYLRV 60
A E+F M K++ISW +++SGY V+IA + FA+MPE+D + W ++I GY++
Sbjct: 207 ARELFDLMPREMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIYGYVKH 266
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
R +A LF M RRD T +ID Y K G V KA+ +F
Sbjct: 267 GRMEDAKDLFHVMP----RRDVVTWA--------------TMIDGYAKLGFVHKAKTLFD 308
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS-IRLDEVTYVGVLSA 171
+M +D + +M+ G + H AL++FS M + S + DE T V VLSA
Sbjct: 309 QMPHRDVVAYNSMMAGYVQNRHHMEALEIFSDMEKESHLTPDETTLVIVLSA 360
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 25/171 (14%)
Query: 10 NMKNKDVISWTTIVSGYINRGQVDIARQY----FAQMPERDYVLWTAMIDGYLRVNRFRE 65
N+ K V+++ Y+ + R+Y FA +D LW +I + R
Sbjct: 46 NLTTKIVVAFADSRRPYLAEFARYVFREYHVCSFAPGDVKDPFLWNLVIKSHSHGVDPRR 105
Query: 66 ALTLFREMQTSNIRRDEFTTVRILTTFN---------------------NDIFVGIALID 104
AL F M + I D+F+ +L + +D+F+ LI
Sbjct: 106 ALLWFCLMLENGISVDKFSFSLVLKACSRLGFLKGGMQIHGFLRKTGIWSDLFLQNCLIG 165
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155
+Y KCG + A+++F +M ++D ++ +MI G G ++A ++F M R
Sbjct: 166 LYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYIKCGLIESARELFDLMPR 216
>gi|357125571|ref|XP_003564466.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Brachypodium distachyon]
Length = 600
Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 69/178 (38%), Positives = 101/178 (56%), Gaps = 22/178 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPE-RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 78
T +++ Y +V +AR F M E ++ V W++MI GY R+ EAL LFR+MQ +
Sbjct: 166 TGLLNLYARCEEVALARNVFDGMVEDKNLVAWSSMIGGYSRMGMVNEALGLFRDMQAVGV 225
Query: 79 RRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQR 117
DE T V +++ D+ + ALIDMY KCG +E+A+
Sbjct: 226 NPDEVTMVSVISACAKAGALDLGKWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKS 285
Query: 118 VFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
VF M+ +D W+AMIVGLA+ G + AL +FS+ML+ +R + VT+VGVLSAC H+
Sbjct: 286 VFDSMVERDTKAWSAMIVGLAMHGLAEDALGLFSRMLQLKVRPNNVTFVGVLSACAHS 343
>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
Length = 604
Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 71/195 (36%), Positives = 104/195 (53%), Gaps = 35/195 (17%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A +F M N+DV+SW ++++GY+ G++++A + F +MPERD V AMIDGY
Sbjct: 162 LARRVFDRMPNRDVVSWNSMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGY----- 216
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTFN-----------------NDI-----FVGI 100
+EM + +R D V +L+ N I F+G
Sbjct: 217 -------GKEMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGS 269
Query: 101 ALIDMYCKCGDVEKAQRVFWKML-RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMY KCG +E A VF + R++ W +MI GLAI G ALD+F +M R I
Sbjct: 270 ALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIE 329
Query: 160 LDEVTYVGVLSACTH 174
+E+T++G+LS C+H
Sbjct: 330 PNEITFLGLLSTCSH 344
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 29/150 (19%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-----QTSNIRRDEFT 84
G +D A F+++ + ++ A+I G+ + E+L L+ M +S + EF+
Sbjct: 55 GGLDYASSVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGV---EFS 111
Query: 85 TVRIL---------------------TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+L T D FVG +++ MY G++E A+RVF +M
Sbjct: 112 IPSVLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMP 171
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+D +W +MI G +G + A ++F +M
Sbjct: 172 NRDVVSWNSMIAGYLKAGEIELASELFDEM 201
>gi|255563078|ref|XP_002522543.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538234|gb|EEF39843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 530
Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 70/196 (35%), Positives = 108/196 (55%), Gaps = 22/196 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR- 59
+G+A ++F M K+VI T+++SGY+NRG V+ A + F + E+D V++ AMI+GY +
Sbjct: 198 VGYARKVFDMMMEKNVICSTSMISGYMNRGSVEDAEEIFERTVEKDVVVFNAMIEGYSKS 257
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFV 98
V +AL ++ EMQ R + T ++ F ++
Sbjct: 258 VQTAEKALEVYVEMQRYGFRPNLSTFASVIGACSVLAGFEIGQQVQGQLLKREFFTNVKT 317
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
G ALIDMY KCG +E A+R F +M K+ F+W++MI G +G D AL +F +M I
Sbjct: 318 GSALIDMYSKCGRIEDARRAFEQMPEKNVFSWSSMIDGYGKNGRPDEALQLFHKMQDCCI 377
Query: 159 RLDEVTYVGVLSACTH 174
+ VT++G LSAC H
Sbjct: 378 EPNYVTFLGALSACGH 393
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 25/158 (15%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT 85
Y+ G + ARQ F ++P+R + +I GYL++ ++++ L R + R D FT
Sbjct: 87 YLKCGCLKYARQMFDELPQRTLSAYNYLIGGYLKLGLVQDSMNLVRRLVLEGQRPDGFTY 146
Query: 86 VRIL---TTFNN----------------------DIFVGIALIDMYCKCGDVEKAQRVFW 120
IL T+ +N D + AL+D Y K G V A++VF
Sbjct: 147 SMILKASTSGDNVTLSCNLGSVVHGQILKSEVEPDDVLYTALVDSYVKSGRVGYARKVFD 206
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
M+ K+ T+MI G G + A ++F + + +
Sbjct: 207 MMMEKNVICSTSMISGYMNRGSVEDAEEIFERTVEKDV 244
>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 741
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 104/192 (54%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
AL +F M KD++SW T+++ Y GQ+D A + F +M ER+ V W ++I GY++ +
Sbjct: 376 ALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLY 435
Query: 64 REALTLFREMQTSNIRRDEFTTV---------------------RILTTFNNDIFVGIAL 102
EAL F M+ + D+ T V I T F ND+FV A+
Sbjct: 436 FEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAI 495
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+ MY K G V +A+ VF ++ KD +W ++I G A++G G A+++F M I DE
Sbjct: 496 LTMYAKSGRVPEAENVFAEIKNKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDE 555
Query: 163 VTYVGVLSACTH 174
VT+ G+LSAC H
Sbjct: 556 VTFTGLLSACNH 567
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 86/166 (51%), Gaps = 13/166 (7%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +F M K+++SW ++ Y+ Q+D A + F +MPE+D V WTAMI+GY+RV
Sbjct: 249 MTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRV 308
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFN----NDIFVGIALIDMYC--------- 107
+ +A + M NI L + N+IF I++ D C
Sbjct: 309 GKLLQAREILNLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYA 368
Query: 108 KCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
CG ++A R+F +M+ KD +W MI A +G D AL+MF++M
Sbjct: 369 HCGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEM 414
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 18/171 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M L+ F M ++V+SW +V GY+ G +D A +F ++P + V W M+ G+
Sbjct: 187 MQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHY 246
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
R EA LF EM T N L ++N A+I Y + ++ A ++F
Sbjct: 247 GRMTEARNLFNEMPTKN-----------LVSWN-------AMIGAYVRENQIDDAYKLFM 288
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+M KD +WTAMI G G A ++ + M +I G L +
Sbjct: 289 EMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIAAQTAMINGYLQS 339
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 23/173 (13%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+ +F M ++++++ +++S Y G++ AR+ F MP+R+ V W +MI GYL
Sbjct: 34 AVAVFLQMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELV 93
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+A LF M F DI+ +I Y + G++EKA+ +F +
Sbjct: 94 EDAARLFDRM------------------FKRDIYSWTLMITCYTRIGELEKARELFNLLP 135
Query: 124 -RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
++D A+I G A A +F +ML ++ V++ +LS T N
Sbjct: 136 DKQDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNV----VSWNSILSGYTKN 184
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 68/151 (45%), Gaps = 19/151 (12%)
Query: 4 ALEIFGNMKNK-DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A E+F + +K D + +++GY + A++ F +M ++ V W +++ GY + +
Sbjct: 127 ARELFNLLPDKQDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGK 186
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM 122
+ L F M N+ ++N ++D Y GD++ A F K+
Sbjct: 187 MQLGLQFFEAMGERNV-----------VSWN-------LMVDGYVGVGDLDSAWMFFKKI 228
Query: 123 LRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+ +W M+ G A G A ++F++M
Sbjct: 229 PTPNVVSWVTMLSGFAHYGRMTEARNLFNEM 259
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 67
FGN D+ I++ Y G+V A FA++ +D V W ++I GY +EA+
Sbjct: 485 FGN----DLFVKNAILTMYAKSGRVPEAENVFAEIKNKDVVSWNSLIAGYALNGCGKEAV 540
Query: 68 TLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIAL 102
LF M I DE T +L+ N+ FV L
Sbjct: 541 ELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGL 575
>gi|356557876|ref|XP_003547236.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like [Glycine max]
Length = 912
Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 70/181 (38%), Positives = 96/181 (53%), Gaps = 25/181 (13%)
Query: 18 SWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 77
SW +VSG+I VD AR+ F MPERD W+ MI GY + ++ R AL LF +M S
Sbjct: 601 SWNALVSGFIKNRMVDQARKIFDDMPERDVFSWSTMISGYAQTDQSRIALELFHKMVASG 660
Query: 78 IRRDEFTTVRILTTF-----------------NNDIFVG----IALIDMYCKCGDVEKAQ 116
I+ +E T V + + N I + ALIDMY KCG + A
Sbjct: 661 IKPNEVTMVSVFSAIATLGTLKEGRWAHEYICNESIPLNDNLRAALIDMYAKCGSINSAL 720
Query: 117 RVFWKMLRKDKFT---WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+ F+ +R F+ W A+I GLA GH LD+FS M R +I+ + +T++GVLSAC
Sbjct: 721 Q-FFNQIRDKTFSVSPWNAIICGLASHGHASMCLDVFSDMQRYNIKPNPITFIGVLSACC 779
Query: 174 H 174
H
Sbjct: 780 H 780
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 61/223 (27%), Positives = 104/223 (46%), Gaps = 52/223 (23%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A +F M +++SW +++GY G VD+AR+ F ++P++D + W MIDGY+ +
Sbjct: 452 VGEARRLFDRMPEVNLVSWNVMLNGYAKAGLVDMARELFERVPDKDVISWGTMIDGYILM 511
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
NR EAL ++R M S + +E V +++ F+ F+
Sbjct: 512 NRLHEALVMYRAMLRSGLALNEILVVNLVSACGRLNAIGDGWQLHGMVVKKGFDCYNFIQ 571
Query: 100 IALIDMYCKCG-------------------------------DVEKAQRVFWKMLRKDKF 128
+I Y CG V++A+++F M +D F
Sbjct: 572 TTIIHFYAACGMMDLACLQFEVGAKDHLESWNALVSGFIKNRMVDQARKIFDDMPERDVF 631
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+W+ MI G A + AL++F +M+ + I+ +EVT V V SA
Sbjct: 632 SWSTMISGYAQTDQSRIALELFHKMVASGIKPNEVTMVSVFSA 674
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 57/208 (27%), Positives = 95/208 (45%), Gaps = 52/208 (25%)
Query: 17 ISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS 76
IS +V GY GQ+D AR+ F MP++ V +T MI G ++ FREAL +F++M++
Sbjct: 336 ISCNIMVCGYAKAGQLDNARKLFDIMPDKGCVSYTTMIMGLVQNECFREALEVFKDMRSD 395
Query: 77 NIRRDEFTTV---------------RILTTFNNDIFV-GIALIDM-----YCKCGDVEKA 115
+ ++ T V R++ +FV G+ L+ YC C V +A
Sbjct: 396 GVVPNDLTLVNVIYACSHFGEILNCRMIHAIAIKLFVEGLVLVSTNLMRAYCLCSGVGEA 455
Query: 116 QRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ----------------------- 152
+R+F +M + +W M+ G A +G D A ++F +
Sbjct: 456 RRLFDRMPEVNLVSWNVMLNGYAKAGLVDMARELFERVPDKDVISWGTMIDGYILMNRLH 515
Query: 153 --------MLRASIRLDEVTYVGVLSAC 172
MLR+ + L+E+ V ++SAC
Sbjct: 516 EALVMYRAMLRSGLALNEILVVNLVSAC 543
Score = 41.6 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y K G ++ A+++F M K ++T MI+GL + AL++F M + +++T
Sbjct: 345 YAKAGQLDNARKLFDIMPDKGCVSYTTMIMGLVQNECFREALEVFKDMRSDGVVPNDLTL 404
Query: 166 VGVLSACTH 174
V V+ AC+H
Sbjct: 405 VNVIYACSH 413
>gi|255568986|ref|XP_002525463.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535276|gb|EEF36953.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 337
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 108/199 (54%), Gaps = 25/199 (12%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G AL F M K+ ++W +++G + G+++ AR +F MPE++ V WT +IDGY+R+
Sbjct: 8 LGNALLAFDEMPEKNSVTWNVMITGLVKWGKLEFARSFFDDMPEKNVVSWTGIIDGYVRM 67
Query: 61 NRFREALTLFREMQT-SNIRRDEFTTVRILTT---------------------FN-NDIF 97
NR E L LFR M + I E T + IL FN +DI
Sbjct: 68 NRITEGLALFRRMVSFEGIAPSEITILAILPAISGIGELQNCGLIHCLVEKRGFNSSDIR 127
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKML--RKDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155
V ++ID Y KCG + A R F ++ RK+ +WT++I G A+ G G A+ F M R
Sbjct: 128 VTNSIIDTYAKCGCIVSASRFFEEISVERKNLVSWTSIISGFAMHGMGQEAVKRFENMER 187
Query: 156 ASIRLDEVTYVGVLSACTH 174
++ + VT++ VL+AC+H
Sbjct: 188 TGLKPNRVTFLSVLNACSH 206
>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
Length = 671
Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 66/195 (33%), Positives = 102/195 (52%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A ++F +DV+SW ++ GY+ ++ AR F +M RD + W MI+GY
Sbjct: 217 LGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAIC 276
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILT---------------TFNND------IFVG 99
+ EAL LF +M+ ++ E T V +L+ T+ ND VG
Sbjct: 277 GKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVG 336
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+DMY KCG + A +VF M KD W +I G+AI G+ A +F +M A +
Sbjct: 337 TALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVE 396
Query: 160 LDEVTYVGVLSACTH 174
+++T+V +LSAC+H
Sbjct: 397 PNDITFVAILSACSH 411
>gi|255574750|ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532320|gb|EEF34121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 602
Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 74/197 (37%), Positives = 104/197 (52%), Gaps = 22/197 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
MG A +F M +DV++WTT+VSGY G V+ AR+ F MPE++ V WT++I GY R
Sbjct: 234 MGDARRLFDEMIIRDVLAWTTMVSGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARH 293
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVG 99
+ +AL LF +M NIR D+FT L T + V
Sbjct: 294 DLGHKALELFTKMMALNIRPDQFTFSSCLCASASIASLNHGKQIHGYLIRTNIRPNTIVV 353
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRK-DKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
+LIDMY KCG +E + VF M K D W +I LA G G A+ MF M+R +
Sbjct: 354 SSLIDMYSKCGCLEVGRLVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGM 413
Query: 159 RLDEVTYVGVLSACTHN 175
+ D +T + +L+AC+H+
Sbjct: 414 KPDRITLIVLLNACSHS 430
Score = 93.2 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 55/220 (25%), Positives = 102/220 (46%), Gaps = 52/220 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +++ SW ++SGY G++ AR+ F +MPE+D V W M+ Y +
Sbjct: 105 AYKVFDEMSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMPEKDVVSWNTMVIAYAKSGFC 164
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
+AL +RE++ I +E++ +L F +++ + ++
Sbjct: 165 NDALRFYRELRRLGIGYNEYSFAGLLNICVKVKELELSKQAHGQVLVAGFLSNLVISSSV 224
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLA------------------------ 138
+D Y KC ++ A+R+F +M+ +D WT M+ G A
Sbjct: 225 LDAYAKCSEMGDARRLFDEMIIRDVLAWTTMVSGYAQWGDVEAARELFDLMPEKNPVAWT 284
Query: 139 --ISGH-----GDTALDMFSQMLRASIRLDEVTYVGVLSA 171
I+G+ G AL++F++M+ +IR D+ T+ L A
Sbjct: 285 SLIAGYARHDLGHKALELFTKMMALNIRPDQFTFSSCLCA 324
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 18/120 (15%)
Query: 53 MIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDV 112
+I+ Y + + A +F EM T N L ++N ++ Y K G +
Sbjct: 92 LINMYSKCGDYPSAYKVFDEMSTRN-----------LYSWN-------GMLSGYAKLGKI 133
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+ A+++F KM KD +W M++ A SG + AL + ++ R I +E ++ G+L+ C
Sbjct: 134 KPARKLFDKMPEKDVVSWNTMVIAYAKSGFCNDALRFYRELRRLGIGYNEYSFAGLLNIC 193
>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Vitis vinifera]
Length = 635
Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 69/199 (34%), Positives = 106/199 (53%), Gaps = 28/199 (14%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +F M +DV+SW +V GY G++DIAR F +MPERD + AM+ GY++
Sbjct: 269 MENAHHLFNQMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQN 328
Query: 61 NRFREALTLFREMQTSNIRRDEF----------TTVRILTTFNNDIFV------------ 98
EAL F +M + R++ F + + L F+ + +
Sbjct: 329 GHLMEALNFFHDMLS---RKELFPDNATLLITLSAIAQLGHFDEGVALHCYIEDNGFSLS 385
Query: 99 ---GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155
G+ALIDMY KCG ++ A VF + K W A+I GLAI G G+ A ++F +M +
Sbjct: 386 EKLGVALIDMYAKCGSIDNALSVFEDIDDKSIDHWNAIIGGLAIHGLGEVAFELFMEMEK 445
Query: 156 ASIRLDEVTYVGVLSACTH 174
++ D++T++GVL+AC H
Sbjct: 446 LFVKPDDITFIGVLNACNH 464
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 80/156 (51%), Gaps = 21/156 (13%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYL 58
+G A ++F M +D +S+ +++ GY+ G V AR+ F MP +++ + W +MI GY
Sbjct: 173 LGIARQLFDRMMKRDSVSFNSMIDGYVKHGMVKSARELFDVMPMEQKNLISWNSMISGYA 232
Query: 59 RVNR-FREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQR 117
R R A LF EM +RD L ++N ++ID KCG +E A
Sbjct: 233 RSEEGLRVAWELFEEMP----KRD-------LISWN-------SMIDGCVKCGKMENAHH 274
Query: 118 VFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+F +M ++D +W M+ G A G D A +F +M
Sbjct: 275 LFNQMPKRDVVSWANMVDGYAKLGEIDIARGLFDEM 310
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 21/126 (16%)
Query: 49 LWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT----------------- 91
LW A+I + REA +F M + + D+F+ +L
Sbjct: 89 LWNAIIKSFSHGEDPREAFVIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGMQIHGLL 148
Query: 92 ----FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
+D+F+ L+ +Y +CG + A+++F +M+++D ++ +MI G G +A
Sbjct: 149 GRMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYVKHGMVKSAR 208
Query: 148 DMFSQM 153
++F M
Sbjct: 209 ELFDVM 214
>gi|255552151|ref|XP_002517120.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543755|gb|EEF45283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 477
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 103/186 (55%), Gaps = 21/186 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A E+F NM +++++ TT+VSGY+ G+++ AR F QM E+D + W+ MI GY
Sbjct: 276 MDMAKELFTNMSSRNLVVSTTMVSGYLKVGRIEDARLIFNQMDEKDLICWSIMISGYAES 335
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
++ +EAL LF EMQ I DE T + +++ F + V
Sbjct: 336 DQPQEALHLFNEMQFLGIEPDEVTMLSVISACAHLGVLDQAKRIHMFVDKNGFGKALSVN 395
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMY KCG +E A+ VF KM ++ +WT+MI AI G ++AL+ F QM ++
Sbjct: 396 NALIDMYAKCGCLEAARAVFEKMQIRNVISWTSMINAFAIHGDANSALNYFHQMKEENVE 455
Query: 160 LDEVTY 165
+ VT+
Sbjct: 456 PNAVTF 461
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 91/213 (42%), Gaps = 52/213 (24%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
KD T ++ Y+ G++ AR F +M RD V W+ MI+GY + F +AL LF EM
Sbjct: 157 KDPFLQTGLMGMYVGCGKILEARLVFDKMSYRDVVTWSTMINGYYQGGHFDDALQLFEEM 216
Query: 74 QTSNIRRDEFTTVRILTTF------------------NN------------DIFVGIALI 103
++SN+ D+ I++ NN ++ G +
Sbjct: 217 RSSNVEPDKMVLSTIISACARAKNLGYGKEVHDLIIENNFALDPHLESGLISLYAGCGCM 276
Query: 104 DM----------------------YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISG 141
DM Y K G +E A+ +F +M KD W+ MI G A S
Sbjct: 277 DMAKELFTNMSSRNLVVSTTMVSGYLKVGRIEDARLIFNQMDEKDLICWSIMISGYAESD 336
Query: 142 HGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
AL +F++M I DEVT + V+SAC H
Sbjct: 337 QPQEALHLFNEMQFLGIEPDEVTMLSVISACAH 369
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%)
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
F D F+ L+ MY CG + +A+ VF KM +D TW+ MI G GH D AL +F
Sbjct: 155 FYKDPFLQTGLMGMYVGCGKILEARLVFDKMSYRDVVTWSTMINGYYQGGHFDDALQLFE 214
Query: 152 QMLRASIRLDEVTYVGVLSACT 173
+M +++ D++ ++SAC
Sbjct: 215 EMRSSNVEPDKMVLSTIISACA 236
>gi|224097410|ref|XP_002310922.1| predicted protein [Populus trichocarpa]
gi|222850742|gb|EEE88289.1| predicted protein [Populus trichocarpa]
Length = 554
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 108/202 (53%), Gaps = 28/202 (13%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ A ++F +M ++V+ W ++++GY+ RG +D AR+ F +MPER+ V WT MI GY +
Sbjct: 183 LASARKVFDDMSERNVVCWNSMLAGYMRRGNLDGARRIFYEMPERNVVSWTTMISGYAKN 242
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILT---------------TFNNDIFVGI----- 100
+ ++AL LF +M+ + + D+ + LT ++ D FVG
Sbjct: 243 GKCKQALNLFDQMRKAGVELDQVVLLAALTACAELGDLKMGMWIHSYIQDTFVGSNQRVL 302
Query: 101 -----ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155
ALI MY CG +++A VF M + +WT++I A G+ L++F M R
Sbjct: 303 VSLNNALIHMYASCGMIDEAYEVFRWMPERSAVSWTSLITAFAKQGYAQAVLEIFRSMQR 362
Query: 156 ---ASIRLDEVTYVGVLSACTH 174
+ R D +T++GVL AC+H
Sbjct: 363 LGTSEARPDGITFIGVLCACSH 384
>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 599
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 101/176 (57%), Gaps = 20/176 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+++ Y+ G +D AR+ F ++PE++ V+W ++I GY ++ E + L REM SN++
Sbjct: 247 AALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLK 306
Query: 80 RDEFTTVRILTT------FNN--------------DIFVGIALIDMYCKCGDVEKAQRVF 119
D FT +L+ FN D+F+G ALIDMY KCG + A++VF
Sbjct: 307 PDRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGIWDVFIGTALIDMYAKCGFIGAARKVF 366
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
+M ++ TW A++ G A G ++A+++FS+M + R D +T++ VL AC H+
Sbjct: 367 DQMNERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHS 422
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 87/178 (48%), Gaps = 23/178 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-QTSNI 78
+++++ Y+ G++ A+Q F + +D V W A+I GY R ++ +F+EM + +
Sbjct: 144 SSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGMVLDSFGVFKEMVEVKEV 203
Query: 79 RRDEFTTVRILTT----------------------FNNDIFVGIALIDMYCKCGDVEKAQ 116
R +E T + ++ + + ALI++Y KCG ++ A+
Sbjct: 204 RPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGYLDGAR 263
Query: 117 RVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
++F ++ K+ W ++I G G + +++ +M ++++ D T GVLSAC
Sbjct: 264 KLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLSACAQ 321
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 23/176 (13%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT-SNI 78
T I++ +++ +D A Q F Q E D ++ AMI Y A++++ +M+ NI
Sbjct: 42 TKIINSFLSHACLDYATQVFNQTQEPDGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNI 101
Query: 79 RRDEFT---------------------TVRILTTFNNDIFVGIALIDMYCKCGDVEKAQR 117
D++T V + + D F+ +L++ Y CG++ AQ+
Sbjct: 102 LGDKYTYPFVFKACASQFAVEKGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQ 161
Query: 118 VFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRA-SIRLDEVTYVGVLSAC 172
VF + KD W A+I G A G + +F +M+ +R +E T +G++ AC
Sbjct: 162 VFDEFDAKDVVFWNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVAC 217
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 22/164 (13%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV T ++ Y G + AR+ F QM ER+ W A++ GY + A+ LF EM+
Sbjct: 342 DVFIGTALIDMYAKCGFIGAARKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMR 401
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT----- 129
S R D T + +L + G VE ++ F ML+ K
Sbjct: 402 ESGARPDSITFLAVLHACAHS--------------GLVENGKQYFDLMLQYYKIPPRVEH 447
Query: 130 WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+ M+ L +G A ++ M+ + + V + +LSAC+
Sbjct: 448 YGCMVDLLGRAGLLQEARELIKMMV---VEPNVVVWGALLSACS 488
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE 44
+G A ++F M ++V +W I+SGY + GQ + A + F++M E
Sbjct: 359 IGAARKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMRE 402
>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 66/192 (34%), Positives = 105/192 (54%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +D ISW +I+SG++ GQ+ A F MP R V WTAMI GY R+ +
Sbjct: 173 AHKVFDGMVERDAISWNSIISGHVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSY 232
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTF-----------------NNDIF----VGIAL 102
+AL +FR+MQ + DE + + +L N + + AL
Sbjct: 233 ADALYVFRQMQIVGVEPDEISIISVLPACAQLGALEVGKWIHMYCDRNGLLRKTSICNAL 292
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
++MY KCG + +A ++F +M + D +W+ MI GLA G A+++F +M +A I +
Sbjct: 293 MEMYSKCGCIGQAYQLFDQMSKGDVISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNG 352
Query: 163 VTYVGVLSACTH 174
+T++G+LSAC H
Sbjct: 353 ITFLGLLSACAH 364
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 91/248 (36%), Gaps = 76/248 (30%)
Query: 3 FALEIFGNMKN--------KDVISWTTIVSGYINRGQVDI---------ARQYFAQMPER 45
F + I N KN VI ++ S ++ VD+ A F Q+ E
Sbjct: 16 FFVPILQNCKNIVELKSIHAHVIKYSLSQSSFLVTKMVDVCDKTEDLGYASLLFKQVKEP 75
Query: 46 DYVLWTAMIDGYLRVNRFREALTLFREM------QTSN-IRRDEFT------TVRILTTF 92
+ L+ AMI + + A+ ++EM ++ N I D FT + L +
Sbjct: 76 NGYLYNAMIRAHTHNKVYALAILFYKEMLRLKDPESENPIFPDRFTFPFVIKSCSGLVCY 135
Query: 93 N---------------NDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF--------- 128
N ++I + ALIDMY KC + A +VF M+ +D
Sbjct: 136 NLGKQVHAHLCKFGPKSNITMENALIDMYTKCASLLDAHKVFDGMVERDAISWNSIISGH 195
Query: 129 ----------------------TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYV 166
+WTAMI G G AL +F QM + DE++ +
Sbjct: 196 VGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDEISII 255
Query: 167 GVLSACTH 174
VL AC
Sbjct: 256 SVLPACAQ 263
Score = 38.9 bits (89), Expect = 0.84, Method: Composition-based stats.
Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 18/152 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP----ERDYVLWTAMIDG 56
+G A ++F M DVISW+T++ G N G+ A + F +M E + + + ++
Sbjct: 302 IGQAYQLFDQMSKGDVISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGITFLGLLSA 361
Query: 57 YLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQ 116
+ E L F M E L+D+ + G + +A
Sbjct: 362 CAHAGFWNEGLAYFDSMSKDYHIEPEVEHYG-------------CLVDILGRAGRLSQAL 408
Query: 117 RVFWKM-LRKDKFTWTAMIVGLAISGHGDTAL 147
V KM ++ D W +++ + D A+
Sbjct: 409 DVIEKMPMKPDSKIWGSLLSSCRTHSNLDIAI 440
>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
Length = 824
Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 70/196 (35%), Positives = 100/196 (51%), Gaps = 21/196 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A E+F M ++V SW T+++GY G +D AR F MP++D V W AM+ Y ++
Sbjct: 371 MEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQI 430
Query: 61 NRFREALTLFREMQTSN--IRRDEFTTVR-------------------ILTTFNNDIFVG 99
E L LF+EM + R F V I + FVG
Sbjct: 431 GFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVG 490
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+ MY KCG +E+A F +M +D +W MI G A G G AL++F M + S +
Sbjct: 491 NALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTK 550
Query: 160 LDEVTYVGVLSACTHN 175
D++T VGVL+AC+H+
Sbjct: 551 PDDITLVGVLAACSHS 566
Score = 85.1 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 13/182 (7%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +DV+SW T+VSGY RG + AR+ F P RD WTA++ GY +
Sbjct: 281 AQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGML 340
Query: 64 REALTLFREMQTSN-IRRDEFTTV---RILTTFNNDIFVGI---------ALIDMYCKCG 110
EA +F M N + + R + ++F + ++ Y + G
Sbjct: 341 EEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAG 400
Query: 111 DVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLS 170
+++A+ +F M +KD +W AM+ + G + L +F +M R ++ + VLS
Sbjct: 401 MLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLS 460
Query: 171 AC 172
C
Sbjct: 461 TC 462
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 47/150 (31%), Positives = 74/150 (49%), Gaps = 18/150 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F + D ISW +++GY+ R Q++ A++ F +MP+RD V W M+ GY R
Sbjct: 250 ARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDM 309
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
EA LF + IR D+F A++ Y + G +E+A+RVF M
Sbjct: 310 AEARRLF---DVAPIR---------------DVFTWTAIVSGYAQNGMLEEAKRVFDAMP 351
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
K+ +W AM+ + A ++F M
Sbjct: 352 DKNAVSWNAMMAAYVQRRMMEEAKELFDAM 381
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 53/169 (31%), Positives = 82/169 (48%), Gaps = 22/169 (13%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M KD +S+ ++S + N G V +AR YF PE+D V W M+ Y+R R +EA
Sbjct: 191 LFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEA 250
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKD 126
LF R E+ + ++N AL+ Y + +E+AQ++F KM ++D
Sbjct: 251 RELFDS-------RTEWDAI----SWN-------ALMAGYVQRSQIEEAQKMFNKMPQRD 292
Query: 127 KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
+W M+ G A G A +F A IR D T+ ++S N
Sbjct: 293 VVSWNTMVSGYARRGDMAEARRLFDV---APIR-DVFTWTAIVSGYAQN 337
Score = 42.7 bits (99), Expect = 0.059, Method: Composition-based stats.
Identities = 35/183 (19%), Positives = 71/183 (38%), Gaps = 44/183 (24%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM- 73
+VI ++ ++ G+V A + FA MP R + M+ GY R +AL+ FR +
Sbjct: 106 EVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIP 165
Query: 74 ------------------QTSNIR--------RDEFTTVRILTTFNNDIFVGIA------ 101
+++R +D + ++++ N V +A
Sbjct: 166 RPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDL 225
Query: 102 -----------LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMF 150
++ Y + G +++A+ +F D +W A++ G + A MF
Sbjct: 226 APEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMF 285
Query: 151 SQM 153
++M
Sbjct: 286 NKM 288
>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 748
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 111/192 (57%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F + K+V+ + T++ G + G+V+ +++ F +M ERD + WT+MI G+ +
Sbjct: 197 ARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLD 256
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
R+A+ +FREM+ N++ D++T +LT + ++IFV AL
Sbjct: 257 RDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASAL 316
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMYCKC +++ A+ VF KM K+ +WTAM+VG +G+ + A+ FS M + I D+
Sbjct: 317 VDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDD 376
Query: 163 VTYVGVLSACTH 174
T V+S+C +
Sbjct: 377 FTLGSVISSCAN 388
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 103/226 (45%), Gaps = 54/226 (23%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ +A ++F M + ++ SW TI+S Y G+V F MP RD V W ++I GY
Sbjct: 60 IPYACKVFDQMPHPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGC 119
Query: 61 NRFREALTLFREMQTS----NIRRDEFTTVRILTT-------------------FNNDIF 97
+++ + M + N+ R F+T+ IL + F + +F
Sbjct: 120 GLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVF 179
Query: 98 VGIALIDMYCK-------------------------------CGDVEKAQRVFWKMLRKD 126
VG L+DMY K CG VE ++R+F++M +D
Sbjct: 180 VGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERD 239
Query: 127 KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+WT+MI G +G A+D+F +M ++++D+ T+ VL+AC
Sbjct: 240 SISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTAC 285
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 21/175 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+ +V Y + A F +M ++ V WTAM+ GY + EA+ F +MQ I
Sbjct: 314 SALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIE 373
Query: 80 RDEFTTVRILTTFNND---------------------IFVGIALIDMYCKCGDVEKAQRV 118
D+FT ++++ N I V AL+ +Y KCG +E + R+
Sbjct: 374 PDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRL 433
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
F ++ KD+ TWTA++ G A G + + +F ML ++ D+VT++GVLSAC+
Sbjct: 434 FNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACS 488
Score = 37.0 bits (84), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 57/143 (39%), Gaps = 18/143 (12%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQM----PERDYVLWTAMIDGYLRVNR 62
+F + KD ++WT +VSGY G+ + F M + D V + ++ R
Sbjct: 433 LFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGL 492
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM 122
+ +F M +E V I + +ID++ + G +E+A+ KM
Sbjct: 493 VEKGNQIFESMI------NEHGIVPIQDHYT-------CMIDLFSRAGRIEEARNFINKM 539
Query: 123 -LRKDKFTWTAMIVGLAISGHGD 144
D +W ++ G+ D
Sbjct: 540 PFSPDAISWATLLSSCRFYGNMD 562
>gi|242054205|ref|XP_002456248.1| hypothetical protein SORBIDRAFT_03g032860 [Sorghum bicolor]
gi|241928223|gb|EES01368.1| hypothetical protein SORBIDRAFT_03g032860 [Sorghum bicolor]
Length = 402
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 94/181 (51%), Gaps = 21/181 (11%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
DV+ T +V G VD AR F MP+RD+V W AMI GY+ V R REAL LF EM
Sbjct: 178 PDVVCVTAMVGALAAGGDVDAARGLFDGMPQRDHVAWNAMIAGYVHVGRSREALRLFDEM 237
Query: 74 QTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDV 112
++ E T V +LT + +G AL+DMY KCG V
Sbjct: 238 LSAGTTVGEATLVSVLTACAQIGALDRGKWVHWYVRSRGMQMSVKLGTALVDMYSKCGAV 297
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
A VF M ++ +TWT+ + GLA++G G L +F +M+ A I+ + V++V VL C
Sbjct: 298 VTAMEVFESMAERNVYTWTSAVSGLAMNGMGVECLQLFKRMVSAGIQPNGVSFVAVLGGC 357
Query: 173 T 173
+
Sbjct: 358 S 358
>gi|449505835|ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g02750-like [Cucumis sativus]
Length = 741
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 104/192 (54%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
AL +F M KD++SW T+++ Y GQ+D A + F +M ER+ V W ++I GY++ +
Sbjct: 376 ALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLY 435
Query: 64 REALTLFREMQTSNIRRDEFTTV---------------------RILTTFNNDIFVGIAL 102
EAL F M+ + D+ T V I T F ND+FV A+
Sbjct: 436 FEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAI 495
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+ MY K G V +A+ VF ++ KD +W ++I G A++G G A+++F M I DE
Sbjct: 496 LTMYAKSGRVPEAENVFAEIKXKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDE 555
Query: 163 VTYVGVLSACTH 174
VT+ G+LSAC H
Sbjct: 556 VTFTGLLSACNH 567
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 86/166 (51%), Gaps = 13/166 (7%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +F M K+++SW ++ Y+ Q+D A + F +MPE+D V WTAMI+GY+RV
Sbjct: 249 MTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRV 308
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFN----NDIFVGIALIDMYC--------- 107
+ +A + M NI L + N+IF I++ D C
Sbjct: 309 GKLLQAREILNLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYA 368
Query: 108 KCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
CG ++A R+F +M+ KD +W MI A +G D AL+MF++M
Sbjct: 369 HCGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEM 414
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 18/171 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M L+ F M ++V+SW +V GY+ G +D A +F ++P + V W M+ G+
Sbjct: 187 MQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHY 246
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
R EA LF EM T N L ++N A+I Y + ++ A ++F
Sbjct: 247 GRMTEARNLFNEMPTKN-----------LVSWN-------AMIGAYVRENQIDDAYKLFM 288
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+M KD +WTAMI G G A ++ + M +I G L +
Sbjct: 289 EMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIAAQTAMINGYLQS 339
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 23/173 (13%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+ +F M ++++++ +++S Y G++ AR+ F MP+R+ V W +MI GYL
Sbjct: 34 AVAVFLKMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELV 93
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+A LF M F DI+ +I Y + G++EKA+ +F +
Sbjct: 94 EDAARLFDRM------------------FKRDIYSWTLMITCYTRIGELEKARELFNLLP 135
Query: 124 -RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
++D A+I G A A +F +ML ++ V++ +LS T N
Sbjct: 136 DKQDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNV----VSWNSILSGYTKN 184
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 68/151 (45%), Gaps = 19/151 (12%)
Query: 4 ALEIFGNMKNK-DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A E+F + +K D + +++GY + A++ F +M ++ V W +++ GY + +
Sbjct: 127 ARELFNLLPDKQDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGK 186
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM 122
+ L F M N+ ++N ++D Y GD++ A F K+
Sbjct: 187 MQLGLQFFEAMGERNV-----------VSWN-------LMVDGYVGVGDLDSAWMFFKKI 228
Query: 123 LRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+ +W M+ G A G A ++F++M
Sbjct: 229 PTPNVVSWVTMLSGFAHYGRMTEARNLFNEM 259
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 67
FGN D+ I++ Y G+V A FA++ +D V W ++I GY +EA+
Sbjct: 485 FGN----DLFVKNAILTMYAKSGRVPEAENVFAEIKXKDVVSWNSLIAGYALNGCGKEAV 540
Query: 68 TLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIAL 102
LF M I DE T +L+ N+ FV L
Sbjct: 541 ELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGL 575
>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
Length = 768
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 107/195 (54%), Gaps = 26/195 (13%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M+ KDV SWT++++G+I ++ AR+ F +MP R+ V WTAMI GY++
Sbjct: 408 ACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVP 467
Query: 64 REALTLFREMQTSNIRRDEFTTVRIL------------------------TTFNNDIFVG 99
L LF+EM+ +D T + I+ T + D+ V
Sbjct: 468 IPGLELFQEMRAEG--KDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVN 525
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+DMY K G + A ++F +M ++D F+WT MI GLA+ G G AL+ FS M ++
Sbjct: 526 NALMDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGXX 585
Query: 160 LDEVTYVGVLSACTH 174
+EVT + VLSAC+H
Sbjct: 586 PNEVTLLSVLSACSH 600
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 81/206 (39%), Gaps = 55/206 (26%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
+++ Y G A++ F + D V WT +I YL ++ +A ++F + S +R D
Sbjct: 294 LLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPD 353
Query: 82 EFTTVRILTT---------------------FNNDIFVGIALIDMYC------------- 107
F V ++ +D VG ALIDMY
Sbjct: 354 SFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFK 413
Query: 108 ------------------KCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDM 149
KC D+E A+R+F +M ++ +WTAMI G L++
Sbjct: 414 TMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLEL 473
Query: 150 FSQMLRASIR--LDEVTYVGVLSACT 173
F +M RA + +T V VLS C
Sbjct: 474 FQEM-RAEGKDWPTVITIVAVLSGCA 498
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%)
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L++ Y + G AQ+VF + D +WT +I + A +FS + + +R D
Sbjct: 294 LLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPD 353
Query: 162 EVTYVGVLSACTH 174
VG +SAC H
Sbjct: 354 SFCVVGAVSACGH 366
Score = 38.9 bits (89), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D I ++ Y G +++A F M +D WT++++G+++ N A +F EM
Sbjct: 388 DPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMP 447
Query: 75 TSN 77
N
Sbjct: 448 MRN 450
>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 980
Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 101/195 (51%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A E+F +M +++ SW T+++GY G + AR++F MP+RD V W A+I GY +
Sbjct: 313 MDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQS 372
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
+ EAL +F E++ + T L+T + FVG
Sbjct: 373 GHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVG 432
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+ MY KCG +++A F + KD +W M+ G A G G AL +F M A ++
Sbjct: 433 NALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVK 492
Query: 160 LDEVTYVGVLSACTH 174
DE+T VGVLSAC+H
Sbjct: 493 PDEITMVGVLSACSH 507
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 27/193 (13%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A +F M +D ISW T++SGY G + AR+ F + P RD WTAM+ GY++
Sbjct: 220 LGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQN 279
Query: 61 NRFREALTLFREMQTSN------------------IRRDEFTTV--RILTTFNNDIFVGI 100
EA T F EM N I R+ F ++ R ++++N
Sbjct: 280 GMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWN------- 332
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
+I Y + GD+ +A++ F M ++D +W A+I G A SGH + AL+MF ++ + L
Sbjct: 333 TMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESL 392
Query: 161 DEVTYVGVLSACT 173
+ T+ LS C
Sbjct: 393 NRATFGCALSTCA 405
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 89/186 (47%), Gaps = 21/186 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A +F M KDV+SW +++SGY G VD AR+ F MPE++ + W ++ Y+
Sbjct: 127 LGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHN 186
Query: 61 NRFREALTLFRE-----------MQTSNIRRDEFTTVRILTTFNN----DIFVGIALIDM 105
R EA LF + +R+ + R L F+ D +I
Sbjct: 187 GRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWL--FDKMPVRDAISWNTMISG 244
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y + G + +A+R+F + +D FTWTAM+ G +G D A F +M +EV+Y
Sbjct: 245 YAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEK----NEVSY 300
Query: 166 VGVLSA 171
+++
Sbjct: 301 NAMIAG 306
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 22/165 (13%)
Query: 11 MKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 70
+K+ D++ W +S ++ G D A F MP R V + AMI GYLR ++F A LF
Sbjct: 44 VKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLF 103
Query: 71 REMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTW 130
+M RD F+ +LT + + C+ GD A+R+F M KD +W
Sbjct: 104 DQMP----ERDLFSWNVMLTGYVRN-----------CRLGD---ARRLFDLMPEKDVVSW 145
Query: 131 TAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
+++ G A +G+ D A ++F M + +++ G+L+A HN
Sbjct: 146 NSLLSGYAQNGYVDEAREVFDNMPEK----NSISWNGLLAAYVHN 186
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 18/147 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
AL +F M + +S+ ++SGY+ + ++AR F QMPERD W M+ GY+R R
Sbjct: 68 ALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRL 127
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+A LF M ++ ++N +L+ Y + G V++A+ VF M
Sbjct: 128 GDARRLFDLMPEKDV-----------VSWN-------SLLSGYAQNGYVDEAREVFDNMP 169
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMF 150
K+ +W ++ +G + A +F
Sbjct: 170 EKNSISWNGLLAAYVHNGRIEEACLLF 196
>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 646
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 99/184 (53%), Gaps = 21/184 (11%)
Query: 12 KNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFR 71
++ +++ W ++ GY+ G AR F +M +R V W MI GY F++A+ +FR
Sbjct: 204 RDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFR 263
Query: 72 EMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCG 110
EM+ +IR + T V +L + D +G ALIDMY KCG
Sbjct: 264 EMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCG 323
Query: 111 DVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLS 170
+EKA VF ++ R++ TW+AMI G AI G A+D F +M +A +R +V Y+ +L+
Sbjct: 324 IIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLT 383
Query: 171 ACTH 174
AC+H
Sbjct: 384 ACSH 387
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 79/211 (37%), Gaps = 69/211 (32%)
Query: 32 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE--ALTLFREMQTSN-IRRDEFTTVRI 88
+D A + F QMP+R+ W +I G+ + + A+TLF EM + + + FT +
Sbjct: 75 LDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSV 134
Query: 89 LTT---------------------FNNDIFVGIALIDMYCKC------------------ 109
L F D FV L+ MY C
Sbjct: 135 LKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKD 194
Query: 110 ---------------------------GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGH 142
GD + A+ +F KM ++ +W MI G +++G
Sbjct: 195 MVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGF 254
Query: 143 GDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
A+++F +M + IR + VT V VL A +
Sbjct: 255 FKDAVEVFREMKKGDIRPNYVTLVSVLPAIS 285
>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
Length = 514
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 106/192 (55%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M + +W +++G+ + A + F +M ERD V WTA+I GY +
Sbjct: 64 AGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYG 123
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
E+L +F +M+ + ++ D F +L+ F DI VG AL
Sbjct: 124 DESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSAL 183
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY K G +E A +VF KM ++++ +W ++I G A G G+ A+ +F QML+A I+ +E
Sbjct: 184 VDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNE 243
Query: 163 VTYVGVLSACTH 174
+++VGVLSAC+H
Sbjct: 244 ISFVGVLSACSH 255
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 73/140 (52%), Gaps = 19/140 (13%)
Query: 35 ARQYFAQMP-ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFN 93
A Y +M E D V+ TA++ Y R +A +F +M + R T+N
Sbjct: 32 AHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHVFDKMSERSTR-----------TWN 80
Query: 94 NDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
A+I + + D++KA ++F++M +D +WTA+I G A +G+GD +L++F+QM
Sbjct: 81 -------AMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQM 133
Query: 154 LRASIRLDEVTYVGVLSACT 173
+ ++ D VLSAC
Sbjct: 134 RKTGMKSDRFIMGSVLSACA 153
>gi|147841473|emb|CAN62101.1| hypothetical protein VITISV_033310 [Vitis vinifera]
Length = 396
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 112/197 (56%), Gaps = 23/197 (11%)
Query: 1 MGFALEIFGNMKN--KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYL 58
MG ++ + KN ++I T ++ Y+ G VD R F M RD V W+AMI GY
Sbjct: 24 MGLRIKKLXDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVXWSAMIAGYA 83
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIF 97
+ R EAL LF M+++ I+ ++ T V +L+ ++++
Sbjct: 84 QNGRSNEALELFEXMKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVY 143
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
V AL+ MY KCG++ KA+++F K+ ++D TW +MI+GLAI+G + A+ ++++M
Sbjct: 144 VASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIE 203
Query: 158 IRLDEVTYVGVLSACTH 174
++ + +T+VG+L+ACTH
Sbjct: 204 VKPNNITFVGLLTACTH 220
>gi|302142629|emb|CBI19832.3| unnamed protein product [Vitis vinifera]
Length = 544
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 107/223 (47%), Gaps = 49/223 (21%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A ++F M +D +SWTT+++GY+ G++D ARQ+ M E+ V W AMI GY+
Sbjct: 208 MAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHH 267
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIF----------------------- 97
F EAL +FR+M I+ DEFT +L+ N F
Sbjct: 268 GFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFS 327
Query: 98 --VGIALIDMYCKCGDVEKAQRVFWKMLRK------------------------DKFTWT 131
V AL +Y KCG V++A++VF +M K D +W
Sbjct: 328 LSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYAAHCLFLTMPYLDSVSWN 387
Query: 132 AMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
AMI L GHG AL++F ML+ I D +T++ VLS C+H
Sbjct: 388 AMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSH 430
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 95/234 (40%), Gaps = 64/234 (27%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVN 61
A +F ++ D+++ TT+++ + + G ++AR+ F P RD V + AMI GY N
Sbjct: 67 AHHLFDEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNN 126
Query: 62 RFREALTLFREMQTSNIRRDEFTTVRILTTFN---------NDIFVGI------------ 100
A+ LFR++ + R D FT +L I +
Sbjct: 127 DGFGAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVL 186
Query: 101 -ALIDMYCKCG---------DVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDT----- 145
AL+ ++ KC + A+++F +M +D+ +WT MI G +G D
Sbjct: 187 NALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFL 246
Query: 146 --------------------------ALDMFSQMLRASIRLDEVTYVGVLSACT 173
AL+MF +M I+ DE TY VLSAC
Sbjct: 247 DGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACA 300
>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 766
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 101/195 (51%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A E+F +M +++ SW T+++GY G + AR++F MP+RD V W A+I GY +
Sbjct: 313 MDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQS 372
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
+ EAL +F E++ + T L+T + FVG
Sbjct: 373 GHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVG 432
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+ MY KCG +++A F + KD +W M+ G A G G AL +F M A ++
Sbjct: 433 NALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVK 492
Query: 160 LDEVTYVGVLSACTH 174
DE+T VGVLSAC+H
Sbjct: 493 PDEITMVGVLSACSH 507
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 27/193 (13%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A +F M +D ISW T++SGY G + AR+ F + P RD WTAM+ GY++
Sbjct: 220 LGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQN 279
Query: 61 NRFREALTLFREMQTSN------------------IRRDEFTTV--RILTTFNNDIFVGI 100
EA T F EM N I R+ F ++ R ++++N
Sbjct: 280 GMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWN------- 332
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
+I Y + GD+ +A++ F M ++D +W A+I G A SGH + AL+MF ++ + L
Sbjct: 333 TMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESL 392
Query: 161 DEVTYVGVLSACT 173
+ T+ LS C
Sbjct: 393 NRATFGCALSTCA 405
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 89/186 (47%), Gaps = 21/186 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A +F M KDV+SW +++SGY G VD AR+ F MPE++ + W ++ Y+
Sbjct: 127 LGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHN 186
Query: 61 NRFREALTLFRE-----------MQTSNIRRDEFTTVRILTTFNN----DIFVGIALIDM 105
R EA LF + +R+ + R L F+ D +I
Sbjct: 187 GRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWL--FDKMPVRDAISWNTMISG 244
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y + G + +A+R+F + +D FTWTAM+ G +G D A F +M +EV+Y
Sbjct: 245 YAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEK----NEVSY 300
Query: 166 VGVLSA 171
+++
Sbjct: 301 NAMIAG 306
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 22/165 (13%)
Query: 11 MKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 70
+K+ D++ W +S ++ G D A F MP R V + AMI GYLR ++F A LF
Sbjct: 44 VKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLF 103
Query: 71 REMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTW 130
+M RD F+ +LT + + C+ GD A+R+F M KD +W
Sbjct: 104 DQMP----ERDLFSWNVMLTGYVRN-----------CRLGD---ARRLFDLMPEKDVVSW 145
Query: 131 TAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
+++ G A +G+ D A ++F M + +++ G+L+A HN
Sbjct: 146 NSLLSGYAQNGYVDEAREVFDNMPEK----NSISWNGLLAAYVHN 186
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 18/147 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
AL +F M + +S+ ++SGY+ + ++AR F QMPERD W M+ GY+R R
Sbjct: 68 ALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRL 127
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+A LF M ++ ++N +L+ Y + G V++A+ VF M
Sbjct: 128 GDARRLFDLMPEKDV-----------VSWN-------SLLSGYAQNGYVDEAREVFDNMP 169
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMF 150
K+ +W ++ +G + A +F
Sbjct: 170 EKNSISWNGLLAAYVHNGRIEEACLLF 196
>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats.
Identities = 64/182 (35%), Positives = 101/182 (55%), Gaps = 21/182 (11%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
++V T+++ Y+ G ++ A F+ MPE+D V W+ MI GY ++AL LF +M
Sbjct: 248 RNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQM 307
Query: 74 QTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDV 112
Q+ N++ D +T V +L+ F ++ +G ALIDMY KCG V
Sbjct: 308 QSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSV 367
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+A +F M +KD+ W AM+VGL+++GH +FS + + IR DE T++G+L C
Sbjct: 368 TQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGC 427
Query: 173 TH 174
TH
Sbjct: 428 TH 429
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 61/181 (33%), Positives = 97/181 (53%), Gaps = 21/181 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ DV T+++S Y+ D A + F +P+++ V WTA+I GY+ FREA+ F++
Sbjct: 146 DHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKK 205
Query: 73 MQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGD 111
+ ++ D F+ V++L ++FV +L+DMY KCG+
Sbjct: 206 LLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGN 265
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+E+A +F M KD +W+ MI G A +G ALD+F QM +++ D T VGVLSA
Sbjct: 266 LERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSA 325
Query: 172 C 172
C
Sbjct: 326 C 326
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 21/164 (12%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G + ++ F+Q+ E + LW MI G + + F +A+ L+ M+ + FT +L
Sbjct: 62 GSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVL 121
Query: 90 TT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
+++D+FV +L+ +Y KC + + A +VF + K+
Sbjct: 122 KACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVV 181
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+WTA+I G SGH A+ F ++L ++ D + V VL+AC
Sbjct: 182 SWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAAC 225
Score = 41.6 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 27/165 (16%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T ++ Y G V A + F M ++D V+W AM+ G + +LF ++ IR
Sbjct: 355 TALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIR 414
Query: 80 RDEFTTVRILTTFNNDIFVGIA----------------------LIDMYCKCGDVEKAQR 117
DE T + +L + FV ++D+ + G + +A +
Sbjct: 415 PDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQ 474
Query: 118 VFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
+ M ++ + W A++ G + H DT L Q+L+ I L+
Sbjct: 475 LINNMPMKPNAVVWGALLGGCKL--HKDTHLA--EQVLKKLIELE 515
>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like, partial [Brachypodium distachyon]
Length = 745
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 99/176 (56%), Gaps = 21/176 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T +V Y G++D AR+ F +M RD V W+AMI GY + +R REAL +F EMQ + +
Sbjct: 311 TALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVN 370
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
++ T V +L+ + +G AL+D Y KCG ++ A +
Sbjct: 371 PNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKA 430
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
F M ++ +TWTA+I G+A +G AL++FS ML A+I +VT++GVL AC+H
Sbjct: 431 FESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSH 486
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 21/174 (12%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
+++ Y + G V A F + + + W AMI GY++ ++E + +F+ M
Sbjct: 211 SLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPF 270
Query: 81 DEFTTVRILTTFN--NDIFVG-------------------IALIDMYCKCGDVEKAQRVF 119
DE T + + T D +G AL+DMY KCG+++KA+R+F
Sbjct: 271 DEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLF 330
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+M +D W+AMI G S AL +F++M + ++VT V VLSAC
Sbjct: 331 DRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACA 384
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 62/156 (39%), Gaps = 22/156 (14%)
Query: 39 FAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-QTSNIRRDEFTTVRILTT------ 91
P R + +I +LR +AL LF EM + + D+ T + +
Sbjct: 127 LGPHPPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCD 186
Query: 92 ---------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVG 136
F D FV +LI MY CGDV A +F + K W AMI G
Sbjct: 187 LSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAG 246
Query: 137 LAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+G ++MF ML DEVT + V +AC
Sbjct: 247 YVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATAC 282
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 68/164 (41%), Gaps = 24/164 (14%)
Query: 16 VISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 75
VI T +V Y G + A + F MP R+ WTA+I G R REAL LF M
Sbjct: 408 VILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLE 467
Query: 76 SNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGD-VEKAQRVFWKMLRKDKFT----- 129
+NI + T F+G+ L C G VE+ +R F M +
Sbjct: 468 ANIEPTDVT------------FIGVLLA---CSHGCLVEEGRRHFTSMTQDYGICPRIEH 512
Query: 130 WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+ M+ L +G D A M I + V + +LSACT
Sbjct: 513 YGCMVDLLGRAGLIDEAYQFIRNM---PIEPNAVVWRALLSACT 553
>gi|255579341|ref|XP_002530515.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529919|gb|EEF31847.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 359
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 112/193 (58%), Gaps = 22/193 (11%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A ++F M ++V+S+T ++ GY G + AR F + P+RD + W+A+I GY + +
Sbjct: 127 LARKVFDEMPERNVVSFTVMIDGYAKAGDMTTARDLFERAPKRDVIAWSALISGYAQNGQ 186
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTFN-----------------NDIFVG-----I 100
EA+ +F EM++ N++ DE+ V +++ + + I +G
Sbjct: 187 PNEAVRIFLEMESKNVKPDEYIMVSLMSACSQLGSLDLARWADCYLSKSSIDIGQTHVIA 246
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
ALIDM KCG++E+A+++F +M ++D T+ +MI GL+I G + A+ +F++ML S+
Sbjct: 247 ALIDMNAKCGNMERAKKLFEEMPKRDLITYCSMIQGLSIHGCAEQAVGLFNRMLNESLIP 306
Query: 161 DEVTYVGVLSACT 173
DE + VL+AC+
Sbjct: 307 DEAAFTVVLTACS 319
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 91/171 (53%), Gaps = 18/171 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M K+V+SWT +V GY+N G + A + F QMPER+ W AMIDG+++
Sbjct: 66 ARKMFDEMTQKNVVSWTAMVVGYLNVGDLGNAERLFDQMPERNLKSWNAMIDGWVKAGDL 125
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
A +F EM N+ FT +ID Y K GD+ A+ +F +
Sbjct: 126 LLARKVFDEMPERNVV--SFTV----------------MIDGYAKAGDMTTARDLFERAP 167
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
++D W+A+I G A +G + A+ +F +M +++ DE V ++SAC+
Sbjct: 168 KRDVIAWSALISGYAQNGQPNEAVRIFLEMESKNVKPDEYIMVSLMSACSQ 218
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 43/67 (64%)
Query: 93 NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
++D++VG +L+D Y KC ++ A+++F +M +K+ +WTAM+VG G A +F Q
Sbjct: 44 SDDVYVGSSLVDFYGKCKEILSARKMFDEMTQKNVVSWTAMVVGYLNVGDLGNAERLFDQ 103
Query: 153 MLRASIR 159
M +++
Sbjct: 104 MPERNLK 110
>gi|357154306|ref|XP_003576739.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
mitochondrial-like [Brachypodium distachyon]
Length = 620
Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats.
Identities = 67/192 (34%), Positives = 105/192 (54%), Gaps = 22/192 (11%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE 65
EIF +M+++ ++SW +++ Y+ G ++ A F P + + WTAMI G+ R E
Sbjct: 256 EIFESMESRTIVSWNSLIDAYMRLGHIEQAAVLFRIAPATNAISWTAMIGGFARNGSADE 315
Query: 66 ALTLFREMQTSN-IRRDEFTTVRIL---------------------TTFNNDIFVGIALI 103
AL LF +M T + I D FT +L T + + ++V +L+
Sbjct: 316 ALALFVKMLTQDDIHPDSFTFGAVLHACATASSLASGRMIHGCAFRTGYASYLYVANSLM 375
Query: 104 DMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEV 163
DMY KCGDVE A VF +L+KD +W M+ G AI+G AL+++ +ML DEV
Sbjct: 376 DMYAKCGDVEGATNVFHAVLKKDLVSWNTMLFGFAINGWAKEALEVYRRMLSHDACPDEV 435
Query: 164 TYVGVLSACTHN 175
T+ G+L+AC+H+
Sbjct: 436 TFAGLLTACSHS 447
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 33/195 (16%)
Query: 11 MKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 70
M ++ +SW +++ Y+ GQ+ +A++ F +MP + V W ++ GY R ++ L +F
Sbjct: 149 MPERNALSWCSLLHAYVASGQMKVAQELFDEMPIGNNVAWNTLLMGYSRSGNAKQCLLVF 208
Query: 71 REMQTSNIRRDEFT---------------------TVRILTTFNN--DIFVGI------- 100
+M+ S + D+ T + + + +N +IF +
Sbjct: 209 NKMRMSGLCCDDATLCILVDACAELPYPPTGFAIHKIVVQSGWNAIPEIFESMESRTIVS 268
Query: 101 --ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML-RAS 157
+LID Y + G +E+A +F + +WTAMI G A +G D AL +F +ML +
Sbjct: 269 WNSLIDAYMRLGHIEQAAVLFRIAPATNAISWTAMIGGFARNGSADEALALFVKMLTQDD 328
Query: 158 IRLDEVTYVGVLSAC 172
I D T+ VL AC
Sbjct: 329 IHPDSFTFGAVLHAC 343
Score = 40.0 bits (92), Expect = 0.34, Method: Composition-based stats.
Identities = 41/182 (22%), Positives = 68/182 (37%), Gaps = 48/182 (26%)
Query: 39 FAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT-------------SNIRRDEFTT 85
F MP RD V W AM+ Y R + R AL LF +++R +
Sbjct: 49 FDAMPCRDAVAWNAMLTAYARAGQPRAALGLFVRAHAPDAFSLTAALSAAADLRSPDAGA 108
Query: 86 ---VRILTT-FNNDIFVGIALIDM-------------------------------YCKCG 110
R+L + VG AL+ M Y G
Sbjct: 109 QLHARLLRLGLRAPLPVGNALVAMYARCARADDAARAFREMPERNALSWCSLLHAYVASG 168
Query: 111 DVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLS 170
++ AQ +F +M + W +++G + SG+ L +F++M + + D+ T ++
Sbjct: 169 QMKVAQELFDEMPIGNNVAWNTLLMGYSRSGNAKQCLLVFNKMRMSGLCCDDATLCILVD 228
Query: 171 AC 172
AC
Sbjct: 229 AC 230
>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 99/176 (56%), Gaps = 21/176 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T +V+ Y V ARQ F ++P+R+ V W A+I GY FR+ + +FREMQ + +
Sbjct: 181 TALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAK 240
Query: 80 RDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVEKAQRV 118
E T V +L + ++FVG ALIDMY KCG V++A+++
Sbjct: 241 PVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKI 300
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
F M K+ +TW +I G A++G G++AL FS+M+ + DEVT++GVL AC H
Sbjct: 301 FKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACCH 356
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 21/150 (14%)
Query: 46 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT-------------- 91
D L +MI Y N+ ++ ++ +M + I D T +L +
Sbjct: 106 DSDLCNSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIH 165
Query: 92 -------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGD 144
F ++++V AL++MY C V A++VF ++ ++ +W A+I G +
Sbjct: 166 CCIIQMGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFR 225
Query: 145 TALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+D+F +M A + EVT VGVL AC H
Sbjct: 226 KVIDVFREMQIAGAKPVEVTMVGVLLACAH 255
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 61/163 (37%), Gaps = 22/163 (13%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
+V T ++ Y G VD A + F M ++ W +I GY R AL F M
Sbjct: 277 NVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMI 336
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM-----LRKDKFT 129
+ DE T + +L C G V + + F M LR
Sbjct: 337 MEKFKPDEVTFLGVLCAC--------------CHQGLVNEGRTYFTSMKEEFGLRPRIEH 382
Query: 130 WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+ M+ L +G D A + M S++ D + + +L AC
Sbjct: 383 YGCMVDLLGRAGFLDEAQQLIQAM---SMQPDPIIWRELLGAC 422
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 68/153 (44%), Gaps = 20/153 (13%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP----ERDYVLWTAMIDGYLR 59
A +IF M+ K+V +W ++SGY G+ + A Q F++M + D V + ++
Sbjct: 297 AEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACCH 356
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119
E T F M ++EF + + ++D+ + G +++AQ++
Sbjct: 357 QGLVNEGRTYFTSM------KEEFGLRPRIEHYG-------CMVDLLGRAGFLDEAQQLI 403
Query: 120 WKM-LRKDKFTWTAMIVGLAISGHGDTALDMFS 151
M ++ D W ++ I HG+ L F+
Sbjct: 404 QAMSMQPDPIIWRELLGACRI--HGNIQLGEFA 434
>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
mitochondrial-like [Vitis vinifera]
Length = 632
Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 104/198 (52%), Gaps = 24/198 (12%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
MG A +F MK + V+SWT I+ G I V R F +MPER+ V WT MI GYL
Sbjct: 169 MGEARRVFYEMKGQSVVSWTVILDGVIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDS 228
Query: 61 NRFREALTLFREM---------------------QTSNIRRDEFTTVRILTTFNND--IF 97
+E+ L REM Q+ ++ + L T + I
Sbjct: 229 GLTQESFALVREMIFDLEMELNYVTLCSILTACSQSGDLMMGRWVHAYALKTKEKELNIM 288
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
VG A++DMY KCG + A + F KM +++ +W AM+ GLA+ G G ALD+F QM + +
Sbjct: 289 VGTAMVDMYAKCGRIHIAFKFFKKMPQRNVVSWNAMLSGLAMHGLGRAALDIFPQMFKEA 348
Query: 158 IRLDEVTYVGVLSACTHN 175
+ D+VT+ VLSAC+H+
Sbjct: 349 -KPDDVTFTSVLSACSHS 365
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 23/126 (18%)
Query: 35 ARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTF 92
AR+ F ++P +D V WT ++ ++R N EAL +F EM+ ++ DE T V +
Sbjct: 69 ARKVFDEIPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGC 128
Query: 93 N--NDIFVGI-------------------ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWT 131
D+ VG A++DMY K G + +A+RVF++M + +WT
Sbjct: 129 ARLGDVVVGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWT 188
Query: 132 AMIVGL 137
++ G+
Sbjct: 189 VILDGV 194
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLR--KDKFTWTAMIVGLAISGHGDTALDMFSQ 152
+ F+ AL+ Y CG +A++VF ++ KD WT ++ D AL +F +
Sbjct: 49 ETFLHNALLQFYASCGCAWQARKVFDEIPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVE 108
Query: 153 MLRASIRLDEVTYVGVLSACT 173
M R ++ DEVT V + C
Sbjct: 109 MRRCGVKPDEVTLVCLFGGCA 129
>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 762
Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats.
Identities = 64/192 (33%), Positives = 104/192 (54%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M ++++SW ++++G++ G V+ A F++MP RD V W +M+ Y + +
Sbjct: 311 AKRLFDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKP 370
Query: 64 REALTLFREMQTSNIRRDEFTTVRILT---------------TFNND------IFVGIAL 102
EAL LF +M+ ++ E T V +L+ T+ ND VG AL
Sbjct: 371 NEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTAL 430
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY KCG + A +VF M KD W +I G+AI G+ A +F +M A + ++
Sbjct: 431 VDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPND 490
Query: 163 VTYVGVLSACTH 174
+T+V +LSAC+H
Sbjct: 491 ITFVAILSACSH 502
Score = 99.4 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 18/174 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A ++F +DV+SW ++ GY+ ++ AR F +M RD + W MI+GY V
Sbjct: 246 LGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAIV 305
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
+ EA LF EM N L ++N +++ + KCG+VE A +F
Sbjct: 306 GKIDEAKRLFDEMPERN-----------LVSWN-------SMLAGFVKCGNVEDAFGLFS 347
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+M +D +W +M+ A G + AL +F QM ++ E T V +LSAC H
Sbjct: 348 EMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAH 401
Score = 42.4 bits (98), Expect = 0.081, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE 44
+ A ++F M++KDV++W TI++G G V A+Q F +M E
Sbjct: 440 ISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKE 483
>gi|242066664|ref|XP_002454621.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
gi|241934452|gb|EES07597.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
Length = 496
Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 104/193 (53%), Gaps = 21/193 (10%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
AL++F M + V+++ T+VSG + G VD A + F MP D V WTA+IDG+++ R
Sbjct: 125 LALQLFDTMPVRSVVTYNTMVSGLMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGR 184
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIA 101
EA+ FR M ++ D T + +++ ++ V +
Sbjct: 185 HDEAIDCFRAMLLDSVEPDYVTLIAVVSACAEVGALGLGMWVHRLVLRQGLERNVRVANS 244
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMY +CG V+ A +VF + ++ +W +MIVGLA +G A+++F +M R + D
Sbjct: 245 LIDMYARCGQVKLAAQVFHSIRKRTVVSWNSMIVGLAANGLCTEAIELFEEMRRQGFKPD 304
Query: 162 EVTYVGVLSACTH 174
VT GVL+AC+H
Sbjct: 305 AVTLTGVLTACSH 317
>gi|359493517|ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Vitis vinifera]
Length = 573
Score = 125 bits (313), Expect = 7e-27, Method: Composition-based stats.
Identities = 71/198 (35%), Positives = 107/198 (54%), Gaps = 30/198 (15%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M ++V+SWT ++SGY GQ+ A F +MPERD W A+I GY + F EA
Sbjct: 213 LFDEMTERNVVSWTAMISGYTRLGQIGNAVLLFEEMPERDVPSWNALIAGYTQNGLFMEA 272
Query: 67 LTLFREMQTSNI-------RRDEFTTVRILTT-----------------FNN----DIFV 98
L+LFR M R ++ T V L+ + N D FV
Sbjct: 273 LSLFRRMIAVEAGAWGQGNRPNQVTAVCSLSACGHTGMLRLGKWIHGYVYRNGLGLDSFV 332
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR--A 156
AL+DMY KCG +++A+RVF + L + +W +MI LA+ G A+ +F +M+ +
Sbjct: 333 SNALVDMYGKCGCLKEARRVFDRTLERSLTSWNSMINCLALHGQSQNAISVFEEMMTCGS 392
Query: 157 SIRLDEVTYVGVLSACTH 174
++ DEVT++G+L+ACTH
Sbjct: 393 GVKPDEVTFIGLLNACTH 410
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 66/156 (42%), Gaps = 43/156 (27%)
Query: 20 TTIVSGYIN-RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 78
T ++ Y+ V+ AR F +M ER+ V WTAMI GY R+ + A+ LF EM
Sbjct: 194 TALLDAYLRFWSDVESARLLFDEMTERNVVSWTAMISGYTRLGQIGNAVLLFEEMPE--- 250
Query: 79 RRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLA 138
R + ++N ALI Y + G +A +F +M+ + W
Sbjct: 251 --------RDVPSWN-------ALIAGYTQNGLFMEALSLFRRMIAVEAGAW-------- 287
Query: 139 ISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
G G+ R ++VT V LSAC H
Sbjct: 288 --GQGN--------------RPNQVTAVCSLSACGH 307
>gi|356547111|ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Glycine max]
Length = 521
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 103/188 (54%), Gaps = 21/188 (11%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 67
F M ++++SW T++ GY+ G+ + A Q F +P ++ + WTA+I G+++ + EAL
Sbjct: 153 FDQMGVRNLVSWNTMIDGYMRNGKFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEAL 212
Query: 68 TLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMY 106
FREMQ S + D T + ++ F N++ V +LIDMY
Sbjct: 213 ECFREMQLSGVAPDYVTVIAVIAACANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMY 272
Query: 107 CKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYV 166
+CG ++ A++VF +M ++ +W ++IVG A++G D AL F+ M + D V+Y
Sbjct: 273 SRCGCIDLARQVFDRMPQRTLVSWNSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSYT 332
Query: 167 GVLSACTH 174
G L AC+H
Sbjct: 333 GALMACSH 340
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 80/193 (41%), Gaps = 37/193 (19%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
N ++SWTT ++ Y G + A F QM E A+ ++ A +
Sbjct: 53 NDPIVSWTTSIADYCKSGHLVKAASKFVQMRE------AAIEPNHITFITLLSACAHYPS 106
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM---------- 122
+ + VR L ND+ VG ALIDMY KCG VE A+ F +M
Sbjct: 107 RSSISFGTAIHAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNT 166
Query: 123 -----LRKDKF----------------TWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
+R KF +WTA+I G + + AL+ F +M + + D
Sbjct: 167 MIDGYMRNGKFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPD 226
Query: 162 EVTYVGVLSACTH 174
VT + V++AC +
Sbjct: 227 YVTVIAVIAACAN 239
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 17/127 (13%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYL 58
A ++F M + ++SW +I+ G+ G D A YF M E D V +T +
Sbjct: 280 LARQVFDRMPQRTLVSWNSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSYTGALMACS 339
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
E L +F M+ +R RIL + G L+D+Y + G +E+A V
Sbjct: 340 HAGLIGEGLRIFEHMK--RVR-------RILPRIEH---YG-CLVDLYSRAGRLEEALNV 386
Query: 119 FWKMLRK 125
M K
Sbjct: 387 LKNMPMK 393
>gi|356577724|ref|XP_003556973.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Glycine max]
Length = 549
Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats.
Identities = 72/196 (36%), Positives = 103/196 (52%), Gaps = 25/196 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVN 61
A ++F K W +++GY G + AR F MPE RD V WT +I GY + +
Sbjct: 181 ARKLFDGATFKHAPLWNAMLAGYAKVGNMSNARNLFECMPEKDRDVVSWTTLISGYTQTH 240
Query: 62 RFREALTLFREMQTSNIRRDEFTTVRILTT-------------------FNNDIFVGI-- 100
EA+TLFR M N++ DE + +L+ NN + +
Sbjct: 241 SPNEAITLFRIMLLQNVQPDEIAILAVLSACADLGALQLGEWIHNYIEKHNNKLRKTVPL 300
Query: 101 --ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
+LIDMY K GD+ KA+++F M K TWT +I GLA+ G G ALD+FS M +A +
Sbjct: 301 CNSLIDMYAKSGDISKARQLFQNMKHKTIITWTTVISGLALHGFGKEALDVFSCMEKARV 360
Query: 159 RLDEVTYVGVLSACTH 174
+ +EVT + VLSAC+H
Sbjct: 361 KPNEVTLIAVLSACSH 376
>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 98/181 (54%), Gaps = 21/181 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV + T +V Y + A Q F +MPER+ V W A+I GY +F +A+ FR M
Sbjct: 123 DVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGML 182
Query: 75 TSNIRRDEFTTVRILTT------FNN---------------DIFVGIALIDMYCKCGDVE 113
+ E T V +L+ FN ++FVG ALIDMY KCG V
Sbjct: 183 ADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVY 242
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+ ++VF ++ K+ +TW +I G A++G GD AL FS+ML + + DEVT++GVL AC
Sbjct: 243 EVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACC 302
Query: 174 H 174
H
Sbjct: 303 H 303
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 65/167 (38%), Gaps = 25/167 (14%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
I+ N +V T ++ Y G V + F ++ E++ W +I GY + A
Sbjct: 216 IYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAA 275
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNNDIFV--------------GI--------ALID 104
L F M N + DE T + +L + V G+ ++D
Sbjct: 276 LQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVD 335
Query: 105 MYCKCGDVEKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMF 150
+ + G +E+A + M + D W A++ + HG+T L +
Sbjct: 336 LLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRV--HGNTKLGEY 380
>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 98/181 (54%), Gaps = 21/181 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV + T +V Y + A Q F +MPER+ V W A+I GY +F +A+ FR M
Sbjct: 123 DVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGML 182
Query: 75 TSNIRRDEFTTVRILTT------FNN---------------DIFVGIALIDMYCKCGDVE 113
+ E T V +L+ FN ++FVG ALIDMY KCG V
Sbjct: 183 ADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVY 242
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+ ++VF ++ K+ +TW +I G A++G GD AL FS+ML + + DEVT++GVL AC
Sbjct: 243 EVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACC 302
Query: 174 H 174
H
Sbjct: 303 H 303
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 65/167 (38%), Gaps = 25/167 (14%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
I+ N +V T ++ Y G V + F ++ E++ W +I GY + A
Sbjct: 216 IYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAA 275
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNNDIFV--------------GI--------ALID 104
L F M N + DE T + +L + V G+ ++D
Sbjct: 276 LQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVD 335
Query: 105 MYCKCGDVEKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMF 150
+ + G +E+A + M + D W A++ + HG+T L +
Sbjct: 336 LLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRV--HGNTKLGEY 380
>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 109/195 (55%), Gaps = 26/195 (13%)
Query: 2 GFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVN 61
GF E+ N++N V + G G ++ AR+ F +M + D V W+AMI GY+RV
Sbjct: 40 GFGDEV--NVQNTLVHMYCCCRGG---EGGIEFARKVFDEMYKSDSVSWSAMIGGYVRVG 94
Query: 62 RFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGI 100
R +A+ LFREMQ + DE T V +L+ ++ +
Sbjct: 95 RSSDAINLFREMQIKGVCPDEITMVSVLSACTGLGALELGKWVESYVEKERVQKNVELSN 154
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
ALIDM+ KCGDV+KA +F M ++ +WT++I GLA+ G G A+ +F +M+R+ +
Sbjct: 155 ALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTP 214
Query: 161 DEVTYVGVLSACTHN 175
D+V ++G+LSAC+H+
Sbjct: 215 DDVVFIGLLSACSHS 229
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 75/179 (41%), Gaps = 30/179 (16%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
K+V ++ + G VD A F M ER+ V WT++I G R EA+ +F EM
Sbjct: 148 KNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGLAMHGRGVEAVAVFEEM 207
Query: 74 QTSNIRRDEFTTVRILTTFNNDIFVGIA----------------------LIDMYCKCGD 111
S + D+ + +L+ ++ V ++DM C+ G
Sbjct: 208 VRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSIVPKIEHYGCMVDMLCRAGL 267
Query: 112 VEKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR---LDEVTYV 166
V++A + +M + + W +I A HG+ L + ++ R IR + E YV
Sbjct: 268 VKEALKFVQEMPIDPNPVVWRTLIN--ACRAHGE--LKLGEKITRQLIRNEPMHESNYV 322
>gi|125548143|gb|EAY93965.1| hypothetical protein OsI_15743 [Oryza sativa Indica Group]
gi|125590256|gb|EAZ30606.1| hypothetical protein OsJ_14659 [Oryza sativa Japonica Group]
Length = 328
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 95/185 (51%), Gaps = 21/185 (11%)
Query: 11 MKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 70
M+ DV+S +V GY+ G++ +A + F MPERD V W ++ G + R +A+ LF
Sbjct: 1 MRAPDVVSHNALVHGYVKAGRLGLAVRVFEGMPERDAVSWGTVVAGCAKAGRLEKAVRLF 60
Query: 71 REMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIALIDMYCKC 109
M+ R D+ +L T ++++ ++D+Y KC
Sbjct: 61 DRMRREGYRPDDVALAAVLSCCAQLGALDKGQEVHEYVRRTRPRPNVYLCTGIVDLYAKC 120
Query: 110 GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVL 169
G VE A+ VF K+ FTW A+IVGLA+ GHG ALD F +ML R D T++GVL
Sbjct: 121 GRVEVAREVFDACPEKNVFTWNALIVGLAMHGHGTVALDYFDRMLVEGFRPDGTTFLGVL 180
Query: 170 SACTH 174
C+H
Sbjct: 181 IGCSH 185
>gi|225457861|ref|XP_002279169.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g77010, mitochondrial-like [Vitis vinifera]
Length = 685
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 106/192 (55%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F +++ D I ++++ Y N G++D ARQ F MP + + W +MI G+ +
Sbjct: 359 ACKLFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACP 418
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
EAL LF EM +R D+F+ +++ + D + +L
Sbjct: 419 IEALDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSL 478
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+D YCKCG VE +++F +M++ D+ W +M++G A +GHG AL++F QM ++ +
Sbjct: 479 VDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTD 538
Query: 163 VTYVGVLSACTH 174
+T+VGVLSAC H
Sbjct: 539 ITFVGVLSACDH 550
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 106/227 (46%), Gaps = 55/227 (24%)
Query: 2 GFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVN 61
G +LE+F +M +KD SW ++SG+ G +++AR+ F +MP ++ + W +MI GY
Sbjct: 90 GKSLELFDSMPHKDAFSWNVVISGFAKEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNG 149
Query: 62 RFREALTLFREMQTSNIRR---DEFTTVRILTTFNN---------------------DIF 97
R +EA+ LF+++ + + R D F ++ N D
Sbjct: 150 RPKEAVGLFKDLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQIHARIVVDEVEFDSV 209
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLA------------------- 138
+G +L+++Y KCGD++ A V M D F+ +A+I G A
Sbjct: 210 LGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNAC 269
Query: 139 -------ISGH-----GDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
ISG+ AL++F+ M R ++ D T+ VLSAC+
Sbjct: 270 VVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACS 316
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 97/222 (43%), Gaps = 52/222 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A + MK D S + ++SGY + G+++ AR+ F VLW +MI GY+ N
Sbjct: 227 ANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEA 286
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
EAL LF M+ ++ D T +L+ F NDI + AL
Sbjct: 287 LEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSAL 346
Query: 103 IDMYCK-------------------------------CGDVEKAQRVFWKMLRKDKFTWT 131
+DMY K CG ++ A+++F M K +W
Sbjct: 347 VDMYSKCRRPDDACKLFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWN 406
Query: 132 AMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+MIVG + + ALD+F +M + +R+D+ + GV+SAC
Sbjct: 407 SMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVISACA 448
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 18/97 (18%)
Query: 57 YLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQ 116
Y R N REA LF EM N F +I+ Y K G K+
Sbjct: 52 YSRCNSMREAQQLFEEMPKRNC------------------FSWNTMIEGYLKSGSKGKSL 93
Query: 117 RVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+F M KD F+W +I G A G+ + A +F++M
Sbjct: 94 ELFDSMPHKDAFSWNVVISGFAKEGNLEVARRLFNEM 130
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 68 TLFREMQTSN----IRRDEFTTVRILTT--FNNDIFVGIALIDMYCKCGDVEKAQRVFWK 121
+L R++ + N I R + L + ++ + +G L+ MY +C + +AQ++F +
Sbjct: 8 SLARQLGSCNNYGSIYRGRLLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQLFEE 67
Query: 122 MLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
M +++ F+W MI G SG +L++F M
Sbjct: 68 MPKRNCFSWNTMIEGYLKSGSKGKSLELFDSM 99
>gi|326489701|dbj|BAK01831.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 484
Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 101/193 (52%), Gaps = 21/193 (10%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
AL++FG+M + ++++ T+++G + G V AR+ F MPE D V WTA+IDG ++ R
Sbjct: 124 LALQLFGSMTVRSLVTYNTMITGLMRNGLVAAAREVFDGMPEPDKVSWTALIDGCVKNGR 183
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIA 101
EA+ F M + D T V ++ +I + +
Sbjct: 184 HDEAIDCFHAMLLDGVEPDYVTLVAAISACAEVGALGLGMWVHRLVTRERLEGNIRIANS 243
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMY +CG VE A++VF M + +W +MIVG A +G A++ F M R R D
Sbjct: 244 LIDMYARCGQVEFARQVFDSMRNRTVVSWNSMIVGFAANGRCTDAIEHFEAMRRKGFRPD 303
Query: 162 EVTYVGVLSACTH 174
VT+ GVL+AC+H
Sbjct: 304 AVTFTGVLTACSH 316
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYL 58
FA ++F +M+N+ V+SW +++ G+ G+ A ++F M + D V +T ++
Sbjct: 256 FARQVFDSMRNRTVVSWNSMIVGFAANGRCTDAIEHFEAMRRKGFRPDAVTFTGVLTACS 315
Query: 59 RVNRFREALTLFREMQTSN---IRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKA 115
E L ++ M+ + R + + V +D+ + G + +A
Sbjct: 316 HAGLTDEGLRYYKAMRAEHGITARMEHYGCV----------------VDLLGRAGRLGEA 359
Query: 116 QRVFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
V M +R ++ A++ G + HGD +DM Q+++ + D
Sbjct: 360 MSVVATMPMRPNEVVLGALLAGCRM--HGD--VDMAEQLMQHLLEQDP 403
>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
Length = 687
Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats.
Identities = 67/193 (34%), Positives = 100/193 (51%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F M ++V+SW+T+VS Y +G +++AR F +MP ++ V WT M+ +
Sbjct: 317 AFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLV 376
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
EA LF EM + I D V IL + V AL
Sbjct: 377 EEAGRLFTEMMDAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNAL 436
Query: 103 IDMYCKCGDVEKAQRVF-WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
+DM+CKCG V +A +F +++ KD +W +I G A+ G G+ AL++F+QM + D
Sbjct: 437 MDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPD 496
Query: 162 EVTYVGVLSACTH 174
VT + VLSACTH
Sbjct: 497 AVTLINVLSACTH 509
Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats.
Identities = 59/172 (34%), Positives = 93/172 (54%), Gaps = 18/172 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +DV+SW T ++ + +G+VD AR F +MPE+D V W M+DGY +
Sbjct: 255 AKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEA 314
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+A LF+ M N+ ++TV + YCK GD+E A+ +F KM
Sbjct: 315 EKAFELFQRMPGRNVV--SWSTV----------------VSAYCKKGDMEMARVIFDKMP 356
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
K+ TWT M+ A G + A +F++M+ A+I LD + V +L+AC +
Sbjct: 357 AKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAES 408
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
D FVG ALID Y K + A++VF +M +D +W + + G D A MF +M
Sbjct: 235 DTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEM 293
>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
gi|194696634|gb|ACF82401.1| unknown [Zea mays]
Length = 615
Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats.
Identities = 67/193 (34%), Positives = 100/193 (51%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F M ++V+SW+T+VS Y +G +++AR F +MP ++ V WT M+ +
Sbjct: 245 AFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLV 304
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
EA LF EM + I D V IL + V AL
Sbjct: 305 EEAGRLFTEMMDAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNAL 364
Query: 103 IDMYCKCGDVEKAQRVF-WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
+DM+CKCG V +A +F +++ KD +W +I G A+ G G+ AL++F+QM + D
Sbjct: 365 MDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPD 424
Query: 162 EVTYVGVLSACTH 174
VT + VLSACTH
Sbjct: 425 AVTLINVLSACTH 437
Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats.
Identities = 59/172 (34%), Positives = 93/172 (54%), Gaps = 18/172 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +DV+SW T ++ + +G+VD AR F +MPE+D V W M+DGY +
Sbjct: 183 AKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEA 242
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+A LF+ M N+ ++TV + YCK GD+E A+ +F KM
Sbjct: 243 EKAFELFQRMPGRNVV--SWSTV----------------VSAYCKKGDMEMARVIFDKMP 284
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
K+ TWT M+ A G + A +F++M+ A+I LD + V +L+AC +
Sbjct: 285 AKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAES 336
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
D FVG ALID Y K + A++VF +M +D +W + + G D A MF +M
Sbjct: 163 DTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEM 221
>gi|222628408|gb|EEE60540.1| hypothetical protein OsJ_13880 [Oryza sativa Japonica Group]
Length = 594
Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats.
Identities = 68/195 (34%), Positives = 105/195 (53%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +++ + K+++ TT+V GY G+V+IA F MP +D V W+AMI GY
Sbjct: 221 MEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAES 280
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVG 99
++ EAL LF +MQ S ++ DE T + +++ N + +G
Sbjct: 281 SKPMEALNLFHDMQRSGVKPDEITMLSVISACANVGALEKARCIHSFVENHSMCKILPIG 340
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDM+ KCG + A VF M +K+ TWT++I A+ G G +AL +F M I+
Sbjct: 341 NALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQ 400
Query: 160 LDEVTYVGVLSACTH 174
+ VT++G+L AC H
Sbjct: 401 PNGVTFLGLLYACCH 415
Score = 95.1 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 60/207 (28%), Positives = 91/207 (43%), Gaps = 52/207 (25%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T +V Y G+V+ AR+ F MP+RD V W M+D Y + + EAL LF M+ S +
Sbjct: 108 TALVRAYAACGRVEDARRVFDGMPDRDLVAWGVMLDCYCQARNYEEALLLFHSMKRSRVV 167
Query: 80 RDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVEKAQR- 117
D+ +L+T + D V AL++MY C D+E A++
Sbjct: 168 PDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALMNMYASCADMEMAEKL 227
Query: 118 ------------------------------VFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
+F M KD +W+AMI G A S AL
Sbjct: 228 YNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPMEAL 287
Query: 148 DMFSQMLRASIRLDEVTYVGVLSACTH 174
++F M R+ ++ DE+T + V+SAC +
Sbjct: 288 NLFHDMQRSGVKPDEITMLSVISACAN 314
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 42/80 (52%)
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML 154
D FVG AL+ Y CG VE A+RVF M +D W M+ + + + AL +F M
Sbjct: 103 DGFVGTALVRAYAACGRVEDARRVFDGMPDRDLVAWGVMLDCYCQARNYEEALLLFHSMK 162
Query: 155 RASIRLDEVTYVGVLSACTH 174
R+ + D+V VLS C H
Sbjct: 163 RSRVVPDQVIIATVLSTCAH 182
>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 105/197 (53%), Gaps = 22/197 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +F M KD+ +WTTIVSGY G ++ A + F QMPE++ V W+A+I GY R
Sbjct: 246 MRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARN 305
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVG 99
+ EAL F +M I +++T L T F + V
Sbjct: 306 SLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVV 365
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRK-DKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
+LIDMY KCG +E + VF M K D W MI LA +GHG+ A+ MF+ M+ + +
Sbjct: 366 SSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGL 425
Query: 159 RLDEVTYVGVLSACTHN 175
+ D +T++ +LSAC+H+
Sbjct: 426 KPDRITFIVILSACSHS 442
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 98/222 (44%), Gaps = 52/222 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +++ SW +++GY G V+ AR+ F +M E+D V W ++ Y + F
Sbjct: 117 ARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCF 176
Query: 64 REALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIAL 102
EA+ L+R+ + ++ + F+ +L F +++ + ++
Sbjct: 177 NEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSI 236
Query: 103 IDMYCKC-------------------------------GDVEKAQRVFWKMLRKDKFTWT 131
+D Y KC GD+ A +F +M K+ +W+
Sbjct: 237 VDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWS 296
Query: 132 AMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
A+I G A + G ALD F++M++ I ++ T+ L AC
Sbjct: 297 ALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACA 338
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 28 NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV----NRFREALTLFREMQTSNIRRDEF 83
++G++ A Y ++ +R L T + LR+ F+ + ++ + +R
Sbjct: 39 SQGRLPEALSYLDRLAQRGIRLPTGIFVDLLRLCAKAKYFKGGKCVHLHLKHTGFKRP-- 96
Query: 84 TTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHG 143
TT+ V LI MY +CG +A++VF KM ++ ++W M+ G A G
Sbjct: 97 TTI-----------VANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDV 145
Query: 144 DTALDMFSQMLRASI 158
+ A +F +M+ +
Sbjct: 146 NNARKLFDRMMEKDV 160
>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 72/197 (36%), Positives = 105/197 (53%), Gaps = 22/197 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +F M KD+ +WTTIVSGY G ++ A + F QMPE++ V W+A+I GY R
Sbjct: 246 MRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARN 305
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVG 99
+ EAL F +M I +++T L T F + V
Sbjct: 306 SLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVV 365
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRK-DKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
+LIDMY KCG +E + VF M K D W MI LA +GHG+ A+ MF+ M+ + +
Sbjct: 366 SSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGL 425
Query: 159 RLDEVTYVGVLSACTHN 175
+ D +T++ +LSAC+H+
Sbjct: 426 KPDRITFIVILSACSHS 442
Score = 85.5 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 52/221 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +++ SW +++GY G V+ AR+ F +M E+D V W ++ Y + F
Sbjct: 117 ARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCF 176
Query: 64 REALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIAL 102
EA+ L+R+ + ++ + F+ +L F +++ + ++
Sbjct: 177 NEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSI 236
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLA------------------------ 138
+D Y KCG++ A+ +F +ML KD WT ++ G A
Sbjct: 237 VDAYAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWS 296
Query: 139 --ISGH-----GDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
ISG+ G ALD F++M++ I ++ T+ L AC
Sbjct: 297 ALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCAC 337
Score = 41.2 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
LI MY +CG +A++VF KM ++ ++W M+ G A G + A +F +M+ +
Sbjct: 104 LIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDV 160
>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Glycine max]
Length = 629
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 67/192 (34%), Positives = 107/192 (55%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +DV++ T ++ + G V+ A + F +M RD V WT +IDG +R F
Sbjct: 179 ARKMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEF 238
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
L +FREMQ + +E T V +L+ + FV AL
Sbjct: 239 NRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGRWIHAYMRKCGVEVNRFVAGAL 298
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I+MY +CGD+++AQ +F + KD T+ +MI GLA+ G A+++FS+ML+ +R +
Sbjct: 299 INMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIEAVELFSEMLKERVRPNG 358
Query: 163 VTYVGVLSACTH 174
+T+VGVL+AC+H
Sbjct: 359 ITFVGVLNACSH 370
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+++F +N +V +T+++ G+++ G A F QM + + + L+
Sbjct: 78 AIKLFRCTQNPNVYLYTSLIDGFVSFGSYTDAINLFCQMVRKHVLADNYAVTAMLKACVL 137
Query: 64 REALTLFREMQ----TSNIRRDEFTTVRILTTFNN-----------------DIFVGIAL 102
+ AL +E+ S + D ++++ + D+ +
Sbjct: 138 QRALGSGKEVHGLVLKSGLGLDRSIALKLVELYGKCGVLEDARKMFDGMPERDVVACTVM 197
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I CG VE+A VF +M +D WT +I GL +G + L++F +M + +E
Sbjct: 198 IGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNE 257
Query: 163 VTYVGVLSACTH 174
VT+V VLSAC
Sbjct: 258 VTFVCVLSACAQ 269
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 42/85 (49%)
Query: 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
I T + D FV L+ +YCK ++ A ++F + + +T++I G G A+
Sbjct: 51 IKTRTSQDPFVAFELLRVYCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSFGSYTDAI 110
Query: 148 DMFSQMLRASIRLDEVTYVGVLSAC 172
++F QM+R + D +L AC
Sbjct: 111 NLFCQMVRKHVLADNYAVTAMLKAC 135
>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Vitis vinifera]
Length = 610
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 63/190 (33%), Positives = 110/190 (57%), Gaps = 22/190 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F ++ +K+ ISWT ++SGY G+ A Q F +MP ++ + WTA+I G ++ + ++
Sbjct: 162 VFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDS 221
Query: 67 LTLFREMQTSNIR-RDEFT---------------------TVRILTTFNNDIFVGIALID 104
LF EM++ I D F + IL + + +FV AL+D
Sbjct: 222 FYLFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQIHCLVILLGYESSLFVSNALVD 281
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVT 164
MY KC DV A+++F +M+++D +WT++IVG A G + AL ++++ML ++ +EVT
Sbjct: 282 MYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVT 341
Query: 165 YVGVLSACTH 174
+VG++ AC+H
Sbjct: 342 FVGLIYACSH 351
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/154 (25%), Positives = 69/154 (44%), Gaps = 22/154 (14%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-QTSNIRR 80
+++ Y G + A F Q+P RD + W +++ + N L++F M + ++
Sbjct: 44 LINMYGKCGLIQDALNLFNQLPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQP 103
Query: 81 DEFT---------------------TVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119
D + I++ ++D V +L+DMY KCG + + VF
Sbjct: 104 DHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVF 163
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+ K+ +WTAMI G A SG A+ +F +M
Sbjct: 164 DSISSKNSISWTAMISGYAQSGRKLDAIQLFQKM 197
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 22/159 (13%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
+V Y V A++ F +M +RD V WT++I G + EAL+L+ M ++ ++ +
Sbjct: 279 LVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPN 338
Query: 82 EFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT-----WTAMIVG 136
E T FVG LI G V K + F M++ +T ++
Sbjct: 339 EVT------------FVG--LIYACSHVGLVSKGRYFFNSMIKDYGINPSLQHYTCLLDL 384
Query: 137 LAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
L+ SGH + A ++ M + DE T+ +LSAC H+
Sbjct: 385 LSRSGHLEEAENLIKAM---PFKPDEATWAALLSACNHH 420
>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 618
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 112/197 (56%), Gaps = 23/197 (11%)
Query: 1 MGFALEIFGNMKN--KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYL 58
MG ++ + KN ++I T ++ Y+ G VD R F M RD V W+AMI GY
Sbjct: 246 MGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAMIAGYA 305
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIF 97
+ R EAL LF M+++ I+ ++ T V +L+ ++++
Sbjct: 306 QNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVY 365
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
V AL+ MY KCG++ KA+++F K+ ++D TW +MI+GLAI+G + A+ ++++M
Sbjct: 366 VASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIE 425
Query: 158 IRLDEVTYVGVLSACTH 174
++ + +T+VG+++ACTH
Sbjct: 426 VKPNNITFVGLMTACTH 442
Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 98/195 (50%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A IF + KD I++ ++S Y G+V AR+ F +M +R V W AMI Y +
Sbjct: 147 LGSAELIFDGILVKDTIAYNCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQN 206
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILT---------------------TFNNDIFVG 99
+ + +F+ MQ +E T +L+ +++ V
Sbjct: 207 GDYHKGWIIFQRMQDEMCEPNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVS 266
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
A+++MY KCG V+ + VF M R+D TW+AMI G A +G + AL++F M A I+
Sbjct: 267 TAMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIK 326
Query: 160 LDEVTYVGVLSACTH 174
++VT V VLSAC
Sbjct: 327 PNDVTLVSVLSACAQ 341
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 21/153 (13%)
Query: 27 INRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTV 86
+N + ARQ F Q+P D + + I Y R++ EAL F M +N+R FT
Sbjct: 41 LNASFIQYARQVFDQIPHPDQGVHCSFITAYSRLSLNNEALRTFVSMHQNNVRIVCFTIP 100
Query: 87 RILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK 125
I + F++ +F ALI+ Y K D+ A+ +F +L K
Sbjct: 101 PIFKSCASLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGILVK 160
Query: 126 DKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
D + +I + SG A ++F +M SI
Sbjct: 161 DTIAYNCLISAYSRSGEVLAARELFDKMRDRSI 193
>gi|225432514|ref|XP_002277532.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial [Vitis vinifera]
Length = 694
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 67/190 (35%), Positives = 107/190 (56%), Gaps = 28/190 (14%)
Query: 11 MKNKD-VISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 69
+ +KD V SW ++SG++ G ++ ARQ F +MPERD W++MI GY + + AL L
Sbjct: 376 LGSKDHVSSWNALISGFVRNGMIEQARQLFDEMPERDVFSWSSMISGYSQNEQPDLALQL 435
Query: 70 FREMQTSNIRRDEFTTVRILTT-----------------FNNDI----FVGIALIDMYCK 108
F EM ++ +E T V + + +N I + ALIDMY K
Sbjct: 436 FHEMVAGGVQPNEITMVSVFSAIATLGTLMEGRWAHEYILSNSIPLNDNLNAALIDMYAK 495
Query: 109 CGDVEKAQRVFWKMLRKDKFT----WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVT 164
CG + A ++F+++ +D+ + W A+I GLA+ GH + +L +FSQ+ R I+ + +T
Sbjct: 496 CGSITIALQLFYEI--QDRVSSVSPWNAIICGLAMHGHANVSLKLFSQLQRVRIKPNSIT 553
Query: 165 YVGVLSACTH 174
++GVLSAC H
Sbjct: 554 FIGVLSACCH 563
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 57/223 (25%), Positives = 105/223 (47%), Gaps = 52/223 (23%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A +F + ++V++W +++GY G VD+AR F ++P +D V W +IDGY+++
Sbjct: 235 LGNARVLFDEIPERNVVTWNVMLNGYSKSGLVDLARDLFERIPAKDVVSWGTIIDGYVQI 294
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVG 99
R EAL ++R M + + +E V ++ T F+ F+
Sbjct: 295 ERLGEALRMYRSMLRTGVGPNEVMIVDLISACGRTMAVSEGQQFHGIIVRTGFDCYDFIQ 354
Query: 100 IALIDMYCKCGD-------------------------------VEKAQRVFWKMLRKDKF 128
+I Y CG+ +E+A+++F +M +D F
Sbjct: 355 ATIIHFYAACGEINLAFLQFELGSKDHVSSWNALISGFVRNGMIEQARQLFDEMPERDVF 414
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+W++MI G + + D AL +F +M+ ++ +E+T V V SA
Sbjct: 415 SWSSMISGYSQNEQPDLALQLFHEMVAGGVQPNEITMVSVFSA 457
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 51/221 (23%), Positives = 94/221 (42%), Gaps = 52/221 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F D +S +++GY+ G +D AR F +MP + V +T M+ G + N +
Sbjct: 106 ARSLFDTCSVLDPVSCNIMLAGYVKSGSLDNARHLFEKMPIKGCVSYTTMVMGLAQNNCW 165
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNND---------------------IFVGIAL 102
EA+ +F++M+ + + +E T +++ +++ V L
Sbjct: 166 LEAIGVFKDMRFAGVIPNEVTLASVISAYSHVGGILNCRMLHALSFKLGLEALNIVATNL 225
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ---------- 152
+ MYC C + A+ +F ++ ++ TW M+ G + SG D A D+F +
Sbjct: 226 VHMYCVCSSLGNARVLFDEIPERNVVTWNVMLNGYSKSGLVDLARDLFERIPAKDVVSWG 285
Query: 153 ---------------------MLRASIRLDEVTYVGVLSAC 172
MLR + +EV V ++SAC
Sbjct: 286 TIIDGYVQIERLGEALRMYRSMLRTGVGPNEVMIVDLISAC 326
Score = 42.7 bits (99), Expect = 0.051, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 80 RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAI 139
R F T +L + +I ++ Y K G ++ A+ +F KM K ++T M++GLA
Sbjct: 107 RSLFDTCSVLDPVSCNI-----MLAGYVKSGSLDNARHLFEKMPIKGCVSYTTMVMGLAQ 161
Query: 140 SGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+ A+ +F M A + +EVT V+SA +H
Sbjct: 162 NNCWLEAIGVFKDMRFAGVIPNEVTLASVISAYSH 196
>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
Length = 505
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 101/184 (54%), Gaps = 23/184 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDY--VLWTAMIDGYLRVNRFREALTLFRE 72
D+I T ++ Y G V+ AR F M ER+ V W MI Y++ F A+++F++
Sbjct: 64 DMILQTGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQ 123
Query: 73 MQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGD 111
MQ+ N++ E T V +L+ + D+ +G ALIDMYCKCG
Sbjct: 124 MQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGA 183
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+E A VF + RK+ F W ++IVGL ++G G+ A+ F M + I+ D VT+VG+LS
Sbjct: 184 LEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSG 243
Query: 172 CTHN 175
C+H+
Sbjct: 244 CSHS 247
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK--DKFTWTAMIVGLAISGHGDTALDM 149
F D+ + L+D Y K G VE+A+ +F M + + TW MI G TA+ M
Sbjct: 61 FEYDMILQTGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISM 120
Query: 150 FSQMLRASIRLDEVTYVGVLSACTH 174
F QM +++ EVT V +LSAC H
Sbjct: 121 FQQMQSENVKPTEVTMVSLLSACAH 145
>gi|255551991|ref|XP_002517040.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543675|gb|EEF45203.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 456
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 106/181 (58%), Gaps = 21/181 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV ++++ Y G D A + F +MP ++ V W+A+I GY++ NRF++AL LF++M
Sbjct: 231 DVYIGSSLLDMYCKCGYCDDACKLFNEMPVKNIVCWSALIAGYVQCNRFKDALLLFQDML 290
Query: 75 TSNIRRDEFTTVRILT---------------------TFNNDIFVGIALIDMYCKCGDVE 113
+++R ++ T +LT + + +G ALIDMY KCG +
Sbjct: 291 LTDVRPNQCTLSSVLTASAQLGALDRGRWVHDYIDRNSLEMNSILGTALIDMYAKCGCIS 350
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+A VF K+ K+ +TWTAMI GLA+ G ++L++FS M+ ++ + VT+VG+L+AC
Sbjct: 351 EAYVVFNKLHIKNVYTWTAMINGLAMHGDALSSLNLFSHMISNGVQPNGVTFVGILNACA 410
Query: 174 H 174
H
Sbjct: 411 H 411
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 22/173 (12%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
++++ + N G V A Q + P R+ V WTAMIDGY+R + + F++M++ ++
Sbjct: 135 SLITAFSNCGCVQFAHQVLDESPHRNLVTWTAMIDGYVRNGFPVDGIKCFKKMRSMGVKI 194
Query: 81 DEFTTVRILTTFNN----------------------DIFVGIALIDMYCKCGDVEKAQRV 118
DE T V +L D+++G +L+DMYCKCG + A ++
Sbjct: 195 DEITVVSVLCAAGMAGDVWFGRWVHGFYVESGRVKWDVYIGSSLLDMYCKCGYCDDACKL 254
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
F +M K+ W+A+I G AL +F ML +R ++ T VL+A
Sbjct: 255 FNEMPVKNIVCWSALIAGYVQCNRFKDALLLFQDMLLTDVRPNQCTLSSVLTA 307
>gi|255575758|ref|XP_002528778.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531781|gb|EEF33600.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 518
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 105/193 (54%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F NM ++DV+SW ++ GY V +AR F QMP R+ V W M+ YL+ +
Sbjct: 272 AKKLFDNMPSRDVVSWNCMIDGYAKIRNVSVARWLFNQMPFRNIVSWNIMLALYLKCKNY 331
Query: 64 REALTLF-REMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIA 101
E L LF R ++ +R ++ + + +LT N D + A
Sbjct: 332 GECLKLFDRMIEERELRPNKASLMSVLTACANFRRLDLGKWIHSYIKDNEVESDELLSTA 391
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+ MY KCG ++ A+ +F KM K +W +MI+G AI+GH + AL+ F +M ++S+ +
Sbjct: 392 LLTMYAKCGMMDFARHIFTKMPHKSVVSWNSMIMGYAINGHAEKALETFLEMEKSSMMPN 451
Query: 162 EVTYVGVLSACTH 174
T+V VLSAC+H
Sbjct: 452 AATFVSVLSACSH 464
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 21/162 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D++SW +++ GY+ G + +AR+ F +MPERD W +MI GY+ A LF M
Sbjct: 221 DLVSWNSMIIGYVKNGDIGLARELFDEMPERDAFSWNSMISGYVGAGDVEAAKKLFDNMP 280
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
+ R + ++N +ID Y K +V A+ +F +M ++ +W M+
Sbjct: 281 S-----------RDVVSWN-------CMIDGYAKIRNVSVARWLFNQMPFRNIVSWNIML 322
Query: 135 -VGLAISGHGDTALDMFSQMLRA-SIRLDEVTYVGVLSACTH 174
+ L +G+ L +F +M+ +R ++ + + VL+AC +
Sbjct: 323 ALYLKCKNYGE-CLKLFDRMIEERELRPNKASLMSVLTACAN 363
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 18/134 (13%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+++ Y G+V AR F D V W +MI GY++ A LF EM
Sbjct: 195 NSLLHMYSACGRVLDARLLFESGFVLDLVSWNSMIIGYVKNGDIGLARELFDEMP----E 250
Query: 80 RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAI 139
RD F ++N ++I Y GDVE A+++F M +D +W MI G A
Sbjct: 251 RDAF-------SWN-------SMISGYVGAGDVEAAKKLFDNMPSRDVVSWNCMIDGYAK 296
Query: 140 SGHGDTALDMFSQM 153
+ A +F+QM
Sbjct: 297 IRNVSVARWLFNQM 310
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQM 42
M FA IF M +K V+SW +++ GY G + A + F +M
Sbjct: 402 MDFARHIFTKMPHKSVVSWNSMIMGYAINGHAEKALETFLEM 443
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
F D +V +L+ MY CG V A+ +F D +W +MI+G +G A ++F
Sbjct: 187 FEFDAYVRNSLLHMYSACGRVLDARLLFESGFVLDLVSWNSMIIGYVKNGDIGLARELFD 246
Query: 152 QM 153
+M
Sbjct: 247 EM 248
>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 748
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 104/195 (53%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M AL +F M K+ +SW T++SGY GQ+D A + F M E++ V W ++I G+L+
Sbjct: 375 MDEALNLFRQMPIKNSVSWNTMISGYAQAGQMDRATEIFQAMREKNIVSWNSLIAGFLQN 434
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
N + +AL M + D+ T L+ + ND+FVG
Sbjct: 435 NLYLDALKSLVMMGKEGKKPDQSTFACTLSACANLAALQVGNQLHEYILKSGYMNDLFVG 494
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALI MY KCG V+ A++VF + D +W ++I G A++G+ + A F QM +
Sbjct: 495 NALIAMYAKCGRVQSAEQVFRDIECVDLISWNSLISGYALNGYANKAFKAFEQMSSERVV 554
Query: 160 LDEVTYVGVLSACTH 174
DEVT++G+LSAC+H
Sbjct: 555 PDEVTFIGMLSACSH 569
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 80/153 (52%), Gaps = 18/153 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A E+F M +K+V+SW +++ Y+ QVD A + F +MP +D V WT +I+GY+RV
Sbjct: 251 MAEARELFDRMPSKNVVSWNAMIATYVQDLQVDEAVKLFKKMPHKDSVSWTTIINGYIRV 310
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
+ EA ++ +M DI AL+ + G +++A ++F
Sbjct: 311 GKLDEARQVYNQMPCK------------------DITAQTALMSGLIQNGRIDEADQMFS 352
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
++ D W +MI G + SG D AL++F QM
Sbjct: 353 RIGAHDVVCWNSMIAGYSRSGRMDEALNLFRQM 385
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 88/202 (43%), Gaps = 49/202 (24%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP-------------------- 43
A+++F M +KD +SWTTI++GYI G++D ARQ + QMP
Sbjct: 285 AVKLFKKMPHKDSVSWTTIINGYIRVGKLDEARQVYNQMPCKDITAQTALMSGLIQNGRI 344
Query: 44 -----------ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTF 92
D V W +MI GY R R EAL LFR+M N ++
Sbjct: 345 DEADQMFSRIGAHDVVCWNSMIAGYSRSGRMDEALNLFRQMPIKNS-----------VSW 393
Query: 93 NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
N +I Y + G +++A +F M K+ +W ++I G + AL
Sbjct: 394 N-------TMISGYAQAGQMDRATEIFQAMREKNIVSWNSLIAGFLQNNLYLDALKSLVM 446
Query: 153 MLRASIRLDEVTYVGVLSACTH 174
M + + D+ T+ LSAC +
Sbjct: 447 MGKEGKKPDQSTFACTLSACAN 468
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 18/153 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M AL+ F +M ++V+SW +V+GY+ G + A Q F ++P + V W M+ G +
Sbjct: 189 MHLALQFFESMTERNVVSWNLMVAGYVKSGDLSSAWQLFEKIPNPNAVSWVTMLCGLAKY 248
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
+ EA LF M + N+ ++N A+I Y + V++A ++F
Sbjct: 249 GKMAEARELFDRMPSKNV-----------VSWN-------AMIATYVQDLQVDEAVKLFK 290
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
KM KD +WT +I G G D A +++QM
Sbjct: 291 KMPHKDSVSWTTIINGYIRVGKLDEARQVYNQM 323
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 81/173 (46%), Gaps = 23/173 (13%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+ IF NM +K+++++ +++S ++ ARQ F QM R+ V W MI GYL N
Sbjct: 36 AIRIFFNMTHKNLVTYNSMISVLAKNARIRDARQLFDQMSLRNLVSWNTMIAGYLHNNMV 95
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
EA LF M RD F+ ++T Y + G +EKA+ + +
Sbjct: 96 EEASELFDVMP----ERDNFSWALMITC--------------YTRKGKLEKARELLELVP 137
Query: 124 RK-DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
K D W AMI G A G + A +F QM D V+Y +L+ T N
Sbjct: 138 DKLDTACWNAMIAGYAKKGQFNDAKKVFEQMPAK----DLVSYNSMLAGYTQN 186
>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 107/191 (56%), Gaps = 22/191 (11%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE 65
E+F M ++++SW +++GY G++++AR+ F +MP +D V W+ MI G+ F E
Sbjct: 193 ELFDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEE 252
Query: 66 ALTLFREMQTSNIRRDEFTTVRILTTFNND---------------------IFVGIALID 104
A + FRE+Q +R +E + +L+ + V AL+D
Sbjct: 253 AFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLD 312
Query: 105 MYCKCGDVEKAQRVFWKML-RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEV 163
Y KCG+V AQ VF +++ ++ +WT+M+ LA+ GHG+ A+ +F +M + IR DE+
Sbjct: 313 TYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEI 372
Query: 164 TYVGVLSACTH 174
++ +L AC+H
Sbjct: 373 AFISLLYACSH 383
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 18/155 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
TT++S Y G V AR+ F +MPE + + W AM+ R + LF
Sbjct: 145 TTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDMKGGRELF--------- 195
Query: 80 RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAI 139
+ VR L ++N ++ Y K G++E A+ +F +M KD +W+ MIVG A
Sbjct: 196 --DLMPVRNLMSWN-------VMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAH 246
Query: 140 SGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+G+ + A F ++ R +R +E + GVLSAC
Sbjct: 247 NGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQ 281
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 22/145 (15%)
Query: 31 QVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR-DEFT----- 84
+D A + F P D + +I G +R +++L F EM+ ++ D F+
Sbjct: 54 SLDYACRLFRYTPNPDVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIV 113
Query: 85 -------TVRI---------LTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
+VR+ + + +FVG LI MY +CG V A++VF +M +
Sbjct: 114 KAAANLRSVRVGIQLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAI 173
Query: 129 TWTAMIVGLAISGHGDTALDMFSQM 153
W AM+ G ++F M
Sbjct: 174 AWNAMVTACCRGGDMKGGRELFDLM 198
>gi|345505226|gb|AEN99837.1| chlororespiratory reduction 4, partial [Lobularia maritima]
Length = 570
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 113/225 (50%), Gaps = 53/225 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV--- 60
A ++F M KD+ISW +++ GY+ G+++ A+ F MP RD V W MIDGY ++
Sbjct: 204 ASKLFAEMPEKDLISWNSLIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFV 263
Query: 61 ---------------------------NRFR-EALTLFREMQT-SNIRRDEFTTVRILTT 91
N++ EAL +F +M+ S++ DE T V +L+
Sbjct: 264 HKAKSLFDVMPHRDVVAYNSMMGGYVQNKYHMEALEVFYDMEKESHLSPDETTLVIVLSA 323
Query: 92 ---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTW 130
F D +G+ALIDMY KCG +++A VF + K W
Sbjct: 324 IAQLGRLSKAVDIHLYIVEKRFLLDGKLGVALIDMYSKCGSIQQAMAVFEGIENKSIDHW 383
Query: 131 TAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
AMI GLA+ G G+ A DM ++ + I+ D +T+VGVL+AC+H+
Sbjct: 384 NAMIGGLAVHGLGEAAFDMLMEIEKRFIKPDYITFVGVLNACSHS 428
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 90/172 (52%), Gaps = 22/172 (12%)
Query: 4 ALEIFGNM--KNKDVISWTTIVSGYINRGQ-VDIARQYFAQMPERDYVLWTAMIDGYLRV 60
A E+F M + K++ISW +++ GY R VDIA + FA+MPE+D + W ++IDGY++
Sbjct: 170 ARELFDLMPKEKKNLISWNSMIGGYAQREDGVDIASKLFAEMPEKDLISWNSLIDGYVKH 229
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
R +A LF M RRD T +ID Y K G V KA+ +F
Sbjct: 230 GRIEDAKGLFDVMP----RRDVVTWA--------------TMIDGYAKLGFVHKAKSLFD 271
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS-IRLDEVTYVGVLSA 171
M +D + +M+ G + + AL++F M + S + DE T V VLSA
Sbjct: 272 VMPHRDVVAYNSMMGGYVQNKYHMEALEVFYDMEKESHLSPDETTLVIVLSA 323
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 21/136 (15%)
Query: 46 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL---------------- 89
D LW A+I + R+AL L M +N+ D+F+ +
Sbjct: 49 DPFLWNAVIKSHSHGVDPRQALFLLCSMIENNVPVDKFSLSLVTKACSRLGFAKEGMQIH 108
Query: 90 -----TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGD 144
T +D+F+ LI +Y KC + A++VF +M ++D ++ +MI G G +
Sbjct: 109 GFLTKTVICSDLFLQNCLIGLYIKCSCLGYARQVFDRMPQRDSVSYNSMIDGYVKCGLIE 168
Query: 145 TALDMFSQMLRASIRL 160
+A ++F M + L
Sbjct: 169 SARELFDLMPKEKKNL 184
>gi|357126462|ref|XP_003564906.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 582
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 64/192 (33%), Positives = 97/192 (50%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F N+D++ W +++ GY +G++D AR F +MPER+ + W+ ++DGY+R
Sbjct: 225 ARELFDETPNRDLVCWCSMIDGYARQGRMDEARALFEEMPERNVISWSIVVDGYVRCGEP 284
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
EAL LF+ M I+ D V T D+ V AL
Sbjct: 285 SEALELFQRMLRCGIKPDRVAAVGAFTACAQLGALEQGRWLHSYLEKKKVLFDVVVQTAL 344
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG ++ + +F M K TW MI+GL G A+ +F QM +D+
Sbjct: 345 IDMYMKCGRLDLGKLIFESMPDKSVVTWNVMIIGLGTHSCGLHAVKLFYQMEAEGAPIDD 404
Query: 163 VTYVGVLSACTH 174
++ + VL+ACTH
Sbjct: 405 LSVLAVLTACTH 416
Score = 93.6 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 51/165 (30%), Positives = 87/165 (52%), Gaps = 25/165 (15%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR----VNRFREALTL 69
+D++SW ++V+GY+ G++++A++ F MP RD W MID Y + V+R RE L
Sbjct: 172 RDLVSWNSMVAGYVACGELELAQELFDGMPLRDAFSWATMIDAYGKRSGGVDRARE---L 228
Query: 70 FREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT 129
F E T N D+ ++ID Y + G +++A+ +F +M ++ +
Sbjct: 229 FDE------------------TPNRDLVCWCSMIDGYARQGRMDEARALFEEMPERNVIS 270
Query: 130 WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
W+ ++ G G AL++F +MLR I+ D V VG +AC
Sbjct: 271 WSIVVDGYVRCGEPSEALELFQRMLRCGIKPDRVAAVGAFTACAQ 315
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 20/127 (15%)
Query: 45 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL--------------- 89
RD W +I + + R AL F M+ + + D +T +L
Sbjct: 76 RDAFPWNTLIRLHAPASP-RNALAYFACMRRAAVEPDAYTFPAVLKACACGVLGLPVHAE 134
Query: 90 ---TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTA 146
T + D+F AL+ YC+ GD ++VF R D +W +M+ G G + A
Sbjct: 135 AVRTGMDGDLFTRNALVSFYCRIGDCRSGRKVFDHGAR-DLVSWNSMVAGYVACGELELA 193
Query: 147 LDMFSQM 153
++F M
Sbjct: 194 QELFDGM 200
>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
gi|194705708|gb|ACF86938.1| unknown [Zea mays]
gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
Length = 635
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 70/183 (38%), Positives = 90/183 (49%), Gaps = 21/183 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ D + W+ + Y G++D AR F +MP RD V WTAM+D Y R E LF
Sbjct: 194 DADAVVWSALADMYAKFGRLDDARSVFDRMPVRDVVSWTAMLDRYFDAGRDGEGFRLFVR 253
Query: 73 MQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIALIDMYCKCGD 111
M S I +EFT +L + + F G AL+ MY K GD
Sbjct: 254 MMRSGILPNEFTYAGVLRACAEFTSEKLGKQVHGRMAKSRTGDSCFAGSALVHMYSKYGD 313
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+ A RVF M + D +WTAMI G A +G D AL F +L + R D VT+VGVLSA
Sbjct: 314 MGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCFDMLLSSGFRPDHVTFVGVLSA 373
Query: 172 CTH 174
C H
Sbjct: 374 CAH 376
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 59/195 (30%), Positives = 93/195 (47%), Gaps = 27/195 (13%)
Query: 4 ALEIFGNMKNKDVISWTTIVS--GYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVN 61
AL + ++ + DV S+ T+V+ G RG AR F +MP RD+ W+A++ ++R
Sbjct: 80 ALALLSSLPSTDVCSYNTLVAALGRSPRGLAS-ARALFDRMPRRDHFSWSAIVSAHVRHG 138
Query: 62 RFREALTLFREM---QTSNIRRDEFTTVR---------------------ILTTFNNDIF 97
+ R AL ++R M + +EFT + + D
Sbjct: 139 QPRAALAIYRRMLREPGGSGADNEFTASSALAAATAARCARAGRELHCHVVRRGIDADAV 198
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
V AL DMY K G ++ A+ VF +M +D +WTAM+ +G +F +M+R+
Sbjct: 199 VWSALADMYAKFGRLDDARSVFDRMPVRDVVSWTAMLDRYFDAGRDGEGFRLFVRMMRSG 258
Query: 158 IRLDEVTYVGVLSAC 172
I +E TY GVL AC
Sbjct: 259 ILPNEFTYAGVLRAC 273
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 18/144 (12%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDG 56
MG A+ +F M D++SWT ++SGY GQ D A F + D+V + ++
Sbjct: 314 MGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCFDMLLSSGFRPDHVTFVGVLSA 373
Query: 57 YLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQ 116
+ L +F + +D++ + +ID+ + G E+A+
Sbjct: 374 CAHAGLVDKGLGIFHSI------KDKYGIEHTADHY-------ACVIDLLSRSGLFERAE 420
Query: 117 RVFWKM-LRKDKFTWTAMIVGLAI 139
+ M ++ +KF W +++ G I
Sbjct: 421 DMINTMPVKPNKFLWASLLGGCRI 444
>gi|297744236|emb|CBI37206.3| unnamed protein product [Vitis vinifera]
Length = 664
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 102/192 (53%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F + +D ISWT++++GY N GQ+ A F MP+RD V WT M+ G+++ F
Sbjct: 308 AQSLFDTIPVRDKISWTSMINGYFNVGQIAKACYLFNNMPDRDAVAWTVMVSGHVQNELF 367
Query: 64 REALTLFREMQTSNI---------------------RRDEFTTVRILTTFNNDIFVGIAL 102
EA LF EM+ + + +F + + T F D+ + +L
Sbjct: 368 AEATYLFSEMRVKGVSPLNSTFSILLGAAGAMAYLDQGRQFHCLLMKTQFEFDLILQNSL 427
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I MY KCG++ A +F KM+ +D +W +MI+G + G AL +F ML + +
Sbjct: 428 ISMYAKCGEIGDAYSIFSKMISRDLISWNSMIMGFSHHGLTSEALKVFEAMLTSGTHPNS 487
Query: 163 VTYVGVLSACTH 174
VT++G+LSAC+H
Sbjct: 488 VTFLGILSACSH 499
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 13/161 (8%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A F M ++V+SWT+++ G N G++ AR+ F MPER+ V W +M+ G +R +
Sbjct: 126 ACRFFEEMPERNVVSWTSLLCGLANAGRIGEARELFNVMPERNVVSWNSMLVGLIRSGQL 185
Query: 64 REALTLFREMQTSN-----------IRRDEFTTVRIL--TTFNNDIFVGIALIDMYCKCG 110
EA +F EM + R+L + ++ ++I YC+ G
Sbjct: 186 EEARRVFNEMPVKSQVSWNVMIAGYAEHSRMEEARVLFDGMGDRNVVTWTSMISGYCRAG 245
Query: 111 DVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
+V++ +F KM ++ +WTAMI G A +G AL+ S
Sbjct: 246 NVQEGYCLFQKMPERNVVSWTAMIGGFAWNGFYKEALNSMS 286
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 21/165 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M K +SW +++GY +++ AR F M +R+ V WT+MI GY R
Sbjct: 188 ARRVFNEMPVKSQVSWNVMIAGYAEHSRMEEARVLFDGMGDRNVVTWTSMISGYCRAGNV 247
Query: 64 REALTLFREMQTSNI---------------RRDEFTTVRILTTFNNDIFVGIALIDMYCK 108
+E LF++M N+ ++ ++ T N ++I+ Y +
Sbjct: 248 QEGYCLFQKMPERNVVSWTAMIGGFAWNGFYKEALNSMSYNTQSCN------SMINGYIR 301
Query: 109 CGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
G +EKAQ +F + +DK +WT+MI G G A +F+ M
Sbjct: 302 IGQLEKAQSLFDTIPVRDKISWTSMINGYFNVGQIAKACYLFNNM 346
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 18/150 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M ++V+++ ++SGY+ G++ A ++F +MPER+ V WT+++ G R
Sbjct: 95 ARALFEIMPERNVVTYNAMLSGYVQCGRLSDACRFFEEMPERNVVSWTSLLCGLANAGRI 154
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
EA LF M N+ N + VG+ + G +E+A+RVF +M
Sbjct: 155 GEARELFNVMPERNV------------VSWNSMLVGLI------RSGQLEEARRVFNEMP 196
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
K + +W MI G A + A +F M
Sbjct: 197 VKSQVSWNVMIAGYAEHSRMEEARVLFDGM 226
>gi|6562284|emb|CAB62654.1| putative protein [Arabidopsis thaliana]
Length = 486
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 98/173 (56%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ A ++F + +D++SW +I++G + G V A + F +MP+++ + W MI YL
Sbjct: 146 LDLAKKLFVEIPKRDIVSWNSIIAGMVRNGDVLAAHKLFDEMPDKNIISWNIMISAYLGA 205
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
N +++LFREM + + +E T V +L + ALIDMY KC +V A+R+F
Sbjct: 206 NNPGVSISLFREMVRAGFQGNESTLVLLLNACGRSARLKEALIDMYGKCKEVGLARRIFD 265
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+ ++K TW MI+ + G + L++F M+ +R DEVT+VGVL C
Sbjct: 266 SLSIRNKVTWNVMILAHCLHGRPEGGLELFEAMINGMLRPDEVTFVGVLCGCA 318
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 48/103 (46%), Gaps = 31/103 (30%)
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISG------------------- 141
+L+ MY CG ++ A+++F ++ ++D +W ++I G+ +G
Sbjct: 135 SLMHMYTCCGALDLAKKLFVEIPKRDIVSWNSIIAGMVRNGDVLAAHKLFDEMPDKNIIS 194
Query: 142 ------------HGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+ ++ +F +M+RA + +E T V +L+AC
Sbjct: 195 WNIMISAYLGANNPGVSISLFREMVRAGFQGNESTLVLLLNAC 237
>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
Length = 645
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 99/192 (51%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M + ++S TT+++ Y G++D AR F M ERD V W MI GY +
Sbjct: 195 ARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVP 254
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
E+L LFR M + +E T + +L+ ++ VG AL
Sbjct: 255 NESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTAL 314
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG +E A+ VF ++ KD W +MIVG A+ G AL +F +M + +
Sbjct: 315 IDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTD 374
Query: 163 VTYVGVLSACTH 174
+T++G+LSAC H
Sbjct: 375 ITFIGILSACGH 386
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 48/195 (24%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT 85
Y G++D + F E + ++A+I +++ F A + +M + + + FT
Sbjct: 89 YAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTF 148
Query: 86 VRILTT-----------------FNNDIFVGIALIDMYCKCGDV---------------- 112
+L + +D++V L+D+Y + GDV
Sbjct: 149 SSVLKSCSLESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLV 208
Query: 113 ---------------EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
+KA+ +F M +D W MI G A SG + +L +F +ML A
Sbjct: 209 SLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAK 268
Query: 158 IRLDEVTYVGVLSAC 172
+EVT + VLSAC
Sbjct: 269 AIPNEVTVLAVLSAC 283
>gi|356507694|ref|XP_003522599.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Glycine max]
Length = 535
Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats.
Identities = 67/188 (35%), Positives = 105/188 (55%), Gaps = 23/188 (12%)
Query: 10 NMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 69
+M +K+V+SW T++ YI G ++ AR+ F MP+RD V W ++I G + V + A+ L
Sbjct: 209 SMPHKNVVSWNTVIGRYIRLGDIEGARRVFQIMPQRDAVSWNSLIAGCVSVKDYEGAMGL 268
Query: 70 FREMQTSNIRRDEFTTVRIL------------TTFNNDI---------FVGIALIDMYCK 108
F EMQ + +R E T + +L + + + ++G AL++MY K
Sbjct: 269 FSEMQNAEVRPTEVTLISVLGACAETGALEMGSKIHESLKACGHKIEGYLGNALLNMYSK 328
Query: 109 CGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRA--SIRLDEVTYV 166
CG + A VF M K W AMIVGLA+ G+ + AL +FS+M ++R + VT++
Sbjct: 329 CGKLNSAWEVFNGMRIKTLSCWNAMIVGLAVHGYCEEALQLFSEMESGLDTVRPNRVTFL 388
Query: 167 GVLSACTH 174
GVL AC+H
Sbjct: 389 GVLIACSH 396
Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 18/152 (11%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
+++ Y G V +A+ F ++ R V W MI Y RVN + A L M N+
Sbjct: 158 SLLCMYSQCGLVHVAQHLFDEISNRSLVSWNIMISAYDRVNDSKSADYLLESMPHKNV-- 215
Query: 81 DEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAIS 140
++N +I Y + GD+E A+RVF M ++D +W ++I G
Sbjct: 216 ---------VSWN-------TVIGRYIRLGDIEGARRVFQIMPQRDAVSWNSLIAGCVSV 259
Query: 141 GHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+ A+ +FS+M A +R EVT + VL AC
Sbjct: 260 KDYEGAMGLFSEMQNAEVRPTEVTLISVLGAC 291
>gi|225437951|ref|XP_002269187.1| PREDICTED: pentatricopeptide repeat-containing protein At1g32415,
mitochondrial-like [Vitis vinifera]
Length = 743
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 102/192 (53%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F + +D ISWT++++GY N GQ+ A F MP+RD V WT M+ G+++ F
Sbjct: 387 AQSLFDTIPVRDKISWTSMINGYFNVGQIAKACYLFNNMPDRDAVAWTVMVSGHVQNELF 446
Query: 64 REALTLFREMQTSNI---------------------RRDEFTTVRILTTFNNDIFVGIAL 102
EA LF EM+ + + +F + + T F D+ + +L
Sbjct: 447 AEATYLFSEMRVKGVSPLNSTFSILLGAAGAMAYLDQGRQFHCLLMKTQFEFDLILQNSL 506
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I MY KCG++ A +F KM+ +D +W +MI+G + G AL +F ML + +
Sbjct: 507 ISMYAKCGEIGDAYSIFSKMISRDLISWNSMIMGFSHHGLTSEALKVFEAMLTSGTHPNS 566
Query: 163 VTYVGVLSACTH 174
VT++G+LSAC+H
Sbjct: 567 VTFLGILSACSH 578
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 88/174 (50%), Gaps = 19/174 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A E+F M ++V+SW +++ G I GQ++ AR+ F +MP + V W MI GY
Sbjct: 154 IGEARELFNVMPERNVVSWNSMLVGLIRSGQLEEARRVFNEMPVKSQVSWNVMIAGYAEH 213
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
+R EA LF M N + ++I YC+ G+V++ +F
Sbjct: 214 SRMEEARVLFDGMGDRN------------------VVTWTSMISGYCRAGNVQEGYCLFQ 255
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML-RASIRLDEVTYVGVLSACT 173
KM ++ +WTAMI G A +G AL +F +M ++ ++ T++ + AC
Sbjct: 256 KMPERNVVSWTAMIGGFAWNGFYKEALLLFLEMKGNYDMKPNDETFISLAYACA 309
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 25/157 (15%)
Query: 16 VISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 75
V+ WT+++S + G +D AR F MPER+ V + AM+ GY++ R +A F EM
Sbjct: 76 VVCWTSLLSKFSKNGFIDEARALFEIMPERNVVTYNAMLSGYVQCGRLSDACRFFEEMPE 135
Query: 76 SNI------------------RRDEFTTVRILTTFN-NDIFVGIALIDMYCKCGDVEKAQ 116
N+ R+ F + + N + VG+ + G +E+A+
Sbjct: 136 RNVVSWTSLLCGLANAGRIGEARELFNVMPERNVVSWNSMLVGLI------RSGQLEEAR 189
Query: 117 RVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
RVF +M K + +W MI G A + A +F M
Sbjct: 190 RVFNEMPVKSQVSWNVMIAGYAEHSRMEEARVLFDGM 226
Score = 37.4 bits (85), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
++I+ Y + G +EKAQ +F + +DK +WT+MI G G A +F+ M
Sbjct: 373 SMINGYIRIGQLEKAQSLFDTIPVRDKISWTSMINGYFNVGQIAKACYLFNNM 425
>gi|224058579|ref|XP_002299552.1| predicted protein [Populus trichocarpa]
gi|222846810|gb|EEE84357.1| predicted protein [Populus trichocarpa]
Length = 505
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 105/195 (53%), Gaps = 29/195 (14%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+GFA ++F + + DV+SW +++SG ++ G V+ +Q F +M +R V W +IDGY++
Sbjct: 177 IGFACQVFNKIDDPDVVSWNSMISGLVDLGFVEEGKQMFDRMSKRSLVTWNCLIDGYVKA 236
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFN-----------------NDIFV----G 99
EA LF +M+ FT V +LT + N I V G
Sbjct: 237 GLLMEARELFDQMR--------FTMVSVLTACSYLGALEQGEWMQAHIEKNGIDVNSVLG 288
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL++M+ KCG +E+A VF + +D W ++I LA GHG A +FS MLR++
Sbjct: 289 TALVEMFAKCGSIERALSVFKSIEERDVGAWNSIIHKLAAHGHGQEAFAIFSDMLRSNTL 348
Query: 160 LDEVTYVGVLSACTH 174
LD + ++G+LS C H
Sbjct: 349 LDGIIFLGLLSVCRH 363
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 19/163 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ +A IF KN + ++ ++ GY R + PE L+ +M+
Sbjct: 75 INYAQSIFNFDKNPNTFAYNVMIRGYAQR-----------EKPENALSLFYSML---CNA 120
Query: 61 NRFREALTL-FREMQTSNIRR-DEFTTVRILT---TFNNDIFVGIALIDMYCKCGDVEKA 115
N + LT F S +R +E V L + D+FV +LI MY CG + A
Sbjct: 121 NSGQNKLTFPFVLKACSQVRAIEEGKQVHGLVFKHGLSEDLFVQNSLISMYSSCGLIGFA 180
Query: 116 QRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
+VF K+ D +W +MI GL G + MF +M + S+
Sbjct: 181 CQVFNKIDDPDVVSWNSMISGLVDLGFVEEGKQMFDRMSKRSL 223
>gi|147833409|emb|CAN68525.1| hypothetical protein VITISV_018083 [Vitis vinifera]
Length = 1796
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 106/192 (55%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F +++ D I ++++ Y N G++D ARQ F MP + + W +MI G+ +
Sbjct: 359 ACKLFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACP 418
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
EAL LF EM +R D+F+ +++ + D + +L
Sbjct: 419 IEALDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSL 478
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+D YCKCG VE +++F +M++ D+ W +M++G A +GHG AL++F QM ++ +
Sbjct: 479 VDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTD 538
Query: 163 VTYVGVLSACTH 174
+T+VGVLSAC H
Sbjct: 539 ITFVGVLSACDH 550
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 106/227 (46%), Gaps = 55/227 (24%)
Query: 2 GFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVN 61
G +LE+F +M +KD SW ++SG+ G +++AR+ F +MP ++ + W +MI GY
Sbjct: 90 GKSLELFDSMPHKDAFSWNVVISGFAKEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNG 149
Query: 62 RFREALTLFREMQTSNIRR---DEFTTVRILTTFNN---------------------DIF 97
R +EA+ LF+++ + + R D F ++ N D
Sbjct: 150 RPKEAVGLFKDLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQIHARIVVDEVEFDSV 209
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLA------------------- 138
+G +L+++Y KCGD++ A V M D F+ +A+I G A
Sbjct: 210 LGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNXC 269
Query: 139 -------ISGH-----GDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
ISG+ AL++F+ M R ++ D T+ VLSAC+
Sbjct: 270 VVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACS 316
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 97/222 (43%), Gaps = 52/222 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A + MK D S + ++SGY + G+++ AR+ F VLW +MI GY+ N
Sbjct: 227 ANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNXCVVLWNSMISGYVANNEA 286
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
EAL LF M+ ++ D T +L+ F NDI + AL
Sbjct: 287 LEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSAL 346
Query: 103 IDMYCK-------------------------------CGDVEKAQRVFWKMLRKDKFTWT 131
+DMY K CG ++ A+++F M K +W
Sbjct: 347 VDMYSKCRRPDDACKLFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWN 406
Query: 132 AMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+MIVG + + ALD+F +M + +R+D+ + GV+SAC
Sbjct: 407 SMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVISACA 448
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 93/190 (48%), Gaps = 19/190 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
+L +F ++ +K++ISW + ++ G+++ AR F +MP+RD V W MI GY+ F
Sbjct: 764 SLRVFEDIIDKNLISWNIFLKAFVRFGELERARDVFDEMPKRDVVSWNTMISGYVSFGLF 823
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFN-------------------NDIFVGIALID 104
+A F EMQ + IR FT +L+ + +++ VG +LI
Sbjct: 824 DDAFRFFSEMQKAGIRPSGFTYSTLLSFVSSACRGKQIHASMIRNGVDLSNVVVGNSLIG 883
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVT 164
MY K G V+ A VF M D +W ++I SG+ + AL F M D+ T
Sbjct: 884 MYGKFGVVDYAFGVFITMEELDIISWNSLIWSCGKSGYQNLALRQFVLMRSVGYSPDQFT 943
Query: 165 YVGVLSACTH 174
V++ C++
Sbjct: 944 VSTVITVCSN 953
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 89/193 (46%), Gaps = 24/193 (12%)
Query: 3 FALEI-FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVN 61
FAL I G + N V S + + NR ++ + + F ++ + D VL AMI Y
Sbjct: 964 FALCIRVGFLSNSIVSSASIDLFSKCNR--LEDSVRVFEEIYQWDSVLCNAMISSYAWHG 1021
Query: 62 RFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGI 100
AL LF N+R EFT +L+ +D+ V
Sbjct: 1022 FGENALQLFVLTLRENLRPTEFTLSIVLSAVSILLPVDQGSQIHSLVVKSGLESDVIVAS 1081
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
+L++MY K G ++ A + F K+ +D +W MI+GLA +G AL++F ++L
Sbjct: 1082 SLVEMYAKFGLIDSAMKTFAKIGARDLISWNTMIMGLAYNGRVSKALEIFKELLIGGPPP 1141
Query: 161 DEVTYVGVLSACT 173
DE+T GVL AC
Sbjct: 1142 DEITLAGVLLACN 1154
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 68/143 (47%), Gaps = 21/143 (14%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN 94
A+Q F +MP+R+ W MI+GYL+ ++L LF M +
Sbjct: 61 AQQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMP------------------HK 102
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM- 153
D F +I + K G++E A+R+F +M K+ W +MI G A +G A+ +F +
Sbjct: 103 DAFSWNVVISGFAKEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLS 162
Query: 154 LRASIRLDEVTYV--GVLSACTH 174
L R T+V V+ ACT+
Sbjct: 163 LNPLERFCGDTFVLATVVGACTN 185
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+G L+ MY +C + +AQ++F +M +++ F+W MI G SG +L++F M
Sbjct: 44 IGNRLLQMYSRCNSMREAQQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSM 99
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 18/97 (18%)
Query: 57 YLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQ 116
Y R N REA LF EM N F +I+ Y K G K+
Sbjct: 52 YSRCNSMREAQQLFEEMPKRNC------------------FSWNTMIEGYLKSGSKGKSL 93
Query: 117 RVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+F M KD F+W +I G A G+ + A +F++M
Sbjct: 94 ELFDSMPHKDAFSWNVVISGFAKEGNLEVARRLFNEM 130
Score = 42.4 bits (98), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 31/114 (27%)
Query: 88 ILTTFNNDIFVGIALIDMYCKC-------------------------------GDVEKAQ 116
I FN F+G +D+Y + G++E+A+
Sbjct: 737 IKVGFNTHTFLGNRCLDLYSQLGTGNDSLRVFEDIIDKNLISWNIFLKAFVRFGELERAR 796
Query: 117 RVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLS 170
VF +M ++D +W MI G G D A FS+M +A IR TY +LS
Sbjct: 797 DVFDEMPKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQKAGIRPSGFTYSTLLS 850
>gi|224059226|ref|XP_002299777.1| predicted protein [Populus trichocarpa]
gi|222847035|gb|EEE84582.1| predicted protein [Populus trichocarpa]
Length = 439
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 105/188 (55%), Gaps = 21/188 (11%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 67
F +K K+ SW T++ G++ G++ A + F +MPER + WT +I+G++++ F EAL
Sbjct: 71 FDELKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERGVISWTVLINGFVKMGLFEEAL 130
Query: 68 TLFREMQTSNIRRDEFTTVRILTTFNNDIFVGI---------------------ALIDMY 106
FR+MQ S + D T V +L+ N +G+ +LID+Y
Sbjct: 131 EWFRKMQVSKVEPDRVTIVTVLSACANLGALGLGLWVHRYALKKGLRDNVKICNSLIDLY 190
Query: 107 CKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYV 166
+CG +E A++VF KM + +W ++I GLA +G + AL+ F M + + ++V++
Sbjct: 191 SRCGAIELARQVFEKMGERTLVSWNSIIGGLAANGFTEEALEHFDLMQKQGFKPNDVSFT 250
Query: 167 GVLSACTH 174
G L+AC+H
Sbjct: 251 GALTACSH 258
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
++ VG AL+DMY KCG VE ++ F ++ K+ F+W MI G +G A+++F +M
Sbjct: 47 NLMVGTALVDMYAKCGHVELSRLCFDELKVKNSFSWNTMIDGFVRNGKIREAIEVFDEM 105
>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
Length = 671
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 66/192 (34%), Positives = 104/192 (54%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F ++DV+S+T +++GY +RG + A++ F ++P +D V W AMI GY +
Sbjct: 118 AYKVFDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCY 177
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
+EAL LF EM N+R DE T V +L+ F++++ + AL
Sbjct: 178 KEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNAL 237
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
ID+Y KCG+VE A +F + KD +W +I G AL +F +MLR+ ++
Sbjct: 238 IDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPND 297
Query: 163 VTYVGVLSACTH 174
VT + VL AC H
Sbjct: 298 VTMLSVLPACAH 309
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 60/177 (33%), Positives = 92/177 (51%), Gaps = 23/177 (12%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
++ Y G+V+ A F + +D + W +I GY +N ++EAL LF+EM S +
Sbjct: 237 LIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPN 296
Query: 82 EFTTVRILTT-----------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
+ T + +L N + +LIDMY KCGD+E A +V
Sbjct: 297 DVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQV 356
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
F ML K +W AMI G A+ G D + D+FS+M + I D++T+VG+LSAC+H+
Sbjct: 357 FNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHS 413
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/83 (42%), Positives = 52/83 (62%)
Query: 93 NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
+ D+ ALI Y GD+ AQ++F ++ KD +W AMI G A +G AL++F +
Sbjct: 127 HRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEE 186
Query: 153 MLRASIRLDEVTYVGVLSACTHN 175
M++ ++R DE TYV VLSAC H+
Sbjct: 187 MMKMNVRPDESTYVTVLSACAHS 209
>gi|297797141|ref|XP_002866455.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp.
lyrata]
gi|297312290|gb|EFH42714.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp.
lyrata]
Length = 1401
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 62/196 (31%), Positives = 103/196 (52%), Gaps = 21/196 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G AL++F +DV+++ ++ G + ++ AR+ F MP RD V W ++I GY ++
Sbjct: 582 IGSALQLFDENPQRDVVTYNVLIDGLVKACEIVRARELFDSMPFRDLVSWNSLIAGYAQM 641
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVG 99
N+ REA++LF EM ++ D V L+ D F+
Sbjct: 642 NQCREAISLFDEMIGLGLKPDNVAIVSTLSACAQSGDLEKGKAIHDYTKKKRLFIDSFLA 701
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
L+D Y KCG ++ A +F K FTW AMI GLA+ G+G+ +D F +M+ + I+
Sbjct: 702 TGLVDFYAKCGFIDTAMEIFHLSSDKTLFTWNAMITGLAMHGNGELTVDYFHKMVSSGIK 761
Query: 160 LDEVTYVGVLSACTHN 175
D V+++ VL C+H+
Sbjct: 762 PDGVSFISVLVGCSHS 777
>gi|297734691|emb|CBI16742.3| unnamed protein product [Vitis vinifera]
Length = 674
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 99/190 (52%), Gaps = 18/190 (9%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A E F M NKD+ +W +++ Y++ + A + F M ER+ V W AMIDGY R
Sbjct: 304 LAREYFDQMPNKDIAAWNAMITAYVDECLIVEASELFNLMTERNIVTWNAMIDGYARHRP 363
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTT----------FNNDIFVGI--------ALID 104
EA+ M S IR +E T ILT+ I VG ALI
Sbjct: 364 DGEAMKHLILMLRSCIRPNETTMTIILTSCWGMLELMQAHALAIVVGCECETSLSNALIT 423
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVT 164
MY + GD+ ++ F + KD +WTAM++ GHGD AL +F ML++ + DE+T
Sbjct: 424 MYSRIGDISSSRIAFESLKAKDVVSWTAMLLAFTYHGHGDHALHVFGHMLKSGTKPDEIT 483
Query: 165 YVGVLSACTH 174
+VGVLSAC+H
Sbjct: 484 FVGVLSACSH 493
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 90/213 (42%), Gaps = 44/213 (20%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M K+V+SWTT+V GY G +D AR F QMPE++ + WTAM+ Y+ R
Sbjct: 181 ACQLFDQMPAKNVVSWTTMVLGYARNGLIDQARSVFNQMPEKNTISWTAMMKSYVDNGRT 240
Query: 64 REALTLFREMQTSN-----------------------------------------IRRDE 82
EAL LF EM N + R+
Sbjct: 241 DEALKLFHEMPQRNLYSWNTMISGCLDGKRVNEAFKLFHLMPLRNAVSWTIMVSGLARNG 300
Query: 83 FTTVR---ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAI 139
FT + N DI A+I Y + +A +F M ++ TW AMI G A
Sbjct: 301 FTKLAREYFDQMPNKDIAAWNAMITAYVDECLIVEASELFNLMTERNIVTWNAMIDGYAR 360
Query: 140 SGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
A+ MLR+ IR +E T +L++C
Sbjct: 361 HRPDGEAMKHLILMLRSCIRPNETTMTIILTSC 393
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 18/150 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M + D +S+T +++ Y+ ++ A + F MP+R V +AMIDGY +
Sbjct: 88 ARKLFDEMPHHDNVSYTAMITAYLKNNELRKAEKLFQTMPDRTIVAESAMIDGYAKAGLM 147
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
A +F M +N +F +LI Y + G V KA ++F +M
Sbjct: 148 DSAQKVFDAMIDTN------------------VFSWTSLISGYFRDGQVAKACQLFDQMP 189
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
K+ +WT M++G A +G D A +F+QM
Sbjct: 190 AKNVVSWTTMVLGYARNGLIDQARSVFNQM 219
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 60/124 (48%), Gaps = 18/124 (14%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G V AR+ F +MP D V +TAMI YL+ N R+A LF+ M I +
Sbjct: 83 GNVRGARKLFDEMPHHDNVSYTAMITAYLKNNELRKAEKLFQTMPDRTIVAES------- 135
Query: 90 TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDM 149
A+ID Y K G ++ AQ+VF M+ + F+WT++I G G A +
Sbjct: 136 -----------AMIDGYAKAGLMDSAQKVFDAMIDTNVFSWTSLISGYFRDGQVAKACQL 184
Query: 150 FSQM 153
F QM
Sbjct: 185 FDQM 188
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 22/125 (17%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+++ Y G + +R F + +D V WTAM+ + AL +F M S +
Sbjct: 419 NALITMYSRIGDISSSRIAFESLKAKDVVSWTAMLLAFTYHGHGDHALHVFGHMLKSGTK 478
Query: 80 RDEFTTVRILTTFNNDIFV--------------GI--------ALIDMYCKCGDVEKAQR 117
DE T V +L+ ++ V G+ L+D+ + G V +A
Sbjct: 479 PDEITFVGVLSACSHAGLVKKGQKLFDSMSRAYGLEPRAEHYSCLVDILGRAGQVHEAMD 538
Query: 118 VFWKM 122
V WKM
Sbjct: 539 VVWKM 543
>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 750
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 97/195 (49%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M E+F M ++ SW ++SGY G + AR F MP+RD V W A+I GY +
Sbjct: 297 MDMGRELFEEMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQN 356
Query: 61 NRFREALTLFREMQ--TSNIRRDEFTTVR-------------------ILTTFNNDIFVG 99
+ EA+ + EM+ ++ R F + T + VG
Sbjct: 357 GLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVG 416
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+ MYCKCG +++A VF + KD +W M+ G A G G AL +F M+ A ++
Sbjct: 417 NALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVK 476
Query: 160 LDEVTYVGVLSACTH 174
DE+T VGVLSAC+H
Sbjct: 477 PDEITMVGVLSACSH 491
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 94/186 (50%), Gaps = 13/186 (6%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A ++F + +D+ISW T++SGY G + AR+ F + P RD WTAM+ Y++
Sbjct: 204 LGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQD 263
Query: 61 NRFREALTLFREMQ-----TSNIRRDEFTTVRIL----TTFNNDIFVGIA----LIDMYC 107
EA +F EM + N+ + + + F F I +I YC
Sbjct: 264 GMLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGYC 323
Query: 108 KCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVG 167
+ GD+ +A+ +F M ++D +W A+I G A +G + A++M +M R L+ T+
Sbjct: 324 QNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCC 383
Query: 168 VLSACT 173
LSAC
Sbjct: 384 ALSACA 389
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 17/162 (10%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F +M KDV+SW ++SGY+ G VD AR F +MP ++ + W ++ Y+R R EA
Sbjct: 117 LFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEA 176
Query: 67 LTLFR-----EMQTSN------IRRDEFTTVRILTTFNN----DIFVGIALIDMYCKCGD 111
LF E+ + N ++R+ R L F+ D+ +I Y + GD
Sbjct: 177 RRLFESKSDWELISCNCLMGGYVKRNMLGDARQL--FDQIPVRDLISWNTMISGYAQDGD 234
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+ +A+R+F + +D FTWTAM+ G D A +F +M
Sbjct: 235 LSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEM 276
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 18/148 (12%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
AL +F M ++ +S+ ++SGY+ + +AR F +MP +D W M+ GY R R
Sbjct: 51 LALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYARNRR 110
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM 122
R+A LF M ++ ++N A++ Y + G V++A+ VF +M
Sbjct: 111 LRDARMLFDSMPEKDV-----------VSWN-------AMLSGYVRSGHVDEARDVFDRM 152
Query: 123 LRKDKFTWTAMIVGLAISGHGDTALDMF 150
K+ +W ++ SG + A +F
Sbjct: 153 PHKNSISWNGLLAAYVRSGRLEEARRLF 180
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 22/162 (13%)
Query: 10 NMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 69
+ ++ + T +S ++ G D+A F MP R+ V + AMI GYLR +F A L
Sbjct: 27 HFEDPHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDL 86
Query: 70 FREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT 129
F +M + D+F ++ Y + + A+ +F M KD +
Sbjct: 87 FDKMP------------------HKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVS 128
Query: 130 WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
W AM+ G SGH D A D+F +M + +++ G+L+A
Sbjct: 129 WNAMLSGYVRSGHVDEARDVFDRMPHK----NSISWNGLLAA 166
>gi|147846621|emb|CAN83751.1| hypothetical protein VITISV_040023 [Vitis vinifera]
Length = 496
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 107/226 (47%), Gaps = 52/226 (23%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER--------------- 45
MG A +F M +DVISW T+++GY G++D A++ F +MPER
Sbjct: 81 MGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPERNLVSXNSMLXGFVKC 140
Query: 46 ----------------DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
D V W +M+ Y + + EAL LF +M ++ E T V +L
Sbjct: 141 GNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMXAVGVKPSEATVVSLL 200
Query: 90 T---------------TFNND------IFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
+ T+ ND VG AL+DMY KCG + A +VF M KD
Sbjct: 201 SACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVL 260
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
W +I G+AI GH A +F +M A + +++T+V +LSAC+H
Sbjct: 261 AWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDITFVAMLSACSH 306
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 88/174 (50%), Gaps = 18/174 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A ++F ++D++SW ++ GY+ RG++ AR F +M RD + W MI+GY V
Sbjct: 50 LGAAKQLFNLCSDRDLVSWNAMIDGYVKRGEMGHARMVFDRMVCRDVISWNTMINGYAIV 109
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
+ EA LF EM N+ N + G + KCG+VE A +F
Sbjct: 110 GKIDEAKRLFDEMPERNL------------VSXNSMLXG------FVKCGNVEDAFGLFS 151
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+M +D +W +M+ A G + AL +F QM ++ E T V +LSAC H
Sbjct: 152 EMPCRDVVSWNSMLACYAQCGKPNEALALFDQMXAVGVKPSEATVVSLLSACAH 205
>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
Length = 675
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 69/196 (35%), Positives = 105/196 (53%), Gaps = 25/196 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F ++DV+S T +++GY +RG AR+ F ++ ERD V W AMI GY+ R+
Sbjct: 118 ARKVFDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRY 177
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT-------------------------FNNDIFV 98
EAL LF+EM +N+R DE T V +++ F++ + +
Sbjct: 178 EEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKI 237
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
ALID+Y KCGDVE A +F + KD +W +I G + AL +F +MLR+
Sbjct: 238 VNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGE 297
Query: 159 RLDEVTYVGVLSACTH 174
++VT + VL AC H
Sbjct: 298 CPNDVTLLSVLPACAH 313
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 59/177 (33%), Positives = 90/177 (50%), Gaps = 23/177 (12%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
++ Y G V+ A F + +D V W +I GY N ++EAL LF+EM S +
Sbjct: 241 LIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPN 300
Query: 82 EFTTVRILTT-----------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
+ T + +L N+ + +LIDMY KCGD+E A +V
Sbjct: 301 DVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQV 360
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
F ML + +W AMI G A+ G + A D+FS+M + D++T+VG+LSAC+H+
Sbjct: 361 FNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHS 417
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 41/194 (21%), Positives = 88/194 (45%), Gaps = 21/194 (10%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYV----LWTAMIDGYL 58
+A+ +F ++ +++ W T++ G+ + A + + +M ++ + ++
Sbjct: 16 YAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCA 75
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTTF-----------------NNDIFVGIA 101
+ F E + ++ D + +++ + + D+ A
Sbjct: 76 KSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTA 135
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LI Y GD A++VF ++ +D +W AMI G +G + AL++F +M+R ++R D
Sbjct: 136 LITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPD 195
Query: 162 EVTYVGVLSACTHN 175
E T V V+SAC +
Sbjct: 196 EGTLVSVVSACAQS 209
>gi|413933352|gb|AFW67903.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 788
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 21/193 (10%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
+A +F ++ K+ + W +++SGY G++ A F +MP R+ V W MI GY R
Sbjct: 432 YAQRVFNSLPEKNTVCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRR 491
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIA 101
F +AL F M S E T +L N +IF+G A
Sbjct: 492 FGDALNYFYAMLASGHIPGEITLSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTA 551
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L DMY K GD++ ++RVF++M K+ TWTAM+ GLA +G + ++ +F M+ I +
Sbjct: 552 LCDMYAKSGDLDSSRRVFYQMPEKNNITWTAMVQGLAENGFAEESISLFEDMIENGIAPN 611
Query: 162 EVTYVGVLSACTH 174
E T++ +L AC+H
Sbjct: 612 EHTFLAILFACSH 624
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 63/222 (28%), Positives = 97/222 (43%), Gaps = 53/222 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M K V+S+TT+V + RG V A + + + P +TAMI G++R
Sbjct: 168 ARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFFTAMISGFVRNELH 227
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT----------------------FNNDIFVGIA 101
++A T+FR+M T ++R + T + ++ F I V +
Sbjct: 228 KDAFTVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVKCNLFEKSIEVHNS 287
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI--------------------------V 135
LI +Y + GD A+RVF M +D +WTA++
Sbjct: 288 LITLYLRMGDAAAARRVFDDMEVRDVVSWTALLDVYADLGDLDGARRVLDAMPARNEVSW 347
Query: 136 GLAISGH---GDT--ALDMFSQMLRASIRLDEVTYVGVLSAC 172
G I+ H GDT AL ++SQML R + + VLSAC
Sbjct: 348 GTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSAC 389
Score = 82.8 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 21/171 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F +M+ +DV+SWT ++ Y + G +D AR+ MP R+ V W +I + +
Sbjct: 301 ARRVFDDMEVRDVVSWTALLDVYADLGDLDGARRVLDAMPARNEVSWGTLIARHEQKGDT 360
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
EAL L+ +M R + +L+ + ++FV +L
Sbjct: 361 AEALKLYSQMLADGCRPNISCFSSVLSACATLQDLRGGTRIHANALKMGSSTNLFVSSSL 420
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
IDMYCKC AQRVF + K+ W ++I G + +G A +F++M
Sbjct: 421 IDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYSWNGKMVEAEGLFNKM 471
>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Vitis vinifera]
Length = 729
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 106/195 (54%), Gaps = 22/195 (11%)
Query: 2 GFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVN 61
G A +F M ++VI+WT +V+GY ++ AR+YF MPER V W AM+ GY +
Sbjct: 180 GQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNG 239
Query: 62 RFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGI 100
EAL LF EM + I DE T V +++ ++ + FV
Sbjct: 240 LAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRT 299
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRA-SIR 159
AL+DMY K GD++ A+++F M ++ TW +MI G A +G A+++F +M+ A +
Sbjct: 300 ALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLT 359
Query: 160 LDEVTYVGVLSACTH 174
DEVT V V+SAC H
Sbjct: 360 PDEVTMVSVISACGH 374
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 93/177 (52%), Gaps = 22/177 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN-I 78
T ++ Y G +D AR+ F MP R+ V W +MI GY + + A+ LF+EM T+ +
Sbjct: 299 TALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKL 358
Query: 79 RRDEFTTVRILTTF-----------------NNDIFVGI----ALIDMYCKCGDVEKAQR 117
DE T V +++ N I + I A+I MY +CG +E A+R
Sbjct: 359 TPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKR 418
Query: 118 VFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
VF +M +D ++ +I G A GHG A+++ S M I D VT++GVL+AC+H
Sbjct: 419 VFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSH 475
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 78/205 (38%), Gaps = 80/205 (39%)
Query: 49 LWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT----------------F 92
++T+M+ Y + + + ++ +MQ +R D F ++ +
Sbjct: 67 VFTSMLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAGTGGIGFHAHVLKLGH 126
Query: 93 NNDIFVGIALIDMYCKCGDVEKAQRVF--------------------WK----------- 121
+D FV A+IDMY + G + A++VF WK
Sbjct: 127 GSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLF 186
Query: 122 --MLRKDKFTWTAMIVGLA--------------------------ISGH-----GDTALD 148
M ++ TWTAM+ G A +SG+ + AL
Sbjct: 187 DVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALR 246
Query: 149 MFSQMLRASIRLDEVTYVGVLSACT 173
+F +M+ A I DE T+V V+SAC+
Sbjct: 247 LFDEMVNAGIEPDETTWVTVISACS 271
>gi|147861249|emb|CAN79322.1| hypothetical protein VITISV_018985 [Vitis vinifera]
Length = 932
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 99/190 (52%), Gaps = 18/190 (9%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A E F M NKD+ +W +++ Y++ + A + F M ER+ V W AMIDGY R
Sbjct: 210 LAREYFDQMPNKDIAAWNAMITAYVDECLIVEASELFNLMTERNIVTWNAMIDGYARHRP 269
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTT----------FNNDIFVGI--------ALID 104
EA+ M S IR +E T ILT+ I VG ALI
Sbjct: 270 DGEAMKHLILMLRSCIRPNETTMTIILTSCWGMLELMQAHALAIVVGCECETSLSNALIT 329
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVT 164
MY + GD+ ++ F + KD +WTAM++ GHGD AL +F ML++ + DE+T
Sbjct: 330 MYSRIGDISSSRIAFESLKAKDVVSWTAMLLAFTYHGHGDHALHVFGHMLKSGTKPDEIT 389
Query: 165 YVGVLSACTH 174
+VGVLSAC+H
Sbjct: 390 FVGVLSACSH 399
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 78/158 (49%), Gaps = 24/158 (15%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M K+V+SWTT+V GY G +D AR F QMPE++ + WTAM+ Y+ R
Sbjct: 87 ACQLFDQMPAKNVVSWTTMVLGYARNGLIDQARSVFNQMPEKNTISWTAMMKSYVDNGRT 146
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGD---VEKAQRVFW 120
EAL LF EM N L ++N M C D V +A ++F
Sbjct: 147 DEALKLFHEMPQRN-----------LYSWNT----------MISGCLDGKRVNEAFKLFH 185
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
M ++ +WT M+ GLA +G A + F QM I
Sbjct: 186 LMPLRNAVSWTIMVSGLARNGFTKLAREYFDQMPNKDI 223
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 18/143 (12%)
Query: 11 MKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 70
M + D +S+T +++ Y+ ++ A + F MP+R V +AMIDGY + A +F
Sbjct: 1 MPHHDNVSYTAMITAYLKNNELRKAEKLFQTMPDRTIVAESAMIDGYAKAGLMDSAQKVF 60
Query: 71 REMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTW 130
M +N +F +LI Y + G V KA ++F +M K+ +W
Sbjct: 61 DAMIDTN------------------VFSWTSLISGYFRDGQVAKACQLFDQMPAKNVVSW 102
Query: 131 TAMIVGLAISGHGDTALDMFSQM 153
T M++G A +G D A +F+QM
Sbjct: 103 TTMVLGYARNGLIDQARSVFNQM 125
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 79/155 (50%), Gaps = 18/155 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M ++ +++ + ++ GY G +D A++ F M + + WT++I GY R +
Sbjct: 25 AEKLFQTMPDRTIVAESAMIDGYAKAGLMDSAQKVFDAMIDTNVFSWTSLISGYFRDGQV 84
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+A LF +M N+ +TT ++ Y + G +++A+ VF +M
Sbjct: 85 AKACQLFDQMPAKNVV--SWTT----------------MVLGYARNGLIDQARSVFNQMP 126
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
K+ +WTAM+ +G D AL +F +M + ++
Sbjct: 127 EKNTISWTAMMKSYVDNGRTDEALKLFHEMPQRNL 161
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 64/159 (40%), Gaps = 25/159 (15%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+++ Y G + +R F + +D V WTAM+ + AL +F M S +
Sbjct: 325 NALITMYSRIGDISSSRIAFESLKAKDVVSWTAMLLAFTYHGHGDHALHVFGHMLKSGTK 384
Query: 80 RDEFTTVRILTTFNNDIFV--------------GI--------ALIDMYCKCGDVEKAQR 117
DE T V +L+ ++ V G+ L+D+ + G V +A
Sbjct: 385 PDEITFVGVLSACSHAGLVKKGQKLFDSMSRAYGLEPRAEHYSCLVDILGRAGQVHEAMD 444
Query: 118 VFWKM--LRKDKFTWTAMIVGLAISGHGDTALDMFSQML 154
V WKM +D A++ + G+ + A D Q L
Sbjct: 445 VVWKMPECERDGAVLGALLGACRLHGNVEMA-DYIGQKL 482
>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
Length = 607
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 67/178 (37%), Positives = 101/178 (56%), Gaps = 25/178 (14%)
Query: 22 IVSGYINRGQVDIARQYFAQMPE----RDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 77
I+ Y G++ AR+ F +MPE +D V WTAMIDG++R AL FR MQ N
Sbjct: 171 IMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGEN 230
Query: 78 IRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVEKAQ 116
+R +EFT V +L+ + ++FVG ALI+MY +CG +++AQ
Sbjct: 231 VRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQ 290
Query: 117 RVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
VF +M +D T+ MI GL+++G A+++F M+ +R VT+VGVL+AC+H
Sbjct: 291 TVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSH 348
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 25/168 (14%)
Query: 32 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT 91
+D A + F + L+TA+IDG++ + +A+ L+ M +I D + IL
Sbjct: 80 IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKA 139
Query: 92 ---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKM----LRKD 126
+++ V + ++++Y KCG++ A+RVF +M + KD
Sbjct: 140 CGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKD 199
Query: 127 KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
WTAMI G + + AL+ F M ++R +E T V VLSAC+
Sbjct: 200 TVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQ 247
Score = 43.1 bits (100), Expect = 0.045, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 40/80 (50%)
Query: 93 NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
+ D F+ L+ KC ++ A R+F + + +TA+I G SG+ A+ ++S+
Sbjct: 61 SQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSR 120
Query: 153 MLRASIRLDEVTYVGVLSAC 172
ML SI D +L AC
Sbjct: 121 MLHDSILPDNYLMASILKAC 140
>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570 [Vitis vinifera]
Length = 561
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 110/192 (57%), Gaps = 22/192 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +++V+S+TT++ GY G + AR F + PERD V W+A+I GY++ +
Sbjct: 239 ARKMFDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALISGYVQNGQP 298
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFN----------------------NDIFVGIA 101
EA+ +F EM + N++ DEF V +++ + + V A
Sbjct: 299 NEAVKIFLEMCSRNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAA 358
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDM KCG +++A ++F +M ++D ++ +M+ GL+I G G A+ +FS+ML + D
Sbjct: 359 LIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPD 418
Query: 162 EVTYVGVLSACT 173
+V + +L+AC+
Sbjct: 419 DVAFTVILTACS 430
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 91/171 (53%), Gaps = 18/171 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M ++V+SWT +++GY + + AR+ F +MPE++ V W A+I GY++
Sbjct: 177 ARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDL 236
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
R A +F EM N+ FTT +ID Y K GD+ A+ VF +
Sbjct: 237 RSARKMFDEMPHRNVV--SFTT----------------MIDGYAKSGDMASARFVFEEAP 278
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+D W+A+I G +G + A+ +F +M +++ DE V ++SAC+
Sbjct: 279 ERDVVAWSALISGYVQNGQPNEAVKIFLEMCSRNVKPDEFIMVSLMSACSQ 329
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 66/155 (42%), Gaps = 18/155 (11%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVL----WTAMIDGYL 58
+ +F + + + W T + GY V + F +M D V + ++I
Sbjct: 75 YTTSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACS 134
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
+V +E + F + D+FV +LID+Y KCG++ A++V
Sbjct: 135 KVCGVKEGVA--------------FHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKV 180
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
F +M ++ +WTAMI G A A +F +M
Sbjct: 181 FDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEM 215
>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Brachypodium distachyon]
Length = 892
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 71/195 (36%), Positives = 101/195 (51%), Gaps = 23/195 (11%)
Query: 4 ALEIFGNM-KNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A +F +M + V+S T +++ Y + G +D AR F +P +D+V W AMIDGY + R
Sbjct: 440 ARALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHGR 499
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNN----------------------DIFVGI 100
EAL LFR M S + DE T V +L+ + VG
Sbjct: 500 PNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGT 559
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
ALIDMYCKCG + A VF + KD W AMI G A+ G AL+MF Q +
Sbjct: 560 ALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEMFVQSREQGLWP 619
Query: 161 DEVTYVGVLSACTHN 175
++T++G+L+AC+H+
Sbjct: 620 TDITFIGLLNACSHS 634
>gi|297800868|ref|XP_002868318.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
lyrata]
gi|297314154|gb|EFH44577.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
lyrata]
Length = 1057
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 61/193 (31%), Positives = 110/193 (56%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F +++ K+ ISWT +VSGY G+ + A + F ++P ++ WTA+I G+++ +
Sbjct: 96 AKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRRLPVKNLYSWTALISGFVQSGKG 155
Query: 64 REALTLFREMQ----------------------TSNIRRDEFTTVRILTTFNNDIFVGIA 101
EA ++F EM+ ++I + + I F++ +F+ A
Sbjct: 156 LEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNA 215
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMY KC DV A+ +F +M +D +WT++IVG+A G + AL ++ +M+ ++ +
Sbjct: 216 LIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDEMVSHGVKPN 275
Query: 162 EVTYVGVLSACTH 174
EVT+VG++ AC+H
Sbjct: 276 EVTFVGLIYACSH 288
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 67/134 (50%), Gaps = 22/134 (16%)
Query: 42 MPERDYVLWTAMIDGYLRVNRFREAL-TLFREMQTSNIRRDEFT------------TVR- 87
MP RD++ W +++ + N + L +S +R D+F +++
Sbjct: 1 MPHRDHIAWASVLTALNQANLSGKTLWVFSSVGSSSGLRPDDFVFSALVKACANLGSIKL 60
Query: 88 --------ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAI 139
I++ ++ND V +L+DMY KC ++ A+ VF + K+ +WTAM+ G A
Sbjct: 61 GKQVHCHFIVSEYSNDDVVKSSLVDMYAKCRLLDCAKAVFDSIRVKNTISWTAMVSGYAK 120
Query: 140 SGHGDTALDMFSQM 153
SG + AL++F ++
Sbjct: 121 SGRKEEALELFRRL 134
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 22/156 (14%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
++ Y V A+ F++M RD V WT++I G + + +AL L+ EM + ++ +
Sbjct: 216 LIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDEMVSHGVKPN 275
Query: 82 EFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM-----LRKDKFTWTAMIVG 136
E T FVG LI G V K + +F M +R +T ++
Sbjct: 276 EVT------------FVG--LIYACSHVGFVAKGRELFQSMTKDYGIRPSLQHYTCLLDL 321
Query: 137 LAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
L SG D A ++ M DE T+ +LSAC
Sbjct: 322 LGRSGLLDEAENLIHTM---PFPPDEPTWAALLSAC 354
>gi|226528958|ref|NP_001141436.1| uncharacterized protein LOC100273546 [Zea mays]
gi|194704572|gb|ACF86370.1| unknown [Zea mays]
gi|414877969|tpg|DAA55100.1| TPA: hypothetical protein ZEAMMB73_905907 [Zea mays]
Length = 700
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 106/192 (55%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+ +F M NKD++SW T+++GY GQ+ A F +M R+ V W ++I G+++ +RF
Sbjct: 378 AMLLFQRMPNKDMVSWNTMIAGYAQDGQMHKAIGIFRRMNRRNTVSWNSVISGFVQNDRF 437
Query: 64 REALTLFREMQTSNIRRD---------------------EFTTVRILTTFNNDIFVGIAL 102
+AL F M+ R D + + + + ND F G AL
Sbjct: 438 VDALHHFMLMRRGTNRADWSTYASCLRACANLAVLHVGRQLHNLLVRSGHINDSFAGNAL 497
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I Y KCG + +A+++F +M+ KD +W A+I G A +G G A+ +F +M +R DE
Sbjct: 498 ISTYAKCGRILEAKQIFDEMVYKDIVSWNALIDGYASNGQGTEAIAVFREMEANGVRPDE 557
Query: 163 VTYVGVLSACTH 174
VT+VG+LSAC+H
Sbjct: 558 VTFVGILSACSH 569
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 93/216 (43%), Gaps = 48/216 (22%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A F +++ +VISW T+++GY G++ AR F +MPER+ V W M+DGY+ ++
Sbjct: 223 ASSFFAKIESPNVISWVTLLNGYCRAGRIADARDLFDRMPERNVVAWNVMLDGYVHLSPI 282
Query: 64 REALTLFREMQTSN-----------------------IRRDEFTTVRILTTFNND----- 95
EA LF EM N + + F V T +
Sbjct: 283 EEACKLFDEMPIKNSISWTTIISGLARAGKLQEAKDLLDKMSFNCVAAKTALMHGYLQRN 342
Query: 96 -------IFVGIALIDMYC---------KCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAI 139
IF G+ + D C +CG +E+A +F +M KD +W MI G A
Sbjct: 343 MADDARRIFDGMEVHDTVCWNTMISGYVQCGILEEAMLLFQRMPNKDMVSWNTMIAGYAQ 402
Query: 140 SGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
G A+ +F +M R + V++ V+S N
Sbjct: 403 DGQMHKAIGIFRRM----NRRNTVSWNSVISGFVQN 434
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 80/202 (39%), Gaps = 49/202 (24%)
Query: 4 ALEIFGNMKNKDVISWTTIVSG-------------------------------YINRGQV 32
A ++F M K+ ISWTTI+SG Y+ R
Sbjct: 285 ACKLFDEMPIKNSISWTTIISGLARAGKLQEAKDLLDKMSFNCVAAKTALMHGYLQRNMA 344
Query: 33 DIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTF 92
D AR+ F M D V W MI GY++ EA+ LF+ M
Sbjct: 345 DDARRIFDGMEVHDTVCWNTMISGYVQCGILEEAMLLFQRMP------------------ 386
Query: 93 NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
N D+ +I Y + G + KA +F +M R++ +W ++I G + AL F
Sbjct: 387 NKDMVSWNTMIAGYAQDGQMHKAIGIFRRMNRRNTVSWNSVISGFVQNDRFVDALHHFML 446
Query: 153 MLRASIRLDEVTYVGVLSACTH 174
M R + R D TY L AC +
Sbjct: 447 MRRGTNRADWSTYASCLRACAN 468
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 74/150 (49%), Gaps = 19/150 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A++ F M KD+ SW +++G++ G ++ A +FA++ + + W +++GY R R
Sbjct: 193 AVQFFDEMV-KDMTSWNLMLAGFVRTGDLNAASSFFAKIESPNVISWVTLLNGYCRAGRI 251
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+A LF M N+ +N ++D Y +E+A ++F +M
Sbjct: 252 ADARDLFDRMPERNV-----------VAWN-------VMLDGYVHLSPIEEACKLFDEMP 293
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
K+ +WT +I GLA +G A D+ +M
Sbjct: 294 IKNSISWTTIISGLARAGKLQEAKDLLDKM 323
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 17/152 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M ++ +SW +++ + G+V AR F +MP RD WT M+ Y R
Sbjct: 68 ARALFDGMPGRNTVSWNAMIAALSDHGRVADARSLFDRMPVRDEFSWTVMVSCYARGGD- 126
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
L L R++ D + +N A+I Y K G + A ++ +M
Sbjct: 127 ---LELARDVL------DRMPGDKCTACYN-------AMISGYAKNGRFDDAMKLLREMP 170
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155
D +W + + GL SG A+ F +M++
Sbjct: 171 APDLVSWNSALAGLTQSGEMVRAVQFFDEMVK 202
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 18/124 (14%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
GQ+ AR+ F MP R+ V + AM+ R R EA LF M N
Sbjct: 32 GQLAAARRLFDAMPLRNTVTYNAMLSALARHGRIDEARALFDGMPGRNT----------- 80
Query: 90 TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDM 149
++N A+I G V A+ +F +M +D+F+WT M+ A G + A D+
Sbjct: 81 VSWN-------AMIAALSDHGRVADARSLFDRMPVRDEFSWTVMVSCYARGGDLELARDV 133
Query: 150 FSQM 153
+M
Sbjct: 134 LDRM 137
>gi|359492783|ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
[Vitis vinifera]
Length = 575
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 98/195 (50%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A E+F M ++ +W++++SGY +G V AR F ++P R+ V W ++I GY +
Sbjct: 240 MEAAREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQN 299
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVG 99
EAL F +MQ DE T +L+ + + FV
Sbjct: 300 GFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVL 359
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
L+DMY KCGD+ A+ +F M +++ W +MI G AI G AL+ F +M +
Sbjct: 360 NGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEG 419
Query: 160 LDEVTYVGVLSACTH 174
DE+T++ VLSAC H
Sbjct: 420 PDEITFLSVLSACAH 434
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 15/184 (8%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE 65
++F M ++ ++W ++ GY+ G A F +M R V W MIDG+ R
Sbjct: 150 KVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAVTWIEMIDGFARSGDTET 209
Query: 66 ALTLFREMQTS--NI-----------RRDEFTTVRIL--TTFNNDIFVGIALIDMYCKCG 110
A F ++ + N+ R E R + + F ++I YCK G
Sbjct: 210 ARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKG 269
Query: 111 DVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLS 170
+V++A+ +F ++ ++ W ++I G A +G + AL+ F +M DEVT VLS
Sbjct: 270 NVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLS 329
Query: 171 ACTH 174
AC+
Sbjct: 330 ACSQ 333
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 20/124 (16%)
Query: 50 WTAMIDGYLRVNRFREALTLFREMQTSNI--------------------RRDEFTTVRIL 89
W +I YL REAL ++ ++ + I
Sbjct: 63 WCHLIRSYLSQGAPREALLVYTGLRRKGVYLLGVAPLVLKACASLSIVKHGKALHAESIK 122
Query: 90 TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDM 149
+ D+ +G +L+ MY KCG+V +++VF M ++ TW AMI G +G +A+ +
Sbjct: 123 NGVDFDVMIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLL 182
Query: 150 FSQM 153
F +M
Sbjct: 183 FEKM 186
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 21/155 (13%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
+V Y G + AR F M R+ W +MI G+ + +EAL F M+ S+ D
Sbjct: 362 LVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPD 421
Query: 82 EFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT----WTAMIVGL 137
E T + +L+ + FV L +F +M + T + +I L
Sbjct: 422 EITFLSVLSACAHGGFVNAGL--------------EIFSRMEKYGLTTGIKHYGCLIDLL 467
Query: 138 AISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+G A D+ +M ++ ++V + +L AC
Sbjct: 468 GRAGRIKEAYDLIKRM---PVKPNDVVWGALLGAC 499
>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 613
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 64/175 (36%), Positives = 96/175 (54%), Gaps = 21/175 (12%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
T+V Y G + A + F M ER+ V W ++I+GY R EALTLFREM +
Sbjct: 180 TLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEP 239
Query: 81 DEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVF 119
D FT V +L+ + ++ G AL+D+Y KCG + +A +VF
Sbjct: 240 DGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVF 299
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+M K +WT++IVGLA++G G AL++F ++ R + E+T+VGVL AC+H
Sbjct: 300 DEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSH 354
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 48/159 (30%), Positives = 71/159 (44%), Gaps = 21/159 (13%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFT---------- 84
A Q F+Q+ + W MI GY AL L+R+M S I D T
Sbjct: 93 AHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAK 152
Query: 85 -----------TVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
++ I F + +FV L+ MY CG E A ++F M ++ TW ++
Sbjct: 153 LMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSV 212
Query: 134 IVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
I G A++G + AL +F +M + D T V +LSAC
Sbjct: 213 INGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSAC 251
>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
Length = 1434
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 64/175 (36%), Positives = 96/175 (54%), Gaps = 21/175 (12%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
T+V Y G + A + F M ER+ V W ++I+GY R EALTLFREM +
Sbjct: 35 TLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEP 94
Query: 81 DEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVF 119
D FT V +L+ + ++ G AL+D+Y KCG + +A +VF
Sbjct: 95 DGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVF 154
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+M K +WT++IVGLA++G G AL++F ++ R + E+T+VGVL AC+H
Sbjct: 155 DEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSH 209
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 85 TVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGD 144
++ I F + +FV L+ MY CG E A ++F M ++ TW ++I G A++G +
Sbjct: 19 SIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPN 78
Query: 145 TALDMFSQMLRASIRLDEVTYVGVLSAC 172
AL +F +M + D T V +LSAC
Sbjct: 79 EALTLFREMGLRGVEPDGFTMVSLLSAC 106
>gi|357119334|ref|XP_003561397.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Brachypodium distachyon]
Length = 635
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 64/181 (35%), Positives = 100/181 (55%), Gaps = 21/181 (11%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
+DV++W +++GY+ G V AR+ F +MP RD V W+ ++ GY++ AL +FR+M
Sbjct: 195 RDVVTWNAVLAGYVRAGMVRAAREVFEEMPVRDEVSWSTLVGGYVKEGELDVALGVFRDM 254
Query: 74 QTSNIRRDEFTTVRILTT-----------FNNDIF----------VGIALIDMYCKCGDV 112
+R +E V L+ F +++ VG AL+DM+ KCG V
Sbjct: 255 VEKGVRVNEAAVVTALSAAAQMGLLEHGRFVHEVVQRTGMPVSVNVGAALVDMFSKCGCV 314
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
A+ VF M R+D F W AMI GLA G G A+++F + L + ++T+VGVL+AC
Sbjct: 315 AVAREVFDGMPRRDVFAWNAMICGLASHGLGQDAVELFWRFLDEGLWPTDITFVGVLNAC 374
Query: 173 T 173
+
Sbjct: 375 S 375
Score = 40.8 bits (94), Expect = 0.21, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 32/109 (29%)
Query: 95 DIFVGIALIDMYCKCGDVEK--------------------------------AQRVFWKM 122
D++V AL Y CGDV A+ VF +M
Sbjct: 164 DLYVRNALTHFYGVCGDVGAMRTVFDELPRVRDVVTWNAVLAGYVRAGMVRAAREVFEEM 223
Query: 123 LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+D+ +W+ ++ G G D AL +F M+ +R++E V LSA
Sbjct: 224 PVRDEVSWSTLVGGYVKEGELDVALGVFRDMVEKGVRVNEAAVVTALSA 272
>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
Length = 526
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 63/192 (32%), Positives = 105/192 (54%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F ++DV+S+T ++ GY +RG ++ A++ F ++P +D V W AMI GY +
Sbjct: 142 ARKVFDQSSHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNY 201
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
+EAL LF++M +N+R DE T V +++ F +++ + AL
Sbjct: 202 KEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNAL 261
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
ID+Y KCG+VE A +F + KD +W +I G AL +F +MLR+ ++
Sbjct: 262 IDLYSKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPND 321
Query: 163 VTYVGVLSACTH 174
VT + +L AC H
Sbjct: 322 VTMLSILPACAH 333
Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 61/177 (34%), Positives = 95/177 (53%), Gaps = 23/177 (12%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
++ Y G+V+ A F + +D + W +I GY +N ++EAL LF+EM S +
Sbjct: 261 LIDLYSKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPN 320
Query: 82 EFTTVRILTT---------------FNNDIFVGI--------ALIDMYCKCGDVEKAQRV 118
+ T + IL + N G+ +LIDMY KCGD+E A++V
Sbjct: 321 DVTMLSILPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQV 380
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
F ML + +W AMI G A+ G + A D+FS+M + I D++T+VG+LSAC+H+
Sbjct: 381 FDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHS 437
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 49/161 (30%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ T+++S Y+ G+++ AR+ F Q RD V +T
Sbjct: 122 DLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYT----------------------- 158
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
ALI Y G +E AQ++F ++ KD +W AMI
Sbjct: 159 --------------------------ALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMI 192
Query: 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
G A +G+ AL++F M++ ++R DE T V V+SAC +
Sbjct: 193 SGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQS 233
Score = 43.9 bits (102), Expect = 0.022, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 23/138 (16%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T+++ Y G ++ A+Q F M R W AMI G+ + A LF +M+ + I
Sbjct: 362 TSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGID 421
Query: 80 RDEFTTVRILTTFNND--------IFVGIA--------------LIDMYCKCGDVEKAQR 117
D+ T V +L+ ++ IF ++ +ID+ CG ++A+
Sbjct: 422 PDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKE 481
Query: 118 VFWKM-LRKDKFTWTAMI 134
+ M + D W +++
Sbjct: 482 MIRTMPMEPDGVIWCSLL 499
>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 62/191 (32%), Positives = 101/191 (52%), Gaps = 21/191 (10%)
Query: 5 LEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFR 64
+E+ ++ +V+ W ++ G + G + A+ F +MP R V W MI GY + F
Sbjct: 193 MELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFI 252
Query: 65 EALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALI 103
EA+ LF+EMQ+SNI + T V +L D +G AL+
Sbjct: 253 EAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALV 312
Query: 104 DMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEV 163
DMY KCG ++KA +VF + +++ TW+A+I A+ G + A+ F M +A + ++V
Sbjct: 313 DMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDV 372
Query: 164 TYVGVLSACTH 174
Y+G+LSAC+H
Sbjct: 373 AYIGILSACSH 383
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 49/212 (23%), Positives = 74/212 (34%), Gaps = 72/212 (33%)
Query: 32 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFR---EALTLFREMQTS-NIRRDEFTTVR 87
+D AR F QMPE + W ++ N EAL LF M ++ + FT
Sbjct: 68 IDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPS 127
Query: 88 ILTT---------------------FNNDIFVGIALIDMYCKC----------------- 109
+L F+ D FV L+ MY C
Sbjct: 128 VLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDF 187
Query: 110 ------------------------------GDVEKAQRVFWKMLRKDKFTWTAMIVGLAI 139
GD++ A+ +F +M + +W MI G A
Sbjct: 188 DGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQ 247
Query: 140 SGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+GH A+++F +M ++I + VT V VL A
Sbjct: 248 NGHFIEAINLFQEMQSSNIDPNYVTLVSVLPA 279
>gi|242082594|ref|XP_002441722.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
gi|241942415|gb|EES15560.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
Length = 528
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 70/193 (36%), Positives = 101/193 (52%), Gaps = 21/193 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+++F M KD ++W +++ GYI VD A +F Q+P R V WTA+I G+++ +
Sbjct: 167 AVKVFDRMSLKDEVTWGSMLHGYIKCAGVDSALSFFDQVPVRSVVAWTALITGHVQGRQP 226
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
AL LF M R T V +L+ + +I V AL
Sbjct: 227 VRALELFGRMVLEGHRPTHVTIVGVLSACADIGALDLGRVIHGYGSKCNASLNIIVSNAL 286
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY K G +E A VF ++ KD FTWT MI + G G AL++F MLRA + +
Sbjct: 287 MDMYAKSGHIEMAFSVFQEVQSKDSFTWTTMISCCTVQGDGKKALELFQDMLRAGVVPNS 346
Query: 163 VTYVGVLSACTHN 175
VT+V VLSAC+H+
Sbjct: 347 VTFVSVLSACSHS 359
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 58/199 (29%), Positives = 91/199 (45%), Gaps = 52/199 (26%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT 85
Y + G+V AR+ F ++P D + +T+++ +L+++ REA++LF + + R D F
Sbjct: 57 YADFGRVADARKLFDEIPNPDLISFTSLMSLHLQLDNQREAISLFARVVAAGHRPDGFAV 116
Query: 86 VRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124
V L+ + ++ VG ALIDMY +CG E A +VF +M
Sbjct: 117 VGALSASSGAGDQVVGRAVHGLIFRLGLDGEVVVGNALIDMYSQCGKFESAVKVFDRMSL 176
Query: 125 KDKFTWTAMIVGLA--------------------------ISGHGD-----TALDMFSQM 153
KD+ TW +M+ G I+GH AL++F +M
Sbjct: 177 KDEVTWGSMLHGYIKCAGVDSALSFFDQVPVRSVVAWTALITGHVQGRQPVRALELFGRM 236
Query: 154 LRASIRLDEVTYVGVLSAC 172
+ R VT VGVLSAC
Sbjct: 237 VLEGHRPTHVTIVGVLSAC 255
>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 634
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 65/188 (34%), Positives = 99/188 (52%), Gaps = 21/188 (11%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 67
F M K+V+SWT+++ G VD AR +F QMPER+ + W AMI Y++ RF E L
Sbjct: 267 FDVMPIKNVVSWTSMLCALAKHGSVDAARDWFEQMPERNIISWNAMISCYVQGGRFPETL 326
Query: 68 TLFREMQTSNIRRDEFTTVRILTTF--NNDIFVGI-------------------ALIDMY 106
L+ M++ + DE T +L+ N D+ G +LIDMY
Sbjct: 327 GLYNRMKSLGLTPDEVTLAGVLSVHGQNGDLASGRMIHCYIQDSFSDPGVTVLNSLIDMY 386
Query: 107 CKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYV 166
+CG V+ + +F +M K+ +W +I LA+ G A+ F M+ + DE+T+V
Sbjct: 387 ARCGQVDTSISLFTEMPNKNTISWNVIIGALAMHGRAQEAVMFFRAMVSDAFSPDEITFV 446
Query: 167 GVLSACTH 174
G+LSAC+H
Sbjct: 447 GLLSACSH 454
Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 53/151 (35%), Positives = 72/151 (47%), Gaps = 22/151 (14%)
Query: 30 GQVDIARQYFAQM-PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRI 88
G + +R+ FA+M P R+ V W MI G + EA LFREM+ + D FT V +
Sbjct: 156 GSLRDSRRLFAEMAPHRNVVSWNTMIGGCAQAGETSEACALFREMRRQGVLADVFTFVSL 215
Query: 89 LTTFNN---------------------DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDK 127
L + D+ +G AL+DMY KCGD+ A R F M K+
Sbjct: 216 LLVCSKEGNLEVGRLVHCHMLASGSRVDLILGNALVDMYGKCGDLWMAHRCFDVMPIKNV 275
Query: 128 FTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
+WT+M+ LA G D A D F QM +I
Sbjct: 276 VSWTSMLCALAKHGSVDAARDWFEQMPERNI 306
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 22/161 (13%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT--------- 85
AR+ F ++P+ D + ++I Y +EAL L R++ I +EFT
Sbjct: 60 ARRMFDRVPDPDRFAYNSLIRAYSNSGCPQEALCLHRDVLRRGILPNEFTLPFVLKACSR 119
Query: 86 ------------VRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML-RKDKFTWTA 132
V I + +FVG AL+ G + ++R+F +M ++ +W
Sbjct: 120 ARAAEHALATHGVAIKLGYVRQVFVGNALLHSSASAGSLRDSRRLFAEMAPHRNVVSWNT 179
Query: 133 MIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
MI G A +G A +F +M R + D T+V +L C+
Sbjct: 180 MIGGCAQAGETSEACALFREMRRQGVLADVFTFVSLLLVCS 220
>gi|22293716|dbj|BAC10060.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
Length = 631
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 100/193 (51%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M KDV+SWT +VS Y G +D + F MP ++ V W AMI GY +R+
Sbjct: 263 ARSVFDRMDQKDVVSWTAMVSAYAKIGDLDTVNELFDHMPVKNLVSWNAMITGYNHNSRY 322
Query: 64 REALTLFREMQTSN-IRRDEFTTVRILTT---------------------FNNDIFVGIA 101
EAL F+ M R DE T V +++ + + +G A
Sbjct: 323 DEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNA 382
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDM+ KCGDV +A+ +F+KM + TWT MI G A +G AL +++ M R ++LD
Sbjct: 383 LIDMFAKCGDVGRAESIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLD 442
Query: 162 EVTYVGVLSACTH 174
+ ++ L+AC H
Sbjct: 443 DTVFIAALAACAH 455
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 84/185 (45%), Gaps = 14/185 (7%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M ++DV+SW +IV Y++ G A +F MPER+ V W ++ G+ R+
Sbjct: 170 ARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDM 229
Query: 64 REALTLFREMQTSN------------IRRDEFTTVRILTTFNN-DIFVGIALIDMYCKCG 110
A +F M + N + D + + D+ A++ Y K G
Sbjct: 230 VTARAVFDRMPSRNAVSWNLMISGYAMSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIG 289
Query: 111 DVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS-QMLRASIRLDEVTYVGVL 169
D++ +F M K+ +W AMI G + D AL F ML R DE T V V+
Sbjct: 290 DLDTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVV 349
Query: 170 SACTH 174
SAC
Sbjct: 350 SACAQ 354
>gi|297849216|ref|XP_002892489.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338331|gb|EFH68748.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1014
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 69/197 (35%), Positives = 102/197 (51%), Gaps = 23/197 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
MG A ++F M ++V+ W +V G+ + G V +F QM ER V W +MI +
Sbjct: 675 MGDAQKVFDEMPERNVVVWNLMVRGFCDSGDVQRGLSFFKQMSERSIVSWNSMISSLSKC 734
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRIL-----------------TTFNND-----IFV 98
R REAL LF EM DE T V +L T +N I V
Sbjct: 735 GRDREALELFCEMIDQGFDPDEATVVTMLPISASLGVLDTGKWIHSTAESNGLIKDFITV 794
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML-RAS 157
G AL+D YCK GD+E A +F KM R++ +W MI G A++G G++ +D+F M+
Sbjct: 795 GNALVDFYCKSGDLEAATAIFRKMQRRNVVSWNTMISGSAVNGKGESGIDLFDAMIEEGK 854
Query: 158 IRLDEVTYVGVLSACTH 174
+ +E T++GVL+ C++
Sbjct: 855 VAPNEATFLGVLACCSY 871
Score = 42.4 bits (98), Expect = 0.066, Method: Composition-based stats.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 22/129 (17%)
Query: 65 EALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIALI 103
++L+ F M++ I DE+T +L T F+ V I ++
Sbjct: 607 KSLSFFSSMKSRGIWADEYTYAPLLKSCSSLSDLRFGKCVHGEVIRTGFHRLGKVRIGVV 666
Query: 104 DMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEV 163
++Y G + AQ+VF +M ++ W M+ G SG L F QM SI +
Sbjct: 667 ELYTSGGRMGDAQKVFDEMPERNVVVWNLMVRGFCDSGDVQRGLSFFKQMSERSI-VSWN 725
Query: 164 TYVGVLSAC 172
+ + LS C
Sbjct: 726 SMISSLSKC 734
>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
Length = 802
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 64/196 (32%), Positives = 101/196 (51%), Gaps = 21/196 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ A IF NMK+KDV+SW TI+SGY+ +D A + F +MP ++ + W M+ GY+
Sbjct: 349 IAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHG 408
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
+AL LF M+ +++ ++T ++ F G
Sbjct: 409 GFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAG 468
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALI MY +CG V++A +F M D +W AMI L GHG AL++F +M+ I
Sbjct: 469 NALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIY 528
Query: 160 LDEVTYVGVLSACTHN 175
D ++++ VL+AC H+
Sbjct: 529 PDRISFLTVLTACNHS 544
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 63/225 (28%), Positives = 95/225 (42%), Gaps = 56/225 (24%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++ M +KD ++WTT+V GY+ RG V AR F ++ + V+W AMI GY+
Sbjct: 216 ARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMV 275
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIF-------------------------V 98
EA LFR M + DEFT +L+ N F V
Sbjct: 276 VEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAALPV 335
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKD-------------------------------K 127
AL+ +Y KCG++ A+R+F M KD +
Sbjct: 336 NNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNE 395
Query: 128 FTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+W M+ G G + AL +F++M ++ + TY G +SAC
Sbjct: 396 LSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISAC 440
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 60/218 (27%)
Query: 17 ISWTTIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
++ T++V+ Y G++ A +F +P+ RD VL A+I Y R + A+ +FR +
Sbjct: 89 VAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLL 148
Query: 75 TS-NIRRDEFTTVRILTTFNN-----------------------DIFVGIALIDMYCKCG 110
S ++R D+++ +L+ + + V AL+ +Y KC
Sbjct: 149 ASGSLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCE 208
Query: 111 DVE---KAQRVFWKMLRKDKFTWTAMIVGLA--------------------------ISG 141
+E A++V +M KD TWT M+VG ISG
Sbjct: 209 ALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISG 268
Query: 142 HGDT-----ALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+ + A ++F +M+ + LDE T+ VLSAC +
Sbjct: 269 YVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACAN 306
>gi|195647336|gb|ACG43136.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 788
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 21/193 (10%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
+A +F ++ K+ + W +++SGY G++ A F +MP R+ V W MI GY R
Sbjct: 432 YAQRVFNSLPEKNTVCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRR 491
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIA 101
F +AL F M S E T +L N +IF+G A
Sbjct: 492 FGDALNYFYAMLASGHIPGEITLSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTA 551
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L DMY K GD++ ++RVF++M K+ TWTAM+ GLA +G + ++ +F M+ I +
Sbjct: 552 LSDMYAKSGDLDSSRRVFYQMPEKNNITWTAMVQGLAENGFAEESISLFEDMIENGIAPN 611
Query: 162 EVTYVGVLSACTH 174
E T++ +L AC+H
Sbjct: 612 EHTFLAILFACSH 624
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 62/222 (27%), Positives = 95/222 (42%), Gaps = 53/222 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M K V+S+TT+V + RG V A + + + P +TAMI G++R
Sbjct: 168 ARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFFTAMISGFVRNELH 227
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT----------------------FNNDIFVGIA 101
++A +FR+M T ++R + T + ++ F I V +
Sbjct: 228 KDAFPVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVKCNLFEKSIEVHNS 287
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI--------------------------V 135
LI +Y + GD A RVF M +D +WTA++
Sbjct: 288 LITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYADLGDLYGARRVLDAMPARNEVSW 347
Query: 136 GLAISGH---GDT--ALDMFSQMLRASIRLDEVTYVGVLSAC 172
G I+ H GDT AL ++SQML R + + VLSAC
Sbjct: 348 GTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSAC 389
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 21/171 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F +M+ +DV+SWT ++ Y + G + AR+ MP R+ V W +I + +
Sbjct: 301 AHRVFDDMEVRDVVSWTALLDVYADLGDLYGARRVLDAMPARNEVSWGTLIARHEQKGDT 360
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTF---------------------NNDIFVGIAL 102
EAL L+ +M R + +L+ + ++FV +L
Sbjct: 361 AEALKLYSQMLADGCRPNISCFSSVLSACATLQDLRGGTRIHANALKMGSSTNLFVSSSL 420
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
IDMYCKC AQRVF + K+ W ++I G + +G A +F++M
Sbjct: 421 IDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYSWNGKMVEAEGLFNKM 471
>gi|345505224|gb|AEN99836.1| chlororespiratory reduction 4, partial [Lepidium virginicum]
Length = 594
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 73/228 (32%), Positives = 113/228 (49%), Gaps = 53/228 (23%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ A ++F M KD+ISW +I+ GY+ G+ + A+ + MP RD + W MIDGY+++
Sbjct: 218 LXIASKLFSEMPEKDLISWNSIIDGYVKHGRXEDAKDLYDVMPRRDVITWATMIDGYVKL 277
Query: 61 ------------------------------NRFR-EALTLFREMQT-SNIRRDEFTTVRI 88
N++ EAL LF +M+ S++ DE T V +
Sbjct: 278 GFVHQAKTLLDXIPHRDVVAYNSMMAGYVQNKYHMEALELFGDMEKESHLSPDETTLVIV 337
Query: 89 LTTF-----------------NNDIFVG----IALIDMYCKCGDVEKAQRVFWKMLRKDK 127
L+ F+G ++LIDMY KCG ++ A VF + K
Sbjct: 338 LSAIAQLGRLSKAVDMYLYVVKKQFFLGGKLWVSLIDMYSKCGSIQHAMLVFEGLENKTI 397
Query: 128 FTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
W A+I GLAI G G A +M Q+ R+SI+ D++T+ GVL+AC+H+
Sbjct: 398 DHWNAIIGGLAIHGRGGPAFNMLLQIERSSIKPDDITFTGVLNACSHS 445
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 53/206 (25%), Positives = 87/206 (42%), Gaps = 53/206 (25%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQ----------------------- 37
+GFA +IF M +D +S+ G + G ++ AR+
Sbjct: 153 LGFARQIFDRMPKRDSVSYNPXXEGXVKCGLIESARELFXLXXXEXKNXXSXXCMXSGYA 212
Query: 38 -----------YFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTV 86
F++MPE+D + W ++IDGY++ R +A L+ M RRD T
Sbjct: 213 QTSDGLXIASKLFSEMPEKDLISWNSIIDGYVKHGRXEDAKDLYDVMP----RRDVITWA 268
Query: 87 RILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTA 146
+ID Y K G V +A+ + + +D + +M+ G + + A
Sbjct: 269 --------------TMIDGYVKLGFVHQAKTLLDXIPHRDVVAYNSMMAGYVQNKYHMEA 314
Query: 147 LDMFSQMLRAS-IRLDEVTYVGVLSA 171
L++F M + S + DE T V VLSA
Sbjct: 315 LELFGDMEKESHLSPDETTLVIVLSA 340
Score = 41.2 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 21/126 (16%)
Query: 46 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL---------------- 89
D LW A++ + R AL LF M + + D+F++ +L
Sbjct: 66 DPFLWNAVMKSHSHGTDPRRALLLFCLMLENGVSVDKFSSSLVLKACSRLGFVKGGMQIH 125
Query: 90 -----TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGD 144
T +D+F+ LI +Y KCG + A+++F +M ++D ++ G G +
Sbjct: 126 GFLRKTGLWSDLFLQNCLIALYLKCGCLGFARQIFDRMPKRDSVSYNPXXEGXVKCGLIE 185
Query: 145 TALDMF 150
+A ++F
Sbjct: 186 SARELF 191
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 36/162 (22%), Positives = 67/162 (41%), Gaps = 22/162 (13%)
Query: 19 WTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 78
W +++ Y G + A F + + W A+I G R A + +++ S+I
Sbjct: 369 WVSLIDMYSKCGSIQHAMLVFEGLENKTIDHWNAIIGGLAIHGRGGPAFNMLLQIERSSI 428
Query: 79 RRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT-----WTAM 133
+ D+ T +L ++ FV L+ F M RK K + M
Sbjct: 429 KPDDITFTGVLNACSHSGFVKEGLL--------------CFELMRRKHKIEPRLQHYGCM 474
Query: 134 IVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
+ L+ SG + A ++ +M I ++V + L+AC+H+
Sbjct: 475 VDILSRSGSIELAKNLIEKM---PIEPNDVIWRTFLTACSHH 513
>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 542
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 67/195 (34%), Positives = 102/195 (52%), Gaps = 26/195 (13%)
Query: 2 GFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVN 61
G LE++ + DV++ +++ GY G++D +R F M R V W +MI GY+R
Sbjct: 187 GKKLELY----DHDVVAINSMIMGYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNG 242
Query: 62 RFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGI 100
+ EAL LF +MQ EFT V +L F ++ V
Sbjct: 243 KLMEALELFNKMQVEGFEVSEFTMVSLLNACAHLGALQHGKWVHDYIKRNHFELNVIVVT 302
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS-IR 159
A+IDMYCKCG VE A VF R+ W ++I+GLA++GH A + FS++ + ++
Sbjct: 303 AIIDMYCKCGSVENAVEVFETCPRRGLSCWNSIIIGLAMNGHEREAFEFFSKLESSKLLK 362
Query: 160 LDEVTYVGVLSACTH 174
D V+++GVL+AC H
Sbjct: 363 PDSVSFIGVLTACKH 377
Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 42/199 (21%), Positives = 86/199 (43%), Gaps = 25/199 (12%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQM----PERDYVLWTAMIDG 56
+ +A ++F M N ++ SW TI+ + A F M + Y+ + ++
Sbjct: 77 INYAYKLFVRMPNPNLYSWNTIIRAFSRSSTPQFAISLFVDMLYSQIQPQYLTYPSVFKA 136
Query: 57 YLRVNRFREALTLFREMQTSNIRRDEFTTVRI---------------------LTTFNND 95
Y ++ L + ++ D+F I L +++D
Sbjct: 137 YAQLGHAHYGAQLHGRVVKLGLQNDQFICNTIIYMYANGGLMSEARRVFDGKKLELYDHD 196
Query: 96 IFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155
+ ++I Y KCG++++++ +F M+ + +W +MI G +G AL++F++M
Sbjct: 197 VVAINSMIMGYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEALELFNKMQV 256
Query: 156 ASIRLDEVTYVGVLSACTH 174
+ E T V +L+AC H
Sbjct: 257 EGFEVSEFTMVSLLNACAH 275
>gi|449451283|ref|XP_004143391.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
gi|449519310|ref|XP_004166678.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
Length = 565
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 106/192 (55%), Gaps = 22/192 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A + F M K+V+S+TT++ GY G + AR F + PERD + W+A+I GY + +
Sbjct: 243 AEKAFDEMPEKNVVSFTTMIDGYAKAGDMLSARNLFQKAPERDIIAWSALISGYTQNGQP 302
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTF----NNDI------------------FVGIA 101
EA+ F EM + N++ D+F ++ N D+ V A
Sbjct: 303 NEAVKTFLEMSSRNVKPDKFVLTSLMLACSQLGNLDLAKWVDSYATRCSVDLRGAHVTAA 362
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDM KCG++E+A +F KM ++D ++ +++ GL+I GHGD A+ +F +ML + D
Sbjct: 363 LIDMNAKCGNMERAMYLFEKMPKRDLISYCSVMQGLSIHGHGDQAVSLFERMLGEDLTPD 422
Query: 162 EVTYVGVLSACT 173
+V + +L+AC+
Sbjct: 423 DVAFTVILTACS 434
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 18/171 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M ++V+SWT ++ GY + G + A++ F MPER+ W A+I GY+++
Sbjct: 181 ARKVFDGMSERNVVSWTAMIVGYSSIGNLVEAKRLFDLMPERNVASWNAIIGGYMKMGDV 240
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+ A F EM N+ FTT +ID Y K GD+ A+ +F K
Sbjct: 241 KSAEKAFDEMPEKNVV--SFTT----------------MIDGYAKAGDMLSARNLFQKAP 282
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+D W+A+I G +G + A+ F +M +++ D+ ++ AC+
Sbjct: 283 ERDIIAWSALISGYTQNGQPNEAVKTFLEMSSRNVKPDKFVLTSLMLACSQ 333
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 69/155 (44%), Gaps = 21/155 (13%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T +S + + + F ++ LW +++ GY +F + ++L+ M+ +
Sbjct: 65 TQFISASNSVAHISYSTSVFDRVLSPSTFLWNSLVSGYCAKLQFVDIISLYVRMKREDGA 124
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
D +T +L + DI+V +L+++Y K G ++ A++V
Sbjct: 125 PDRYTFPSLLKVCASEGKMMEGMALHGSILRCGVDEDIYVTTSLVNLYGKGGLIDCARKV 184
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
F M ++ +WTAMIVG + G+ A +F M
Sbjct: 185 FDGMSERNVVSWTAMIVGYSSIGNLVEAKRLFDLM 219
>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 61/191 (31%), Positives = 102/191 (53%), Gaps = 21/191 (10%)
Query: 5 LEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFR 64
+E+ ++ +V+ W ++ G + G + A+ F +MP+R V W MI GY + F
Sbjct: 193 MELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFI 252
Query: 65 EALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALI 103
EA+ LF+EMQ+SNI + T V +L D +G AL+
Sbjct: 253 EAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALV 312
Query: 104 DMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEV 163
DMY KCG +++A +VF + +++ TW+A+I A+ G + A+ F M +A + ++V
Sbjct: 313 DMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDV 372
Query: 164 TYVGVLSACTH 174
Y+G+LSAC+H
Sbjct: 373 AYIGILSACSH 383
Score = 48.5 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 49/212 (23%), Positives = 75/212 (35%), Gaps = 72/212 (33%)
Query: 32 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFR---EALTLFREMQTS-NIRRDEFTTVR 87
+D AR F QMPE + W ++ N EAL LF M ++ + FT
Sbjct: 68 IDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPS 127
Query: 88 ILTT---------------------FNNDIFVGIALIDMYCKC----------------- 109
+L F+ D FV L+ MY C
Sbjct: 128 VLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDF 187
Query: 110 ------------------------------GDVEKAQRVFWKMLRKDKFTWTAMIVGLAI 139
GD++ A+ +F +M ++ +W MI G A
Sbjct: 188 DGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQ 247
Query: 140 SGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+GH A+++F +M ++I + VT V VL A
Sbjct: 248 NGHFIEAINLFQEMQSSNIDPNYVTLVSVLPA 279
>gi|414870414|tpg|DAA48971.1| TPA: selenium-binding protein-like protein [Zea mays]
Length = 611
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 69/185 (37%), Positives = 101/185 (54%), Gaps = 23/185 (12%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
+D + T+++ Y NRG D AR+ F +MP RD V W +I Y R R ++AL LF EM
Sbjct: 168 RDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARNRRTKDALKLFEEM 227
Query: 74 --QTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCG 110
+ S D+ T + +L + ++ V +LI MY +CG
Sbjct: 228 RGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEEHGYGGELKVRNSLITMYLRCG 287
Query: 111 DVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLS 170
V+KA RVF +K TWTAMI GLA +G G+ A+ +F +M+R+ + DE T+ GVLS
Sbjct: 288 CVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMIRSDVAPDEQTFTGVLS 347
Query: 171 ACTHN 175
AC+H+
Sbjct: 348 ACSHS 352
>gi|226530803|ref|NP_001148047.1| LOC100281656 [Zea mays]
gi|195615502|gb|ACG29581.1| selenium-binding protein-like [Zea mays]
Length = 597
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 69/185 (37%), Positives = 101/185 (54%), Gaps = 23/185 (12%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
+D + T+++ Y NRG D AR+ F +MP RD V W +I Y R R ++AL LF EM
Sbjct: 154 RDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARNRRTKDALKLFEEM 213
Query: 74 --QTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCG 110
+ S D+ T + +L + ++ V +LI MY +CG
Sbjct: 214 RGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEEHGYGGELKVRNSLITMYLRCG 273
Query: 111 DVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLS 170
V+KA RVF +K TWTAMI GLA +G G+ A+ +F +M+R+ + DE T+ GVLS
Sbjct: 274 CVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMIRSDVAPDEQTFTGVLS 333
Query: 171 ACTHN 175
AC+H+
Sbjct: 334 ACSHS 338
>gi|302142753|emb|CBI19956.3| unnamed protein product [Vitis vinifera]
Length = 446
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 98/195 (50%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A E+F M ++ +W++++SGY +G V AR F ++P R+ V W ++I GY +
Sbjct: 111 MEAAREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQN 170
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVG 99
EAL F +MQ DE T +L+ + + FV
Sbjct: 171 GFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVL 230
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
L+DMY KCGD+ A+ +F M +++ W +MI G AI G AL+ F +M +
Sbjct: 231 NGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEG 290
Query: 160 LDEVTYVGVLSACTH 174
DE+T++ VLSAC H
Sbjct: 291 PDEITFLSVLSACAH 305
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 15/184 (8%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE 65
++F M ++ ++W ++ GY+ G A F +M R V W MIDG+ R
Sbjct: 21 KVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAVTWIEMIDGFARSGDTET 80
Query: 66 ALTLFREMQTS--NI-----------RRDEFTTVRIL--TTFNNDIFVGIALIDMYCKCG 110
A F ++ + N+ R E R + + F ++I YCK G
Sbjct: 81 ARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKG 140
Query: 111 DVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLS 170
+V++A+ +F ++ ++ W ++I G A +G + AL+ F +M DEVT VLS
Sbjct: 141 NVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLS 200
Query: 171 ACTH 174
AC+
Sbjct: 201 ACSQ 204
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+G +L+ MY KCG+V +++VF M ++ TW AMI G +G +A+ +F +M
Sbjct: 2 IGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKM 57
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 21/155 (13%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
+V Y G + AR F M R+ W +MI G+ + +EAL F M+ S+ D
Sbjct: 233 LVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPD 292
Query: 82 EFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT----WTAMIVGL 137
E T + +L+ + FV L +F +M + T + +I L
Sbjct: 293 EITFLSVLSACAHGGFVNAGL--------------EIFSRMEKYGLTTGIKHYGCLIDLL 338
Query: 138 AISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+G A D+ +M ++ ++V + +L AC
Sbjct: 339 GRAGRIKEAYDLIKRM---PVKPNDVVWGALLGAC 370
>gi|449454143|ref|XP_004144815.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
gi|449490933|ref|XP_004158752.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
Length = 484
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 101/194 (52%), Gaps = 22/194 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M ++DV+ W ++ G+ G VD F QM ER V W +I + R
Sbjct: 161 AWKMFDEMSHRDVVVWNLMIRGFCKTGNVDFGLCLFRQMSERSLVSWNTIISCLAQNRRD 220
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFN----------------------NDIFVGIA 101
EAL LF++M+ + DE T V +L + VG +
Sbjct: 221 VEALELFQQMEEHGFKPDEVTVVTMLPVCSRLGALEVGQRIHSYASSKGNLVGITTVGNS 280
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LID YCKCG++EKA +F KM K +W +I+G A++G G+ A+D+F +M + ++ +
Sbjct: 281 LIDFYCKCGNIEKAYNIFQKMTCKSVVSWNTIILGFALNGKGEFAIDLFMEMRKEYLKPN 340
Query: 162 EVTYVGVLSACTHN 175
+ T+V VL+AC H+
Sbjct: 341 DATFVAVLTACVHS 354
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 85/217 (39%), Gaps = 54/217 (24%)
Query: 9 GNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALT 68
G ++ +++ V NR + A + F+Q + L+ ++I + F ++L
Sbjct: 36 GLHQSNQILAHFISVCASFNR--IAYADRLFSQSHNPNIFLFNSIIKAHSLSVPFHQSLL 93
Query: 69 LFREMQTSNIRRDEFTTVRILTTFNN------------DIF---------VGIALIDMYC 107
LF M+ I D++T +L + N ++F + I ++++Y
Sbjct: 94 LFSSMKNHRIVPDQYTFAPLLKSCANLCEYSLGQCVISEVFRRGFYCFGSIRIGVVELYV 153
Query: 108 KCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGD----------------------- 144
C +E A ++F +M +D W MI G +G+ D
Sbjct: 154 CCEKMEDAWKMFDEMSHRDVVVWNLMIRGFCKTGNVDFGLCLFRQMSERSLVSWNTIISC 213
Query: 145 --------TALDMFSQMLRASIRLDEVTYVGVLSACT 173
AL++F QM + DEVT V +L C+
Sbjct: 214 LAQNRRDVEALELFQQMEEHGFKPDEVTVVTMLPVCS 250
>gi|255580945|ref|XP_002531291.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529124|gb|EEF31104.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 101/196 (51%), Gaps = 22/196 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ A F + KDV+SW TI++G G +++AR F QMP RD+V W ++I Y
Sbjct: 279 LDLAHRTFSALTEKDVVSWNTIIAGCAKAGDLELARTLFDQMPCRDFVSWNSLIAEYANR 338
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVG 99
F L +M N+ + T +++ D +G
Sbjct: 339 GDFIIVRDLLYDMVAENVVPNNTTMASLISAAAEIGALDQGRWAHGWVIRMQIKIDAVLG 398
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMYCKCG + A +F +++ KD WT MI G A G+G AL++F +M +A++
Sbjct: 399 SALIDMYCKCGSINNAFLIFNEIIEKDVILWTTMITGFAFHGYGSKALELFYEM-QANVT 457
Query: 160 LDEVTYVGVLSACTHN 175
+E+T+V VL+AC+H+
Sbjct: 458 PNEITFVSVLAACSHS 473
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 74/156 (47%), Gaps = 23/156 (14%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
+++ Y+ G +A + F QMP D V + MI G + EA+ L +M +++
Sbjct: 165 SLIKVYLENGLFCLAHKIFRQMPAPDVVSFNIMITGCAKQGCGLEAIQLLYDMMALDLKP 224
Query: 81 DEFTTVRILTTF-----------------------NNDIFVGIALIDMYCKCGDVEKAQR 117
DEFT + +L + ++++ +G AL+DMY KC +++ A R
Sbjct: 225 DEFTMLGLLVSCGKLGEARFGKTVHAWIERRKSITSSNLILGNALLDMYVKCQELDLAHR 284
Query: 118 VFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
F + KD +W +I G A +G + A +F QM
Sbjct: 285 TFSALTEKDVVSWNTIIAGCAKAGDLELARTLFDQM 320
>gi|357438957|ref|XP_003589755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478803|gb|AES60006.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 891
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 107/195 (54%), Gaps = 24/195 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
AL++F M +D+ SW T+V+G+I G ++ A Q F MP+++ + WTAM+ GY++
Sbjct: 251 ALKLFERMPERDMPSWNTMVTGFIQNGDLNRAEQLFHAMPQKNVITWTAMMTGYVQHGLS 310
Query: 64 REALTLFREMQTSN-IRRDEFTTVRIL---------------------TTFNNDIFVGIA 101
EAL LF +MQ ++ ++ T V +L T F +V A
Sbjct: 311 EEALKLFNKMQANDGLKPTTGTFVTVLGACSDLAGLPEGQQIHQMISKTVFQESTYVVSA 370
Query: 102 LIDMYCKCGDVEKAQRVFWKML--RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
LI+MY KCGD A+++F L D W MI A G+G+ A+++F++M +
Sbjct: 371 LINMYSKCGDFHVAKKMFDDGLSGHMDLIAWNGMIAAYAHHGYGNEAINLFNKMQELGFQ 430
Query: 160 LDEVTYVGVLSACTH 174
++VTYVG+L+AC+H
Sbjct: 431 ANDVTYVGLLTACSH 445
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 94/171 (54%), Gaps = 19/171 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M+ +DV+SWTT+V+G G+VD AR+ F +MP R+ V W AMI GY + RF
Sbjct: 189 AERLFNEMRERDVVSWTTMVAGLSKNGRVDAAREVFDKMPIRNVVSWNAMIAGYAQNGRF 248
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
EAL LF M R + ++N ++ + + GD+ +A+++F M
Sbjct: 249 DEALKLFERMPE-----------RDMPSWN-------TMVTGFIQNGDLNRAEQLFHAMP 290
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQM-LRASIRLDEVTYVGVLSACT 173
+K+ TWTAM+ G G + AL +F++M ++ T+V VL AC+
Sbjct: 291 QKNVITWTAMMTGYVQHGLSEEALKLFNKMQANDGLKPTTGTFVTVLGACS 341
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 74/140 (52%), Gaps = 18/140 (12%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
K VI WT +VSGYI +++ A + F +MP R+ V W MIDGY R R +EAL LF M
Sbjct: 106 KSVIVWTAMVSGYIKMNRIEEAERLFNEMPVRNVVSWNTMIDGYARNGRTQEALDLFGRM 165
Query: 74 QTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
N+ N + +A CG ++ A+R+F +M +D +WT M
Sbjct: 166 PERNV------------VSWNTVMTALA------HCGRIDDAERLFNEMRERDVVSWTTM 207
Query: 134 IVGLAISGHGDTALDMFSQM 153
+ GL+ +G D A ++F +M
Sbjct: 208 VAGLSKNGRVDAAREVFDKM 227
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 69/150 (46%), Gaps = 18/150 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M ++V+SW T++ GY G+ A F +MPER+ V W ++ R
Sbjct: 127 AERLFNEMPVRNVVSWNTMIDGYARNGRTQEALDLFGRMPERNVVSWNTVMTALAHCGRI 186
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+A LF EM+ D+ ++ K G V+ A+ VF KM
Sbjct: 187 DDAERLFNEMR------------------ERDVVSWTTMVAGLSKNGRVDAAREVFDKMP 228
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
++ +W AMI G A +G D AL +F +M
Sbjct: 229 IRNVVSWNAMIAGYAQNGRFDEALKLFERM 258
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 21/152 (13%)
Query: 23 VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDE 82
+S G+V+ AR+ F +M +RD LWT MI GY++ EA LF R D
Sbjct: 52 ISKLCREGKVNEARKVFDEMSKRDSCLWTTMISGYIKCGLINEARKLFD-------RPDA 104
Query: 83 FTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGH 142
+V + T A++ Y K +E+A+R+F +M ++ +W MI G A +G
Sbjct: 105 QKSVIVWT----------AMVSGYIKMNRIEEAERLFNEMPVRNVVSWNTMIDGYARNGR 154
Query: 143 GDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
ALD+F +M ++ V++ V++A H
Sbjct: 155 TQEALDLFGRMPERNV----VSWNTVMTALAH 182
>gi|7671499|emb|CAB89340.1| putative protein [Arabidopsis thaliana]
Length = 514
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 110/198 (55%), Gaps = 27/198 (13%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+ +F M KD ++W +++G + ++D AR+ F + E+D V W AMI GY+
Sbjct: 163 AMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYP 222
Query: 64 REALTLFREMQTSNIRRDEFTTVRILT----------------------TFNNDIFVGI- 100
+EAL +F+EM+ + D T + +L+ + ++ I+VG
Sbjct: 223 KEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTP 282
Query: 101 ---ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
ALIDMY KCG +++A VF + +D TW +IVGLA+ H + +++MF +M R
Sbjct: 283 IWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLK 341
Query: 158 IRLDEVTYVGVLSACTHN 175
+ +EVT++GV+ AC+H+
Sbjct: 342 VWPNEVTFIGVILACSHS 359
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 76/185 (41%), Gaps = 25/185 (13%)
Query: 9 GNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALT 68
G M N V+ + G + A + F ++P+ D + ++ G + + + ++
Sbjct: 5 GLMSNLSVVGELIYSASLSVPGALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVS 64
Query: 69 LFREMQTSNIRRDEFTTVRILTT------------FNNDI---------FVGIALIDMYC 107
L+ EM+ + D +T +L F+ + +V ALI +
Sbjct: 65 LYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHA 124
Query: 108 KCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVG 167
CGD+ A +F + K W++M G A G D A+ +F +M D+V +
Sbjct: 125 NCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYK----DQVAWNV 180
Query: 168 VLSAC 172
+++ C
Sbjct: 181 MITGC 185
>gi|413924390|gb|AFW64322.1| hypothetical protein ZEAMMB73_176484 [Zea mays]
Length = 496
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 21/193 (10%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
AL++F +M + V+++ T++SG + G VD A + F MP D V WTA+IDG+++ R
Sbjct: 125 LALQLFDSMPVRSVVTYNTMISGLMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGR 184
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIA 101
EA+ FR M + D T V +++ ++ V +
Sbjct: 185 HDEAIDCFRAMLLDGVETDYITLVAVVSACAEVGALGLGMWVHRLVLRQRLERNVRVANS 244
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMY +CG V A +VF + ++ +W +MIVG A +G A+++F +M R + D
Sbjct: 245 LIDMYARCGQVNLAAQVFRSIRKRTVVSWNSMIVGFAANGRCTDAIELFEEMRRQGFKPD 304
Query: 162 EVTYVGVLSACTH 174
VT GVL+AC+H
Sbjct: 305 AVTLTGVLTACSH 317
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/165 (20%), Positives = 69/165 (41%), Gaps = 22/165 (13%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYL 58
A ++F +++ + V+SW +++ G+ G+ A + F +M + D V T ++
Sbjct: 257 LAAQVFRSIRKRTVVSWNSMIVGFAANGRCTDAIELFEEMRRQGFKPDAVTLTGVLTACS 316
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
L + M T E+ + + ++D+ + G +++A V
Sbjct: 317 HAGLTEHGLRYYDLMTT------EYGVAARMEHYG-------CVVDLLGRAGRLDEAMHV 363
Query: 119 FWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
M +R ++ A++ G G+ LDM QM++ LD
Sbjct: 364 VETMPMRPNEVVLGALLAGCRTHGN----LDMAEQMMQHLFELDP 404
>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
Length = 547
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 64/196 (32%), Positives = 102/196 (52%), Gaps = 22/196 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ A ++F M+ KD +SW T++S + GQ+ AR+ F MP++ V WTA++ GY V
Sbjct: 168 LSLARKVFDGMREKDAVSWNTLISAHARMGQMRKARELFHSMPDKTVVSWTALVSGYTAV 227
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
F A+ +FR+MQ D+ + V +L I++
Sbjct: 228 GDFAGAVEVFRQMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNKHGMLGKIYIC 287
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR-ASI 158
AL++MY KCG +E+A ++F M KD +W+ I GLA G A+ +F M R +
Sbjct: 288 NALMEMYAKCGCIEEALQLFHGMSEKDVISWSTAIGGLAAHGRAREAVKLFEVMDREGRV 347
Query: 159 RLDEVTYVGVLSACTH 174
+ +T+VG+LSAC+H
Sbjct: 348 MPNGITFVGLLSACSH 363
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 31/105 (29%)
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDK-------------------------------FT 129
+LI+MY +CGD+ A++VF M KD +
Sbjct: 157 SLIEMYTRCGDLSLARKVFDGMREKDAVSWNTLISAHARMGQMRKARELFHSMPDKTVVS 216
Query: 130 WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
WTA++ G G A+++F QM D+V+ V VL AC
Sbjct: 217 WTALVSGYTAVGDFAGAVEVFRQMQMEGFEPDDVSIVAVLPACAQ 261
>gi|357156786|ref|XP_003577575.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 694
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 106/220 (48%), Gaps = 52/220 (23%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
IF ++ +D + W T++SGY++ G +D A F QMP +D V W MI GY + R+A
Sbjct: 344 IFDGLEVRDAVCWNTMISGYVHCGMLDEAMVLFQQMPNKDMVSWNTMIAGYAHDGQMRKA 403
Query: 67 LTLFREMQTSN--------------------------IRRD------------------- 81
+ +FR+M N +RRD
Sbjct: 404 VGIFRKMNQRNTVSWNSVISGFVQNGLCVEALQHFVLMRRDAKRADWSTYACCLSACADL 463
Query: 82 -------EFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
+F ++ + + D F G ALI Y KCG + +A++VF +M D +W A+I
Sbjct: 464 AALHVGRQFHSLLARSGYIGDSFAGNALISAYAKCGRILEARQVFDEMPAPDIVSWNALI 523
Query: 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
G A +GHG A+ +F +M +R DEVT+VGVLSAC+H
Sbjct: 524 DGYASNGHGTEAISVFREMEDNDVRPDEVTFVGVLSACSH 563
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 13/163 (7%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F + + +V+SW T+++GY G++ AR+ F ++P+R+ W M+ GYLR++
Sbjct: 217 AAGLFAGVPSPNVVSWVTLLNGYCRAGRIGEARELFDRIPDRNVAAWNVMLSGYLRLSHM 276
Query: 64 REALTLFREMQTSN-----------IRRDEFTTVR-ILTTFNNDIFVG-IALIDMYCKCG 110
EA LF EM N +R + + +L D F AL+ Y +
Sbjct: 277 EEAYKLFTEMPDKNSISWTTMISALVRGGKLQEAKDLLDKMPFDSFAAKTALMHGYLQSK 336
Query: 111 DVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
++ A+ +F + +D W MI G G D A+ +F QM
Sbjct: 337 MIDDARLIFDGLEVRDAVCWNTMISGYVHCGMLDEAMVLFQQM 379
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 18/150 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A++ F M +D++SW ++ GY+ G VD A FA +P + V W +++GY R R
Sbjct: 186 AVKFFDEMPARDMVSWNLMLEGYVRAGDVDSAAGLFAGVPSPNVVSWVTLLNGYCRAGRI 245
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
EA LF + N+ +N ++ Y + +E+A ++F +M
Sbjct: 246 GEARELFDRIPDRNV-----------AAWN-------VMLSGYLRLSHMEEAYKLFTEMP 287
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
K+ +WT MI L G A D+ +M
Sbjct: 288 DKNSISWTTMISALVRGGKLQEAKDLLDKM 317
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 13/166 (7%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A E+F + +++V +W ++SGY+ ++ A + F +MP+++ + WT MI +R
Sbjct: 245 IGEARELFDRIPDRNVAAWNVMLSGYLRLSHMEEAYKLFTEMPDKNSISWTTMISALVRG 304
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNND----IFVGIALIDMYC--------- 107
+ +EA L +M + L + D IF G+ + D C
Sbjct: 305 GKLQEAKDLLDKMPFDSFAAKTALMHGYLQSKMIDDARLIFDGLEVRDAVCWNTMISGYV 364
Query: 108 KCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
CG +++A +F +M KD +W MI G A G A+ +F +M
Sbjct: 365 HCGMLDEAMVLFQQMPNKDMVSWNTMIAGYAHDGQMRKAVGIFRKM 410
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 71/150 (47%), Gaps = 18/150 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+ + M D+ISW +++ G G++ A ++F +MP RD V W M++GY+R
Sbjct: 155 AVALLREMPAPDIISWNSVLVGLTRNGEMVRAVKFFDEMPARDMVSWNLMLEGYVRAGDV 214
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
A LF + + N + + L++ YC+ G + +A+ +F ++
Sbjct: 215 DSAAGLFAGVPSPN------------------VVSWVTLLNGYCRAGRIGEARELFDRIP 256
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
++ W M+ G H + A +F++M
Sbjct: 257 DRNVAAWNVMLSGYLRLSHMEEAYKLFTEM 286
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 18/166 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVNR 62
A ++F M +D SWT +VS Y G++ +AR +MP ++ + AMI GY + R
Sbjct: 92 ARDLFDAMPARDGFSWTLMVSCYARAGELGLARDALDRMPGDKCTACYNAMISGYAKHGR 151
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDM---------------YC 107
F +A+ L REM +I + +V + T N ++ + D Y
Sbjct: 152 FDDAVALLREMPAPDII--SWNSVLVGLTRNGEMVRAVKFFDEMPARDMVSWNLMLEGYV 209
Query: 108 KCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+ GDV+ A +F + + +W ++ G +G A ++F ++
Sbjct: 210 RAGDVDSAAGLFAGVPSPNVVSWVTLLNGYCRAGRIGEARELFDRI 255
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 76/171 (44%), Gaps = 22/171 (12%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ A +F +M +++ +S+ ++S G++ AR+ F ++P R+ V W AMI
Sbjct: 27 LAAARRLFDSMPSRNTVSYNAMLSALARHGRIADARRLFDEIPRRNTVSWNAMIAACSDH 86
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGI------------------AL 102
R +A LF M RD F+ +++ + +G+ A+
Sbjct: 87 GRVADARDLFDAMPA----RDGFSWTLMVSCYARAGELGLARDALDRMPGDKCTACYNAM 142
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
I Y K G + A + +M D +W +++VGL +G A+ F +M
Sbjct: 143 ISGYAKHGRFDDAVALLREMPAPDIISWNSVLVGLTRNGEMVRAVKFFDEM 193
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 18/124 (14%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
GQ+ AR+ F MP R+ V + AM+ R R +A LF E+ N
Sbjct: 25 GQLAAARRLFDSMPSRNTVSYNAMLSALARHGRIADARRLFDEIPRRNT----------- 73
Query: 90 TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDM 149
++N A+I G V A+ +F M +D F+WT M+ A +G A D
Sbjct: 74 VSWN-------AMIAACSDHGRVADARDLFDAMPARDGFSWTLMVSCYARAGELGLARDA 126
Query: 150 FSQM 153
+M
Sbjct: 127 LDRM 130
>gi|297844244|ref|XP_002890003.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297335845|gb|EFH66262.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 471
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 99/194 (51%), Gaps = 23/194 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M +DV+SW T++ GY N G ++ + F +M ER+ W +I GY + R
Sbjct: 106 ARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDEMLERNVFSWNGLIKGYAQNGRV 165
Query: 64 REALTLFREM-QTSNIRRDEFTTVRILTT---------------------FNN-DIFVGI 100
E L F+ M ++ ++ T +L+ +N D+ V
Sbjct: 166 SEVLGSFKRMVDEGSVFPNDATLTLVLSACAKLGAFDFGKRVHKYGENLGYNKVDVNVKN 225
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
ALIDMY KCG +E A VF + R+D +W MI GLA GHG ALD+F +M I
Sbjct: 226 ALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALDLFHEMKNCGISP 285
Query: 161 DEVTYVGVLSACTH 174
D+VT+VGVL AC H
Sbjct: 286 DKVTFVGVLCACKH 299
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 90/171 (52%), Gaps = 19/171 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M K+V+ WT++++GY+ + AR+YF PERD VLW M+ GY+ +
Sbjct: 44 ANKVFCEMVEKNVVIWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMVAGYIEMGNM 103
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
EA +LF +M R + ++N +++ Y GD+E +RVF +ML
Sbjct: 104 MEARSLFDQM-----------PCRDVMSWN-------TVLEGYANIGDMEACERVFDEML 145
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQML-RASIRLDEVTYVGVLSACT 173
++ F+W +I G A +G L F +M+ S+ ++ T VLSAC
Sbjct: 146 ERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVFPNDATLTLVLSACA 196
>gi|115471447|ref|NP_001059322.1| Os07g0260000 [Oryza sativa Japonica Group]
gi|113610858|dbj|BAF21236.1| Os07g0260000 [Oryza sativa Japonica Group]
Length = 750
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 100/193 (51%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M KDV+SWT +VS Y G +D + F MP ++ V W AMI GY +R+
Sbjct: 263 ARSVFDRMDQKDVVSWTAMVSAYAKIGDLDTVNELFDHMPVKNLVSWNAMITGYNHNSRY 322
Query: 64 REALTLFREMQTSN-IRRDEFTTVRILTT---------------------FNNDIFVGIA 101
EAL F+ M R DE T V +++ + + +G A
Sbjct: 323 DEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNA 382
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDM+ KCGDV +A+ +F+KM + TWT MI G A +G AL +++ M R ++LD
Sbjct: 383 LIDMFAKCGDVGRAESIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLD 442
Query: 162 EVTYVGVLSACTH 174
+ ++ L+AC H
Sbjct: 443 DTVFIAALAACAH 455
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 84/184 (45%), Gaps = 14/184 (7%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M ++DV+SW +IV Y++ G A +F MPER+ V W ++ G+ R+
Sbjct: 170 ARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDM 229
Query: 64 REALTLFREMQTSN------------IRRDEFTTVRILTTFNN-DIFVGIALIDMYCKCG 110
A +F M + N + D + + D+ A++ Y K G
Sbjct: 230 VTARAVFDRMPSRNAVSWNLMISGYAMSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIG 289
Query: 111 DVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS-QMLRASIRLDEVTYVGVL 169
D++ +F M K+ +W AMI G + D AL F ML R DE T V V+
Sbjct: 290 DLDTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVV 349
Query: 170 SACT 173
SAC
Sbjct: 350 SACA 353
>gi|15220741|ref|NP_176416.1| mitochondrial editing factor 9 [Arabidopsis thaliana]
gi|75097094|sp|O04590.1|PPR88_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62260, mitochondrial; Flags: Precursor
gi|2160154|gb|AAB60776.1| F19K23.18 gene product [Arabidopsis thaliana]
gi|332195821|gb|AEE33942.1| mitochondrial editing factor 9 [Arabidopsis thaliana]
Length = 656
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 100/192 (52%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M N+D SW +VSGY + G V++AR YF + PE+ V W ++I Y + +
Sbjct: 331 AFALFSEMPNRDAHSWNMMVSGYASVGNVELARHYFEKTPEKHTVSWNSIIAAYEKNKDY 390
Query: 64 REALTLFREMQTSNIRRDEFTTVRILT--------------------TFNNDIFVGIALI 103
+EA+ LF M + D T +L+ T D+ V ALI
Sbjct: 391 KEAVDLFIRMNIEGEKPDPHTLTSLLSASTGLVNLRLGMQMHQIVVKTVIPDVPVHNALI 450
Query: 104 DMYCKCGDVEKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
MY +CG++ +++R+F +M L+++ TW AMI G A G+ AL++F M I
Sbjct: 451 TMYSRCGEIMESRRIFDEMKLKREVITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSH 510
Query: 163 VTYVGVLSACTH 174
+T+V VL+AC H
Sbjct: 511 ITFVSVLNACAH 522
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 83/153 (54%), Gaps = 21/153 (13%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +IF ++ ++ ++W T++SGY+ R +++ AR+ F MP+RD V W MI GY+
Sbjct: 59 ARDIFEKLEARNTVTWNTMISGYVKRREMNQARKLFDVMPKRDVVTWNTMISGYVSCGGI 118
Query: 64 R---EALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
R EA LF EM + RD F+ +++ + + +G AL+ +F
Sbjct: 119 RFLEEARKLFDEMPS----RDSFSWNTMISGYAKNRRIGEALL--------------LFE 160
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
KM ++ +W+AMI G +G D+A+ +F +M
Sbjct: 161 KMPERNAVSWSAMITGFCQNGEVDSAVVLFRKM 193
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 73/160 (45%), Gaps = 18/160 (11%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
K+V+SW +++ Y+ G V AR F QM +RD + W MIDGY+ V+R +A LF EM
Sbjct: 279 KNVVSWNSMIKAYLKVGDVVSARLLFDQMKDRDTISWNTMIDGYVHVSRMEDAFALFSEM 338
Query: 74 QTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
N D ++ Y G+VE A+ F K K +W ++
Sbjct: 339 P------------------NRDAHSWNMMVSGYASVGNVELARHYFEKTPEKHTVSWNSI 380
Query: 134 IVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
I + A+D+F +M + D T +LSA T
Sbjct: 381 IAAYEKNKDYKEAVDLFIRMNIEGEKPDPHTLTSLLSAST 420
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 21/140 (15%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQV---DIARQYFAQMPERDYVLWTAMIDGY 57
M A ++F M +DV++W T++SGY++ G + + AR+ F +MP RD W MI GY
Sbjct: 87 MNQARKLFDVMPKRDVVTWNTMISGYVSCGGIRFLEEARKLFDEMPSRDSFSWNTMISGY 146
Query: 58 LRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQR 117
+ R EAL LF +M N A+I +C+ G+V+ A
Sbjct: 147 AKNRRIGEALLLFEKMPERN------------------AVSWSAMITGFCQNGEVDSAVV 188
Query: 118 VFWKMLRKDKFTWTAMIVGL 137
+F KM KD A++ GL
Sbjct: 189 LFRKMPVKDSSPLCALVAGL 208
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 77/187 (41%), Gaps = 34/187 (18%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G AL +F M ++ +SW+ +++G+ G+VD A F +MP +D A++ G ++
Sbjct: 152 IGEALLLFEKMPERNAVSWSAMITGFCQNGEVDSAVVLFRKMPVKDSSPLCALVAGLIKN 211
Query: 61 NRFREA-----------------LTLFREMQTSNIRRDEFTTVRIL-------------- 89
R EA + + + +R + R L
Sbjct: 212 ERLSEAAWVLGQYGSLVSGREDLVYAYNTLIVGYGQRGQVEAARCLFDQIPDLCGDDHGG 271
Query: 90 ---TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTA 146
F ++ ++I Y K GDV A+ +F +M +D +W MI G + A
Sbjct: 272 EFRERFCKNVVSWNSMIKAYLKVGDVVSARLLFDQMKDRDTISWNTMIDGYVHVSRMEDA 331
Query: 147 LDMFSQM 153
+FS+M
Sbjct: 332 FALFSEM 338
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 26/135 (19%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
I SGYI AR F ++ R+ V W MI GY++ +A LF M +RD
Sbjct: 51 IRSGYIAE-----ARDIFEKLEARNTVTWNTMISGYVKRREMNQARKLFDVMP----KRD 101
Query: 82 EFTTVRILTTFNNDIFVGIALIDMYCKCGDV---EKAQRVFWKMLRKDKFTWTAMIVGLA 138
+ T+N +I Y CG + E+A+++F +M +D F+W MI G A
Sbjct: 102 -------VVTWN-------TMISGYVSCGGIRFLEEARKLFDEMPSRDSFSWNTMISGYA 147
Query: 139 ISGHGDTALDMFSQM 153
+ AL +F +M
Sbjct: 148 KNRRIGEALLLFEKM 162
>gi|297828247|ref|XP_002882006.1| hypothetical protein ARALYDRAFT_903976 [Arabidopsis lyrata subsp.
lyrata]
gi|297327845|gb|EFH58265.1| hypothetical protein ARALYDRAFT_903976 [Arabidopsis lyrata subsp.
lyrata]
Length = 412
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 110/226 (48%), Gaps = 53/226 (23%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A ++F M KD+ISW +++ GY+ G+++ A+ F MP RD V MIDGY ++
Sbjct: 38 IASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTCATMIDGYAKLGF 97
Query: 63 FREALTLFREM--------------------------------QTSNIRRDEFTTVRILT 90
+A TLF +M + S++ DE T V IL+
Sbjct: 98 VHQAKTLFDQMPLRDVVAYNSMMAGYVQNKCHMEALEIFNDMEKESHLSPDETTLVIILS 157
Query: 91 TFNN--------DIFV-------------GIALIDMYCKCGDVEKAQRVFWKMLRKDKFT 129
D+ + G+ALIDMY KCG ++ A VF + K
Sbjct: 158 AIAQLGRLSKATDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDH 217
Query: 130 WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
W AMI GLA+ G G++A +M Q+ R SI D++T+VGVL+AC+H+
Sbjct: 218 WNAMIGGLAVHGLGESAFNMLLQIERLSIIPDDITFVGVLNACSHS 263
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 72/144 (50%), Gaps = 19/144 (13%)
Query: 29 RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRI 88
R IA + FA+MPE+D + W +MIDGY++ R +A LF M RRD T
Sbjct: 33 RCNCSIASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMP----RRDVVTCA-- 86
Query: 89 LTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALD 148
+ID Y K G V +A+ +F +M +D + +M+ G + AL+
Sbjct: 87 ------------TMIDGYAKLGFVHQAKTLFDQMPLRDVVAYNSMMAGYVQNKCHMEALE 134
Query: 149 MFSQMLRAS-IRLDEVTYVGVLSA 171
+F+ M + S + DE T V +LSA
Sbjct: 135 IFNDMEKESHLSPDETTLVIILSA 158
>gi|334188487|ref|NP_200728.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170817|sp|Q9FIF7.1|PP435_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic; Flags: Precursor
gi|9759241|dbj|BAB09765.1| unnamed protein product [Arabidopsis thaliana]
gi|332009773|gb|AED97156.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 544
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 105/192 (54%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M ++D ++ T +++ Y G + A + F + +D V WTAMIDG +R
Sbjct: 177 AKKMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEM 236
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
+AL LFREMQ N+ +EFT V +L+ ++ FVG AL
Sbjct: 237 NKALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNAL 296
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I+MY +CGD+ +A+RVF M KD ++ MI GLA+ G A++ F M+ R ++
Sbjct: 297 INMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQ 356
Query: 163 VTYVGVLSACTH 174
VT V +L+AC+H
Sbjct: 357 VTLVALLNACSH 368
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 82/191 (42%), Gaps = 48/191 (25%)
Query: 31 QVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT 90
VD A F+ + + L+TAMIDG++ R + ++L+ M +++ D + +L
Sbjct: 76 SVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLK 135
Query: 91 T-----------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--------- 124
F + VG+ ++++Y K G++ A+++F +M
Sbjct: 136 ACDLKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVM 195
Query: 125 ----------------------KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
KD WTAMI GL + + AL++F +M ++ +E
Sbjct: 196 INCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANE 255
Query: 163 VTYVGVLSACT 173
T V VLSAC+
Sbjct: 256 FTAVCVLSACS 266
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 58 LRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN-DIFVGIALIDMYCKCGDVEKAQ 116
LR++R + +++ R + NI +I+ TF++ D FV LI + V+ A
Sbjct: 24 LRLSRRKTLISVLRSCK--NIAHVPSIHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAY 81
Query: 117 RVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
VF + + + +TAMI G SG + ++ +M+ S+ D VL AC
Sbjct: 82 DVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKAC 137
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 68/171 (39%), Gaps = 26/171 (15%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+++ Y G ++ AR+ F M ++D + + MI G EA+ FR+M R
Sbjct: 294 NALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFR 353
Query: 80 RDEFTTVRILTTFNNDIFVGIAL----------------------IDMYCKCGDVEKAQR 117
++ T V +L ++ + I L +D+ + G +E+A R
Sbjct: 354 PNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYR 413
Query: 118 VFWKM-LRKDKFTWTAMIVGLAISGHGDTAL-DMFSQMLRASIRLDEVTYV 166
+ + D ++ I HG+ L + ++ L S D TYV
Sbjct: 414 FIENIPIEPDHIMLGTLLSACKI--HGNMELGEKIAKRLFESENPDSGTYV 462
>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
Length = 986
Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 95/176 (53%), Gaps = 21/176 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+VS ++N G + A+ F MP+RD V W +I G+++ + + A F+ MQ S I+
Sbjct: 553 NALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIK 612
Query: 80 RDEFTTVRIL---------------------TTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
D+ T +L F+ D+ VG LI MY KCG +E A +V
Sbjct: 613 PDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQV 672
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
F K+ +K+ ++WT+MI G A G G AL++F QM + ++ D +T+VG LSAC H
Sbjct: 673 FHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAH 728
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 93/180 (51%), Gaps = 21/180 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ T +++ +I G + A + F +P RD V WT+MI G R RF++A LF+ M+
Sbjct: 245 DLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRME 304
Query: 75 TSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVE 113
++ D+ V +L N+ +I+VG A++ MY KCG +E
Sbjct: 305 EEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSME 364
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
A VF + ++ +WTAMI G A G D A F++M+ + I + VT++ +L AC+
Sbjct: 365 DALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACS 424
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 98/199 (49%), Gaps = 25/199 (12%)
Query: 1 MGFALEIFGNMK----NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDG 56
+G I+ ++K D+ T+++ Y G A+Q F M E+D W ++ G
Sbjct: 126 LGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGG 185
Query: 57 YLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNND 95
Y++ + EA L +M +++ D+ T V +L ++ D
Sbjct: 186 YVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTD 245
Query: 96 IFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155
+FVG ALI+M+ KCGD+ A +VF + +D TWT+MI GLA G A ++F +M
Sbjct: 246 LFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEE 305
Query: 156 ASIRLDEVTYVGVLSACTH 174
++ D+V +V +L AC H
Sbjct: 306 EGVQPDKVAFVSLLRACNH 324
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 21/175 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T ++S Y G + A + F ++ +++ V W AMI Y++ ++ AL F+ + I+
Sbjct: 452 TALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIK 511
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
+ T IL +D+ V AL+ M+ CGD+ A+ +
Sbjct: 512 PNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNL 571
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
F M ++D +W +I G G A D F M + I+ D++T+ G+L+AC
Sbjct: 572 FNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACA 626
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 12/170 (7%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
ALE+F +K ++V+SWT +++G+ G++D A ++ + MI+ + NR
Sbjct: 366 ALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEA-----------FLFFNKMIESGIEPNRV 414
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT-FNNDIFVGIALIDMYCKCGDVEKAQRVFWKM 122
L S ++R + I+ + +D V AL+ MY KCG ++ A RVF K+
Sbjct: 415 TFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKI 474
Query: 123 LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+++ W AMI D AL F +L+ I+ + T+ +L+ C
Sbjct: 475 SKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVC 524
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV+ T ++S Y G ++ A Q F ++P+++ WT+MI GY + R +EAL LF +MQ
Sbjct: 649 DVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQ 708
Query: 75 TSNIRRDEFTTVRILTT 91
++ D T V L+
Sbjct: 709 QEGVKPDWITFVGALSA 725
>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 684
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 67/194 (34%), Positives = 103/194 (53%), Gaps = 22/194 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +DV SWT+++ GY G++D A + F MP R+ V W MI G+L R+
Sbjct: 232 ARKVFNQMSERDVFSWTSLLGGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRY 291
Query: 64 REALTLFREMQTSN-IRRDEFTTVRILTT---------------------FNNDIFVGIA 101
EALT F M + + +E V +L+ + A
Sbjct: 292 PEALTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTA 351
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMY KCG ++ A RVF + ++D ++T+MI GL+ G G AL +F QML ++ +
Sbjct: 352 LIDMYAKCGRIDCASRVFNGICKRDVLSFTSMISGLSYHGLGKDALRVFYQMLDENVMPN 411
Query: 162 EVTYVGVLSACTHN 175
E+T +GVL+ C+H+
Sbjct: 412 EITILGVLNGCSHS 425
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 25/136 (18%)
Query: 43 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN----IRRDEFTTVRILTT------- 91
P LW MI Y ++ +E + LF M T + + DE+T ++T+
Sbjct: 135 PSPPIKLWNVMIRTYSKIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITSCSHQISL 194
Query: 92 --------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGL 137
F ++++VG ++I+M +E A++VF +M +D F+WT+++ G
Sbjct: 195 IYGEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGY 254
Query: 138 AISGHGDTALDMFSQM 153
A G D A ++F+ M
Sbjct: 255 AKHGEMDRACELFNMM 270
>gi|297828245|ref|XP_002882005.1| hypothetical protein ARALYDRAFT_903974 [Arabidopsis lyrata subsp.
lyrata]
gi|297327844|gb|EFH58264.1| hypothetical protein ARALYDRAFT_903974 [Arabidopsis lyrata subsp.
lyrata]
Length = 408
Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 110/225 (48%), Gaps = 53/225 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M KD+ISW +++ GY+ G+++ A+ F MP RD V MIDGY ++
Sbjct: 35 ASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTCATMIDGYAKLGFV 94
Query: 64 REALTLFREM--------------------------------QTSNIRRDEFTTVRILTT 91
+A TLF +M + S++ DE T V IL+
Sbjct: 95 HQAKTLFDQMPLRDVVAYNSMMAGYVQNKCHMEALEIFNDMEKESHLSPDETTLVIILSA 154
Query: 92 FNN--------DIFV-------------GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTW 130
D+ + G+ALIDMY KCG ++ A VF + K W
Sbjct: 155 IAQLGRLSKATDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHW 214
Query: 131 TAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
AMI GLA+ G G++A +M Q+ R SI D++T+VGVL+AC+H+
Sbjct: 215 NAMIGGLAVHGLGESAFNMLLQIERLSIIPDDITFVGVLNACSHS 259
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 72/144 (50%), Gaps = 19/144 (13%)
Query: 29 RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRI 88
R IA + FA+MPE+D + W +MIDGY++ R +A LF M RRD T
Sbjct: 29 RCNCSIASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMP----RRDVVTCA-- 82
Query: 89 LTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALD 148
+ID Y K G V +A+ +F +M +D + +M+ G + AL+
Sbjct: 83 ------------TMIDGYAKLGFVHQAKTLFDQMPLRDVVAYNSMMAGYVQNKCHMEALE 130
Query: 149 MFSQMLRAS-IRLDEVTYVGVLSA 171
+F+ M + S + DE T V +LSA
Sbjct: 131 IFNDMEKESHLSPDETTLVIILSA 154
>gi|326498517|dbj|BAJ98686.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 647
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 68/193 (35%), Positives = 105/193 (54%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F + D SW ++++GY+ G V+ A F+ MP++D V W+ MI G ++ N+
Sbjct: 320 ARRLFDSGDCLDQFSWNSMIAGYLKNGHVENAMTLFSAMPDKDNVSWSTMISGCVQNNQS 379
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
ALT+F M+ +R DE T V +++ N + +G +L
Sbjct: 380 SHALTVFDNMRAQGVRPDEVTIVSVISACTNLSALEKGKSVHDYVRQNKCYITLVLGTSL 439
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL-D 161
IDMY KCG +E A VF M K W A+IVGLA++G +L++FS+M +S + +
Sbjct: 440 IDMYMKCGYLEAAMDVFNIMEEKGAPCWNAVIVGLAMNGLVTKSLEIFSEMEASSTAIPN 499
Query: 162 EVTYVGVLSACTH 174
E+T+ GVLSAC H
Sbjct: 500 EITFTGVLSACRH 512
Score = 82.0 bits (201), Expect = 9e-14, Method: Composition-based stats.
Identities = 65/223 (29%), Positives = 98/223 (43%), Gaps = 52/223 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+ +F M ++ + +++VS + RG V+ AR F + RD WTAMI + R + F
Sbjct: 188 AVGVFARMPKRNATAVSSMVSLFGRRGMVEEARGVFDEAECRDIFTWTAMISCFERNDMF 247
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTF-------NNDIFVGI--------------AL 102
EAL +F M+ DE V ++ N ++ G+ L
Sbjct: 248 AEALHMFSCMRREMWPVDEALMVSVVAACAQSEVIRNGELCHGLVIRAGLCSLLNIQNVL 307
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM--------- 153
I MY C DV A+R+F D+F+W +MI G +GH + A+ +FS M
Sbjct: 308 IHMYSCCLDVVAARRLFDSGDCLDQFSWNSMIAGYLKNGHVENAMTLFSAMPDKDNVSWS 367
Query: 154 ---------------------LRAS-IRLDEVTYVGVLSACTH 174
+RA +R DEVT V V+SACT+
Sbjct: 368 TMISGCVQNNQSSHALTVFDNMRAQGVRPDEVTIVSVISACTN 410
Score = 38.5 bits (88), Expect = 0.96, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 71 REMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTW 130
R++Q+ IR F +D+++ AL+ MY CG + A+RVF D +W
Sbjct: 123 RQVQSHAIRHG----------FGDDLYLRNALMHMYSVCGCLWDARRVFDAGPVWDAVSW 172
Query: 131 TAMIVGLAISGHGDTALDMFSQM 153
++ +G D A+ +F++M
Sbjct: 173 NTILAAYVHAGDVDQAVGVFARM 195
>gi|222636781|gb|EEE66913.1| hypothetical protein OsJ_23761 [Oryza sativa Japonica Group]
Length = 595
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 100/193 (51%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M KDV+SWT +VS Y G +D + F MP ++ V W AMI GY +R+
Sbjct: 142 ARSVFDRMDQKDVVSWTAMVSAYAKIGDLDTVNELFDHMPVKNLVSWNAMITGYNHNSRY 201
Query: 64 REALTLFREMQTSN-IRRDEFTTVRILTT---------------------FNNDIFVGIA 101
EAL F+ M R DE T V +++ + + +G A
Sbjct: 202 DEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNA 261
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDM+ KCGDV +A+ +F+KM + TWT MI G A +G AL +++ M R ++LD
Sbjct: 262 LIDMFAKCGDVGRAESIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLD 321
Query: 162 EVTYVGVLSACTH 174
+ ++ L+AC H
Sbjct: 322 DTVFIAALAACAH 334
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 64/164 (39%), Gaps = 25/164 (15%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFN- 93
ARQ F +M +RD V W +++ Y+ A+ F M N+ ++N
Sbjct: 69 ARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGNAVSWNL 128
Query: 94 -----------------------NDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTW 130
D+ A++ Y K GD++ +F M K+ +W
Sbjct: 129 MISGYAMSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIGDLDTVNELFDHMPVKNLVSW 188
Query: 131 TAMIVGLAISGHGDTALDMFS-QMLRASIRLDEVTYVGVLSACT 173
AMI G + D AL F ML R DE T V V+SAC
Sbjct: 189 NAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACA 232
>gi|42567862|ref|NP_197034.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635759|sp|Q9LXF2.2|PP385_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g15300
gi|332004762|gb|AED92145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 548
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 110/198 (55%), Gaps = 27/198 (13%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+ +F M KD ++W +++G + ++D AR+ F + E+D V W AMI GY+
Sbjct: 197 AMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYP 256
Query: 64 REALTLFREMQTSNIRRDEFTTVRILT----------------------TFNNDIFVGI- 100
+EAL +F+EM+ + D T + +L+ + ++ I+VG
Sbjct: 257 KEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTP 316
Query: 101 ---ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
ALIDMY KCG +++A VF + +D TW +IVGLA+ H + +++MF +M R
Sbjct: 317 IWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLK 375
Query: 158 IRLDEVTYVGVLSACTHN 175
+ +EVT++GV+ AC+H+
Sbjct: 376 VWPNEVTFIGVILACSHS 393
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 79/190 (41%), Gaps = 25/190 (13%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
++ + G M N V+ + G + A + F ++P+ D + ++ G + +
Sbjct: 34 SMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKP 93
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT------------FNNDI---------FVGIAL 102
+ ++L+ EM+ + D +T +L F+ + +V AL
Sbjct: 94 EKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNAL 153
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I + CGD+ A +F + K W++M G A G D A+ +F +M D+
Sbjct: 154 ILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYK----DQ 209
Query: 163 VTYVGVLSAC 172
V + +++ C
Sbjct: 210 VAWNVMITGC 219
>gi|356571125|ref|XP_003553731.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g05240-like [Glycine max]
Length = 552
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 102/191 (53%), Gaps = 22/191 (11%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE 65
+ F + N ++I T I+ Y G IAR F +MP+R+ V W +MI+ Y + R +E
Sbjct: 226 DPFMSTSNSNIILATAILEMYAKCGSFKIARDLFNKMPQRNIVSWNSMINAYNQYERHKE 285
Query: 66 ALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIALID 104
AL LF +M TS I D+ T + +L T DI + AL+D
Sbjct: 286 ALDLFFDMWTSGIYPDKATFLSVLSVCAHLCALALGQTVHAYLXKTGIGTDISLATALLD 345
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR-ASIRLDEV 163
MY K G + AQ++F + ++D WT+MI GLA+ G G+ AL MF M +S+ D +
Sbjct: 346 MYAKTGGLGSAQKIFSSLQKRDVVMWTSMINGLAMHGDGNEALGMFQTMHEDSSLVPDHI 405
Query: 164 TYVGVLSACTH 174
TY+GVL AC+H
Sbjct: 406 TYIGVLFACSH 416
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 28/188 (14%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D + T ++ Y++ + + F +P + V WT +I GY+ N+ EAL +F++M
Sbjct: 127 DAYTATGLLHMYVSCADMKSGLKVFDNIPIWNVVAWTCLIAGYVNNNQPYEALKVFKDMS 186
Query: 75 TSNIRRDEFTTVRIL----------------------------TTFNNDIFVGIALIDMY 106
+ +E T V L +T N++I + A+++MY
Sbjct: 187 HCGVEPNEITMVNALIXCARSRDFDTGQWVHQHIRKAGYDPFMSTSNSNIILATAILEMY 246
Query: 107 CKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYV 166
KCG + A+ +F KM +++ +W +MI ALD+F M + I D+ T++
Sbjct: 247 AKCGSFKIARDLFNKMPQRNIVSWNSMINAYNQYERHKEALDLFFDMWTSGIYPDKATFL 306
Query: 167 GVLSACTH 174
VLS C H
Sbjct: 307 SVLSVCAH 314
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 66/165 (40%), Gaps = 21/165 (12%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G ++ A F Q+ +W +MI G++ + R ++ L+R++ + D FT +L
Sbjct: 41 GDINNADLVFRQIDAPSVYIWNSMIRGFVNNHNPRMSMLLYRQLIENGYSPDHFTFPFVL 100
Query: 90 ---------------------TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
+ F D + L+ MY C D++ +VF + +
Sbjct: 101 KACCAIADQDCGKCIHCCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPIWNVV 160
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
WT +I G + AL +F M + +E+T V L C
Sbjct: 161 AWTCLIAGYVNNNQPYEALKVFKDMSHCGVEPNEITMVNALIXCA 205
>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 741
Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats.
Identities = 62/192 (32%), Positives = 106/192 (55%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F ++DV+S+T ++ GY +RG ++ A++ F ++P +D V W AMI GY +
Sbjct: 188 AHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNY 247
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
+EAL LF++M +N+R DE T V +++ F +++ + AL
Sbjct: 248 KEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNAL 307
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
ID+Y KCG++E A +F ++ KD +W +I G AL +F +MLR+ ++
Sbjct: 308 IDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPND 367
Query: 163 VTYVGVLSACTH 174
VT + +L AC H
Sbjct: 368 VTMLSILPACAH 379
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 60/177 (33%), Positives = 95/177 (53%), Gaps = 23/177 (12%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
++ Y G+++ A F ++P +D + W +I GY +N ++EAL LF+EM S +
Sbjct: 307 LIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPN 366
Query: 82 EFTTVRILTT-----------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
+ T + IL N + +LIDMY KCGD+E A +V
Sbjct: 367 DVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQV 426
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
F +L K +W AMI G A+ G D + D+FS+M + I+ D++T+VG+LSAC+H+
Sbjct: 427 FNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHS 483
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 49/161 (30%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ T+++S Y+ G+++ A + F + P RD V +T
Sbjct: 168 DLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYT----------------------- 204
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
ALI Y G +E AQ++F ++ KD +W AMI
Sbjct: 205 --------------------------ALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMI 238
Query: 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
G A +G+ AL++F M++ ++R DE T V V+SAC +
Sbjct: 239 SGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQS 279
>gi|15229345|ref|NP_187126.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207287|sp|Q9SR01.1|PP212_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04750, mitochondrial; Flags: Precursor
gi|6175175|gb|AAF04901.1|AC011437_16 hypothetical protein [Arabidopsis thaliana]
gi|332640610|gb|AEE74131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 661
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 101/197 (51%), Gaps = 23/197 (11%)
Query: 2 GFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVN 61
G A F MK KD+ SW T+V G++ G ++ A+ F QMP+RD V W +++ GY +
Sbjct: 286 GLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKG 345
Query: 62 -RFREALTLFREMQ-TSNIRRDEFTTVRILTTFNN---------------------DIFV 98
R LF EM ++ D T V +++ N D F+
Sbjct: 346 CDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLVIRLQLKGDAFL 405
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
ALIDMYCKCG +E+A VF KD WT+MI GLA G+G AL +F +M +
Sbjct: 406 SSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQQALQLFGRMQEEGV 465
Query: 159 RLDEVTYVGVLSACTHN 175
+ VT + VL+AC+H+
Sbjct: 466 TPNNVTLLAVLTACSHS 482
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 23/160 (14%)
Query: 19 WTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 78
W ++V Y+ G +A + FA+MP D + MI GY + EAL L+ +M + I
Sbjct: 169 WNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGI 228
Query: 79 RRDEFTTVRIL-----------------------TTFNNDIFVGIALIDMYCKCGDVEKA 115
DE+T + +L +++++ + AL+DMY KC + A
Sbjct: 229 EPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKESGLA 288
Query: 116 QRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155
+R F M +KD +W M+VG G + A +F QM +
Sbjct: 289 KRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPK 328
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
+L+ Y + G+ A++VF +M D ++ MIVG A G AL ++ +M+ I
Sbjct: 171 SLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGIEP 230
Query: 161 DEVTYVGVLSACTH 174
DE T + +L C H
Sbjct: 231 DEYTVLSLLVCCGH 244
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 24/144 (16%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D + ++ Y G ++ A F E+D LWT+MI G ++AL LF MQ
Sbjct: 402 DAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQQALQLFGRMQ 461
Query: 75 TSNIRRDEFTTVRILTTFNNDIFV--GI--------------------ALIDMYCKCGDV 112
+ + T + +LT ++ V G+ +L+D+ C+ G V
Sbjct: 462 EEGVTPNNVTLLAVLTACSHSGLVEEGLHVFNHMKDKFGFDPETEHYGSLVDLLCRAGRV 521
Query: 113 EKAQRVFWK--MLRKDKFTWTAMI 134
E+A+ + K +R + W +++
Sbjct: 522 EEAKDIVQKKMPMRPSQSMWGSIL 545
>gi|15234044|ref|NP_193619.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098703|sp|O49399.2|PP321_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18840
gi|5738365|emb|CAA16741.2| putative protein [Arabidopsis thaliana]
gi|7268678|emb|CAB78886.1| putative protein [Arabidopsis thaliana]
gi|332658697|gb|AEE84097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 545
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 102/193 (52%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M+ ++V SW ++SGY G V A++ F MP RD V W AM+ Y V +
Sbjct: 225 ARALFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCY 284
Query: 64 REALTLFREM-QTSNIRRDEFTTVRILTTFNN---------------------DIFVGIA 101
E L +F +M S + D FT V +L+ + + F+ A
Sbjct: 285 NEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATA 344
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+DMY KCG ++KA VF ++D TW ++I L++ G G AL++FS+M+ + +
Sbjct: 345 LVDMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPN 404
Query: 162 EVTYVGVLSACTH 174
+T++GVLSAC H
Sbjct: 405 GITFIGVLSACNH 417
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 75/160 (46%), Gaps = 19/160 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV T+V+ Y G +IAR+ +MP RD V W +++ YL EA LF EM+
Sbjct: 174 DVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFDEME 233
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
N+ F +I Y G V++A+ VF M +D +W AM+
Sbjct: 234 ERNVESWNF------------------MISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMV 275
Query: 135 VGLAISGHGDTALDMFSQMLRASI-RLDEVTYVGVLSACT 173
A G + L++F++ML S + D T V VLSAC
Sbjct: 276 TAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACA 315
Score = 38.9 bits (89), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 21/124 (16%)
Query: 51 TAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL--------------------- 89
++I Y + ALT+FREM + D+++ +L
Sbjct: 109 NSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIK 168
Query: 90 TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDM 149
+ D+FV L+++Y + G E A++V +M +D +W +++ G D A +
Sbjct: 169 SGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARAL 228
Query: 150 FSQM 153
F +M
Sbjct: 229 FDEM 232
>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 609
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 102/194 (52%), Gaps = 23/194 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F N+D+ SW ++SGY G++D ARQ F +MPE+D V WT MI G L+V F
Sbjct: 156 ARKVFDWSPNRDMYSWNIMLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYF 215
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVG---------------------IAL 102
EAL +F M + +E+T L N + + L
Sbjct: 216 MEALDIFHNMLAKGMSPNEYTLASSLAACANLVALDQGRWMHVYIKKNNIQMNERLLAGL 275
Query: 103 IDMYCKCGDVEKAQRVF--WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
IDMY KCG++E A ++F L++ + W AMI G A+ G A+++F QM +
Sbjct: 276 IDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEKVSP 335
Query: 161 DEVTYVGVLSACTH 174
++VT+V +L+AC+H
Sbjct: 336 NKVTFVALLNACSH 349
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 31/114 (27%)
Query: 92 FNNDIFVGIALIDM-------------------------------YCKCGDVEKAQRVFW 120
N++FV ALI M Y + G +++A+++F
Sbjct: 133 LENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGYARLGKMDEARQLFD 192
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+M KD +WT MI G G+ ALD+F ML + +E T L+AC +
Sbjct: 193 EMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASSLAACAN 246
>gi|449518887|ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g35030, mitochondrial-like [Cucumis sativus]
Length = 649
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 107/195 (54%), Gaps = 24/195 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +++ SW T+++G+I G+++ A +F +M ++ V WTA+I G+++ R
Sbjct: 272 AFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRS 331
Query: 64 REALTLFREMQTSN-IRRDEFTTVRIL---------------------TTFNNDIFVGIA 101
EAL +F EMQ +N ++ +E T V +L T + V A
Sbjct: 332 EEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSA 391
Query: 102 LIDMYCKCGDVEKAQRVF--WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
LI+MY KCG++E A+++F + +D +W MI A GHG A+ +F +M R
Sbjct: 392 LINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFR 451
Query: 160 LDEVTYVGVLSACTH 174
D VTY+ +LSAC+H
Sbjct: 452 PDNVTYIALLSACSH 466
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 94/171 (54%), Gaps = 19/171 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F M +DVISWTT+V+G G++D AR F +MP R+ V W MI GY + R
Sbjct: 210 AQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRL 269
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
EA LF +M R L+++N +I + + G +E+A F+KM
Sbjct: 270 DEAFKLFEQMPE-----------RELSSWN-------TMITGFIQNGKLERAVDFFYKMS 311
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRA-SIRLDEVTYVGVLSACT 173
K+ TWTA+I G G + AL +FS+M A +++ +E T+V VL AC+
Sbjct: 312 NKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACS 362
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 28/174 (16%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE-RDYVLWTAMIDGYLR 59
+G A ++F M ++DV+SWT +++GYI G ++ A+ F + ++ V WTA++ GY+R
Sbjct: 82 IGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFDRNDAIKNVVTWTALVSGYVR 141
Query: 60 VNRFREALTLFREMQTSNI-----------RRD---------EFTTVRILTTFNNDIFVG 99
NR EA LF M N+ R+ E R + ++N
Sbjct: 142 WNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEXMPERNVVSWN------ 195
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+I + + V++AQ +F +M +D +WT M+ GL+ +G D A +F +M
Sbjct: 196 -TVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKM 248
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 70/146 (47%), Gaps = 17/146 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
N +V +++ G++ ARQ F +MP+RD V WTA+I GY++ EA TLF
Sbjct: 63 NSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFD- 121
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA 132
R D V T AL+ Y + +E+A+R+F M K+ +W
Sbjct: 122 ------RNDAIKNVVTWT----------ALVSGYVRWNRIEEARRLFDAMPVKNVISWNT 165
Query: 133 MIVGLAISGHGDTALDMFSQMLRASI 158
MI G A G D ALD+F M ++
Sbjct: 166 MIEGYARKGWIDQALDLFEXMPERNV 191
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 27/155 (17%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYF--AQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
DV+S +++ Y G++++AR+ F + RD V W MI Y +A++LF E
Sbjct: 387 DVVS--ALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDE 444
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFVG----------------------IALIDMYCKCG 110
MQ R D T + +L+ ++ V L+D++ + G
Sbjct: 445 MQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKLREDHFTCLVDLFGRAG 504
Query: 111 DVEKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGD 144
+++A + ++ W A++ G + GH D
Sbjct: 505 RLQEAFDFIKGLEVKPSASVWAALLAGCNVHGHID 539
>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 986
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 95/176 (53%), Gaps = 21/176 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+VS ++N G + A+ F MP+RD V W +I G+++ + + A F+ MQ S I+
Sbjct: 553 NALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIK 612
Query: 80 RDEFTTVRIL---------------------TTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
D+ T +L F+ D+ VG LI MY KCG +E A +V
Sbjct: 613 PDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQV 672
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
F K+ +K+ ++WT+MI G A G G AL++F QM + ++ D +T+VG LSAC H
Sbjct: 673 FHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAH 728
Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 99/199 (49%), Gaps = 25/199 (12%)
Query: 1 MGFALEIFGNMK----NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDG 56
+G I+ ++K D+ W T+++ Y G A+Q F M E+D W ++ G
Sbjct: 126 LGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGG 185
Query: 57 YLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNND 95
Y++ + EA L +M +++ D+ T V +L ++ D
Sbjct: 186 YVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTD 245
Query: 96 IFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155
+FVG ALI+M+ KCGD+ A +VF + +D TWT+MI GLA G A ++F +M
Sbjct: 246 LFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEE 305
Query: 156 ASIRLDEVTYVGVLSACTH 174
++ D+V +V +L AC H
Sbjct: 306 EGVQPDKVAFVSLLRACNH 324
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 93/180 (51%), Gaps = 21/180 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ T +++ +I G + A + F +P RD V WT+MI G R RF++A LF+ M+
Sbjct: 245 DLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRME 304
Query: 75 TSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVE 113
++ D+ V +L N+ +I+VG A++ MY KCG +E
Sbjct: 305 EEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSME 364
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
A VF + ++ +WTAMI G A G D A F++M+ + I + VT++ +L AC+
Sbjct: 365 DALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACS 424
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 21/175 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T ++S Y G + A + F ++ +++ V W AMI Y++ ++ AL F+ + I+
Sbjct: 452 TALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIK 511
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
+ T IL +D+ V AL+ M+ CGD+ A+ +
Sbjct: 512 PNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNL 571
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
F M ++D +W +I G G A D F M + I+ D++T+ G+L+AC
Sbjct: 572 FNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACA 626
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 12/170 (7%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
ALE+F +K ++V+SWT +++G+ G++D A ++ + MI+ + NR
Sbjct: 366 ALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEA-----------FLFFNKMIESGIEPNRV 414
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT-FNNDIFVGIALIDMYCKCGDVEKAQRVFWKM 122
L S ++R + I+ + +D V AL+ MY KCG ++ A RVF K+
Sbjct: 415 TFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKI 474
Query: 123 LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+++ W AMI D AL F +L+ I+ + T+ +L+ C
Sbjct: 475 SKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVC 524
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV+ T ++S Y G ++ A Q F ++P+++ WT+MI GY + R +EAL LF +MQ
Sbjct: 649 DVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQ 708
Query: 75 TSNIRRDEFTTVRILTT 91
++ D T V L+
Sbjct: 709 QEGVKPDWITFVGALSA 725
>gi|23617093|dbj|BAC20776.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
Length = 681
Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats.
Identities = 61/183 (33%), Positives = 99/183 (54%), Gaps = 21/183 (11%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
+DV++W +++GY+ G + +AR+ F +MP RD + W+ ++ GY++ AL +FR M
Sbjct: 211 RDVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNM 270
Query: 74 QTSNIRRDEFTTVRILTT-----------FNNDIF----------VGIALIDMYCKCGDV 112
+R ++ V L+ F +++ VG AL+DMY KCG V
Sbjct: 271 VEQGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCV 330
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
A+ VF M R+D F W AMI GLA G G A+++F + + + VT+VGVL+ C
Sbjct: 331 AVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGC 390
Query: 173 THN 175
+ +
Sbjct: 391 SRS 393
Score = 38.9 bits (89), Expect = 0.79, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLR-KDKFTWTAMIVGLAISGHGDTALDMFSQM 153
D+FV AL+ Y GDV +RVF ++ R +D TW ++ G +G A ++F +M
Sbjct: 180 DLFVRNALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAGYVRAGMMTVAREVFDEM 239
Query: 154 LRASIRLDEVTY 165
+R DE+++
Sbjct: 240 ---PVR-DEISW 247
>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
Length = 651
Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats.
Identities = 61/183 (33%), Positives = 99/183 (54%), Gaps = 21/183 (11%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
+DV++W +++GY+ G + +AR+ F +MP RD + W+ ++ GY++ AL +FR M
Sbjct: 211 RDVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNM 270
Query: 74 QTSNIRRDEFTTVRILTT-----------FNNDIF----------VGIALIDMYCKCGDV 112
+R ++ V L+ F +++ VG AL+DMY KCG V
Sbjct: 271 VEQGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCV 330
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
A+ VF M R+D F W AMI GLA G G A+++F + + + VT+VGVL+ C
Sbjct: 331 AVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGC 390
Query: 173 THN 175
+ +
Sbjct: 391 SRS 393
Score = 38.9 bits (89), Expect = 0.79, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLR-KDKFTWTAMIVGLAISGHGDTALDMFSQM 153
D+FV AL+ Y GDV +RVF ++ R +D TW ++ G +G A ++F +M
Sbjct: 180 DLFVRNALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAGYVRAGMMTVAREVFDEM 239
Query: 154 LRASIRLDEVTY 165
+R DE+++
Sbjct: 240 ---PVR-DEISW 247
>gi|115470713|ref|NP_001058955.1| Os07g0163900 [Oryza sativa Japonica Group]
gi|113610491|dbj|BAF20869.1| Os07g0163900 [Oryza sativa Japonica Group]
Length = 664
Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats.
Identities = 61/183 (33%), Positives = 99/183 (54%), Gaps = 21/183 (11%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
+DV++W +++GY+ G + +AR+ F +MP RD + W+ ++ GY++ AL +FR M
Sbjct: 211 RDVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNM 270
Query: 74 QTSNIRRDEFTTVRILTT-----------FNNDIF----------VGIALIDMYCKCGDV 112
+R ++ V L+ F +++ VG AL+DMY KCG V
Sbjct: 271 VEQGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCV 330
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
A+ VF M R+D F W AMI GLA G G A+++F + + + VT+VGVL+ C
Sbjct: 331 AVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGC 390
Query: 173 THN 175
+ +
Sbjct: 391 SRS 393
Score = 38.9 bits (89), Expect = 0.79, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLR-KDKFTWTAMIVGLAISGHGDTALDMFSQM 153
D+FV AL+ Y GDV +RVF ++ R +D TW ++ G +G A ++F +M
Sbjct: 180 DLFVRNALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAGYVRAGMMTVAREVFDEM 239
Query: 154 LRASIRLDEVTY 165
+R DE+++
Sbjct: 240 ---PVR-DEISW 247
>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
Length = 694
Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats.
Identities = 64/177 (36%), Positives = 96/177 (54%), Gaps = 21/177 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T ++ Y G++ AR+ F M RD V W+AMI GY + ++ REAL LF EMQ + +
Sbjct: 260 TALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVE 319
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
++ T V +L+ + +G AL+D Y KCG ++ A
Sbjct: 320 PNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEA 379
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
F M K+ +TWTA+I G+A +G G AL++FS M A I +VT++GVL AC+H+
Sbjct: 380 FESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHS 436
Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 55/174 (31%), Positives = 85/174 (48%), Gaps = 21/174 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
++++ Y + G V AR F E V+W A++ YL+ + E + +F+ M +
Sbjct: 159 SSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVA 218
Query: 80 RDEFTTVRILTTFN--NDIFVG-------------------IALIDMYCKCGDVEKAQRV 118
DE T V ++T D +G AL+DMY KCG++ KA+R+
Sbjct: 219 FDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRL 278
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
F M +D W+AMI G + AL +FS+M A + ++VT V VLSAC
Sbjct: 279 FDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSAC 332
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 39/78 (50%)
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML 154
D FV +LI MY CGDV A+ VF W A++ +G ++MF ML
Sbjct: 154 DRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGML 213
Query: 155 RASIRLDEVTYVGVLSAC 172
+ DEVT V V++AC
Sbjct: 214 EVGVAFDEVTLVSVVTAC 231
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 26/154 (16%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T +V Y G +D A + F MP ++ WTA+I G R REAL LF M+ + I
Sbjct: 361 TALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIE 420
Query: 80 RDEFTTVRILTTFNNDIFV--------------GI--------ALIDMYCKCGDVEKAQR 117
+ T + +L ++ V GI ++D+ + G V++A +
Sbjct: 421 PTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQ 480
Query: 118 VFWKM-LRKDKFTWTAMIVGLAIS---GHGDTAL 147
M + + W A++ A+ G G+ AL
Sbjct: 481 FIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEAL 514
>gi|15240355|ref|NP_200988.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171532|sp|Q9FLS9.1|PP441_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61800
gi|10176873|dbj|BAB10080.1| unnamed protein product [Arabidopsis thaliana]
gi|332010136|gb|AED97519.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 499
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 99/193 (51%), Gaps = 21/193 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
AL++F +DV+++ ++ G + ++ AR+ F MP RD V W ++I GY ++N
Sbjct: 171 ALQLFDENPQRDVVTYNVLIDGLVKAREIVRARELFDSMPLRDLVSWNSLISGYAQMNHC 230
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
REA+ LF EM ++ D V L+ D F+ L
Sbjct: 231 REAIKLFDEMVALGLKPDNVAIVSTLSACAQSGDWQKGKAIHDYTKRKRLFIDSFLATGL 290
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+D Y KCG ++ A +F K FTW AMI GLA+ G+G+ +D F +M+ + I+ D
Sbjct: 291 VDFYAKCGFIDTAMEIFELCSDKTLFTWNAMITGLAMHGNGELTVDYFRKMVSSGIKPDG 350
Query: 163 VTYVGVLSACTHN 175
VT++ VL C+H+
Sbjct: 351 VTFISVLVGCSHS 363
>gi|357453191|ref|XP_003596872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240903|gb|ABD32761.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355485920|gb|AES67123.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 517
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 108/195 (55%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ +A +F M ++++SW T++ GY+ G VD A + F ++P ++ V WT +I G+++
Sbjct: 142 LDYARLVFDQMGVRNLVSWNTMIDGYMKNGDVDDALKLFDKLPVKNVVSWTVVIGGFVKK 201
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
+ EAL FREMQ + + D T + I++ F +++ V
Sbjct: 202 ECYEEALECFREMQLAGVVPDFVTVIAIISACANLGALGLGLWVHRLVMKKEFRDNVKVL 261
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
+LIDMY +CG +E A++VF M +++ +W ++IVG A++G D AL F M + +
Sbjct: 262 NSLIDMYARCGCIELARQVFDGMSQRNLVSWNSIIVGFAVNGLADKALSFFRSMKKEGLE 321
Query: 160 LDEVTYVGVLSACTH 174
+ V+Y L+AC+H
Sbjct: 322 PNGVSYTSALTACSH 336
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 25/131 (19%)
Query: 48 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT-----------TFN--- 93
V WT+ I + + N F +A + F +M + + + T + +L+ TF
Sbjct: 53 VSWTSSISHHCKNNNFLKAASEFIQMLEAEVEPNHITLITLLSACAHSPSKTSITFGAAL 112
Query: 94 -----------NDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGH 142
ND+ VG ALIDMY KCG ++ A+ VF +M ++ +W MI G +G
Sbjct: 113 HTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLVFDQMGVRNLVSWNTMIDGYMKNGD 172
Query: 143 GDTALDMFSQM 153
D AL +F ++
Sbjct: 173 VDDALKLFDKL 183
>gi|449437737|ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Cucumis sativus]
Length = 649
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 107/195 (54%), Gaps = 24/195 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +++ SW T+++G+I G+++ A +F +M ++ V WTA+I G+++ R
Sbjct: 272 AFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRS 331
Query: 64 REALTLFREMQTSN-IRRDEFTTVRIL---------------------TTFNNDIFVGIA 101
EAL +F EMQ +N ++ +E T V +L T + V A
Sbjct: 332 EEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSA 391
Query: 102 LIDMYCKCGDVEKAQRVF--WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
LI+MY KCG++E A+++F + +D +W MI A GHG A+ +F +M R
Sbjct: 392 LINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFR 451
Query: 160 LDEVTYVGVLSACTH 174
D VTY+ +LSAC+H
Sbjct: 452 PDNVTYIALLSACSH 466
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 94/171 (54%), Gaps = 19/171 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F M +DVISWTT+V+G G++D AR F +MP R+ V W MI GY + R
Sbjct: 210 AQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRL 269
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
EA LF +M R L+++N +I + + G +E+A F+KM
Sbjct: 270 DEAFKLFEQMPE-----------RELSSWN-------TMITGFIQNGKLERAVDFFYKMS 311
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRA-SIRLDEVTYVGVLSACT 173
K+ TWTA+I G G + AL +FS+M A +++ +E T+V VL AC+
Sbjct: 312 NKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACS 362
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 24/172 (13%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE-RDYVLWTAMIDGYLR 59
+G A ++F M ++DV+SWT +++GYI G ++ A+ F + ++ V WTA++ GY+R
Sbjct: 82 IGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFDRNDAIKNVVTWTALVSGYVR 141
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGD-------- 111
NR EA LF M N+ + ++ + ++ AL D++ K +
Sbjct: 142 WNRIEEARRLFDAMPVKNV----ISWNTMIEGYARKGWIDQAL-DLFEKMPERNVVSWNT 196
Query: 112 ----------VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
V++AQ +F +M +D +WT M+ GL+ +G D A +F +M
Sbjct: 197 VITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKM 248
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 17/146 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
N +V +++ G++ ARQ F +MP+RD V WTA+I GY++ EA TLF
Sbjct: 63 NSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFD- 121
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA 132
R D V T AL+ Y + +E+A+R+F M K+ +W
Sbjct: 122 ------RNDAIKNVVTWT----------ALVSGYVRWNRIEEARRLFDAMPVKNVISWNT 165
Query: 133 MIVGLAISGHGDTALDMFSQMLRASI 158
MI G A G D ALD+F +M ++
Sbjct: 166 MIEGYARKGWIDQALDLFEKMPERNV 191
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 27/155 (17%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYF--AQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
DV+S +++ Y G++++AR+ F + RD V W MI Y +A++LF E
Sbjct: 387 DVVS--ALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDE 444
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFVG----------------------IALIDMYCKCG 110
MQ R D T + +L+ ++ V L+D++ + G
Sbjct: 445 MQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKLREDHFTCLVDLFGRAG 504
Query: 111 DVEKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGD 144
+++A + ++ W A++ G + GH D
Sbjct: 505 RLQEAFDFIKGLEVKPSASVWAALLAGCNVHGHID 539
>gi|218197545|gb|EEC79972.1| hypothetical protein OsI_21597 [Oryza sativa Indica Group]
Length = 731
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 106/192 (55%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
AL++F M+ + V+++ ++SG ++G++ A + F + P RD V W+ ++ G
Sbjct: 410 ALDLFHMMQKRTVVTYNVMISGLFHQGKITEAYKLFNESPTRDSVTWSCLVAGLATNGLI 469
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN-------------DIFVGI--------AL 102
EAL +++M SNIR E +++ +N I +G+ +L
Sbjct: 470 HEALQFYKKMLLSNIRPSESVVSSLISCLSNYSMMVHGQQFHATTIKIGLDSHLLIQNSL 529
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I +YCKCG++ AQ +F M ++DK TW +I G A++ G A++MF M +A + D+
Sbjct: 530 ISLYCKCGEMIIAQSIFDLMAKRDKVTWNTIIHGYALNNLGQNAVEMFESMTKAQVDPDD 589
Query: 163 VTYVGVLSACTH 174
+T++GVLSAC H
Sbjct: 590 ITFLGVLSACNH 601
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 21/174 (12%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A + F M ++V+SWT ++ G+ +VD+A Q F MP ++ V W MI G++
Sbjct: 151 VGDARKAFDRMPVRNVVSWTAMIKGHFTVHEVDMAFQLFKLMPVKNSVSWCVMIGGFVTH 210
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVG 99
+F EA+ LF + + V+I+ F D+ +
Sbjct: 211 EKFSEAVELFNSLMMNGEEVTNVILVKIVNAFAGMKSIRGGRCIHGLAVKSGFAYDLVLE 270
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+L+ MYCK D+ +A+ F KM +W AM+ G S D A +F M
Sbjct: 271 ASLVLMYCKSLDITEARLEFDKMEGNHVGSWNAMLCGYIYSDKIDEARKLFDSM 324
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 22/167 (13%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 67
F M+ V SW ++ GYI ++D AR+ F M RD + W +MI+GY+ R +A
Sbjct: 290 FDKMEGNHVGSWNAMLCGYIYSDKIDEARKLFDSMNNRDKISWNSMINGYINDGRIADAT 349
Query: 68 TLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDK 127
L+ +M ++ AL+ + G ++KA+ +F+ M + D
Sbjct: 350 ELYSKMTEKSLE------------------AATALMSWFIDNGMLDKARDMFYNMPQIDV 391
Query: 128 FTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+ T ++ G GH D ALD+F M + ++ VTY ++S H
Sbjct: 392 MSCTTLLFGYVKGGHMDDALDLFHMMQKRTV----VTYNVMISGLFH 434
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 90/203 (44%), Gaps = 50/203 (24%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQV------------------------------- 32
A ++F +M N+D ISW ++++GYIN G++
Sbjct: 317 ARKLFDSMNNRDKISWNSMINGYINDGRIADATELYSKMTEKSLEAATALMSWFIDNGML 376
Query: 33 DIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTF 92
D AR F MP+ D + T ++ GY++ +AL LF MQ R + T+
Sbjct: 377 DKARDMFYNMPQIDVMSCTTLLFGYVKGGHMDDALDLFHMMQK-----------RTVVTY 425
Query: 93 NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
N +I G + +A ++F + +D TW+ ++ GLA +G AL + +
Sbjct: 426 N-------VMISGLFHQGKITEAYKLFNESPTRDSVTWSCLVAGLATNGLIHEALQFYKK 478
Query: 153 MLRASIRLDEVTYVGVLSACTHN 175
ML ++IR E + V L +C N
Sbjct: 479 MLLSNIRPSE-SVVSSLISCLSN 500
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 72/157 (45%), Gaps = 23/157 (14%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
+++S Y G++ IA+ F M +RD V W +I GY N + A+ +F M + +
Sbjct: 528 SLISLYCKCGEMIIAQSIFDLMAKRDKVTWNTIIHGYALNNLGQNAVEMFESMTKAQVDP 587
Query: 81 DEFTTVRILTTFNN----------------------DIFVGIALIDMYCKCGDVEKAQRV 118
D+ T + +L+ N+ +I ++D++C+ +++A+ +
Sbjct: 588 DDITFLGVLSACNHMSLLEEAKYFFNAMTCTYGILPNIMHYACMVDLFCRKCMIKEAEGL 647
Query: 119 FWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQML 154
M D WT+++ G ++G+ A SQ++
Sbjct: 648 VKSMPFEPDSAIWTSLLSGCRLTGNDKLAEHAASQLI 684
Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 20/152 (13%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
+++ ++ G+++ AR+ F MP RD V W ++ R A+ F EM+ R D
Sbjct: 41 LMAEHLRAGRLEAAREVFDGMPRRDVVSWNTIMAVQARAGSHGRAVGAFLEMRRQGFRPD 100
Query: 82 EFTTVRILTTF--------------------NNDIFVGIALIDMYCKCGDVEKAQRVFWK 121
+ L+ + ++ + ALI V A++ F +
Sbjct: 101 HTSFSTALSACARLEALEMGSCLEQVLDGVESPNVALWNALISGLVMNHRVGDARKAFDR 160
Query: 122 MLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
M ++ +WTAMI G D A +F M
Sbjct: 161 MPVRNVVSWTAMIKGHFTVHEVDMAFQLFKLM 192
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+ + + G +E A+ VF M R+D +W ++ A +G A+ F +M R R D
Sbjct: 41 LMAEHLRAGRLEAAREVFDGMPRRDVVSWNTIMAVQARAGSHGRAVGAFLEMRRQGFRPD 100
Query: 162 EVTYVGVLSACT 173
++ LSAC
Sbjct: 101 HTSFSTALSACA 112
>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats.
Identities = 68/195 (34%), Positives = 103/195 (52%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +F +D IS+T +++GY G +D ARQ F +MP +D V W AMI GY ++
Sbjct: 180 MNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQM 239
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT--------FNNDIFVGI------------ 100
R +EAL LF +M+ +N+ +E T V +L+ N + I
Sbjct: 240 GRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLV 299
Query: 101 -ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMY KCGD++ A+ +F ML +D +W MI G AL +F +ML + +
Sbjct: 300 NALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVE 359
Query: 160 LDEVTYVGVLSACTH 174
E+T++ +L +C H
Sbjct: 360 PTEITFLSILPSCAH 374
Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats.
Identities = 64/174 (36%), Positives = 92/174 (52%), Gaps = 21/174 (12%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
++ Y G + AR+ F M ERD + W MI GY + ++EAL LFREM S +
Sbjct: 302 LIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPT 361
Query: 82 EFTTVRILTT---------------FNNDIF------VGIALIDMYCKCGDVEKAQRVFW 120
E T + IL + + N F + +LID+Y KCG++ A++VF
Sbjct: 362 EITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFD 421
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
M K +W AMI GLA+ G D A ++FS+M I +E+T+VG+LSAC H
Sbjct: 422 GMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKH 475
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 51/198 (25%), Positives = 77/198 (38%), Gaps = 52/198 (26%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G + A F + E + +W +MI G AL F M S + + +T +L
Sbjct: 77 GDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLL 136
Query: 90 TT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVF--------- 119
+ F +D+F+ +LI+MY + G++ AQ VF
Sbjct: 137 KSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAI 196
Query: 120 -----------W-----------KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
W +M KD +W AMI G A G AL +F M +A+
Sbjct: 197 SFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKAN 256
Query: 158 IRLDEVTYVGVLSACTHN 175
+ +E T V VLSAC +
Sbjct: 257 VPPNESTIVSVLSACAQS 274
Score = 39.7 bits (91), Expect = 0.44, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 61/153 (39%), Gaps = 24/153 (15%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT 85
Y G + ARQ F M + W AMI G + +A LF +M + I +E T
Sbjct: 407 YAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITF 466
Query: 86 VRILTTFNNDIFVGIALIDMYCK-CGDVEKAQRVFWKMLRKDKFT-----WTAMIVGLAI 139
V IL+ CK G V+ Q+ F M++ K + + MI L
Sbjct: 467 VGILSA---------------CKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGR 511
Query: 140 SGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+G + A + M ++ D + +L AC
Sbjct: 512 AGLFEEAESLLQNM---EVKPDGAIWGSLLGAC 541
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 88 ILTTFNNDIFVGIALIDM--YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDT 145
I T +N +F LI+ + GD+ A +F + + F W +MI GL++S
Sbjct: 53 IKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPAL 112
Query: 146 ALDMFSQMLRASIRLDEVTYVGVLSAC 172
AL F +M+ + + + T+ +L +C
Sbjct: 113 ALVFFVRMIYSGVEPNSYTFPFLLKSC 139
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats.
Identities = 65/192 (33%), Positives = 103/192 (53%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F ++DV+S+T +++GY + G + A++ F ++P +D V W AMI GY +
Sbjct: 120 AHKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSY 179
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
+EAL LF+EM +N+R DE T V +L+ F +++ + AL
Sbjct: 180 KEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNAL 239
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
ID+Y KCG VE A +F + KD +W +I G AL +F +MLR+ ++
Sbjct: 240 IDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPND 299
Query: 163 VTYVGVLSACTH 174
VT V +L AC H
Sbjct: 300 VTIVSILPACAH 311
Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats.
Identities = 63/177 (35%), Positives = 91/177 (51%), Gaps = 23/177 (12%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
++ Y GQV+ A F + +D V W +I GY +N ++EAL LF+EM S +
Sbjct: 239 LIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPN 298
Query: 82 EFTTVRILTT-----------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
+ T V IL N + +LIDMY KCGD+E A +V
Sbjct: 299 DVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQV 358
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
F ML K +W AMI G A+ G + D+FS+M + I D++T+VG+LSAC+H+
Sbjct: 359 FNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHS 415
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 18/132 (13%)
Query: 44 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALI 103
E D + T++I Y + R +A +F + + D+ ALI
Sbjct: 98 EPDLYVHTSLISMYAQNGRLEDAHKVFDR------------------SSHRDVVSYTALI 139
Query: 104 DMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEV 163
Y G++ AQ +F ++ KD +W AMI G A +G AL++F +M++ ++R DE
Sbjct: 140 TGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEG 199
Query: 164 TYVGVLSACTHN 175
T V VLSAC +
Sbjct: 200 TMVTVLSACAQS 211
>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Glycine max]
Length = 785
Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats.
Identities = 65/182 (35%), Positives = 102/182 (56%), Gaps = 22/182 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
+VI++T+++ GY G +D AR F + RD V WTAMI GY + +AL LFR M
Sbjct: 345 NVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMI 404
Query: 75 TSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVE 113
+ + +T +L+ ++ + VG ALI MY + G ++
Sbjct: 405 REGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIK 464
Query: 114 KAQRVFWKMLR-KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
A+++F + +D TWT+MI+ LA G G+ A+++F +MLR +++ D +TYVGVLSAC
Sbjct: 465 DARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSAC 524
Query: 173 TH 174
TH
Sbjct: 525 TH 526
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 66/224 (29%), Positives = 96/224 (42%), Gaps = 53/224 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M K SW TI+S + G +D AR+ F ++P+ D V WT MI GY + F
Sbjct: 67 AHRLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLF 126
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTF---------------------NNDIFVGIAL 102
+ A+ F M +S I +FT +L + + + V +L
Sbjct: 127 KSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSL 186
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM----------------------------- 133
++MY KCGD A+ VF +M KD TW M
Sbjct: 187 LNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWN 246
Query: 134 --IVGLAISGHGDTALDMFSQMLR-ASIRLDEVTYVGVLSACTH 174
I G G+ AL+ FS ML+ +S++ D+ T VLSAC +
Sbjct: 247 SIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACAN 290
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 64/219 (29%), Positives = 91/219 (41%), Gaps = 55/219 (25%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M+ KD +W T++S ++ Q D+A F QM + D V W ++I GY A
Sbjct: 202 VFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRA 261
Query: 67 LTLFREM-QTSNIRRDEFTTVRILTTFNN-------------------DIF--VGIALID 104
L F M ++S+++ D+FT +L+ N DI VG ALI
Sbjct: 262 LETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALIS 321
Query: 105 MYCKCGDVEKAQRV---------------------------------FWKMLRKDKFTWT 131
MY K G VE A R+ F + +D WT
Sbjct: 322 MYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWT 381
Query: 132 AMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLS 170
AMIVG A +G AL +F M+R + + T VLS
Sbjct: 382 AMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLS 420
Score = 50.1 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
Query: 57 YLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQ 116
YL V L L+ + +S+ F + + TTF+ + ++ + K G+++ A+
Sbjct: 45 YLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWN-----TILSAHAKAGNLDSAR 99
Query: 117 RVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
RVF ++ + D +WT MIVG G +A+ F +M+ + I + T+ VL++C
Sbjct: 100 RVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLASC 155
>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats.
Identities = 67/178 (37%), Positives = 101/178 (56%), Gaps = 25/178 (14%)
Query: 22 IVSGYINRGQVDIARQYFAQMPE----RDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 77
I+ Y G++ AR+ F +MPE +D V WTAMIDG++R AL FR MQ N
Sbjct: 178 IMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGEN 237
Query: 78 IRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVEKAQ 116
+R +EFT V +L+ + ++FVG ALI+MY +CG +++AQ
Sbjct: 238 VRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQ 297
Query: 117 RVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
VF +M +D T+ MI GL+++G A+++F M+ +R VT+VGVL+AC+H
Sbjct: 298 TVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSH 355
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 25/168 (14%)
Query: 32 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT 91
+D A + F + L+TA+IDG++ + EA+ L+ M +I D + IL
Sbjct: 87 IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKA 146
Query: 92 ---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKM----LRKD 126
F+++ V + ++++Y KCG++ A+RVF +M + KD
Sbjct: 147 CGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKD 206
Query: 127 KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
WTAMI G + + AL+ F M ++R +E T V VLSAC+
Sbjct: 207 TVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQ 254
Score = 43.5 bits (101), Expect = 0.034, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 40/80 (50%)
Query: 93 NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
+ D F+ L+ KC ++ A R+F + + +TA+I G SG+ A+ ++S+
Sbjct: 68 SQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSR 127
Query: 153 MLRASIRLDEVTYVGVLSAC 172
ML SI D +L AC
Sbjct: 128 MLHESILPDNYLMASILKAC 147
>gi|357511423|ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355501015|gb|AES82218.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 607
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 100/188 (53%), Gaps = 22/188 (11%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 67
F M +++ISWTT+V+GY+ QV+ AR F M ER+ V WTAMI GY++ RF +AL
Sbjct: 195 FDQMPQRNIISWTTLVNGYVKNKQVNKARSVFDDMSERNVVSWTAMISGYVQNKRFVDAL 254
Query: 68 TLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIALIDMY 106
LF M + R + FT +L + ND+ +L+DMY
Sbjct: 255 KLFVLMFKTETRPNHFTFSSVLDACAGSSSLIMGLQLHPCIIKSGIANDVIWLTSLVDMY 314
Query: 107 CKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYV 166
KCGD++ A VF + K+ +W A+I G A G AL+ F +M + DEVT+V
Sbjct: 315 AKCGDMDAAFGVFESIRDKNLVSWNAIIGGYASHGLATRALEEFDRM-KVVGTPDEVTFV 373
Query: 167 GVLSACTH 174
VLSAC H
Sbjct: 374 NVLSACVH 381
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 69/170 (40%), Gaps = 21/170 (12%)
Query: 10 NMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 69
N+ + +++SW +++ Y+ Q+ F +MP +D V W M+ G+ R
Sbjct: 34 NLLSCNIVSWNMVMTAYLQHNQIGPVHDLFDKMPLKDAVSWNIMLSGFQRTRNSEGLYRC 93
Query: 70 FREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCK 108
F +M + + +++T +L + ++FVG +LI Y
Sbjct: 94 FLQMGRAGVVPNDYTISTLLRAVISTELDVLVRQVHALAFHLGHYLNVFVGSSLIRAYAG 153
Query: 109 CGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
+ E R F + KD +W A++ G A F QM + +I
Sbjct: 154 LKEEEALGRAFNDISMKDVTSWNALVSSYMELGKFVDAQTAFDQMPQRNI 203
Score = 36.2 bits (82), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/143 (19%), Positives = 57/143 (39%), Gaps = 17/143 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGY 57
M A +F ++++K+++SW I+ GY + G A + F +M D V + ++
Sbjct: 320 MDAAFGVFESIRDKNLVSWNAIIGGYASHGLATRALEEFDRMKVVGTPDEVTFVNVLSAC 379
Query: 58 LRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQR 117
+ E F +M T + E ++D+Y + G ++A+
Sbjct: 380 VHAGLVEEGEKHFTDMLTKYGIQAEMEHYS-------------CMVDLYGRAGRFDEAEN 426
Query: 118 VFWKM-LRKDKFTWTAMIVGLAI 139
+ M D W A++ +
Sbjct: 427 LIKNMPFEPDVVLWGALLAACGL 449
>gi|194696956|gb|ACF82562.1| unknown [Zea mays]
gi|413957085|gb|AFW89734.1| selenium-binding protein-like protein [Zea mays]
Length = 605
Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats.
Identities = 70/183 (38%), Positives = 94/183 (51%), Gaps = 23/183 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV+SWTT+V G + G D AR F MPER+ V W AM+ GY++ RF +AL +F EM+
Sbjct: 164 DVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEMR 223
Query: 75 TSNI---------------------RRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVE 113
+ R E + D + A++DMYCKCG VE
Sbjct: 224 ARGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVVDMYCKCGCVE 283
Query: 114 KAQRVF--WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+A RVF + K TW MI G A+ G G+ AL +F +M R + D+VT V VL+A
Sbjct: 284 EAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGEDALKLFGRMEREGVAPDDVTLVNVLTA 343
Query: 172 CTH 174
C H
Sbjct: 344 CAH 346
>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Glycine max]
Length = 676
Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats.
Identities = 70/180 (38%), Positives = 98/180 (54%), Gaps = 21/180 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV T +V Y G + AR+ F ++PE++ V WTA+I GY+ F EAL LFR +
Sbjct: 136 DVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLL 195
Query: 75 TSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVE 113
+R D FT VRIL + ++FV +L+DMY KCG +E
Sbjct: 196 EMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSME 255
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+A+RVF M+ KD W+A+I G A +G ALD+F +M R ++R D VGV SAC+
Sbjct: 256 EARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACS 315
Score = 115 bits (287), Expect = 9e-24, Method: Composition-based stats.
Identities = 65/181 (35%), Positives = 95/181 (52%), Gaps = 21/181 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
+V T++V Y G ++ AR+ F M E+D V W+A+I GY +EAL +F EMQ
Sbjct: 237 NVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQ 296
Query: 75 TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVE 113
N+R D + V + + F ++ +G ALID Y KCG V
Sbjct: 297 RENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVA 356
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+A+ VF M RKD + A+I GLA+ GH A +F QM++ ++ D T+VG+L CT
Sbjct: 357 QAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCT 416
Query: 174 H 174
H
Sbjct: 417 H 417
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 26/165 (15%)
Query: 35 ARQY----FAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFT------ 84
A QY FAQ P + L+ +I G + + FR+A++++ M+ D FT
Sbjct: 50 ATQYATVVFAQTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLK 109
Query: 85 ----------------TVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
++ I T F+ D+FV L+ +Y K G + A++VF ++ K+
Sbjct: 110 ACTRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVV 169
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+WTA+I G SG AL +F +L +R D T V +L AC+
Sbjct: 170 SWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACS 214
>gi|68611229|emb|CAE03043.3| OSJNBa0084A10.18 [Oryza sativa Japonica Group]
Length = 729
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 98/192 (51%), Gaps = 25/192 (13%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
AL++F M ++D ISW I+ GY+ +G +D A +F + P +D + W +I GY +
Sbjct: 301 ALKLFSEMPDRDQISWNAILQGYVQQGDMDSANAWFRRAPNKDAISWNTLISGY----KD 356
Query: 64 REALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIAL 102
AL+L EM ++ D+ T ++ T F +D V +L
Sbjct: 357 EGALSLLSEMIRGGLKPDQATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSL 416
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I MY KCG + +A +VF +L++D TW AMI A G D AL +F M +A R D
Sbjct: 417 ISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFRPDH 476
Query: 163 VTYVGVLSACTH 174
T++ +LSAC H
Sbjct: 477 ATFLSILSACAH 488
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 88/173 (50%), Gaps = 22/173 (12%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
MG A +F M KDV+S T I+ GY+ G VD A + F MP RD V W M+DG++R
Sbjct: 236 MGIAQRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRN 295
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
+R +AL LF EM RD+ ++N A++ Y + GD++ A F
Sbjct: 296 DRLDDALKLFSEMPD----RDQI-------SWN-------AILQGYVQQGDMDSANAWFR 337
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+ KD +W +I G G AL + S+M+R ++ D+ T V+S C
Sbjct: 338 RAPNKDAISWNTLISGYKDEG----ALSLLSEMIRGGLKPDQATLSVVISICA 386
Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 74/155 (47%), Gaps = 18/155 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F + +++V+SW +VSGY G V AR+ F MP RD V W MI GY++
Sbjct: 115 ARELFNRIPDRNVVSWNAMVSGYARNGMVKRARELFDMMPWRDDVSWLTMISGYIKRKHV 174
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
REA LF M + T+ N AL+ Y + G + A+ +F +M
Sbjct: 175 REARELFDSMPSPP------------TSVCN------ALLSGYVELGYMRAAEVLFGQMQ 216
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
++ +W MI G A +G A +F +M +
Sbjct: 217 TRNPVSWNVMITGYARAGSMGIAQRLFDEMPEKDV 251
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 18/146 (12%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 67
F M ++V +W +VSG I + AR+ F MP R+ V W A++ GY R R EA
Sbjct: 57 FDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMPVRNSVSWAALLTGYARCGRVAEAR 116
Query: 68 TLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDK 127
LF + N+ ++N A++ Y + G V++A+ +F M +D
Sbjct: 117 ELFNRIPDRNV-----------VSWN-------AMVSGYARNGMVKRARELFDMMPWRDD 158
Query: 128 FTWTAMIVGLAISGHGDTALDMFSQM 153
+W MI G H A ++F M
Sbjct: 159 VSWLTMISGYIKRKHVREARELFDSM 184
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 69/181 (38%), Gaps = 49/181 (27%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE------------------- 44
A E+F M +D +SW T++SGYI R V AR+ F MP
Sbjct: 146 ARELFDMMPWRDDVSWLTMISGYIKRKHVREARELFDSMPSPPTSVCNALLSGYVELGYM 205
Query: 45 ------------RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTF 92
R+ V W MI GY R A LF EM
Sbjct: 206 RAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMP------------------ 247
Query: 93 NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
D+ A++ Y + G V+ A +VF M +D W M+ G + D AL +FS+
Sbjct: 248 EKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSE 307
Query: 153 M 153
M
Sbjct: 308 M 308
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 18/139 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV T ++ + G+V AR+ F +M ER+ W M+ G +R EA +F M
Sbjct: 33 DVFQSNTAINEHFRAGRVAAARRVFDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMP 92
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
N AL+ Y +CG V +A+ +F ++ ++ +W AM+
Sbjct: 93 VRN------------------SVSWAALLTGYARCGRVAEARELFNRIPDRNVVSWNAMV 134
Query: 135 VGLAISGHGDTALDMFSQM 153
G A +G A ++F M
Sbjct: 135 SGYARNGMVKRARELFDMM 153
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 63/192 (32%), Positives = 103/192 (53%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F ++DV+S+T ++ GY + G + A++ F ++P +D V W A+I GY +
Sbjct: 157 ARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNY 216
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
+EAL LF+EM +N++ DE T V +L+ F +++ + AL
Sbjct: 217 KEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNAL 276
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
ID+Y KCG+VE A +F + KD +W +I G AL +F +MLR+ +E
Sbjct: 277 IDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNE 336
Query: 163 VTYVGVLSACTH 174
VT + +L AC H
Sbjct: 337 VTMLSILPACAH 348
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 63/177 (35%), Positives = 95/177 (53%), Gaps = 23/177 (12%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
++ YI G+V+ A F + +D + W +I GY +N ++EAL LF+EM S +
Sbjct: 276 LIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPN 335
Query: 82 EFTTVRILTT-----------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
E T + IL +N + +LIDMY KCGD+E AQ+V
Sbjct: 336 EVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQV 395
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
F ML + +W AMI G A+ G + A D+FS+M + I D++T+VG+LSAC+H+
Sbjct: 396 FDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHS 452
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 66/130 (50%), Gaps = 18/130 (13%)
Query: 46 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDM 105
D + T++I Y++ R +A +F + + + D+ ALI
Sbjct: 137 DLYVHTSLIAMYVKNGRXEDARKVFDQ------------------SSHRDVVSYTALIKG 178
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y G + AQ++F ++ KD +W A+I G A +G+ AL++F +M++ +++ DE T
Sbjct: 179 YASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTM 238
Query: 166 VGVLSACTHN 175
V VLSAC +
Sbjct: 239 VTVLSACAQS 248
>gi|354805159|gb|AER41579.1| CRR4 [Oryza brachyantha]
Length = 626
Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 98/185 (52%), Gaps = 22/185 (11%)
Query: 12 KNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFR 71
+ KDV+SWT +VS Y G +D A++ F MP ++ V W AMI GY +R+ EAL F+
Sbjct: 264 QKKDVVSWTAMVSAYAKIGDLDTAKELFDHMPLKNLVSWNAMITGYNHNSRYGEALRTFQ 323
Query: 72 EMQTSN-IRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKC 109
M R DE T V +++ I +G ALIDM+ KC
Sbjct: 324 LMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIRKSNVHLTIALGNALIDMFAKC 383
Query: 110 GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVL 169
GDV +AQ +F++M + TWT MI G A +G AL +++ M R + LD++ ++ L
Sbjct: 384 GDVGRAQSIFYEMKTRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELDDMVFIAAL 443
Query: 170 SACTH 174
+AC H
Sbjct: 444 AACVH 448
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 85/186 (45%), Gaps = 15/186 (8%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M ++DV+SW +I+ Y++ G A + F MPER+ V W ++ G+ RV
Sbjct: 162 ARQVFDEMVDRDVVSWNSIIGVYMSSGDYTGAMELFEAMPERNVVSWNTLVAGFARVGDM 221
Query: 64 REALTLFREMQTSN-----------IRRDEFTTVRIL---TTFNNDIFVGIALIDMYCKC 109
A T+F M + N + R + D+ A++ Y K
Sbjct: 222 VTAQTVFDRMPSRNAISWNLMISGYASSGDVEAARSMFDRMDQKKDVVSWTAMVSAYAKI 281
Query: 110 GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS-QMLRASIRLDEVTYVGV 168
GD++ A+ +F M K+ +W AMI G + AL F ML R DE T V V
Sbjct: 282 GDLDTAKELFDHMPLKNLVSWNAMITGYNHNSRYGEALRTFQLMMLEGRFRPDEATLVSV 341
Query: 169 LSACTH 174
+SAC
Sbjct: 342 VSACAQ 347
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 92 FNNDIFVGIALIDMYCKCGD---VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALD 148
F +++FV L+D+Y +CG V A++VF +M+ +D +W ++I SG A++
Sbjct: 136 FGSEVFVQNTLLDVYYRCGGPGRVAAARQVFDEMVDRDVVSWNSIIGVYMSSGDYTGAME 195
Query: 149 MFSQM 153
+F M
Sbjct: 196 LFEAM 200
>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
Length = 695
Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 66/182 (36%), Positives = 102/182 (56%), Gaps = 21/182 (11%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
++VI T ++ Y+ +D AR F +MP RD V W+ MI GY + R E+L LF M
Sbjct: 338 QNVIVHTALMEMYVKCRAIDEARHEFDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERM 397
Query: 74 QTSNIRRDEFTTVRILT---------------------TFNNDIFVGIALIDMYCKCGDV 112
+ +N + +E T V +L+ T ++G ALIDMY KCG V
Sbjct: 398 KATNCKPNEVTLVGVLSACAQLGSDELGEQIGNYIESQTLPLTSYLGSALIDMYTKCGHV 457
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+A+ VF +M +K TW +MI GLA++G + A+ ++ +M+ I+ +EVT+V +L+AC
Sbjct: 458 ARARSVFNRMEQKVVVTWNSMIRGLALNGFAEDAIALYRKMVGDGIQPNEVTFVALLTAC 517
Query: 173 TH 174
TH
Sbjct: 518 TH 519
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 65/197 (32%), Positives = 94/197 (47%), Gaps = 26/197 (13%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M AL F M KD I +++GY G V+ AR+ F MP R W +MI Y
Sbjct: 225 MDSALMAFKEMPVKDPIPMNCLITGYSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHG 284
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFN-----------------------NDIF 97
FREALTLF +M + T I T F+ ++
Sbjct: 285 GEFREALTLFDQMLREGASPNAIT---ITTVFSICAKTGDLDTGRRARAWIREEDLQNVI 341
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
V AL++MY KC +++A+ F +M R+D W+ MI G + +G +L++F +M +
Sbjct: 342 VHTALMEMYVKCRAIDEARHEFDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERMKATN 401
Query: 158 IRLDEVTYVGVLSACTH 174
+ +EVT VGVLSAC
Sbjct: 402 CKPNEVTLVGVLSACAQ 418
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 44/109 (40%), Gaps = 31/109 (28%)
Query: 95 DIFVGIALIDMYC-------------------------------KCGDVEKAQRVFWKML 123
D+FV AL+D Y K GDVE+A+R+F M
Sbjct: 208 DVFVQTALVDFYAKNGDMDSALMAFKEMPVKDPIPMNCLITGYSKSGDVEEARRLFDSMP 267
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
R+ +W +MI A G AL +F QMLR + +T V S C
Sbjct: 268 RRTSASWNSMIACYAHGGEFREALTLFDQMLREGASPNAITITTVFSIC 316
>gi|5803274|dbj|BAA83584.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|55296350|dbj|BAD68395.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125596022|gb|EAZ35802.1| hypothetical protein OsJ_20095 [Oryza sativa Japonica Group]
Length = 763
Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 106/192 (55%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
AL++F M+ + V+++ ++SG ++G++ A + F + P RD V W+ ++ G
Sbjct: 442 ALDLFHMMQKRTVVTYNVMISGLFHQGKITEAYKLFNESPTRDSVTWSCLVAGLATNGLI 501
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN-------------DIFVGI--------AL 102
EAL +++M SNIR E +++ +N I +G+ +L
Sbjct: 502 HEALQFYKKMLLSNIRPSESVVSSLISCLSNYSMMVHGQQFHATTIKIGLDSHLLIQNSL 561
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I +YCKCG++ AQ +F M ++DK TW +I G A++ G A++MF M +A + D+
Sbjct: 562 ISLYCKCGEMIIAQSIFDLMAKRDKVTWNTIIHGYALNNLGQNAVEMFESMTKAQVDPDD 621
Query: 163 VTYVGVLSACTH 174
+T++GVLSAC H
Sbjct: 622 ITFLGVLSACNH 633
Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 80/174 (45%), Gaps = 21/174 (12%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G+A + F M ++V+SWT ++ G+ +VD+A Q F MP ++ V W MI G++
Sbjct: 183 VGYARKAFDRMPVRNVVSWTAMIKGHFTAHEVDMAFQLFKLMPVKNSVSWCVMIGGFVTH 242
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVG 99
+F EA+ LF + + V+I+ F D+ +
Sbjct: 243 EKFSEAVELFNSLMMNGEEVTNVILVKIVNAFAGMKSIRGGRCIHGLAVKSGFAYDLVLE 302
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+L+ MYCK D+ +A+ F KM +W AM+ G S D A +F M
Sbjct: 303 ASLVLMYCKSLDITEARLEFDKMEGNHVGSWNAMLCGYIYSDKIDEARKLFDSM 356
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 22/167 (13%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 67
F M+ V SW ++ GYI ++D AR+ F M RD + W +MI+GY+ R +A
Sbjct: 322 FDKMEGNHVGSWNAMLCGYIYSDKIDEARKLFDSMNNRDKISWNSMINGYINDGRIADAT 381
Query: 68 TLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDK 127
L+ +M ++ AL+ + G ++KA+ +F+ M + D
Sbjct: 382 ELYSKMTEKSLE------------------AATALMSWFIDNGMLDKARDMFYNMPQIDV 423
Query: 128 FTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+ T ++ G GH D ALD+F M + ++ VTY ++S H
Sbjct: 424 MSCTTLLFGYVKGGHMDDALDLFHMMQKRTV----VTYNVMISGLFH 466
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 90/203 (44%), Gaps = 50/203 (24%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQV------------------------------- 32
A ++F +M N+D ISW ++++GYIN G++
Sbjct: 349 ARKLFDSMNNRDKISWNSMINGYINDGRIADATELYSKMTEKSLEAATALMSWFIDNGML 408
Query: 33 DIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTF 92
D AR F MP+ D + T ++ GY++ +AL LF MQ R + T+
Sbjct: 409 DKARDMFYNMPQIDVMSCTTLLFGYVKGGHMDDALDLFHMMQK-----------RTVVTY 457
Query: 93 NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
N +I G + +A ++F + +D TW+ ++ GLA +G AL + +
Sbjct: 458 N-------VMISGLFHQGKITEAYKLFNESPTRDSVTWSCLVAGLATNGLIHEALQFYKK 510
Query: 153 MLRASIRLDEVTYVGVLSACTHN 175
ML ++IR E + V L +C N
Sbjct: 511 MLLSNIRPSE-SVVSSLISCLSN 532
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 72/157 (45%), Gaps = 23/157 (14%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
+++S Y G++ IA+ F M +RD V W +I GY N + A+ +F M + +
Sbjct: 560 SLISLYCKCGEMIIAQSIFDLMAKRDKVTWNTIIHGYALNNLGQNAVEMFESMTKAQVDP 619
Query: 81 DEFTTVRILTTFNN----------------------DIFVGIALIDMYCKCGDVEKAQRV 118
D+ T + +L+ N+ +I ++D++C+ +++A+ +
Sbjct: 620 DDITFLGVLSACNHMSLLEEAKYFFNAMTCTYGILPNIMHYACMVDLFCRKCMIKEAEGL 679
Query: 119 FWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQML 154
M D WT+++ G ++G+ A SQ++
Sbjct: 680 VKSMPFEPDSAIWTSLLSGCRLTGNDKLAEHAASQLI 716
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 21/153 (13%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
+++ ++ G+++ AR+ F MP RD V W ++ R A+ F EM+ R D
Sbjct: 41 LMAEHLRAGRLEAAREVFDGMPRRDVVSWNTIMAVQARAGSHGRAVGAFLEMRRQGFRPD 100
Query: 82 EFTTVRILTTF---------------------NNDIFVGIALIDMYCKCGDVEKAQRVFW 120
+ L+ + ++FVG +LI MY CG V ++V
Sbjct: 101 HTSFSTALSACARLEALEMGRCVHGLVFKSCSSGNVFVGASLITMYANCGVVSCLEQVLD 160
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+ + W A+I GL ++ A F +M
Sbjct: 161 GVESPNVALWNALISGLVMNHRVGYARKAFDRM 193
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+ + + G +E A+ VF M R+D +W ++ A +G A+ F +M R R D
Sbjct: 41 LMAEHLRAGRLEAAREVFDGMPRRDVVSWNTIMAVQARAGSHGRAVGAFLEMRRQGFRPD 100
Query: 162 EVTYVGVLSACT 173
++ LSAC
Sbjct: 101 HTSFSTALSACA 112
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 33/165 (20%), Positives = 65/165 (39%), Gaps = 18/165 (10%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F + + +V ++++ Y N G V Q + + LW A+I G + +R A
Sbjct: 127 VFKSCSSGNVFVGASLITMYANCGVVSCLEQVLDGVESPNVALWNALISGLVMNHRVGYA 186
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKD 126
F M N + A+I + +V+ A ++F M K+
Sbjct: 187 RKAFDRMPVRN------------------VVSWTAMIKGHFTAHEVDMAFQLFKLMPVKN 228
Query: 127 KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+W MI G A+++F+ ++ + V V +++A
Sbjct: 229 SVSWCVMIGGFVTHEKFSEAVELFNSLMMNGEEVTNVILVKIVNA 273
>gi|15242278|ref|NP_197038.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180838|sp|Q9LXE8.1|PP386_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g15340, mitochondrial; Flags: Precursor
gi|7671503|emb|CAB89344.1| putative protein [Arabidopsis thaliana]
gi|332004768|gb|AED92151.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 623
Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats.
Identities = 66/198 (33%), Positives = 102/198 (51%), Gaps = 30/198 (15%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
IF ++ K V+SWT ++ + ++ R+ F +MPER+ V WT M+ GYL RE
Sbjct: 168 IFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREV 227
Query: 67 LTLFREM---------------------QTSNIRRDEFTTVRILT--------TFNNDIF 97
L L EM Q+ N+ + V L +D+
Sbjct: 228 LELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVM 287
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
VG AL+DMY KCG+++ + VF M +++ TW A+ GLA+ G G +DMF QM+R
Sbjct: 288 VGTALVDMYAKCGNIDSSMNVFRLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPQMIR-E 346
Query: 158 IRLDEVTYVGVLSACTHN 175
++ D++T+ VLSAC+H+
Sbjct: 347 VKPDDLTFTAVLSACSHS 364
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 82/205 (40%), Gaps = 55/205 (26%)
Query: 26 YINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEF 83
Y + G++ A++ F ++P E+D V WT ++ + R ++ LF EM+ + D+
Sbjct: 53 YASSGEMVTAQKLFDEIPLSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKRVEIDDV 112
Query: 84 TTVRILTTFN---------------------NDIFVGIALIDMYCKCGDVEKAQRVF--- 119
+ V + + V AL+DMY KCG V + +R+F
Sbjct: 113 SVVCLFGVCAKLEDLGFAQQGHGVAVKMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEEL 172
Query: 120 -------W---------------------KMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
W +M ++ WT M+ G +G L++ +
Sbjct: 173 EEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLA 232
Query: 152 QML-RASIRLDEVTYVGVLSACTHN 175
+M+ R L+ VT +LSAC +
Sbjct: 233 EMVFRCGHGLNFVTLCSMLSACAQS 257
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 97 FVGIALIDMYCKCGDVEKAQRVFWK--MLRKDKFTWTAMIVGLAISGHGDTALDMFSQML 154
++ AL Y G++ AQ++F + + KD WT ++ + G ++ +F +M
Sbjct: 44 YLSNALFQFYASSGEMVTAQKLFDEIPLSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMR 103
Query: 155 RASIRLDEVTYVGVLSAC 172
R + +D+V+ V + C
Sbjct: 104 RKRVEIDDVSVVCLFGVC 121
>gi|449467271|ref|XP_004151347.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
gi|449530724|ref|XP_004172343.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
Length = 543
Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats.
Identities = 66/192 (34%), Positives = 105/192 (54%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A IF DV+SW +++ G G++D +R+ F +MP ++ + W +MI GY+R F
Sbjct: 178 ARRIFNQEMEFDVVSWNSMILGLAKCGEIDESRKLFDKMPVKNPISWNSMIGGYVRNGMF 237
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTF------------------NN---DIFVGIAL 102
+EAL LF +MQ I+ EFT V +L NN + V A+
Sbjct: 238 KEALKLFIKMQEERIQPSEFTMVSLLNASAQIGALRQGVWIHEYIKKNNLQLNAIVVTAI 297
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMYCKCG + A +VF K+ + +W +MI GLA++G A+ +F + +S++ D
Sbjct: 298 IDMYCKCGSIGNALQVFEKIPCRSLSSWNSMIFGLAVNGCEKEAILVFKMLESSSLKPDC 357
Query: 163 VTYVGVLSACTH 174
++++ VL+AC H
Sbjct: 358 ISFMAVLTACNH 369
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 46/195 (23%), Positives = 85/195 (43%), Gaps = 26/195 (13%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQM-------PERDYVLWTAM 53
M +A +F M+N ++ SW T++ G+ IA F M P+R + + ++
Sbjct: 73 MDYAYLVFLQMQNPNLFSWNTVIRGFSQSSNPQIALYLFIDMLVSSQVEPQR--LTYPSI 130
Query: 54 IDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIA------------ 101
Y ++ + L + ++ D F IL + F+ A
Sbjct: 131 FKAYSQLGLAHDGAQLHGRIIKLGLQFDPFIRNTILYMYATGGFLSEARRIFNQEMEFDV 190
Query: 102 -----LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156
+I KCG++++++++F KM K+ +W +MI G +G AL +F +M
Sbjct: 191 VSWNSMILGLAKCGEIDESRKLFDKMPVKNPISWNSMIGGYVRNGMFKEALKLFIKMQEE 250
Query: 157 SIRLDEVTYVGVLSA 171
I+ E T V +L+A
Sbjct: 251 RIQPSEFTMVSLLNA 265
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 36/155 (23%), Positives = 69/155 (44%), Gaps = 23/155 (14%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
+ I T I+ Y G + A Q F ++P R W +MI G +EA+ +F+ ++
Sbjct: 290 NAIVVTAIIDMYCKCGSIGNALQVFEKIPCRSLSSWNSMIFGLAVNGCEKEAILVFKMLE 349
Query: 75 TSNIRRDEFTTVRILTTFNNDIFV--GIA--------------------LIDMYCKCGDV 112
+S+++ D + + +LT N+ V G+ ++DM + G +
Sbjct: 350 SSSLKPDCISFMAVLTACNHGAMVDEGMEFFSRMKNTYRIEPSIKHYNLMVDMISRAGFL 409
Query: 113 EKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTA 146
E+A++ M + KD W ++ I G+ + A
Sbjct: 410 EEAEQFIKTMPIEKDAIIWGCLLSACRIYGNTEMA 444
>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 106/188 (56%), Gaps = 24/188 (12%)
Query: 10 NMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVNRFREALT 68
+M +D +SW +I+SGY+ GQV+ AR F +MP R+ V WTAMI+GY + F E L+
Sbjct: 153 DMGFRDEVSWNSIISGYVQWGQVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLS 212
Query: 69 LFREMQTS--NIRRDEFTTVRILTTFNN----------DIFVGI-----------ALIDM 105
LFR+M S ++ + T V +L+ + +F+ + ALIDM
Sbjct: 213 LFRQMLVSADEVQPNAATMVCLLSACSTLCNYEVGRFLSVFIDVNKIPLNTILVTALIDM 272
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y KCGDVEKA R+F + K+ +W A+I G G + A+D++ M S++ +E+T
Sbjct: 273 YSKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITL 332
Query: 166 VGVLSACT 173
V VLSAC
Sbjct: 333 VNVLSACA 340
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 95/177 (53%), Gaps = 21/177 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T ++ Y G V+ A + F + ++ W A+I G ++ EA+ L+R M+ +++
Sbjct: 267 TALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVK 326
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
+E T V +L+ + ++ + AL+DMY KCG ++ A +
Sbjct: 327 PNEITLVNVLSACAGLGALELGREVHLYLGRNGLDLNVILATALVDMYAKCGKIDDACLI 386
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
F K KD W AMI+GLA G G +L +FSQM+RA ++ ++VT++GVLSAC H+
Sbjct: 387 FVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHS 443
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 85/209 (40%), Gaps = 55/209 (26%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T ++ I+ +D AR Q P W ++I Y + +L L+ +M S+ +
Sbjct: 31 THLIPKLIDLHSIDYARFVLDQTPSPTDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTK 90
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKC--------- 109
FT +L F +D+FV +LIDMYCKC
Sbjct: 91 PSNFTFPFVLKACSTLGSVLEGEQIHTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNF 150
Query: 110 ----------------------GDVEKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTA 146
G VEKA+ +F +M +R++ WTAMI G G
Sbjct: 151 WDDMGFRDEVSWNSIISGYVQWGQVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEM 210
Query: 147 LDMFSQMLRAS--IRLDEVTYVGVLSACT 173
L +F QML ++ ++ + T V +LSAC+
Sbjct: 211 LSLFRQMLVSADEVQPNAATMVCLLSACS 239
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 22/163 (13%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
+VI T +V Y G++D A F + E+D LW AMI G R++L +F +M
Sbjct: 363 NVILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMV 422
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT----- 129
+ ++ ++ T + +L+ N+ G VE+ + F M K +
Sbjct: 423 RAGVQPNDVTFIGVLSACNHS--------------GLVEEGRVQFSSMADKHGLSPKLEH 468
Query: 130 WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+ M+ L +GH A ++ ML I D + + +LSAC
Sbjct: 469 YACMVDLLGRAGHLKEAYELVQNML---IPPDSIIWGALLSAC 508
>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Brachypodium distachyon]
Length = 554
Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats.
Identities = 62/194 (31%), Positives = 103/194 (53%), Gaps = 22/194 (11%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A ++F M+ +DV+SW T++S + GQ+ AR F MP++ V WTA++ GY
Sbjct: 171 LARKVFDGMQERDVVSWNTVISAHARLGQMRKARAVFNSMPDKTVVSWTALVSGYTAAGD 230
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIA 101
F A+ FR MQ D+ + V +L + +V A
Sbjct: 231 FSGAVEAFRLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNRHQMLRETYVCNA 290
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR-ASIRL 160
L++MY KCG +++A ++F M KD +W+ M+ GLA G A+ +F++M R +++
Sbjct: 291 LVEMYAKCGCIDQALQLFNGMAEKDVISWSTMVGGLAAHGRAQEAVQLFTEMERQGTVKP 350
Query: 161 DEVTYVGVLSACTH 174
+ +T+VG+LSAC+H
Sbjct: 351 NGITFVGLLSACSH 364
>gi|356545987|ref|XP_003541414.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 613
Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats.
Identities = 73/192 (38%), Positives = 102/192 (53%), Gaps = 26/192 (13%)
Query: 9 GNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALT 68
GN K+ V +WT++VS Y RG+V++AR+ F QM ERD V WTAMI GY F+EAL
Sbjct: 244 GNGKS-GVAAWTSLVSAYALRGEVEVARRLFDQMGERDVVSWTAMISGYCHAGCFQEALE 302
Query: 69 LFREMQTSNIRRDEFTTV----------------RILTTFNNDIF-------VGIALIDM 105
LF E++ + DE V RI ++ D + A++DM
Sbjct: 303 LFVELEDLGMEPDEVVVVAALSACARLGALELGRRIHHKYDRDSWQCGHNRGFTCAVVDM 362
Query: 106 YCKCGDVEKAQRVFWKML--RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEV 163
Y KCG +E A VF K K F + +++ GLA G G+ A+ +F +M + DEV
Sbjct: 363 YAKCGSIEAALDVFLKTSDDMKTTFLYNSIMSGLAHHGRGEHAMALFEEMRLVGLEPDEV 422
Query: 164 TYVGVLSACTHN 175
TYV +L AC H+
Sbjct: 423 TYVALLCACGHS 434
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 57/222 (25%), Positives = 92/222 (41%), Gaps = 57/222 (25%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F + +V ++ Y G A + F + P RD V + +I+G +R R +
Sbjct: 106 VFKSGFESNVFVVNALLQVYFVFGDARNACRVFDESPVRDSVSYNTVINGLVRAGRAGCS 165
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFN------------------------NDIFVGIAL 102
+ +F EM+ + DE+T V +L+ + N++ V AL
Sbjct: 166 MRIFAEMRGGFVEPDEYTFVALLSACSLLEDRGIGRVVHGLVYRKLGCFGENELLVN-AL 224
Query: 103 IDMYCKC--------------------------------GDVEKAQRVFWKMLRKDKFTW 130
+DMY KC G+VE A+R+F +M +D +W
Sbjct: 225 VDMYAKCGCLEVAERVVRNGNGKSGVAAWTSLVSAYALRGEVEVARRLFDQMGERDVVSW 284
Query: 131 TAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
TAMI G +G AL++F ++ + DEV V LSAC
Sbjct: 285 TAMISGYCHAGCFQEALELFVELEDLGMEPDEVVVVAALSAC 326
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 23/158 (14%)
Query: 39 FAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN--IRRDEFTTVRILTT----- 91
F Q+P D L+ +I + AL+L+++M +S+ I D FT +L +
Sbjct: 35 FTQIPNPDLFLFNLIIRAFSLSQTPHNALSLYKKMLSSSPPIFPDTFTFPFLLKSCAKLS 94
Query: 92 ----------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIV 135
F +++FV AL+ +Y GD A RVF + +D ++ +I
Sbjct: 95 LPRLGLQVHTHVFKSGFESNVFVVNALLQVYFVFGDARNACRVFDESPVRDSVSYNTVIN 154
Query: 136 GLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
GL +G ++ +F++M + DE T+V +LSAC+
Sbjct: 155 GLVRAGRAGCSMRIFAEMRGGFVEPDEYTFVALLSACS 192
>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 108/196 (55%), Gaps = 27/196 (13%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ A ++F M +KD ++ T+++ Y + A + F MPE+D V W ++I+G+
Sbjct: 31 LNLACKLFDEMPHKDTVTLDTMITAYF-----ESAYKVFELMPEKDIVAWNSVINGFALN 85
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
+ EALTL++ M + + D FT V +L+ N ++
Sbjct: 86 GKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAELATLVLGRRAHVYMVKVGLNKNLHAN 145
Query: 100 IALIDMYCKCGDVEKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
AL+D+Y KCG + +A+++F +M + ++ +WT++IVGLA++G G AL+ F M R +
Sbjct: 146 NALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAVNGFGKEALEHFKDMEREGL 205
Query: 159 RLDEVTYVGVLSACTH 174
E+T+VGVL AC+H
Sbjct: 206 VPSEITFVGVLYACSH 221
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 28/105 (26%)
Query: 97 FVGIALIDMYCKC--GDV--------------------------EKAQRVFWKMLRKDKF 128
+V ++ Y KC GD+ E A +VF M KD
Sbjct: 14 YVANNILSRYSKCVVGDLNLACKLFDEMPHKDTVTLDTMITAYFESAYKVFELMPEKDIV 73
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
W ++I G A++G + AL ++ +M + D T V +LSAC
Sbjct: 74 AWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACA 118
>gi|357498695|ref|XP_003619636.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494651|gb|AES75854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 403
Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 101/175 (57%), Gaps = 2/175 (1%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +F + ++D+ SW T++ Y+ G + A+ F +M ERD V W+ +I GY++V
Sbjct: 1 MDDARNVFDSAIDRDLYSWNTMIGVYVGSGNMIQAKNLFDEMHERDVVSWSTIIAGYVQV 60
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
F E L F M S ++ +E+T V L ND + +LIDMY KCG+++ A VF
Sbjct: 61 GCFMEDLEFFHNMLQSEVKPNEYTMVSALAIKMNDRLLA-SLIDMYAKCGEIDSASSVFH 119
Query: 121 KMLRKDK-FTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+ K K + W AMI G A+ G + A+ +F QM + ++VT++ +L+AC+H
Sbjct: 120 EHKVKRKVWPWNAMIGGFAMHGKPEEAISLFEQMKVERVSPNKVTFIALLNACSH 174
>gi|116310106|emb|CAH67125.1| H0315E07.3 [Oryza sativa Indica Group]
gi|222628896|gb|EEE61028.1| hypothetical protein OsJ_14863 [Oryza sativa Japonica Group]
Length = 655
Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 98/192 (51%), Gaps = 25/192 (13%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
AL++F M ++D ISW I+ GY+ +G +D A +F + P +D + W +I GY +
Sbjct: 301 ALKLFSEMPDRDQISWNAILQGYVQQGDMDSANAWFRRAPNKDAISWNTLISGY----KD 356
Query: 64 REALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIAL 102
AL+L EM ++ D+ T ++ T F +D V +L
Sbjct: 357 EGALSLLSEMIRGGLKPDQATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSL 416
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I MY KCG + +A +VF +L++D TW AMI A G D AL +F M +A R D
Sbjct: 417 ISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFRPDH 476
Query: 163 VTYVGVLSACTH 174
T++ +LSAC H
Sbjct: 477 ATFLSILSACAH 488
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 88/173 (50%), Gaps = 22/173 (12%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
MG A +F M KDV+S T I+ GY+ G VD A + F MP RD V W M+DG++R
Sbjct: 236 MGIAQRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRN 295
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
+R +AL LF EM RD+ ++N A++ Y + GD++ A F
Sbjct: 296 DRLDDALKLFSEMPD----RDQI-------SWN-------AILQGYVQQGDMDSANAWFR 337
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+ KD +W +I G G AL + S+M+R ++ D+ T V+S C
Sbjct: 338 RAPNKDAISWNTLISGYKDEG----ALSLLSEMIRGGLKPDQATLSVVISICA 386
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 73/150 (48%), Gaps = 18/150 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F + +++V+SW +VSGY G V AR+ F MP RD V W MI GY++
Sbjct: 115 ARELFNRIPDRNVVSWNAMVSGYARNGMVKRARELFDMMPWRDDVSWLTMISGYIKRKHV 174
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
REA LF M + T+ N AL+ Y + G + A+ +F +M
Sbjct: 175 REARELFDSMPSPP------------TSVCN------ALLSGYVELGYMRAAEVLFGQMQ 216
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
++ +W MI G A +G A +F +M
Sbjct: 217 TRNPVSWNVMITGYARAGSMGIAQRLFDEM 246
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 18/146 (12%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 67
F M ++V +W +VSG I + AR+ F MP R+ V W A++ GY R R EA
Sbjct: 57 FDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMPVRNSVSWAALLTGYARCGRVAEAR 116
Query: 68 TLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDK 127
LF + N+ ++N A++ Y + G V++A+ +F M +D
Sbjct: 117 ELFNRIPDRNV-----------VSWN-------AMVSGYARNGMVKRARELFDMMPWRDD 158
Query: 128 FTWTAMIVGLAISGHGDTALDMFSQM 153
+W MI G H A ++F M
Sbjct: 159 VSWLTMISGYIKRKHVREARELFDSM 184
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 69/181 (38%), Gaps = 49/181 (27%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE------------------- 44
A E+F M +D +SW T++SGYI R V AR+ F MP
Sbjct: 146 ARELFDMMPWRDDVSWLTMISGYIKRKHVREARELFDSMPSPPTSVCNALLSGYVELGYM 205
Query: 45 ------------RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTF 92
R+ V W MI GY R A LF EM
Sbjct: 206 RAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMP------------------ 247
Query: 93 NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
D+ A++ Y + G V+ A +VF M +D W M+ G + D AL +FS+
Sbjct: 248 EKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSE 307
Query: 153 M 153
M
Sbjct: 308 M 308
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 18/139 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV T ++ + G+V AR+ F +M ER+ W M+ G +R EA +F M
Sbjct: 33 DVFQSNTAINEHFRAGRVAAARRVFDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMP 92
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
N AL+ Y +CG V +A+ +F ++ ++ +W AM+
Sbjct: 93 VRN------------------SVSWAALLTGYARCGRVAEARELFNRIPDRNVVSWNAMV 134
Query: 135 VGLAISGHGDTALDMFSQM 153
G A +G A ++F M
Sbjct: 135 SGYARNGMVKRARELFDMM 153
>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Brachypodium distachyon]
Length = 804
Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats.
Identities = 64/195 (32%), Positives = 100/195 (51%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ A +IF +M KDV+SW TI+SGYI G +D A + F +MP + + W M+ GY+
Sbjct: 351 IAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHG 410
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
+AL LF +M++ +++ ++T + F G
Sbjct: 411 GLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAG 470
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+ MY +CG V+ A+ VF M D +W AMI L GHG AL++F QM+ I
Sbjct: 471 NALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIY 530
Query: 160 LDEVTYVGVLSACTH 174
D ++++ +L+AC H
Sbjct: 531 PDRISFLTILTACNH 545
Score = 92.8 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 61/225 (27%), Positives = 93/225 (41%), Gaps = 56/225 (24%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++ M KD ++WTTIV G++ +G V AR F ++ V+W AMI GY++
Sbjct: 218 ARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMC 277
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIF-------------------------V 98
EA LFR M + I DEFT +L+ N F V
Sbjct: 278 AEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPV 337
Query: 99 GIALIDMYCKCGDV-------------------------------EKAQRVFWKMLRKDK 127
AL+ +Y K G + + A R+F +M K +
Sbjct: 338 NNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSE 397
Query: 128 FTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+W M+ G G + AL +F+QM ++ + TY G ++AC
Sbjct: 398 LSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAAC 442
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 55/219 (25%), Positives = 90/219 (41%), Gaps = 61/219 (27%)
Query: 17 ISWTTIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
++ T++VS Y G++ + +F +P RD VL AMI + R + A+++FR +
Sbjct: 90 VAATSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLL 149
Query: 75 TSN--IRRDEFTTVRILTTFNND-----------------------IFVGIALIDMYCKC 109
S+ +R D+++ +L+ + V ALI +Y KC
Sbjct: 150 ASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKC 209
Query: 110 ---GDVEKAQRVFWKMLRKDKFTWT-------------------------------AMIV 135
G A++V +M KD+ TWT AMI
Sbjct: 210 DAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMIS 269
Query: 136 GLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
G SG A ++F +M+ I DE T+ +LSAC +
Sbjct: 270 GYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACAN 308
>gi|255594521|ref|XP_002536106.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223520840|gb|EEF26277.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 519
Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 98/182 (53%), Gaps = 22/182 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
+VI++T ++ GY+ G + AR F + + D V WTAMI GY++ +A+ LFR M
Sbjct: 271 NVIAFTALLDGYVKLGNITPARHIFDSLKDSDVVAWTAMIVGYVQNGLNDDAMELFRIMA 330
Query: 75 TSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVE 113
R + FT +L+ +N + VG ALI MY K G +
Sbjct: 331 KEGPRPNSFTLAAMLSVSSNVASLNHGKQIHASAIRSGENLSVSVGNALITMYAKAGSIT 390
Query: 114 KAQRVFWKMLR-KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
AQ+VF + R KD +WT+MI+ L G G ++++F +ML I+ D +TYVGVLSAC
Sbjct: 391 DAQQVFNLIQRNKDTVSWTSMIIALGQHGLGQESIELFEKMLALGIKPDHITYVGVLSAC 450
Query: 173 TH 174
TH
Sbjct: 451 TH 452
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 91/216 (42%), Gaps = 52/216 (24%)
Query: 11 MKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 70
M K SW TI++GY G + A F ++P+RD V WT MI GY ++ RF A+ +F
Sbjct: 1 MPVKTTFSWNTILTGYAKLGTLAKAHSVFDEIPDRDSVSWTTMIVGYNQMGRFESAIKMF 60
Query: 71 REMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKC 109
M + +FT + + + + V +L++MY K
Sbjct: 61 VAMMKDKVLPTQFTVTNVFASCAALGALDIGKKIHSFVIKLGLSGCVPVANSLLNMYAKA 120
Query: 110 GDVEKAQRVF----------W---------------------KMLRKDKFTWTAMIVGLA 138
GD A+ VF W +M +D TW +MI G +
Sbjct: 121 GDSVMAKIVFDRMRLRSISSWNIMISLHMHGGRADLALAQFEQMSERDVVTWNSMITGYS 180
Query: 139 ISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
G AL++FS+ML S++ D T +LSAC +
Sbjct: 181 QHGFDKEALELFSRMLEDSLKPDRFTLASILSACAN 216
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 92/222 (41%), Gaps = 54/222 (24%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M+ + + SW ++S +++ G+ D+A F QM ERD V W +MI GY + +EA
Sbjct: 129 VFDRMRLRSISSWNIMISLHMHGGRADLALAQFEQMSERDVVTWNSMITGYSQHGFDKEA 188
Query: 67 LTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIALIDM 105
L LF M +++ D FT IL T F+ V ALI M
Sbjct: 189 LELFSRMLEDSLKPDRFTLASILSACANIENLNLGKQIHSYIIRTEFDISGVVQNALISM 248
Query: 106 YCKCGDVEKAQ---------------------------------RVFWKMLRKDKFTWTA 132
Y K G VE AQ +F + D WTA
Sbjct: 249 YAKTGGVEIAQSIVEQSGISDLNVIAFTALLDGYVKLGNITPARHIFDSLKDSDVVAWTA 308
Query: 133 MIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
MIVG +G D A+++F M + R + T +LS ++
Sbjct: 309 MIVGYVQNGLNDDAMELFRIMAKEGPRPNSFTLAAMLSVSSN 350
>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
Length = 566
Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 108/192 (56%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F NMK +++++ +++ Y + AR+ F Q+P++D + W++MI GY + N F
Sbjct: 242 AEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHF 301
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTF------------------NN---DIFVGIAL 102
+AL +FR+MQ + ++ D ++++ NN D + +L
Sbjct: 302 SDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSL 361
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG ++A +VF +M KD +W ++I+GLA +G +L++F ML R +
Sbjct: 362 IDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPNG 421
Query: 163 VTYVGVLSACTH 174
VT++GVL AC +
Sbjct: 422 VTFLGVLIACAN 433
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 96/212 (45%), Gaps = 52/212 (24%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ +++ Y G + AR F +M +D V W ++I GY + NRF++ L LF+ MQ
Sbjct: 121 DIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQ 180
Query: 75 TSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVE 113
++ D+ T +++++ D+++G L+D + + G ++
Sbjct: 181 NEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQ 240
Query: 114 KAQRVFWKM-------------------------------LRKDKFTWTAMIVGLAISGH 142
A++VF+ M +KD +W++MI G + + H
Sbjct: 241 SAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANH 300
Query: 143 GDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
AL++F QM RA ++ D + V+S+C H
Sbjct: 301 FSDALEIFRQMQRAKVKPDAIVIASVVSSCAH 332
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 21/160 (13%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT--- 91
A + F Q+ LW +I G + + +A+ +++ Q + D T IL
Sbjct: 40 AHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACAR 99
Query: 92 ------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
+DIFV +LI +Y CG++ A+ VF +M+ KD +W ++
Sbjct: 100 INALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSL 159
Query: 134 IVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
I G + L +F M ++ D+VT + V+SACT
Sbjct: 160 ICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACT 199
>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
Length = 802
Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats.
Identities = 64/196 (32%), Positives = 100/196 (51%), Gaps = 21/196 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ A IF NM KDV+SW TI+SGY+ +D A + F +MP ++ + W M+ GY+
Sbjct: 349 IAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHG 408
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
+AL LF +M++ N++ ++T + F G
Sbjct: 409 GFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAG 468
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALI MY +CG V++A +F M D +W AMI L GHG AL++F +M+ I
Sbjct: 469 NALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIY 528
Query: 160 LDEVTYVGVLSACTHN 175
D ++++ VL+AC H+
Sbjct: 529 PDRISFLTVLTACNHS 544
Score = 98.6 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 62/225 (27%), Positives = 95/225 (42%), Gaps = 56/225 (24%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++ M NKD ++WTT+V GY+ RG V AR F ++ + V+W AMI GY+
Sbjct: 216 ARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMA 275
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN-------------------------DIFV 98
EA LFR M + DEFT +L+ N + V
Sbjct: 276 VEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPV 335
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKD-------------------------------K 127
AL+ Y KCG++ A+R+F M KD +
Sbjct: 336 NNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNE 395
Query: 128 FTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+W M+ G G + AL +F++M +++ + TY G ++AC
Sbjct: 396 LSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAAC 440
Score = 62.4 bits (150), Expect = 7e-08, Method: Composition-based stats.
Identities = 55/218 (25%), Positives = 92/218 (42%), Gaps = 60/218 (27%)
Query: 17 ISWTTIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
+S T++V+ Y ++ A +F +P RD VL A+I Y R + A+ +FR +
Sbjct: 89 VSATSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLL 148
Query: 75 TS-NIRRDEFTTVRILTTFNN-----------------------DIFVGIALIDMYCKCG 110
S ++R D+++ +L+ + + V AL+ +Y KC
Sbjct: 149 ASGSLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCE 208
Query: 111 DVE---KAQRVFWKMLRKDKFTWTAMIVGLA--------------------------ISG 141
E A++V +M KD TWT M+VG ISG
Sbjct: 209 SPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISG 268
Query: 142 HGDT-----ALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+ + A ++F +M+ + LDE T+ VLSAC +
Sbjct: 269 YVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACAN 306
>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Glycine max]
Length = 693
Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats.
Identities = 67/183 (36%), Positives = 95/183 (51%), Gaps = 21/183 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
N D + W+ ++ Y G +D AR F QM +RD V WT MI R E LFR+
Sbjct: 252 NLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRD 311
Query: 73 MQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGD 111
+ S +R +E+T +L ++ F AL+ MY KCG+
Sbjct: 312 LMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGN 371
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
A+RVF +M + D +WT++IVG A +G D AL F +L++ + D+VTYVGVLSA
Sbjct: 372 TRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSA 431
Query: 172 CTH 174
CTH
Sbjct: 432 CTH 434
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 63/188 (33%), Positives = 99/188 (52%), Gaps = 22/188 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M ++D+ SW T++ GY G+++ AR+ F +MP+RD W A I GY+ N+ REA
Sbjct: 144 LFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREA 203
Query: 67 LTLFREMQT-SNIRRDEFTTVR---------------------ILTTFNNDIFVGIALID 104
L LFR MQ ++FT I T N D V AL+D
Sbjct: 204 LELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLD 263
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVT 164
+Y KCG +++A+ +F +M +D +WT MI G + +F ++++ +R +E T
Sbjct: 264 LYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYT 323
Query: 165 YVGVLSAC 172
+ GVL+AC
Sbjct: 324 FAGVLNAC 331
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 90 TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDM 149
+ F +F+ L+DMY KCG + AQ +F +M +D +W MIVG A G + A +
Sbjct: 116 SNFVPGVFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKL 175
Query: 150 FSQM 153
F +M
Sbjct: 176 FDEM 179
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 33/148 (22%), Positives = 66/148 (44%), Gaps = 18/148 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYLR 59
A +F M D++SWT+++ GY GQ D A +F + + D V + ++
Sbjct: 375 ARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTH 434
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119
+ L F ++ + ++ T ++ V ID+ + G ++A+ +
Sbjct: 435 AGLVDKGLEYFHSIKEKH---------GLMHTADHYACV----IDLLARSGRFKEAENII 481
Query: 120 WKM-LRKDKFTWTAMIVGLAISGHGDTA 146
M ++ DKF W +++ G I G+ + A
Sbjct: 482 DNMPVKPDKFLWASLLGGCRIHGNLELA 509
>gi|125548358|gb|EAY94180.1| hypothetical protein OsI_15952 [Oryza sativa Indica Group]
Length = 655
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 98/192 (51%), Gaps = 25/192 (13%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
AL++F M ++D ISW I+ GY+ +G +D A +F + P +D + W +I GY +
Sbjct: 301 ALKLFSEMPDRDQISWHAILQGYVQQGDMDSANVWFPRAPNKDAISWNTLISGY----KD 356
Query: 64 REALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIAL 102
AL+L EM ++ D+ T ++ T F +D V +L
Sbjct: 357 EGALSLLSEMIRGGLKPDQATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSL 416
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I MY KCG + +A +VF +L++D TW AMI A G D AL +F M +A R D
Sbjct: 417 ISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFRPDH 476
Query: 163 VTYVGVLSACTH 174
T++ +LSAC H
Sbjct: 477 ATFLSILSACAH 488
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 85/173 (49%), Gaps = 22/173 (12%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
MG A +F M KDV+S T I+ GY+ G VD A + F MP RD V W M+DG++R
Sbjct: 236 MGIAQRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRN 295
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
+R +AL LF EM RD+ + IL Y + GD++ A F
Sbjct: 296 DRLDDALKLFSEMPD----RDQISWHAILQG--------------YVQQGDMDSANVWFP 337
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+ KD +W +I G G AL + S+M+R ++ D+ T V+S C
Sbjct: 338 RAPNKDAISWNTLISGYKDEG----ALSLLSEMIRGGLKPDQATLSVVISICA 386
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 73/150 (48%), Gaps = 18/150 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F + +++V+SW +VSGY G V AR+ F MP RD V W MI GY++
Sbjct: 115 ARELFNRIPDRNVVSWNAMVSGYARNGMVKRARELFDMMPWRDDVSWLTMISGYIKRKHV 174
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
REA LF M + T+ N AL+ Y + G + A+ +F +M
Sbjct: 175 REARELFDSMPSPP------------TSVCN------ALLSGYVELGYMRAAEVLFGQMQ 216
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
++ +W MI G A +G A +F +M
Sbjct: 217 TRNPVSWNVMITGYARAGSMGIAQRLFDEM 246
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 18/146 (12%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 67
F M ++V +W +VSG I + AR+ F MP R+ V W A++ GY R R EA
Sbjct: 57 FDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMPVRNSVSWAALLTGYARCGRVAEAR 116
Query: 68 TLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDK 127
LF + N+ ++N A++ Y + G V++A+ +F M +D
Sbjct: 117 ELFNRIPDRNV-----------VSWN-------AMVSGYARNGMVKRARELFDMMPWRDD 158
Query: 128 FTWTAMIVGLAISGHGDTALDMFSQM 153
+W MI G H A ++F M
Sbjct: 159 VSWLTMISGYIKRKHVREARELFDSM 184
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 69/181 (38%), Gaps = 49/181 (27%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE------------------- 44
A E+F M +D +SW T++SGYI R V AR+ F MP
Sbjct: 146 ARELFDMMPWRDDVSWLTMISGYIKRKHVREARELFDSMPSPPTSVCNALLSGYVELGYM 205
Query: 45 ------------RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTF 92
R+ V W MI GY R A LF EM
Sbjct: 206 RAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMP------------------ 247
Query: 93 NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
D+ A++ Y + G V+ A +VF M +D W M+ G + D AL +FS+
Sbjct: 248 EKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSE 307
Query: 153 M 153
M
Sbjct: 308 M 308
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 18/139 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV T ++ + G+V AR+ F +M ER+ W M+ G +R EA +F M
Sbjct: 33 DVFQSNTAINEHFRAGRVAAARRVFDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMP 92
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
N AL+ Y +CG V +A+ +F ++ ++ +W AM+
Sbjct: 93 VRN------------------SVSWAALLTGYARCGRVAEARELFNRIPDRNVVSWNAMV 134
Query: 135 VGLAISGHGDTALDMFSQM 153
G A +G A ++F M
Sbjct: 135 SGYARNGMVKRARELFDMM 153
>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 816
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 99/182 (54%), Gaps = 21/182 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV +++S Y +VDIA F + + V W AMI GY + EAL LF EMQ
Sbjct: 378 DVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQ 437
Query: 75 TSNIRRDEFTTVRILTTF---------------------NNDIFVGIALIDMYCKCGDVE 113
+ +I+ D FT V ++T + ++FV ALID + KCG ++
Sbjct: 438 SHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQ 497
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
A+++F M + TW AMI G +GHG ALD+F++M S++ +E+T++ V++AC+
Sbjct: 498 TARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACS 557
Query: 174 HN 175
H+
Sbjct: 558 HS 559
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 21/180 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
++ + T +V+ Y Q++ A + F +MP+RD V W ++ GY + R A+ + +MQ
Sbjct: 176 NLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQ 235
Query: 75 TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVE 113
+ + D T V +L F + V A++D Y KCG V
Sbjct: 236 EAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVR 295
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
A+ VF M ++ +W MI G A +G + A F +ML + V+ +G L AC
Sbjct: 296 SARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACA 355
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 78/173 (45%), Gaps = 21/173 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI- 78
T ++S + + A + F + + VL+ M+ GY + + R+A+ + M+ +
Sbjct: 80 TKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVM 139
Query: 79 --------------------RRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
R E + I F +++F A++++Y KC +E A ++
Sbjct: 140 PVVYDFTYLLQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKM 199
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
F +M ++D +W ++ G A +G A+ + QM A + D +T V VL A
Sbjct: 200 FERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPA 252
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+K+V T ++ + G + AR+ F M ER + W AMIDGY REAL LF E
Sbjct: 477 DKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNE 536
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFV 98
MQ +++ +E T + ++ ++ V
Sbjct: 537 MQNGSVKPNEITFLSVIAACSHSGLV 562
>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
Length = 635
Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats.
Identities = 70/183 (38%), Positives = 91/183 (49%), Gaps = 21/183 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ D + W+ + Y G+VD AR F +MP RD V WTAM++ Y R E LF
Sbjct: 194 DADAVVWSALADMYAKCGRVDDARSVFDRMPVRDVVSWTAMVERYFDARRDGEGFRLFVR 253
Query: 73 MQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIALIDMYCKCGD 111
M S I+ +EFT +L + + F AL+ MY K GD
Sbjct: 254 MLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHGRMTKSRAGDSCFAESALVHMYSKYGD 313
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+ A RVF M + D +WTAMI G A +G D AL F +LR+ R D VT+VGVLSA
Sbjct: 314 MGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYFDMLLRSGCRPDHVTFVGVLSA 373
Query: 172 CTH 174
C H
Sbjct: 374 CAH 376
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 62/195 (31%), Positives = 93/195 (47%), Gaps = 27/195 (13%)
Query: 4 ALEIFGNMKNKDVISWTTIVS--GYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVN 61
AL + ++ + DV S+ T+V+ G RG AR F +MP RD+ W+A++ + R
Sbjct: 80 ALALLSSLPSTDVCSYNTLVAALGRSPRGLAS-ARALFDRMPRRDHFSWSAIVSAHARHG 138
Query: 62 RFREALTLFREM---QTSNIRRDEFTTVR---------------------ILTTFNNDIF 97
+ R AL ++R M S +EFT + + D
Sbjct: 139 QPRAALAIYRRMLREPGSAGVDNEFTASSALAAATAARCARAGRELHCHVVRRGIDADAV 198
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
V AL DMY KCG V+ A+ VF +M +D +WTAM+ + +F +MLR+
Sbjct: 199 VWSALADMYAKCGRVDDARSVFDRMPVRDVVSWTAMVERYFDARRDGEGFRLFVRMLRSG 258
Query: 158 IRLDEVTYVGVLSAC 172
I+ +E TY GVL AC
Sbjct: 259 IQPNEFTYAGVLRAC 273
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 18/144 (12%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDG 56
MG A+ +F M D++SWT ++SGY GQ D A +YF + D+V + ++
Sbjct: 314 MGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYFDMLLRSGCRPDHVTFVGVLSA 373
Query: 57 YLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQ 116
+ L++F + +DE+ + +ID+ + G E+A+
Sbjct: 374 CAHAGLVDKGLSIFHSI------KDEYGIEHTADHY-------ACVIDLLSRSGLFERAE 420
Query: 117 RVFWKM-LRKDKFTWTAMIVGLAI 139
+ M ++ +KF W +++ G I
Sbjct: 421 EMINTMSVKPNKFLWASLLGGCRI 444
>gi|115473893|ref|NP_001060545.1| Os07g0662700 [Oryza sativa Japonica Group]
gi|24414187|dbj|BAC22429.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113612081|dbj|BAF22459.1| Os07g0662700 [Oryza sativa Japonica Group]
gi|125559498|gb|EAZ05034.1| hypothetical protein OsI_27217 [Oryza sativa Indica Group]
gi|125601406|gb|EAZ40982.1| hypothetical protein OsJ_25464 [Oryza sativa Japonica Group]
Length = 544
Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats.
Identities = 75/195 (38%), Positives = 102/195 (52%), Gaps = 24/195 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F + + ++WT++V+G G V AR+ F +MP RD V W AM+ G R
Sbjct: 94 ARRLFERVPSPTPVTWTSMVAGLCRAGDVAAARRLFEEMPVRDLVSWNAMMSGLAGNRRP 153
Query: 64 REALTLFREMQTSNIRRDEFT---------------TVRILTTFNN--------DIFVGI 100
EAL LFR M + T T + + F D F+G
Sbjct: 154 VEALCLFRRMMAEGFAPNRGTVLSALAACAGAGALETGKWIHAFVERKRLFRWWDEFLGT 213
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM-LRASIR 159
AL+DMY KCG VE A VF K+ ++ TW AMI GLA++G+ ALDMF +M L ++
Sbjct: 214 ALLDMYAKCGAVELALDVFTKLRSRNTCTWNAMINGLAMNGYSAKALDMFRKMELDRTVV 273
Query: 160 LDEVTYVGVLSACTH 174
DEVT+VGVL AC+H
Sbjct: 274 PDEVTFVGVLLACSH 288
>gi|449434194|ref|XP_004134881.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 436
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 97/191 (50%), Gaps = 23/191 (12%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M +K+ ++W T++SGY G V ARQ F +MP RD W+AMI Y+ +R A
Sbjct: 112 VFDEMPHKNSVTWNTMISGYSKAGDVHTARQLFDRMPSRDLASWSAMIAAYINNRNYRGA 171
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNN-----------------------DIFVGIALI 103
L LF++M + I D+ IL + ++ +G L+
Sbjct: 172 LLLFQDMIINGINPDQMAAGSILNGCAHMGSLGLLAGKSVHGFVVKNRWELNLELGTVLV 231
Query: 104 DMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEV 163
DMY KCG ++ A ++F M ++ TWTA+I GLA G AL +F M + +E
Sbjct: 232 DMYAKCGFLKYACQIFNLMSERNVRTWTALICGLAHHGCCKEALVLFETMRHEGVEPNEF 291
Query: 164 TYVGVLSACTH 174
T+ GVLSAC H
Sbjct: 292 TFTGVLSACVH 302
>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 804
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 98/182 (53%), Gaps = 22/182 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
+VIS+T ++ GY+ G ++ AR+ F M RD V WTAMI GY + R EA+ LFR M
Sbjct: 364 NVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMI 423
Query: 75 TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVE 113
T + +T +L+ V A+I MY + G
Sbjct: 424 TCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFP 483
Query: 114 KAQRVFWKML-RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
A+R+F ++ RK+ TWT+MIV LA G G+ A+ +F +MLRA + D +TYVGVLSAC
Sbjct: 484 WARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSAC 543
Query: 173 TH 174
+H
Sbjct: 544 SH 545
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 92/225 (40%), Gaps = 55/225 (24%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M + V SW +VS + G++D+A F MP+R V W AMI GY +
Sbjct: 218 ATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLD 277
Query: 64 REALTLF-REMQTSNIRRDEFTTVRILTTFNN--DIFVGI-------------------A 101
+AL LF R + S++ DEFT +L+ N ++ +G A
Sbjct: 278 AKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNA 337
Query: 102 LIDMYCKCGDVEKAQRV---------------------------------FWKMLRKDKF 128
LI Y K G VE A+R+ F M +D
Sbjct: 338 LISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVV 397
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
WTAMIVG +G D A+D+F M+ + T VLS C
Sbjct: 398 AWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCA 442
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 95/217 (43%), Gaps = 53/217 (24%)
Query: 11 MKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 70
+ ++V +W +++S + G++ AR FA+MPERD V WT M+ G R RF EA+
Sbjct: 93 LARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTL 152
Query: 71 REMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKC 109
+M +FT +L++ + + V ++++MY KC
Sbjct: 153 LDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKC 212
Query: 110 GDVEKAQRVFWKM----------------------LRKDKF---------TWTAMIVGLA 138
GD E A VF +M L + F +W AMI G
Sbjct: 213 GDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYN 272
Query: 139 ISGHGDTALDMFSQMLR-ASIRLDEVTYVGVLSACTH 174
+G AL +FS+ML +S+ DE T VLSAC +
Sbjct: 273 QNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACAN 309
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 24/150 (16%)
Query: 21 TIVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
I++ Y G AR+ F Q+ ++ + WT+MI + + EA+ LF EM + +
Sbjct: 471 AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVE 530
Query: 80 RDEFTTVRILTTFNNDIFVG----------------------IALIDMYCKCGDVEKAQR 117
D T V +L+ ++ FV ++D+ + G +AQ
Sbjct: 531 PDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQE 590
Query: 118 VFWKM-LRKDKFTWTAMIVGLAISGHGDTA 146
+M + D W +++ + + + A
Sbjct: 591 FIRRMPVEPDAIAWGSLLSACRVHKNAELA 620
>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
Length = 444
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 99/185 (53%), Gaps = 21/185 (11%)
Query: 11 MKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 70
M K ++S T +++ Y G +D AR F + ERD + W MIDGY + E L LF
Sbjct: 1 MPEKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLF 60
Query: 71 REMQTSNIRRDEFTTVRILTTF-----------------NN----DIFVGIALIDMYCKC 109
R+M + +R +E T + +L+ NN ++ VG +LIDMY KC
Sbjct: 61 RQMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKC 120
Query: 110 GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVL 169
G +E A+ VF ++ KD W +M+VG A+ G AL +F +M + ++T++GVL
Sbjct: 121 GSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVL 180
Query: 170 SACTH 174
+AC+H
Sbjct: 181 NACSH 185
>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
Length = 698
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 98/182 (53%), Gaps = 22/182 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
+VIS+T ++ GY+ G ++ AR+ F M RD V WTAMI GY + R EA+ LFR M
Sbjct: 258 NVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMI 317
Query: 75 TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVE 113
T + +T +L+ V A+I MY + G
Sbjct: 318 TCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFP 377
Query: 114 KAQRVFWKML-RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
A+R+F ++ RK+ TWT+MIV LA G G+ A+ +F +MLRA + D +TYVGVLSAC
Sbjct: 378 WARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSAC 437
Query: 173 TH 174
+H
Sbjct: 438 SH 439
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 92/225 (40%), Gaps = 55/225 (24%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M + V SW +VS + G++D+A F MP+R V W AMI GY +
Sbjct: 112 ATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLD 171
Query: 64 REALTLF-REMQTSNIRRDEFTTVRILTTFNN--DIFVGI-------------------A 101
+AL LF R + S++ DEFT +L+ N ++ +G A
Sbjct: 172 AKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNA 231
Query: 102 LIDMYCKCGDVEKAQRV---------------------------------FWKMLRKDKF 128
LI Y K G VE A+R+ F M +D
Sbjct: 232 LISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVV 291
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
WTAMIVG +G D A+D+F M+ + T VLS C
Sbjct: 292 AWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCA 336
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 85/202 (42%), Gaps = 53/202 (26%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT 85
+ G++ AR FA+MPERD V WT M+ G R RF EA+ +M +FT
Sbjct: 2 FAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTL 61
Query: 86 VRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKM-- 122
+L++ + + V ++++MY KCGD E A VF +M
Sbjct: 62 TNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPV 121
Query: 123 --------------------LRKDKF---------TWTAMIVGLAISGHGDTALDMFSQM 153
L + F +W AMI G +G AL +FS+M
Sbjct: 122 RSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRM 181
Query: 154 LR-ASIRLDEVTYVGVLSACTH 174
L +S+ DE T VLSAC +
Sbjct: 182 LHESSMAPDEFTITSVLSACAN 203
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%)
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVT 164
M+ K G + A+ VF +M +D +WT M+VGL +G A+ M + T
Sbjct: 1 MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60
Query: 165 YVGVLSACT 173
VLS+C
Sbjct: 61 LTNVLSSCA 69
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 24/150 (16%)
Query: 21 TIVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
I++ Y G AR+ F Q+ ++ + WT+MI + + EA+ LF EM + +
Sbjct: 365 AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVE 424
Query: 80 RDEFTTVRILTTFNNDIFVG----------------------IALIDMYCKCGDVEKAQR 117
D T V +L+ ++ FV ++D+ + G +AQ
Sbjct: 425 PDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQE 484
Query: 118 VFWKM-LRKDKFTWTAMIVGLAISGHGDTA 146
+M + D W +++ + + + A
Sbjct: 485 FIRRMPVEPDAIAWGSLLSACRVHKNAELA 514
>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 591
Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats.
Identities = 63/170 (37%), Positives = 94/170 (55%), Gaps = 21/170 (12%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT 85
Y G + A + F M ERD V W +MI+G+ R EALTLFREM + D FT
Sbjct: 163 YAACGDTESAYKVFELMKERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTV 222
Query: 86 VRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124
V +L+ + + V +L+D+Y KCG + +AQRVF +M
Sbjct: 223 VSLLSASAELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSE 282
Query: 125 KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
++ +WT++IVGLA++G G+ AL++F +M + E+T+VGVL AC+H
Sbjct: 283 RNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSH 332
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 12/172 (6%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M +A +F + N +V +W TI+ GY + P ++ + M+ +
Sbjct: 68 MSYAYNVFTVIHNPNVFTWNTIIRGYAE-----------SDNPSPAFLFYRQMVVSCVEP 116
Query: 61 NRFREALTLFREMQTSNIRRDE-FTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119
+ L ++ N+R E +V I F + +FV +L+ +Y CGD E A +VF
Sbjct: 117 DTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVF 176
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
M +D W +MI G A++G + AL +F +M + D T V +LSA
Sbjct: 177 ELMKERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSA 228
>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
Length = 655
Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats.
Identities = 63/177 (35%), Positives = 99/177 (55%), Gaps = 21/177 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T +V+ Y + +A + F ++ +R+ V W+ MI GY R+ EAL LFR+MQ + +
Sbjct: 200 TALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVV 259
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
DE T V +++ D+ + AL++MY KCG +E+A+ V
Sbjct: 260 PDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEV 319
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
F M KD W++MIVGLAI+G + AL+ F +M A ++ + VT++GVLSAC H+
Sbjct: 320 FDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHS 376
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 52/170 (30%), Positives = 81/170 (47%), Gaps = 31/170 (18%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR-FREALTLFREMQTSNIRR-----DEF 83
G +D AR+ F+Q+ + W +MI G + +E + LFR+M +RR + F
Sbjct: 107 GDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKM----VRRGYPNPNTF 162
Query: 84 TTVRIL---------------------TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM 122
T +L + F + FV AL++ Y KC D+ A +VF ++
Sbjct: 163 TMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEI 222
Query: 123 LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
++ W+ MI G A G + AL +F M +A + DEVT V V+SAC
Sbjct: 223 TDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISAC 272
>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
Length = 564
Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats.
Identities = 63/177 (35%), Positives = 99/177 (55%), Gaps = 21/177 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T +V+ Y + +A + F ++ +R+ V W+ MI GY R+ EAL LFR+MQ + +
Sbjct: 131 TALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVV 190
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
DE T V +++ D+ + AL++MY KCG +E+A+ V
Sbjct: 191 PDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEV 250
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
F M KD W++MIVGLAI+G + AL+ F +M A ++ + VT++GVLSAC H+
Sbjct: 251 FDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHS 307
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 52/170 (30%), Positives = 81/170 (47%), Gaps = 31/170 (18%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR-FREALTLFREMQTSNIRR-----DEF 83
G +D AR+ F+Q+ + W +MI G + +E + LFR+M +RR + F
Sbjct: 38 GDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKM----VRRGYPNPNTF 93
Query: 84 TTVRIL---------------------TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM 122
T +L + F + FV AL++ Y KC D+ A +VF ++
Sbjct: 94 TMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEI 153
Query: 123 LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
++ W+ MI G A G + AL +F M +A + DEVT V V+SAC
Sbjct: 154 TDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISAC 203
>gi|226493697|ref|NP_001147320.1| selenium-binding protein-like [Zea mays]
gi|195609890|gb|ACG26775.1| selenium-binding protein-like [Zea mays]
Length = 605
Score = 122 bits (305), Expect = 8e-26, Method: Composition-based stats.
Identities = 70/183 (38%), Positives = 93/183 (50%), Gaps = 23/183 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV+SWTT+V G + G D AR F MPER+ V W AM+ GY++ RF +AL +F EM+
Sbjct: 164 DVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEMR 223
Query: 75 TSNI---------------------RRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVE 113
+ R E + D + A++DMYCKCG VE
Sbjct: 224 ARGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVVDMYCKCGCVE 283
Query: 114 KAQRVF--WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+A RVF + K TW MI G A+ G G AL +F +M R + D+VT V VL+A
Sbjct: 284 EAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGQDALKLFGRMEREGVAPDDVTLVNVLTA 343
Query: 172 CTH 174
C H
Sbjct: 344 CAH 346
>gi|186478293|ref|NP_172391.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099767|sp|O80488.1|PPR23_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09190
gi|3249103|gb|AAC24086.1| Contains similarity to membrane-associated salt-inducible protein
homolog TM021B04.10 gb|2191192 from A. thaliana BAC
gb|AF007271 [Arabidopsis thaliana]
gi|28393182|gb|AAO42022.1| unknown protein [Arabidopsis thaliana]
gi|332190289|gb|AEE28410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 484
Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 100/197 (50%), Gaps = 23/197 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
MG A ++F M ++V+ W ++ G+ + G V+ F QM ER V W +MI +
Sbjct: 153 MGDAQKVFDEMSERNVVVWNLMIRGFCDSGDVERGLHLFKQMSERSIVSWNSMISSLSKC 212
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT----------------------FNNDIFV 98
R REAL LF EM DE T V +L F + I V
Sbjct: 213 GRDREALELFCEMIDQGFDPDEATVVTVLPISASLGVLDTGKWIHSTAESSGLFKDFITV 272
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML-RAS 157
G AL+D YCK GD+E A +F KM R++ +W +I G A++G G+ +D+F M+
Sbjct: 273 GNALVDFYCKSGDLEAATAIFRKMQRRNVVSWNTLISGSAVNGKGEFGIDLFDAMIEEGK 332
Query: 158 IRLDEVTYVGVLSACTH 174
+ +E T++GVL+ C++
Sbjct: 333 VAPNEATFLGVLACCSY 349
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 21/147 (14%)
Query: 33 DIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTF 92
D A + F+ + + +++ AMI Y V E+L+ F M++ I DE+T +L +
Sbjct: 53 DYANRVFSHIQNPNVLVFNAMIKCYSLVGPPLESLSFFSSMKSRGIWADEYTYAPLLKSC 112
Query: 93 NN--DIFVG-------------------IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWT 131
++ D+ G I ++++Y G + AQ+VF +M ++ W
Sbjct: 113 SSLSDLRFGKCVHGELIRTGFHRLGKIRIGVVELYTSGGRMGDAQKVFDEMSERNVVVWN 172
Query: 132 AMIVGLAISGHGDTALDMFSQMLRASI 158
MI G SG + L +F QM SI
Sbjct: 173 LMIRGFCDSGDVERGLHLFKQMSERSI 199
>gi|297819826|ref|XP_002877796.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297323634|gb|EFH54055.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 530
Score = 122 bits (305), Expect = 8e-26, Method: Composition-based stats.
Identities = 62/193 (32%), Positives = 102/193 (52%), Gaps = 21/193 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ A ++F + +D++SW +I++G + G V A + F +MPE++ + W MI YL
Sbjct: 169 LDLAKKLFVEIPKRDIVSWNSIIAGVVRNGDVLYAHKLFDEMPEKNMISWNIMISAYLGA 228
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVG 99
N ++ LFREM + + +E T V +L T N+ + +
Sbjct: 229 NNPGVSIFLFREMVGAGFQGNENTLVLLLNACGRSARLKEGRSVHASLIRTFLNSSVVID 288
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMY KC +V+ A+R+F + ++K TW MI+ + G + L++F M+ +R
Sbjct: 289 TALIDMYGKCKEVDLARRIFDSLSVRNKVTWNVMILAHCLHGRPEDGLELFEAMINGLLR 348
Query: 160 LDEVTYVGVLSAC 172
DEVT+VGVL C
Sbjct: 349 PDEVTFVGVLCGC 361
Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 33/53 (62%)
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+LI MY CG ++ A+++F ++ ++D +W ++I G+ +G A +F +M
Sbjct: 158 SLIHMYTCCGALDLAKKLFVEIPKRDIVSWNSIIAGVVRNGDVLYAHKLFDEM 210
>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
Length = 747
Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 103/183 (56%), Gaps = 24/183 (13%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DVI++T +++GY+ G + ARQ F + + D V WTAMI GY++ +A+ +F+ M
Sbjct: 307 DVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMV 366
Query: 75 TSNIRRDEFTTVRIL------TTFNN---------------DIFVGIALIDMYCKCGDVE 113
+ R + FT +L T+ N+ VG AL MY K G +
Sbjct: 367 SEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSIN 426
Query: 114 KAQRVFWKMLR--KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
A++VF +LR +D +WT+MI+ LA G G+ A+++F QML I+ D +TYVGVLSA
Sbjct: 427 GARKVF-NLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSA 485
Query: 172 CTH 174
CTH
Sbjct: 486 CTH 488
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 100/224 (44%), Gaps = 53/224 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M K SW TI+SGY +G+++ A Q F +P RD V WT +I GY ++ RF
Sbjct: 29 AHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRF 88
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
+A+ +F +M + +FT +L + + + V +L
Sbjct: 89 EDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSL 148
Query: 103 IDMYCKCGDVEKAQRVFWKM-LR------------------------------KDKFTWT 131
++MY K GD++ A+ VF +M LR +D +W
Sbjct: 149 LNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWN 208
Query: 132 AMIVGLAISGHGDTALDMFSQMLR-ASIRLDEVTYVGVLSACTH 174
+MI G G + AL FS +L+ S++ D + LSAC +
Sbjct: 209 SMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACAN 252
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 92/222 (41%), Gaps = 55/222 (24%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F MK ++ SW ++S ++N G+VD+A F + ERD V W +MI G + EA
Sbjct: 164 VFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEA 223
Query: 67 LTLFRE-MQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIALID 104
L F ++ ++++ D F+ L T F+ VG ALI
Sbjct: 224 LQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALIS 283
Query: 105 MYCKCGDVEKAQR---------------------------------VFWKMLRKDKFTWT 131
MY K G VE A+R +F + D WT
Sbjct: 284 MYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWT 343
Query: 132 AMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
AMIVG +G + A+++F M+ R + T +LSA +
Sbjct: 344 AMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASS 385
>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
Length = 804
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 98/182 (53%), Gaps = 22/182 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
+VIS+T ++ GY+ G ++ AR+ F M RD V WTAMI GY + R EA+ LFR M
Sbjct: 364 NVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMI 423
Query: 75 TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVE 113
T + +T +L+ V A+I MY + G
Sbjct: 424 TCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFP 483
Query: 114 KAQRVFWKML-RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
A+R+F ++ RK+ TWT+MIV LA G G+ A+ +F +MLRA + D +TYVGVLSAC
Sbjct: 484 WARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSAC 543
Query: 173 TH 174
+H
Sbjct: 544 SH 545
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 95/217 (43%), Gaps = 53/217 (24%)
Query: 11 MKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 70
+ ++V +W +++S + G++ AR FA+MPERD V WT M+ G R RF EA+
Sbjct: 93 LARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTL 152
Query: 71 REMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKC 109
+M +FT +L++ + + V ++++MY KC
Sbjct: 153 LDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKC 212
Query: 110 GDVEKAQRVFWKM----------------------LRKDKF---------TWTAMIVGLA 138
GD E A VF +M L + F +W AMI G
Sbjct: 213 GDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYN 272
Query: 139 ISGHGDTALDMFSQMLR-ASIRLDEVTYVGVLSACTH 174
+G AL +FS+ML +S+ DE T VLSAC +
Sbjct: 273 QNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACAN 309
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 91/225 (40%), Gaps = 55/225 (24%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M + V SW +VS + G++D+A F MP R V W AMI GY +
Sbjct: 218 ASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLD 277
Query: 64 REALTLF-REMQTSNIRRDEFTTVRILTTFNN--DIFVGI-------------------A 101
+AL LF R + S++ DEFT +L+ N ++ +G A
Sbjct: 278 AKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNA 337
Query: 102 LIDMYCKCGDVEKAQRV---------------------------------FWKMLRKDKF 128
LI Y K G VE A+R+ F M +D
Sbjct: 338 LISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVV 397
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
WTAMIVG +G D A+D+F M+ + T VLS C
Sbjct: 398 AWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCA 442
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 24/150 (16%)
Query: 21 TIVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
I++ Y G AR+ F Q+ ++ + WT+MI + + EA+ LF EM + +
Sbjct: 471 AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVE 530
Query: 80 RDEFTTVRILTTFNNDIFVG----------------------IALIDMYCKCGDVEKAQR 117
D T V +L+ ++ FV ++D+ + G +AQ
Sbjct: 531 PDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQE 590
Query: 118 VFWKM-LRKDKFTWTAMIVGLAISGHGDTA 146
+M + D W +++ + + + A
Sbjct: 591 FIRRMPVEPDAIAWGSLLSACRVHKNAELA 620
>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g33170-like [Cucumis sativus]
Length = 1573
Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats.
Identities = 65/184 (35%), Positives = 99/184 (53%), Gaps = 21/184 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
N D+ + ++ YI G + A + F ++ D V WT MI GY+ AL+++
Sbjct: 1131 NNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHL 1190
Query: 73 MQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGD 111
M+ S ++ DE+T ++ ++ D FVG +L+DMYCKCG
Sbjct: 1191 MRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGS 1250
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
V+ A RVF KM + W AM++GLA GH D AL++F M I+ D+VT++GVLSA
Sbjct: 1251 VQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSA 1310
Query: 172 CTHN 175
C+H+
Sbjct: 1311 CSHS 1314
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 21/175 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T ++ Y G++D A + D W A++ GY++ N+ R+AL F M I
Sbjct: 1037 TALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIP 1096
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
DE T + FNND++V ++DMY KCGD+ A +
Sbjct: 1097 IDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALEL 1156
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
F ++ R D+ WT MI G +G D AL ++ M + ++ DE T+ ++ A +
Sbjct: 1157 FGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASS 1211
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 24/175 (13%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
++++ Y G V A + F PE D + W MI Y + N EA+ FR++ ++
Sbjct: 934 SLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKP 993
Query: 81 DEFTTVRILTTFN------------------------NDIFVGIALIDMYCKCGDVEKAQ 116
D+FT +L + ND FV ALID+Y K G +++A+
Sbjct: 994 DQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAE 1053
Query: 117 RVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+ D +W A++ G S AL+ FS M I +DE+T + A
Sbjct: 1054 FLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKA 1108
Score = 59.7 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 49/175 (28%), Positives = 74/175 (42%), Gaps = 21/175 (12%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+GF L++F + +V+ Y G V AR F +MPERD VLW M+ Y+
Sbjct: 746 IGFELDLFVS---------GALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVEN 796
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
+ EAL F S D ++ N+D+ + E+ +
Sbjct: 797 SFQDEALRFFSAFHRSGFXPDFSNLHCVIGGVNSDVSNN--------RKRHAEQVKAYAM 848
Query: 121 KMLRKDK----FTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
KM D+ F W + +G A+D F +LR++I D VT V +LSA
Sbjct: 849 KMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSA 903
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 68/168 (40%), Gaps = 30/168 (17%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV--NRFREALTLFREMQTSNIR 79
+++ Y G + ARQ F + +RD V W +++ Y + + + L FR +R
Sbjct: 652 LITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGL--LR 709
Query: 80 RDEFTTVRILTT--------------------------FNNDIFVGIALIDMYCKCGDVE 113
F+ R+ F D+FV AL+++YCK G V
Sbjct: 710 EFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVG 769
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
+A+ +F KM +D W M+ + D AL FS R+ D
Sbjct: 770 QARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPD 817
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 36/145 (24%), Positives = 58/145 (40%), Gaps = 21/145 (14%)
Query: 50 WTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT------------------- 90
W + +L + A+ F+ + S I D T V IL+
Sbjct: 862 WNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVI 921
Query: 91 --TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALD 148
+F + V +L++MY K G V A++ F D +W MI A + A+
Sbjct: 922 KSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAIC 981
Query: 149 MFSQMLRASIRLDEVTYVGVLSACT 173
F +LR ++ D+ T VL AC+
Sbjct: 982 TFRDLLRDGLKPDQFTLASVLRACS 1006
>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Cucumis sativus]
Length = 1573
Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats.
Identities = 65/184 (35%), Positives = 99/184 (53%), Gaps = 21/184 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
N D+ + ++ YI G + A + F ++ D V WT MI GY+ AL+++
Sbjct: 1131 NNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHL 1190
Query: 73 MQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGD 111
M+ S ++ DE+T ++ ++ D FVG +L+DMYCKCG
Sbjct: 1191 MRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGS 1250
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
V+ A RVF KM + W AM++GLA GH D AL++F M I+ D+VT++GVLSA
Sbjct: 1251 VQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSA 1310
Query: 172 CTHN 175
C+H+
Sbjct: 1311 CSHS 1314
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 21/175 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T ++ Y G++D A + D W A++ GY++ N+ R+AL F M I
Sbjct: 1037 TALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIP 1096
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
DE T + FNND++V ++DMY KCGD+ A +
Sbjct: 1097 IDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALEL 1156
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
F ++ R D+ WT MI G +G D AL ++ M + ++ DE T+ ++ A +
Sbjct: 1157 FGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASS 1211
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 24/175 (13%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
++++ Y G V A + F PE D + W MI Y + N EA+ FR++ ++
Sbjct: 934 SLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKP 993
Query: 81 DEFTTVRILTTFN------------------------NDIFVGIALIDMYCKCGDVEKAQ 116
D+FT +L + ND FV ALID+Y K G +++A+
Sbjct: 994 DQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAE 1053
Query: 117 RVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+ D +W A++ G S AL+ FS M I +DE+T + A
Sbjct: 1054 FLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKA 1108
Score = 58.9 bits (141), Expect = 8e-07, Method: Composition-based stats.
Identities = 49/175 (28%), Positives = 74/175 (42%), Gaps = 21/175 (12%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+GF L++F + +V+ Y G V AR F +MPERD VLW M+ Y+
Sbjct: 746 IGFELDLFVS---------GALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVEN 796
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
+ EAL F S D ++ N+D+ + E+ +
Sbjct: 797 SFQDEALRFFSAFHRSGFFPDFSNLHCVIGGVNSDVSNN--------RKRHAEQVKAYAM 848
Query: 121 KMLRKDK----FTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
KM D+ F W + +G A+D F +LR++I D VT V +LSA
Sbjct: 849 KMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSA 903
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 41/163 (25%), Positives = 67/163 (41%), Gaps = 30/163 (18%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV--NRFREALTLFREMQTSNIR 79
+++ Y G + ARQ F + +RD V W +++ Y + + + L FR +R
Sbjct: 652 LITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGL--LR 709
Query: 80 RDEFTTVRILTT--------------------------FNNDIFVGIALIDMYCKCGDVE 113
F+ R+ F D+FV AL+++YCK G V
Sbjct: 710 EFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVG 769
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156
+A+ +F KM +D W M+ + D AL FS R+
Sbjct: 770 QARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRS 812
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 36/145 (24%), Positives = 58/145 (40%), Gaps = 21/145 (14%)
Query: 50 WTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT------------------- 90
W + +L + A+ F+ + S I D T V IL+
Sbjct: 862 WNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVI 921
Query: 91 --TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALD 148
+F + V +L++MY K G V A++ F D +W MI A + A+
Sbjct: 922 KSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAIC 981
Query: 149 MFSQMLRASIRLDEVTYVGVLSACT 173
F +LR ++ D+ T VL AC+
Sbjct: 982 TFRDLLRDGLKPDQFTLASVLRACS 1006
>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
Length = 798
Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats.
Identities = 69/192 (35%), Positives = 99/192 (51%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F M V + ++ G+ RG VD A+ F +M ERD W+AMI Y +
Sbjct: 255 AAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFL 314
Query: 64 REALTLFREMQTSNIRRDEFTTVRILT---------------------TFNNDIFVGIAL 102
EAL+ FREM +R + + + ILT +F+ D+F AL
Sbjct: 315 MEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSAL 374
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I MY KCG+++KA+RVF KD W +MI G A G G+ AL +F M A + D
Sbjct: 375 ITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDG 434
Query: 163 VTYVGVLSACTH 174
+TY+G L+AC++
Sbjct: 435 ITYIGALTACSY 446
Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 49/150 (32%), Positives = 83/150 (55%), Gaps = 18/150 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+ +F M ++ +S+T ++ G ++ G+V+ AR+ F +MP+RD V WTAM+ GY + R
Sbjct: 131 AIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRI 190
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
EA LF EM N + A+I Y + G+V A+++F M
Sbjct: 191 TEARALFDEMPKRN------------------VVSWTAMISGYAQNGEVNLARKLFEVMP 232
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+++ +WTAM+VG +GH + A ++F+ M
Sbjct: 233 ERNEVSWTAMLVGYIQAGHVEDAAELFNAM 262
Score = 93.2 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 54/169 (31%), Positives = 85/169 (50%), Gaps = 18/169 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M ++V+SWT ++SGY G+V++AR+ F MPER+ V WTAM+ GY++
Sbjct: 193 ARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHV 252
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+A LF M + N + VG + + G V+ A+ VF KM
Sbjct: 253 EDAAELFNAMPEHPV------------AACNAMMVG------FGQRGMVDAAKTVFEKMR 294
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+D TW+AMI + AL F +ML +R + + + +L+ C
Sbjct: 295 ERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVC 343
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/174 (25%), Positives = 83/174 (47%), Gaps = 24/174 (13%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGY-INRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVN 61
AL +F M ++D+ S+ ++SG + R + A A +P V +T+++ GY+R
Sbjct: 67 ALGLFRRMPSRDLASYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHG 126
Query: 62 RFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWK 121
+A+ LF++M N + + +G L+D G V +A+R+F +
Sbjct: 127 LLADAIRLFQQMPERN-------------HVSYTVLLG-GLLD----AGRVNEARRLFDE 168
Query: 122 MLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
M +D WTAM+ G +G A +F +M + ++ V++ ++S N
Sbjct: 169 MPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNV----VSWTAMISGYAQN 218
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 17/140 (12%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA-LTLFREMQTSN----------- 77
G ++ AR F MP R + A++ GY R NR +A L LFR M + +
Sbjct: 31 GNIEGARAAFEAMPLRTTASYNALLAGYFR-NRLPDAALGLFRRMPSRDLASYNALISGL 89
Query: 78 -IRRDEFTTVRILTT---FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
+RR F + +L+ Y + G + A R+F +M ++ ++T +
Sbjct: 90 SLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVL 149
Query: 134 IVGLAISGHGDTALDMFSQM 153
+ GL +G + A +F +M
Sbjct: 150 LGGLLDAGRVNEARRLFDEM 169
>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 657
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 98/192 (51%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A F M K+V++WT+++ G VD R +F QMPER+ V W AMI Y++ R
Sbjct: 269 AHRCFDMMPIKNVVTWTSMLCAQAKHGSVDAVRDWFEQMPERNIVSWNAMISCYVQCGRL 328
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTF--NNDIFVGI-------------------AL 102
E L L+ M++ I DEFT +L+ N D+ G +L
Sbjct: 329 HETLDLYNRMRSLGITPDEFTLAGVLSACGQNGDLASGKMIHCYVRDNFNDPGVTLLNSL 388
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY +CG V+ A +F +M K+ +W +I LA+ G + F M+ + DE
Sbjct: 389 LDMYARCGQVDTAIGLFTEMPNKNVISWNVIIGALAMHGRAQETVTFFRTMVSDAFSPDE 448
Query: 163 VTYVGVLSACTH 174
+T+VG+LSAC+H
Sbjct: 449 ITFVGLLSACSH 460
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 84/202 (41%), Gaps = 52/202 (25%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT 85
+ + G + +R++F +M +R+ V W MI GY + EA LF EM+ + D FT
Sbjct: 159 HASAGSLRDSRRFFGEMADRNVVSWNTMIGGYAQAGEVSEACALFGEMRHQGLLADVFTL 218
Query: 86 VRILTTFNN---------------------DIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124
V +L ++ D +G AL+DMY KCGD+ A R F M
Sbjct: 219 VSLLFACSSEGNLEVGRLVHCHMLVSGSRVDRILGNALLDMYGKCGDLWMAHRCFDMMPI 278
Query: 125 KDKFTWTAMIVGLAISGHGDTA-------------------------------LDMFSQM 153
K+ TWT+M+ A G D LD++++M
Sbjct: 279 KNVVTWTSMLCAQAKHGSVDAVRDWFEQMPERNIVSWNAMISCYVQCGRLHETLDLYNRM 338
Query: 154 LRASIRLDEVTYVGVLSACTHN 175
I DE T GVLSAC N
Sbjct: 339 RSLGITPDEFTLAGVLSACGQN 360
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 22/179 (12%)
Query: 16 VISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 75
+ S+ T+ +G + G AR+ F ++PE D ++ ++ Y + +EAL L R +
Sbjct: 49 IASYCTLSAGDRDGGLCH-ARRLFDRIPEPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQ 107
Query: 76 SNIRRDEFT---------TVRILTT------------FNNDIFVGIALIDMYCKCGDVEK 114
I +EFT TVR + F IFV AL+ + G +
Sbjct: 108 RGILPNEFTLPFVLKACTTVRAVEHALAAHGVVVKLGFVQQIFVANALLHFHASAGSLRD 167
Query: 115 AQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
++R F +M ++ +W MI G A +G A +F +M + D T V +L AC+
Sbjct: 168 SRRFFGEMADRNVVSWNTMIGGYAQAGEVSEACALFGEMRHQGLLADVFTLVSLLFACS 226
>gi|255559617|ref|XP_002520828.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539959|gb|EEF41537.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 656
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 101/192 (52%), Gaps = 18/192 (9%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A + F +M KD+ +W +++ Y+++G + A F MPE++ V W A+IDGY R
Sbjct: 284 MELARKYFDHMPTKDIAAWNAMITAYVDQGSMAEASNLFNLMPEKNIVSWNALIDGYARN 343
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT------------------FNNDIFVGIAL 102
+L M SN + +E T +LT F D + L
Sbjct: 344 GPESNSLRYLILMLRSNFKPNETTITSVLTACDSILELMQAHGLVIHLGFEQDKVLANGL 403
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+ Y +CGDV A+ +F ++ KD +WTAMI+ + G G AL +F++MLR+ + D
Sbjct: 404 VTTYSRCGDVLSARFIFDQLEIKDIVSWTAMILAYSNHGCGPHALQVFARMLRSGAKPDG 463
Query: 163 VTYVGVLSACTH 174
+T+VG+LSAC+H
Sbjct: 464 ITFVGLLSACSH 475
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 93/213 (43%), Gaps = 44/213 (20%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+ +F M K+V+SWTT V GY G +D AR F QMPE++ + WTAM+ Y+ +
Sbjct: 163 AMRLFNQMPEKNVVSWTTAVVGYAQNGFIDEARDIFNQMPEKNIIAWTAMVKSYVENDEI 222
Query: 64 REALTLFREMQTSNI---------------------------RRDEFTTVRILTTF---- 92
EA LF +M N+ +R+E + ++T
Sbjct: 223 DEAFELFYQMPQRNLYSWNIMISGCINANRLNEAIQLFNSMPQRNEVSWTTLVTGLARNG 282
Query: 93 -------------NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAI 139
DI A+I Y G + +A +F M K+ +W A+I G A
Sbjct: 283 MMELARKYFDHMPTKDIAAWNAMITAYVDQGSMAEASNLFNLMPEKNIVSWNALIDGYAR 342
Query: 140 SGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+G +L MLR++ + +E T VL+AC
Sbjct: 343 NGPESNSLRYLILMLRSNFKPNETTITSVLTAC 375
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 81/155 (52%), Gaps = 18/155 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +D +S+ ++++ Y+ + A F ++PER+ V +AMI GY+R R
Sbjct: 70 ARKVFDEMPRRDAVSYASMITVYLKNKDLPQAEILFREIPERNVVADSAMISGYVRAGRL 129
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+A +F +M N +F +L+ Y K G+V++A R+F +M
Sbjct: 130 DKARQVFDQMVERN------------------VFSWTSLVSGYFKIGNVDEAMRLFNQMP 171
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
K+ +WT +VG A +G D A D+F+QM +I
Sbjct: 172 EKNVVSWTTAVVGYAQNGFIDEARDIFNQMPEKNI 206
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 86/172 (50%), Gaps = 22/172 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M ++V SWT++VSGY G VD A + F QMPE++ V WT + GY +
Sbjct: 132 ARQVFDQMVERNVFSWTSLVSGYFKIGNVDEAMRLFNQMPEKNVVSWTTAVVGYAQNGFI 191
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
EA +F +M N I A++ Y + ++++A +F++M
Sbjct: 192 DEARDIFNQMPEKN------------------IIAWTAMVKSYVENDEIDEAFELFYQMP 233
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
+++ ++W MI G + + A+ +F+ M + +EV++ +++ N
Sbjct: 234 QRNLYSWNIMISGCINANRLNEAIQLFNSMPQR----NEVSWTTLVTGLARN 281
>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
Length = 616
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 99/190 (52%), Gaps = 22/190 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVL-WTAMIDGYLRVNRFRE 65
+F ++ D +SW +++ GY+ G++D+A F +MPE++ + WT MI GY++ +E
Sbjct: 167 LFDRIQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKE 226
Query: 66 ALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALID 104
AL LF EMQ SN+ D + L+ + D + LID
Sbjct: 227 ALQLFHEMQNSNVPPDNVSLASALSACSQLGALEQGKWIHSYANKTRTRIDSVLCCVLID 286
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVT 164
MY KCG++E+A VF M K WTA+I G A G G A+ F +M ++ + +T
Sbjct: 287 MYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAYHGLGREAISKFLEMQNMGVKPNAIT 346
Query: 165 YVGVLSACTH 174
+ VL+AC++
Sbjct: 347 FTAVLTACSY 356
Score = 42.4 bits (98), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 21/137 (15%)
Query: 38 YFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN--- 94
+F D LW MI G ++ +L L+ M + + +T +L +N
Sbjct: 66 FFNGFDRPDTFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSA 125
Query: 95 ------------------DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVG 136
DI+ +LI+ Y G+ + A +F ++ D +W ++I G
Sbjct: 126 FQETTQIHAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKG 185
Query: 137 LAISGHGDTALDMFSQM 153
+G D AL +F +M
Sbjct: 186 YVKAGEMDMALTLFRKM 202
>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Vitis vinifera]
Length = 512
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 111/198 (56%), Gaps = 23/198 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ A + F M +DV +W ++++GY G ++ A + F MP R+ WTAMI GY +
Sbjct: 133 LSLARKQFDEMTVRDVPTWNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQN 192
Query: 61 NRFREALTLFREMQT-SNIRRDEFTTVRILTTFNN---------------------DIFV 98
++ +AL++F M+ + +R +E T +L N +++V
Sbjct: 193 GQYAKALSMFLMMEEETEMRPNEVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYV 252
Query: 99 GIALIDMYCKCGDVEKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
AL++MY +CG ++KA VF ++ R++ +W +MI+GLA+ G D A+++F +MLR
Sbjct: 253 SNALLEMYARCGRIDKAWGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREG 312
Query: 158 IRLDEVTYVGVLSACTHN 175
D+VT+VGVL ACTH
Sbjct: 313 AAPDDVTFVGVLLACTHG 330
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 75/196 (38%), Gaps = 53/196 (27%)
Query: 31 QVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM--QTSNIRRDEFTTV-- 86
+ A + F +P+ L+ +I Y + +L+ +M Q + FT +
Sbjct: 31 SIPYAHKLFDFIPKPTVFLYNKLIQAYSSHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFS 90
Query: 87 -----------RILTT------FNNDIFVGIALIDMYCK--------------------- 108
R+L T F D+F AL+DMY K
Sbjct: 91 ACASLSSHQQGRMLHTHFVKSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPT 150
Query: 109 ----------CGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS- 157
CGD+E A +F M ++ +WTAMI G A +G AL MF M +
Sbjct: 151 WNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETE 210
Query: 158 IRLDEVTYVGVLSACT 173
+R +EVT VL AC
Sbjct: 211 MRPNEVTLASVLPACA 226
>gi|347954532|gb|AEP33766.1| organelle transcript processing 82, partial [Lepidium virginicum]
Length = 464
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 106/192 (55%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F ++ V+S+T +++GY +RG AR+ F ++ +D V W AMI GY+ +
Sbjct: 127 AHKVFDRSSHRHVVSYTALITGYASRGYTKSARKLFDEILVKDIVSWNAMISGYVETFNY 186
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
+EAL L++EM +N++ DE T V +++ F +++ V AL
Sbjct: 187 KEALELYKEMVKTNVKPDESTMVTVVSACAQSSNIELGRQVHSLIEDHGFGSNLKVVNAL 246
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY KCG++E A R+F ++ KD +W +I G AL +F +MLR+ ++
Sbjct: 247 MDMYSKCGEMETACRLFQGLVNKDAISWNTLIGGHTHMNLYKEALFLFQEMLRSGESPND 306
Query: 163 VTYVGVLSACTH 174
VT + VLSAC H
Sbjct: 307 VTMLSVLSACAH 318
Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 93/173 (53%), Gaps = 23/173 (13%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT 85
Y G+++ A + F + +D + W +I G+ +N ++EAL LF+EM S ++ T
Sbjct: 250 YSKCGEMETACRLFQGLVNKDAISWNTLIGGHTHMNLYKEALFLFQEMLRSGESPNDVTM 309
Query: 86 VRILTT-----------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKM 122
+ +L+ N + +LIDMY KCGD+E A +VF M
Sbjct: 310 LSVLSACAHLGAIDIGRWIHVYIDKRLKGVTNSSSLRTSLIDMYAKCGDIEAASQVFDSM 369
Query: 123 LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
L + +W AMI G A+ G + A D+FS+M ++ I D++T+VG+LSAC+H+
Sbjct: 370 LARSLSSWNAMIFGFAMHGKANAAFDLFSKMRKSGIEPDDITFVGLLSACSHS 422
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 88/208 (42%), Gaps = 45/208 (21%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGY-INRGQVDIARQYFAQMPERDYVLWTAMIDGYLR 59
+ +A+ +F ++ +++ W T+ G+ +N V + L+ MI L
Sbjct: 23 LPYAISVFETIEEPNLLIWNTMFRGHALNSDSVSALK------------LYVCMISLGLL 70
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTT-FNNDIFVGIALIDMYCKCGDVEKAQRV 118
N + L ++ R + ++ ++ D++V +LI MY + G +E A +V
Sbjct: 71 PNSYSFPFLLKSCAKSKAFREGQQIHGHVVKLGYDLDMYVHTSLISMYAQNGRLEDAHKV 130
Query: 119 FWK-------------------------------MLRKDKFTWTAMIVGLAISGHGDTAL 147
F + +L KD +W AMI G + + AL
Sbjct: 131 FDRSSHRHVVSYTALITGYASRGYTKSARKLFDEILVKDIVSWNAMISGYVETFNYKEAL 190
Query: 148 DMFSQMLRASIRLDEVTYVGVLSACTHN 175
+++ +M++ +++ DE T V V+SAC +
Sbjct: 191 ELYKEMVKTNVKPDESTMVTVVSACAQS 218
>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Glycine max]
Length = 635
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 99/192 (51%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+E F + VI+WT +++GY+ G+V++A + F +M R V W AMI GY+ R
Sbjct: 185 AVECFYAAPMRSVITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRA 244
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
+ L LFR M + ++ + + +L +N D G +L
Sbjct: 245 EDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSL 304
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+ MY KCGD++ A +F ++ RKD W AMI G A G G AL +F +M + ++ D
Sbjct: 305 VSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDW 364
Query: 163 VTYVGVLSACTH 174
+T+V VL AC H
Sbjct: 365 ITFVAVLLACNH 376
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 18/166 (10%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 67
F +M KDV SW T++S G + AR+ F+ MPE++ V W+AM+ GY+ A+
Sbjct: 127 FDSMPLKDVASWNTMISALAQVGLMGEARRLFSAMPEKNCVSWSAMVSGYVACGDLDAAV 186
Query: 68 TLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDK 127
F +R + T+ A+I Y K G VE A+R+F +M +
Sbjct: 187 ECFYA-----------APMRSVITWT-------AMITGYMKFGRVELAERLFQEMSMRTL 228
Query: 128 FTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
TW AMI G +G + L +F ML ++ + ++ VL C+
Sbjct: 229 VTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCS 274
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 14/115 (12%)
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTF--------NNDIFVGIALIDMYCKCGDVEKAQRV 118
L L R + S + F T+ + NN++ LI Y +CGD++ A RV
Sbjct: 4 LRLLRRKKRSPLLTSSFVTLSKYVSSHTHQHEFNNNNVIASNKLIASYVRCGDIDSAVRV 63
Query: 119 FWKMLRKDKFTWTAMIVGLA-ISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
F M K TW +++ A GH + A +F ++ + + V+Y ++ AC
Sbjct: 64 FEDMKVKSTVTWNSILAAFAKKPGHFEYARQLFEKIPQP----NTVSY-NIMLAC 113
>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 640
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 100/185 (54%), Gaps = 22/185 (11%)
Query: 12 KNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFR 71
++ +V+ W ++ GY+ G AR F +M +R V W MI GY + F++A+ +FR
Sbjct: 197 RDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFR 256
Query: 72 EMQT-SNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKC 109
EM+ +IR + T V +L + D +G ALIDMY KC
Sbjct: 257 EMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKC 316
Query: 110 GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVL 169
G +EKA VF ++ R++ TW+AMI G AI G A+D F +M +A +R +V Y+ +L
Sbjct: 317 GIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLL 376
Query: 170 SACTH 174
+AC+H
Sbjct: 377 TACSH 381
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 88/222 (39%), Gaps = 59/222 (26%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGY--INRGQVDIARQYFAQMPERDYVLWTAMIDGYL 58
+ +A +IF M ++ SW TI+ G+ + + IA F +M M D ++
Sbjct: 68 LDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEM----------MSDEFI 117
Query: 59 RVNRFREALTLFREMQTSNIRR---------------DEFTTVRILTTF----------- 92
NRF L +T I++ DEF ++ +
Sbjct: 118 EPNRFTFPSVLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACV 177
Query: 93 --------------------NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA 132
+ ++ + +ID Y + GD + A+ +F KM ++ +W
Sbjct: 178 LFYKNIIEREMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNT 237
Query: 133 MIVGLAISGHGDTALDMFSQMLRAS-IRLDEVTYVGVLSACT 173
MI G + +G A+++F +M + IR + VT V VL A +
Sbjct: 238 MISGYSQNGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVS 279
>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 638
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 99/182 (54%), Gaps = 21/182 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
++DV+SW +++ G++ GQ+ +A++ F +MPE+D + W +I G ++ +AL F+E
Sbjct: 197 SRDVVSWNSMIVGFVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGELEKALDYFKE 256
Query: 73 MQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGD 111
+ +R +E V +L F +G AL+DMY KCG
Sbjct: 257 LGEQKLRPNEAILVSLLAAAAQLGTLEYGKRIHSIANSLRFPMTASLGTALVDMYAKCGC 316
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+++++ +F +M KDK++W MI GLA G G AL +F + L VT++GVL+A
Sbjct: 317 IDESRFLFDRMPEKDKWSWNVMICGLATHGLGQEALALFEKFLTQGFHPVNVTFIGVLTA 376
Query: 172 CT 173
C+
Sbjct: 377 CS 378
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 77/177 (43%), Gaps = 20/177 (11%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
+AL I+ ++ + V + ++ ++ +P L++ M ++
Sbjct: 84 YALSIYNSISHPTVFATNNMIRCFVK-----------GDLPRHSISLYSHMCRSFVAAPN 132
Query: 63 FREALTLFREMQTSNIRRDEFTTVR---ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119
+ LT + ++ E V+ I F D+FV ALI +YC C VE A++VF
Sbjct: 133 -KHTLTFVLQACSNAFAIREGAQVQTHVIKLGFVKDVFVRNALIHLYCTCCRVESAKQVF 191
Query: 120 WKML-RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
++ +D +W +MIVG G A +F +M D +++ ++S C N
Sbjct: 192 DEVPSSRDVVSWNSMIVGFVRLGQISVAQKLFVEMPEK----DVISWGTIISGCVQN 244
>gi|414589212|tpg|DAA39783.1| TPA: hypothetical protein ZEAMMB73_012385 [Zea mays]
Length = 590
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 99/193 (51%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M KDV+SWT +VS Y G++D AR F QMP+++ V W AMI GY R+
Sbjct: 265 AWSLFDIMDRKDVVSWTAMVSAYAKIGELDSARVLFDQMPDKNLVSWNAMITGYNHNLRY 324
Query: 64 REALTLFREMQTSN-IRRDEFTTVRILTTF-------------------NNDIFV--GIA 101
+AL F++M DE T V +++ N I V G A
Sbjct: 325 DDALCTFQQMMLEGRFMPDEATLVSVVSACAQLGSVEYCNWISSYISKSNTHITVALGNA 384
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+DM+ KCGDV +A VF KM + TWT MI G A +G AL +++ M R + LD
Sbjct: 385 LVDMFAKCGDVGRAHLVFNKMKTRCTITWTTMISGFAYNGQFREALLVYNDMCREGVTLD 444
Query: 162 EVTYVGVLSACTH 174
+ +V L AC H
Sbjct: 445 DTVFVAALGACAH 457
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 80/172 (46%), Gaps = 19/172 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+E+F M ++V+SW TIV+ + G + AR F +MP RD + W MI GY
Sbjct: 203 AMELFEAMPERNVVSWNTIVAAFTRAGDMVSARAVFDRMPIRDAISWNLMISGYATSGNV 262
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
A +LF M D+ A++ Y K G+++ A+ +F +M
Sbjct: 263 ESAWSLFDIMD------------------RKDVVSWTAMVSAYAKIGELDSARVLFDQMP 304
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQ-MLRASIRLDEVTYVGVLSACTH 174
K+ +W AMI G + D AL F Q ML DE T V V+SAC
Sbjct: 305 DKNLVSWNAMITGYNHNLRYDDALCTFQQMMLEGRFMPDEATLVSVVSACAQ 356
>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 705
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 102/195 (52%), Gaps = 27/195 (13%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M ++V+S T++V GY V AR F+ M E++ V W A+I GY + EA
Sbjct: 310 VFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEA 369
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNN---------------------------DIFVG 99
+ LF ++ +I +T +L N DIFVG
Sbjct: 370 VRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVG 429
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
+LIDMY KCG VE VF +M+ +D +W AMIVG A +G+G AL++F +ML + +
Sbjct: 430 NSLIDMYMKCGMVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQK 489
Query: 160 LDEVTYVGVLSACTH 174
D VT +GVLSAC+H
Sbjct: 490 PDHVTMIGVLSACSH 504
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 93/191 (48%), Gaps = 21/191 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M ++ S+ ++S G++D A F MPE D W AM+ G+ + +RF
Sbjct: 73 ARKVFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRF 132
Query: 64 REALTLFREMQTSNIRRDEFT------TVRILTTFNN---------------DIFVGIAL 102
EAL F +M + + +E++ LT N D+++G AL
Sbjct: 133 EEALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSAL 192
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY KCG V AQR F M ++ +W ++I +G AL++F M+ + DE
Sbjct: 193 VDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDE 252
Query: 163 VTYVGVLSACT 173
+T V+SAC
Sbjct: 253 ITLASVVSACA 263
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 84/183 (45%), Gaps = 26/183 (14%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV + +V Y G V A++ F M R+ V W ++I Y + +AL +F M
Sbjct: 185 DVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMM 244
Query: 75 TSNIRRDEFTTVRILTT----------------------FNNDIFVGIALIDMYCKCGDV 112
+ + DE T +++ + ND+ +G AL+DMY KC V
Sbjct: 245 DNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRV 304
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+A+ VF +M ++ + T+M+ G A + A MFS M+ ++ V++ +++
Sbjct: 305 NEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNV----VSWNALIAGY 360
Query: 173 THN 175
T N
Sbjct: 361 TQN 363
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
I T F+++IF+ L+D Y KCG E A++VF +M +++ F++ A++ L G D A
Sbjct: 46 IKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTKFGKLDEAF 105
Query: 148 DMFSQM 153
++F M
Sbjct: 106 NVFKSM 111
>gi|224123708|ref|XP_002319146.1| predicted protein [Populus trichocarpa]
gi|222857522|gb|EEE95069.1| predicted protein [Populus trichocarpa]
Length = 337
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 110/199 (55%), Gaps = 25/199 (12%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A+ +F M ++V++W +++G + G+++ A F +MPE++ V WT +IDGY+R
Sbjct: 8 LGDAMILFDEMPKRNVVTWNVMITGLVKWGKLEFASSLFDEMPEKNVVSWTGIIDGYIRN 67
Query: 61 NRFREALTLFREMQT-SNIRRDEFTTVRILTTFNN----------------------DIF 97
N++ E L+LFR M I+ E T + IL +N DI
Sbjct: 68 NKYSEGLSLFRRMVVCEGIKPTEITILAILPAISNMGELKSCSLIHGYAEKRGFNAFDIR 127
Query: 98 VGIALIDMYCKCGDVEKAQRVFW--KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155
V ++ID Y KCG + A + F + RK+ +WT++I G A+ G A++ F +M +
Sbjct: 128 VANSIIDCYSKCGCIASAFKFFEDISVERKNLVSWTSIISGFAMHGMWKEAVEYFERMEK 187
Query: 156 ASIRLDEVTYVGVLSACTH 174
A ++ + VT++ VL+AC+H
Sbjct: 188 AGLKPNRVTFLSVLNACSH 206
>gi|255580653|ref|XP_002531149.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529262|gb|EEF31234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 311
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 103/195 (52%), Gaps = 24/195 (12%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A ++F M D++SW +IV+ Y N G++D A F M + V W MI GYL+ N
Sbjct: 41 LARKVFDEMSQADLVSWNSIVNAYANVGELDTAHDIFNIMLGKTVVSWNVMIYGYLKGNN 100
Query: 63 FREALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIA 101
+L LFR+M S +R ++ T V +L T+ N + + +
Sbjct: 101 PGCSLMLFRKMVNSGLRGNDKTMVSVLSACGKSARLTEGRSIHGFLIRTSLNFSVILLTS 160
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRA---SI 158
L+DMY KC VE A+ +F M+ ++ W AMI+G I G LD+F++M+ + +I
Sbjct: 161 LMDMYSKCQKVELARSIFDSMVHRNLICWNAMILGHCIHGKPADGLDLFAEMVNSTGETI 220
Query: 159 RLDEVTYVGVLSACT 173
DEVTY+GV+SAC
Sbjct: 221 LPDEVTYIGVISACA 235
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
+LI Y CG VE A++VF +M + D +W +++ A G DTA D+F+ ML ++
Sbjct: 28 SLIHFYGCCGLVELARKVFDEMSQADLVSWNSIVNAYANVGELDTAHDIFNIMLGKTV 85
>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
lyrata]
gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
lyrata]
Length = 1111
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 99/189 (52%), Gaps = 21/189 (11%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE 65
++F ++ D + T +V+ G V AR+ F MPE+D + W AMI GY +V RE
Sbjct: 172 KVFNSVSYPDFVCRTAMVTACARCGDVAFARKLFEGMPEKDPIAWNAMISGYAQVGESRE 231
Query: 66 ALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALID 104
AL LF MQ ++ + + + +L+ + +G L+D
Sbjct: 232 ALNLFHLMQLEGVKVNGVSMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLGTTLVD 291
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVT 164
+Y KCGD++KA VFW M K+ +TW++ + GLA++G G+ L +FS M + + + VT
Sbjct: 292 LYAKCGDMDKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLKLFSLMKQDGVTPNAVT 351
Query: 165 YVGVLSACT 173
+V VL C+
Sbjct: 352 FVSVLRGCS 360
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 82/175 (46%), Gaps = 16/175 (9%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDG---YLRV 60
+ ++F ++ K+++SW T++ ++ G + YF + W + +L V
Sbjct: 691 SCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYF------NMSRWVGLKPDQATFLAV 744
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
R E + + R Q + + FN + + AL+D+Y K G +E + VF
Sbjct: 745 LRVCEDIGVVRLSQG-------IHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFL 797
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
++ D WTAM+ A G+G A+ F M+ + D VT+ +L+AC+H+
Sbjct: 798 EITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHS 852
>gi|297745510|emb|CBI40590.3| unnamed protein product [Vitis vinifera]
Length = 495
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 111/197 (56%), Gaps = 23/197 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ A + F M +DV +W ++++GY G ++ A + F MP R+ WTAMI GY +
Sbjct: 133 LSLARKQFDEMTVRDVPTWNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQN 192
Query: 61 NRFREALTLFREMQT-SNIRRDEFTTVRILTTFNN---------------------DIFV 98
++ +AL++F M+ + +R +E T +L N +++V
Sbjct: 193 GQYAKALSMFLMMEEETEMRPNEVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYV 252
Query: 99 GIALIDMYCKCGDVEKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
AL++MY +CG ++KA VF ++ R++ +W +MI+GLA+ G D A+++F +MLR
Sbjct: 253 SNALLEMYARCGRIDKAWGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREG 312
Query: 158 IRLDEVTYVGVLSACTH 174
D+VT+VGVL ACTH
Sbjct: 313 AAPDDVTFVGVLLACTH 329
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 75/195 (38%), Gaps = 53/195 (27%)
Query: 32 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM--QTSNIRRDEFTTV--- 86
+ A + F +P+ L+ +I Y + +L+ +M Q + FT +
Sbjct: 32 IPYAHKLFDFIPKPTVFLYNKLIQAYSSHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSA 91
Query: 87 ----------RILTT------FNNDIFVGIALIDMYCK---------------------- 108
R+L T F D+F AL+DMY K
Sbjct: 92 CASLSSHQQGRMLHTHFVKSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTW 151
Query: 109 ---------CGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS-I 158
CGD+E A +F M ++ +WTAMI G A +G AL MF M + +
Sbjct: 152 NSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEM 211
Query: 159 RLDEVTYVGVLSACT 173
R +EVT VL AC
Sbjct: 212 RPNEVTLASVLPACA 226
>gi|414879049|tpg|DAA56180.1| TPA: hypothetical protein ZEAMMB73_301223 [Zea mays]
Length = 534
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 66/192 (34%), Positives = 103/192 (53%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M +D S ++ GY G V AR+ F +MP +D V TAMI+GY + R
Sbjct: 199 ACRVFDEMPTRDTASSMVLIVGYCKCGLVQNARELFDKMPTKDLVARTAMINGYAQTGRP 258
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
+ AL LFR+++ + I D T V +++ + + V AL
Sbjct: 259 KVALALFRDLEAAGIEPDGATMVGVISAVSQIGSTELAGWVGAYVDRKKIERNEKVLTAL 318
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DM+ KCG++E+A F ++ R D + +TA+I GLA GH + AL +F +M I+
Sbjct: 319 VDMHAKCGNIEQALSAFREIPRPDAYPYTALISGLATHGHENLALSVFERMRAEDIKPHP 378
Query: 163 VTYVGVLSACTH 174
+T+VGVL+AC+H
Sbjct: 379 ITFVGVLTACSH 390
Score = 81.3 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 54/160 (33%), Positives = 74/160 (46%), Gaps = 18/160 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D +S+ +++ + V A FA MP R V W AM+ Y+ A +F EM
Sbjct: 148 DAVSFNSLLCAHARNASVRPAESLFAAMPTRTQVSWNAMVVLYVSAGDLAAACRVFDEMP 207
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
T RD ++ + LI YCKCG V+ A+ +F KM KD TAMI
Sbjct: 208 T----RDTASS--------------MVLIVGYCKCGLVQNARELFDKMPTKDLVARTAMI 249
Query: 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
G A +G AL +F + A I D T VGV+SA +
Sbjct: 250 NGYAQTGRPKVALALFRDLEAAGIEPDGATMVGVISAVSQ 289
>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
Length = 798
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 69/192 (35%), Positives = 99/192 (51%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F M V + ++ G+ RG VD A+ F +M ERD W+AMI Y +
Sbjct: 255 AAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFL 314
Query: 64 REALTLFREMQTSNIRRDEFTTVRILT---------------------TFNNDIFVGIAL 102
EAL+ FREM +R + + + ILT +F+ D+F AL
Sbjct: 315 MEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSAL 374
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I MY KCG+++KA+RVF KD W +MI G A G G+ AL +F M A + D
Sbjct: 375 ITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDG 434
Query: 163 VTYVGVLSACTH 174
+TY+G L+AC++
Sbjct: 435 ITYIGALTACSY 446
Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 49/150 (32%), Positives = 83/150 (55%), Gaps = 18/150 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+ +F M ++ +S+T ++ G ++ G+V+ AR+ F +MP+RD V WTAM+ GY + R
Sbjct: 131 AIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRI 190
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
EA LF EM N + A+I Y + G+V A+++F M
Sbjct: 191 TEARALFDEMPKRN------------------VVSWTAMISGYAQNGEVNLARKLFEVMP 232
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+++ +WTAM+VG +GH + A ++F+ M
Sbjct: 233 ERNEVSWTAMLVGYIQAGHVEDAAELFNAM 262
Score = 93.6 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 54/169 (31%), Positives = 85/169 (50%), Gaps = 18/169 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M ++V+SWT ++SGY G+V++AR+ F MPER+ V WTAM+ GY++
Sbjct: 193 ARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHV 252
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+A LF M + N + VG + + G V+ A+ VF KM
Sbjct: 253 EDAAELFNAMPEHPV------------AACNAMMVG------FGQRGMVDAAKTVFEKMC 294
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+D TW+AMI + AL F +ML +R + + + +L+ C
Sbjct: 295 ERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVC 343
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/174 (25%), Positives = 83/174 (47%), Gaps = 24/174 (13%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGY-INRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVN 61
AL +F M ++D+ S+ ++SG + R + A A +P V +T+++ GY+R
Sbjct: 67 ALGLFRRMPSRDLASYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHG 126
Query: 62 RFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWK 121
+A+ LF++M N + + +G L+D G V +A+R+F +
Sbjct: 127 LLADAIRLFQQMPERN-------------HVSYTVLLG-GLLD----AGRVNEARRLFDE 168
Query: 122 MLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
M +D WTAM+ G +G A +F +M + ++ V++ ++S N
Sbjct: 169 MPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNV----VSWTAMISGYAQN 218
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 17/140 (12%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA-LTLFREMQTSN----------- 77
G ++ AR F MP R + A++ GY R NR +A L LFR M + +
Sbjct: 31 GNIEGARAAFEAMPLRTTASYNALLAGYFR-NRLPDAALGLFRRMPSRDLASYNALISGL 89
Query: 78 -IRRDEFTTVRILTT---FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
+RR F + +L+ Y + G + A R+F +M ++ ++T +
Sbjct: 90 SLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVL 149
Query: 134 IVGLAISGHGDTALDMFSQM 153
+ GL +G + A +F +M
Sbjct: 150 LGGLLDAGRVNEARRLFDEM 169
>gi|317106614|dbj|BAJ53121.1| JHL07K02.11 [Jatropha curcas]
Length = 514
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 105/189 (55%), Gaps = 28/189 (14%)
Query: 14 KDVISWTTIVSG-------YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+ V SWT ++G ++ G+ +IA++ F +MP+RD V W +MI GY+R +F EA
Sbjct: 70 RQVFSWTVSLAGLNLVIDSFMRIGEYEIAKKVFCKMPDRDVVTWNSMIGGYVRNGKFEEA 129
Query: 67 LTLFREMQTSNIRRDEFTTVRILTT-----------FNNDIFV----------GIALIDM 105
L F+ M +SN+ D+FT ++T + +D+ V ALIDM
Sbjct: 130 LRSFQAMLSSNVEPDKFTFASVITACARLGALNHAQWLHDLMVQKRIEVNFILSSALIDM 189
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y KCG +E A+ VF + R D W ++I GLA+ G A+ +FS+M ++ D +T+
Sbjct: 190 YSKCGRIETAKEVFESVERNDVSVWNSLINGLAVHGLALDAMMVFSKMEAENVLPDSLTF 249
Query: 166 VGVLSACTH 174
+G+L AC+H
Sbjct: 250 LGILKACSH 258
>gi|345505206|gb|AEN99827.1| chlororespiratory reduction 4, partial [Aethionema grandiflorum]
Length = 594
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 69/191 (36%), Positives = 106/191 (55%), Gaps = 22/191 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M +DV++W T++ GY G V A+ F QM +RD V +M+ GY++ EA
Sbjct: 254 LFDVMPRRDVVTWATMIDGYAKLGFVHHAKSLFDQMHQRDVVACNSMMAGYVQNKYHMEA 313
Query: 67 LTLFREMQT-SNIRRDEFTTVRILTT----------FNNDIFV-----------GIALID 104
L +F +M+ S++ DE T V +L+ + +++ G+ALID
Sbjct: 314 LEIFNDMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMHVYIVEKRFPLGGKLGVALID 373
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVT 164
M+ KCG ++ A VF + K W AMI GLAI G G+ A DM Q+ R SI+ D +T
Sbjct: 374 MHSKCGSIQHAISVFEGIENKSIDHWNAMIGGLAIHGLGELAFDMLMQIERCSIQPDXIT 433
Query: 165 YVGVLSACTHN 175
++GVL+AC+H+
Sbjct: 434 FIGVLNACSHS 444
Score = 72.0 bits (175), Expect = 9e-11, Method: Composition-based stats.
Identities = 56/206 (27%), Positives = 91/206 (44%), Gaps = 53/206 (25%)
Query: 1 MGFALEIFGNMKNKD---------------------------------VISWTTIVSGYI 27
+GFA ++F M +D +ISW +++SGY
Sbjct: 152 LGFARQVFDRMPQRDSVSYNSMIDGYVKCGLMKSAHKLFDLMPREIKNLISWNSMISGYA 211
Query: 28 NRGQ-VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTV 86
++ A + F++MPE+D + W +MI+G ++ R +A LF M RRD T
Sbjct: 212 QTADGLNTASKLFSEMPEKDLISWNSMINGCVKHGRIEDAKGLFDVMP----RRDVVTWA 267
Query: 87 RILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTA 146
+ID Y K G V A+ +F +M ++D +M+ G + + A
Sbjct: 268 --------------TMIDGYAKLGFVHHAKSLFDQMHQRDVVACNSMMAGYVQNKYHMEA 313
Query: 147 LDMFSQMLRAS-IRLDEVTYVGVLSA 171
L++F+ M + S + DE T V VLSA
Sbjct: 314 LEIFNDMEKDSHLSPDETTLVIVLSA 339
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 17/145 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ ++ Y+ G + ARQ F +MP+RD V + +MIDGY++ + A LF M
Sbjct: 135 DLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLMKSAHKLFDLMP 194
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGD-VEKAQRVFWKMLRKDKFTWTAM 133
++ L ++N ++I Y + D + A ++F +M KD +W +M
Sbjct: 195 RE---------IKNLISWN-------SMISGYAQTADGLNTASKLFSEMPEKDLISWNSM 238
Query: 134 IVGLAISGHGDTALDMFSQMLRASI 158
I G G + A +F M R +
Sbjct: 239 INGCVKHGRIEDAKGLFDVMPRRDV 263
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 21/138 (15%)
Query: 39 FAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL--------- 89
F+ D LW A+I Y R AL LF M + + D+F+ +L
Sbjct: 58 FSAGEGEDPYLWNAVIKSYSHGIDPRRALLLFCLMIENGVCVDKFSLSLVLKACSRLEFL 117
Query: 90 ------------TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGL 137
T +D+F+ LI +Y KCG + A++VF +M ++D ++ +MI G
Sbjct: 118 KEGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGY 177
Query: 138 AISGHGDTALDMFSQMLR 155
G +A +F M R
Sbjct: 178 VKCGLMKSAHKLFDLMPR 195
>gi|296085287|emb|CBI29019.3| unnamed protein product [Vitis vinifera]
Length = 408
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 90/164 (54%), Gaps = 16/164 (9%)
Query: 11 MKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 70
M ++++SW +++SG++ G V+ A F++MP RD V W +M+ Y + + EAL LF
Sbjct: 1 MPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALF 60
Query: 71 REMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTW 130
+MQ + VG AL+DMY KCG + A +VF M KD W
Sbjct: 61 DQMQAVGVNS----------------IVGTALVDMYAKCGKISLATQVFNAMESKDVLAW 104
Query: 131 TAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+I G+AI GH A +F +M A + +++T+V +LSAC+H
Sbjct: 105 NTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDITFVAMLSACSH 148
Score = 42.4 bits (98), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 24/149 (16%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP----ERDYVLWTAMIDG 56
+ A ++F M++KDV++W TI++G G V A+Q F +M E + + + AM+
Sbjct: 86 ISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDITFVAMLSA 145
Query: 57 YLRVNRFREALTLFREMQTS---NIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVE 113
E L M +S + + + V ID+ + G +E
Sbjct: 146 CSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCV----------------IDLLARAGLLE 189
Query: 114 KAQRVFWKM-LRKDKFTWTAMIVGLAISG 141
+A + M + + A++ G I G
Sbjct: 190 EAMELIGTMPMEPNPCALGALLEGCRIHG 218
>gi|296084001|emb|CBI24389.3| unnamed protein product [Vitis vinifera]
Length = 665
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 106/189 (56%), Gaps = 21/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F + KDVISWTT+++G+ N+G++ + + F MP++D + WTA+I G++ + EA
Sbjct: 345 LFEKTQQKDVISWTTMITGFSNKGKMGKSIELFRMMPKQDDIAWTAVISGFVGNGEYEEA 404
Query: 67 LTLFREMQTSNIRRDEFTTVRILT------TFNN---------------DIFVGIALIDM 105
+ F EM +R + T +L+ T N D+ + +L+ M
Sbjct: 405 IYWFIEMLRKVVRPNPLTLSSVLSASAGLATLNQGLQIHTLVVKMGMEFDLSIQNSLVSM 464
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y KCG+V ++F + + ++ +MI G A +G G+ AL++F +ML + +E+T+
Sbjct: 465 YTKCGNVADGHQIFTSINSPNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPNEITF 524
Query: 166 VGVLSACTH 174
+GVLSACTH
Sbjct: 525 LGVLSACTH 533
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 83/155 (53%), Gaps = 22/155 (14%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A IF M +DVISW+++V GY +G++ AR+ F +MPER+ V WTAMIDG++++ +
Sbjct: 178 ATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFERMPERNVVTWTAMIDGHMKMGCY 237
Query: 64 REALTLFREMQTSNIRRDEFTTVRIL----------------------TTFNNDIFVGIA 101
LF M+ + TT+ ++ F D+F+G A
Sbjct: 238 EVGFGLFLRMRKEGFVKVNPTTLTVMFEACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNA 297
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVG 136
+I MYC+ V +A+++F M RKD +W A+I G
Sbjct: 298 IIIMYCRFSFVVEARKIFDMMNRKDVVSWNALIAG 332
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 1 MGFALEIF-GNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR 59
MGF ++F GN I+ Y V AR+ F M +D V W A+I GY++
Sbjct: 286 MGFEFDVFLGN----------AIIIMYCRFSFVVEARKIFDMMNRKDVVSWNALIAGYVQ 335
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119
+ E LF + Q ++D + ++T F+N G + K+ +F
Sbjct: 336 NDEVEEGYVLFEKTQ----QKDVISWTTMITGFSNK--------------GKMGKSIELF 377
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
M ++D WTA+I G +G + A+ F +MLR +R + +T VLSA
Sbjct: 378 RMMPKQDDIAWTAVISGFVGNGEYEEAIYWFIEMLRKVVRPNPLTLSSVLSA 429
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 91/221 (41%), Gaps = 53/221 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQ-------------------------- 37
A IF M +K+ ISWT +++ Y G + AR+
Sbjct: 50 AESIFSRMPHKNAISWTAMLTAYYENGHIAKARKMFEKMPQRTTASYNAMITAYTRSNPM 109
Query: 38 -------YFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT 90
FA+M ER+ + + AMI G R A L+ ++T RD + +++
Sbjct: 110 MIGEASKLFAEMRERNSISYAAMITGLARAGMVDNAEELY--LETPVEWRDPVCSNALIS 167
Query: 91 TF--------NNDIFVGI---------ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
+ IF G+ +++D YCK G + A+ +F +M ++ TWTAM
Sbjct: 168 GYLKVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFERMPERNVVTWTAM 227
Query: 134 IVGLAISGHGDTALDMFSQMLRAS-IRLDEVTYVGVLSACT 173
I G G + +F +M + ++++ T + AC+
Sbjct: 228 IDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLTVMFEACS 268
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 66/144 (45%), Gaps = 20/144 (13%)
Query: 9 GNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALT 68
GN K ++ + ++ + G + A F++MP ++ + WTAM+ Y +A
Sbjct: 24 GNRTTKFLVHCHSQITKHGRNGDLKEAESIFSRMPHKNAISWTAMLTAYYENGHIAKARK 83
Query: 69 LFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGD--VEKAQRVFWKMLRKD 126
+F +M R ++N A+I Y + + +A ++F +M ++
Sbjct: 84 MFEKMPQ-----------RTTASYN-------AMITAYTRSNPMMIGEASKLFAEMRERN 125
Query: 127 KFTWTAMIVGLAISGHGDTALDMF 150
++ AMI GLA +G D A +++
Sbjct: 126 SISYAAMITGLARAGMVDNAEELY 149
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
I + + GD+++A+ +F +M K+ +WTAM+ +GH A MF +M
Sbjct: 38 ITKHGRNGDLKEAESIFSRMPHKNAISWTAMLTAYYENGHIAKARKMFEKM 88
>gi|218192399|gb|EEC74826.1| hypothetical protein OsI_10663 [Oryza sativa Indica Group]
Length = 703
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 70/182 (38%), Positives = 94/182 (51%), Gaps = 22/182 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM- 73
D + W+ + Y G+VD AR+ F +MP RD V WTAM++ Y R E LF M
Sbjct: 201 DAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHML 260
Query: 74 QTSNIRRDEFTTVRIL--------TTFNNDI-------------FVGIALIDMYCKCGDV 112
+T +R +EFT +L +F + F AL+ MY KCGD+
Sbjct: 261 RTRGVRPNEFTYAGVLRACAEFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDM 320
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
A RVF M + D +WTA+I G A +G + AL F LR+ I+ D VT+VGVLSAC
Sbjct: 321 GSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSAC 380
Query: 173 TH 174
H
Sbjct: 381 AH 382
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 65/199 (32%), Positives = 97/199 (48%), Gaps = 31/199 (15%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRG--QVDIARQYFAQMPERDYVLWTAMIDGYLRVN 61
AL +F ++ D+ S T++S ++R + AR+ F +MP+RD+ W+A++ GY R
Sbjct: 82 ALALFSSIAAPDICSHNTLISA-LSRSPRHLPSARELFDRMPQRDHFAWSALVSGYARHG 140
Query: 62 RFREALTLFREMQT---SNIRRDEFTTV------------------------RILTTFNN 94
+ AL L+R MQ ++ +EFT R +
Sbjct: 141 QPEAALALYRRMQEEPGNDGADNEFTASSALAAAAAARCGRAGRELHCHVVRRGIDAAGG 200
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML 154
D + AL DMY KCG V+ A+RVF +M +D +WTAM+ G G +F ML
Sbjct: 201 DAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHML 260
Query: 155 RA-SIRLDEVTYVGVLSAC 172
R +R +E TY GVL AC
Sbjct: 261 RTRGVRPNEFTYAGVLRAC 279
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/144 (22%), Positives = 65/144 (45%), Gaps = 18/144 (12%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDG 56
MG A+ +F M D++SWT ++SGY GQ + A +YF D+V + ++
Sbjct: 320 MGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSA 379
Query: 57 YLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQ 116
+ L +F + ++++ + +ID+ + G E+A+
Sbjct: 380 CAHAGLVDKGLEIFHSI------KEQYCIEHTADHY-------ACVIDLLSRSGQFERAE 426
Query: 117 RVFWKM-LRKDKFTWTAMIVGLAI 139
++ M ++ +KF W +++ G I
Sbjct: 427 KMIGNMAVKPNKFLWASLLGGCRI 450
>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 641
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 70/182 (38%), Positives = 94/182 (51%), Gaps = 22/182 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM- 73
D + W+ + Y G+VD AR+ F +MP RD V WTAM++ Y R E LF M
Sbjct: 201 DAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHML 260
Query: 74 QTSNIRRDEFTTVRIL--------TTFNNDI-------------FVGIALIDMYCKCGDV 112
+T +R +EFT +L +F + F AL+ MY KCGD+
Sbjct: 261 RTRGVRPNEFTYAGVLRACAQFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDM 320
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
A RVF M + D +WTA+I G A +G + AL F LR+ I+ D VT+VGVLSAC
Sbjct: 321 GSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSAC 380
Query: 173 TH 174
H
Sbjct: 381 AH 382
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 65/201 (32%), Positives = 97/201 (48%), Gaps = 31/201 (15%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRG--QVDIARQYFAQMPERDYVLWTAMIDGYLRVN 61
AL +F ++ D+ S T++S ++R + AR+ F +MP+RD+ W+A++ GY R
Sbjct: 82 ALALFSSIAAPDICSHNTLISA-LSRSPRHLPSARELFDRMPQRDHFAWSALVSGYTRHG 140
Query: 62 RFREALTLFREMQT---SNIRRDEFTTV------------------------RILTTFNN 94
+ AL L+R MQ ++ +EFT R +
Sbjct: 141 QPEAALALYRRMQEEPGNDGADNEFTASSALAAAAAARCGRAGRELHCHVVRRGIDAAGG 200
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML 154
D + AL DMY KCG V+ A+RVF +M +D +WTAM+ G G +F ML
Sbjct: 201 DAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHML 260
Query: 155 RA-SIRLDEVTYVGVLSACTH 174
R +R +E TY GVL AC
Sbjct: 261 RTRGVRPNEFTYAGVLRACAQ 281
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/144 (22%), Positives = 65/144 (45%), Gaps = 18/144 (12%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDG 56
MG A+ +F M D++SWT ++SGY GQ + A +YF D+V + ++
Sbjct: 320 MGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSA 379
Query: 57 YLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQ 116
+ L +F + ++++ + +ID+ + G E+A+
Sbjct: 380 CAHAGLVDKGLEIFHSI------KEQYCIEHTADHY-------ACVIDLLSRSGQFERAE 426
Query: 117 RVFWKM-LRKDKFTWTAMIVGLAI 139
++ M ++ +KF W +++ G I
Sbjct: 427 KMIGNMAVKPNKFLWASLLGGCRI 450
>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
Length = 695
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 110/224 (49%), Gaps = 56/224 (25%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQ----------------------------------- 31
+F M NK+V+SW +++SGY+ GQ
Sbjct: 212 LFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGY 271
Query: 32 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT 91
+D A + F ++ E+D V WT M+ G + + +AL LFREM N+R D FT ++++
Sbjct: 272 IDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSS 331
Query: 92 ---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTW 130
++D+ V AL+DMY KCG+ A VF +ML ++ +W
Sbjct: 332 CARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISW 391
Query: 131 TAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+MI+G A +G AL ++ +ML +++ D +T+VGVLSAC H
Sbjct: 392 NSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMH 435
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 82/160 (51%), Gaps = 14/160 (8%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
+ V W + + Y G +D AR F +M ++ V W +MI GYL+ + LF EM
Sbjct: 188 ESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEM 247
Query: 74 QTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
Q+S + D+ T IL+ Y +CG +++A + F ++ KDK WT M
Sbjct: 248 QSSGLMPDQVTISNILSA--------------YFQCGYIDEACKTFREIKEKDKVCWTTM 293
Query: 134 IVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+VG A +G + AL +F +ML ++R D T V+S+C
Sbjct: 294 MVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCA 333
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 89/189 (47%), Gaps = 21/189 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +DV SW ++S Y G V+ R F QM D V + +I G+
Sbjct: 77 ARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCS 136
Query: 64 REALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIAL 102
+AL F MQ ++T V +L T+ +FV AL
Sbjct: 137 SQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNAL 196
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+MY KCG +++A+ +F +M+ K+ +W +MI G +G +T +F +M + + D+
Sbjct: 197 TNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQ 256
Query: 163 VTYVGVLSA 171
VT +LSA
Sbjct: 257 VTISNILSA 265
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML 154
D+F A++ Y K G+VE + VF +M D ++ +I G + +G AL+ F +M
Sbjct: 88 DVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQ 147
Query: 155 RASIRLDEVTYVGVLSACTH 174
+ T+V VL AC+
Sbjct: 148 EEGFESTDYTHVSVLHACSQ 167
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 22/132 (16%)
Query: 62 RFREALTLFREMQTSN-----------IRRDEFTTVRILTTF-------NNDIFVGIALI 103
R REA+ T+N +R ++ + L T D F+ L+
Sbjct: 6 RLREAIDALYSRGTANSESYTRLLLQCVRSNDVVQAKRLQTHMDLHLYQPTDTFLQNRLL 65
Query: 104 DMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEV 163
+Y K G++ A+ +F KM R+D F+W AM+ + SG+ + +F QM S+ D V
Sbjct: 66 HLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQM---SVH-DAV 121
Query: 164 TYVGVLSACTHN 175
+Y V++ + N
Sbjct: 122 SYNTVIAGFSGN 133
>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
Length = 666
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 62/192 (32%), Positives = 105/192 (54%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F ++DV+S+T ++ GY +RG ++ A++ F ++P +D V W AMI GY +
Sbjct: 145 AHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNY 204
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
+EAL LF++M +N+R DE T V +++ F +++ + AL
Sbjct: 205 KEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNAL 264
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
ID+Y KCG++E A +F + KD +W +I G AL +F +MLR+ ++
Sbjct: 265 IDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPND 324
Query: 163 VTYVGVLSACTH 174
VT + +L AC H
Sbjct: 325 VTMLSILPACAH 336
Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats.
Identities = 61/177 (34%), Positives = 95/177 (53%), Gaps = 23/177 (12%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
++ Y G+++ A F +P +D + W +I GY +N ++EAL LF+EM S +
Sbjct: 264 LIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPN 323
Query: 82 EFTTVRILTT---------------FNNDIFVGIA--------LIDMYCKCGDVEKAQRV 118
+ T + IL + + G+A LIDMY KCGD+E A +V
Sbjct: 324 DVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQV 383
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
F +L K +W AMI G A+ G D + D+FS+M + I D++T+VG+LSAC+H+
Sbjct: 384 FNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHS 440
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 18/130 (13%)
Query: 46 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDM 105
D + T++I Y++ R +A +F E + + D+ ALI
Sbjct: 125 DLYVHTSLISMYVQNGRLEDAHKVFDE------------------SPHRDVVSYTALIKG 166
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y G +E AQ++F ++ KD +W AMI G A +G+ AL++F M++ ++R DE T
Sbjct: 167 YASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTM 226
Query: 166 VGVLSACTHN 175
V V+SAC +
Sbjct: 227 VTVVSACAQS 236
>gi|218191827|gb|EEC74254.1| hypothetical protein OsI_09463 [Oryza sativa Indica Group]
Length = 788
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 67/183 (36%), Positives = 98/183 (53%), Gaps = 28/183 (15%)
Query: 19 WTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 78
WTT+VSGY + DIA++ F +MPE+D V WTA+I G++R R++EA+ LF EM+ +
Sbjct: 315 WTTMVSGYARAQEFDIAQRLFHEMPEKDTVAWTALIGGFVRAGRYKEAVVLFEEMEEAGF 374
Query: 79 RRDEFTTVRILTT----------------------FNNDIFVGIALIDMYCKCGDVEKAQ 116
DE T V +L+ N + + +DMY K G ++ AQ
Sbjct: 375 EADEATIVTVLSACVGYGSIDLAKRLHCLVGRDGLINRNAKLATTFVDMYAKHGCIQTAQ 434
Query: 117 RVFWKMLRKDKFT----WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
VF + D F + AMI GLA G+ A+ +F M +R D++T+VGVLSAC
Sbjct: 435 EVFSGV--DDDFKTLELFNAMINGLARCKFGEKAIALFDGMGSLGLRPDKITFVGVLSAC 492
Query: 173 THN 175
H+
Sbjct: 493 RHS 495
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 57/215 (26%), Positives = 84/215 (39%), Gaps = 57/215 (26%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV + +++ Y + G +AR F +MP RD V + +I Y++ +A +FR M
Sbjct: 174 DVFAANSLLHFYGSFGLHSLARNLFDEMPARDTVSFNTLISSYVQSCCINDAFEVFRIMV 233
Query: 75 TSNIRRDEFTTVRILTT--------------------FNNDIF----VGIALIDMYCKCG 110
S +R D +T +L +F V +L+D Y KC
Sbjct: 234 ESGLRPDGWTVTALLGACAELQDLRAVKAVHGVARRMLEPQVFHSGEVATSLVDAYVKCR 293
Query: 111 DVEK---------------------------------AQRVFWKMLRKDKFTWTAMIVGL 137
+E AQR+F +M KD WTA+I G
Sbjct: 294 GMELARQVFDLAEDNARNARLWTTMVSGYARAQEFDIAQRLFHEMPEKDTVAWTALIGGF 353
Query: 138 AISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+G A+ +F +M A DE T V VLSAC
Sbjct: 354 VRAGRYKEAVVLFEEMEEAGFEADEATIVTVLSAC 388
>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g14050, mitochondrial; Flags: Precursor
gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 612
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 61/193 (31%), Positives = 108/193 (55%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F +++ K+ ISWT +VSGY G+ + A + F +P ++ WTA+I G+++ +
Sbjct: 159 AKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKG 218
Query: 64 REALTLFREMQ----------------------TSNIRRDEFTTVRILTTFNNDIFVGIA 101
EA ++F EM+ ++I + + I F++ +F+ A
Sbjct: 219 LEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNA 278
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMY KC DV A+ +F +M +D +WT++IVG+A G + AL ++ M+ ++ +
Sbjct: 279 LIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPN 338
Query: 162 EVTYVGVLSACTH 174
EVT+VG++ AC+H
Sbjct: 339 EVTFVGLIYACSH 351
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 76/152 (50%), Gaps = 22/152 (14%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN-IR 79
T+V+ Y G A Q F +MP RD++ W +++ + N + L++F + +S+ +R
Sbjct: 43 TLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLR 102
Query: 80 RDEFTTVR---------------------ILTTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
D+F I++ + ND V +L+DMY KCG + A+ V
Sbjct: 103 PDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAV 162
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMF 150
F + K+ +WTAM+ G A SG + AL++F
Sbjct: 163 FDSIRVKNTISWTAMVSGYAKSGRKEEALELF 194
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 22/156 (14%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
++ Y V A+ F++M RD V WT++I G + + +AL L+ +M + ++ +
Sbjct: 279 LIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPN 338
Query: 82 EFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM-----LRKDKFTWTAMIVG 136
E T FVG LI G VEK + +F M +R +T ++
Sbjct: 339 EVT------------FVG--LIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDL 384
Query: 137 LAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
L SG D A ++ M DE T+ +LSAC
Sbjct: 385 LGRSGLLDEAENLIHTM---PFPPDEPTWAALLSAC 417
Score = 35.8 bits (81), Expect = 7.3, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISG-HGDTALDMFSQMLRASIRL 160
L+++Y KCG A +VF +M +D W +++ L + G T S + +R
Sbjct: 44 LVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRP 103
Query: 161 DEVTYVGVLSACTH 174
D+ + ++ AC +
Sbjct: 104 DDFVFSALVKACAN 117
>gi|218186152|gb|EEC68579.1| hypothetical protein OsI_36919 [Oryza sativa Indica Group]
Length = 586
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 64/191 (33%), Positives = 102/191 (53%), Gaps = 22/191 (11%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE 65
++F +M K+ + WT +VSGY + G+ + A Q F MP R+ WTA+I G +
Sbjct: 137 KVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVG 196
Query: 66 ALTLFREMQTSNIRRDEFTTVRILTT----------------------FNNDIFVGIALI 103
A+ LF EM+ +R D+ + I+ F +++ VG ALI
Sbjct: 197 AVELFVEMRRDGVRIDDAFVLSIVIGASADLAAFVLGRQLHGSAMRLGFLSNMIVGNALI 256
Query: 104 DMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEV 163
DMY KC D+ A+ VF + +D +WT M+VG A G + AL ++ +M+ A + +EV
Sbjct: 257 DMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEV 316
Query: 164 TYVGVLSACTH 174
T+VG++ AC+H
Sbjct: 317 TFVGLIYACSH 327
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 22/154 (14%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN-IRR 80
+VS Y + A F + P RD ++++++ AL + R M +++ +
Sbjct: 20 LVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAISHSASPELALPILRCMLSADALHP 79
Query: 81 DEFTTVRILTTF---------------------NNDIFVGIALIDMYCKCGDVEKAQRVF 119
D F + + F N D V +L+DMYCKCG + ++VF
Sbjct: 80 DHFVISSVASVFARLRSRRLGRQLHAHFVASPYNGDDVVKSSLVDMYCKCGSPDDGRKVF 139
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
M K+ WTA++ G A +G + AL +F M
Sbjct: 140 DSMSAKNSVVWTALVSGYASNGRSEEALQLFRSM 173
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 43/144 (29%), Positives = 65/144 (45%), Gaps = 22/144 (15%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN 94
AR+ F + RD + WT M+ G + R EAL L+ M + + +E T
Sbjct: 268 AREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVT---------- 317
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT-----WTAMIVGLAISGHGDTALDM 149
FVG LI G V+K +++F M + T +T + L+ SGH A ++
Sbjct: 318 --FVG--LIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEEL 373
Query: 150 FSQMLRASIRLDEVTYVGVLSACT 173
+ M DE T+ +LSACT
Sbjct: 374 MTTM---PYEPDEATWGALLSACT 394
>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 610
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 64/191 (33%), Positives = 102/191 (53%), Gaps = 22/191 (11%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE 65
++F +M K+ + WT +VSGY + G+ + A Q F MP R+ WTA+I G +
Sbjct: 161 KVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVG 220
Query: 66 ALTLFREMQTSNIRRDEFTTVRILTT----------------------FNNDIFVGIALI 103
A+ LF EM+ +R D+ + I+ F +++ VG ALI
Sbjct: 221 AVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALI 280
Query: 104 DMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEV 163
DMY KC D+ A+ VF + +D +WT M+VG A G + AL ++ +M+ A + +EV
Sbjct: 281 DMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEV 340
Query: 164 TYVGVLSACTH 174
T+VG++ AC+H
Sbjct: 341 TFVGLIYACSH 351
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 22/154 (14%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN-IRR 80
+VS Y + A F + P RD ++++++ AL + R M +++ +
Sbjct: 44 LVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADALHP 103
Query: 81 DEFTTVRILTTF---------------------NNDIFVGIALIDMYCKCGDVEKAQRVF 119
D F + + F N D V +L+DMYCKCG + ++VF
Sbjct: 104 DHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKVF 163
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
M K+ WTA++ G A +G + AL +F M
Sbjct: 164 DSMSAKNSVVWTALVSGYASNGRSEEALQLFRSM 197
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 43/144 (29%), Positives = 65/144 (45%), Gaps = 22/144 (15%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN 94
AR+ F + RD + WT M+ G + R EAL L+ M + + +E T
Sbjct: 292 AREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVT---------- 341
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT-----WTAMIVGLAISGHGDTALDM 149
FVG LI G V+K +++F M + T +T + L+ SGH A ++
Sbjct: 342 --FVG--LIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEEL 397
Query: 150 FSQMLRASIRLDEVTYVGVLSACT 173
+ M DE T+ +LSACT
Sbjct: 398 MTTM---PYEPDEATWGALLSACT 418
>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 692
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 64/191 (33%), Positives = 102/191 (53%), Gaps = 22/191 (11%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE 65
++F +M K+ + WT +VSGY + G+ + A Q F MP R+ WTA+I G +
Sbjct: 243 KVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVG 302
Query: 66 ALTLFREMQTSNIRRDEFTTVRILTT----------------------FNNDIFVGIALI 103
A+ LF EM+ +R D+ + I+ F +++ VG ALI
Sbjct: 303 AVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALI 362
Query: 104 DMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEV 163
DMY KC D+ A+ VF + +D +WT M+VG A G + AL ++ +M+ A + +EV
Sbjct: 363 DMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEV 422
Query: 164 TYVGVLSACTH 174
T+VG++ AC+H
Sbjct: 423 TFVGLIYACSH 433
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 22/154 (14%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN-IRR 80
+VS Y + A F + P RD ++++++ AL + R M +++ +
Sbjct: 126 LVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADALHP 185
Query: 81 DEFTTVRILTTF---------------------NNDIFVGIALIDMYCKCGDVEKAQRVF 119
D F + + F N D V +L+DMYCKCG + ++VF
Sbjct: 186 DHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKVF 245
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
M K+ WTA++ G A +G + AL +F M
Sbjct: 246 DSMSAKNSVVWTALVSGYASNGRSEEALQLFRSM 279
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 43/144 (29%), Positives = 65/144 (45%), Gaps = 22/144 (15%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN 94
AR+ F + RD + WT M+ G + R EAL L+ M + + +E T
Sbjct: 374 AREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVT---------- 423
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT-----WTAMIVGLAISGHGDTALDM 149
FVG LI G V+K +++F M + T +T + L+ SGH A ++
Sbjct: 424 --FVG--LIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEEL 479
Query: 150 FSQMLRASIRLDEVTYVGVLSACT 173
+ M DE T+ +LSACT
Sbjct: 480 MTTM---PYEPDEATWGALLSACT 500
>gi|357118276|ref|XP_003560882.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 508
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 100/193 (51%), Gaps = 21/193 (10%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A ++F ++KD++ W +V+ Y G+++ AR + PE+D V W +I GY
Sbjct: 181 IARQLFDECQHKDLVCWNVMVAAYAKYGEMEKARGLLDRAPEKDVVSWNTIITGYTAKGL 240
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIA 101
+EAL + EM+ + DE T V +L+ N I G A
Sbjct: 241 LKEALEVLDEMRCVGLMPDEATIVSLLSCCANLGSLGTGRMIHSLHLEGRPCISILPGNA 300
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+ MY KCGDV+ A VF +M +D +TW ++I GLA G + ++ F++ML + +
Sbjct: 301 LVSMYAKCGDVQAAMEVFSRMKERDVWTWNSIIGGLAFHGQAEQSVQFFNKMLDEGLCPN 360
Query: 162 EVTYVGVLSACTH 174
E++++ VL AC+H
Sbjct: 361 EISFLCVLGACSH 373
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 21/144 (14%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G +D AR+ F + D + M+ GY A L+R ++ + ++ D FT +L
Sbjct: 45 GGMDYARKVFDGISHPDLFMHNVMVRGYAHSAAPAAAFVLYRRIEAARLKPDSFTFCYLL 104
Query: 90 TT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
+ D FV ALI+M+ KCGD+ A + + +D
Sbjct: 105 RACAGLPGSCAGYQVHGAVVKLGYFKDAFVRNALINMHAKCGDLLVAGTLLDEAGERDVV 164
Query: 129 TWTAMIVGLAISGHGDTALDMFSQ 152
+A+I G A G D A +F +
Sbjct: 165 ARSAVIAGHAAKGELDIARQLFDE 188
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 66/161 (40%), Gaps = 18/161 (11%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
KD +++ + G + +A + ERD V +A+I G+ A LF E
Sbjct: 130 KDAFVRNALINMHAKCGDLLVAGTLLDEAGERDVVARSAVIAGHAAKGELDIARQLFDEC 189
Query: 74 QTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
Q + D+ ++ Y K G++EKA+ + + KD +W +
Sbjct: 190 Q------------------HKDLVCWNVMVAAYAKYGEMEKARGLLDRAPEKDVVSWNTI 231
Query: 134 IVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
I G G AL++ +M + DE T V +LS C +
Sbjct: 232 ITGYTAKGLLKEALEVLDEMRCVGLMPDEATIVSLLSCCAN 272
>gi|242061948|ref|XP_002452263.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
gi|241932094|gb|EES05239.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
Length = 603
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 65/198 (32%), Positives = 101/198 (51%), Gaps = 28/198 (14%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F + +D ++WT+++SGY ++D A Q F MP++D V WTA+I G+ +
Sbjct: 230 ARHLFDQISIRDNVTWTSMISGYCQVKKLDEALQVFDMMPDKDRVAWTALISGHEQNGEE 289
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT--------------------------FNNDIF 97
AL LF M + F V +L FN IF
Sbjct: 290 DTALELFERMLAEGVSPTTFALVSVLGACAKLGLVTRGKELHCSILRRSIGSDPFN--IF 347
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
+ AL+DMY KCGD+ A VF +M +D +W +M+ G + +G G +L +F +ML A
Sbjct: 348 IHNALVDMYSKCGDMTAAMAVFHRMPERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAG 407
Query: 158 IRLDEVTYVGVLSACTHN 175
+R VT++ VL+AC+H+
Sbjct: 408 VRPTHVTFLAVLTACSHS 425
>gi|297737154|emb|CBI26355.3| unnamed protein product [Vitis vinifera]
Length = 550
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 106/196 (54%), Gaps = 22/196 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQ-VDIARQYFAQMPERDYVLWTAMIDGYLR 59
M A +F +M KD+ SW +VSGY++ G + AR F QMP ++ V W+ MI GY R
Sbjct: 183 MAEAQVLFDSMPVKDLASWNVMVSGYMDIGDYTNGARCLFDQMPMKNLVTWSTMIGGYAR 242
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTTFN---------------------NDIFV 98
+ +AL LF + +I+ DE + I++ + +D+ V
Sbjct: 243 NGQPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLSDLRV 302
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
+LIDMY KCG +EKA ++F KD ++ MI LA G G A+ +F +M RA+I
Sbjct: 303 FTSLIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANI 362
Query: 159 RLDEVTYVGVLSACTH 174
+ D VT++GVL+AC H
Sbjct: 363 KPDSVTFLGVLTACNH 378
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 92/174 (52%), Gaps = 22/174 (12%)
Query: 2 GFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVN 61
GFA F M KD++SW ++SGY N +VDIAR++F +MPER+ V WT+MI GY++
Sbjct: 125 GFA---FDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAG 181
Query: 62 RFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQR-VFW 120
EA LF M V+ L ++N ++ Y GD R +F
Sbjct: 182 DMAEAQVLFDSM-----------PVKDLASWN-------VMVSGYMDIGDYTNGARCLFD 223
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+M K+ TW+ MI G A +G AL++F + I+ DE +G++SAC+
Sbjct: 224 QMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFILGIISACSQ 277
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%)
Query: 97 FVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156
FV L+ +Y + G + A +VF ++ + + + WT++I G + D A +F QM R
Sbjct: 36 FVINKLLRLYSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRRE 95
Query: 157 SIRLDEVTYVGVLSA 171
I + T VL A
Sbjct: 96 PISVLNFTISSVLKA 110
>gi|255548950|ref|XP_002515531.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545475|gb|EEF46980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 397
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 106/186 (56%), Gaps = 23/186 (12%)
Query: 13 NKDVISWTTIVSGYI-NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFR 71
+ DV T+V Y R ++ AR+ F +M +RD V W+AMI GY R+ R +A+ LFR
Sbjct: 168 DNDVHVQNTMVHMYCCGRDGIEFAREVFDEMCKRDPVSWSAMIGGYARLGRCSDAIDLFR 227
Query: 72 EMQTSNI-RRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKC 109
EMQ + R DE T V +L+ + + + ALIDM+ KC
Sbjct: 228 EMQIEGVCRPDEITMVSVLSACTDLGALELGKWVESYIEKEKVQKSVELCNALIDMFAKC 287
Query: 110 GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVL 169
GDV+KA ++F M + +WT++I GLA+ G G A++ F +M+++ + D+V ++G+L
Sbjct: 288 GDVDKAIKLFRNMKDRTIVSWTSVIAGLAMHGRGLEAVEFFEEMIKSGVLPDDVAFIGLL 347
Query: 170 SACTHN 175
SAC+H+
Sbjct: 348 SACSHS 353
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 84/185 (45%), Gaps = 33/185 (17%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDY-----VLWTAMIDGYLRVNRFRE--ALTLFRE 72
T S N +D A + PE D L+ +I Y N + AL +++
Sbjct: 68 TKYTSTSSNLHAIDYASSFIFS-PESDKRLYDTFLFNTIIRAYAHSNNVSKGKALCMYKL 126
Query: 73 MQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCG- 110
M ++ ++FT +L F+ND+ V ++ MYC CG
Sbjct: 127 MLEYDVLPNKFTYPFVLKACAGIGYLNLGKSVHGSVLKFGFDNDVHVQNTMVHMYC-CGR 185
Query: 111 -DVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM-LRASIRLDEVTYVGV 168
+E A+ VF +M ++D +W+AMI G A G A+D+F +M + R DE+T V V
Sbjct: 186 DGIEFAREVFDEMCKRDPVSWSAMIGGYARLGRCSDAIDLFREMQIEGVCRPDEITMVSV 245
Query: 169 LSACT 173
LSACT
Sbjct: 246 LSACT 250
Score = 36.2 bits (82), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYLR 59
A+++F NMK++ ++SWT++++G G+ A ++F +M + D V + ++
Sbjct: 293 AIKLFRNMKDRTIVSWTSVIAGLAMHGRGLEAVEFFEEMIKSGVLPDDVAFIGLLSACSH 352
Query: 60 ---VNRFREALTLFRE 72
V++ RE L RE
Sbjct: 353 SGLVDKGREYFDLMRE 368
>gi|15217517|ref|NP_174603.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75168867|sp|Q9C501.1|PPR70_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g33350
gi|12322383|gb|AAG51215.1|AC051630_12 unknown protein; 15445-13829 [Arabidopsis thaliana]
gi|12322567|gb|AAG51281.1|AC027035_4 PPR-repeat protein, putative [Arabidopsis thaliana]
gi|332193465|gb|AEE31586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 538
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 67/198 (33%), Positives = 108/198 (54%), Gaps = 27/198 (13%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A ++F M ++V+SWT ++SGY G + A F MPERD W A++ +
Sbjct: 180 LARQLFDEMSERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGL 239
Query: 63 FREALTLFREM-QTSNIRRDEFTTVRILTT---------------------FNNDIFVGI 100
F EA++LFR M +IR +E T V +L+ ++D+FV
Sbjct: 240 FLEAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSN 299
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFT-WTAMIVGLAISGHGDTALDMFSQMLRAS-- 157
+L+D+Y KCG++E+A VF KM K T W +MI A+ G + A+ +F +M++ +
Sbjct: 300 SLVDLYGKCGNLEEASSVF-KMASKKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNIN 358
Query: 158 -IRLDEVTYVGVLSACTH 174
I+ D +T++G+L+ACTH
Sbjct: 359 DIKPDHITFIGLLNACTH 376
>gi|359479080|ref|XP_003632211.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
mitochondrial [Vitis vinifera]
Length = 744
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 106/189 (56%), Gaps = 21/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F + KDVISWTT+++G+ N+G++ + + F MP++D + WTA+I G++ + EA
Sbjct: 424 LFEKTQQKDVISWTTMITGFSNKGKMGKSIELFRMMPKQDDIAWTAVISGFVGNGEYEEA 483
Query: 67 LTLFREMQTSNIRRDEFTTVRILT------TFNN---------------DIFVGIALIDM 105
+ F EM +R + T +L+ T N D+ + +L+ M
Sbjct: 484 IYWFIEMLRKVVRPNPLTLSSVLSASAGLATLNQGLQIHTLVVKMGMEFDLSIQNSLVSM 543
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y KCG+V ++F + + ++ +MI G A +G G+ AL++F +ML + +E+T+
Sbjct: 544 YTKCGNVADGHQIFTSINSPNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPNEITF 603
Query: 166 VGVLSACTH 174
+GVLSACTH
Sbjct: 604 LGVLSACTH 612
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 83/155 (53%), Gaps = 22/155 (14%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A IF M +DVISW+++V GY +G++ AR+ F +MPER+ V WTAMIDG++++ +
Sbjct: 257 ATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFERMPERNVVTWTAMIDGHMKMGCY 316
Query: 64 REALTLFREMQTSNIRRDEFTTVRIL----------------------TTFNNDIFVGIA 101
LF M+ + TT+ ++ F D+F+G A
Sbjct: 317 EVGFGLFLRMRKEGFVKVNPTTLTVMFEACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNA 376
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVG 136
+I MYC+ V +A+++F M RKD +W A+I G
Sbjct: 377 IIIMYCRFSFVVEARKIFDMMNRKDVVSWNALIAG 411
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 29/174 (16%)
Query: 1 MGFALEIF-GNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR 59
MGF ++F GN I+ Y V AR+ F M +D V W A+I GY++
Sbjct: 365 MGFEFDVFLGN----------AIIIMYCRFSFVVEARKIFDMMNRKDVVSWNALIAGYVQ 414
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119
+ E LF + Q ++D + ++T F+N G + K+ +F
Sbjct: 415 NDEVEEGYVLFEKTQ----QKDVISWTTMITGFSNK--------------GKMGKSIELF 456
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
M ++D WTA+I G +G + A+ F +MLR +R + +T VLSA
Sbjct: 457 RMMPKQDDIAWTAVISGFVGNGEYEEAIYWFIEMLRKVVRPNPLTLSSVLSASA 510
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 91/221 (41%), Gaps = 53/221 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQ-------------------------- 37
A IF M +K+ ISWT +++ Y G + AR+
Sbjct: 129 AESIFSRMPHKNAISWTAMLTAYYENGHIAKARKMFEKMPQRTTASYNAMITAYTRSNPM 188
Query: 38 -------YFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT 90
FA+M ER+ + + AMI G R A L+ ++T RD + +++
Sbjct: 189 MIGEASKLFAEMRERNSISYAAMITGLARAGMVDNAEELY--LETPVEWRDPVCSNALIS 246
Query: 91 TF--------NNDIFVGI---------ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
+ IF G+ +++D YCK G + A+ +F +M ++ TWTAM
Sbjct: 247 GYLKVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFERMPERNVVTWTAM 306
Query: 134 IVGLAISGHGDTALDMFSQMLRAS-IRLDEVTYVGVLSACT 173
I G G + +F +M + ++++ T + AC+
Sbjct: 307 IDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLTVMFEACS 347
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 66/144 (45%), Gaps = 20/144 (13%)
Query: 9 GNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALT 68
GN K ++ + ++ + G + A F++MP ++ + WTAM+ Y +A
Sbjct: 103 GNRTTKFLVHCHSQITKHGRNGDLKEAESIFSRMPHKNAISWTAMLTAYYENGHIAKARK 162
Query: 69 LFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGD--VEKAQRVFWKMLRKD 126
+F +M R ++N A+I Y + + +A ++F +M ++
Sbjct: 163 MFEKMPQ-----------RTTASYN-------AMITAYTRSNPMMIGEASKLFAEMRERN 204
Query: 127 KFTWTAMIVGLAISGHGDTALDMF 150
++ AMI GLA +G D A +++
Sbjct: 205 SISYAAMITGLARAGMVDNAEELY 228
Score = 39.3 bits (90), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
I + + GD+++A+ +F +M K+ +WTAM+ +GH A MF +M
Sbjct: 117 ITKHGRNGDLKEAESIFSRMPHKNAISWTAMLTAYYENGHIAKARKMFEKM 167
>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
Length = 662
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 68/197 (34%), Positives = 105/197 (53%), Gaps = 23/197 (11%)
Query: 1 MGFALEIFGNMKNK-DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR 59
M A E F N K D + WT +VSGY++ G V A +YF MP R+ V W A++ GY++
Sbjct: 207 MSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVK 266
Query: 60 VNRFREALTLFREM-QTSNIRRDEFTTVRILTTFNN---------------------DIF 97
+ +AL LFR M + +N++ + T +L +N ++
Sbjct: 267 NSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLT 326
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
VG +L+ MYCKCGD+ A ++F +M +D W AMI G A G G A+++F +M
Sbjct: 327 VGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEG 386
Query: 158 IRLDEVTYVGVLSACTH 174
+ + +T+V VL+AC H
Sbjct: 387 VEPNWITFVAVLTACIH 403
Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 22/118 (18%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T++VS Y G + A + F +M RD V W AMI GY + +EA+ LF M+ +
Sbjct: 329 TSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVE 388
Query: 80 RDEFTTVRILTT--------FNNDIFVGI--------------ALIDMYCKCGDVEKA 115
+ T V +LT F F G+ ++D+ C+ G +E+A
Sbjct: 389 PNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERA 446
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 20/141 (14%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR-VNRFREALTLFREMQTSNI 78
T V+ + RG + A + FA P + + ++ GY R + R +A LF + T +
Sbjct: 70 TVAVAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPTPDA 129
Query: 79 RRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLA 138
++N L+ + GD + A+R+F M +D +W M+ GL+
Sbjct: 130 -----------VSYN-------TLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLS 171
Query: 139 ISGHGDTALDMFSQM-LRASI 158
SG + A +F M +R S+
Sbjct: 172 KSGAVEEAKAVFLAMPVRNSV 192
>gi|357143748|ref|XP_003573036.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Brachypodium distachyon]
Length = 484
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 104/193 (53%), Gaps = 21/193 (10%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A+++F +M ++ V+++ T+++G + G V AR+ F +MP D V WTA+IDG ++ R
Sbjct: 124 LAIKLFDSMPDRSVVTYNTMITGLMRNGLVAAAREVFDEMPAPDKVSWTALIDGCVKNGR 183
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIA 101
EA+ F M + D T V ++ +++ V +
Sbjct: 184 HDEAIDCFHSMLRDGVEPDYVTLVAAISACAEVGALGLGMWVHRFVVDKRLEHNVRVANS 243
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMY +CG V+ A++VF ++ ++ +W +MIVG A +G A++ F M R + D
Sbjct: 244 LIDMYARCGQVDFARQVFGRIRKRTVVSWNSMIVGFAANGQYADAVEHFEAMRREGFKPD 303
Query: 162 EVTYVGVLSACTH 174
VT+ GVL+AC+H
Sbjct: 304 TVTFTGVLTACSH 316
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 24/160 (15%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP----ERDYVLWTAMIDGYL 58
FA ++FG ++ + V+SW +++ G+ GQ A ++F M + D V +T ++
Sbjct: 256 FARQVFGRIRKRTVVSWNSMIVGFAANGQYADAVEHFEAMRREGFKPDTVTFTGVLTACS 315
Query: 59 RVNRFREALTLFREMQTSN---IRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKA 115
E L + M+T + R + + V +D+ + G + +A
Sbjct: 316 HAGLTDEGLRYYDAMRTEHGIAARMEHYGCV----------------VDLLGRAGRLGEA 359
Query: 116 QRVFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQML 154
RV M +R ++ A++ G + G D A + +L
Sbjct: 360 MRVVESMPMRPNEVVLGALLAGCRMHGDVDLAEQLMQHLL 399
>gi|242082435|ref|XP_002445986.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
gi|241942336|gb|EES15481.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
Length = 567
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 63/170 (37%), Positives = 90/170 (52%), Gaps = 18/170 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +FG M ++V+S+TT+V G RG+V AR+ F MP+R+ V W AMI GY+ F
Sbjct: 130 ADRLFGEMPKRNVVSYTTMVDGLARRGEVARAREVFDAMPDRNLVSWAAMISGYVENGMF 189
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
EA LF M N + A+I YCK GDVE A+R+F +
Sbjct: 190 VEATKLFEAMPEKN------------------VVACTAMITSYCKQGDVESARRLFDGIR 231
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
KD +W MI G +GHG+ A+ + + M R ++ D T + VL+AC+
Sbjct: 232 AKDVISWNTMIAGYVHNGHGEEAMRLHAVMFREGVKPDHATLIAVLTACS 281
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M K+V++ T +++ Y +G V+ AR+ F + +D + W MI GY+
Sbjct: 192 ATKLFEAMPEKNVVACTAMITSYCKQGDVESARRLFDGIRAKDVISWNTMIAGYVHNGHG 251
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
EA+ L M ++ D T + +LT + I AL
Sbjct: 252 EEAMRLHAVMFREGVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAMLESGISFSNAL 311
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+ MY KCG+V +++ VF + KD +W +I A G + +F +M + D+
Sbjct: 312 MTMYSKCGNVGESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEMTGLIPDD 371
Query: 163 VTYVGVLSACTH 174
+T++ VLSAC H
Sbjct: 372 ITFLSVLSACGH 383
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 59/138 (42%), Gaps = 19/138 (13%)
Query: 23 VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFR--EALTLFREMQTSNIRR 80
+S G V AR+ F MP RD V W A++ R R A LF
Sbjct: 22 ISALARAGDVAAARRVFDAMPHRDVVSWNALLTALWRAGRHHLPAARRLF---------- 71
Query: 81 DEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAIS 140
DE R + ++N+ I +A GD++ A F +++ TW AM+ GL
Sbjct: 72 DEAMPSRDVVSWNSIIAGCLAH-------GDLDAASAYFAGAPKRNVATWNAMLAGLLRL 124
Query: 141 GHGDTALDMFSQMLRASI 158
G D A +F +M + ++
Sbjct: 125 GRADDADRLFGEMPKRNV 142
>gi|357148182|ref|XP_003574661.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 553
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 91/173 (52%), Gaps = 18/173 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +FG M ++V+S+TT+V G RG+V AR+ F MPER+ V W AMI GY+
Sbjct: 117 MDDAWALFGEMPQRNVVSYTTMVDGLARRGEVARAREVFDAMPERNLVSWAAMITGYVEN 176
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
F EA LF M N + A+I YCK GDVE A+R+F
Sbjct: 177 AMFDEARKLFEAMPDKN------------------VVACTAMITGYCKDGDVESARRLFD 218
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+ KD +W AMI G +GHG+ A+ + M R ++ D T + +L+AC+
Sbjct: 219 GIPVKDVISWNAMITGYVHNGHGEEAMKLHIIMFREGVKPDHATLIAILTACS 271
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +K+V++ T +++GY G V+ AR+ F +P +D + W AMI GY+
Sbjct: 182 ARKLFEAMPDKNVVACTAMITGYCKDGDVESARRLFDGIPVKDVISWNAMITGYVHNGHG 241
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
EA+ L M ++ D T + ILT + AL
Sbjct: 242 EEAMKLHIIMFREGVKPDHATLIAILTACSALALLRQGRSTHAVATKTMLESSTSFCNAL 301
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+ MY KCG+V +++ VF + +D +W +I A G A+ +F +M + ++
Sbjct: 302 MTMYSKCGNVGESELVFMNLKIQDIVSWNTIIAAYAQHGKYQKAIALFHEMETRGLIPND 361
Query: 163 VTYVGVLSACTH 174
+T + +LSAC H
Sbjct: 362 ITILSMLSACGH 373
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 19/130 (14%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR-FREALTLFREMQTSNIRRDEFTTVRI 88
G V AR+ F MP RD V W A++ R R A LF +M + N+
Sbjct: 21 GDVAAARRVFDAMPRRDVVSWNALLTALWRAGRDLPAARRLFDDMPSRNV---------- 70
Query: 89 LTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALD 148
++N+ + +A GD++ A F + R++ +W AM+ GL G D A
Sbjct: 71 -ISWNSVVAGCLAH-------GDLDAASAYFARAPRRNVASWNAMLAGLVRLGRMDDAWA 122
Query: 149 MFSQMLRASI 158
+F +M + ++
Sbjct: 123 LFGEMPQRNV 132
>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g40405
gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 612
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 100/189 (52%), Gaps = 21/189 (11%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE 65
++F ++ D + T +V+ G V AR+ F MPERD + W AMI GY +V RE
Sbjct: 164 KVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESRE 223
Query: 66 ALTLFREMQTSNIRRDEFTTVRILTTFN-----------------NDIFVGI----ALID 104
AL +F MQ ++ + + +L+ N I + + L+D
Sbjct: 224 ALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVD 283
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVT 164
+Y KCGD+EKA VFW M K+ +TW++ + GLA++G G+ L++FS M + + + VT
Sbjct: 284 LYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVT 343
Query: 165 YVGVLSACT 173
+V VL C+
Sbjct: 344 FVSVLRGCS 352
>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Cucumis sativus]
gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Cucumis sativus]
Length = 724
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 63/183 (34%), Positives = 94/183 (51%), Gaps = 21/183 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ D + W +++ Y G ++ AR F +M ERD V WT MI YL+ R E LFR
Sbjct: 283 DSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRH 342
Query: 73 MQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGD 111
+ SNI ++FT +L F++ AL+ MY KCGD
Sbjct: 343 LMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGD 402
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+E A+ VF + + D F+WT+++VG A G D AL F +L++ + D + ++GVLSA
Sbjct: 403 IENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSA 462
Query: 172 CTH 174
C H
Sbjct: 463 CAH 465
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 60/191 (31%), Positives = 99/191 (51%), Gaps = 22/191 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M ++D+ SW ++SGY+ G + AR F +MP RD WTA+I G ++ NR
Sbjct: 172 AEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNRDNFSWTAIISGCVQHNRP 231
Query: 64 REALTLFREMQTSNIRRDEFTTVR----------------------ILTTFNNDIFVGIA 101
EAL L+R MQ + + T+ + ++D V +
Sbjct: 232 EEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCS 291
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+DMY KCG +E+A+ +F KM +D +WT MI +G + +F ++ ++I +
Sbjct: 292 LLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPN 351
Query: 162 EVTYVGVLSAC 172
+ T+ GVL+AC
Sbjct: 352 DFTFAGVLNAC 362
Score = 52.8 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
I T+ + +++ L+DMY KCG + A++VF +M+ +D +W MI G G+ + A
Sbjct: 145 IKTSGSIGLYISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKAR 204
Query: 148 DMFSQMLRASIRLDEVTYVGVLSACT-HN 175
++F +M D ++ ++S C HN
Sbjct: 205 NLFDKMPNR----DNFSWTAIISGCVQHN 229
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 30/148 (20%), Positives = 64/148 (43%), Gaps = 18/148 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQM----PERDYVLWTAMIDGYLR 59
A +F + D+ SWT+++ GY GQ D A +F + + D + + ++
Sbjct: 406 AKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAH 465
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119
+ L F + +++ R + + +ID+ + G +A+ +
Sbjct: 466 AGLVDKGLEYFHSI------KEKHGLTRTIDHY-------ACIIDLLARAGQFTEAESII 512
Query: 120 WKM-LRKDKFTWTAMIVGLAISGHGDTA 146
+M ++ DK+ W A++ G I G+ + A
Sbjct: 513 NEMPIKPDKYIWAALLGGCRIHGNLELA 540
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT 85
Y G + A + F +M RD W MI GY++ F +A LF +M RD F+
Sbjct: 163 YAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPN----RDNFSW 218
Query: 86 VRILT 90
I++
Sbjct: 219 TAIIS 223
>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 63/196 (32%), Positives = 104/196 (53%), Gaps = 24/196 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F + + D +SWT+++SGY G +D A F MP+++ W AM+ Y++ NRF
Sbjct: 176 ARRVFHTIPHPDSVSWTSLISGYSKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRF 235
Query: 64 REALTLFREMQTSNIR-RDEFTTVRILTTFNN---------------------DIFVGIA 101
EA LF M+ N D+F +L+ D + A
Sbjct: 236 HEAFALFDRMKAENNNVLDKFVATTMLSACTGLGALDQGKWIHEYIKRNGIELDSKLTTA 295
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKF--TWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
++DMYCKCG +EKA +VF + ++ +W MI GLA+ G+G+ A+ +F +M R +
Sbjct: 296 IVDMYCKCGCLEKALQVFHSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVA 355
Query: 160 LDEVTYVGVLSACTHN 175
D++T++ +L+AC H+
Sbjct: 356 PDDITFLNLLTACAHS 371
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 20/139 (14%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRF--REALTLFREMQTSNIRRDEFTTVRILTT- 91
A + F +P+ D L+ +I G+L L L+ M +++ + FT +L
Sbjct: 76 ALKLFDSIPQPDAFLYNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIAC 135
Query: 92 -----------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
F +LI MY +E+A+RVF + D +WT++I
Sbjct: 136 RKIQHGMQIHAHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLI 195
Query: 135 VGLAISGHGDTALDMFSQM 153
G + G D A +F M
Sbjct: 196 SGYSKWGLIDEAFTIFQLM 214
>gi|145339360|ref|NP_190700.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122230198|sp|Q0WVU0.1|PP278_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g51320
gi|110741620|dbj|BAE98758.1| hypothetical protein [Arabidopsis thaliana]
gi|332645257|gb|AEE78778.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 530
Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 61/193 (31%), Positives = 102/193 (52%), Gaps = 21/193 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ A ++F + +D++SW +I++G + G V A + F +MP+++ + W MI YL
Sbjct: 169 LDLAKKLFVEIPKRDIVSWNSIIAGMVRNGDVLAAHKLFDEMPDKNIISWNIMISAYLGA 228
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVG 99
N +++LFREM + + +E T V +L T N+ + +
Sbjct: 229 NNPGVSISLFREMVRAGFQGNESTLVLLLNACGRSARLKEGRSVHASLIRTFLNSSVVID 288
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMY KC +V A+R+F + ++K TW MI+ + G + L++F M+ +R
Sbjct: 289 TALIDMYGKCKEVGLARRIFDSLSIRNKVTWNVMILAHCLHGRPEGGLELFEAMINGMLR 348
Query: 160 LDEVTYVGVLSAC 172
DEVT+VGVL C
Sbjct: 349 PDEVTFVGVLCGC 361
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 22/103 (21%), Positives = 48/103 (46%), Gaps = 31/103 (30%)
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISG------------------- 141
+L+ MY CG ++ A+++F ++ ++D +W ++I G+ +G
Sbjct: 158 SLMHMYTCCGALDLAKKLFVEIPKRDIVSWNSIIAGMVRNGDVLAAHKLFDEMPDKNIIS 217
Query: 142 ------------HGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+ ++ +F +M+RA + +E T V +L+AC
Sbjct: 218 WNIMISAYLGANNPGVSISLFREMVRAGFQGNESTLVLLLNAC 260
>gi|356527575|ref|XP_003532384.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61800-like [Glycine max]
Length = 577
Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 63/192 (32%), Positives = 96/192 (50%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F + DV+S+ ++ G + Q+ AR+ F +MP RD + W MI GY +
Sbjct: 163 AHKLFYECPHGDVVSYNALIHGLVKTRQISRARELFDEMPVRDEISWGTMIAGYSHLKLC 222
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
+A+ LF EM ++ D V +L+ D ++ L
Sbjct: 223 NQAIELFNEMMRLEVKPDNIALVSVLSACAQLGELEQGSIVHDYIKRNRIRVDSYLATGL 282
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+D+Y KCG VE A+ VF + K FTW AM+VG AI G G L+ FS+M+ ++ D
Sbjct: 283 VDLYAKCGCVETARDVFESCMEKYVFTWNAMLVGFAIHGEGSMVLEYFSRMVSEGVKPDG 342
Query: 163 VTYVGVLSACTH 174
VT +GVL C+H
Sbjct: 343 VTLLGVLVGCSH 354
>gi|242094040|ref|XP_002437510.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
gi|241915733|gb|EER88877.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
Length = 653
Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 67/196 (34%), Positives = 106/196 (54%), Gaps = 22/196 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A ++ M KDVISWT+IV+ Y + A + FA P +D V WTAM+ GY +
Sbjct: 198 VGAARKVLDEMVVKDVISWTSIVAAYSRSRDMGSAEEVFALCPVKDMVAWTAMVTGYAQN 257
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
+AL F +M + + DE + ++ ++ VG
Sbjct: 258 AMPVKALEAFEQMAGAGMPIDEVSLTGAISACAQLGAVRRAVWIQEIADRSGLGRNVVVG 317
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML-RASI 158
L+DMY KCG +++A RVF M K+ +T+++MIVGLA G + A+ +F+ M+ RA +
Sbjct: 318 SGLVDMYAKCGLIDEACRVFEGMQEKNVYTYSSMIVGLASHGRANDAIALFNDMVRRADV 377
Query: 159 RLDEVTYVGVLSACTH 174
+ VT++GVL+AC+H
Sbjct: 378 EPNHVTFIGVLTACSH 393
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 31/118 (26%)
Query: 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT------------------ 129
+L F+ FV +LI Y CGDV A++V +M+ KD +
Sbjct: 174 LLGGFDKHRFVENSLIGAYVACGDVGAARKVLDEMVVKDVISWTSIVAAYSRSRDMGSAE 233
Query: 130 -------------WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
WTAM+ G A + AL+ F QM A + +DEV+ G +SAC
Sbjct: 234 EVFALCPVKDMVAWTAMVTGYAQNAMPVKALEAFEQMAGAGMPIDEVSLTGAISACAQ 291
>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
Length = 706
Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 69/192 (35%), Positives = 99/192 (51%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F M V + ++ G+ RG VD A+ F +M ERD W+AMI Y +
Sbjct: 255 AAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFL 314
Query: 64 REALTLFREMQTSNIRRDEFTTVRILT---------------------TFNNDIFVGIAL 102
EAL+ FREM +R + + + ILT +F+ D+F AL
Sbjct: 315 MEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSAL 374
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I MY KCG+++KA+RVF KD W +MI G A G G+ AL +F M A + D
Sbjct: 375 ITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDG 434
Query: 163 VTYVGVLSACTH 174
+TY+G L+AC++
Sbjct: 435 ITYIGALTACSY 446
Score = 97.1 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 49/150 (32%), Positives = 83/150 (55%), Gaps = 18/150 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+ +F M ++ +S+T ++ G ++ G+V+ AR+ F +MP+RD V WTAM+ GY + R
Sbjct: 131 AIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRI 190
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
EA LF EM N + A+I Y + G+V A+++F M
Sbjct: 191 TEARALFDEMPKRN------------------VVSWTAMISGYAQNGEVNLARKLFEVMP 232
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+++ +WTAM+VG +GH + A ++F+ M
Sbjct: 233 ERNEVSWTAMLVGYIQAGHVEDAAELFNAM 262
Score = 93.2 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 54/169 (31%), Positives = 85/169 (50%), Gaps = 18/169 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M ++V+SWT ++SGY G+V++AR+ F MPER+ V WTAM+ GY++
Sbjct: 193 ARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHV 252
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+A LF M + N + VG + + G V+ A+ VF KM
Sbjct: 253 EDAAELFNAMPEHPV------------AACNAMMVG------FGQRGMVDAAKTVFEKMC 294
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+D TW+AMI + AL F +ML +R + + + +L+ C
Sbjct: 295 ERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVC 343
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 44/174 (25%), Positives = 83/174 (47%), Gaps = 24/174 (13%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGY-INRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVN 61
AL +F M ++D+ S+ ++SG + R + A A +P V +T+++ GY+R
Sbjct: 67 ALGLFRRMPSRDLASYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHG 126
Query: 62 RFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWK 121
+A+ LF++M N + + +G L+D G V +A+R+F +
Sbjct: 127 LLADAIRLFQQMPERN-------------HVSYTVLLG-GLLD----AGRVNEARRLFDE 168
Query: 122 MLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
M +D WTAM+ G +G A +F +M + ++ V++ ++S N
Sbjct: 169 MPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNV----VSWTAMISGYAQN 218
Score = 43.9 bits (102), Expect = 0.022, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 17/140 (12%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA-LTLFREMQTSN----------- 77
G ++ AR F MP R + A++ GY R NR +A L LFR M + +
Sbjct: 31 GNIEGARAAFEAMPLRTTASYNALLAGYFR-NRLPDAALGLFRRMPSRDLASYNALISGL 89
Query: 78 -IRRDEFTTVRILTT---FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
+RR F + +L+ Y + G + A R+F +M ++ ++T +
Sbjct: 90 SLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVL 149
Query: 134 IVGLAISGHGDTALDMFSQM 153
+ GL +G + A +F +M
Sbjct: 150 LGGLLDAGRVNEARRLFDEM 169
>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
Length = 655
Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 67/194 (34%), Positives = 102/194 (52%), Gaps = 22/194 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A EIF M KDV SWT++VS Y G ++ A + F ++P R+ V W+ M+ Y + N
Sbjct: 287 AKEIFDGMPIKDVYSWTSMVSAYAKCGDLENAGKLFKEIPNRNAVSWSCMVAAYSQANLP 346
Query: 64 REALTLFREMQTSNIRRDEFTTVRILT--------------------TFNNDIFVGI--A 101
EA+ +F +M + + + T V +L+ + ++ V + A
Sbjct: 347 EEAMRIFNDMIAAGVEPIDATLVSVLSACAQLGCLDVGRCLYDAYIVSHKVELTVNLSNA 406
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
IDM+ KCGDV A R+F M K+ +W MIV A+ G + AL +F + I D
Sbjct: 407 FIDMFAKCGDVGAASRLFRNMEDKNVVSWNTMIVAHALHGQSEEALHLFQKFKAIGIFPD 466
Query: 162 EVTYVGVLSACTHN 175
E+TY+GVLSAC+H+
Sbjct: 467 EITYIGVLSACSHS 480
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/193 (24%), Positives = 88/193 (45%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQM-------PERDYVLWTAMID- 55
A ++F M ++DV+SWTT+V GY G D A + F +M P ++ A
Sbjct: 185 ARKLFDEMADRDVVSWTTLVDGYARGGLPDEAWRVFCRMVVAGGGWPNEVTLVAAASAAG 244
Query: 56 --GYLRVNRFREALTLFREMQTS----NIRRDEFTTVRILTTFN--------NDIFVGIA 101
G L + R + ++ S N D F + + D++ +
Sbjct: 245 QIGLLGLGRMVHQCVVESGVRMSVNLENALVDMFGKCGCVASAKEIFDGMPIKDVYSWTS 304
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
++ Y KCGD+E A ++F ++ ++ +W+ M+ + + + A+ +F+ M+ A +
Sbjct: 305 MVSAYAKCGDLENAGKLFKEIPNRNAVSWSCMVAAYSQANLPEEAMRIFNDMIAAGVEPI 364
Query: 162 EVTYVGVLSACTH 174
+ T V VLSAC
Sbjct: 365 DATLVSVLSACAQ 377
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 22/146 (15%)
Query: 47 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFT---TVRILTT------------ 91
Y+L T M+ G+LR + AL LFR + + D T V+ TT
Sbjct: 98 YMLAT-MMRGFLRAGKPAHALALFRRVLRDRLPADARTIVFAVKAATTSSSPAEAIHCVA 156
Query: 92 -----FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTA 146
+ VG AL+ MY + A+++F +M +D +WT ++ G A G D A
Sbjct: 157 FKRGFIGQSVLVGNALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGGLPDEA 216
Query: 147 LDMFSQMLRASIRL-DEVTYVGVLSA 171
+F +M+ A +EVT V SA
Sbjct: 217 WRVFCRMVVAGGGWPNEVTLVAAASA 242
>gi|414864742|tpg|DAA43299.1| TPA: hypothetical protein ZEAMMB73_867482 [Zea mays]
Length = 501
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 102/204 (50%), Gaps = 35/204 (17%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F + +++SW ++ GY + AR+ FA+MP+RD V W+AMIDG ++ REA
Sbjct: 119 VFDEIPRPNLVSWNALLDGYAKCHDLPAARKVFARMPQRDVVSWSAMIDGCVKCGEHREA 178
Query: 67 LTLFREMQTSNIRRDE------------FTTVRILTT---------------------FN 93
L LF M+ + R E T V +L F
Sbjct: 179 LALFEMMENAAARSAEEEDGGGGARANDVTMVSVLGACAQLGDLERGRRAHRCLRERGFA 238
Query: 94 NDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK--DKFTWTAMIVGLAISGHGDTALDMFS 151
++ + +L+DMY KCG + +A VFW + + D W A+I GLA+ G ++++F
Sbjct: 239 LNLRLATSLVDMYAKCGAISEAMEVFWAVPVESTDVLIWNAVIGGLAVHGMATKSVEIFL 298
Query: 152 QMLRASIRLDEVTYVGVLSACTHN 175
+M RA + DE+TY+ +LSAC H
Sbjct: 299 EMQRAGVAPDEITYLCLLSACAHG 322
>gi|357153087|ref|XP_003576334.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Brachypodium distachyon]
Length = 531
Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 64/185 (34%), Positives = 97/185 (52%), Gaps = 24/185 (12%)
Query: 11 MKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 70
M + V W ++ + G ++ A + F +MP RD V W ++I GY ++ R+ +AL +F
Sbjct: 217 MPERSVSWWNAEITRHARVGDMEAAARVFREMPGRDAVSWNSLIGGYTKLGRYVQALEVF 276
Query: 71 REMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKC 109
REMQ S + E T V +L D +VG AL+DMY KC
Sbjct: 277 REMQDSGVEPTELTLVSVLGACAEIGELELGKGVHGYIGSKGVVADGYVGNALVDMYAKC 336
Query: 110 GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVL 169
G +E A+++F M +D W AMIVG ++ G+ AL++F M + D VT++GVL
Sbjct: 337 GSLELARQLFESMSTRDITCWNAMIVGFSVHGYSRKALELFDAM---RVEPDHVTFLGVL 393
Query: 170 SACTH 174
AC+H
Sbjct: 394 IACSH 398
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 18/151 (11%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
+VS Y G++ AR+ F MP R+ V W A++ + L REM
Sbjct: 166 LVSMYGKLGRLGDARKVFDGMPARNAVSWNALVAAHGATGDLHGVELLSREMPE------ 219
Query: 82 EFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISG 141
R ++ +N A I + + GD+E A RVF +M +D +W ++I G G
Sbjct: 220 -----RSVSWWN-------AEITRHARVGDMEAAARVFREMPGRDAVSWNSLIGGYTKLG 267
Query: 142 HGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
AL++F +M + + E+T V VL AC
Sbjct: 268 RYVQALEVFREMQDSGVEPTELTLVSVLGAC 298
Score = 42.7 bits (99), Expect = 0.060, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 64/153 (41%), Gaps = 15/153 (9%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVN 61
A ++F +M +D+ W ++ G+ G A + F M E D+V + ++
Sbjct: 341 LARQLFESMSTRDITCWNAMIVGFSVHGYSRKALELFDAMRVEPDHVTFLGVLIACSHGG 400
Query: 62 RFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWK 121
E FR M +++ V + + ++DM C+CG V +A ++
Sbjct: 401 LVDEGRVYFRSMT------EDYKIVPGVKHYG-------CMVDMLCRCGKVAEAYQMINH 447
Query: 122 M-LRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
M ++ + W ++ + GH D A F ++
Sbjct: 448 MPVKANCVLWKMVLAACRVHGHIDLANKAFHEL 480
>gi|297828249|ref|XP_002882007.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
lyrata]
gi|297327846|gb|EFH58266.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
lyrata]
Length = 606
Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 73/228 (32%), Positives = 112/228 (49%), Gaps = 53/228 (23%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ A ++F M KD+ISW +++ GY+ G+++ A+ F MP RD V MIDGY ++
Sbjct: 230 VNIASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTCATMIDGYAKL 289
Query: 61 NRFREALTLFREM--------------------------------QTSNIRRDEFTTVRI 88
+A TLF +M + S++ DE T V I
Sbjct: 290 GFVHQAKTLFDQMPLRDVVAYNSMMAGYVQNKCHMEALEIFNDMEKESHLSPDETTLVII 349
Query: 89 LTTF----------NNDIFV-----------GIALIDMYCKCGDVEKAQRVFWKMLRKDK 127
L+ + +++ G+ALIDMY KCG ++ A VF + K
Sbjct: 350 LSAIAQLGRLSKATDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSI 409
Query: 128 FTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
W AMI GLA+ G G++A +M Q+ R SI D++T+VGVL+AC+H+
Sbjct: 410 DHWNAMIGGLAVHGLGESAFNMLLQIERLSIIPDDITFVGVLNACSHS 457
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 58/206 (28%), Positives = 94/206 (45%), Gaps = 53/206 (25%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRG------------------------------ 30
+GFA ++F M +D +S+ ++++GY+ G
Sbjct: 165 LGFARQMFDRMPQRDSVSYNSMINGYVKCGLIESARELFDLMPREMKNLISWNSMISGYA 224
Query: 31 ----QVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTV 86
V+IA + FA+MPE+D + W +MIDGY++ R +A LF M RRD T
Sbjct: 225 QTSEGVNIASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMP----RRDVVTCA 280
Query: 87 RILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTA 146
+ID Y K G V +A+ +F +M +D + +M+ G + A
Sbjct: 281 --------------TMIDGYAKLGFVHQAKTLFDQMPLRDVVAYNSMMAGYVQNKCHMEA 326
Query: 147 LDMFSQMLRAS-IRLDEVTYVGVLSA 171
L++F+ M + S + DE T V +LSA
Sbjct: 327 LEIFNDMEKESHLSPDETTLVIILSA 352
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 56/183 (30%), Positives = 80/183 (43%), Gaps = 32/183 (17%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF---- 70
D+ ++ Y+ G + ARQ F +MP+RD V + +MI+GY++ A LF
Sbjct: 148 DLFLQNCLIGLYLKCGCLGFARQMFDRMPQRDSVSYNSMINGYVKCGLIESARELFDLMP 207
Query: 71 REM--------------QTS---NIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVE 113
REM QTS NI F + D+ ++ID Y K G +E
Sbjct: 208 REMKNLISWNSMISGYAQTSEGVNIASKLFAEMP-----EKDLISWNSMIDGYVKHGRIE 262
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM-LRASIRLDEVTYVGVLSAC 172
A+ +F M R+D T MI G A G A +F QM LR D V Y +++
Sbjct: 263 DAKGLFDVMPRRDVVTCATMIDGYAKLGFVHQAKTLFDQMPLR-----DVVAYNSMMAGY 317
Query: 173 THN 175
N
Sbjct: 318 VQN 320
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 21/131 (16%)
Query: 46 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL---------------- 89
D LW A+I + R+AL LF M + + D+F+ +L
Sbjct: 78 DPFLWNAVIKSHSHGKDPRQALLLFCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIH 137
Query: 90 -----TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGD 144
T +D+F+ LI +Y KCG + A+++F +M ++D ++ +MI G G +
Sbjct: 138 GFLRKTGLWSDLFLQNCLIGLYLKCGCLGFARQMFDRMPQRDSVSYNSMINGYVKCGLIE 197
Query: 145 TALDMFSQMLR 155
+A ++F M R
Sbjct: 198 SARELFDLMPR 208
>gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 629
Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 66/197 (33%), Positives = 103/197 (52%), Gaps = 23/197 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYL 58
M A E+F M ++ +SW+T+V GY G +++AR F +MP ++ V WT +I GY
Sbjct: 232 MSRAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPFPAKNVVTWTIIIAGYA 291
Query: 59 RVNRFREALTLFREMQTSNIRRDEFT---------------------TVRILTTFNNDIF 97
+EA L +M S +R D ++ + N++
Sbjct: 292 EKGLLKEADKLVDQMVASGLRFDAAAAISILAACAESGLLSLGMRAHSIIKKSNLNSNAS 351
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
V AL+DMY KCG ++KA VF M +KD +W M+ GL + GHG A+++FS+M +
Sbjct: 352 VLNALLDMYAKCGSLKKAFDVFNDMPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRKEG 411
Query: 158 IRLDEVTYVGVLSACTH 174
I D+VT++ VL +C H
Sbjct: 412 IWPDKVTFIAVLCSCNH 428
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 51/160 (31%), Positives = 79/160 (49%), Gaps = 20/160 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+++F M +D +SW +++ G + G++ AR+ F +MP+RD + W M+DGY R
Sbjct: 173 AMKLFEKMSERDTVSWNSMLGGLVKAGELRDARKLFDEMPQRDLISWNTMLDGYARCREM 232
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM- 122
A LF +M N TV T ++ Y K GD+E A+ +F KM
Sbjct: 233 SRAFELFEKMPERN-------TVSWST-----------MVMGYSKAGDMEMARVMFDKMP 274
Query: 123 -LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
K+ TWT +I G A G A + QM+ + +R D
Sbjct: 275 FPAKNVVTWTIIIAGYAEKGLLKEADKLVDQMVASGLRFD 314
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 23/146 (15%)
Query: 31 QVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT 90
Q ++A + F Q+ E + L ++I + ++ +A +F EMQ + D FT +L
Sbjct: 66 QTNLALRVFNQVQEPNVHLCNSLIRAHALNSQPYQAFFVFSEMQRFGLFADNFTYPFLLK 125
Query: 91 T---------------------FNNDIFVGIALIDMYCKCG--DVEKAQRVFWKMLRKDK 127
++DI+V ALID Y +CG V A ++F KM +D
Sbjct: 126 ACSGLSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDT 185
Query: 128 FTWTAMIVGLAISGHGDTALDMFSQM 153
+W +M+ GL +G A +F +M
Sbjct: 186 VSWNSMLGGLVKAGELRDARKLFDEM 211
>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
pumila]
Length = 710
Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 62/192 (32%), Positives = 103/192 (53%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++ ++DV+S+T +++GY +RG ++ A + F ++P +D V W A I GY +
Sbjct: 157 AQKVXDKSSHRDVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNY 216
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
+EAL LF++M +N+R DE T V +L+ F ++ + AL
Sbjct: 217 KEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNAL 276
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
ID+Y KCG++E A +F + KD +W +I G AL +F MLR+ + ++
Sbjct: 277 IDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPND 336
Query: 163 VTYVGVLSACTH 174
VT + +LSAC H
Sbjct: 337 VTMLSILSACAH 348
Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats.
Identities = 59/177 (33%), Positives = 95/177 (53%), Gaps = 23/177 (12%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
++ Y G+++ A F + +D + W +I GY +N ++EAL LF++M S + +
Sbjct: 276 LIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPN 335
Query: 82 EFTTVRILTT-----------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
+ T + IL+ N + +LIDMY KCGD+E AQ+V
Sbjct: 336 DVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQV 395
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
F ML + +W AMI G A+ G + A D+FS+M + I D++T+VG+LSAC+H+
Sbjct: 396 FDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHS 452
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 49/83 (59%)
Query: 93 NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
+ D+ ALI Y G +E A ++F ++ KD +W A I G A +G+ AL++F +
Sbjct: 166 HRDVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKK 225
Query: 153 MLRASIRLDEVTYVGVLSACTHN 175
M++ ++R DE T V VLSAC +
Sbjct: 226 MMKTNVRPDESTMVTVLSACAQS 248
>gi|242081563|ref|XP_002445550.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
gi|241941900|gb|EES15045.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
Length = 595
Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 68/185 (36%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
+D + T++++ Y NRG D AR+ F +MP RD V W +I R R ++AL LF EM
Sbjct: 152 RDALLATSLMACYANRGDGDGARKLFGEMPARDAVAWNVLISCCARNRRTKDALKLFEEM 211
Query: 74 Q--TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCG 110
+ S D+ T + +L + + V +LI MY +CG
Sbjct: 212 RGRDSGAEPDDVTCILLLQACTSLGALDFGEQVWAYAEEHGYGAKLKVRNSLIAMYSRCG 271
Query: 111 DVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLS 170
V+KA RVF +K TW+AMI GLA +G GD A+ F +M+R+ + DE T+ GVLS
Sbjct: 272 CVDKAYRVFCGTPQKSVVTWSAMISGLAANGFGDDAISAFEEMIRSDVAPDEQTFTGVLS 331
Query: 171 ACTHN 175
AC+H+
Sbjct: 332 ACSHS 336
>gi|224066769|ref|XP_002302206.1| predicted protein [Populus trichocarpa]
gi|222843932|gb|EEE81479.1| predicted protein [Populus trichocarpa]
Length = 681
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 103/192 (53%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F +K D I ++++ Y N G+++ A+Q F MP + + W +MI G +
Sbjct: 358 ACKLFSELKTYDTILLNSMITVYSNSGKIEDAKQIFNTMPSKSLISWNSMIVGLSQNGCP 417
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
EAL LF M ++R + F +++ ++D + +L
Sbjct: 418 VEALDLFCMMNKLDLRMNRFNLTSVISACASISSLELGEQIFARATVVGLDSDEVISTSL 477
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+D YCKCG +E +++F M++ D+ +W +M++G A +GHG AL +F++M A +R E
Sbjct: 478 VDFYCKCGFIEIGRKLFDTMMKSDEISWNSMLMGYATNGHGLEALTLFNEMRHAGVRPTE 537
Query: 163 VTYVGVLSACTH 174
+T+ GVLSAC H
Sbjct: 538 ITFTGVLSACDH 549
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 99/225 (44%), Gaps = 55/225 (24%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
++ +F M NK+ SW + SG+ G+++IAR+ F +MP R+ V+W +MI Y R
Sbjct: 91 SIRLFDMMSNKNDYSWNVVFSGFAKAGEMEIARRLFNEMPNRNGVVWNSMIHSYARNGSP 150
Query: 64 REALTLFREMQTSNIRR---DEFTTVRILTTFNN---------------------DIFVG 99
REA+ LF+E+ + + D F ++ + D +
Sbjct: 151 REAVRLFKELNLDPLDKSCCDTFVLATVIGACTDLGEIQCGKQIHARILIDNMELDSVLT 210
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLA--------------------- 138
+LI++Y KCGD++ A V M D F+ +A+I G A
Sbjct: 211 SSLINLYGKCGDLDSAHCVLNTMEEPDDFSLSALITGYANHGRMNDARRAFYRKSNSCVV 270
Query: 139 -----ISGHGDT-----ALDMFSQMLRASIRLDEVTYVGVLSACT 173
ISG+ A +F+ M + +++D T +LSAC+
Sbjct: 271 VWNSLISGYVTNNEEIEAFLLFNDMQKKGLKVDFSTLATILSACS 315
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 92/219 (42%), Gaps = 52/219 (23%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+ M+ D S + +++GY N G+++ AR+ F + V+W ++I GY+ N EA
Sbjct: 229 VLNTMEEPDDFSLSALITGYANHGRMNDARRAFYRKSNSCVVVWNSLISGYVTNNEEIEA 288
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDM 105
LF +MQ ++ D T IL+ ++ D V A ID
Sbjct: 289 FLLFNDMQKKGLKVDFSTLATILSACSSLCNSQHGKQMHAYACKVGLICDNVVASAFIDA 348
Query: 106 YCKCGD-------------------------------VEKAQRVFWKMLRKDKFTWTAMI 134
Y KCG +E A+++F M K +W +MI
Sbjct: 349 YSKCGSLNDACKLFSELKTYDTILLNSMITVYSNSGKIEDAKQIFNTMPSKSLISWNSMI 408
Query: 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
VGL+ +G ALD+F M + +R++ V+SAC
Sbjct: 409 VGLSQNGCPVEALDLFCMMNKLDLRMNRFNLTSVISACA 447
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 21/151 (13%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT 85
Y G + A + F +MP R+ W MI+GY++ ++ LF M N +++
Sbjct: 51 YTRCGSMTDAHKLFDEMPHRNCFSWNTMIEGYMKSGNKERSIRLFDMMSNKN----DYSW 106
Query: 86 VRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDT 145
N +F G A K G++E A+R+F +M ++ W +MI A +G
Sbjct: 107 --------NVVFSGFA------KAGEMEIARRLFNEMPNRNGVVWNSMIHSYARNGSPRE 152
Query: 146 ALDMFSQMLRASIR---LDEVTYVGVLSACT 173
A+ +F ++ + D V+ ACT
Sbjct: 153 AVRLFKELNLDPLDKSCCDTFVLATVIGACT 183
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
L+ MY +CG + A ++F +M ++ F+W MI G SG+ + ++ +F M
Sbjct: 47 LLQMYTRCGSMTDAHKLFDEMPHRNCFSWNTMIEGYMKSGNKERSIRLFDMM 98
>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Cucumis sativus]
Length = 667
Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 62/192 (32%), Positives = 102/192 (53%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E++ N+ K V+ T +++GY+ G+V++A + F +M ++ V W +MI GY+ R
Sbjct: 217 AEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRA 276
Query: 64 REALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIAL 102
+ L +F+ M S +R + + +L + + D +L
Sbjct: 277 EDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSL 336
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I MYCKCGD++ A ++F +M RKD TW AMI G A G G AL +F +M +++ D
Sbjct: 337 ISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDW 396
Query: 163 VTYVGVLSACTH 174
+T+V V+ AC H
Sbjct: 397 ITFVAVILACNH 408
Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 18/171 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
AL F M KD+ SW T++SG+ GQ+ A F+ MPE++ V W+AMI GY+
Sbjct: 155 ALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDL 214
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
A L++ + + + V A++ Y K G VE A+R+F +M
Sbjct: 215 EAAEELYKNVGMKS------------------VVVETAMLTGYMKFGKVELAERIFQRMA 256
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
K+ TW +MI G + + L +F M+ + +R + ++ VL C++
Sbjct: 257 VKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSN 307
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 51/90 (56%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+KD + T+++S Y G +D A + F +MP +D + W AMI GY + R+AL LF +
Sbjct: 327 SKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDK 386
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIAL 102
M+ ++ D T V ++ N+ FV + +
Sbjct: 387 MRNGTMKPDWITFVAVILACNHAGFVDLGV 416
Score = 39.3 bits (90), Expect = 0.63, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 41/110 (37%), Gaps = 40/110 (36%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQ-------------------------------- 31
A ++F M KDVI+W ++SGY G
Sbjct: 349 AWKLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNH 408
Query: 32 ---VDIARQYFAQMP-----ERDYVLWTAMIDGYLRVNRFREALTLFREM 73
VD+ QYF M E V +T +ID R R EA++L +EM
Sbjct: 409 AGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEM 458
>gi|125525262|gb|EAY73376.1| hypothetical protein OsI_01257 [Oryza sativa Indica Group]
Length = 499
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 97/181 (53%), Gaps = 21/181 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV+SW ++ GY+ G + AR+ F MP R+ V WT +I Y ++ + EA+ +FR MQ
Sbjct: 137 DVVSWNVMIDGYVKSGDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQ 196
Query: 75 TSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVE 113
I D + +L+ + +I + A+IDMY KCG V+
Sbjct: 197 VEGIEPDGVALLSVLSACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVK 256
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
KA VF M +K TWT MI G A+ G G A+++F +M + ++ +++T++ VLS C+
Sbjct: 257 KALEVFEGMEQKSIVTWTTMIAGFALHGLGSEAVELFRRMEKENVSPNDITFLAVLSVCS 316
Query: 174 H 174
H
Sbjct: 317 H 317
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 32/110 (29%)
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVF-----------WK---------------------M 122
D +L+ YC CG V A+RVF W M
Sbjct: 105 DPHASASLVQAYCSCGSVASARRVFDETAAYADVVSWNVMIDGYVKSGDLARARELFDVM 164
Query: 123 LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
++ +WT +I A + A+++F +M I D V + VLSAC
Sbjct: 165 PGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVLSAC 214
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 67/145 (46%), Gaps = 12/145 (8%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
ALE+F M+ K +++WTT+++G+ G A + F +M E++ V + F
Sbjct: 258 ALEVFEGMEQKSIVTWTTMIAGFALHGLGSEAVELFRRM-EKENVSPNDIT--------F 308
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM- 122
L++ + +++ R F T+ + +ID+ + G + +A+ + M
Sbjct: 309 LAVLSVCSHVGLTDLGRWYFKTMVSQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMP 368
Query: 123 LRKDKFTWTAMIVGLAISGHGDTAL 147
+ + W A++ A HGDT L
Sbjct: 369 FKANAAIWGALLA--AARTHGDTEL 391
>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 613
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 105/197 (53%), Gaps = 23/197 (11%)
Query: 1 MGFALEIFGNMKNK-DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR 59
M A E F N K D + WT +VSGY++ G V A +YF MP R+ V W A++ GY++
Sbjct: 158 MSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVK 217
Query: 60 VNRFREALTLFREM-QTSNIRRDEFTTVRILTTFNN---------------------DIF 97
+ +AL LFR M + +N++ + T +L +N ++
Sbjct: 218 NSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLT 277
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
VG +L+ MYCKCGD+ A ++F +M +D W AMI G A G G A+++F +M
Sbjct: 278 VGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEG 337
Query: 158 IRLDEVTYVGVLSACTH 174
+ + +T+V VL+AC H
Sbjct: 338 VEPNWITFVAVLTACIH 354
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 22/118 (18%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T++VS Y G + A + F +M RD V W AMI GY + +EA+ LF M+ +
Sbjct: 280 TSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVE 339
Query: 80 RDEFTTVRILTT--------FNNDIFVGI--------------ALIDMYCKCGDVEKA 115
+ T V +LT F F G+ ++D+ C+ G +E+A
Sbjct: 340 PNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERA 397
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 19/135 (14%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR-VNRFREALTLFREMQTSNI 78
T V+ + RG + A + FA P + + ++ GY R + R +A LF + T +
Sbjct: 21 TVAVAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPTPDA 80
Query: 79 RRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLA 138
++N L+ + GD + A+R+F M +D +W M+ GL+
Sbjct: 81 -----------VSYNT-------LLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLS 122
Query: 139 ISGHGDTALDMFSQM 153
SG + A +F M
Sbjct: 123 KSGAVEEAKAVFLAM 137
>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 679
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 103/183 (56%), Gaps = 21/183 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ DV +++V Y +++ + + F+ + RD + W +++ GY++ R+ EAL LFR+
Sbjct: 238 DSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQ 297
Query: 73 MQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGD 111
M ++ +R ++ F +IF+ AL+DMY KCG+
Sbjct: 298 MVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGN 357
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
++ A+++F +M D+ +WTA+I+G A+ GHG A+ +F +M R ++ ++V +V VL+A
Sbjct: 358 IQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTA 417
Query: 172 CTH 174
C+H
Sbjct: 418 CSH 420
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 93/181 (51%), Gaps = 21/181 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ + +++ Y +D R+ F MP +D V + +I GY + + +AL + REM
Sbjct: 139 DLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMG 198
Query: 75 TSNIRRDEFTTVRILTTF---------------------NNDIFVGIALIDMYCKCGDVE 113
TS+++ D FT +L F ++D+++G +L+DMY K +E
Sbjct: 199 TSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIE 258
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
++RVF + R+D +W +++ G +G + AL +F QM+ A +R V + V+ AC
Sbjct: 259 DSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACA 318
Query: 174 H 174
H
Sbjct: 319 H 319
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 21/174 (12%)
Query: 18 SWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 77
S + ++S Y N + A F + + W ++I + + F AL F EM+ S
Sbjct: 41 SASIVISIYTNLKLLHEALLVFKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRASG 100
Query: 78 IRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQ 116
D +L + + D++ G AL++MY K ++ +
Sbjct: 101 RCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVR 160
Query: 117 RVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLS 170
+VF M RKD ++ +I G A SG + AL M +M + ++ D T VL
Sbjct: 161 KVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLP 214
>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
Length = 485
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 97/176 (55%), Gaps = 21/176 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
I+ Y ++ A++ F ++ E+D + WT+M+ G + F+E+L LFR+MQ I
Sbjct: 50 NAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIE 109
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
DE T V +L+ N D+ + AL+DMY KCG ++ A +V
Sbjct: 110 PDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQV 169
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
F +M ++ FTW AMI GLA+ GHG+ A+ +F QM + D+VT++ +L AC+H
Sbjct: 170 FRRMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSH 225
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 63/118 (53%), Gaps = 21/118 (17%)
Query: 77 NIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKA 115
N+R DE T V ++ + ++ V A++DMYCKC D+E A
Sbjct: 6 NLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESA 65
Query: 116 QRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
Q VF ++ KD +WT+M+ GLA SG+ +L +F +M I DE+T VGVLSAC
Sbjct: 66 QEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACA 123
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 23/157 (14%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
N D++ T +V Y G +D+A Q F +M R+ W AMI G +A++LF +
Sbjct: 144 NCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQ 203
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFV--GIAL--------------------IDMYCKCG 110
M+ + D+ T + +L ++ V G+A+ +D+ C+
Sbjct: 204 MEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRAR 263
Query: 111 DVEKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTA 146
V+ A M ++ + W ++ GH D A
Sbjct: 264 KVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLA 300
>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
Length = 568
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 106/205 (51%), Gaps = 34/205 (16%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDG------- 56
A ++F M KDV++ T ++ G + G++ AR+ F +MP+R+ V WT+MI G
Sbjct: 106 ARQLFDMMPVKDVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTW 165
Query: 57 ------YLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT------------------- 91
Y R EAL LF MQ +R + + +L+
Sbjct: 166 STMIKIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVR 225
Query: 92 --FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDM 149
F+ DI+V LI MY KCGD+ A+RVF + KD W ++I G A G G+ AL++
Sbjct: 226 SQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEV 285
Query: 150 FSQMLRASIRLDEVTYVGVLSACTH 174
F M +SI DE+T++GVLSAC++
Sbjct: 286 FHDMFSSSIAPDEITFIGVLSACSY 310
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 90/196 (45%), Gaps = 28/196 (14%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M + ISW +VSGY+ G + AR+ F +MPER+ V WTAMI GY++
Sbjct: 13 ARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLI 72
Query: 64 REALTLFREMQTSNI--------------RRDEFTTVRILTTFNNDIFVGIALIDMYCKC 109
EA LF M N+ R DE + + D+ +ID C
Sbjct: 73 EEAELLFWRMPERNVVSWTVMLGGLIEDGRVDEARQLFDMMPV-KDVVASTNMIDGLCSE 131
Query: 110 GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDT-------------ALDMFSQMLRA 156
G + +A+ +F +M +++ WT+MI G G T AL +FS M R
Sbjct: 132 GRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQRE 191
Query: 157 SIRLDEVTYVGVLSAC 172
+R + + VLS C
Sbjct: 192 GVRPSFPSVISVLSVC 207
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 18/131 (13%)
Query: 23 VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDE 82
++GY + AR+ F +MPE + + W ++ GY++ EA +F +M N
Sbjct: 1 MAGYFQNKRPREARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERN----- 55
Query: 83 FTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGH 142
+ A+I Y + G +E+A+ +FW+M ++ +WT M+ GL G
Sbjct: 56 -------------VVSWTAMIRGYVQEGLIEEAELLFWRMPERNVVSWTVMLGGLIEDGR 102
Query: 143 GDTALDMFSQM 153
D A +F M
Sbjct: 103 VDEARQLFDMM 113
>gi|222625627|gb|EEE59759.1| hypothetical protein OsJ_12247 [Oryza sativa Japonica Group]
Length = 950
Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 61/190 (32%), Positives = 101/190 (53%), Gaps = 21/190 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
IF ++ K+++ W +++SGY N ++ A + F +MP R+ W ++I GY + +F +A
Sbjct: 435 IFYSLPQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDA 494
Query: 67 LTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDM 105
L F M S E T +L IFVG AL DM
Sbjct: 495 LKSFHAMLASGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDM 554
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y K GD++ ++RVF++M +++ WTAMI GLA +G + ++ +F M+ A I +E T+
Sbjct: 555 YAKSGDLDSSKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTF 614
Query: 166 VGVLSACTHN 175
+ +L AC+H+
Sbjct: 615 LAILFACSHS 624
Score = 85.9 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 58/221 (26%), Positives = 98/221 (44%), Gaps = 52/221 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M+ +DV+SWT ++ Y G ++ AR+ +MPER+ V W ++ + +
Sbjct: 300 ARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNA 359
Query: 64 REALTLFREMQTSNIRRDE--FTTV-------------------RILTTFNNDIFVGIAL 102
+EA++L+ +M R + F++V + +N++FV AL
Sbjct: 360 KEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSAL 419
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLA------------------------ 138
IDMYCKC + AQ +F+ + +K+ W ++I G +
Sbjct: 420 IDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWN 479
Query: 139 --ISGHGDT-----ALDMFSQMLRASIRLDEVTYVGVLSAC 172
ISG+ AL F ML + E+T+ VL AC
Sbjct: 480 SIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLAC 520
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 53/222 (23%), Positives = 94/222 (42%), Gaps = 53/222 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M + V+S+TT+V + RG V A + + Q P +TAMI G++
Sbjct: 167 ARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELP 226
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT----------------------FNNDIFVGIA 101
++AL +F EM + + +E T V ++ + ++ V +
Sbjct: 227 KDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNLLDKNLGVRNS 286
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI--------------------------V 135
LI +Y + GD + A+R+F +M +D +WTA++
Sbjct: 287 LITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMPERNEVSW 346
Query: 136 GLAIS-----GHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
G ++ G+ A+ ++SQML R + + VL AC
Sbjct: 347 GTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGAC 388
>gi|218193589|gb|EEC76016.1| hypothetical protein OsI_13171 [Oryza sativa Indica Group]
Length = 950
Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 61/190 (32%), Positives = 101/190 (53%), Gaps = 21/190 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
IF ++ K+++ W +++SGY N ++ A + F +MP R+ W ++I GY + +F +A
Sbjct: 435 IFYSLPQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDA 494
Query: 67 LTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDM 105
L F M S E T +L IFVG AL DM
Sbjct: 495 LKSFHAMLASGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDM 554
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y K GD++ ++RVF++M +++ WTAMI GLA +G + ++ +F M+ A I +E T+
Sbjct: 555 YAKSGDLDSSKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTF 614
Query: 166 VGVLSACTHN 175
+ +L AC+H+
Sbjct: 615 LAILFACSHS 624
Score = 85.9 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 58/221 (26%), Positives = 98/221 (44%), Gaps = 52/221 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M+ +DV+SWT ++ Y G ++ AR+ +MPER+ V W ++ + +
Sbjct: 300 ARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNA 359
Query: 64 REALTLFREMQTSNIRRDE--FTTV-------------------RILTTFNNDIFVGIAL 102
+EA++L+ +M R + F++V + +N++FV AL
Sbjct: 360 KEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSAL 419
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLA------------------------ 138
IDMYCKC + AQ +F+ + +K+ W ++I G +
Sbjct: 420 IDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWN 479
Query: 139 --ISGHGDT-----ALDMFSQMLRASIRLDEVTYVGVLSAC 172
ISG+ AL F ML + E+T+ VL AC
Sbjct: 480 SIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLAC 520
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 53/222 (23%), Positives = 94/222 (42%), Gaps = 53/222 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M + V+S+TT+V + RG V A + + Q P +TAMI G++
Sbjct: 167 ARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELP 226
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT----------------------FNNDIFVGIA 101
++AL +F EM + + +E T V ++ + ++ V +
Sbjct: 227 KDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNLLDKNLGVRNS 286
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI--------------------------V 135
LI +Y + GD + A+R+F +M +D +WTA++
Sbjct: 287 LITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMPERNEVSW 346
Query: 136 GLAIS-----GHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
G ++ G+ A+ ++SQML R + + VL AC
Sbjct: 347 GTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGAC 388
>gi|108710611|gb|ABF98406.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 787
Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 61/190 (32%), Positives = 101/190 (53%), Gaps = 21/190 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
IF ++ K+++ W +++SGY N ++ A + F +MP R+ W ++I GY + +F +A
Sbjct: 435 IFYSLPQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDA 494
Query: 67 LTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDM 105
L F M S E T +L IFVG AL DM
Sbjct: 495 LKSFHAMLASGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDM 554
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y K GD++ ++RVF++M +++ WTAMI GLA +G + ++ +F M+ A I +E T+
Sbjct: 555 YAKSGDLDSSKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTF 614
Query: 166 VGVLSACTHN 175
+ +L AC+H+
Sbjct: 615 LAILFACSHS 624
Score = 85.9 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 58/221 (26%), Positives = 98/221 (44%), Gaps = 52/221 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M+ +DV+SWT ++ Y G ++ AR+ +MPER+ V W ++ + +
Sbjct: 300 ARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNA 359
Query: 64 REALTLFREMQTSNIRRDE--FTTV-------------------RILTTFNNDIFVGIAL 102
+EA++L+ +M R + F++V + +N++FV AL
Sbjct: 360 KEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSAL 419
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLA------------------------ 138
IDMYCKC + AQ +F+ + +K+ W ++I G +
Sbjct: 420 IDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWN 479
Query: 139 --ISGHGDT-----ALDMFSQMLRASIRLDEVTYVGVLSAC 172
ISG+ AL F ML + E+T+ VL AC
Sbjct: 480 SIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLAC 520
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 53/222 (23%), Positives = 94/222 (42%), Gaps = 53/222 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M + V+S+TT+V + RG V A + + Q P +TAMI G++
Sbjct: 167 ARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELP 226
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT----------------------FNNDIFVGIA 101
++AL +F EM + + +E T V ++ + ++ V +
Sbjct: 227 KDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNLLDKNLGVRNS 286
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI--------------------------V 135
LI +Y + GD + A+R+F +M +D +WTA++
Sbjct: 287 LITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMPERNEVSW 346
Query: 136 GLAIS-----GHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
G ++ G+ A+ ++SQML R + + VL AC
Sbjct: 347 GTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGAC 388
>gi|62733531|gb|AAX95648.1| Tetratricopeptide repeat, putative [Oryza sativa Japonica Group]
Length = 888
Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 61/190 (32%), Positives = 101/190 (53%), Gaps = 21/190 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
IF ++ K+++ W +++SGY N ++ A + F +MP R+ W ++I GY + +F +A
Sbjct: 435 IFYSLPQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDA 494
Query: 67 LTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDM 105
L F M S E T +L IFVG AL DM
Sbjct: 495 LKSFHAMLASGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDM 554
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y K GD++ ++RVF++M +++ WTAMI GLA +G + ++ +F M+ A I +E T+
Sbjct: 555 YAKSGDLDSSKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTF 614
Query: 166 VGVLSACTHN 175
+ +L AC+H+
Sbjct: 615 LAILFACSHS 624
Score = 85.9 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 58/221 (26%), Positives = 98/221 (44%), Gaps = 52/221 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M+ +DV+SWT ++ Y G ++ AR+ +MPER+ V W ++ + +
Sbjct: 300 ARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNA 359
Query: 64 REALTLFREMQTSNIRRDE--FTTV-------------------RILTTFNNDIFVGIAL 102
+EA++L+ +M R + F++V + +N++FV AL
Sbjct: 360 KEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSAL 419
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLA------------------------ 138
IDMYCKC + AQ +F+ + +K+ W ++I G +
Sbjct: 420 IDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWN 479
Query: 139 --ISGHGDT-----ALDMFSQMLRASIRLDEVTYVGVLSAC 172
ISG+ AL F ML + E+T+ VL AC
Sbjct: 480 SIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLAC 520
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 53/222 (23%), Positives = 94/222 (42%), Gaps = 53/222 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M + V+S+TT+V + RG V A + + Q P +TAMI G++
Sbjct: 167 ARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELP 226
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT----------------------FNNDIFVGIA 101
++AL +F EM + + +E T V ++ + ++ V +
Sbjct: 227 KDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNLLDKNLGVRNS 286
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI--------------------------V 135
LI +Y + GD + A+R+F +M +D +WTA++
Sbjct: 287 LITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMPERNEVSW 346
Query: 136 GLAIS-----GHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
G ++ G+ A+ ++SQML R + + VL AC
Sbjct: 347 GTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGAC 388
>gi|356533546|ref|XP_003535324.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Glycine max]
Length = 483
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 98/196 (50%), Gaps = 22/196 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
MG A ++F M++ DV+ W ++ G+ G ++ + F QM ER V W M+ +
Sbjct: 157 MGDASKVFDEMRDPDVVVWNLMIRGFCKMGDLETGMKVFGQMKERTVVSWNLMMSCLAKN 216
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT----------------------FNNDIFV 98
N+ +AL LF EM D+ + V +L + I V
Sbjct: 217 NKEEKALELFNEMLEQGFEPDDASLVTVLPVCARLGAVDIGEWIHSYANSKGFLQDTINV 276
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
G +L+D YCKCG+++ A +F M K+ +W AMI GLA +G G+ +++F +M+
Sbjct: 277 GNSLVDFYCKCGNLQAAWSIFNDMASKNVVSWNAMISGLAYNGEGEVGVNLFEEMVHGGF 336
Query: 159 RLDEVTYVGVLSACTH 174
++ T+VGVL+ C H
Sbjct: 337 EPNDSTFVGVLACCAH 352
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 72/195 (36%), Gaps = 52/195 (26%)
Query: 31 QVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT 90
+V A + FA + +L+ A+I + F + + F M+T I DE+T +
Sbjct: 55 RVPYATRLFAHTHNPNILLFNAIIKAHSLHPPFHASFSFFSLMKTRAISPDEYTLAPLFK 114
Query: 91 T---------------------FNNDIFVGIALIDMY----------------------- 106
+ F V +A +++Y
Sbjct: 115 SASNLRYYVLGGCVHAHVVRLGFTRHASVRVAALEVYASCERMGDASKVFDEMRDPDVVV 174
Query: 107 --------CKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
CK GD+E +VF +M + +W M+ LA + + AL++F++ML
Sbjct: 175 WNLMIRGFCKMGDLETGMKVFGQMKERTVVSWNLMMSCLAKNNKEEKALELFNEMLEQGF 234
Query: 159 RLDEVTYVGVLSACT 173
D+ + V VL C
Sbjct: 235 EPDDASLVTVLPVCA 249
>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g66520-like [Glycine max]
Length = 622
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 110/196 (56%), Gaps = 22/196 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G + ++F ++D+ SW T+++ Y+ G + +A++ F M ERD V W+ +I GY++V
Sbjct: 166 VGESQKVFQWAVDRDLYSWNTLIAAYVGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQV 225
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDI----------FVG----------- 99
F EAL F +M + +E+T V L +N + ++G
Sbjct: 226 GCFMEALDFFHKMLQIGPKPNEYTLVSALAACSNLVALDQGKWIHAYIGKGEIKMNERLL 285
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDK-FTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
++IDMY KCG++E A RVF++ K K + W AMI G A+ G + A+++F QM I
Sbjct: 286 ASIIDMYAKCGEIESASRVFFEHKVKQKVWLWNAMIGGFAMHGMPNEAINVFEQMKVEKI 345
Query: 159 RLDEVTYVGVLSACTH 174
++VT++ +L+AC+H
Sbjct: 346 SPNKVTFIALLNACSH 361
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 75/193 (38%), Gaps = 54/193 (27%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGY-LRVNRFREALTLFREMQT------------------ 75
A + F Q+P+ D ++ MI + L + +L +FR +
Sbjct: 66 AHKLFDQIPQPDLFIYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSAC 125
Query: 76 -SNIRRDEFTTVRILTT---FNNDIFVGIALIDMYCKCGDVEKAQRVF----------WK 121
+ + E VRI N++FV ALI MY K G V ++Q+VF W
Sbjct: 126 GNGLGVQEGEQVRIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLYSWN 185
Query: 122 ML---------------------RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
L +D +W+ +I G G ALD F +ML+ +
Sbjct: 186 TLIAAYVGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKP 245
Query: 161 DEVTYVGVLSACT 173
+E T V L+AC+
Sbjct: 246 NEYTLVSALAACS 258
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 68/160 (42%), Gaps = 25/160 (15%)
Query: 20 TTIVSGYINRGQVDIA-RQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 78
+I+ Y G+++ A R +F ++ LW AMI G+ EA+ +F +M+ I
Sbjct: 286 ASIIDMYAKCGEIESASRVFFEHKVKQKVWLWNAMIGGFAMHGMPNEAINVFEQMKVEKI 345
Query: 79 RRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT------WTA 132
++ T + +L C G + + +++++++ D +
Sbjct: 346 SPNKVTFIALLNA---------------CSHGYMVEEGKLYFRLMVSDYAITPEIEHYGC 390
Query: 133 MIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
M+ L+ SG A DM S M A D + +L+AC
Sbjct: 391 MVDLLSRSGLLKEAEDMISSMPMAP---DVAIWGALLNAC 427
>gi|357463685|ref|XP_003602124.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491172|gb|AES72375.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 69/213 (32%), Positives = 99/213 (46%), Gaps = 52/213 (24%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFR-- 71
KDV+ WT +V GY +G+++ AR+ F MPER+Y +W++M+ GY + EA +FR
Sbjct: 179 KDVVIWTVMVDGYAKKGEMEDAREVFELMPERNYFVWSSMVCGYCKKGDVMEAEAIFRRI 238
Query: 72 -----------------------------EMQTSNIRRDEFTTVRILTTFNN-------- 94
EM DEFT V +L+
Sbjct: 239 PVRNLEIWNSMIAGYVQNGCGEKALEAFGEMGVDGFEPDEFTVVSVLSACAQLGDLDAGK 298
Query: 95 -------------DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISG 141
+ FV LIDMY KCGD+ A+ VF ++ F W AMI G A++G
Sbjct: 299 QMHHMIECKGIAVNQFVLSGLIDMYAKCGDLVNARLVFESCNERNVFCWNAMIAGFAVNG 358
Query: 142 HGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+ L+ +M ++IRLD VT++ VLSAC H
Sbjct: 359 QCNEVLEYLDRMQESNIRLDAVTFITVLSACAH 391
Score = 82.8 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 15/186 (8%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M ++V++W ++ GY+ G A F +MP + V W+ MI G+ R
Sbjct: 105 ARKVFDLMPERNVVTWNAMIGGYLRNGDAKSALLAFEEMPGKTRVSWSQMIGGFARNGDT 164
Query: 64 REALTLFRE-------------MQTSNIRRDEFTTVRILTTF--NNDIFVGIALIDMYCK 108
A F + M ++ E R + + FV +++ YCK
Sbjct: 165 LTARKFFDKVPYELKDVVIWTVMVDGYAKKGEMEDAREVFELMPERNYFVWSSMVCGYCK 224
Query: 109 CGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGV 168
GDV +A+ +F ++ ++ W +MI G +G G+ AL+ F +M DE T V V
Sbjct: 225 KGDVMEAEAIFRRIPVRNLEIWNSMIAGYVQNGCGEKALEAFGEMGVDGFEPDEFTVVSV 284
Query: 169 LSACTH 174
LSAC
Sbjct: 285 LSACAQ 290
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
D+F+G A++ Y KCG V A++VF M ++ TW AMI G +G +AL F +M
Sbjct: 85 DVFIGTAIVAAYAKCGVVCDARKVFDLMPERNVVTWNAMIGGYLRNGDAKSALLAFEEM 143
>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
Length = 695
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 100/186 (53%), Gaps = 22/186 (11%)
Query: 10 NMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 69
N+K D ++ ++++ YI G +D AR+ F ++ E+D V WT MI G + + +AL L
Sbjct: 251 NLK-PDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLL 309
Query: 70 FREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCK 108
F EM N R D +T ++++ N+D+ V AL+DMYCK
Sbjct: 310 FSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDLLVSSALVDMYCK 369
Query: 109 CGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGV 168
CG A +F M ++ +W +MI G A++G AL ++ ML +++ D VT+VGV
Sbjct: 370 CGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENLKPDSVTFVGV 429
Query: 169 LSACTH 174
LSAC H
Sbjct: 430 LSACVH 435
Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 94/192 (48%), Gaps = 21/192 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ A ++F M +D SW ++S Y G V+ R F MP RD V + +I G+
Sbjct: 74 ISHARKLFDEMTQRDNFSWNAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGN 133
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILT---------------------TFNNDIFVG 99
R AL +F MQ ++ E+T V +L ++FV
Sbjct: 134 GRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVC 193
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL D+Y +CG++++A+R+F +M+ ++ TW MI G + + +D+F +M ++++
Sbjct: 194 NALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLK 253
Query: 160 LDEVTYVGVLSA 171
D+VT VL A
Sbjct: 254 PDQVTASSVLGA 265
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 81/148 (54%), Gaps = 14/148 (9%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT 85
Y G++D AR+ F +M R+ V W MI GYL+ + + + LF EMQ SN++ D+ T
Sbjct: 200 YARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTA 259
Query: 86 VRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDT 145
+L Y + G +++A++VF ++ KD+ WT MIVG A +G +
Sbjct: 260 SSVLGA--------------YIQAGYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEED 305
Query: 146 ALDMFSQMLRASIRLDEVTYVGVLSACT 173
AL +FS+ML + R D T V+S+C
Sbjct: 306 ALLLFSEMLLENARPDGYTISSVVSSCA 333
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 32/141 (22%)
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
R AL FR +R + + + + ND F+ L+++Y K G++ A+++F +M
Sbjct: 27 RLALECFRASDVDQAKRLK-SHMHLHLFKPNDTFIHNRLLNLYAKSGEISHARKLFDEMT 85
Query: 124 RKDKFTWTAM-------------------------------IVGLAISGHGDTALDMFSQ 152
++D F+W AM I G A +G G AL +F +
Sbjct: 86 QRDNFSWNAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLR 145
Query: 153 MLRASIRLDEVTYVGVLSACT 173
M + ++ E T+V VL+ACT
Sbjct: 146 MQKEGLKPTEYTHVSVLNACT 166
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 69/165 (41%), Gaps = 22/165 (13%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
N D++ + +V Y G A F+ M R+ V W +MI GY + EAL+L+
Sbjct: 354 NDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEALSLYEN 413
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM-----LRKDK 127
M N++ D T FVG+ + G VE+ + F M L
Sbjct: 414 MLEENLKPDSVT------------FVGV--LSACVHAGLVEEGKEYFCSMSDQHGLEPTP 459
Query: 128 FTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+ M+ SGH D A+D+ S M S + + + VLS C
Sbjct: 460 DHYACMVNLFGRSGHMDKAVDLISSM---SQEPNSLIWTTVLSVC 501
>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
[Oryza sativa Japonica Group]
gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
[Oryza sativa Japonica Group]
Length = 808
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 65/192 (33%), Positives = 96/192 (50%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A IF M KDV+SW TI+SGYI+ G +D A + F MP ++ + W M+ GY+
Sbjct: 358 AKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLS 417
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
+AL LF +M+ +++ ++T + F G AL
Sbjct: 418 EDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNAL 477
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+ MY KCG V A+ VF M D +W AMI L GHG AL++F QM+ I D
Sbjct: 478 LTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDR 537
Query: 163 VTYVGVLSACTH 174
++++ +L+AC H
Sbjct: 538 ISFLTILTACNH 549
Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 63/225 (28%), Positives = 98/225 (43%), Gaps = 56/225 (24%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++ M +KD ++WTT+V GY+ RG V+ AR F ++ + V+W AMI GY++
Sbjct: 222 ARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMC 281
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIF-------------------------V 98
+A LFR M + + DEFT +L+ N F V
Sbjct: 282 ADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPV 341
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISG----------------- 141
AL+ +Y K G + A+R+F M KD +W ++ G SG
Sbjct: 342 NNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKND 401
Query: 142 -----------HG---DTALDMFSQMLRASIRLDEVTYVGVLSAC 172
HG + AL +F+QM ++ + TY G ++AC
Sbjct: 402 LSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAAC 446
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 52/218 (23%), Positives = 92/218 (42%), Gaps = 60/218 (27%)
Query: 17 ISWTTIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
++ T++V+ + G++ A +F +P RD VL AM+ + R + A+++F +
Sbjct: 95 VAATSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALL 154
Query: 75 TS-NIRRDEFTTVRILTTFNND-----------------------IFVGIALIDMYCKCG 110
S ++R D+++ +++ + V ALI +Y KC
Sbjct: 155 GSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCD 214
Query: 111 DVE---KAQRVFWKMLRKDKFTWTAMIVGLA--------------------------ISG 141
E A++V +M KD TWT M+VG ISG
Sbjct: 215 TPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISG 274
Query: 142 HGDT-----ALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+ + A ++F +M+ + LDE T+ VLSAC +
Sbjct: 275 YVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACAN 312
>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
Length = 830
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 65/192 (33%), Positives = 96/192 (50%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A IF M KDV+SW TI+SGYI+ G +D A + F MP ++ + W M+ GY+
Sbjct: 356 AKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLS 415
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
+AL LF +M+ +++ ++T + F G AL
Sbjct: 416 EDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNAL 475
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+ MY KCG V A+ VF M D +W AMI L GHG AL++F QM+ I D
Sbjct: 476 LTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDR 535
Query: 163 VTYVGVLSACTH 174
++++ +L+AC H
Sbjct: 536 ISFLTILTACNH 547
Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 63/225 (28%), Positives = 98/225 (43%), Gaps = 56/225 (24%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++ M +KD ++WTT+V GY+ RG V+ AR F ++ + V+W AMI GY++
Sbjct: 220 ARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMC 279
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIF-------------------------V 98
+A LFR M + + DEFT +L+ N F V
Sbjct: 280 ADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPV 339
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISG----------------- 141
AL+ +Y K G + A+R+F M KD +W ++ G SG
Sbjct: 340 NNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKND 399
Query: 142 -----------HG---DTALDMFSQMLRASIRLDEVTYVGVLSAC 172
HG + AL +F+QM ++ + TY G ++AC
Sbjct: 400 LSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAAC 444
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 52/215 (24%), Positives = 89/215 (41%), Gaps = 60/215 (27%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRVNRFREALTLFREMQTS- 76
T++V+ G++ A +F +P RD VL AM+ + R + A+++F + S
Sbjct: 96 TSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSG 155
Query: 77 NIRRDEFTTVRILTTFNND-----------------------IFVGIALIDMYCKCGDVE 113
++R D+++ +++ + V ALI +Y KC E
Sbjct: 156 SLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPE 215
Query: 114 ---KAQRVFWKMLRKDKFTWTAMIVGLA--------------------------ISGHGD 144
A++V +M KD TWT M+VG ISG+
Sbjct: 216 ASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQ 275
Query: 145 T-----ALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+ A ++F +M+ + LDE T+ VLSAC +
Sbjct: 276 SGMCADAFELFRRMVSEKVPLDEFTFTSVLSACAN 310
>gi|357153639|ref|XP_003576518.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Brachypodium distachyon]
Length = 538
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 68/197 (34%), Positives = 101/197 (51%), Gaps = 25/197 (12%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A ++F M + V +W ++S Y+ G+VD A +F +MP RD V WT +I G
Sbjct: 205 LGDAGKVFDEMPERTVAAWNCMLSAYVRCGEVDAALHFFGEMPGRDAVAWTTVIAGCANA 264
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT----------------FNND------IFV 98
R EA+ LF M+ + ++ D T V +LT + D + +
Sbjct: 265 GRAAEAVDLFWRMRKARVKDDAVTMVALLTACAELGDLQLGRWVHARVDQDGQDQRIVLL 324
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
ALI MY +CG VE A +F +M R+ +WT MI GLAI G + AL++F +M
Sbjct: 325 DNALIHMYVRCGAVEDAHCMFLRMPRRSTVSWTTMISGLAIHGRAEEALELFRRMEE--- 381
Query: 159 RLDEVTYVGVLSACTHN 175
R D T + VL AC+H+
Sbjct: 382 RPDGATLLAVLWACSHS 398
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 31/106 (29%)
Query: 98 VGIALIDMYC-------------------------------KCGDVEKAQRVFWKMLRKD 126
V +L+DMY +CG+V+ A F +M +D
Sbjct: 191 VMTSLLDMYATAGQLGDAGKVFDEMPERTVAAWNCMLSAYVRCGEVDAALHFFGEMPGRD 250
Query: 127 KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
WT +I G A +G A+D+F +M +A ++ D VT V +L+AC
Sbjct: 251 AVAWTTVIAGCANAGRAAEAVDLFWRMRKARVKDDAVTMVALLTAC 296
>gi|297734518|emb|CBI15765.3| unnamed protein product [Vitis vinifera]
Length = 375
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 99/181 (54%), Gaps = 21/181 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+I+ I++ + G+ D A++ F +M RD V W +MI G +R RF EAL FREM
Sbjct: 114 DLITANLIIASLMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFREML 173
Query: 75 TSNIRRDEFT-------TVRILTTFNNDIFVGI--------------ALIDMYCKCGDVE 113
SN+ D FT R+ ++ + ++ G+ ALID+Y KCG +
Sbjct: 174 NSNVEPDGFTFASVINGCARLGSSHHAELVHGLMIEKKIQLNFILSSALIDLYSKCGRIN 233
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
A++VF + D W +MI GLAI G A+ +FSQM S+ D +T++G+L+AC+
Sbjct: 234 TAKKVFNSIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEMESVSPDSITFIGILTACS 293
Query: 174 H 174
H
Sbjct: 294 H 294
>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 642
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 68/197 (34%), Positives = 103/197 (52%), Gaps = 25/197 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F NM +DV SW +++GY G +D A F +MP R+ V WT MI GY +
Sbjct: 188 AGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLA 247
Query: 64 REALTLFREM--QTSNIRRDEFTTVRILTT---------------------FNNDIFVGI 100
++AL+LF EM + S +R + T + +L N++ V I
Sbjct: 248 QQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLI 307
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDK--FTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
AL MY KCG + A+ F K+ R +K W MI A GHG A+ F +M++A I
Sbjct: 308 ALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGI 367
Query: 159 RLDEVTYVGVLSACTHN 175
+ D++T+ G+LS C+H+
Sbjct: 368 QPDDITFTGLLSGCSHS 384
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
D++V +LI +Y KCG++ A +VF M +D +W A++ G SG D AL +F +M
Sbjct: 168 DLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERM 226
>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Cucumis sativus]
Length = 679
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 68/197 (34%), Positives = 103/197 (52%), Gaps = 25/197 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F NM +DV SW +++GY G +D A F +MP R+ V WT MI GY +
Sbjct: 225 AGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLA 284
Query: 64 REALTLFREM--QTSNIRRDEFTTVRILTT---------------------FNNDIFVGI 100
++AL+LF EM + S +R + T + +L N++ V I
Sbjct: 285 QQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLI 344
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDK--FTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
AL MY KCG + A+ F K+ R +K W MI A GHG A+ F +M++A I
Sbjct: 345 ALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGI 404
Query: 159 RLDEVTYVGVLSACTHN 175
+ D++T+ G+LS C+H+
Sbjct: 405 QPDDITFTGLLSGCSHS 421
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 21/155 (13%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+ +V+ Y + G +D + F + E +L+ +MI Y R + + M +
Sbjct: 109 SKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFT 168
Query: 80 RDEFT-------TVRILTTFNN--------------DIFVGIALIDMYCKCGDVEKAQRV 118
D FT +V +L+ + D++V +LI +Y KCG++ A +V
Sbjct: 169 GDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKV 228
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
F M +D +W A++ G SG D AL +F +M
Sbjct: 229 FDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERM 263
>gi|356534169|ref|XP_003535630.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Glycine max]
Length = 595
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 62/190 (32%), Positives = 99/190 (52%), Gaps = 21/190 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F + ++++ ++ Y+ V AR+ F +MPE+D + WT+MI G ++ RE+
Sbjct: 233 VFKCLYGEELVVCNAVLDMYMKCDSVTDARKMFDEMPEKDIISWTSMIGGLVQCQSPRES 292
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDM 105
L LF +MQ S D +L+ + D+ +G L+DM
Sbjct: 293 LDLFSQMQASGFEPDGVILTSVLSACASLGLLDCGRWVHEYIDCHRIKWDVHIGTTLVDM 352
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y KCG ++ AQR+F M K+ TW A I GLAI+G+G AL F ++ + R +EVT+
Sbjct: 353 YAKCGCIDMAQRIFNGMPSKNIRTWNAYIGGLAINGYGKEALKQFEDLVESGTRPNEVTF 412
Query: 166 VGVLSACTHN 175
+ V +AC HN
Sbjct: 413 LAVFTACCHN 422
Score = 85.5 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 59/179 (32%), Positives = 83/179 (46%), Gaps = 24/179 (13%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ T+V Y G A + F M RD V WT +I GY++ F EA++LF M
Sbjct: 143 DIYVQNTLVHVYSICGDNVGAGKVFEDMLVRDVVSWTGLISGYVKTGLFNEAISLFLRM- 201
Query: 75 TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVE 113
N+ + T V IL + ++ V A++DMY KC V
Sbjct: 202 --NVEPNVGTFVSILGACGKLGRLNLGKGIHGLVFKCLYGEELVVCNAVLDMYMKCDSVT 259
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
A+++F +M KD +WT+MI GL +LD+FSQM + D V VLSAC
Sbjct: 260 DARKMFDEMPEKDIISWTSMIGGLVQCQSPRESLDLFSQMQASGFEPDGVILTSVLSAC 318
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 82 EFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISG 141
+F +V + T DI+V L+ +Y CGD A +VF ML +D +WT +I G +G
Sbjct: 130 QFHSVSVKTGLWCDIYVQNTLVHVYSICGDNVGAGKVFEDMLVRDVVSWTGLISGYVKTG 189
Query: 142 HGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+ A+ +F LR ++ + T+V +L AC
Sbjct: 190 LFNEAISLF---LRMNVEPNVGTFVSILGAC 217
>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 63/192 (32%), Positives = 104/192 (54%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F ++DV+S+T +++GY ++G + A++ F ++P +D V W AMI GY
Sbjct: 142 ARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNN 201
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
+EAL LF+EM +N+R DE T V +++ F +++ + AL
Sbjct: 202 KEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNAL 261
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
ID+Y KCG+VE A +F + KD +W +I G AL +F +MLR+ ++
Sbjct: 262 IDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPND 321
Query: 163 VTYVGVLSACTH 174
VT + +L AC H
Sbjct: 322 VTMLSILPACAH 333
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 63/177 (35%), Positives = 96/177 (54%), Gaps = 23/177 (12%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
++ YI G+V+ A F + +D + W +I GY +N ++EAL LF+EM S +
Sbjct: 261 LIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPN 320
Query: 82 EFTTVRILTT---------------FNNDIFVGIA--------LIDMYCKCGDVEKAQRV 118
+ T + IL + N G+A LIDMY KCGD+E AQ+V
Sbjct: 321 DVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQV 380
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
F +L + +W AMI G A+ G + A D+FS+M + I D++T+VG+LSAC+H+
Sbjct: 381 FDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHS 437
Score = 65.9 bits (159), Expect = 7e-09, Method: Composition-based stats.
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 49/161 (30%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ T+++S Y+ G+++ AR+ F Q RD V +T
Sbjct: 122 DLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYT----------------------- 158
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
ALI Y G + AQ++F ++ KD +W AMI
Sbjct: 159 --------------------------ALITGYASKGYIASAQKMFDEIPIKDVVSWNAMI 192
Query: 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
G A +G+ AL++F +M++ ++R DE T V V+SAC +
Sbjct: 193 SGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQS 233
>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 63/192 (32%), Positives = 104/192 (54%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F ++DV+S+T +++GY ++G + A++ F ++P +D V W AMI GY
Sbjct: 157 ARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNN 216
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
+EAL LF+EM +N+R DE T V +++ F +++ + AL
Sbjct: 217 KEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNAL 276
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
ID+Y KCG+VE A +F + KD +W +I G AL +F +MLR+ ++
Sbjct: 277 IDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPND 336
Query: 163 VTYVGVLSACTH 174
VT + +L AC H
Sbjct: 337 VTMLSILPACAH 348
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 63/177 (35%), Positives = 96/177 (54%), Gaps = 23/177 (12%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
++ YI G+V+ A F + +D + W +I GY +N ++EAL LF+EM S +
Sbjct: 276 LIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPN 335
Query: 82 EFTTVRILTT---------------FNNDIFVGIA--------LIDMYCKCGDVEKAQRV 118
+ T + IL + N G+A LIDMY KCGD+E AQ+V
Sbjct: 336 DVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQV 395
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
F +L + +W AMI G A+ G + A D+FS+M + I D++T+VG+LSAC+H+
Sbjct: 396 FDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHS 452
Score = 65.9 bits (159), Expect = 7e-09, Method: Composition-based stats.
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 49/161 (30%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ T+++S Y+ G+++ AR+ F Q RD V +T
Sbjct: 137 DLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYT----------------------- 173
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
ALI Y G + AQ++F ++ KD +W AMI
Sbjct: 174 --------------------------ALITGYASKGYIASAQKMFDEIPIKDVVSWNAMI 207
Query: 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
G A +G+ AL++F +M++ ++R DE T V V+SAC +
Sbjct: 208 SGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQS 248
>gi|296083752|emb|CBI23741.3| unnamed protein product [Vitis vinifera]
Length = 545
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 67/193 (34%), Positives = 105/193 (54%), Gaps = 23/193 (11%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE 65
++F M ++ SW +++GY G + + R+ F +M R+ WTAMI+GY+ E
Sbjct: 180 KVFDEMTIRNSGSWNVLIAGYAVSGNLVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDE 239
Query: 66 ALTLFREMQT-SNIRRDEFTTVRILTT---------------------FNNDIFVGIALI 103
AL+LFR+MQ I + + V +L NN++ + ALI
Sbjct: 240 ALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALI 299
Query: 104 DMYCKCGDVEKAQRVFW-KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
DMY KCG ++ A+RVF L KD +W++MI G + G G A+ ++ +ML+A IR D
Sbjct: 300 DMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDM 359
Query: 163 VTYVGVLSACTHN 175
+T VG+LSAC+ +
Sbjct: 360 ITTVGILSACSRS 372
Score = 75.9 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 52/194 (26%), Positives = 87/194 (44%), Gaps = 57/194 (29%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFT---------- 84
+R F + ++ LW ++I+GY + + EA LF +M +S++ D+FT
Sbjct: 77 SRLVFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSE 136
Query: 85 -------------TVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF----------W- 120
++RI F +D V +++ MYCKCG+ E++++VF W
Sbjct: 137 LGALFSGKSIHGKSIRI--GFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWN 194
Query: 121 --------------------KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM-LRASIR 159
+M ++ F+WTAMI G +G D AL +F M + I
Sbjct: 195 VLIAGYAVSGNLVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIE 254
Query: 160 LDEVTYVGVLSACT 173
+ V+ V VL AC+
Sbjct: 255 PNRVSLVSVLPACS 268
>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 101/192 (52%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +IF M +++I+W I+SGY+N G+++ A+ +F +MP ++ + T MI G +
Sbjct: 347 ARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFG 406
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
E L LF++M+ +F LT + + + VG A+
Sbjct: 407 DEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAM 466
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I MY KCG VE A+ VF M D +W +MI L GHG A+++F QML+ + D
Sbjct: 467 ISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDR 526
Query: 163 VTYVGVLSACTH 174
+T++ VL+AC+H
Sbjct: 527 ITFLTVLTACSH 538
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 99/226 (43%), Gaps = 56/226 (24%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +D ++WTT+++GY+ ++ AR+ F M E W AMI GY+ F
Sbjct: 211 ARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCF 270
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN-------------------------DIFV 98
+EALTL R+M+ I+ D+ T I++ N + V
Sbjct: 271 QEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSV 330
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA-------------------------- 132
ALI +YCK V++A+++F+ M ++ TW A
Sbjct: 331 SNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNL 390
Query: 133 -----MIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
MI GLA +G GD L +F QM + + G L+AC+
Sbjct: 391 LTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACS 436
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 100/238 (42%), Gaps = 68/238 (28%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRV 60
+A ++F + N D I+ TT+++ Y G +++ R+ F P RD V + AMI GY
Sbjct: 66 YARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHN 125
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVG--------------------- 99
AL LFR M+ + R D+FT +L+ +FVG
Sbjct: 126 GDGHSALELFRAMRRDDFRPDDFTFTSVLSALV--LFVGNEQQCGQMHCAVVKTGMGCVS 183
Query: 100 ----IALIDMYCK--------CGDVEKAQRVFWKMLRKDKFTWTAMIVGLA--------- 138
AL+ +Y K C + A+++F +M ++D+ TWT MI G
Sbjct: 184 SSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAR 243
Query: 139 -----------------ISGHGDT-----ALDMFSQMLRASIRLDEVTYVGVLSACTH 174
ISG+ AL + +M I+ D++TY ++SAC +
Sbjct: 244 EVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACAN 301
>gi|242048094|ref|XP_002461793.1| hypothetical protein SORBIDRAFT_02g008110 [Sorghum bicolor]
gi|241925170|gb|EER98314.1| hypothetical protein SORBIDRAFT_02g008110 [Sorghum bicolor]
Length = 601
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 100/193 (51%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M KDV+SWT +VS Y G +D AR F QMP+++ V W AMI GY +R+
Sbjct: 262 ARTLFDLMDRKDVVSWTAMVSAYAKIGDLDSARVLFDQMPDKNLVSWNAMITGYNHNSRY 321
Query: 64 REALTLFREMQTSN-IRRDEFTTVRILTTF-------------------NNDIFV--GIA 101
EAL F++M DE T V +++ N I V G A
Sbjct: 322 DEALRTFQQMMLEGRFMPDEATLVSVVSACAQLGSVEYCNWISSYISKSNTHITVALGNA 381
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDM+ KCGDV +A+ F KM + TWT MI G A +G AL ++S + R + LD
Sbjct: 382 LIDMFAKCGDVGRARLAFDKMKTRCVITWTTMISGFAYNGQFREALLIYSDICREGVTLD 441
Query: 162 EVTYVGVLSACTH 174
+ ++ L+AC H
Sbjct: 442 DTIFIAALAACAH 454
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 75/192 (39%), Gaps = 45/192 (23%)
Query: 28 NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI--------- 78
+ G V +AR+ F M +RD V W +++ Y+ A+ LF + N+
Sbjct: 162 DPGDVGVARKVFDGMADRDVVSWNSIVGVYMSSGDTTGAMELFEAIPERNVVSWNTIVAA 221
Query: 79 --RRDEFTTVRIL-----------------------------TTFN----NDIFVGIALI 103
R + + + T F+ D+ A++
Sbjct: 222 FTRAGDMVSAHAVFDRMPIRDAISWNLMISGYAGSGNVESARTLFDLMDRKDVVSWTAMV 281
Query: 104 DMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ-MLRASIRLDE 162
Y K GD++ A+ +F +M K+ +W AMI G + D AL F Q ML DE
Sbjct: 282 SAYAKIGDLDSARVLFDQMPDKNLVSWNAMITGYNHNSRYDEALRTFQQMMLEGRFMPDE 341
Query: 163 VTYVGVLSACTH 174
T V V+SAC
Sbjct: 342 ATLVSVVSACAQ 353
>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 101/192 (52%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +IF M +++I+W I+SGY+N G+++ A+ +F +MP ++ + T MI G +
Sbjct: 347 ARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFG 406
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
E L LF++M+ +F LT + + + VG A+
Sbjct: 407 DEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAM 466
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I MY KCG VE A+ VF M D +W +MI L GHG A+++F QML+ + D
Sbjct: 467 ISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDR 526
Query: 163 VTYVGVLSACTH 174
+T++ VL+AC+H
Sbjct: 527 ITFLTVLTACSH 538
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 99/226 (43%), Gaps = 56/226 (24%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +D ++WTT+++GY+ ++ AR+ F M E W AMI GY+ F
Sbjct: 211 ARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCF 270
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN-------------------------DIFV 98
+EALTL R+M+ I+ D+ T I++ N + V
Sbjct: 271 QEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSV 330
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA-------------------------- 132
ALI +YCK V++A+++F+ M ++ TW A
Sbjct: 331 SNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNL 390
Query: 133 -----MIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
MI GLA +G GD L +F QM + + G L+AC+
Sbjct: 391 LTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACS 436
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 100/238 (42%), Gaps = 68/238 (28%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRV 60
+A ++F + N D I+ TT+++ Y G +++ R+ F P RD V + AMI GY
Sbjct: 66 YARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHN 125
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVG--------------------- 99
AL LFR M+ + R D+FT +L+ +FVG
Sbjct: 126 GDGHSALELFRAMRRDDFRPDDFTFTSVLSALV--LFVGNEQQCGQMHCAVVKTGMGCVS 183
Query: 100 ----IALIDMYCK--------CGDVEKAQRVFWKMLRKDKFTWTAMIVGLA--------- 138
AL+ +Y K C + A+++F +M ++D+ TWT MI G
Sbjct: 184 SSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAR 243
Query: 139 -----------------ISGHGDT-----ALDMFSQMLRASIRLDEVTYVGVLSACTH 174
ISG+ AL + +M I+ D++TY ++SAC +
Sbjct: 244 EVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACAN 301
>gi|115482212|ref|NP_001064699.1| Os10g0442700 [Oryza sativa Japonica Group]
gi|31432332|gb|AAP53975.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113639308|dbj|BAF26613.1| Os10g0442700 [Oryza sativa Japonica Group]
gi|215694632|dbj|BAG89823.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768315|dbj|BAH00544.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 493
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 100/202 (49%), Gaps = 28/202 (13%)
Query: 2 GFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVN 61
G A +F + + +SW ++ GY + AR+ FA+MP+RD V W+AMIDG ++
Sbjct: 115 GLARRLFDEIPRPNHVSWNALLDGYAKCRDLPAARRVFARMPQRDVVSWSAMIDGCVKCG 174
Query: 62 RFREALTLFREMQTSNIRRD-----EFTTVRILTT---------------------FNND 95
REAL +F M+ + R D + T V +L F +
Sbjct: 175 EHREALAVFEMMEATAARHDGVRANDVTMVSVLGACAHLGDLVRGRKMHRYLEEHGFPLN 234
Query: 96 IFVGIALIDMYCKCGDVEKAQRVFWKML--RKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
I + +L+DMY KCG + +A VF + D W A+I GLA+ G +L MF +M
Sbjct: 235 IRLATSLVDMYAKCGAIVEALEVFQAVPVENTDVLIWNAVIGGLAVHGMSRESLQMFQKM 294
Query: 154 LRASIRLDEVTYVGVLSACTHN 175
A + DE+TY+ +LSAC H
Sbjct: 295 EHAGVVPDEITYLSLLSACVHG 316
>gi|326496937|dbj|BAJ98495.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 491
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 102/189 (53%), Gaps = 21/189 (11%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 67
F M ++V+SW ++ Y + G + AR+ F MP R+ W++M+ G +R NR EAL
Sbjct: 162 FDAMPERNVVSWNAMLGAYASAGMLSKARKLFDIMPSRNAASWSSMVTGLVRSNRCEEAL 221
Query: 68 TLFREMQTSNIRRDEFTTVR------ILTTFNNDIFV---------------GIALIDMY 106
+F EM + +E V +L + + ++V A++DMY
Sbjct: 222 RVFSEMIGMGVVPNESALVSAVSACSLLRSLEHGVWVHAYAKRELQGMSLVLATAIVDMY 281
Query: 107 CKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYV 166
KCG + A RVF M K+ ++W +MI GLA++G AL +F +M A +R +++T++
Sbjct: 282 GKCGGIHNAVRVFAAMPVKNIYSWNSMITGLAMNGREMQALSLFWKMQMAGVRPNDITFI 341
Query: 167 GVLSACTHN 175
G+L AC+H+
Sbjct: 342 GLLGACSHS 350
>gi|413939596|gb|AFW74147.1| hypothetical protein ZEAMMB73_269656 [Zea mays]
Length = 524
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 100/198 (50%), Gaps = 29/198 (14%)
Query: 4 ALEIFGNM---KNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
A +FG + DV SWT++++ G VD AR F MP R+ V W+AM+ Y+
Sbjct: 143 ARRLFGGAVASRAADVCSWTSLLTACAKAGHVDEARALFDGMPRRNDVAWSAMLSAYVAA 202
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN------------------------DI 96
F +A+ LF +M S +R + V +LT D
Sbjct: 203 GSFGDAVRLFEDMLRSCVRPNRAAVVGVLTACGALGALDQGRWVHALLVGGGGHGVAMDG 262
Query: 97 FVGIALIDMYCKCGDVEKAQRVFWKMLR--KDKFTWTAMIVGLAISGHGDTALDMFSQML 154
V AL+DMY KCG +E A++VF R +D F +TAMI GL+ G A+D+F QML
Sbjct: 263 VVATALVDMYAKCGSLETARQVFAAAPRGQRDVFAYTAMISGLSDHGRCGEAIDLFGQML 322
Query: 155 RASIRLDEVTYVGVLSAC 172
+R +EVT++ VL+AC
Sbjct: 323 VEGVRPNEVTFICVLTAC 340
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 65/155 (41%), Gaps = 27/155 (17%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRVNRFREALTLFRE 72
D + T +V Y G ++ ARQ FA P +RD +TAMI G R EA+ LF +
Sbjct: 261 DGVVATALVDMYAKCGSLETARQVFAAAPRGQRDVFAYTAMISGLSDHGRCGEAIDLFGQ 320
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIA----------------------LIDMYCKCG 110
M +R +E T + +LT VG A L+D+ + G
Sbjct: 321 MLVEGVRPNEVTFICVLTACGRAGLVGRAKEVFRSMGAVHGMEPGVEHYGCLVDVLGRAG 380
Query: 111 DVEKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGD 144
+ A M +R D + A++ A + HGD
Sbjct: 381 QLADALEAVRSMPMRPDSYVLGALLN--ACAAHGD 413
>gi|357150569|ref|XP_003575504.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 548
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +D ISW T++SGY+ RG +AR F +MP+R+ W MI V +
Sbjct: 193 ARQVFDGMVERDSISWNTLMSGYLRRGDAGLARDLFDEMPQRNVNSWNMMISACSEVGLW 252
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIA---------------------L 102
+++ +F +M+ + R D T +++ F+ +A L
Sbjct: 253 ADSVAVFNQMRFMSFRPDAATMAVLMSACAQLGFLSVARQVYGLLRKGCVEMNCHVHNSL 312
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DM+ KCG +A +F +M KD ++ M+ LA GHG AL +F QM+ ++ D
Sbjct: 313 VDMFAKCGCFSEAHLLFAEMDPKDVVSYNVMVSALAHHGHGKDALKLFEQMIEGGLQPDA 372
Query: 163 VTYVGVLSACTH 174
VT++GVLSAC H
Sbjct: 373 VTFLGVLSACAH 384
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
T++ Y N +V AR+ F +MP + V+ AM+ GY++ A +F M + R
Sbjct: 148 TLLDSYGNLCRVKDARRVFDEMPRSNVVVGNAMVSGYVKAGDVEAARQVFDGM----VER 203
Query: 81 DEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAIS 140
D ++N L+ Y + GD A+ +F +M +++ +W MI +
Sbjct: 204 DSI-------SWN-------TLMSGYLRRGDAGLARDLFDEMPQRNVNSWNMMISACSEV 249
Query: 141 GHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
G ++ +F+QM S R D T ++SAC
Sbjct: 250 GLWADSVAVFNQMRFMSFRPDAATMAVLMSACAQ 283
>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 592
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 66/181 (36%), Positives = 96/181 (53%), Gaps = 21/181 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D +VS Y G V IAR+ F +MPE+ V W +MI GY + +EA+ LF MQ
Sbjct: 152 DAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQ 211
Query: 75 TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVE 113
++ D T V +L+ F+ ++ +G AL++MY +CG+V
Sbjct: 212 DLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVS 271
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
KA+ VF M K+ WTAMI G + GHG A+++F++M R + VT+V VLSAC
Sbjct: 272 KAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACA 331
Query: 174 H 174
H
Sbjct: 332 H 332
>gi|242049246|ref|XP_002462367.1| hypothetical protein SORBIDRAFT_02g024490 [Sorghum bicolor]
gi|241925744|gb|EER98888.1| hypothetical protein SORBIDRAFT_02g024490 [Sorghum bicolor]
Length = 532
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 67/193 (34%), Positives = 97/193 (50%), Gaps = 25/193 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M + V +W +++ Y+ G+VD A ++F +MP RD V WT MI G R
Sbjct: 197 ARKVFDEMLTRAVAAWNCMLAAYVRCGEVDAALRFFGEMPRRDAVAWTTMIGGCANAGRA 256
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN----------------------DIFVGIA 101
EA+ LF M+ + ++ D T V +LT + + A
Sbjct: 257 AEAVDLFWRMRKARVKDDTVTMVALLTACAELGDLELGRWVHARVDLEGSQWRTVLLDNA 316
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LI MY KCG +E A+ +F M R+ +WT MI GLAI GH AL++F +M R D
Sbjct: 317 LIHMYLKCGAIEDARCLFGMMPRRSTVSWTTMISGLAIHGHPQEALNLFHRM---QDRPD 373
Query: 162 EVTYVGVLSACTH 174
T + VL AC+H
Sbjct: 374 GATMLAVLRACSH 386
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 31/106 (29%)
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKML-------------------------------RKD 126
V +L+ +Y +E A++VF +ML R+D
Sbjct: 180 VMTSLVGVYAAARQLEDARKVFDEMLTRAVAAWNCMLAAYVRCGEVDAALRFFGEMPRRD 239
Query: 127 KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
WT MI G A +G A+D+F +M +A ++ D VT V +L+AC
Sbjct: 240 AVAWTTMIGGCANAGRAAEAVDLFWRMRKARVKDDTVTMVALLTAC 285
>gi|242077724|ref|XP_002448798.1| hypothetical protein SORBIDRAFT_06g033370 [Sorghum bicolor]
gi|241939981|gb|EES13126.1| hypothetical protein SORBIDRAFT_06g033370 [Sorghum bicolor]
Length = 577
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 68/192 (35%), Positives = 93/192 (48%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F M K+VISWTT++ + G R F +MPER+ V W ++ Y R RF
Sbjct: 232 AKELFAAMPVKNVISWTTMIRALSDAGDFAGMRGLFDRMPERNLVSWNCILSSYTRHGRF 291
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
+AL +F M + D FT V +L+ N VG AL
Sbjct: 292 WQALQMFPRMLLEGLNPDSFTVVSVLSACENLRKLRLGRWIHANLVTPALQVHAEVGTAL 351
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
++MY CGDV +A VF KM KD F+W MI LA+ D AL +F M + +
Sbjct: 352 VEMYAMCGDVARAFVVFLKMYSKDVFSWNVMIRALAVHRRADDALRLFGVMRKQGFGPNH 411
Query: 163 VTYVGVLSACTH 174
T++GVL AC +
Sbjct: 412 FTFMGVLLACRY 423
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 49/172 (28%), Positives = 72/172 (41%), Gaps = 18/172 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A +F ++K + +VS Y+ G V AR+ F M RD V W AM+ Y+R
Sbjct: 167 LGDARRVFDGFRDKSIGLSNRMVSVYVRAGDVTSAREVFDAMETRDVVSWNAMLTAYVRT 226
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
A LF M N+ +TT +I GD + +F
Sbjct: 227 ADIVAAKELFAAMPVKNVI--SWTT----------------MIRALSDAGDFAGMRGLFD 268
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+M ++ +W ++ G AL MF +ML + D T V VLSAC
Sbjct: 269 RMPERNLVSWNCILSSYTRHGRFWQALQMFPRMLLEGLNPDSFTVVSVLSAC 320
>gi|255572939|ref|XP_002527400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533210|gb|EEF34966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 621
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 102/201 (50%), Gaps = 29/201 (14%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER--------DYVLWTAMID 55
A +F MKNK + SW +++ + G D A + F+Q+ + V W+A+ID
Sbjct: 232 AWNLFLEMKNKSLASWNALITSHAEAGLCDEALEIFSQLERSGDCPRLRPNVVSWSAIID 291
Query: 56 GYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT---------------------TFNN 94
G+ R +EAL LFR MQ + I + T +L+ N
Sbjct: 292 GFASKGREKEALELFRRMQHAKILANAVTISTVLSLCAELAALHLGREIHGHVVRAVMVN 351
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML 154
+I VG L++MY KCG +++ +F K RKD +W +MI G + G G AL+ F QM+
Sbjct: 352 NILVGNGLVNMYAKCGCLKEGHMIFEKTERKDLISWNSMITGYGMHGLGMNALETFDQMI 411
Query: 155 RASIRLDEVTYVGVLSACTHN 175
+ + D VT+V VLS+C+H+
Sbjct: 412 KLGFKPDGVTFVAVLSSCSHS 432
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 80/178 (44%), Gaps = 25/178 (14%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYI----NRGQVDIARQYFAQMPERDYVLWTAMIDGYLR 59
A +F M + ISW T+VS Y G ++I ++ ++ E + V WT++I Y R
Sbjct: 96 ARHLFDRMSVRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPNLVTWTSLISSYAR 155
Query: 60 VNRFREALTLFREMQTSNIRRD---------------EFTTVRILTT------FNNDIFV 98
EA+ LF M+ + F +I+ F FV
Sbjct: 156 SGWHEEAMELFGLMRMKGVEVSGEALAVVISICADLGAFVRAKIIHEYAVKGGFEEYSFV 215
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156
ALI +Y K GDV A +F +M K +W A+I A +G D AL++FSQ+ R+
Sbjct: 216 KSALICVYGKHGDVNGAWNLFLEMKNKSLASWNALITSHAEAGLCDEALEIFSQLERS 273
Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%)
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
F + + VG LI MY K G + A+ +F +M + +W M+ A + + AL++F
Sbjct: 73 FQSHLHVGNELIGMYAKLGRMRDARHLFDRMSVRSYISWNTMVSAYAFNYDCNGALEIFQ 132
Query: 152 QMLRASIRLDEVTYVGVLSA 171
+M + + VT+ ++S+
Sbjct: 133 RMESEGMEPNLVTWTSLISS 152
>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
Length = 679
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 62/193 (32%), Positives = 101/193 (52%), Gaps = 21/193 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F +M KD SW ++++G++ G + A++ F +MPE++ V WT M++G+ +
Sbjct: 229 ATELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDP 288
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
+AL F M R +++T V L+ F ++ +G AL
Sbjct: 289 EKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTAL 348
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY KCG++E A++VF + K W+ MI G AI GH AL F M + D
Sbjct: 349 VDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDS 408
Query: 163 VTYVGVLSACTHN 175
V ++ VL+AC+H+
Sbjct: 409 VVFLAVLNACSHS 421
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 55/258 (21%), Positives = 89/258 (34%), Gaps = 91/258 (35%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINR----GQVDIARQYFAQMPERDYVLWTAMIDGYLRVN 61
+I G + +V S + +V+ +I+ VD A F + ++ L+ A+I G +
Sbjct: 60 QIHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRFELKNSYLFNALIRGLAENS 119
Query: 62 RFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGI 100
RF +++ F M I D T +L + D FV +
Sbjct: 120 RFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFGLEFDSFVRV 179
Query: 101 ALIDM-----------------------------------YCKCGDVEKAQRVFWKMLRK 125
+L+DM YC+ GD+ KA +F M +K
Sbjct: 180 SLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKATELFDSMPKK 239
Query: 126 DK-------------------------------FTWTAMIVGLAISGHGDTALDMFSQML 154
D +WT M+ G + +G + AL+ F ML
Sbjct: 240 DTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCML 299
Query: 155 RASIRLDEVTYVGVLSAC 172
R ++ T V LSAC
Sbjct: 300 EEGARPNDYTIVSALSAC 317
>gi|297607983|ref|NP_001061009.2| Os08g0153600 [Oryza sativa Japonica Group]
gi|255678154|dbj|BAF22923.2| Os08g0153600 [Oryza sativa Japonica Group]
Length = 551
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 68/197 (34%), Positives = 105/197 (53%), Gaps = 23/197 (11%)
Query: 1 MGFALEIFGNMKNK-DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR 59
M A E F N K D + WT +VSGY++ G V A +YF MP R+ V W A++ GY++
Sbjct: 158 MSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVK 217
Query: 60 VNRFREALTLFREM-QTSNIRRDEFTTVRILTTFNN---------------------DIF 97
+ +AL LFR M + +N++ + T +L +N ++
Sbjct: 218 NSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLT 277
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
VG +L+ MYCKCGD+ A ++F +M +D W AMI G A G G A+++F +M
Sbjct: 278 VGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEG 337
Query: 158 IRLDEVTYVGVLSACTH 174
+ + +T+V VL+AC H
Sbjct: 338 VEPNWITFVAVLTACIH 354
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 22/118 (18%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T++VS Y G + A + F +M RD V W AMI GY + +EA+ LF M+ +
Sbjct: 280 TSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVE 339
Query: 80 RDEFTTVRILTT--------FNNDIFVGI--------------ALIDMYCKCGDVEKA 115
+ T V +LT F F G+ ++D+ C+ G +E+A
Sbjct: 340 PNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERA 397
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 20/141 (14%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR-VNRFREALTLFREMQTSNI 78
T V+ + RG + A + FA P + + ++ GY R + R +A LF + T +
Sbjct: 21 TVAVAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPTPDA 80
Query: 79 RRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLA 138
++N L+ + GD + A+R+F M +D +W M+ GL+
Sbjct: 81 -----------VSYN-------TLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLS 122
Query: 139 ISGHGDTALDMFSQM-LRASI 158
SG + A +F M +R S+
Sbjct: 123 KSGAVEEAKAVFLAMPVRNSV 143
>gi|255542982|ref|XP_002512554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548515|gb|EEF50006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 544
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 104/193 (53%), Gaps = 21/193 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F M K V + ++ G+ G+V A+ F QM E+D W+AMI Y R
Sbjct: 253 AAELFEAMPMKPVPACNEMIIGFGQSGEVGKAKWTFDQMREKDDGTWSAMIKVYERKGLE 312
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
EAL LFR MQ +R + + + IL+ F+ D++V L
Sbjct: 313 LEALDLFRLMQREGVRPNFPSIISILSVCGSLASLDYGRQVHTQLVRSQFDFDVYVSSVL 372
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I MY KCGD+ KA+RVF + KD W ++I G A G G+ AL++F +ML + I DE
Sbjct: 373 ITMYIKCGDLVKAKRVFDRFSMKDTVMWNSIITGYAQHGLGEEALEVFFEMLSSGISPDE 432
Query: 163 VTYVGVLSACTHN 175
+T++GVL+AC+++
Sbjct: 433 ITFIGVLTACSYS 445
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 89/169 (52%), Gaps = 18/169 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A EIF M ++V++WTT++SGY +VD+AR+ F MP+++ V WTAM+ GY R R
Sbjct: 191 AREIFDEMPKRNVVAWTTMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLMGYTRSGRI 250
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+EA LF M + N++ +G + + G+V KA+ F +M
Sbjct: 251 KEAAELFEAMPMKPV------------PACNEMIIG------FGQSGEVGKAKWTFDQMR 292
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
KD TW+AMI G ALD+F M R +R + + + +LS C
Sbjct: 293 EKDDGTWSAMIKVYERKGLELEALDLFRLMQREGVRPNFPSIISILSVC 341
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 94/186 (50%), Gaps = 19/186 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +++ +SW ++SGY+ G ++ AR+ F +MPER+ V WTAM+ GY++
Sbjct: 67 AHDLFNKMPDRNTVSWNGLISGYVKNGMINEAREVFDKMPERNVVSWTAMVRGYIQEGMI 126
Query: 64 REALTLFREMQTSNI--------------RRDEFTTVRILTTFNNDIFVGIALIDMYCKC 109
++A +LF EM N+ R +E + L D+ +I C
Sbjct: 127 KQAESLFWEMPEKNVVSWTVMLGGLIEDGRVNEAIKLYDLMPL-KDVVARTNMIGGLCME 185
Query: 110 GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVL 169
G + +A+ +F +M +++ WT MI G A++ D A +F M +EVT+ +L
Sbjct: 186 GRLSEAREIFDEMPKRNVVAWTTMISGYAMNNKVDVARKLFEVMPDK----NEVTWTAML 241
Query: 170 SACTHN 175
T +
Sbjct: 242 MGYTRS 247
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 18/150 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +IF + K +ISW IV+GY Q A F +MP+R+ V W +I GY++
Sbjct: 36 ARKIFDELPYKTIISWNAIVAGYFQNKQPREAHDLFNKMPDRNTVSWNGLISGYVKNGMI 95
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
EA +F +M N + A++ Y + G +++A+ +FW+M
Sbjct: 96 NEAREVFDKMPERN------------------VVSWTAMVRGYIQEGMIKQAESLFWEMP 137
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
K+ +WT M+ GL G + A+ ++ M
Sbjct: 138 EKNVVSWTVMLGGLIEDGRVNEAIKLYDLM 167
>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
Length = 644
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 65/191 (34%), Positives = 98/191 (51%), Gaps = 27/191 (14%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 67
F M K+ +SWT+++ R +D AR +F Q+PE+ + W AMI Y++ RF EAL
Sbjct: 269 FDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEAL 328
Query: 68 TLFREMQTSNIRRDEFTTVRILT--------------------TFNNDIFVGIA----LI 103
L+ M+ + DEFT +L+ F+N G+A L+
Sbjct: 329 DLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFHNP---GVALFNSLL 385
Query: 104 DMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEV 163
DMY +CG V+ A +F +M K+ +W A+I LA+ G AL F M+ + DE+
Sbjct: 386 DMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRSMVSDAFPPDEI 445
Query: 164 TYVGVLSACTH 174
T+V +LSAC H
Sbjct: 446 TFVALLSACNH 456
Score = 87.0 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 55/180 (30%), Positives = 85/180 (47%), Gaps = 32/180 (17%)
Query: 1 MGFALEIF-GNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR 59
+GF ++F GN ++ Y + G + +R++F +M +R+ V W +MI+GY +
Sbjct: 139 LGFVGQVFVGN----------ALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQ 188
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFV 98
REA +LF M+ + DEFT V +L + D+ +
Sbjct: 189 AGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLIL 248
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
AL+DMY KCGD+ A F M K+ +WT+M+ LA D A D F Q+ SI
Sbjct: 249 ANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSI 308
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 21/165 (12%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G V ARQ F ++P+ D ++ ++I Y + +EAL L R M I +EFT +L
Sbjct: 58 GGVWYARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLL 117
Query: 90 TT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
F +FVG AL+ Y G + ++R F +M+ ++
Sbjct: 118 KACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVV 177
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+W +MI G A +G+ A +F M R + DE T V +L AC+
Sbjct: 178 SWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACS 222
Score = 59.3 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 23/168 (13%)
Query: 10 NMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 69
N N V + +++ Y GQVD A F++MP ++ + W A+I R ++AL
Sbjct: 372 NFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMF 431
Query: 70 FREMQTSNIRRDEFTTVRILTTFNN------------------DIFVGI----ALIDMYC 107
FR M + DE T V +L+ N+ ++ G+ ++D+
Sbjct: 432 FRSMVSDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLG 491
Query: 108 KCGDVEKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQML 154
+ G + KA + M +R D W A++ I GH + Q+L
Sbjct: 492 RGGQLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQLL 539
>gi|356567066|ref|XP_003551744.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 488
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 100/182 (54%), Gaps = 21/182 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV+SW+ ++ ++ G++++AR+ F +MP+RD V WTAM+ GY + R REAL LF EM+
Sbjct: 176 DVVSWSGLLVAHVKAGELEVARRVFDEMPQRDVVSWTAMLTGYSQAKRPREALELFGEMR 235
Query: 75 TSNIRRDEFTTVRILTTFNN--DIFVGI-------------------ALIDMYCKCGDVE 113
S + DE T V +++ + D+ G+ ALIDMY KCG +E
Sbjct: 236 RSGVWPDEVTMVSLVSACASLGDMETGMMVHRFVEENGFGWMVALCNALIDMYGKCGCLE 295
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+A RVF M RK TW M+ A G+ D A +F M+ + + D VT + +L A
Sbjct: 296 EAWRVFHGMTRKSLITWNTMVTVCANYGNADEAFRLFEWMVCSGVVPDSVTLLALLVAYA 355
Query: 174 HN 175
H
Sbjct: 356 HK 357
>gi|225456505|ref|XP_002280974.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50990
[Vitis vinifera]
Length = 523
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 99/181 (54%), Gaps = 21/181 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+I+ I++ + G+ D A++ F +M RD V W +MI G +R RF EAL FREM
Sbjct: 87 DLITANLIIASLMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFREML 146
Query: 75 TSNIRRDEFT-------TVRILTTFNNDIFVGI--------------ALIDMYCKCGDVE 113
SN+ D FT R+ ++ + ++ G+ ALID+Y KCG +
Sbjct: 147 NSNVEPDGFTFASVINGCARLGSSHHAELVHGLMIEKKIQLNFILSSALIDLYSKCGRIN 206
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
A++VF + D W +MI GLAI G A+ +FSQM S+ D +T++G+L+AC+
Sbjct: 207 TAKKVFNSIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEMESVSPDSITFIGILTACS 266
Query: 174 H 174
H
Sbjct: 267 H 267
>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 640
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 64/194 (32%), Positives = 106/194 (54%), Gaps = 22/194 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++FG M +++ SW +++GY G++ +AR+ F +MP RD V W+ MI G+ F
Sbjct: 188 AQDVFGCMPVRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCF 247
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNND------------------IFVGI---AL 102
EA FRE+ IR +E + +L+ ++VG AL
Sbjct: 248 DEAFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNAL 307
Query: 103 IDMYCKCGDVEKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
ID Y KCG+V A+ VF M + + +WT++I GLA+ G G+ A+ +F +M + +R D
Sbjct: 308 IDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPD 367
Query: 162 EVTYVGVLSACTHN 175
+T++ +L AC+H+
Sbjct: 368 GITFISLLYACSHS 381
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 79/155 (50%), Gaps = 18/155 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
TT++S Y G AR+ F +M E + V W A++ R A +F M
Sbjct: 142 TTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCGDVEGAQDVFGCM------ 195
Query: 80 RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAI 139
VR LT++N ++ Y K G++ A+RVF++M +D+ +W+ MIVG A
Sbjct: 196 -----PVRNLTSWN-------GMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAH 243
Query: 140 SGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+G D A F ++LR IR +EV+ GVLSAC
Sbjct: 244 NGCFDEAFGFFRELLREEIRTNEVSLTGVLSACAQ 278
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 34/62 (54%)
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
F+ IFVG LI MY +CGD A+RVF +M + TW A++ G + A D+F
Sbjct: 134 FDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCGDVEGAQDVFG 193
Query: 152 QM 153
M
Sbjct: 194 CM 195
>gi|359491588|ref|XP_002281032.2| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g61800 [Vitis vinifera]
Length = 576
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F KDV+S+ ++ G+I G D AR+ F +MP RD V W ++ GY +
Sbjct: 183 ACQVFNETSLKDVVSYNALIGGFIKVGDTDRARRLFDKMPIRDAVSWGTLLAGYAQSGDL 242
Query: 64 -REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIA 101
+A+ LF M S +R D V L+ + F+
Sbjct: 243 CMDAIQLFNRMLISTVRPDNIALVSALSACAQLGELEQGKSIHVYIKQNRIPINAFLSTG 302
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+D+Y KCG +E A+ +F K+ FTW A++VGL + G G +L FS+M+ A I+ D
Sbjct: 303 LVDLYAKCGCIETAREIFESSPDKNLFTWNALLVGLGMHGRGHLSLHYFSRMIEAGIKPD 362
Query: 162 EVTYVGVLSACTH 174
V+++G+L C H
Sbjct: 363 GVSFLGILVGCGH 375
>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
Length = 610
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 105/197 (53%), Gaps = 23/197 (11%)
Query: 1 MGFALEIFGNMKNK-DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR 59
MG A ++F N K D I WT +VSGY++ G V A ++F MP R+ V W A++ GY++
Sbjct: 155 MGAAEDLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEFFGAMPVRNLVSWNAVVAGYVK 214
Query: 60 VNRFREALTLFREM-QTSNIRRDEFTTVRILTTFNN---------------------DIF 97
+R +AL +F+ M + S ++ + T +L +N ++
Sbjct: 215 NSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGFGRQVHQWCMKLPLSRNVT 274
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
VG +L+ MYCKCGD+ A +VF +M KD W AMI G A G G A+ +F +M
Sbjct: 275 VGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYAQHGGGMQAIKLFEKMKDEG 334
Query: 158 IRLDEVTYVGVLSACTH 174
+ D +T + VL+AC H
Sbjct: 335 VVPDWITLLAVLTACIH 351
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 15/186 (8%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F ++ + D +S+ T++S + G +D AR+ F+ MP +D W M+ G +
Sbjct: 65 ARRLFDSIPHPDTVSYNTLLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGAS 124
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------FNN-----DIFVGIALIDMYCKC 109
EA +FR M N + + F N D + A++ Y
Sbjct: 125 EEAAAMFRIMPVRNAVSWNAMVAALACSGDMGAAEDLFRNAPEKTDAILWTAMVSGYMDT 184
Query: 110 GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI-RLDEVTYVGV 168
G+V+KA F M ++ +W A++ G + D AL +F M+ SI + + T V
Sbjct: 185 GNVQKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSV 244
Query: 169 LSACTH 174
L C++
Sbjct: 245 LLGCSN 250
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 21/137 (15%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVN---RFREALTLFREMQTS 76
T V+ + RG + A + FA + + ++ GY + + R +A LF +
Sbjct: 16 TVAVAAAVRRGDLAGAEEAFASTQLKTTTTYNCLLAGYAKASGLIRLADARRLFDSIPHP 75
Query: 77 NIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVG 136
+ ++N L+ + CGD++ A+RVF M KD +W M+ G
Sbjct: 76 DT-----------VSYNT-------LLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSG 117
Query: 137 LAISGHGDTALDMFSQM 153
L+ +G + A MF M
Sbjct: 118 LSKNGASEEAAAMFRIM 134
>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
Length = 638
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 64/192 (33%), Positives = 99/192 (51%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A F M K V+SWT+++ G V+ AR +F MPER+ V W AMI Y++ +
Sbjct: 267 ARRCFEMMPIKSVVSWTSMLCAQTKHGSVNAARCWFDHMPERNIVSWNAMISCYVQRGQC 326
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
EAL L+ +MQ+ + DE T V +L+ +N D+ + +L
Sbjct: 327 HEALDLYNQMQSQGLAPDEITLVAVLSASGRIGDLTVGKMVHLYIRDNIYNPDVSLVNSL 386
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY KCG V+ A +F +M ++ +W +I GLA+ G + F M+ S D
Sbjct: 387 LDMYAKCGQVDTAISLFSEMCNRNVVSWNVIIGGLAMHGRALDTITFFRSMVTDSFAPDG 446
Query: 163 VTYVGVLSACTH 174
+T+V +LSAC+H
Sbjct: 447 ITFVALLSACSH 458
Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 58/204 (28%), Positives = 88/204 (43%), Gaps = 56/204 (27%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
++ Y + G + +R++F +M +R+ V W +MI GY + RE +LF EM+ D
Sbjct: 153 LLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMIGGYAQAGDTREVCSLFGEMRRQGFLED 212
Query: 82 EFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVEKAQRVFW 120
EFT V +L + D+ + AL+DMY KCGD+ A+R F
Sbjct: 213 EFTLVSLLIACSQEGNLEIGRLVHCRMLVSGSRVDLILESALVDMYGKCGDLWMARRCFE 272
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDT---------------------------------AL 147
M K +WT+M+ A + HG AL
Sbjct: 273 MMPIKSVVSWTSMLC--AQTKHGSVNAARCWFDHMPERNIVSWNAMISCYVQRGQCHEAL 330
Query: 148 DMFSQMLRASIRLDEVTYVGVLSA 171
D+++QM + DE+T V VLSA
Sbjct: 331 DLYNQMQSQGLAPDEITLVAVLSA 354
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 21/161 (13%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT--------- 85
AR+ F +P D V++ +I Y + REAL L R M I +EFT
Sbjct: 65 ARRLFDGIPGPDRVMYNTIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLPFVVKACTI 124
Query: 86 ------------VRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
V + +FVG AL+ Y G + ++R F +M+ ++ +W +M
Sbjct: 125 AQAREHALAVHGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSM 184
Query: 134 IVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
I G A +G +F +M R DE T V +L AC+
Sbjct: 185 IGGYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQ 225
>gi|125541284|gb|EAY87679.1| hypothetical protein OsI_09093 [Oryza sativa Indica Group]
Length = 493
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 99/194 (51%), Gaps = 21/194 (10%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
AL++F M + +++ T++SG + G V A + F MP D V WTA+IDG ++ R
Sbjct: 123 LALQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGR 182
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIA 101
EA+ FR M + D T + +++ ++ + +
Sbjct: 183 HDEAINCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANS 242
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMY +CG VE A++VF M ++ +W +MIVG A +G A++ F M R + D
Sbjct: 243 LIDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPD 302
Query: 162 EVTYVGVLSACTHN 175
VT+ GVL+AC+H
Sbjct: 303 AVTFTGVLTACSHG 316
>gi|242042285|ref|XP_002468537.1| hypothetical protein SORBIDRAFT_01g047570 [Sorghum bicolor]
gi|241922391|gb|EER95535.1| hypothetical protein SORBIDRAFT_01g047570 [Sorghum bicolor]
Length = 495
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 102/205 (49%), Gaps = 33/205 (16%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F + +++SW ++ GY + ARQ FA+MP+RD V W+AMIDG ++
Sbjct: 114 AHRVFDEIPRPNLVSWNALLDGYAKCRDLPAARQVFARMPQRDVVSWSAMIDGCVKCGEH 173
Query: 64 REALTLFREMQTS----------NIRRDEFTTVRILTTFNN------------------- 94
REAL LF M+ + R ++ T V +L N
Sbjct: 174 REALALFEMMENAAARSVEDGGGGARANDVTMVSVLGACANLGDLERGRWVHRCLRERGF 233
Query: 95 --DIFVGIALIDMYCKCGDVEKAQRVFWKML--RKDKFTWTAMIVGLAISGHGDTALDMF 150
++ + +L+DMY KCG + +A +FW + D W A+I GLA+ G ++++F
Sbjct: 234 PLNLKLATSLVDMYAKCGAIHEALEMFWAVPVESTDVLIWNAVIGGLAVHGMATESVEIF 293
Query: 151 SQMLRASIRLDEVTYVGVLSACTHN 175
+M A + DE+TY+ +LSAC H
Sbjct: 294 QEMQCAGVAPDEITYLCLLSACVHG 318
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 89 LTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALD 148
L D+ V +L+ MY C + A RVF ++ R + +W A++ G A A
Sbjct: 88 LGLLPADLHVANSLVHMYAACAMPDHAHRVFDEIPRPNLVSWNALLDGYAKCRDLPAARQ 147
Query: 149 MFSQMLRASIRLDEVTYVGVLSACT 173
+F++M + D V++ ++ C
Sbjct: 148 VFARM----PQRDVVSWSAMIDGCV 168
>gi|147860852|emb|CAN83162.1| hypothetical protein VITISV_022557 [Vitis vinifera]
Length = 562
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 99/181 (54%), Gaps = 21/181 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+I+ I++ + G+ D A++ F +M RD V W +MI G +R RF EAL FREM
Sbjct: 126 DLITANLIIASLMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFREML 185
Query: 75 TSNIRRDEFT-------TVRILTTFNNDIFVGI--------------ALIDMYCKCGDVE 113
SN+ D FT R+ ++ + ++ G+ ALID+Y KCG +
Sbjct: 186 NSNVEPDGFTFASVINGCARLGSSHHAELVHGLMIEKKIQLNFILSSALIDLYSKCGRIN 245
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
A++VF + D W +MI GLAI G A+ +FSQM S+ D +T++G+L+AC+
Sbjct: 246 TAKKVFNSIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEMESVSPDSITFIGILTACS 305
Query: 174 H 174
H
Sbjct: 306 H 306
>gi|125574942|gb|EAZ16226.1| hypothetical protein OsJ_31678 [Oryza sativa Japonica Group]
Length = 387
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 100/202 (49%), Gaps = 28/202 (13%)
Query: 2 GFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVN 61
G A +F + + +SW ++ GY + AR+ FA+MP+RD V W+AMIDG ++
Sbjct: 9 GLARRLFDEIPRPNHVSWNALLDGYAKCRDLPAARRVFARMPQRDVVSWSAMIDGCVKCG 68
Query: 62 RFREALTLFREMQTSNIRRD-----EFTTVRILTT---------------------FNND 95
REAL +F M+ + R D + T V +L F +
Sbjct: 69 EHREALAVFEMMEATAARHDGVRANDVTMVSVLGACAHLGDLVRGRKMHRYLEEHGFPLN 128
Query: 96 IFVGIALIDMYCKCGDVEKAQRVFWKML--RKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
I + +L+DMY KCG + +A VF + D W A+I GLA+ G +L MF +M
Sbjct: 129 IRLATSLVDMYAKCGAIVEALEVFQAVPVENTDVLIWNAVIGGLAVHGMSRESLQMFQKM 188
Query: 154 LRASIRLDEVTYVGVLSACTHN 175
A + DE+TY+ +LSAC H
Sbjct: 189 EHAGVVPDEITYLSLLSACVHG 210
>gi|414883628|tpg|DAA59642.1| TPA: hypothetical protein ZEAMMB73_113196, partial [Zea mays]
Length = 635
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 61/181 (33%), Positives = 93/181 (51%), Gaps = 21/181 (11%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
+DV++W +++GY+ G V +AR+ F MP RD V W+ +I GY++ AL +F+ M
Sbjct: 197 RDVVTWNAVLAGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNM 256
Query: 74 QTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDV 112
++ +E V L+ + +G ALIDMY KCG V
Sbjct: 257 VAQGVKANEAAIVTALSAAAQLGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSV 316
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
A+ VF M R+D F W +MI GLA G G A+ +F + + +T+VGVL+AC
Sbjct: 317 AAAKEVFDAMPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNAC 376
Query: 173 T 173
+
Sbjct: 377 S 377
Score = 38.5 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
D++V A I Y CGDV ++VF ++ + +D TW A++ G +G A ++F M
Sbjct: 166 DLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVVTWNAVLAGYVRAGMVGVAREVFDGM 225
Query: 154 LRASIRLDEVTYVGVL 169
+R DEV++ V+
Sbjct: 226 ---PVR-DEVSWSTVI 237
>gi|414883627|tpg|DAA59641.1| TPA: hypothetical protein ZEAMMB73_113196 [Zea mays]
Length = 637
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 61/181 (33%), Positives = 93/181 (51%), Gaps = 21/181 (11%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
+DV++W +++GY+ G V +AR+ F MP RD V W+ +I GY++ AL +F+ M
Sbjct: 197 RDVVTWNAVLAGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNM 256
Query: 74 QTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDV 112
++ +E V L+ + +G ALIDMY KCG V
Sbjct: 257 VAQGVKANEAAIVTALSAAAQLGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSV 316
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
A+ VF M R+D F W +MI GLA G G A+ +F + + +T+VGVL+AC
Sbjct: 317 AAAKEVFDAMPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNAC 376
Query: 173 T 173
+
Sbjct: 377 S 377
Score = 38.5 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
D++V A I Y CGDV ++VF ++ + +D TW A++ G +G A ++F M
Sbjct: 166 DLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVVTWNAVLAGYVRAGMVGVAREVFDGM 225
Query: 154 LRASIRLDEVTYVGVL 169
+R DEV++ V+
Sbjct: 226 ---PVR-DEVSWSTVI 237
>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 588
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 60/162 (37%), Positives = 94/162 (58%), Gaps = 21/162 (12%)
Query: 34 IARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT--- 90
I + F M E+D V+W AMI G ++ R ++AL LF+EMQTSN DE T + L+
Sbjct: 248 IVSKLFDDMEEKDVVMWNAMIGGSVQAKRSQDALALFQEMQTSNTDPDEITMIHCLSACS 307
Query: 91 ------------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA 132
+ + ++ +G +L+DMY KCG++ +A VF + ++ T+TA
Sbjct: 308 QLGALDVGIWIHRYIEKHSLSLNVALGTSLVDMYAKCGNISEALCVFHGIQTRNSLTYTA 367
Query: 133 MIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+I GLA+ G TA+ F++M+ A I DE+T++G+LSAC H
Sbjct: 368 IIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCH 409
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 34/179 (18%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G+++ AR+ F + P RD V W +I+GY ++ +A+ +++ M++ ++ D+ T + ++
Sbjct: 130 GEMENARKVFDESPVRDLVSWNCLINGYKKIGEGEKAIEVYKVMESEGVKPDDVTMIGLV 189
Query: 90 TT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWK------- 121
++ I + AL+DM+ KCGD+ +A+R+F
Sbjct: 190 SSCAMLGDLNRGKEFYEYVKANGLRMTIPLANALMDMFSKCGDIHEARRIFDNLEKRTIV 249
Query: 122 ------MLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
M KD W AMI G + AL +F +M ++ DE+T + LSAC+
Sbjct: 250 SKLFDDMEEKDVVMWNAMIGGSVQAKRSQDALALFQEMQTSNTDPDEITMIHCLSACSQ 308
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 44/72 (61%)
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
A I M+ CG++E A++VF + +D +W +I G G G+ A++++ M ++
Sbjct: 121 ASIHMFASCGEMENARKVFDESPVRDLVSWNCLINGYKKIGEGEKAIEVYKVMESEGVKP 180
Query: 161 DEVTYVGVLSAC 172
D+VT +G++S+C
Sbjct: 181 DDVTMIGLVSSC 192
>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 736
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 62/187 (33%), Positives = 101/187 (54%), Gaps = 21/187 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F +D +S+T +++GY++ G VD AR+ F ++P +D V W AMI GY++ RF EA
Sbjct: 184 VFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEA 243
Query: 67 LTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDM 105
L F MQ +++ ++ T V +L+ F ++ + AL+DM
Sbjct: 244 LACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDM 303
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y KCG++ A+++F M KD W MI G + AL +F MLR ++ ++VT+
Sbjct: 304 YSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTF 363
Query: 166 VGVLSAC 172
+ VL AC
Sbjct: 364 LAVLPAC 370
Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats.
Identities = 60/178 (33%), Positives = 94/178 (52%), Gaps = 25/178 (14%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
+V Y G++ AR+ F M ++D +LW MI GY ++ + EAL LF M N+ +
Sbjct: 300 LVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPN 359
Query: 82 EFTTVRIL-------------------------TTFNNDIFVGIALIDMYCKCGDVEKAQ 116
+ T + +L T N++ + ++I MY KCG VE A+
Sbjct: 360 DVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAE 419
Query: 117 RVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+VF M + +W AMI GLA++GH + AL +F +M+ + D++T+VGVLSACT
Sbjct: 420 QVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQ 477
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 18/124 (14%)
Query: 51 TAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCG 110
T++I Y +V R A +F + +T+R +F ALI Y G
Sbjct: 166 TSLIHMYSQVGELRHARLVFDK-----------STLRDAVSFT-------ALITGYVSEG 207
Query: 111 DVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLS 170
V+ A+R+F ++ KD +W AMI G SG + AL F++M A + ++ T V VLS
Sbjct: 208 HVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLS 267
Query: 171 ACTH 174
AC H
Sbjct: 268 ACGH 271
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 64/157 (40%), Gaps = 25/157 (15%)
Query: 9 GNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALT 68
GN+ N V WT+I+ Y G V++A Q F M R W AMI G AL
Sbjct: 394 GNVNN--VSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALG 451
Query: 69 LFREMQTSNIRRDEFTTVRILTTFNNDIFV--------------GIA--------LIDMY 106
LF EM + D+ T V +L+ FV GI+ +ID+
Sbjct: 452 LFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLL 511
Query: 107 CKCGDVEKAQRVFWKM-LRKDKFTWTAMIVGLAISGH 142
+ G ++A+ + M + D W +++ I G
Sbjct: 512 ARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQ 548
>gi|357446911|ref|XP_003593731.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482779|gb|AES63982.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 520
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 110/197 (55%), Gaps = 23/197 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G+ +F M K+VIS T+++SGY+N+G D A F + ++D V++ AMI+GY +V
Sbjct: 193 VGYGRTVFDVMSEKNVISSTSLISGYMNKGFFDDAEYIFRKTLDKDVVVFNAMIEGYSKV 252
Query: 61 NRFR-EALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFV 98
+ + +L ++ +MQ N R + T I+ T F I +
Sbjct: 253 SEYAMRSLEVYIDMQRLNFRPNLSTFASIIGACSVLAAFEIGEQVQAQLMKTPFFAVIKL 312
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM-LRAS 157
G ALIDMY KCG V AQRVF ML K+ F+WT+MI G +G D AL++F +M + S
Sbjct: 313 GSALIDMYSKCGRVIDAQRVFDHMLEKNVFSWTSMIDGYGKNGFPDEALELFKKMQIEYS 372
Query: 158 IRLDEVTYVGVLSACTH 174
I + VT++ L+AC H
Sbjct: 373 ITPNFVTFLSALTACAH 389
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 79/205 (38%), Gaps = 57/205 (27%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT 85
YI + ARQ F + +R + MI GYL+ + E+L LF ++ S + D FT
Sbjct: 82 YIKSHSLRYARQVFDDLHDRTLSAYNYMIGGYLKNGQVDESLDLFHQLSVSGEKPDGFTF 141
Query: 86 VRILTTFNNDIFVGI-------------------------ALIDMYCKCGDV-------- 112
IL N + G+ ALID Y K G V
Sbjct: 142 SMILKASTNRVSNGMVGDLGRMVHAQILKFDVEKDDVLCTALIDSYVKNGRVGYGRTVFD 201
Query: 113 -----------------------EKAQRVFWKMLRKDKFTWTAMIVGLA-ISGHGDTALD 148
+ A+ +F K L KD + AMI G + +S + +L+
Sbjct: 202 VMSEKNVISSTSLISGYMNKGFFDDAEYIFRKTLDKDVVVFNAMIEGYSKVSEYAMRSLE 261
Query: 149 MFSQMLRASIRLDEVTYVGVLSACT 173
++ M R + R + T+ ++ AC+
Sbjct: 262 VYIDMQRLNFRPNLSTFASIIGACS 286
>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 790
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 96/192 (50%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A IF M KD++SW ++SGY++ G + A+ F +M E++ + W MI G
Sbjct: 339 ARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFG 398
Query: 64 REALTLFREMQTSNIRR---------------------DEFTTVRILTTFNNDIFVGIAL 102
E L LF M+ +F + F++ + G AL
Sbjct: 399 EEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNAL 458
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I MY KCG VE+AQ+VF M D +W A+I L GHG A+D++ +ML+ IR D
Sbjct: 459 ITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDR 518
Query: 163 VTYVGVLSACTH 174
+T++ VL+AC+H
Sbjct: 519 ITFLTVLTACSH 530
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 86/176 (48%), Gaps = 21/176 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER-DYVLWTAMIDGYLRVNR 62
A ++F ++ KD SWTT+++GY+ G D+ ++ M E V + AMI GY+
Sbjct: 207 ARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGL 266
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGI--------------------AL 102
++EAL + R M +S I DEFT ++ N + + +L
Sbjct: 267 YQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRREDFSFHFDNSL 326
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
+ +Y KCG +A+ +F KM KD +W A++ G SGH A +F +M +I
Sbjct: 327 VTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNI 382
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 98/234 (41%), Gaps = 60/234 (25%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYL 58
+ +A ++F + D I+ TT+VSGY G + +AR F + P RD V++ AMI G+
Sbjct: 65 LDYARQLFDEISEPDKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFS 124
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILT-------------TFNNDIF-------- 97
N A+ LF +M+ + D+FT +L F+
Sbjct: 125 HNNDGYSAINLFCKMKHEGFKPDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVT 184
Query: 98 -VGIALIDMYCKCGD----VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGD-------- 144
V AL+ +Y +C + A++VF + KD+ +WT M+ G +G D
Sbjct: 185 SVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKG 244
Query: 145 ------------------------TALDMFSQMLRASIRLDEVTYVGVLSACTH 174
AL+M +M+ + I LDE TY V+ AC +
Sbjct: 245 MDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACAN 298
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILT-TFNNDIFVGIALIDMYCKCGDVEKAQRV 118
NR+ L L ++ ++++ I+T F + LID+YCK +++ A+++
Sbjct: 12 ANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQL 71
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
F ++ DK T M+ G SG A +F + S+R D V Y +++ +HN
Sbjct: 72 FDEISEPDKIARTTMVSGYCASGDIALARSVFEET-PVSMR-DTVMYNAMITGFSHN 126
>gi|56783979|dbj|BAD81434.1| pentatricopeptide (PPR) repeat-containing protein -like [Oryza
sativa Japonica Group]
Length = 503
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 98/183 (53%), Gaps = 21/183 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ DV+SW ++ GY+ G + AR+ F MP R+ V WT +I Y ++ + EA+ +FR
Sbjct: 139 SADVVSWNVMIDGYVKSGDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRR 198
Query: 73 MQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGD 111
MQ I D + +L+ + +I + A+IDMY KCG
Sbjct: 199 MQVEGIEPDGVALLSVLSACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGS 258
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
V+KA VF M +K TWT MI G A+ G G A+++F +M + ++ +++T++ VLS
Sbjct: 259 VKKALEVFEGMEQKSIVTWTTMIAGFALHGLGLEAVELFRRMEKENVSPNDITFLAVLSV 318
Query: 172 CTH 174
C+H
Sbjct: 319 CSH 321
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%)
Query: 90 TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDM 149
T + D+ +ID Y K GD+ +A+ +F M ++ +WT +I A + A+++
Sbjct: 136 TAASADVVSWNVMIDGYVKSGDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEV 195
Query: 150 FSQMLRASIRLDEVTYVGVLSAC 172
F +M I D V + VLSAC
Sbjct: 196 FRRMQVEGIEPDGVALLSVLSAC 218
>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
Length = 672
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 60/192 (31%), Positives = 104/192 (54%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F ++DV+S+T +++GY +RG ++ A++ F ++P +D V W AMI GY +
Sbjct: 129 AQKVFDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNY 188
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
++AL LF+EM +N++ DE T +++ F +++ + AL
Sbjct: 189 KKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNAL 248
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
ID+Y KCG+VE A + + KD +W +I G AL +F +MLR+ ++
Sbjct: 249 IDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPND 308
Query: 163 VTYVGVLSACTH 174
VT + +L AC H
Sbjct: 309 VTMLSILPACAH 320
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 56/180 (31%), Positives = 89/180 (49%), Gaps = 26/180 (14%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
++ Y G+V+ A + + +D + W +I GY +N ++EAL LF+EM S +
Sbjct: 248 LIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPN 307
Query: 82 EFTTVRIL-------------------------TTFNNDIFVGIALIDMYCKCGDVEKAQ 116
+ T + IL N + +LIDMY KCGD++ A
Sbjct: 308 DVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAP 367
Query: 117 RVF-WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
+V + TW AMI G A+ G + A D+FS+M + I D++T+VG+LSAC+H+
Sbjct: 368 QVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHS 427
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 48/189 (25%), Positives = 80/189 (42%), Gaps = 52/189 (27%)
Query: 39 FAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT------- 91
F +PE + ++W M G+ + AL L+ M + + + FT +L +
Sbjct: 32 FETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAKSKTF 91
Query: 92 --------------FNNDIFVGIALIDMYCKCGDVEKAQRVF------------------ 119
F+ D++V +LI MY + G +E AQ+VF
Sbjct: 92 KEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTALITGY 151
Query: 120 ---------WKMLR----KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYV 166
KM KD +W AMI G A +G+ AL++F +M++ +++ DE T
Sbjct: 152 ASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMA 211
Query: 167 GVLSACTHN 175
V+SAC +
Sbjct: 212 TVVSACAQS 220
>gi|125563696|gb|EAZ09076.1| hypothetical protein OsI_31338 [Oryza sativa Indica Group]
Length = 548
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 70/196 (35%), Positives = 100/196 (51%), Gaps = 25/196 (12%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A +F M + V +W +++ Y+ ++D A +F +MP RD V WT MI G +
Sbjct: 211 LGEARRVFDEMPGRTVAAWNCMLAAYVRCCEMDAALWFFNEMPGRDSVAWTTMIAGCVNA 270
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTF--NNDIFVGI------------------ 100
R EA+ LF M+ +N + D T V +LT D+ +G
Sbjct: 271 GRAAEAVELFWRMRKANAKVDAVTMVALLTACAEQGDLRLGRWVHAHVEQEGRQWRTVLL 330
Query: 101 --ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
ALI+MY KCG VE A R+F M R+ +WT MI GLAI G + ALD+F +M
Sbjct: 331 DNALINMYVKCGAVEDAHRLFLVMPRRSTVSWTTMISGLAIHGRAEEALDLFHRMQE--- 387
Query: 159 RLDEVTYVGVLSACTH 174
R D T + VL AC++
Sbjct: 388 RPDGATLLAVLLACSN 403
>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 109/195 (55%), Gaps = 24/195 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
AL++F M +D+ SW T+++G I G + AR+ F +MP+++ + WT MI G ++
Sbjct: 237 ALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGES 296
Query: 64 REALTLFREMQTSN-IRRDEFTTVRIL---------------------TTFNNDIFVGIA 101
EAL +F M ++N + ++ T V +L T + + FV A
Sbjct: 297 EEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSA 356
Query: 102 LIDMYCKCGDVEKAQRVFWKML--RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
LI+MY KCG++ A+++F + ++D +W +I A G+G A++ F +M ++ +
Sbjct: 357 LINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFK 416
Query: 160 LDEVTYVGVLSACTH 174
D+VTYVG+LSAC+H
Sbjct: 417 PDDVTYVGLLSACSH 431
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 92/171 (53%), Gaps = 33/171 (19%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQM-PERDYVLWTAMIDGYLRVNR 62
A +F M+ DVI+WTT++SGYI G ++ AR+ F ++ +++ V WTAM+ GY+R N+
Sbjct: 86 ARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGYIRSNK 145
Query: 63 FREALTLFREMQTSNI--------------RRD------EFTTVRILTTFNNDIFVGIAL 102
+A LF EM N+ R D E R + ++N +
Sbjct: 146 ISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWN-------TV 198
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+ M +CG +E+A+R+F +M +D +WTAMI GL D ALD+F +M
Sbjct: 199 MSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLL-----DEALDLFERM 244
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 96/184 (52%), Gaps = 17/184 (9%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M NK+V+SW T++ GY G++D A F +MPER+ V W ++ + R
Sbjct: 149 AEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRI 208
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---DIFVGIALIDMYC---------KCGD 111
EA LF M RD + ++ + D+F + D+ + GD
Sbjct: 209 EEARRLFDRMP----ERDVISWTAMIAGLLDEALDLFERMPERDLPSWNTMITGLIQNGD 264
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS-IRLDEVTYVGVLS 170
+ +A+++F +M +K+ +WT MI G G + AL +FS+ML + + ++ T+V VL
Sbjct: 265 LRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLG 324
Query: 171 ACTH 174
AC++
Sbjct: 325 ACSN 328
>gi|357112521|ref|XP_003558057.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 656
Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats.
Identities = 68/193 (35%), Positives = 102/193 (52%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F + + D SW ++++GY+ G V A F+ MP +D V W+ +I G ++ N+
Sbjct: 320 ARRLFDSGECLDQYSWNSMIAGYLKNGHVKDAMALFSAMPNKDNVSWSTVISGCVQNNQS 379
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
+ALT+F MQ IR DE T V +++ N + +G +L
Sbjct: 380 SDALTVFDNMQAQGIRPDEVTIVSVISACTNLSALEKGKSVHEYIKQNQYYVSLVLGTSL 439
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL-D 161
I+MY KCG +E A F M K W A+IVGLA++G +LDMFS+M + +
Sbjct: 440 INMYMKCGCLEAALEAFNIMEEKGTPCWNAVIVGLAMNGLVMKSLDMFSEMEASDTATPN 499
Query: 162 EVTYVGVLSACTH 174
E+T+ GVLSAC H
Sbjct: 500 EITFTGVLSACRH 512
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 59/193 (30%), Positives = 90/193 (46%), Gaps = 25/193 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+E+F M ++ + +++VS + RG VD AR+ F RD WTAMI + R + F
Sbjct: 188 AVEVFAQMPKRNATAVSSMVSLFGRRGMVDEARRVFDAAECRDIFTWTAMISCFERNDMF 247
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
EAL +F M+ DE V +++ + + V AL
Sbjct: 248 AEALHVFSCMRRERWHVDEPLMVSVVSACAQSEVIQNGQMCHGLVIRAGLCSQVNVQNAL 307
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I MY C DV A+R+F D+++W +MI G +GH A+ +FS M D
Sbjct: 308 IHMYSSCLDVFAARRLFDSGECLDQYSWNSMIAGYLKNGHVKDAMALFSAMPNK----DN 363
Query: 163 VTYVGVLSACTHN 175
V++ V+S C N
Sbjct: 364 VSWSTVISGCVQN 376
Score = 40.4 bits (93), Expect = 0.29, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
F +++++ ALI MY CG + A+RVF D +W ++ +G D A+++F+
Sbjct: 134 FGDNLYLRNALIFMYSACGCLWDARRVFDAGPVWDAVSWNTILAAYVHAGDVDQAVEVFA 193
Query: 152 QM 153
QM
Sbjct: 194 QM 195
>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
Length = 743
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 105/192 (54%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F ++ ++V+ + T+++G + G V +++ F M ERD + WT MI G ++
Sbjct: 192 ASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLE 251
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
EA+ LFR+M+ + D++T +LT +N+++FVG AL
Sbjct: 252 AEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSAL 311
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMYCKC V A+ VF +M K+ +WTAM+VG +G + A+ +F M R I D+
Sbjct: 312 VDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDD 371
Query: 163 VTYVGVLSACTH 174
T V+S+C +
Sbjct: 372 FTLGSVISSCAN 383
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 93/182 (51%), Gaps = 21/182 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
N +V + +V Y V A F +M ++ V WTAM+ GY + EA+ +F +
Sbjct: 302 NHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCD 361
Query: 73 MQTSNIRRDEFTTVRILTTFNND---------------------IFVGIALIDMYCKCGD 111
MQ + I D+FT ++++ N I V ALI +Y KCG
Sbjct: 362 MQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGS 421
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+E + ++F +M +D+ +WTA++ G A G + +D+F +ML ++ D VT++ VLSA
Sbjct: 422 IEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSA 481
Query: 172 CT 173
C+
Sbjct: 482 CS 483
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 96/223 (43%), Gaps = 53/223 (23%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
+A +F M + SW T++S Y G + ++ F+ MP RD V W ++I GY+
Sbjct: 58 YARHVFDKMPQPNSFSWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGS 117
Query: 63 FREALTLFREMQTS---NIRRDEFTTVRILTT-------------------FNNDIFVGI 100
EA+ + M N+ R F+T+ +L + F +FVG
Sbjct: 118 VVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGS 177
Query: 101 ALIDMYCK-------------------------------CGDVEKAQRVFWKMLRKDKFT 129
+L+DMY K G V+ ++R+F M +D +
Sbjct: 178 SLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSIS 237
Query: 130 WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
WT MI GL +G A+D+F M + + +D+ T+ VL+AC
Sbjct: 238 WTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTAC 280
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 69/158 (43%), Gaps = 22/158 (13%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+++ Y G ++ + Q F +M RD V WTA++ GY + + E + LF M ++
Sbjct: 410 NALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLK 469
Query: 80 RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT-----WTAMI 134
D T + +L+ + + G VE+ Q+ F ML+ +T MI
Sbjct: 470 PDAVTFIAVLSACS--------------RAGLVERGQQYFESMLKDHGIIPFSDHYTCMI 515
Query: 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+G + A + ++M D + + +LS+C
Sbjct: 516 DLFGRAGRLEEAKNFINKM---PFSPDSIGWATLLSSC 550
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 93 NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
N + F+ LI+ Y K G++ A+ VF KM + + F+W M+ + SG T ++FS
Sbjct: 37 NPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSWNTMLSAYSKSGDLSTMQEIFSI 96
Query: 153 M 153
M
Sbjct: 97 M 97
>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Vitis vinifera]
Length = 635
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 109/195 (55%), Gaps = 24/195 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
AL++F M +D+ SW T+++G I G + AR+ F +MP+++ + WT MI G ++
Sbjct: 258 ALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGES 317
Query: 64 REALTLFREMQTSN-IRRDEFTTVRIL---------------------TTFNNDIFVGIA 101
EAL +F M ++N + ++ T V +L T + + FV A
Sbjct: 318 EEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSA 377
Query: 102 LIDMYCKCGDVEKAQRVFWKML--RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
LI+MY KCG++ A+++F + ++D +W +I A G+G A++ F +M ++ +
Sbjct: 378 LINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFK 437
Query: 160 LDEVTYVGVLSACTH 174
D+VTYVG+LSAC+H
Sbjct: 438 PDDVTYVGLLSACSH 452
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 94/172 (54%), Gaps = 19/172 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M +DVISWT +++G G++D AR F +MPER+ V W AMI GY + R
Sbjct: 196 ARRLFDRMPERDVISWTAMIAGLSKNGRIDEARLLFDRMPERNVVSWNAMITGYAQNLRL 255
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
EAL LF M R L ++N +I + GD+ +A+++F +M
Sbjct: 256 DEALDLFERMPE-----------RDLPSWN-------TMITGLIQNGDLRRARKLFNEMP 297
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS-IRLDEVTYVGVLSACTH 174
+K+ +WT MI G G + AL +FS+ML + + ++ T+V VL AC++
Sbjct: 298 KKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSN 349
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 28/176 (15%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQM-PERDYVLWTAMIDGYLRVNR 62
A +F M+ DVI+WTT++SGYI G ++ AR+ F ++ +++ V WTAM+ GY+R N+
Sbjct: 71 ARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGYIRSNK 130
Query: 63 FREALTLFREMQTSNI--------------RRD------EFTTVRILTTFNNDIFVGIAL 102
+A LF EM N+ R D E R + ++N +
Sbjct: 131 ISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWN-------TV 183
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
+ M +CG +E+A+R+F +M +D +WTAMI GL+ +G D A +F +M ++
Sbjct: 184 MSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLSKNGRIDEARLLFDRMPERNV 239
>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
Length = 513
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 95/170 (55%), Gaps = 21/170 (12%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT 85
Y+ G + A+Q F ++ E+D V WT++I G ++ N +EAL LF++MQ+S I D
Sbjct: 177 YVKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIIL 236
Query: 86 VRILTTFNN---------------------DIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124
+L+ DI +G A++DMY KCG +E + ++F M
Sbjct: 237 TSVLSACARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPH 296
Query: 125 KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
K+ TW A++ GLA+ GH L++F +M+R +R +EVT++ +L+AC H
Sbjct: 297 KNVLTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACCH 346
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 78/160 (48%), Gaps = 24/160 (15%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT---- 90
A + F +M RD V WT +I GY+R F EA+ LF M ++ + T V +L
Sbjct: 88 ASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVGLFLRM---DVEPNAATFVSVLVACGR 144
Query: 91 -------------TFNNDIFVGI----ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
+F + VG+ AL+DMY KCG + A++VF ++ KD +WT++
Sbjct: 145 KGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMYVKCGCLPGAKQVFDELAEKDIVSWTSI 204
Query: 134 IVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
I GL AL++F M + I D + VLSAC
Sbjct: 205 ISGLVQCNCPKEALELFQDMQSSGIEPDGIILTSVLSACA 244
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 24/144 (16%)
Query: 50 WTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT------------------ 91
+ A++ GY +R + A ++R + D FT +L +
Sbjct: 2 FNALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVII 61
Query: 92 ---FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALD 148
F +I+V +L+ Y C A RVF +ML +D +WT +I G +G D A+
Sbjct: 62 KMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVG 121
Query: 149 MFSQMLRASIRLDEVTYVGVLSAC 172
+F LR + + T+V VL AC
Sbjct: 122 LF---LRMDVEPNAATFVSVLVAC 142
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 14/105 (13%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ T +V Y G ++++ Q F MP ++ + W A+++G + L LF EM
Sbjct: 267 DIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKNVLTWNALLNGLAMHGHAYKVLELFEEMV 326
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119
+R +E T + ILT C CG V + ++ F
Sbjct: 327 RVGMRPNEVTFLAILTA--------------CCHCGLVNEGRQYF 357
>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats.
Identities = 65/183 (35%), Positives = 102/183 (55%), Gaps = 21/183 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+++V T+++ Y ++D AR+ F ++ E V + AMI GY R +R EAL+LFRE
Sbjct: 153 SENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSRPNEALSLFRE 212
Query: 73 MQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGD 111
+Q N++ + T + +L++ FN + V ALIDMY KCG
Sbjct: 213 LQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTALIDMYAKCGS 272
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
++ A VF M +D W+AMI+ AI GHG A+ +F +M +A DE+T++G+L A
Sbjct: 273 LDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYA 332
Query: 172 CTH 174
C+H
Sbjct: 333 CSH 335
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 76/159 (47%), Gaps = 21/159 (13%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT--- 91
A F Q+P+ D VL+ M GY R + A TLF ++ S + D++T +L
Sbjct: 74 AHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACAS 133
Query: 92 ------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
+ +++V LI+MY C +++ A+RVF K+ T+ AM
Sbjct: 134 CKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAM 193
Query: 134 IVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
I G A + AL +F ++ +++ +VT + VLS+C
Sbjct: 194 ITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSC 232
>gi|125532120|gb|EAY78685.1| hypothetical protein OsI_33787 [Oryza sativa Indica Group]
Length = 493
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 100/202 (49%), Gaps = 28/202 (13%)
Query: 2 GFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVN 61
G A +F + + +SW ++ GY + AR+ FA+MP+RD V W+AMIDG ++
Sbjct: 115 GLARRLFDEIPRPNHVSWNALLDGYAKCRDLPAARRVFARMPQRDVVSWSAMIDGCVKCG 174
Query: 62 RFREALTLFREMQTSNIRRD-----EFTTVRILTT---------------------FNND 95
REAL +F M+ + R D + T V +L F +
Sbjct: 175 EHREALAVFEMMEATAARHDGVRANDVTMVSVLGACAHLGDLVRGRKMHRYLEEHGFPLN 234
Query: 96 IFVGIALIDMYCKCGDVEKAQRVFWKML--RKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
I + +L+DMY KCG + +A VF + D W A+I GLA+ G +L MF +M
Sbjct: 235 IRLATSLVDMYAKCGAIVEALEVFHAVPVESTDVLIWNAVIGGLAVHGMSRESLQMFQKM 294
Query: 154 LRASIRLDEVTYVGVLSACTHN 175
A + DE+TY+ +LSAC H
Sbjct: 295 EHAGVVPDEITYLCLLSACVHG 316
>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 111/200 (55%), Gaps = 26/200 (13%)
Query: 1 MGFALEIFGNMKNKDV----ISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDG 56
+G +++ +++ D+ + + +V+ Y G + ARQ F Q+ ++D W+A+I G
Sbjct: 196 LGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFG 255
Query: 57 YLRVNRFREALTLFREMQT-SNIRRDEFTTVRIL---------------------TTFNN 94
Y++ NR EAL LFRE+ SN+R +E T + ++ T +
Sbjct: 256 YVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGH 315
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML 154
+ + +LIDM+ KCGD++ A+R+F M KD +W +M+ GLA+ G G AL F M
Sbjct: 316 SVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQ 375
Query: 155 RASIRLDEVTYVGVLSACTH 174
++ DE+T++GVL+AC+H
Sbjct: 376 TTDLQPDEITFIGVLTACSH 395
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 99/185 (53%), Gaps = 22/185 (11%)
Query: 11 MKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 70
M + D+ TT+++ Y G + AR F +M R+ V+WT+MI GY++ + EAL L+
Sbjct: 109 MLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLY 168
Query: 71 REMQTSNIRRDEFTTVRILTTFN--NDIFVGI-------------------ALIDMYCKC 109
++M+ DE T +++ D+ VG+ AL++MY KC
Sbjct: 169 KKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKC 228
Query: 110 GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS-IRLDEVTYVGV 168
GD++ A++VF ++ KD + W+A+I G + AL +F ++ S +R +EVT + V
Sbjct: 229 GDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAV 288
Query: 169 LSACT 173
+SAC
Sbjct: 289 ISACA 293
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 87/178 (48%), Gaps = 19/178 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER-----DYVLWTAMID 55
+G+A +F + + DV++W +++ ++N A Q + +M ER D + +++
Sbjct: 28 VGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLK 87
Query: 56 GYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKA 115
G + F+ L ++ + ++D+++ L++MY CGD++ A
Sbjct: 88 GCALLLEFKVGKVLHGQV--------------VKYMLHSDLYIETTLLNMYAACGDLKSA 133
Query: 116 QRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+ +F +M ++K WT+MI G + + AL ++ +M DEVT ++SAC
Sbjct: 134 RFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACA 191
>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
Length = 771
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 93/175 (53%), Gaps = 21/175 (12%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
+++ Y G + AR+ F +P RD V WTAM+ GY ++ EA+ LFR MQ I+
Sbjct: 338 ALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKP 397
Query: 81 DEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVF 119
D+ T LT+ ++ D+++ AL+ MY KCG ++ A+ VF
Sbjct: 398 DKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVF 457
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+M ++ WTAMI G A G AL+ F QM + I+ D+VT+ VLSACTH
Sbjct: 458 NQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTH 512
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 90/174 (51%), Gaps = 21/174 (12%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
T++S Y G + AR+ F + +R+ V WTAMI+ ++ N+ EA + M+ + +
Sbjct: 136 TLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKP 195
Query: 81 DEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVEKAQRVF 119
D+ T V +L F N + VG +L+ MY KCGD+ KAQ +F
Sbjct: 196 DKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIF 255
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
K+ K+ TWT +I G A G D AL++ +M +A + +++TY +L CT
Sbjct: 256 DKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCT 309
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 94/175 (53%), Gaps = 21/175 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T++V Y G + A+ F ++PE++ V WT +I GY + + AL L +MQ + +
Sbjct: 236 TSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVA 295
Query: 80 RDEFTTVRIL---------------------TTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
++ T IL + + +I+V ALI MYCKCG +++A+++
Sbjct: 296 PNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKL 355
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
F + +D TWTAM+ G A G D A+D+F +M + I+ D++T+ L++C+
Sbjct: 356 FGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCS 410
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 67/153 (43%), Gaps = 25/153 (16%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV + +VS Y G +D AR F QM ER+ V WTAMI G + R REAL F +M+
Sbjct: 433 DVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMK 492
Query: 75 TSNIRRDEFTTVRILTTFNNDIFV--------------GI--------ALIDMYCKCGDV 112
I+ D+ T +L+ + V GI +D+ + G +
Sbjct: 493 KQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHL 552
Query: 113 EKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGD 144
E+A+ V M + W A++ I H D
Sbjct: 553 EEAENVILTMPFQPGPSVWGALLSACRI--HSD 583
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%)
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+ MY KCG + A+RVF + ++ +WTAMI A + M A + D
Sbjct: 137 LLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPD 196
Query: 162 EVTYVGVLSACTH 174
+VT+V +L+A T+
Sbjct: 197 KVTFVSLLNAFTN 209
>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Brachypodium distachyon]
Length = 610
Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats.
Identities = 58/193 (30%), Positives = 104/193 (53%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F ++ K+ + WT ++SGY+ G+ D A + F MP R WTA+I G++R
Sbjct: 159 ARKVFDSIVAKNSVMWTALISGYVLNGRSDEALELFRSMPGRTLFAWTALISGFVRSGES 218
Query: 64 REALTLFREMQTSNIRRD----------------------EFTTVRILTTFNNDIFVGIA 101
A+ LF +M+ + D + ++ + F++ + VG A
Sbjct: 219 VSAVKLFVDMRRDGVSIDDAFVLSSAIGGAADLAAHVLGRQLHSLTMRLGFSSSMIVGNA 278
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
++DMY KC D+ A+ VF ++ +D +WT M+VG A G + A ++ +M+ A ++ +
Sbjct: 279 VVDMYSKCSDIHSAREVFEEITGRDIISWTTMLVGEAQHGRAEEAFSLYDRMVLAGVKPN 338
Query: 162 EVTYVGVLSACTH 174
EVT+VG++ AC+H
Sbjct: 339 EVTFVGLIYACSH 351
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 22/154 (14%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN-IRR 80
+VS Y + R F + P RD L+++++ L L R M +++ +R
Sbjct: 44 LVSAYAKSRLLPDTRLLFDETPRRDLHLYSSLLAAVSHSESPELVLPLLRRMLSADALRP 103
Query: 81 DEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVF 119
D F I + +++D V +LIDMYCKCG + A++VF
Sbjct: 104 DHFVLASIASATARLRSLCLGKQLHGHFVASPYSSDDVVKSSLIDMYCKCGVPDDARKVF 163
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
++ K+ WTA+I G ++G D AL++F M
Sbjct: 164 DSIVAKNSVMWTALISGYVLNGRSDEALELFRSM 197
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 26/167 (15%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ +I +V Y + AR+ F ++ RD + WT M+ G + R EA +L+
Sbjct: 270 SSSMIVGNAVVDMYSKCSDIHSAREVFEEITGRDIISWTTMLVGEAQHGRAEEAFSLYDR 329
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT--- 129
M + ++ +E T FVG LI G V+K +++F M K ++
Sbjct: 330 MVLAGVKPNEVT------------FVG--LIYACSHAGLVQKGRQLFDSM--KGEYGINP 373
Query: 130 ----WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+T + L+ SGH A ++ + M DE T+ +LSAC
Sbjct: 374 RLQHYTCYLDLLSRSGHLAEAEELITTMPYVP---DEATWASLLSAC 417
>gi|413934702|gb|AFW69253.1| hypothetical protein ZEAMMB73_589560 [Zea mays]
Length = 664
Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats.
Identities = 66/196 (33%), Positives = 106/196 (54%), Gaps = 22/196 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A ++F M KDVISWT+IV Y + A + FA P +D V WTAM+ GY +
Sbjct: 209 VGAARKVFDEMLVKDVISWTSIVVAYSRIRDMGSAEEVFALCPVKDMVAWTAMVTGYAQN 268
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
+AL F +M + + DE + ++ ++ VG
Sbjct: 269 AMPVKALEAFEQMAVAGMPIDEVSLTGAISACAQLGAVKRAAWVQEIAERNGLGRNVVVG 328
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML-RASI 158
L+DMY KCG +++A++VF M K+ +T+++MIVGLA G + + +F+ M+ RA +
Sbjct: 329 SGLVDMYAKCGLIDEARKVFEGMHDKNVYTYSSMIVGLASHGRANDVIALFNDMVRRADV 388
Query: 159 RLDEVTYVGVLSACTH 174
+ VT++GVL+AC+H
Sbjct: 389 EPNHVTFIGVLTACSH 404
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 51/118 (43%), Gaps = 31/118 (26%)
Query: 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT------------------ 129
+L F+ FV +LI Y CGDV A++VF +ML KD +
Sbjct: 185 LLGGFDKHRFVENSLISAYVACGDVGAARKVFDEMLVKDVISWTSIVVAYSRIRDMGSAE 244
Query: 130 -------------WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
WTAM+ G A + AL+ F QM A + +DEV+ G +SAC
Sbjct: 245 EVFALCPVKDMVAWTAMVTGYAQNAMPVKALEAFEQMAVAGMPIDEVSLTGAISACAQ 302
>gi|255567935|ref|XP_002524945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535780|gb|EEF37442.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 417
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F + K ++S T +++ + G V AR F + +RD V W MIDGY++
Sbjct: 182 ARNLFDEIPEKSLVSSTAMITCFAKHGMVKEARVLFDGLEDRDLVCWNVMIDGYVQHGLA 241
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTF-----------------NNDI----FVGIAL 102
E L LFR+M +R E T + +L+ NN I VG AL
Sbjct: 242 NEGLVLFRQMLKDRVRPSEVTVLAVLSACGQIGALESGRWVHSYIQNNGIEINAHVGSAL 301
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG++E A+ VF ++ KD W +M+ G A G AL +F++M + +
Sbjct: 302 IDMYSKCGNLEDARLVFERIKYKDVVVWNSMVTGYATHGFSQDALQLFNEMCGLGYQPTD 361
Query: 163 VTYVGVLSACTH 174
+T++GVLSAC H
Sbjct: 362 ITFIGVLSACGH 373
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 86/211 (40%), Gaps = 49/211 (23%)
Query: 10 NMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 69
N+ + ++S+ + Y + G ++ + F Q + +T++I + +AL
Sbjct: 61 NLHHHPILSFK-LQRSYSSLGHLNHSLTLFNQTQNPNVFFYTSIIHAHTFHKLHYQALLF 119
Query: 70 FREMQTSNIRRDEFTTVRILTT-----------------FNNDIFVGIALIDMYCKCGDV 112
+ +M T + + FT IL + ++D++V L+D+Y + GD
Sbjct: 120 YAQMLTQKVTPNAFTFSSILKSCPLEFAQIIHAQAIKFGLDSDLYVRTCLVDVYARGGDF 179
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISG-----------------------------HG 143
A+ +F ++ K + TAMI A G HG
Sbjct: 180 VSARNLFDEIPEKSLVSSTAMITCFAKHGMVKEARVLFDGLEDRDLVCWNVMIDGYVQHG 239
Query: 144 --DTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+ L +F QML+ +R EVT + VLSAC
Sbjct: 240 LANEGLVLFRQMLKDRVRPSEVTVLAVLSAC 270
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+ ++ Y G ++ AR F ++ +D V+W +M+ GY ++AL LF EM +
Sbjct: 299 SALIDMYSKCGNLEDARLVFERIKYKDVVVWNSMVTGYATHGFSQDALQLFNEMCGLGYQ 358
Query: 80 RDEFTTVRILTTFNNDIFVG 99
+ T + +L+ + VG
Sbjct: 359 PTDITFIGVLSACGHAGLVG 378
>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
Length = 629
Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats.
Identities = 62/182 (34%), Positives = 97/182 (53%), Gaps = 22/182 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
+V+ W ++ GY+ G + +R+ F MP + V W MI G + F+EA+ +F +MQ
Sbjct: 189 NVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQ 248
Query: 75 TSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVE 113
++ + T V +L + D +G ALIDMY KCG ++
Sbjct: 249 LGDVPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSID 308
Query: 114 KAQRVFWKML-RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
KA +VF + +K+ TW+A+I GLA+ G ALD F +M +A + +V Y+GVLSAC
Sbjct: 309 KAVQVFEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSAC 368
Query: 173 TH 174
+H
Sbjct: 369 SH 370
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 46/201 (22%), Positives = 80/201 (39%), Gaps = 30/201 (14%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDI-------ARQYFAQM-----PERDYVLW 50
+A + F + + + SW TI+ + D+ A YF+ M E + +
Sbjct: 67 YARKFFSQIHHPNCFSWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTF 126
Query: 51 TAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT---VRIL---------------TTF 92
++ ++ R E L + + DEF VR+ T
Sbjct: 127 PCVLKACAKLARIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRL 186
Query: 93 NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
++ + +ID Y + GD+ ++ +F M K +W MI G A +GH A++MF
Sbjct: 187 EGNVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHD 246
Query: 153 MLRASIRLDEVTYVGVLSACT 173
M + + VT V VL A +
Sbjct: 247 MQLGDVPPNYVTLVSVLPAVS 267
>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Cucumis sativus]
Length = 667
Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats.
Identities = 61/192 (31%), Positives = 102/192 (53%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E++ N+ K V+ T +++GY+ G+V++A + F +M ++ V W +MI GY+ R
Sbjct: 217 AEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRA 276
Query: 64 REALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIAL 102
+ L +F+ M S +R + + +L + + D +L
Sbjct: 277 EDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSL 336
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I MYCKCGD++ A ++F +M RKD +W AMI G A G G AL +F +M +++ D
Sbjct: 337 ISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDW 396
Query: 163 VTYVGVLSACTH 174
+T+V V+ AC H
Sbjct: 397 ITFVAVILACNH 408
Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 18/171 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
AL F M KD+ SW T++SG+ GQ+ A F+ MPE++ V W+AMI GY+
Sbjct: 155 ALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDL 214
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
A L++ + + + V A++ Y K G VE A+R+F +M
Sbjct: 215 EAAEELYKNVGMKS------------------VVVETAMLTGYMKFGKVELAERIFQRMA 256
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
K+ TW +MI G + + L +F M+ + +R + ++ VL C++
Sbjct: 257 VKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSN 307
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 51/90 (56%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+KD + T+++S Y G +D A + F +MP +D + W AMI GY + R+AL LF +
Sbjct: 327 SKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDK 386
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIAL 102
M+ ++ D T V ++ N+ FV + +
Sbjct: 387 MRNGTMKPDWITFVAVILACNHAGFVDLGV 416
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 19/140 (13%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV-NRFREALTLFREM 73
DV+S ++ ++ ++ AR F +M R V W M+ GY +V + +EA LF ++
Sbjct: 72 DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131
Query: 74 QTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
+ + I L+ Y + VE A F KM KD +W +
Sbjct: 132 PEP-----------------DSVSYNIMLV-CYLRSYGVEAALAFFNKMPVKDIASWNTL 173
Query: 134 IVGLAISGHGDTALDMFSQM 153
I G A +G A D+FS M
Sbjct: 174 ISGFAQNGQMQKAFDLFSVM 193
Score = 40.4 bits (93), Expect = 0.30, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 41/110 (37%), Gaps = 40/110 (36%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQ-------------------------------- 31
A ++F M KDVISW ++SGY G
Sbjct: 349 AWKLFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNH 408
Query: 32 ---VDIARQYFAQMP-----ERDYVLWTAMIDGYLRVNRFREALTLFREM 73
VD+ QYF M E V +T +ID R R EA++L +EM
Sbjct: 409 AGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEM 458
>gi|357140545|ref|XP_003571826.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Brachypodium distachyon]
Length = 489
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 101/200 (50%), Gaps = 27/200 (13%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A +F + + +SW ++ GY + AR+ F +MP RD V W+AMIDG ++
Sbjct: 114 LARRLFDEIPRPNPVSWNALLDGYAKCRDLSAAREVFDRMPHRDVVSWSAMIDGCVKCGE 173
Query: 63 FREALTLFREMQTS----NIRRDEFTTVRILTT---------------------FNNDIF 97
+REAL LF M+ + +R ++ T + +L F ++
Sbjct: 174 YREALALFEMMEAAATGHGVRANDVTMISMLGACAHLGDLRRGRQMHRYLQERGFLLNLR 233
Query: 98 VGIALIDMYCKCGDVEKAQRVFW--KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155
+ +L+DMY KCG + +A VF + D W AMI GLA+ G G +++F +M
Sbjct: 234 LATSLVDMYAKCGAISEALEVFRAVPVASTDVLMWNAMIGGLAVHGMGMETVELFQEMQH 293
Query: 156 ASIRLDEVTYVGVLSACTHN 175
+ + DE+TY+G+LSAC H
Sbjct: 294 SGVVPDEITYLGLLSACVHG 313
>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 643
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 103/190 (54%), Gaps = 22/190 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M +++ SW +++GY G++++AR+ F +MP +D V W+ MI G+ F EA
Sbjct: 194 MFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEA 253
Query: 67 LTLFREMQTSNIRRDEFTTV---------------RILTTFNND------IFVGIALIDM 105
FRE+Q +R +E + +IL F + V AL+D
Sbjct: 254 FGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDT 313
Query: 106 YCKCGDVEKAQRVFWKMLRKDKF-TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVT 164
Y KCG+V A+ VF +M K +WT+MI GLA+ G+G+ A+ +F +M + IR D +
Sbjct: 314 YSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIA 373
Query: 165 YVGVLSACTH 174
++ +L AC+H
Sbjct: 374 FISILYACSH 383
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 18/154 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
TT+VS Y G V A++ F +M E + V W A++ R + A +F M N
Sbjct: 145 TTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMMFNRMPFRN-- 202
Query: 80 RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAI 139
LT++N ++ Y K G++E A+++F +M KD +W+ MIVG A
Sbjct: 203 ---------LTSWN-------VMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAH 246
Query: 140 SGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+G A F ++ + +R +EV+ G LSAC
Sbjct: 247 NGFFYEAFGFFRELQQVGMRPNEVSLTGALSACA 280
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 57/144 (39%), Gaps = 22/144 (15%)
Query: 32 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS-NIRRDEFTTVRILT 90
+D AR+ F P D + +I G + + +L F EM+ D F+ +L
Sbjct: 55 LDYARRLFLHFPNPDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLK 114
Query: 91 T---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT 129
+ +FVG L+ MY +CG V A++VF +M +
Sbjct: 115 AAASYRSLESGIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVA 174
Query: 130 WTAMIVGLAISGHGDTALDMFSQM 153
W A++ G A MF++M
Sbjct: 175 WNAVVTACFRCGDVKGADMMFNRM 198
>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
Length = 645
Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats.
Identities = 63/182 (34%), Positives = 95/182 (52%), Gaps = 21/182 (11%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
+ V T V Y+ G++ AR+ F +M ++D V W AM+ GY REAL LF M
Sbjct: 205 QSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAM 264
Query: 74 QTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDV 112
Q +R D + L+ F ++ +G ALIDMY KCG
Sbjct: 265 QAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGST 324
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+A VF +M +KD W AMI+GL ++GH TA + QM ++ ++L++ T++G+L +C
Sbjct: 325 AEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSC 384
Query: 173 TH 174
TH
Sbjct: 385 TH 386
Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats.
Identities = 61/175 (34%), Positives = 86/175 (49%), Gaps = 21/175 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T++++ Y G + A++ F +MP V WTA+I Y+ REA+ + R + +R
Sbjct: 110 TSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMR 169
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
D FT VR+LT +FV A +D+Y KCG++ KA+ V
Sbjct: 170 PDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREV 229
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
F KM KD W AM+ G A +GH ALD+F M +R D G LSACT
Sbjct: 230 FDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACT 284
>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 692
Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats.
Identities = 63/182 (34%), Positives = 95/182 (52%), Gaps = 21/182 (11%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
+ V T V Y+ G++ AR+ F +M ++D V W AM+ GY REAL LF M
Sbjct: 252 QSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAM 311
Query: 74 QTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDV 112
Q +R D + L+ F ++ +G ALIDMY KCG
Sbjct: 312 QAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGST 371
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+A VF +M +KD W AMI+GL ++GH TA + QM ++ ++L++ T++G+L +C
Sbjct: 372 AEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSC 431
Query: 173 TH 174
TH
Sbjct: 432 TH 433
Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats.
Identities = 61/175 (34%), Positives = 86/175 (49%), Gaps = 21/175 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T++++ Y G + A++ F +MP V WTA+I Y+ REA+ + R + +R
Sbjct: 157 TSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMR 216
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
D FT VR+LT +FV A +D+Y KCG++ KA+ V
Sbjct: 217 PDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREV 276
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
F KM KD W AM+ G A +GH ALD+F M +R D G LSACT
Sbjct: 277 FDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACT 331
>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats.
Identities = 62/178 (34%), Positives = 97/178 (54%), Gaps = 23/178 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+ ++ Y G + AR+ F M ++D V W AMI GY + EA+ LF++M+ S+
Sbjct: 267 SALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTA 326
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
D+ T + IL+ F +D++VG AL+DMY KCG ++ A RV
Sbjct: 327 PDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRV 386
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR--ASIRLDEVTYVGVLSACTH 174
F+ M +K++ +W AMI LA G AL +F M+ ++ +++T+VGVLSAC H
Sbjct: 387 FYGMPKKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVH 444
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 59/173 (34%), Positives = 94/173 (54%), Gaps = 21/173 (12%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
++++ Y G++ AR+ F ++ ++D V W +MI GY ++ EA+ LFREM + +
Sbjct: 167 SLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQP 226
Query: 81 DEFTTVRIL---------------------TTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119
+E + V +L + F+G ALI MY KCGD+ A+R+F
Sbjct: 227 NEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIF 286
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
M +KDK TW AMI G A +G + A+ +F M +S D++T +G+LSAC
Sbjct: 287 DSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSAC 339
Score = 60.1 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 48/81 (59%)
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
+ D V +LI MY +CG + A++VF ++ +KD +W +MI G + H A+ +F
Sbjct: 158 LDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFR 217
Query: 152 QMLRASIRLDEVTYVGVLSAC 172
+M+ A + +E++ V VL AC
Sbjct: 218 EMMEAGFQPNEMSLVSVLGAC 238
>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
[Vitis vinifera]
gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
Length = 618
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 96/174 (55%), Gaps = 21/174 (12%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
++++ Y G++ AR+ F ++ E+D V W +MI GY R+ +A+ LF EM+ +
Sbjct: 166 SLITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEP 225
Query: 81 DEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVEKAQRVF 119
DE T V IL + + FVG ALI MY KCGD+ A+RVF
Sbjct: 226 DEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRVF 285
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+M++KD TW AMI G A +G D A+ +FS M + + D++T VGVLSAC
Sbjct: 286 DRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKITLVGVLSACA 339
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 95/178 (53%), Gaps = 23/178 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+ ++ Y G + AR+ F +M ++D V W AMI GY + EA+ LF M+ S +
Sbjct: 266 SALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVN 325
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
D+ T V +L+ NDI+V ALIDMY KCG ++ A RV
Sbjct: 326 PDKITLVGVLSACASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDALRV 385
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR--ASIRLDEVTYVGVLSACTH 174
F M +K++ +W AMI LA G +L +F +M + ++R ++++++GVLSAC H
Sbjct: 386 FEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVH 443
>gi|297599966|ref|NP_001048246.2| Os02g0769900 [Oryza sativa Japonica Group]
gi|46805413|dbj|BAD16915.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255671273|dbj|BAF10160.2| Os02g0769900 [Oryza sativa Japonica Group]
Length = 438
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 99/194 (51%), Gaps = 21/194 (10%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
AL++F M + +++ T++SG + G V A + F MP D V WTA+IDG ++ R
Sbjct: 68 LALQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGR 127
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIA 101
EA+ FR M + D T + +++ ++ + +
Sbjct: 128 HDEAIDCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANS 187
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMY +CG VE A++VF M ++ +W +MIVG A +G A++ F M R + D
Sbjct: 188 LIDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPD 247
Query: 162 EVTYVGVLSACTHN 175
VT+ GVL+AC+H
Sbjct: 248 AVTFTGVLTACSHG 261
>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 687
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 98/176 (55%), Gaps = 21/176 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
I+ Y ++ A++ F ++ E+D + WT+M+ G + F+EAL LF++MQ + I
Sbjct: 252 NAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIE 311
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
DE T V +L+ N D+ + AL+DMY KCG ++ A +V
Sbjct: 312 LDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQV 371
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
F +M ++ FTW A+I GLA+ GHG+ A+ +F QM + D+VT++ +L AC+H
Sbjct: 372 FRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSH 427
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 93/193 (48%), Gaps = 22/193 (11%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
F E+ N D+ ++ Y N G A F + RD V W MI+ +L
Sbjct: 133 FHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGL 192
Query: 63 FREALTLFREM-QTSNIRRDEFTTVRILTT---------------------FNNDIFVGI 100
+A L EM + N+R DE T V ++ + ++ V
Sbjct: 193 SEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNN 252
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
A++DMYCKC D+E AQ VF ++ KD +WT+M+ GLA SG+ AL +F +M I L
Sbjct: 253 AILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIEL 312
Query: 161 DEVTYVGVLSACT 173
DE+T VGVLSAC
Sbjct: 313 DEITLVGVLSACA 325
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 72/168 (42%), Gaps = 22/168 (13%)
Query: 28 NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVR 87
+ G ++ AR+ F QM D + MI GY R EA++L+ M + D +T
Sbjct: 57 HSGDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPF 116
Query: 88 ILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKD 126
+L F +D+FV ALI Y CG A VF + +D
Sbjct: 117 VLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRD 176
Query: 127 KFTWTAMIVGLAISGHGDTALDMFSQMLRA-SIRLDEVTYVGVLSACT 173
TW MI G + A D+ +M + ++R DEVT V ++ AC
Sbjct: 177 VVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACA 224
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 23/157 (14%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
N D++ T +V Y G +D+A Q F +M R+ W A+I G +A++LF +
Sbjct: 346 NCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQ 405
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFV--GIAL--------------------IDMYCKCG 110
M+ + D+ T + +L ++ V G+A+ +D+ C+
Sbjct: 406 MEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRAR 465
Query: 111 DVEKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTA 146
V+ A M ++ + W ++ GH D A
Sbjct: 466 KVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLA 502
>gi|413953302|gb|AFW85951.1| hypothetical protein ZEAMMB73_518426 [Zea mays]
Length = 620
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 105/193 (54%), Gaps = 21/193 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
AL++F M ++D+ S +++G+I + AR+ F +MPER+ V WT M++GYL+ +
Sbjct: 246 ALDLFTKMPHRDIASCNIMITGFIQNKDLKRARKLFDEMPERNVVTWTTMMNGYLKGKQS 305
Query: 64 REALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIAL 102
+L LFR M S IR ++ T + L T F D FVG AL
Sbjct: 306 ELSLGLFRGMLMSGIRPNQVTFLGALDACSDLATLCEGKQVHQMICKTAFQVDTFVGSAL 365
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+++Y KCG+V A+++F KD +W +I A G G A+ ++ +M R ++
Sbjct: 366 MNVYAKCGEVGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAIHLYEKMQGNGYRPND 425
Query: 163 VTYVGVLSACTHN 175
VTYV +LSAC+H+
Sbjct: 426 VTYVVLLSACSHS 438
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 92/170 (54%), Gaps = 18/170 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+FG M +DV++WTT+V G G VD AR F MPER+ V W AMI GY R +R
Sbjct: 184 ARELFGRMPERDVMAWTTMVDGVARSGNVDEARLLFDSMPERNVVSWNAMISGYTRNHRL 243
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
EAL LF +M + DI +I + + D+++A+++F +M
Sbjct: 244 DEALDLFTKMP------------------HRDIASCNIMITGFIQNKDLKRARKLFDEMP 285
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
++ TWT M+ G + +L +F ML + IR ++VT++G L AC+
Sbjct: 286 ERNVVTWTTMMNGYLKGKQSELSLGLFRGMLMSGIRPNQVTFLGALDACS 335
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 22/162 (13%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
++V++WT ++SGY G VD A F +MP+R+ V W M++ Y R +A LF M
Sbjct: 101 RNVVTWTALLSGYARAGLVDEAEVLFQRMPQRNVVSWNTMLEAYAVAGRAGDACALFDRM 160
Query: 74 QTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
VR ++N L+ M + G V+KA+ +F +M +D WT M
Sbjct: 161 -----------PVRDAGSWN-------ILLAMLVRSGSVDKARELFGRMPERDVMAWTTM 202
Query: 134 IVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
+ G+A SG+ D A +F M ++ V++ ++S T N
Sbjct: 203 VDGVARSGNVDEARLLFDSMPERNV----VSWNAMISGYTRN 240
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 17/124 (13%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G+V AR+ F PERD V WTA++ Y R R+A +LF S+ RR+ T
Sbjct: 54 GRVWDARKLFDGTPERDVVSWTALVSAYARRGMLRDARSLF---DRSDARRNVVTWT--- 107
Query: 90 TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDM 149
AL+ Y + G V++A+ +F +M +++ +W M+ A++G A +
Sbjct: 108 -----------ALLSGYARAGLVDEAEVLFQRMPQRNVVSWNTMLEAYAVAGRAGDACAL 156
Query: 150 FSQM 153
F +M
Sbjct: 157 FDRM 160
Score = 40.0 bits (92), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 65/155 (41%), Gaps = 25/155 (16%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDY----VLWTAMIDG 56
+G A ++F + KD+ISW I++ Y + G A + +M Y V + ++
Sbjct: 375 VGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAIHLYEKMQGNGYRPNDVTYVVLLSA 434
Query: 57 YLRVNRFREALTLFREM--QTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEK 114
E L +F M S RDE T LID+ + G ++
Sbjct: 435 CSHSGLVDEGLKIFESMVNDRSIAVRDEHYTC---------------LIDLCSRAGRLDD 479
Query: 115 AQRV--FWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
A+R+ + K+ W+A++ G + HG+ ++
Sbjct: 480 AKRLIHYLKIKPASGSVWSALLGG--CNAHGNESI 512
>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
Length = 644
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 65/191 (34%), Positives = 98/191 (51%), Gaps = 27/191 (14%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 67
F M K+ +SWT+++ R +D AR +F Q+PE+ + W AMI Y++ RF EAL
Sbjct: 269 FDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEAL 328
Query: 68 TLFREMQTSNIRRDEFTTVRILT--------------------TFNNDIFVGIA----LI 103
L+ M+ + DEFT +L+ F+N G+A L+
Sbjct: 329 DLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFHNP---GVALFNSLL 385
Query: 104 DMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEV 163
DMY +CG V+ A +F +M K+ +W A+I LA+ G AL F M+ + DE+
Sbjct: 386 DMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRSMVFDAFPPDEI 445
Query: 164 TYVGVLSACTH 174
T+V +LSAC H
Sbjct: 446 TFVALLSACNH 456
Score = 87.0 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 55/180 (30%), Positives = 85/180 (47%), Gaps = 32/180 (17%)
Query: 1 MGFALEIF-GNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR 59
+GF ++F GN ++ Y + G + +R++F +M +R+ V W +MI+GY +
Sbjct: 139 LGFVGQVFVGN----------ALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQ 188
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFV 98
REA +LF M+ + DEFT V +L + D+ +
Sbjct: 189 AGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLIL 248
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
AL+DMY KCGD+ A F M K+ +WT+M+ LA D A D F Q+ SI
Sbjct: 249 ANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSI 308
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 21/165 (12%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G V ARQ F ++P+ D ++ ++I Y + +EAL L R M I +EFT +L
Sbjct: 58 GGVWYARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLL 117
Query: 90 TT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
F +FVG AL+ Y G + ++R F +M+ ++
Sbjct: 118 KACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVV 177
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+W +MI G A +G+ A +F M R + DE T V +L AC+
Sbjct: 178 SWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACS 222
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 71/168 (42%), Gaps = 23/168 (13%)
Query: 10 NMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 69
N N V + +++ Y GQVD A F++MP ++ + W A+I R ++AL
Sbjct: 372 NFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMF 431
Query: 70 FREMQTSNIRRDEFTTVRILTTFNN------------------DIFVGI----ALIDMYC 107
FR M DE T V +L+ N+ ++ G+ ++D+
Sbjct: 432 FRSMVFDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLG 491
Query: 108 KCGDVEKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQML 154
+ G + KA + M +R D W A++ I GH + Q+L
Sbjct: 492 RGGQLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQLL 539
>gi|46805412|dbj|BAD16914.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|215704291|dbj|BAG93131.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 527
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 62/193 (32%), Positives = 99/193 (51%), Gaps = 21/193 (10%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
AL++F M + +++ T++SG + G V A + F MP D V WTA+IDG ++ R
Sbjct: 157 LALQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGR 216
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIA 101
EA+ FR M + D T + +++ ++ + +
Sbjct: 217 HDEAIDCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANS 276
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMY +CG VE A++VF M ++ +W +MIVG A +G A++ F M R + D
Sbjct: 277 LIDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPD 336
Query: 162 EVTYVGVLSACTH 174
VT+ GVL+AC+H
Sbjct: 337 AVTFTGVLTACSH 349
>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
Length = 605
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 104/197 (52%), Gaps = 23/197 (11%)
Query: 1 MGFALEIFGNMKNK-DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR 59
MG A +F N K D I WT +VSGY++ G V A +YF MP R+ V W A++ GY++
Sbjct: 150 MGAAENLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVK 209
Query: 60 VNRFREALTLFREM-QTSNIRRDEFTTVRILTTFNN---------------------DIF 97
+R +AL +F+ M + + ++ + T +L +N I
Sbjct: 210 NSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLGRSIT 269
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
VG +L+ MYCKCGD++ A ++F +M KD W AMI G A G G A+ +F +M
Sbjct: 270 VGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEG 329
Query: 158 IRLDEVTYVGVLSACTH 174
+ D +T + VL+AC H
Sbjct: 330 VVPDWITLLAVLTACIH 346
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 83/186 (44%), Gaps = 15/186 (8%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F ++ + D +S+ T++S + G +D A + F+ MP RD W M+ G +
Sbjct: 60 ARRLFDSIPHPDAVSYNTLLSCHFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAI 119
Query: 64 REALTLFREMQTSN-IRRDEFTTVRILTT--------FNN-----DIFVGIALIDMYCKC 109
EA +FR M N + + R + F N D + A++ Y
Sbjct: 120 EEAEAMFRAMPARNAVSWNAMVAARASSGDMGAAENLFRNAPEKTDAILWTAMVSGYMDT 179
Query: 110 GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR-ASIRLDEVTYVGV 168
G+V+KA F M ++ +W A++ G + AL +F M+ A ++ + T V
Sbjct: 180 GNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSV 239
Query: 169 LSACTH 174
L C++
Sbjct: 240 LLGCSN 245
>gi|297833170|ref|XP_002884467.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330307|gb|EFH60726.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 657
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 68/197 (34%), Positives = 102/197 (51%), Gaps = 23/197 (11%)
Query: 2 GFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVN 61
G A F +K KD+ SW T+V G++ G ++ A+ F QMP+RD V W +++ Y +
Sbjct: 285 GLAKRAFDALKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPQRDLVSWNSLLFCYSKKG 344
Query: 62 RFREAL-TLFREMQ-TSNIRRDEFTTVRILTTFNN---------------------DIFV 98
+ A+ LF EM ++ D T V +++ N D F+
Sbjct: 345 CDQRAVRELFYEMLIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLMIRLQLEGDAFL 404
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
ALIDMYCKCG +E+A VF KD WT+MI G A G+G AL +F +M +
Sbjct: 405 SSALIDMYCKCGLIERAFMVFKTATEKDVPLWTSMITGFAFHGYGQQALQLFKRMQEEDV 464
Query: 159 RLDEVTYVGVLSACTHN 175
++VT + VL+AC+H+
Sbjct: 465 TPNKVTLLAVLTACSHS 481
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 23/158 (14%)
Query: 19 WTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 78
W ++V Y+ G + A + FA MP+ D + MI GY + EAL L+ +M + I
Sbjct: 168 WNSLVKFYMELGSLGFAEKVFAIMPQPDVSSFNVMIVGYAKQGFGLEALELYYKMVSDGI 227
Query: 79 RRDEFTTVRILT-----------------------TFNNDIFVGIALIDMYCKCGDVEKA 115
DE+T + +L +++++ + AL+DMY KC + A
Sbjct: 228 EPDEYTLLGLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILRNALLDMYFKCKESGLA 287
Query: 116 QRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+R F + +KD +W M+VG G + A +F QM
Sbjct: 288 KRAFDALKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQM 325
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 42/74 (56%)
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
+L+ Y + G + A++VF M + D ++ MIVG A G G AL+++ +M+ I
Sbjct: 170 SLVKFYMELGSLGFAEKVFAIMPQPDVSSFNVMIVGYAKQGFGLEALELYYKMVSDGIEP 229
Query: 161 DEVTYVGVLSACTH 174
DE T +G+L C H
Sbjct: 230 DEYTLLGLLVCCGH 243
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 38/165 (23%), Positives = 75/165 (45%), Gaps = 24/165 (14%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D + ++ Y G ++ A F E+D LWT+MI G+ ++AL LF+ MQ
Sbjct: 401 DAFLSSALIDMYCKCGLIERAFMVFKTATEKDVPLWTSMITGFAFHGYGQQALQLFKRMQ 460
Query: 75 TSNIRRDEFTTVRILTTFNNDIFV--GI--------------------ALIDMYCKCGDV 112
++ ++ T + +LT ++ V G+ +L+D+ C+ G +
Sbjct: 461 EEDVTPNKVTLLAVLTACSHSGLVEEGLHVFYHMKEKFGFHPETEHYGSLVDLLCRAGRL 520
Query: 113 EKAQRVFW-KM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155
E+A+ + KM +R + W +++ +TA S++L+
Sbjct: 521 EEAKDIVQNKMPMRPSQSMWGSILSACREGEDIETAELALSELLK 565
>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
[Vitis vinifera]
Length = 781
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 61/176 (34%), Positives = 94/176 (53%), Gaps = 21/176 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T + + Y +++ AR F + E+ W AMI GY + +A++LF+EMQ +R
Sbjct: 347 TALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVR 406
Query: 80 RDEFTTVRILT---------------------TFNNDIFVGIALIDMYCKCGDVEKAQRV 118
+ T IL+ +F ++IFV ALIDMY KCG + +AQR+
Sbjct: 407 PNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRL 466
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
F M K+ TW AMI G + G+G AL++F++ML + + VT++ VL AC+H
Sbjct: 467 FSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSH 522
Score = 75.5 bits (184), Expect = 8e-12, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 86/176 (48%), Gaps = 21/176 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ + IV+ Y +V AR+ F M ERD VLW M+ G ++ + F EA+ +F +M
Sbjct: 140 DLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMV 199
Query: 75 TSNIRRDEFTTVRIL---------------------TTFNNDIFVGIALIDMYCKCGDVE 113
I D T +L F++ +V L +Y KCG++E
Sbjct: 200 KGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIE 259
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVL 169
A+ +F ++ + D ++ AMI G + ++++ +F ++L + +++ + VG++
Sbjct: 260 TARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLI 315
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 21/170 (12%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT 85
Y G+++ AR F Q+ + D V + AMI GY N ++ LF+E+ S + + +
Sbjct: 252 YSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSI 311
Query: 86 VRILTTF---------------------NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124
V ++ F ++ V AL +Y + ++E A+ +F +
Sbjct: 312 VGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSE 371
Query: 125 KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
K +W AMI G A +G + A+ +F +M + +R + VT +LSAC
Sbjct: 372 KSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQ 421
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 19/183 (10%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE 65
+I N + D+++ T + + +D A F+ +P D L+ +I + N
Sbjct: 32 QIILNGLHNDLVTVTKLTHKLSHLKAIDQASLLFSTIPNPDLFLYNVLIRAFSLNNSPSS 91
Query: 66 ALTLFREMQTSN-IRRDEFT------------------TVRILTTFNNDIFVGIALIDMY 106
A++L+ ++ S + D FT I+ F +D+FVG A++ Y
Sbjct: 92 AVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHAHSIVAGFGSDLFVGSAIVACY 151
Query: 107 CKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYV 166
K V A++VF ML +D W M+ GL + D A+ +F M++ I D T
Sbjct: 152 FKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVA 211
Query: 167 GVL 169
VL
Sbjct: 212 AVL 214
>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 661
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 63/194 (32%), Positives = 103/194 (53%), Gaps = 22/194 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F +M KDV SWTT+V+ Y G ++ A + F MP R+ V W+ MI Y + N+
Sbjct: 297 AREVFDSMAVKDVYSWTTMVNAYAKCGDLESAARLFDDMPRRNAVSWSCMIAAYSQANQP 356
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT-------------FNNDIF---------VGIA 101
EA+ LF+ M + V +L+ ++N + +G A
Sbjct: 357 EEAVRLFKAMIEEGVEPINAGLVSVLSACAQLGCLDLGRWIYDNYVISGKAVLTVNLGNA 416
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
ID+Y KCGD + A ++F +M ++ +W +MI+ A+ G + L +F Q+ I D
Sbjct: 417 FIDVYAKCGDFDAASKLFAEMAERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCIVPD 476
Query: 162 EVTYVGVLSACTHN 175
E+T++G+LSAC+H+
Sbjct: 477 EITFLGLLSACSHS 490
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 48/196 (24%), Positives = 86/196 (43%), Gaps = 22/196 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP-----ERDYVLWTAMID 55
+ A +F M ++DV+SWTT+V GY RG D A + F +M + + V A++
Sbjct: 192 LAHARNLFDEMPDRDVVSWTTLVDGYARRGLADEAWRVFCRMVVAGGLQPNEVTLVAVVS 251
Query: 56 GYLRVNRFREALTLFREMQTSNIRRD---EFTTVRILTTFN--------------NDIFV 98
++ ++R + + R E + + F D++
Sbjct: 252 AMGQMGLLAFGRMVYRYVADGGVGRSVNLENALIDMFGKFGCAASAREVFDSMAVKDVYS 311
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
+++ Y KCGD+E A R+F M R++ +W+ MI + + + A+ +F M+ +
Sbjct: 312 WTTMVNAYAKCGDLESAARLFDDMPRRNAVSWSCMIAAYSQANQPEEAVRLFKAMIEEGV 371
Query: 159 RLDEVTYVGVLSACTH 174
V VLSAC
Sbjct: 372 EPINAGLVSVLSACAQ 387
Score = 44.3 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 96 IFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155
+ VG AL+ Y + A+ +F +M +D +WT ++ G A G D A +F +M+
Sbjct: 176 VLVGNALVHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGYARRGLADEAWRVFCRMVV 235
Query: 156 A-SIRLDEVTYVGVLSA 171
A ++ +EVT V V+SA
Sbjct: 236 AGGLQPNEVTLVAVVSA 252
>gi|302818558|ref|XP_002990952.1| hypothetical protein SELMODRAFT_132593 [Selaginella moellendorffii]
gi|300141283|gb|EFJ07996.1| hypothetical protein SELMODRAFT_132593 [Selaginella moellendorffii]
Length = 357
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 99/197 (50%), Gaps = 23/197 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A + M + D ISWTTI+SGY G++D AR+ F QMP+RD V W AMI GY +
Sbjct: 59 MQEARRLLARMPHPDPISWTTIISGYNKLGEIDCAREIFDQMPDRDTVAWNAMISGYCQS 118
Query: 61 NRFREALTLFREMQTSNI--------------------RRDEFTTVRILTTF--NNDIFV 98
R EAL LF+ M I R + V +L + +D
Sbjct: 119 ARPSEALDLFKLMIVEGINPVRETFVAAIDACAAVPAEREGKLVHVELLASGVRPDDAQA 178
Query: 99 GIALIDMYCKCGDVEKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
AL+ MY + G +E A+ +F M +D+ TWTAM+ A SGH AL +F M+
Sbjct: 179 HNALLSMYGRMGHLEVARDLFDAMESSRDRVTWTAMLAAYAQSGHLRDALGIFHAMVLHG 238
Query: 158 IRLDEVTYVGVLSACTH 174
D VT++ VL+AC H
Sbjct: 239 EAPDGVTFINVLAACAH 255
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 56/147 (38%), Gaps = 47/147 (31%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F + +KD SWTTI++ YI D+ REA
Sbjct: 1 MFDRIASKDSTSWTTIIAAYIGGSDDDL-----------------------------REA 31
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKD 126
LF +Q T+N +I Y + G +++A+R+ +M D
Sbjct: 32 RNLFDRVQDPEA-----------ATYN-------VIISAYAQKGQMQEARRLLARMPHPD 73
Query: 127 KFTWTAMIVGLAISGHGDTALDMFSQM 153
+WT +I G G D A ++F QM
Sbjct: 74 PISWTTIISGYNKLGEIDCAREIFDQM 100
>gi|223946989|gb|ACN27578.1| unknown [Zea mays]
gi|414586292|tpg|DAA36863.1| TPA: hypothetical protein ZEAMMB73_743648 [Zea mays]
Length = 545
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A + F M+ KDV+SW T++S + GQ+ AR+ F MP++ V WTA++ GY V F
Sbjct: 170 ARKAFDGMREKDVVSWNTLISAHARMGQMRRARELFYSMPDKTVVSWTALVSGYTAVGDF 229
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
A+ +FR MQ D+ + V +L +++ AL
Sbjct: 230 TGAVEVFRLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCSKHGMLGKVYICNAL 289
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR-ASIRLD 161
++MY KCG +E+A ++F M KD +W+ I GLA G A+ +F M R + +
Sbjct: 290 MEMYAKCGCIEEALQLFHGMSEKDVISWSTAIGGLAAHGRAREAVRLFEVMDREGRVMPN 349
Query: 162 EVTYVGVLSACTH 174
+T+VG+LSAC+H
Sbjct: 350 GITFVGLLSACSH 362
Score = 43.9 bits (102), Expect = 0.025, Method: Composition-based stats.
Identities = 40/164 (24%), Positives = 68/164 (41%), Gaps = 33/164 (20%)
Query: 39 FAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-------QTSNIR-RDEFTTVRIL- 89
FAQ+P + L AMI Y + + R+A+ ++ M T+ D FT +L
Sbjct: 65 FAQIPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPHPSTAGFSVGDRFTYPFLLK 124
Query: 90 -------TTFNNDIFVGIA-------------LIDMYCKCGDVEKAQRVFWKMLRKDKFT 129
+ + +A LI+MY +CGD+ A++ F M KD +
Sbjct: 125 ACGALAASRLGRQVHAHVARSGCESHAVVQNSLIEMYTRCGDLSTARKAFDGMREKDVVS 184
Query: 130 WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
W +I A G A ++F M ++ V++ ++S T
Sbjct: 185 WNTLISAHARMGQMRRARELFYSMPDKTV----VSWTALVSGYT 224
>gi|449440231|ref|XP_004137888.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
gi|449521725|ref|XP_004167880.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 521
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 101/191 (52%), Gaps = 23/191 (12%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+ +M + +SW T+++ YI + AR+ F +MPERD V W ++I GY+ V ++ A
Sbjct: 201 LLESMPQTNAVSWNTLLARYIRLNNLVAARKVFEEMPERDVVSWNSIISGYVNVKDYKGA 260
Query: 67 LTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDM 105
L LF M+ NIR E T + IL + + ++G A++DM
Sbjct: 261 LDLFHSMKQWNIRATEVTFISILGACAELGALEIGKKIHDSLKEKHYRIEGYLGNAIVDM 320
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR--ASIRLDEV 163
Y KCG++ A VF +M K W AMI+GLA+ GH + AL+MF M + + +
Sbjct: 321 YAKCGELGLALEVFNEMEMKPVSCWNAMIMGLAVHGHCERALEMFDSMKAEDGDHKPNRI 380
Query: 164 TYVGVLSACTH 174
T++ +L AC+H
Sbjct: 381 TFIALLIACSH 391
>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Vitis vinifera]
Length = 654
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 98/193 (50%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A IF + KD ISW T+++GY G ++IA +F MP RD V W ++I GY +
Sbjct: 284 AQSIFNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDMPCRDLVSWNSIIAGYAQKGDC 343
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
LF M NI D T + +++ D F+G A
Sbjct: 344 LMVQRLFENMVAENIWPDFVTIINLVSAAAEIGALHHGRWIHGWVVRMQMKIDAFLGSAF 403
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG +++A VF ++ KD WT MI G A G+G AL +F +M + + ++
Sbjct: 404 IDMYWKCGSIKRACMVFREVTEKDVTVWTTMITGFAFHGYGSKALQLFYEM-QEYVMPNQ 462
Query: 163 VTYVGVLSACTHN 175
VT+V VL+AC+H+
Sbjct: 463 VTFVAVLTACSHS 475
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 23/156 (14%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
T++ Y+ ++ +A Q F QM D V + MI GY + EAL EM ++
Sbjct: 167 TLMKIYLENEKMGLAYQVFQQMAAPDAVSFNIMIFGYAKKGHNIEALKFLHEMVGLGLKP 226
Query: 81 DEFTTVRILTTF-----------------------NNDIFVGIALIDMYCKCGDVEKAQR 117
DEFT + +L ++++ + AL+DMY KC ++ AQ
Sbjct: 227 DEFTMLGLLICCGRLGDAQLGKSVHAWIERRGLIKSSNLILNNALLDMYVKCKELRIAQS 286
Query: 118 VFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+F ++RKD +W MI G A G+ + A + F M
Sbjct: 287 IFNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDM 322
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+ +Y + + A +VF +M D ++ MI G A GH AL +M+ ++ D
Sbjct: 168 LMKIYLENEKMGLAYQVFQQMAAPDAVSFNIMIFGYAKKGHNIEALKFLHEMVGLGLKPD 227
Query: 162 EVTYVGVLSAC 172
E T +G+L C
Sbjct: 228 EFTMLGLLICC 238
>gi|357138593|ref|XP_003570875.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 664
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 96/192 (50%), Gaps = 25/192 (13%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
AL +F M +D++SW TI+ G++ +G + A +F MPE+D W +I G+ +
Sbjct: 310 ALRLFAEMPERDLVSWNTILQGHVQQGDMATANTWFRGMPEKDETSWNTLISGH----KD 365
Query: 64 REALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIAL 102
AL L EM +R DE T ++ T F +D V +L
Sbjct: 366 EGALALLSEMIRGGLRPDEATLSVVISICASLVALGYGKMVHLYAVKTGFEHDALVMSSL 425
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I MY KCG + +A +VF ++++D TW AMI A G AL +F++M + R D
Sbjct: 426 ISMYSKCGLIAEASQVFKLLVQRDTVTWNAMIATYAYHGMASEALKLFNKMTKDGFRPDH 485
Query: 163 VTYVGVLSACTH 174
T++ VLSAC H
Sbjct: 486 ATFLSVLSACAH 497
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 86/174 (49%), Gaps = 24/174 (13%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +F M KD ISWT ++ GY+ G VD + + F +P+RD V W M+ G+++
Sbjct: 245 MQVAQSLFDEMPQKDTISWTAVMRGYLQNGDVDASWKVFQDIPDRDVVAWNTMMGGFVQS 304
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
R +AL LF EM R L ++N ++ + + GD+ A F
Sbjct: 305 ERLDDALRLFAEMPE-----------RDLVSWNT-------ILQGHVQQGDMATANTWFR 346
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDT-ALDMFSQMLRASIRLDEVTYVGVLSACT 173
M KD+ +W + ISGH D AL + S+M+R +R DE T V+S C
Sbjct: 347 GMPEKDETSWNTL-----ISGHKDEGALALLSEMIRGGLRPDEATLSVVISICA 395
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 83/172 (48%), Gaps = 22/172 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F M +++V+SW ++SGY+ G V+ AR+ F MP R+ V W MI GY++ R
Sbjct: 124 ARELFDRMPDRNVVSWNAMMSGYLRNGMVERARELFDMMPSRNDVSWLTMISGYIKKRRL 183
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
REA LF + + + N AL+ Y ++ A+ +F +M
Sbjct: 184 REARELF-----------DLSPSHPTSVCN-------ALLSGYVALSCLKDAEELFGRMQ 225
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
R+D +W MI G A +G A +F +M + D +++ V+ N
Sbjct: 226 RRDPVSWNVMITGYARAGRMQVAQSLFDEMPQK----DTISWTAVMRGYLQN 273
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 18/139 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ W +++ ++ G+V AR+ F +MPER+ W MI G + +A +F M
Sbjct: 42 DIFQWNAVITAHLRAGRVAAARRVFDEMPERNVFTWNCMISGLVGNRMLADARRVFDAMP 101
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
N AL+ Y +CG V +A+ +F +M ++ +W AM+
Sbjct: 102 VRN------------------PVSWAALLTGYARCGRVAEARELFDRMPDRNVVSWNAMM 143
Query: 135 VGLAISGHGDTALDMFSQM 153
G +G + A ++F M
Sbjct: 144 SGYLRNGMVERARELFDMM 162
>gi|242038427|ref|XP_002466608.1| hypothetical protein SORBIDRAFT_01g010975 [Sorghum bicolor]
gi|241920462|gb|EER93606.1| hypothetical protein SORBIDRAFT_01g010975 [Sorghum bicolor]
Length = 752
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 63/192 (32%), Positives = 99/192 (51%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A IF ++ K+ + W +++SGY G++ A + F +MP R+ W MI GY RF
Sbjct: 438 AQRIFNSLPEKNTVCWNSLISGYSWNGKMVEAEELFKKMPARNAASWNTMISGYAENRRF 497
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
+AL F M S E T +L N +IF+G AL
Sbjct: 498 GDALNYFCAMLASGQIPGEITLSSVLLACANLCSLEMGKMVHAEIVKLGIEDNIFMGTAL 557
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
DMY K GD++ ++R+F++M K+ TWTAM+ GLA +G + ++ +F M+ I +E
Sbjct: 558 SDMYAKSGDLDSSRRMFYQMPEKNNITWTAMVQGLAENGFAEESILLFENMIANRIAPNE 617
Query: 163 VTYVGVLSACTH 174
T++ +L AC+H
Sbjct: 618 HTFLAILFACSH 629
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 21/171 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F +M+ +DV+SWT ++ Y G ++ AR+ MPER+ V W+ +I + +
Sbjct: 306 AHRVFDDMEVRDVVSWTALLDVYAELGDLEGARRVLDAMPERNEVSWSTLIARHEQKGDS 365
Query: 64 REALTLFREMQTSNIRRDE--FTTVRILTTFNNDIFVGIAL------------------- 102
EAL L+ +M R + F++V +D+ G +
Sbjct: 366 AEALKLYSQMLAEGCRPNISCFSSVLSACATLHDLRGGTRIHANALKMGFSSSLFVSSSL 425
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
IDMYCKC AQR+F + K+ W ++I G + +G A ++F +M
Sbjct: 426 IDMYCKCKQCTDAQRIFNSLPEKNTVCWNSLISGYSWNGKMVEAEELFKKM 476
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 60/222 (27%), Positives = 94/222 (42%), Gaps = 53/222 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M K V+S+TT+V + RG V A + + + P +TAMI G++R
Sbjct: 173 ARRLFDGMPEKSVVSYTTMVDALMKRGSVKDAVKLYERCPLYSVAFFTAMIAGFVRNELH 232
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT----------------------FNNDIFVGIA 101
++A +FR+M ++R + T + ++ F I V +
Sbjct: 233 KDAFPVFRKMLRCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAIKWNLFEKSIEVHNS 292
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLA----------------------- 138
LI +Y + GD A RVF M +D +WTA++ A
Sbjct: 293 LITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYAELGDLEGARRVLDAMPERNEVSW 352
Query: 139 ---ISGH---GDT--ALDMFSQMLRASIRLDEVTYVGVLSAC 172
I+ H GD+ AL ++SQML R + + VLSAC
Sbjct: 353 STLIARHEQKGDSAEALKLYSQMLAEGCRPNISCFSSVLSAC 394
>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Brachypodium distachyon]
Length = 617
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 65/197 (32%), Positives = 107/197 (54%), Gaps = 23/197 (11%)
Query: 1 MGFALEIFGNMKNKD-VISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR 59
M A E F + +K+ + WT +VSGY++ G V+ A Q+F MP R V W A++ GY++
Sbjct: 162 MCAAEECFEDAPDKENAVLWTAMVSGYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVK 221
Query: 60 VNRFREALTLFREM-QTSNIRRDEFTTVRILTTFNN---------------------DIF 97
+R +AL +F+ M + +++R +E T +L +N +
Sbjct: 222 NSRAEDALWVFKTMVRDADVRPNESTLSSVLLGCSNLSALGFGRQVHQWCTKLPLSRRVT 281
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
G +L+ MYCKCGD++ A ++F +M +D W AMI G A G G A+++F +M
Sbjct: 282 AGTSLVSMYCKCGDLDGACKLFSEMRIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQG 341
Query: 158 IRLDEVTYVGVLSACTH 174
+ + +T+V VL+AC H
Sbjct: 342 VEPNWITFVAVLTACIH 358
Score = 55.8 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 22/132 (16%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
++ V + T++VS Y G +D A + F++M RD + W AMI GY REA+ LF +
Sbjct: 277 SRRVTAGTSLVSMYCKCGDLDGACKLFSEMRIRDVIAWNAMISGYAHHGDGREAIELFEK 336
Query: 73 MQTSNIRRDEFTTVRILTT--------FNNDIF------VGI--------ALIDMYCKCG 110
M++ + + T V +LT F F GI ++D+ C+ G
Sbjct: 337 MKSQGVEPNWITFVAVLTACIHTGMCDFGMQCFERMQEVYGIEARVDHYSCMVDLLCRAG 396
Query: 111 DVEKAQRVFWKM 122
+E+A + M
Sbjct: 397 SLERAVSLIRSM 408
>gi|357117491|ref|XP_003560501.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Brachypodium distachyon]
Length = 652
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 67/196 (34%), Positives = 103/196 (52%), Gaps = 22/196 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A ++F M KDVI WT+IV Y + A + F Q P +D V WTAM+ GY +
Sbjct: 197 VGAARKVFDEMVVKDVICWTSIVVAYSRSRDMGSAEEVFGQCPVKDMVAWTAMVTGYAQN 256
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
+AL +F M I DE + ++ F ++ VG
Sbjct: 257 AMPMKALEVFDRMTALGIGIDEVSLTGAISACAQLGAVKRAAWVQEIAEMNGFGMNVVVG 316
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML-RASI 158
L+DMY KCG +++A +VF M K+ +T+++M+VGLA G A+ +F M+ RA +
Sbjct: 317 SGLVDMYAKCGLIDEACKVFDGMQEKNVYTYSSMVVGLASHGRAREAIALFKDMVRRADV 376
Query: 159 RLDEVTYVGVLSACTH 174
+ VT++GVL+AC+H
Sbjct: 377 APNHVTFIGVLTACSH 392
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 31/114 (27%)
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKML---------------------------- 123
F+ FV +LI Y CGDV A++VF +M+
Sbjct: 177 FDKHRFVENSLIGAYIACGDVGAARKVFDEMVVKDVICWTSIVVAYSRSRDMGSAEEVFG 236
Query: 124 ---RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
KD WTAM+ G A + AL++F +M I +DEV+ G +SAC
Sbjct: 237 QCPVKDMVAWTAMVTGYAQNAMPMKALEVFDRMTALGIGIDEVSLTGAISACAQ 290
>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 607
Score = 119 bits (297), Expect = 5e-25, Method: Composition-based stats.
Identities = 69/196 (35%), Positives = 102/196 (52%), Gaps = 24/196 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVNR 62
A +F M + +V+SWT++VSGY G VD A + F MP +++ V W AMI +++ NR
Sbjct: 154 ARRVFCTMSDPNVVSWTSLVSGYSQWGLVDEAFRVFELMPCKKNSVSWNAMIACFVKGNR 213
Query: 63 FREALTLFREMQTSN-IRRDEFTTVRILTTFNN---------------------DIFVGI 100
FREA LFR M+ + D F +L+ D +
Sbjct: 214 FREAFALFRRMRVEKKMELDRFVAATMLSACTGVGALEQGMWIHKYVEKTGIVLDSKLAT 273
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM-LRASIR 159
+IDMYCKCG ++KA VF + K +W MI G A+ G G+ A+ +F +M A +
Sbjct: 274 TIIDMYCKCGCLDKAFHVFCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVA 333
Query: 160 LDEVTYVGVLSACTHN 175
D +T+V VL+AC H+
Sbjct: 334 PDSITFVNVLTACAHS 349
Score = 40.4 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 12/153 (7%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ +AL++F + N D + T+ + + +Q P + ++ M+ +
Sbjct: 52 INYALKLFTTLPNPDTFLYNTLFKAFFS----------LSQTPSLSLLFYSHMLQHCVTP 101
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
N F +L R + + V + F D + LI +Y G ++ A+RVF
Sbjct: 102 NAFTFP-SLIRACKLEEEAKQLHAHV-LKFGFGGDTYALNNLIHVYFAFGSLDDARRVFC 159
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
M + +WT+++ G + G D A +F M
Sbjct: 160 TMSDPNVVSWTSLVSGYSQWGLVDEAFRVFELM 192
>gi|354805201|gb|AER41619.1| CRR4 [Oryza glumipatula]
Length = 745
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 99/193 (51%), Gaps = 25/193 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M KDV+SWT +VS Y G +D + F MP ++ V W AMI GY +R+
Sbjct: 261 ARSVFDRMDQKDVVSWTAMVSAYAKIGDLDTTNELFDHMPVKNLVSWNAMITGYNHNSRY 320
Query: 64 REALTLFREMQTSN-IRRDEFTTVRILTT---------------------FNNDIFVGIA 101
EAL F+ M R DE T V +++ + + +G A
Sbjct: 321 DEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNA 380
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDM+ KCGDV +AQ +F+KM + TWT MI G A + AL +++ M R ++LD
Sbjct: 381 LIDMFAKCGDVGRAQSIFYKMETRCIITWTTMISGFAFN---RDALLVYNNMCREGVQLD 437
Query: 162 EVTYVGVLSACTH 174
+ ++ L+AC H
Sbjct: 438 DTVFIAALAACAH 450
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 83/185 (44%), Gaps = 14/185 (7%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M ++DV+SW +IV Y++ G A +F MPER+ V W ++ G+ R+
Sbjct: 168 ARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDM 227
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFN-------------NDIFVGIALIDMYCKCG 110
A +F M + N T+ + D+ A++ Y K G
Sbjct: 228 VTARAVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIG 287
Query: 111 DVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS-QMLRASIRLDEVTYVGVL 169
D++ +F M K+ +W AMI G + D AL F ML R DE T V V+
Sbjct: 288 DLDTTNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVV 347
Query: 170 SACTH 174
SAC
Sbjct: 348 SACAQ 352
Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 92 FNNDIFVGIALIDMYCKC---GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALD 148
F +D+FV AL+D+Y +C G V A++VF +M+ +D +W +++ SG A+
Sbjct: 142 FGSDVFVQNALVDVYHRCGGGGGVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMG 201
Query: 149 MFSQM 153
F M
Sbjct: 202 FFEAM 206
>gi|255566945|ref|XP_002524455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536243|gb|EEF37895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 486
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 103/195 (52%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A +F +DV+S+T +++GY +RG +D A + F ++P RD V W AMI GY +
Sbjct: 175 LGNARLVFERSSMRDVVSYTALITGYASRGFLDQALELFDEIPVRDVVSWNAMIAGYTQS 234
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
RF EAL F EM +N+ + T + +L+ ++I V
Sbjct: 235 GRFEEALIFFEEMLRANVTPNMSTLLSVLSACAQSGSLKMGNWVSSWIEEHGLESNIKVM 294
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMY KCGD+E A +F + K+ +W MI G AL +F QML++++
Sbjct: 295 NALIDMYAKCGDLENALHLFEGIKNKNVISWNVMIGGYTHLSCYKEALGLFRQMLQSNVE 354
Query: 160 LDEVTYVGVLSACTH 174
++VT + +L AC +
Sbjct: 355 PNDVTLLSILPACAN 369
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 91/176 (51%), Gaps = 22/176 (12%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
++ Y G ++ A F + ++ + W MI GY ++ ++EAL LFR+M SN+
Sbjct: 296 ALIDMYAKCGDLENALHLFEGIKNKNVISWNVMIGGYTHLSCYKEALGLFRQMLQSNVEP 355
Query: 81 DEFTTVRILTTFNNDIFVGI----------------------ALIDMYCKCGDVEKAQRV 118
++ T + IL N +G+ +LIDMY KCG++E A ++
Sbjct: 356 NDVTLLSILPACANLGALGLGKWIHAYIDKNMKNLANNALWTSLIDMYAKCGNIEVANQI 415
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
F M K +W AMI G A+ G D A+ +FS+M + + D +T++GVLSAC H
Sbjct: 416 FDGMNPKSLASWNAMISGFAMHGQADLAISLFSRMTKEGLVPDNITFIGVLSACNH 471
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 82/196 (41%), Gaps = 21/196 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVL----WTAMIDG 56
+ +AL +F ++ + I W I+ G +A QY+ M + + ++
Sbjct: 74 LSYALLLFKSIGKPNQIIWNNIIRGLSLSESPILAIQYYVDMISSGFTPNTYTYPFVLKS 133
Query: 57 YLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN-----------------DIFVG 99
R++ E + ++ D F ++T + D+
Sbjct: 134 CARISSTHEGKQIHGQILKLGFDNDAFVHTSLITMYVQNGELGNARLVFERSSMRDVVSY 193
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALI Y G +++A +F ++ +D +W AMI G SG + AL F +MLRA++
Sbjct: 194 TALITGYASRGFLDQALELFDEIPVRDVVSWNAMIAGYTQSGRFEEALIFFEEMLRANVT 253
Query: 160 LDEVTYVGVLSACTHN 175
+ T + VLSAC +
Sbjct: 254 PNMSTLLSVLSACAQS 269
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 10 NMKN-KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALT 68
NMKN + WT+++ Y G +++A Q F M + W AMI G+ + A++
Sbjct: 386 NMKNLANNALWTSLIDMYAKCGNIEVANQIFDGMNPKSLASWNAMISGFAMHGQADLAIS 445
Query: 69 LFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMY 106
LF M + D T + +L+ N+ + + I+ +
Sbjct: 446 LFSRMTKEGLVPDNITFIGVLSACNHAGLLDLGHINHF 483
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYV 48
A +IF M K + SW ++SG+ GQ D+A F++M + V
Sbjct: 412 ANQIFDGMNPKSLASWNAMISGFAMHGQADLAISLFSRMTKEGLV 456
>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
gi|194706828|gb|ACF87498.1| unknown [Zea mays]
Length = 570
Score = 119 bits (297), Expect = 5e-25, Method: Composition-based stats.
Identities = 66/192 (34%), Positives = 101/192 (52%), Gaps = 22/192 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A F M K V+SWT+++ G VD AR +F MPER+ V W MI Y++ ++
Sbjct: 200 ARRCFEMMPIKSVVSWTSMLCAQTKHGSVDAARCWFDHMPERNTVSWNTMISCYVQRGQY 259
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
EAL L+++MQ+ DE T V +L+ N DI + +L
Sbjct: 260 HEALDLYKQMQSHGPAPDEATLVPVLSACGRIGDLTVGKMVHLYIRDNIHNPDISLINSL 319
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY KCG V+ A R+F +M ++ +W +I GLA+ G A+ F M+R + D
Sbjct: 320 LDMYAKCGQVDTAIRLFREMCNRNVVSWNVIIGGLAMHGRALDAITFFRSMVR-NTSPDG 378
Query: 163 VTYVGVLSACTH 174
+T+V +LS+C+H
Sbjct: 379 ITFVALLSSCSH 390
Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 59/203 (29%), Positives = 83/203 (40%), Gaps = 52/203 (25%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
++ Y + G + +R++F +M R+ V W +MI GY + REA LF EM+ D
Sbjct: 86 LLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGGYAQAGDTREACALFGEMRRQGFLGD 145
Query: 82 EFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVEKAQRVFW 120
EFT +L + D+ +G AL+DMY KCGD+ A+R F
Sbjct: 146 EFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPVDLILGGALVDMYSKCGDLCMARRCFE 205
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDT-------------------------------ALDM 149
M K +WT+M+ G D ALD+
Sbjct: 206 MMPIKSVVSWTSMLCAQTKHGSVDAARCWFDHMPERNTVSWNTMISCYVQRGQYHEALDL 265
Query: 150 FSQMLRASIRLDEVTYVGVLSAC 172
+ QM DE T V VLSAC
Sbjct: 266 YKQMQSHGPAPDEATLVPVLSAC 288
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 21/157 (13%)
Query: 39 FAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT------------- 85
F + + D V++ + Y + REAL L R M + +EFT
Sbjct: 2 FDGILDPDRVMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQAW 61
Query: 86 --------VRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGL 137
V + F +FV AL+ Y G + ++R F +M ++ +W +MI G
Sbjct: 62 DNALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGGY 121
Query: 138 AISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
A +G A +F +M R DE T +L AC+
Sbjct: 122 AQAGDTREACALFGEMRRQGFLGDEFTLASLLLACSQ 158
>gi|242063912|ref|XP_002453245.1| hypothetical protein SORBIDRAFT_04g002445 [Sorghum bicolor]
gi|241933076|gb|EES06221.1| hypothetical protein SORBIDRAFT_04g002445 [Sorghum bicolor]
Length = 603
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 95/192 (49%), Gaps = 25/192 (13%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
AL +F +M ++D++SW TI+ GY+ +G +D A +F +MPE+D W +I GY +
Sbjct: 260 ALRLFADMPDRDLVSWNTILQGYVQQGDMDGATAWFRKMPEKDEASWNTLISGY----KD 315
Query: 64 REALTLFREMQTSNIRRDEFT---------------------TVRILTTFNNDIFVGIAL 102
AL L EM R D+ T I T F D V +L
Sbjct: 316 EGALNLLSEMTQGGYRPDQATWSVAISICSSLAALGCGRMVHVCTIKTGFERDALVMSSL 375
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I MY KCG + +A +VF ++++D TW AMI A G AL +F +M + D
Sbjct: 376 ISMYSKCGLITEASQVFDLIVQRDTVTWNAMIATYAYHGLAAEALTLFDRMTKDGFSPDH 435
Query: 163 VTYVGVLSACTH 174
T++ VLSAC H
Sbjct: 436 ATFLSVLSACAH 447
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 85/173 (49%), Gaps = 22/173 (12%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +F M KD +SWT IV GY+ G VD A + F MP+RD + W M+ G++
Sbjct: 195 MQVAQRLFDEMPEKDTVSWTAIVRGYLQNGDVDAAWKVFQDMPDRDVLAWNTMMSGFVVS 254
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
R +AL LF +M R L ++N ++ Y + GD++ A F
Sbjct: 255 ERLDDALRLFADMPD-----------RDLVSWNT-------ILQGYVQQGDMDGATAWFR 296
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
KM KD+ +W +I G G AL++ S+M + R D+ T+ +S C+
Sbjct: 297 KMPEKDEASWNTLISGYKDEG----ALNLLSEMTQGGYRPDQATWSVAISICS 345
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 19/166 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F M ++ V+SW ++SGY+ G VD AR F MP R+ V W MI GY++ R
Sbjct: 74 ARELFDRMPDRSVVSWNAMISGYLWNGMVDRARDLFDVMPARNDVSWLMMISGYMKRKRV 133
Query: 64 REALTLFREMQTSN----------------IRRDEFTTVRILTTFNNDIFVGIALIDMYC 107
REA +F + ++ E R+ T D+ A+I Y
Sbjct: 134 REAREIFDRAPSPTTSVCNALLSGYAEHGYLKDAEDLFGRMQTP---DLVSWNAMITGYT 190
Query: 108 KCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+ G ++ AQR+F +M KD +WTA++ G +G D A +F M
Sbjct: 191 RAGMMQVAQRLFDEMPEKDTVSWTAIVRGYLQNGDVDAAWKVFQDM 236
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 18/136 (13%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A +F M ++V +W ++SG + G + AR F MP R+ V W A++ GY R
Sbjct: 9 VGAARRVFDEMSERNVFTWNCMISGLVRNGMLTDARGVFDTMPFRNSVSWAALLTGYARC 68
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
R EA LF M R + ++N A+I Y G V++A+ +F
Sbjct: 69 GRVAEARELFDRMPD-----------RSVVSWN-------AMISGYLWNGMVDRARDLFD 110
Query: 121 KMLRKDKFTWTAMIVG 136
M ++ +W MI G
Sbjct: 111 VMPARNDVSWLMMISG 126
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 18/129 (13%)
Query: 25 GYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFT 84
+ G+V AR+ F +M ER+ W MI G +R +A +F M
Sbjct: 2 AHFRAGRVGAARRVFDEMSERNVFTWNCMISGLVRNGMLTDARGVFDTM----------- 50
Query: 85 TVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGD 144
F N + AL+ Y +CG V +A+ +F +M + +W AMI G +G D
Sbjct: 51 ------PFRNSVSWA-ALLTGYARCGRVAEARELFDRMPDRSVVSWNAMISGYLWNGMVD 103
Query: 145 TALDMFSQM 153
A D+F M
Sbjct: 104 RARDLFDVM 112
>gi|255584555|ref|XP_002533004.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527215|gb|EEF29379.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 519
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 103/188 (54%), Gaps = 21/188 (11%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 67
F +++ +V+S+TT++ GY+ +G++D A Q F +MPER+ V W AM+ G+ ++ EA+
Sbjct: 157 FEDIQKPNVVSYTTLIHGYLKKGKIDDALQLFQEMPERNVVSWNAMVGGFSQMGHNEEAV 216
Query: 68 TLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMY 106
+LF EM ++ T +T+ N D+FV +L+ Y
Sbjct: 217 SLFIEMLREGFMPNQSTFPCAITSAANMASLGMGKSFHACAVKSLCTSDVFVCNSLVSFY 276
Query: 107 CKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYV 166
KCG +E + VF ++ ++ +W A+I G A +G G+ A+ F +M A +R + VT +
Sbjct: 277 AKCGSMEDSLLVFNELPDRNTVSWNAVICGFAQNGRGEDAVIFFERMRAAGLRPNSVTLL 336
Query: 167 GVLSACTH 174
G+L AC H
Sbjct: 337 GLLCACNH 344
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 80/187 (42%), Gaps = 52/187 (27%)
Query: 37 QYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT----- 91
+ F +MPE D + T +I + R +R+ EA+ LF M NI+ +EFT ++ +
Sbjct: 54 ELFDEMPELDVLSVTTLIGRFARQHRYEEAMCLFSRMLLLNIKPNEFTFATVIHSSTGLK 113
Query: 92 ----------------FNNDIFVGIALIDMYCK-C------------------------- 109
N +FVG A++D Y K C
Sbjct: 114 NIYLGKQLHARTMKMGLNTIVFVGSAMLDFYAKLCSFEEARNAFEDIQKPNVVSYTTLIH 173
Query: 110 -----GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVT 164
G ++ A ++F +M ++ +W AM+ G + GH + A+ +F +MLR ++ T
Sbjct: 174 GYLKKGKIDDALQLFQEMPERNVVSWNAMVGGFSQMGHNEEAVSLFIEMLREGFMPNQST 233
Query: 165 YVGVLSA 171
+ +++
Sbjct: 234 FPCAITS 240
>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
Length = 672
Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats.
Identities = 62/192 (32%), Positives = 105/192 (54%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F ++ V+S+T +++GY +RG ++ AR+ F ++ +D V W AMI GY+ F
Sbjct: 119 AHKVFDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNF 178
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
+EAL L+++M +N++ DE T V +++ F ++I + L
Sbjct: 179 KEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVL 238
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
ID+Y KCG+VE A +F + +KD +W +I G AL +F +MLR+ ++
Sbjct: 239 IDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPND 298
Query: 163 VTYVGVLSACTH 174
VT + VL AC H
Sbjct: 299 VTMLSVLPACAH 310
Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats.
Identities = 59/177 (33%), Positives = 96/177 (54%), Gaps = 23/177 (12%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
++ Y G+V+ A F + ++D + W +I G+ +N ++EAL LF+EM S +
Sbjct: 238 LIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPN 297
Query: 82 EFTTVRILTT---------------FNNDIFVGI--------ALIDMYCKCGDVEKAQRV 118
+ T + +L + N G+ +LIDMY KCGD+E A++V
Sbjct: 298 DVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQV 357
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
F ML + +W AMI G A+ G + A D+FS+M + I D++T+VG+LSAC+H+
Sbjct: 358 FDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHS 414
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 46/208 (22%), Positives = 90/208 (43%), Gaps = 45/208 (21%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGY-INRGQVDIARQYFAQMPERDYVLWTAMIDGYLR 59
+ +A+ IF ++ +++ W T+ G+ +N V + L+ MI L
Sbjct: 15 LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALK------------LYVCMISLGLL 62
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTT-FNNDIFVGIALIDMYCKCGDVEKAQRV 118
N + L ++ + + +L ++ D++V +LI MY + G +E A +V
Sbjct: 63 PNSYSFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKV 122
Query: 119 FWKMLRKDKFTWTAMIVGLA--------------------------ISGHGDT-----AL 147
F + + ++TA+I G A ISG+ +T AL
Sbjct: 123 FDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEAL 182
Query: 148 DMFSQMLRASIRLDEVTYVGVLSACTHN 175
+++ M++ +++ DE T V V+SAC +
Sbjct: 183 ELYKDMMKTNVKPDESTMVTVVSACAQS 210
Score = 43.9 bits (102), Expect = 0.026, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 23/138 (16%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T+++ Y G ++ A+Q F M R W AMI G+ + A LF +M+ + I
Sbjct: 339 TSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGID 398
Query: 80 RDEFTTVRILTTFNND--------IFVGIA--------------LIDMYCKCGDVEKAQR 117
D+ T V +L+ ++ IF ++ +ID+ CG ++A+
Sbjct: 399 PDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKE 458
Query: 118 VFWKM-LRKDKFTWTAMI 134
+ M + D W +++
Sbjct: 459 MIRTMPMEPDGVIWCSLL 476
>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats.
Identities = 64/184 (34%), Positives = 95/184 (51%), Gaps = 23/184 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDY--VLWTAMIDGYLRVNRFREALTLFRE 72
D S ++ Y+N ++ AR+ F MP+RD V W AMI Y++ NR EA LF
Sbjct: 128 DGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDR 187
Query: 73 MQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGD 111
M+ N+ D+F +L+ D + +IDMYCKCG
Sbjct: 188 MRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGC 247
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+EKA VF ++ +K +W MI GLA+ G G+ A+++F +M R + D +T+V VLSA
Sbjct: 248 LEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSA 307
Query: 172 CTHN 175
C H+
Sbjct: 308 CAHS 311
Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 23/141 (16%)
Query: 56 GYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNN 94
GYLR R + ++ M ++ ++FT ++ F
Sbjct: 68 GYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGA 127
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDK--FTWTAMIVGLAISGHGDTALDMFSQ 152
D F LI MY +E+A+RVF M ++D+ +W AMI S A +F +
Sbjct: 128 DGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDR 187
Query: 153 MLRASIRLDEVTYVGVLSACT 173
M ++ LD+ +LSACT
Sbjct: 188 MRLENVVLDKFVAASMLSACT 208
>gi|226530385|ref|NP_001145846.1| CRR4 [Zea mays]
gi|219884683|gb|ACL52716.1| unknown [Zea mays]
gi|414878658|tpg|DAA55789.1| TPA: CRR4 [Zea mays]
Length = 601
Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats.
Identities = 62/182 (34%), Positives = 101/182 (55%), Gaps = 21/182 (11%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
++VI T ++ Y+ +D AR+ F +MP RD V W+ MI GY R E+L LF M
Sbjct: 242 QNVIVHTALMEMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERM 301
Query: 74 QTSNIRRDEFTTVRILT---------------------TFNNDIFVGIALIDMYCKCGDV 112
+ +N + +E T V +L+ T ++G ALIDMY KCG V
Sbjct: 302 KATNCKPNEVTLVGVLSACAQLGSDELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHV 361
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+A+ VF +M +K W +MI GLA++G + A+ ++ +M+ ++ +E+T++ +L+AC
Sbjct: 362 ARARDVFHRMEQKVVIAWNSMIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTAC 421
Query: 173 TH 174
TH
Sbjct: 422 TH 423
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 63/197 (31%), Positives = 95/197 (48%), Gaps = 26/197 (13%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A+ F M KD I +++GY G V+ AR+ F MP + W +MI Y
Sbjct: 129 MDSAVMAFEEMPIKDPIPMNCLITGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHG 188
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFN-----------------------NDIF 97
F+EALTLF +M + T I T F+ ++
Sbjct: 189 GEFQEALTLFDQMLREGASPNAIT---ITTVFSICAKTGDLETGRRAKAWVSEEDLQNVI 245
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
V AL++MY KC +++A+R F +M R+D W+ MI G + +G +L++F +M +
Sbjct: 246 VHTALMEMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATN 305
Query: 158 IRLDEVTYVGVLSACTH 174
+ +EVT VGVLSAC
Sbjct: 306 CKPNEVTLVGVLSACAQ 322
Score = 52.8 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 44/109 (40%), Gaps = 31/109 (28%)
Query: 95 DIFVGIALIDMYCK-------------------------------CGDVEKAQRVFWKML 123
D+FV AL+D Y K GDVE+A+R+F M
Sbjct: 112 DVFVQTALVDFYAKNGNMDSAVMAFEEMPIKDPIPMNCLITGYSRSGDVEEARRLFDSMP 171
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
RK +W +MI A G AL +F QMLR + +T V S C
Sbjct: 172 RKTSASWNSMIACYAHGGEFQEALTLFDQMLREGASPNAITITTVFSIC 220
>gi|195651407|gb|ACG45171.1| CRR4 [Zea mays]
Length = 601
Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats.
Identities = 62/182 (34%), Positives = 101/182 (55%), Gaps = 21/182 (11%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
++VI T ++ Y+ +D AR+ F +MP RD V W+ MI GY R E+L LF M
Sbjct: 242 QNVIVHTALMEMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERM 301
Query: 74 QTSNIRRDEFTTVRILT---------------------TFNNDIFVGIALIDMYCKCGDV 112
+ +N + +E T V +L+ T ++G ALIDMY KCG V
Sbjct: 302 KATNCKPNEVTLVGVLSACAQLGSDELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHV 361
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+A+ VF +M +K W +MI GLA++G + A+ ++ +M+ ++ +E+T++ +L+AC
Sbjct: 362 ARARDVFHRMEQKVVIAWNSMIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTAC 421
Query: 173 TH 174
TH
Sbjct: 422 TH 423
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 63/197 (31%), Positives = 94/197 (47%), Gaps = 26/197 (13%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A+ F M KD I ++ GY G V+ AR+ F MP + W +MI Y
Sbjct: 129 MDSAVMAFEEMPIKDPIPMNCLIIGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHG 188
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFN-----------------------NDIF 97
F+EALTLF +M + T I T F+ ++
Sbjct: 189 GEFQEALTLFDQMLREGASPNAIT---ITTVFSICAKTGDLETGRRAKAWVSEEDLQNVI 245
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
V AL++MY KC +++A+R F +M R+D W+ MI G + +G +L++F +M +
Sbjct: 246 VHTALMEMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATN 305
Query: 158 IRLDEVTYVGVLSACTH 174
+ +EVT VGVLSAC
Sbjct: 306 CKPNEVTLVGVLSACAQ 322
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 18/127 (14%)
Query: 46 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDM 105
D + TA++D Y + A+ F EM +D N + +G
Sbjct: 112 DVFVQTALVDFYAKNGNMDSAVMAFEEMPI----KDPIPM--------NCLIIG------ 153
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y + GDVE+A+R+F M RK +W +MI A G AL +F QMLR + +T
Sbjct: 154 YSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQMLREGASPNAITI 213
Query: 166 VGVLSAC 172
V S C
Sbjct: 214 TTVFSIC 220
>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
Length = 640
Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats.
Identities = 73/199 (36%), Positives = 108/199 (54%), Gaps = 28/199 (14%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRG---QVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
A ++F D +SW +I++GY+ +G QV A + F +M E+D V W+A+I GY +
Sbjct: 183 ARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQN 242
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN-------------DIFVGI------- 100
+ EAL +F EM + +R DE V +L+ + I +GI
Sbjct: 243 GMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQ 302
Query: 101 -ALI----DMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155
ALI DMY KCG VE A VF M K +W A+I+GLA++G + +LDMFS+M
Sbjct: 303 NALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKN 362
Query: 156 ASIRLDEVTYVGVLSACTH 174
+ +E+T++GVL AC H
Sbjct: 363 NGVIPNEITFMGVLGACRH 381
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 54/198 (27%), Positives = 88/198 (44%), Gaps = 55/198 (27%)
Query: 32 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFT------- 84
+D + Q F ++ + +W M+ Y++ N +AL L++ M +N+ D +T
Sbjct: 79 LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQA 138
Query: 85 -TVRIL-------------TTFNNDIFVGIALIDMYCKCGDVEKAQRVF----------- 119
VR+L F++D++V LI+MY CG++ A+++F
Sbjct: 139 CAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSW 198
Query: 120 -------------------WKML----RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156
WK+ KD +W+A+I G +G + AL MF +M
Sbjct: 199 NSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNAN 258
Query: 157 SIRLDEVTYVGVLSACTH 174
+RLDEV V VLSAC H
Sbjct: 259 GMRLDEVVVVSVLSACAH 276
>gi|8920616|gb|AAF81338.1|AC007767_18 Contains similarity to a hypothetical protein F19I3.26 gi|7485810
from Arabidopsis thaliana BAC F19I3 gb|AC004238. It
contains a PPR repeat domain PF|01535. ESTs gb|AV539170,
gb|AV551571, gb|AA597781, gb|AV544524, gb|AV531577 and
gb|AV533492 come from this gene [Arabidopsis thaliana]
Length = 864
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 102/184 (55%), Gaps = 23/184 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM- 73
D +SWT+++ GY+ G V A F ++ ++D V WT MI G ++ F EA +L +M
Sbjct: 502 DKVSWTSMIDGYLEAGDVSRAFGLFQKLHDKDGVTWTVMISGLVQNELFAEAASLLSDMV 561
Query: 74 -------------------QTSNIRRDEFTTVRILTT---FNNDIFVGIALIDMYCKCGD 111
TSN+ + + I T ++ D+ + +L+ MY KCG
Sbjct: 562 RCGLKPLNSTYSVLLSSAGATSNLDQGKHIHCVIAKTTACYDPDLILQNSLVSMYAKCGA 621
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+E A +F KM++KD +W +MI+GL+ G D AL++F +ML + + + VT++GVLSA
Sbjct: 622 IEDAYEIFAKMVQKDTVSWNSMIMGLSHHGLADKALNLFKEMLDSGKKPNSVTFLGVLSA 681
Query: 172 CTHN 175
C+H+
Sbjct: 682 CSHS 685
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 90/171 (52%), Gaps = 20/171 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+E+F M ++V+SW T+V+G I G ++ A+Q F MP RD V W AMI GY+ +
Sbjct: 260 AVELFDEMPERNVVSWNTLVTGLIRNGDMEKAKQVFDAMPSRDVVSWNAMIKGYIENDGM 319
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
EA LF +M N+ T+ + ++ YC+ GDV +A R+F +M
Sbjct: 320 EEAKLLFGDMSEKNV-----------VTWTSMVY-------GYCRYGDVREAYRLFCEMP 361
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLR--ASIRLDEVTYVGVLSAC 172
++ +WTAMI G A + AL +F +M + ++ + T + + AC
Sbjct: 362 ERNIVSWTAMISGFAWNELYREALMLFLEMKKDVDAVSPNGETLISLAYAC 412
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 65/133 (48%), Gaps = 12/133 (9%)
Query: 16 VISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 75
V+ WT+++S Y G +D AR F MPER+ V AM+ GY++ R EA TLFREM
Sbjct: 180 VVYWTSLLSKYAKTGYLDEARVLFEVMPERNIVTCNAMLTGYVKCRRMNEAWTLFREMPK 239
Query: 76 SNIR------------RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+ + R E ++ L+ + GD+EKA++VF M
Sbjct: 240 NVVSWTVMLTALCDDGRSEDAVELFDEMPERNVVSWNTLVTGLIRNGDMEKAKQVFDAMP 299
Query: 124 RKDKFTWTAMIVG 136
+D +W AMI G
Sbjct: 300 SRDVVSWNAMIKG 312
Score = 38.5 bits (88), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 80/200 (40%), Gaps = 33/200 (16%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQM--------PERDYVLWTAMID 55
A +F M ++++SWT ++SG+ A F +M P + ++ A
Sbjct: 353 AYRLFCEMPERNIVSWTAMISGFAWNELYREALMLFLEMKKDVDAVSPNGETLISLAYAC 412
Query: 56 GYLRVNRFREALTLFREMQTSN----IRRDEFTTVRILTTFNNDIFVGIA---------- 101
G L V FR SN + D ++ + + + A
Sbjct: 413 GGLGV-EFRRLGEQLHAQVISNGWETVDHDGRLAKSLVHMYASSGLIASAQSLLNESFDL 471
Query: 102 -----LIDMYCKCGDVEKAQRVFWKMLR-KDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155
+I+ Y K GD+E+A+ +F ++ DK +WT+MI G +G A +F ++
Sbjct: 472 QSCNIIINRYLKNGDLERAETLFERVKSLHDKVSWTSMIDGYLEAGDVSRAFGLFQKLHD 531
Query: 156 ASIRLDEVTYVGVLSACTHN 175
D VT+ ++S N
Sbjct: 532 K----DGVTWTVMISGLVQN 547
>gi|297599623|ref|NP_001047477.2| Os02g0625100 [Oryza sativa Japonica Group]
gi|125582938|gb|EAZ23869.1| hypothetical protein OsJ_07586 [Oryza sativa Japonica Group]
gi|255671102|dbj|BAF09391.2| Os02g0625100 [Oryza sativa Japonica Group]
Length = 493
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 99/190 (52%), Gaps = 22/190 (11%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 67
F M K+V+SW T++ Y G + AR+ F +MP R+ W +MI G L+ + EAL
Sbjct: 162 FDAMPEKNVVSWNTMLGAYARAGMLPKARKLFDRMPSRNAATWGSMITGLLQSDHCEEAL 221
Query: 68 TLFREMQTSNIRRDEFTTVRILTTFNN----------------------DIFVGIALIDM 105
+F +M S + +E V ++ + A++DM
Sbjct: 222 RVFSDMVASGVVPNEPALVSTVSACTQLRWMEHGTWVHGYAERELNGAMSAVLATAIVDM 281
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y KCG + A RVF M ++ ++W +MI GLA++G AL +F +M A +R +++T+
Sbjct: 282 YGKCGSIRDAVRVFAAMPVRNIYSWNSMIAGLAMNGSERQALSLFWKMQLAGVRPNDITF 341
Query: 166 VGVLSACTHN 175
+G+LSAC+H+
Sbjct: 342 IGLLSACSHS 351
>gi|224088569|ref|XP_002308477.1| predicted protein [Populus trichocarpa]
gi|222854453|gb|EEE92000.1| predicted protein [Populus trichocarpa]
Length = 504
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 103/192 (53%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A F ++++ +++S+T ++ GY+ +G+ + A + F QMPER+ V W AMI G+ ++ +
Sbjct: 147 AQRAFEDIQHPNIVSYTALIHGYLKKGRFEEAFELFKQMPERNIVTWNAMIGGFSQMGQN 206
Query: 64 REALTLFREMQTSNIRRDEFT---------------------TVRILTTFNNDIFVGIAL 102
EA+ LF EM + ++T I T +FVG +L
Sbjct: 207 EEAVNLFVEMIREGLVPCQYTFPCAIIAAANIAALEMGRSFHACAIKTMGEFSVFVGNSL 266
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I Y KCG +E + R+F+++ + +W A+I G A +G G+ A+D + +M +R D
Sbjct: 267 ISFYAKCGSMEDSLRLFYELPERTIVSWNAVICGFAQNGRGENAVDFYERMRNTGLRPDS 326
Query: 163 VTYVGVLSACTH 174
VT +G+L AC H
Sbjct: 327 VTLLGLLWACNH 338
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 21/145 (14%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT--- 91
A Q F +P+ D V T +I + R++++REA+ LF M N+ +EFT ++ +
Sbjct: 46 ALQVFDTIPDLDVVSATTIIGQFARLHQYREAIQLFSRMLFLNVTPNEFTFGTVIHSSTS 105
Query: 92 ------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
N +FVG A++D Y K G +++AQR F + + ++TA+
Sbjct: 106 LGDLNLGRQFQACAMKMGLNYMVFVGSAVLDSYAKLGSIQEAQRAFEDIQHPNIVSYTAL 165
Query: 134 IVGLAISGHGDTALDMFSQMLRASI 158
I G G + A ++F QM +I
Sbjct: 166 IHGYLKKGRFEEAFELFKQMPERNI 190
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 18/113 (15%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
N V + ++ Y G + A++ F + + V +TA+I GYL+ RF EA LF++
Sbjct: 125 NYMVFVGSAVLDSYAKLGSIQEAQRAFEDIQHPNIVSYTALIHGYLKKGRFEEAFELFKQ 184
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK 125
M NI T+N A+I + + G E+A +F +M+R+
Sbjct: 185 MPERNI-----------VTWN-------AMIGGFSQMGQNEEAVNLFVEMIRE 219
>gi|222623741|gb|EEE57873.1| hypothetical protein OsJ_08529 [Oryza sativa Japonica Group]
Length = 500
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 95/175 (54%), Gaps = 2/175 (1%)
Query: 3 FALEIFGNMKNKDVISWTTIVSG-YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVN 61
AL++F M + +++ T++SG + G V A + F MP D V WTA+IDG ++
Sbjct: 157 LALQLFDAMPVRSAVTYNTVISGPHAGTGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNG 216
Query: 62 RFREALTLFREMQTSNIRRD-EFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
R EA+ FR + R R L ++ + +LIDMY +CG VE A++VF
Sbjct: 217 RHDEAIDCFRRHASGRCRAGLRHADSRHLRGLERNVRIANSLIDMYARCGQVELARQVFS 276
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
M ++ +W +MIVG A +G A++ F M R + D VT+ GVL+AC+H
Sbjct: 277 GMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAVTFTGVLTACSHG 331
>gi|222616388|gb|EEE52520.1| hypothetical protein OsJ_34732 [Oryza sativa Japonica Group]
Length = 462
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 102/191 (53%), Gaps = 22/191 (11%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE 65
++F +M K+ + WT +VSGY + G+ + A Q F MP R+ WTA+I G +
Sbjct: 13 KVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVG 72
Query: 66 ALTLFREMQTSNIRRDEFTTVRILTT----------------------FNNDIFVGIALI 103
A+ LF EM+ +R D+ + I+ F +++ VG ALI
Sbjct: 73 AVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALI 132
Query: 104 DMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEV 163
DMY KC D+ A+ VF + +D +WT M+VG A G + AL ++ +M+ A + +EV
Sbjct: 133 DMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEV 192
Query: 164 TYVGVLSACTH 174
T+VG++ AC+H
Sbjct: 193 TFVGLIYACSH 203
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
MYCKCG + ++VF M K+ WTA++ G A +G + AL +F M
Sbjct: 1 MYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSM 49
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 65/144 (45%), Gaps = 22/144 (15%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN 94
AR+ F + RD + WT M+ G + R EAL L+ M + + +E T
Sbjct: 144 AREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVT---------- 193
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT-----WTAMIVGLAISGHGDTALDM 149
FVG LI G V+K +++F M + T +T + L+ SGH A ++
Sbjct: 194 --FVG--LIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEEL 249
Query: 150 FSQMLRASIRLDEVTYVGVLSACT 173
+ M DE T+ +LSACT
Sbjct: 250 MTTM---PYEPDEATWGALLSACT 270
>gi|356518777|ref|XP_003528054.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 737
Score = 119 bits (297), Expect = 7e-25, Method: Composition-based stats.
Identities = 60/196 (30%), Positives = 100/196 (51%), Gaps = 24/196 (12%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
+ +F M ++V+SWT++V Y ++D A + F MP ++ V WTA++ G++R
Sbjct: 155 LSFSVFCYMPERNVVSWTSMVVAYTRACRLDEACRVFKDMPVKNTVSWTALLTGFVRNGG 214
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGI---------------------- 100
EA +F++M +R T V ++ + +G
Sbjct: 215 CDEAFDVFKQMLEEGVRPSAPTFVSVIDACAQEALIGRGKQVHGQIIRGDKSGNLFNVYV 274
Query: 101 --ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
ALIDMY KCGD++ A+ +F +D TW +I G A +GHG+ +L +F +M+ A +
Sbjct: 275 CNALIDMYAKCGDMKSAENLFEMAPMRDVVTWNTLITGFAQNGHGEESLAVFRRMIEAKV 334
Query: 159 RLDEVTYVGVLSACTH 174
+ VT++GVLS C H
Sbjct: 335 EPNHVTFLGVLSGCNH 350
Score = 82.8 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 55/202 (27%), Positives = 86/202 (42%), Gaps = 50/202 (24%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A + FG++ NK SW T++S Y G D A F +MP+R+ V + ++I G L+ R
Sbjct: 64 AHKTFGDLPNKTTRSWNTLISFYSKTGFFDEAHNLFDKMPQRNVVSYNSLISGNLQWLR- 122
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGD------------ 111
+ V ++ ++ + ALID Y KCG+
Sbjct: 123 ------------------QVHGVAVIVGMEWNVILNNALIDAYGKCGEPNLSFSVFCYMP 164
Query: 112 -------------------VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
+++A RVF M K+ +WTA++ G +G D A D+F Q
Sbjct: 165 ERNVVSWTSMVVAYTRACRLDEACRVFKDMPVKNTVSWTALLTGFVRNGGCDEAFDVFKQ 224
Query: 153 MLRASIRLDEVTYVGVLSACTH 174
ML +R T+V V+ AC
Sbjct: 225 MLEEGVRPSAPTFVSVIDACAQ 246
Score = 42.0 bits (97), Expect = 0.10, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
I T D F+ LID Y KCG E A + F + K +W +I + +G D A
Sbjct: 37 IKTALFFDAFLANGLIDAYSKCGCEESAHKTFGDLPNKTTRSWNTLISFYSKTGFFDEAH 96
Query: 148 DMFSQMLRASIRLDEVTYVGVLSA 171
++F +M + ++ V+Y ++S
Sbjct: 97 NLFDKMPQRNV----VSYNSLISG 116
>gi|242051158|ref|XP_002463323.1| hypothetical protein SORBIDRAFT_02g041810 [Sorghum bicolor]
gi|241926700|gb|EER99844.1| hypothetical protein SORBIDRAFT_02g041810 [Sorghum bicolor]
Length = 576
Score = 119 bits (297), Expect = 7e-25, Method: Composition-based stats.
Identities = 64/182 (35%), Positives = 100/182 (54%), Gaps = 22/182 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D + + +V Y G+++ AR+ F + +D V W AMI GY + EA+ LF M+
Sbjct: 220 DSLIGSALVGMYEKCGEMEEARRVFDGISNKDVVAWNAMITGYAQNGMSNEAIALFHSMR 279
Query: 75 TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVE 113
+ +R D+ T V +L++ ++++VG AL+DMY KCGD+E
Sbjct: 280 EAGLRPDKITLVGVLSSCAAVGALELGVELDGYALHRGLYSNVYVGTALVDMYAKCGDLE 339
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML-RASIRLDEVTYVGVLSAC 172
KA VF KM K++ +W A+I GLA +G G A+ F M ++ D++T++GVLSAC
Sbjct: 340 KATYVFGKMPFKNEASWNALICGLAFNGRGYDAIQQFELMRNEKGLQPDDITFIGVLSAC 399
Query: 173 TH 174
H
Sbjct: 400 VH 401
Score = 87.0 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 53/152 (34%), Positives = 78/152 (51%), Gaps = 9/152 (5%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
++++ Y G AR+ F +P RD V W +++ Y R R+A L R
Sbjct: 155 SLITMYSCLGDHLTARRVFDGIPHRDVVSWNSIMKAYERA-ACRDAGNLVLGKWVEEWVR 213
Query: 81 DEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAIS 140
V D +G AL+ MY KCG++E+A+RVF + KD W AMI G A +
Sbjct: 214 SAGMEV--------DSLIGSALVGMYEKCGEMEEARRVFDGISNKDVVAWNAMITGYAQN 265
Query: 141 GHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
G + A+ +F M A +R D++T VGVLS+C
Sbjct: 266 GMSNEAIALFHSMREAGLRPDKITLVGVLSSC 297
>gi|356529553|ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 540
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 104/196 (53%), Gaps = 24/196 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M DV++W ++V G + G +D+A F +M R+ + W ++I G +
Sbjct: 180 ARKVFDEMLVTDVVTWNSMVIGCLRNGGLDMAMDLFRKMNGRNIITWNSIITGLAQGGSA 239
Query: 64 REALTLFREMQTSN---IRRDEFTTVRILTT---------------------FNNDIFVG 99
+E+L LF EMQ + ++ D+ T +L+ D+ +G
Sbjct: 240 KESLELFHEMQILSDDMVKPDKITIASVLSACAQLGAIDHGKWVHGYLRRNGIECDVVIG 299
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL++MY KCGDV+KA +F +M KD WT MI A+ G G A + F +M +A ++
Sbjct: 300 TALVNMYGKCGDVQKAFEIFEEMPEKDASAWTVMISVFALHGLGWKAFNCFLEMEKAGVK 359
Query: 160 LDEVTYVGVLSACTHN 175
+ VT+VG+LSAC H+
Sbjct: 360 PNHVTFVGLLSACAHS 375
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 26/150 (17%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVN-----RFREALTLFREMQTSNIRRDEFT 84
G A F + D + MI Y+ + F +AL L+++M +I + T
Sbjct: 69 GSFSYATNVFHMIKNPDLRAYNIMIRAYISMESGDDTHFCKALMLYKQMFCKDIVPNCLT 128
Query: 85 ---------------------TVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
T I F D++V +LI +Y G + A++VF +ML
Sbjct: 129 FPFLLKGCTQWLDGATGQAIHTQVIKFGFLKDVYVANSLISLYMAGGLLSNARKVFDEML 188
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
D TW +M++G +G D A+D+F +M
Sbjct: 189 VTDVVTWNSMVIGCLRNGGLDMAMDLFRKM 218
>gi|115486992|ref|NP_001065983.1| Os12g0114400 [Oryza sativa Japonica Group]
gi|113648490|dbj|BAF29002.1| Os12g0114400, partial [Oryza sativa Japonica Group]
Length = 504
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 109/226 (48%), Gaps = 55/226 (24%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGY-------------------------------INR 29
+G A + F M +K+ +SW +V + +
Sbjct: 149 LGDARKAFDEMPDKNAVSWNALVGAHRAAADWMGADRVSQAMPVRNLSWWNAEIARNVRI 208
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G +D A + F++MPERD V W ++I GY ++ ++ +AL +F+EMQ + I+ E T V +L
Sbjct: 209 GYMDEAARIFSEMPERDAVSWNSLISGYTKLGKYTQALGIFQEMQENGIQPTELTLVLVL 268
Query: 90 TTFNN---------------------DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
D VG ALIDMY KCG ++ A++VF +M +D
Sbjct: 269 GACAKIGKLDLGTNIHRNLQNKGIVADGLVGNALIDMYAKCGMLDLAKKVFDRMSMRDIT 328
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
W AMIVG ++ G AL++F M I + VT++GVL+AC+H
Sbjct: 329 CWNAMIVGFSVHGCSREALELFDSM---KIEPNPVTFLGVLTACSH 371
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 82/186 (44%), Gaps = 39/186 (20%)
Query: 7 IFGNMKNKDVIS----WTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
I N++NK +++ ++ Y G +D+A++ F +M RD W AMI G+
Sbjct: 283 IHRNLQNKGIVADGLVGNALIDMYAKCGMLDLAKKVFDRMSMRDITCWNAMIVGFSVHGC 342
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTT-------------FNN---------DIFVGI 100
REAL LF M+ I + T + +LT FN+ D+
Sbjct: 343 SREALELFDSMK---IEPNPVTFLGVLTACSHGGLVNEGRKYFNSMIEDYRIVPDVKHYG 399
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFT-----WTAMIVGLAISGHGDTALDMFSQMLR 155
+IDM C+ G +E+A + M++++ T W ++ + GH D A MF LR
Sbjct: 400 CMIDMLCRYGKIEEA----YLMIKENPSTASSVLWKMLLAACRVHGHIDLAY-MFFHELR 454
Query: 156 ASIRLD 161
I D
Sbjct: 455 ELILTD 460
>gi|77553484|gb|ABA96280.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125578286|gb|EAZ19432.1| hypothetical protein OsJ_34992 [Oryza sativa Japonica Group]
Length = 518
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 109/226 (48%), Gaps = 55/226 (24%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGY-------------------------------INR 29
+G A + F M +K+ +SW +V + +
Sbjct: 163 LGDARKAFDEMPDKNAVSWNALVGAHRAAADWMGADRVSQAMPVRNLSWWNAEIARNVRI 222
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G +D A + F++MPERD V W ++I GY ++ ++ +AL +F+EMQ + I+ E T V +L
Sbjct: 223 GYMDEAARIFSEMPERDAVSWNSLISGYTKLGKYTQALGIFQEMQENGIQPTELTLVLVL 282
Query: 90 TTFNN---------------------DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
D VG ALIDMY KCG ++ A++VF +M +D
Sbjct: 283 GACAKIGKLDLGTNIHRNLQNKGIVADGLVGNALIDMYAKCGMLDLAKKVFDRMSMRDIT 342
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
W AMIVG ++ G AL++F M I + VT++GVL+AC+H
Sbjct: 343 CWNAMIVGFSVHGCSREALELFDSM---KIEPNPVTFLGVLTACSH 385
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 82/186 (44%), Gaps = 39/186 (20%)
Query: 7 IFGNMKNKDVIS----WTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
I N++NK +++ ++ Y G +D+A++ F +M RD W AMI G+
Sbjct: 297 IHRNLQNKGIVADGLVGNALIDMYAKCGMLDLAKKVFDRMSMRDITCWNAMIVGFSVHGC 356
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTT-------------FNN---------DIFVGI 100
REAL LF M+ I + T + +LT FN+ D+
Sbjct: 357 SREALELFDSMK---IEPNPVTFLGVLTACSHGGLVNEGRKYFNSMIEDYRIVPDVKHYG 413
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFT-----WTAMIVGLAISGHGDTALDMFSQMLR 155
+IDM C+ G +E+A + M++++ T W ++ + GH D A MF LR
Sbjct: 414 CMIDMLCRYGKIEEA----YLMIKENPSTASSVLWKMLLAACRVHGHIDLAY-MFFHELR 468
Query: 156 ASIRLD 161
I D
Sbjct: 469 ELILTD 474
>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 849
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 96/182 (52%), Gaps = 21/182 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV +++S Y +VDIA + F + + V W AMI GY + R EA+ F +MQ
Sbjct: 411 DVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQ 470
Query: 75 TSNIRRDEFTTVRIL---------------------TTFNNDIFVGIALIDMYCKCGDVE 113
NI+ D FT V ++ T + ++FV AL+DMY KCG V
Sbjct: 471 LQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVH 530
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
A+++F M + TW AMI G G G AL++F +M + I+ +EVT++ VLSAC+
Sbjct: 531 TARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACS 590
Query: 174 HN 175
H+
Sbjct: 591 HS 592
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 84/180 (46%), Gaps = 21/180 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
+V + T +V+ Y V+ A + F +MPERD V W +I GY + + AL L MQ
Sbjct: 209 NVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQ 268
Query: 75 TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVE 113
R D T V IL F + + V AL+DMY KCG V
Sbjct: 269 EEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVG 328
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
A+ +F +M K +W +MI G +G A+++F +M+ + + VT +G L AC
Sbjct: 329 TARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACA 388
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 77/173 (44%), Gaps = 21/173 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T +V Y G V AR F +M + V W +MIDGY++ A+ +F++M +
Sbjct: 315 TALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVE 374
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
T + L +D+ V +LI MY KC V+ A +
Sbjct: 375 MTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEI 434
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
F + K +W AMI+G A +G + A+D F +M +I+ D T V V+ A
Sbjct: 435 FENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPA 487
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 21/173 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T +VS + G + A + F + ++ L+ M+ GY R + +A++ F M+ +R
Sbjct: 113 TKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVR 172
Query: 80 R---------------------DEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
E I+ F +++F +++MY KC VE+A ++
Sbjct: 173 PVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKM 232
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
F +M +D W +I G A +G G TAL++ +M R D +T V +L A
Sbjct: 233 FDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPA 285
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+K+V T +V Y G V AR+ F M ER W AMIDGY + AL LF +
Sbjct: 510 DKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEK 569
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFV 98
M+ I+ +E T + +L+ ++ V
Sbjct: 570 MKKEVIKPNEVTFLCVLSACSHSGLV 595
Score = 39.7 bits (91), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 50/119 (42%)
Query: 57 YLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQ 116
Y+ + ++ + E+ TS +F + I ++ L+ ++CK G + +A
Sbjct: 70 YIPSHVYKHPSAILLELCTSMKELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAA 129
Query: 117 RVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
RVF + K + M+ G A + D A+ F +M +R + +L C N
Sbjct: 130 RVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDN 188
>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 723
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 96/176 (54%), Gaps = 22/176 (12%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
++++ Y G ++ AR+ F+ +P RD V WTAM+ GY ++ EA+ LFR MQ I+
Sbjct: 289 SLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKP 348
Query: 81 DEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVF 119
D+ T +LT+ +N D+++ AL+ MY KCG ++ A VF
Sbjct: 349 DKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVF 408
Query: 120 WKMLRKDKFTWTAMIVG-LAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+M ++ WTA+I G A G AL+ F QM + I+ D+VT+ VLSACTH
Sbjct: 409 NQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTH 464
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 94/175 (53%), Gaps = 21/175 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T++V Y G + AR F ++PE++ V WT +I GY + + AL L MQ + +
Sbjct: 187 TSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVA 246
Query: 80 RDEFTTVRIL---------------------TTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
++ T IL + + +++V +LI MYCKCG +E+A+++
Sbjct: 247 PNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKL 306
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
F + +D TWTAM+ G A G D A+++F +M + I+ D++T+ VL++C+
Sbjct: 307 FSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCS 361
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 21/174 (12%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
T++S Y G + AR+ F + +R+ V WTAMI+ ++ N+ EA + M+ + +
Sbjct: 87 TLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKP 146
Query: 81 DEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVEKAQRVF 119
D+ T V +L F N + VG +L+ MY KCGD+ KA+ +F
Sbjct: 147 DKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIF 206
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
++ K+ TWT +I G A G D AL++ M +A + +++T+ +L CT
Sbjct: 207 DRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCT 260
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYL-RVNRFREALTLFR 71
N DV + +VS Y G +D A F QM ER+ V WTA+I G + R REAL F
Sbjct: 382 NLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFD 441
Query: 72 EMQTSNIRRDEFTTVRILTT 91
+M+ I+ D+ T +L+
Sbjct: 442 QMKKQGIKPDKVTFTSVLSA 461
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%)
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+ MY KCG + A+RVF + ++ +WTAMI A + M A + D
Sbjct: 88 LLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPD 147
Query: 162 EVTYVGVLSACTH 174
+VT+V +L+A T+
Sbjct: 148 KVTFVSLLNAFTN 160
>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
Length = 691
Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats.
Identities = 68/193 (35%), Positives = 99/193 (51%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F +DV+S T +++GY +RG V AR+ F + ERD V W AMI GY+ +
Sbjct: 137 ARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGY 196
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT----------------------FNNDIFVGIA 101
EAL LF+EM +N+R DE T V +L+ F + + + A
Sbjct: 197 EEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNA 256
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
I +Y KCGDVE A +F + KD +W +I G AL +F +MLR+ +
Sbjct: 257 FIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPN 316
Query: 162 EVTYVGVLSACTH 174
+VT + VL AC H
Sbjct: 317 DVTMLSVLPACAH 329
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 61/173 (35%), Positives = 89/173 (51%), Gaps = 23/173 (13%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT 85
Y G V+IA F + +D V W +I GY +N ++EAL LF+EM S ++ T
Sbjct: 261 YSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTM 320
Query: 86 VRILTT-----------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKM 122
+ +L N + +LIDMY KCGD+E A +VF M
Sbjct: 321 LSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSM 380
Query: 123 LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
+ K +W AMI G A+ G + A D+FS+M + I D++T VG+LSAC+H+
Sbjct: 381 MHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHS 433
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 42/194 (21%), Positives = 84/194 (43%), Gaps = 21/194 (10%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYV----LWTAMIDGYL 58
+A+ +F + +++ W T++ G + + + + +M +V + ++
Sbjct: 35 YAVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCA 94
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTTF-----------------NNDIFVGIA 101
+ F E + ++ D + +++ + D+ A
Sbjct: 95 KSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTA 154
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LI Y GDV A++VF + +D +W AMI G + + AL++F +M+R ++R D
Sbjct: 155 LITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPD 214
Query: 162 EVTYVGVLSACTHN 175
E T V VLSAC +
Sbjct: 215 EGTLVSVLSACAQS 228
>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 868
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 94/191 (49%), Gaps = 21/191 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M NK+V++WT+ +S YI G + A + F++MP R+ V W MI GY +
Sbjct: 418 AEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDI 477
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
+ L M+ + D T + IL +D V +L
Sbjct: 478 VKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSL 537
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I MY KCG V +A+ VF KM +D W AM+ G G G A+D+F +ML+ + +E
Sbjct: 538 IGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNE 597
Query: 163 VTYVGVLSACT 173
+T V+SAC+
Sbjct: 598 ITLTAVISACS 608
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 93/185 (50%), Gaps = 26/185 (14%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV T +++ Y G++ +A + F +M ER+ V WTA+I + + EA L+ +M
Sbjct: 191 DVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQML 250
Query: 75 TSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVE 113
+ I + T V +L + N D+ V ALI MYCKC V+
Sbjct: 251 QAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQ 310
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDT-----ALDMFSQMLRASIRLDEVTYVGV 168
+A+ +F +M ++D +W+AMI G A SG+ D + +M R + ++VT++ +
Sbjct: 311 EAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSI 370
Query: 169 LSACT 173
L ACT
Sbjct: 371 LRACT 375
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 85/179 (47%), Gaps = 21/179 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ ++++ Y V A Q F +M RD V W++MI Y N +A F M
Sbjct: 90 DIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMT 149
Query: 75 TSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVE 113
+NI + T + IL NN D+ V ALI MY KCG++
Sbjct: 150 DANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEIS 209
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
A VF KM ++ +WTA+I A + A +++ QML+A I + VT+V +L++C
Sbjct: 210 VACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSC 268
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 49/80 (61%)
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML 154
DI++G +LI+ Y K DV A++VF +M +D TW++MI A + H A D F +M
Sbjct: 90 DIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMT 149
Query: 155 RASIRLDEVTYVGVLSACTH 174
A+I + +T++ +L AC +
Sbjct: 150 DANIEPNRITFLSILKACNN 169
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 81/215 (37%), Gaps = 57/215 (26%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV-----NRFREALTL 69
D+I +++ Y V AR+ F +M +RD + W+AMI GY + E L
Sbjct: 292 DMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQL 351
Query: 70 FREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCK 108
M+ + ++ T + IL F D + A+ +MY K
Sbjct: 352 LERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAK 411
Query: 109 CGDVEKAQRVFWKMLRKDKFTWTA-------------------------------MIVGL 137
CG + +A++VF KM K+ WT+ MI G
Sbjct: 412 CGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGY 471
Query: 138 AISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
A +G ++ S M + D VT + +L AC
Sbjct: 472 AQNGDIVKVFELLSSMKAEGFQPDRVTVITILEAC 506
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQ----VDIARQYFAQMPERDYVLWTAMIDGYLR 59
A +F M N+D ++W +++GY G VD+ ++ + + + TA+I R
Sbjct: 550 ARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSR 609
Query: 60 VNRFREALTLFREMQ 74
+E +FR MQ
Sbjct: 610 AGLVQEGREIFRMMQ 624
>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Glycine max]
Length = 628
Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats.
Identities = 68/199 (34%), Positives = 102/199 (51%), Gaps = 28/199 (14%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M + ++S+T +++ Y G + AR F M +D V W MIDGY +
Sbjct: 171 AQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCP 230
Query: 64 REALTLFREMQTS-------NIRRDEFTTVRILTTF-----------------NN----D 95
EAL FR+M +R +E T V +L++ NN +
Sbjct: 231 NEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGIKVN 290
Query: 96 IFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155
+ VG AL+DMYCKCG +E A++VF M KD W +MI+G I G D AL +F +M
Sbjct: 291 VRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCC 350
Query: 156 ASIRLDEVTYVGVLSACTH 174
++ ++T+V VL+AC H
Sbjct: 351 IGVKPSDITFVAVLTACAH 369
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 47/202 (23%), Positives = 76/202 (37%), Gaps = 55/202 (27%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT 85
Y + G + + F + P + LWT +I+ + + F AL+ + +M T I+ + FT
Sbjct: 65 YASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTL 124
Query: 86 VRILTT-----------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR---- 124
+L ++ ++V L+D Y + GDV AQ++F M
Sbjct: 125 SSLLKACTLHPARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSLV 184
Query: 125 ---------------------------KDKFTWTAMIVGLAISGHGDTALDMFSQ----- 152
KD W MI G A G + AL F +
Sbjct: 185 SYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMM 244
Query: 153 --MLRASIRLDEVTYVGVLSAC 172
+R +E+T V VLS+C
Sbjct: 245 GGNGNGKVRPNEITVVAVLSSC 266
>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like, partial [Vitis vinifera]
Length = 621
Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats.
Identities = 64/181 (35%), Positives = 91/181 (50%), Gaps = 21/181 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D + W+ + Y G + AR F + +RD V WTAMID Y + R E LF ++
Sbjct: 256 DGVVWSALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLL 315
Query: 75 TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVE 113
S I +EFT +L F+ F L+ MY KCG+++
Sbjct: 316 KSGIWPNEFTFSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIK 375
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
A+RVF M R D +WT++I G A +G D AL F +L++ + D +T+VGVLSACT
Sbjct: 376 NARRVFNGMPRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACT 435
Query: 174 H 174
H
Sbjct: 436 H 436
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 67/191 (35%), Positives = 98/191 (51%), Gaps = 22/191 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M +D+ SW ++SGY G++ AR+ F QM ERD WTAM GY+R ++
Sbjct: 143 AKRLFDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQH 202
Query: 64 REALTLFREMQT-SNIRRDEFTTVR---------------------ILTTFNNDIFVGIA 101
EAL LFR MQ N + ++FT + + D V A
Sbjct: 203 EEALELFRAMQRHENFKCNKFTMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSA 262
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L DMY KCG + +A+ +F K + +D +WTAMI G + +FS +L++ I +
Sbjct: 263 LSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPN 322
Query: 162 EVTYVGVLSAC 172
E T+ GVL+AC
Sbjct: 323 EFTFSGVLNAC 333
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 18/144 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQM----PERDYVLWTAMIDGYLR 59
A +F M D++SWT+++SGY GQ D A Q+F + + D++ + ++
Sbjct: 377 ARRVFNGMPRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACTH 436
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119
+ L F ++ + T D + LID+ + G +++A+ +
Sbjct: 437 AGLVDKGLEYFDSIKEKH-----------GLTHTADHYA--CLIDLLSRSGRLQEAEDII 483
Query: 120 WKM-LRKDKFTWTAMIVGLAISGH 142
KM + DKF W +++ G I G+
Sbjct: 484 DKMPIEPDKFLWASLLGGCRIHGN 507
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
++DMY KC + A+R+F +M +D +W MI G A +G A +F QM
Sbjct: 130 ILDMYIKCNSLVNAKRLFDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQM 181
>gi|224056897|ref|XP_002299078.1| predicted protein [Populus trichocarpa]
gi|222846336|gb|EEE83883.1| predicted protein [Populus trichocarpa]
Length = 488
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 94/192 (48%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A + G ++ ++ ++SGY+ G+VD AR+ F M +D W+A+I GY +
Sbjct: 145 AERVLGEFSEENTLAKNAMISGYLTEGRVDKARKMFDDMAAKDAASWSALITGYTKNGMH 204
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
EAL LF++M S+I +E V +L+ + AL
Sbjct: 205 TEALALFQDMMVSHILPNEAALVSLLSACGQLGTLHQGRWIHAYIDKTRVLMSTKLTTAL 264
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY K G +E +F KM R+D TW MI AI GH +F +ML IR ++
Sbjct: 265 IDMYAKSGSIECGYGLFQKMARRDVVTWGVMISAFAIHGHASKCFQLFDEMLADGIRPNK 324
Query: 163 VTYVGVLSACTH 174
V +V +LSAC+H
Sbjct: 325 VIFVAILSACSH 336
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 69/183 (37%), Gaps = 33/183 (18%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
++ Y+ Q+ A F ++P D ++ MI G L ++ F L
Sbjct: 52 LLEAYVTMSQIYYAFSIFERIPSPDVFVYNTMIRG-LTMDNFTYTFVLKACSHLKAPFEG 110
Query: 82 EFTTVRILTT-FNNDIFVGIALIDMYCKCGDVEKAQRV---------------------- 118
+ +I+ D + +LI MY G ++ A+RV
Sbjct: 111 KQVHCQIIKAGIVPDTHIHSSLIHMYTNSGSIDDAERVLGEFSEENTLAKNAMISGYLTE 170
Query: 119 ---------FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVL 169
F M KD +W+A+I G +G AL +F M+ + I +E V +L
Sbjct: 171 GRVDKARKMFDDMAAKDAASWSALITGYTKNGMHTEALALFQDMMVSHILPNEAALVSLL 230
Query: 170 SAC 172
SAC
Sbjct: 231 SAC 233
>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
Length = 752
Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats.
Identities = 61/192 (31%), Positives = 102/192 (53%), Gaps = 22/192 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M ++V++W +++ Y+ VD A F +MPE++ + WT +I+GY+R+ +
Sbjct: 139 ARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKL 198
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
EA L +M N + D+ T L++ + D+FV AL
Sbjct: 199 DEARQLLNQMPYRN-KPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNAL 257
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I MY KCG + A+ +F + D +W ++I A++G+G AL +F +M + DE
Sbjct: 258 ITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDE 317
Query: 163 VTYVGVLSACTH 174
VT+VG+LSAC+H
Sbjct: 318 VTFVGILSACSH 329
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 51/186 (27%), Positives = 89/186 (47%), Gaps = 18/186 (9%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M KD++SW ++++GY G++ + Q+F +M ERD V W M+DG++ V
Sbjct: 46 ARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDL 105
Query: 64 REALTLFREMQTSNI-----------RRDEFTTVRILTTFNN----DIFVGIALIDMYCK 108
+ F ++ N R + R L F+ ++ A+I Y +
Sbjct: 106 NSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRL--FDQMPIRNVVAWNAMIAAYVQ 163
Query: 109 CGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGV 168
V++A +F +M K+ +WT +I G G D A + +QM + + D+ T+
Sbjct: 164 NCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRN-KPDQSTFACG 222
Query: 169 LSACTH 174
LS+C H
Sbjct: 223 LSSCAH 228
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 22/150 (14%)
Query: 22 IVSGYINRGQVDIARQYFAQMPER-DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
+++ Y G++ AR F +P + + V AM+ GY + +F EA LF M +
Sbjct: 1 MITCYTRNGELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPA----K 56
Query: 81 DEFTTVRILT--TFNNDIFVGIA---------------LIDMYCKCGDVEKAQRVFWKML 123
D + +LT T N ++ +G+ ++D + + GD+ + F K+
Sbjct: 57 DLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIP 116
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+ +W M+ G A G A +F QM
Sbjct: 117 NPNTVSWVTMLCGFARFGKIAEARRLFDQM 146
>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 624
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
++D+ SW ++ GY+ G++ A++ F +M ERD V WT +I GY++V F+EAL LF E
Sbjct: 180 DQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHE 239
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFVG---------------------IALIDMYCKCGD 111
M + +EFT L N + + +L+DMY KCG+
Sbjct: 240 MLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGE 299
Query: 112 VEKAQRVFWKM--LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVL 169
++ A +VF L+ + W AMI G A+ G A+D+F QM + ++VT+V +L
Sbjct: 300 IDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALL 359
Query: 170 SACTH 174
+AC+H
Sbjct: 360 NACSH 364
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 64/150 (42%), Gaps = 29/150 (19%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRV-----NRFREALTLFREMQTSNIRRDEFT 84
G + A Q F Q+P+ D ++ MI + + N R L++ R S + +T
Sbjct: 63 GSLSYAHQLFDQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVR---VSGFLPNRYT 119
Query: 85 TVRILTTFNN---------------------DIFVGIALIDMYCKCGDVEKAQRVFWKML 123
V + N ++FV A+I MY G V++A+RVF L
Sbjct: 120 FVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSL 179
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+D ++W MI G SG A +MF +M
Sbjct: 180 DQDLYSWNIMIGGYVGSGEIGRAKEMFDEM 209
>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
Length = 736
Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats.
Identities = 63/176 (35%), Positives = 94/176 (53%), Gaps = 23/176 (13%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
++ Y+ G ++ A F ++ +++ V W MI GY ++ ++EAL LFR M SNI +
Sbjct: 302 LIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPN 361
Query: 82 EFTTVRIL-----------------------TTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
+ T + IL + N + + +LIDMY KCGD+ A+R+
Sbjct: 362 DVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRI 421
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
F M K TW AMI G A+ GH DTAL +FS+M D++T+VGVL+AC H
Sbjct: 422 FDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKH 477
Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats.
Identities = 58/190 (30%), Positives = 101/190 (53%), Gaps = 22/190 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F +D +S+T +++GY ++G +D AR+ F ++P RD V W AMI GY + R EA
Sbjct: 185 VFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEA 244
Query: 67 LTLFREMQTSNIRRDEFTTVRILTT----------------------FNNDIFVGIALID 104
+ F EM+ + + + T + +L+ ++I + LID
Sbjct: 245 MAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLID 304
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVT 164
MY KCGD+E+A +F K+ K+ +W MI G AL +F +M++++I ++VT
Sbjct: 305 MYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVT 364
Query: 165 YVGVLSACTH 174
++ +L AC +
Sbjct: 365 FLSILPACAN 374
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/196 (20%), Positives = 82/196 (41%), Gaps = 21/196 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQM----PERDYVLWTAMIDG 56
+ +AL +F ++N + + W ++ G + +A +Y+ M E + + ++
Sbjct: 78 LSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKS 137
Query: 57 YLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN-----------------DIFVG 99
++ E + + + + F ++ + D
Sbjct: 138 CTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSF 197
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALI Y G +++A+ +F ++ +D +W AMI G A SG + A+ F +M RA +
Sbjct: 198 TALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVT 257
Query: 160 LDEVTYVGVLSACTHN 175
+ T + VLSAC +
Sbjct: 258 PNVSTMLSVLSACAQS 273
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 43/169 (25%), Positives = 68/169 (40%), Gaps = 25/169 (14%)
Query: 10 NMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 69
+MKN V WT+++ Y G + +A++ F M + W AMI G+ AL L
Sbjct: 394 SMKNT-VALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGL 452
Query: 70 FREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCK-CGDVEKAQRVFWKMLRKDKF 128
F M + D+ T V +LT CK G + +R F M++ K
Sbjct: 453 FSRMTSEGFVPDDITFVGVLTA---------------CKHAGLLSLGRRYFSSMIQDYKV 497
Query: 129 T-----WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+ + MI +G D A + M ++ D + +L AC
Sbjct: 498 SPKLPHYGCMIDLFGRAGLFDEAETLVKNM---EMKPDGAIWCSLLGAC 543
Score = 37.0 bits (84), Expect = 3.2, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 10/135 (7%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ A IF M K + +W ++SG+ G D A F++M +V G L
Sbjct: 415 LAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTA 474
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
+ L+L R +S I+ ++ L + +ID++ + G ++A+ +
Sbjct: 475 CKHAGLLSLGRRYFSSMIQ--DYKVSPKLPHYG-------CMIDLFGRAGLFDEAETLVK 525
Query: 121 KM-LRKDKFTWTAMI 134
M ++ D W +++
Sbjct: 526 NMEMKPDGAIWCSLL 540
>gi|357469567|ref|XP_003605068.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506123|gb|AES87265.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 494
Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 107/197 (54%), Gaps = 25/197 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++FG M +++ ++W +SG I GQ++ AR F +M R V WT +IDGY R+N+
Sbjct: 168 AAQVFGEMPDRNTVTWNVFISGLIKWGQLEFARSVFDRMVVRSVVSWTLVIDGYTRMNKP 227
Query: 64 REALTLFREM-QTSNIRRDEFTTVRILTT---------------------FNN-DIFVGI 100
+AL LFR+M + I +E T + + FN DI +
Sbjct: 228 LKALALFRKMIEVDGIEPNEVTLLTVFPAIAHLGNVKMCESVHGYVEKRGFNAVDIRIVN 287
Query: 101 ALIDMYCKCGDVEKAQRVFWKML--RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
ALID+Y KCG +E A +F +M R++ +W +++ G A G A+D F +M +A +
Sbjct: 288 ALIDLYAKCGCIESASGLFSEMPDWRRNSVSWNSVMSGYATFGMVREAVDTFEKMEKAGV 347
Query: 159 RLDEVTYVGVLSACTHN 175
R + V ++ +LSAC+H+
Sbjct: 348 RPNHVAFLSILSACSHS 364
Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
F N +FV L+ MY G + A +VF +M ++ TW I GL G + A +F
Sbjct: 145 FENHVFVQTGLLHMYSNWGFLVDAAQVFGEMPDRNTVTWNVFISGLIKWGQLEFARSVFD 204
Query: 152 QMLRASI 158
+M+ S+
Sbjct: 205 RMVVRSV 211
>gi|224066751|ref|XP_002302197.1| predicted protein [Populus trichocarpa]
gi|222843923|gb|EEE81470.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 52/213 (24%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA------- 66
K+V++WT ++ GY ++G+++ AR F MP+R++ +W++MI GY ++ +EA
Sbjct: 85 KNVVTWTVMIDGYASKGEMEAARLLFEDMPQRNFFVWSSMISGYCKIGNVKEARAIFDRV 144
Query: 67 ------------------------LTLFREMQTSNIRRDEFTTVRILTT--------FNN 94
L F +MQ DE T V +L+
Sbjct: 145 PVRNLVNWNSLICGYSQNGFCEEALDAFGKMQNEGYEPDEVTVVGVLSACAQLSLLDVGK 204
Query: 95 DI-------------FVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISG 141
D+ FV AL+DMY KCGD+ A+ +F +M K+ W +MI G A+ G
Sbjct: 205 DVHKMICAKGMKLNEFVVNALVDMYAKCGDLTGARLIFERMTNKNNACWNSMISGFAVHG 264
Query: 142 HGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
AL+ F +M ++ + DE+T++ VLSAC H
Sbjct: 265 KTKEALEFFGRMEESNEKPDEITFLSVLSACVH 297
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 91/184 (49%), Gaps = 15/184 (8%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE 65
++F M ++V++W ++SGY G + A F +M R+ V W MIDG+ R
Sbjct: 13 KLFEYMPERNVVTWNAMISGYGKNGDMKSASVLFDKMSTRNAVSWIEMIDGFARSGDMVA 72
Query: 66 ALTLFREM--QTSNI-----------RRDEFTTVRIL--TTFNNDIFVGIALIDMYCKCG 110
A F E+ + N+ + E R+L + FV ++I YCK G
Sbjct: 73 ARRTFNEVPFELKNVVTWTVMIDGYASKGEMEAARLLFEDMPQRNFFVWSSMISGYCKIG 132
Query: 111 DVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLS 170
+V++A+ +F ++ ++ W ++I G + +G + ALD F +M DEVT VGVLS
Sbjct: 133 NVKEARAIFDRVPVRNLVNWNSLICGYSQNGFCEEALDAFGKMQNEGYEPDEVTVVGVLS 192
Query: 171 ACTH 174
AC
Sbjct: 193 ACAQ 196
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+V Y G + AR F +M ++ W +MI G+ + +EAL F M+ SN +
Sbjct: 223 NALVDMYAKCGDLTGARLIFERMTNKNNACWNSMISGFAVHGKTKEALEFFGRMEESNEK 282
Query: 80 RDEFTTVRILTTFNNDIFVGIAL 102
DE T + +L+ + FV + L
Sbjct: 283 PDEITFLSVLSACVHGGFVEVGL 305
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
MY KCGD+ ++++F M ++ TW AMI G +G +A +F +M
Sbjct: 1 MYAKCGDIPDSRKLFEYMPERNVVTWNAMISGYGKNGDMKSASVLFDKM 49
>gi|115479117|ref|NP_001063152.1| Os09g0411600 [Oryza sativa Japonica Group]
gi|50252330|dbj|BAD28363.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113631385|dbj|BAF25066.1| Os09g0411600 [Oryza sativa Japonica Group]
Length = 548
Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats.
Identities = 69/196 (35%), Positives = 100/196 (51%), Gaps = 25/196 (12%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A +F M + V +W +++ Y+ ++D A +F +MP RD V WT MI G +
Sbjct: 211 LGEARRVFDEMPGRTVAAWNCMLAAYVRCCEMDAALWFFNEMPGRDSVAWTTMIAGCVNA 270
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTF--NNDIFVGI------------------ 100
+ EA+ LF M+ +N + D T V +LT D+ +G
Sbjct: 271 GKAAEAVELFWRMRKANAKVDAVTMVALLTACAEQGDLRLGRWVHAHVEQEGRQWRTVLL 330
Query: 101 --ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
ALI+MY KCG VE A R+F M R+ +WT MI GLAI G + ALD+F +M
Sbjct: 331 DNALINMYVKCGAVEDAHRLFLVMPRRSTVSWTTMISGLAIHGRAEEALDLFHRMQE--- 387
Query: 159 RLDEVTYVGVLSACTH 174
R D T + VL AC++
Sbjct: 388 RPDGATLLAVLLACSN 403
>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
Length = 539
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 99/186 (53%), Gaps = 23/186 (12%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
++D+ SW ++ GY+ G++ A++ F +M ERD V WT +I GY++V F+EAL LF E
Sbjct: 95 DQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHE 154
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFVG---------------------IALIDMYCKCGD 111
M + +EFT L N + + +L+DMY KCG+
Sbjct: 155 MLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGE 214
Query: 112 VEKAQRVFWKM--LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVL 169
++ A +VF L+ + W AMI G A+ G A+D+F QM + ++VT+V +L
Sbjct: 215 IDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALL 274
Query: 170 SACTHN 175
+AC+H
Sbjct: 275 NACSHG 280
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
I +++FV A+I MY G V++A+RVF L +D ++W MI G SG A
Sbjct: 59 IKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAK 118
Query: 148 DMFSQM 153
+MF +M
Sbjct: 119 EMFDEM 124
>gi|125605669|gb|EAZ44705.1| hypothetical protein OsJ_29332 [Oryza sativa Japonica Group]
Length = 548
Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats.
Identities = 69/196 (35%), Positives = 100/196 (51%), Gaps = 25/196 (12%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A +F M + V +W +++ Y+ ++D A +F +MP RD V WT MI G +
Sbjct: 211 LGEARRVFDEMPGRTVAAWNCMLAAYVRCCEMDAALWFFNEMPGRDSVAWTTMIAGCVNA 270
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTF--NNDIFVGI------------------ 100
+ EA+ LF M+ +N + D T V +LT D+ +G
Sbjct: 271 GKAAEAVELFWRMRKANAKVDAVTMVALLTACAEQGDLRLGRWVHAHVEQEGRQWRTVLL 330
Query: 101 --ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
ALI+MY KCG VE A R+F M R+ +WT MI GLAI G + ALD+F +M
Sbjct: 331 DNALINMYVKCGAVEDAHRLFLVMPRRSTVSWTTMISGLAIHGRAEEALDLFHRMQE--- 387
Query: 159 RLDEVTYVGVLSACTH 174
R D T + VL AC++
Sbjct: 388 RPDGATLLAVLLACSN 403
>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 23/178 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+ ++ Y G + AR+ F M ++D V W AMI GY + EA+ LF++M+ S+
Sbjct: 267 SALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTA 326
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
D+ T + IL+ F +D++VG AL+DMY KCG ++ A RV
Sbjct: 327 PDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRV 386
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR--ASIRLDEVTYVGVLSACTH 174
F+ M K++ +W AMI LA G AL +F M+ ++ +++T+VGVLSAC H
Sbjct: 387 FYGMPNKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVH 444
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 59/173 (34%), Positives = 94/173 (54%), Gaps = 21/173 (12%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
++++ Y G++ AR+ F ++ ++D V W +MI GY ++ EA+ LFREM + +
Sbjct: 167 SLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQP 226
Query: 81 DEFTTVRIL---------------------TTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119
+E + V +L + F+G ALI MY KCGD+ A+R+F
Sbjct: 227 NEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIF 286
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
M +KDK TW AMI G A +G + A+ +F M +S D++T +G+LSAC
Sbjct: 287 DSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSAC 339
Score = 60.1 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 48/81 (59%)
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
+ D V +LI MY +CG + A++VF ++ +KD +W +MI G + H A+ +F
Sbjct: 158 LDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFR 217
Query: 152 QMLRASIRLDEVTYVGVLSAC 172
+M+ A + +E++ V VL AC
Sbjct: 218 EMMEAGFQPNEMSLVSVLGAC 238
>gi|297846216|ref|XP_002890989.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297336831|gb|EFH67248.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 792
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 103/184 (55%), Gaps = 23/184 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM- 73
D +SWT+++ GY++ G V A F ++ ++D V WT MI G ++ F EA +L +M
Sbjct: 429 DKVSWTSMIDGYLDAGDVSRAFDLFQKLHDKDGVTWTVMISGLVQNELFAEAASLLSDMV 488
Query: 74 -------------------QTSNIRRDEFTTVRILTT---FNNDIFVGIALIDMYCKCGD 111
TSN+ + + I T ++ D+ + +L+ MY KCG
Sbjct: 489 RCGLKPLNSTYSVLLSSAGATSNLDQGKHLHCVIAKTTACYDPDLILQNSLVSMYAKCGA 548
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
++ A +F KM+RKD +W ++I+GL+ G D AL +F +ML + ++ + VT++GVLSA
Sbjct: 549 IDDAYEIFSKMVRKDIVSWNSVIIGLSHHGLADKALKLFKEMLDSGMKPNSVTFLGVLSA 608
Query: 172 CTHN 175
C+H+
Sbjct: 609 CSHS 612
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 88/171 (51%), Gaps = 20/171 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+E+F M ++V+SW T+V+G I G+ + A+Q F MP RD V W AMI GY+
Sbjct: 187 AVELFDEMPERNVVSWNTLVTGLIRNGETEKAKQVFDAMPSRDAVSWNAMIKGYIENGGM 246
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
EA LF M N+ T+ + ++ YC+ GDV +A R+F +M
Sbjct: 247 EEAKLLFENMSEKNV-----------VTWTSMVY-------GYCRYGDVHEAYRLFCEMP 288
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLR--ASIRLDEVTYVGVLSAC 172
++ +WTAMI G A + AL +F +M + +I + T + + AC
Sbjct: 289 ERNVVSWTAMISGFAWNEFYREALMLFLEMKKDVDAISPNGETLISLAYAC 339
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 26/162 (16%)
Query: 16 VISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 75
VI T++++ Y G +D AR F MPER+ V AM+ GY++ R EA TLFREM
Sbjct: 107 VIYCTSLLTKYAKAGYLDEARVLFEVMPERNIVTCNAMLTGYVKCRRLNEAWTLFREMPK 166
Query: 76 SNI-------------RRDEFTTV------RILTTFNNDIFVGIALIDMYCKCGDVEKAQ 116
+ + R D+ + R + ++N L+ + G+ EKA+
Sbjct: 167 NVVSWTVMLTALCDDGRSDDAVELFDEMPERNVVSWNT-------LVTGLIRNGETEKAK 219
Query: 117 RVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
+VF M +D +W AMI G +G + A +F M ++
Sbjct: 220 QVFDAMPSRDAVSWNAMIKGYIENGGMEEAKLLFENMSEKNV 261
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 53 MIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDV 112
+I YL+ F A TLFR +++ +D ++ID Y GDV
Sbjct: 404 IISAYLKNGDFERAETLFRRVESL-----------------HDKVSWTSMIDGYLDAGDV 446
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+A +F K+ KD TWT MI GL + A + S M+R ++ TY +LS+
Sbjct: 447 SRAFDLFQKLHDKDGVTWTVMISGLVQNELFAEAASLLSDMVRCGLKPLNSTYSVLLSS 505
Score = 38.9 bits (89), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 72/177 (40%), Gaps = 22/177 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYLR 59
A EIF M KD++SW +++ G + G D A + F +M + + V + ++
Sbjct: 552 AYEIFSKMVRKDIVSWNSVIIGLSHHGLADKALKLFKEMLDSGMKPNSVTFLGVLSACSH 611
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119
+ L LF+ M+ + + + I++ID+ + G +++A+
Sbjct: 612 SGLITKGLELFKAMKET-------------YSIQPGVEHYISMIDLLGRAGKLKEAEEFI 658
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR---LDEVTYVGVLSACT 173
+ T ++GL D D RA++R LD V G ++ C
Sbjct: 659 SALPFTPDHTVYGALLGLCGLNWRDR--DAAGIAERAAMRLLELDPVNAPGHVALCN 713
>gi|224123726|ref|XP_002330193.1| predicted protein [Populus trichocarpa]
gi|222871649|gb|EEF08780.1| predicted protein [Populus trichocarpa]
Length = 485
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 99/193 (51%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +DVI W ++ G+ RG VD+ F QM +R V W MI + R
Sbjct: 161 AEKVFDEMYQRDVIVWNLMIHGFCKRGDVDMGLCLFRQMRKRSVVSWNIMISCLAQSRRD 220
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT----------------------FNNDIFVGIA 101
EAL LF +M + DE T V +L + + + VG A
Sbjct: 221 SEALGLFHDMLDWGFKPDEATVVTVLPICARLGSVDVGKWIHSYAKSSGLYRDFVAVGNA 280
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+D Y K G E A+RVF +M RK+ +W +I GLA++G+G+ +++ +M+ +R +
Sbjct: 281 LVDFYNKSGMFETARRVFDEMPRKNVISWNTLISGLALNGNGELGVELLEEMMNEGVRPN 340
Query: 162 EVTYVGVLSACTH 174
+ T+VGVLS C H
Sbjct: 341 DATFVGVLSCCAH 353
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 23/164 (14%)
Query: 16 VISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 75
++S + G +N+ + A + F Q +L+ AMI GY F E+ LF M+
Sbjct: 43 ILSHFVSICGSLNK--MAYANRIFKQTQNPTIILFNAMIKGYSLNGPFEESFRLFSSMKN 100
Query: 76 SNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEK 114
I DE+T +L F + I +I++Y CG +E
Sbjct: 101 RGIWPDEYTLAPLLKACSSLGVLQLGKCMHKEVLVVGFEGFSAIRIGVIELYSSCGVMED 160
Query: 115 AQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
A++VF +M ++D W MI G G D L +F QM + S+
Sbjct: 161 AEKVFDEMYQRDVIVWNLMIHGFCKRGDVDMGLCLFRQMRKRSV 204
Score = 40.0 bits (92), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 16/119 (13%)
Query: 58 LRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEK--- 114
LR+ RE T RE+ +R +IL+ F V I CG + K
Sbjct: 13 LRLLHGRETRTQLREIHAHFLRHGLNQLNQILSHF-----VSI--------CGSLNKMAY 59
Query: 115 AQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
A R+F + + AMI G +++G + + +FS M I DE T +L AC+
Sbjct: 60 ANRIFKQTQNPTIILFNAMIKGYSLNGPFEESFRLFSSMKNRGIWPDEYTLAPLLKACS 118
>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 580
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 65/181 (35%), Positives = 92/181 (50%), Gaps = 25/181 (13%)
Query: 20 TTIVSGYINR----GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 75
T +V+G I G +D A F +MPE D W+ M+ GY + + EAL LFREMQ
Sbjct: 142 TPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEALKLFREMQA 201
Query: 76 SNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVEK 114
N+ D FT ++ + D+ +G AL+ MY KCG ++
Sbjct: 202 ENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGTALVGMYSKCGSLDN 261
Query: 115 AQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
A +VF M +D W+ MI G AI GHG+ AL +F M R+ + VT+ VLSAC+H
Sbjct: 262 ALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTFTSVLSACSH 321
Query: 175 N 175
+
Sbjct: 322 S 322
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 41/173 (23%), Positives = 70/173 (40%), Gaps = 12/173 (6%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGY-INRGQVDIARQYFAQMPERDYVLWTAMIDGYLR 59
+ +A IF + ++ W TI+ GY I+ + Y RD L + Y
Sbjct: 57 VAYAHRIFSCTHHPNLFMWNTIIRGYSISDSPITAIALY------RDMFLCGISPNSYTF 110
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119
+ L R + + V++ F + G LI +Y CG ++ A +F
Sbjct: 111 GFVLKACCKLLRLCEGQELHSQ---IVKVGLDFETPLVNG--LIKLYAACGCMDYACVMF 165
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+M D +W+ M+ G A +G AL +F +M ++ D T V+ C
Sbjct: 166 DEMPEPDSASWSTMVSGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGVC 218
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 38/164 (23%), Positives = 66/164 (40%), Gaps = 23/164 (14%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV+ T +V Y G +D A + F M ERD W+ MI GY +AL LF M+
Sbjct: 242 DVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMK 301
Query: 75 TSNIRRDEFTTVRILTTFNND--------IFVGI--------------ALIDMYCKCGDV 112
S + T +L+ ++ IF + ++D++C+ G V
Sbjct: 302 RSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMV 361
Query: 113 EKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155
A + M + + W ++ G+ D + ++L+
Sbjct: 362 GHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKDLGEHISRKILK 405
Score = 36.6 bits (83), Expect = 3.6, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 12/121 (9%)
Query: 52 AMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGD 111
+++ R R + + M +N+ +D F T +++ + + L G
Sbjct: 9 SLVAAIKRCTRVGDLKAIQAHMVRANLTQDTFLTSKLIES------SAVTL------SGH 56
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
V A R+F + F W +I G +IS TA+ ++ M I + T+ VL A
Sbjct: 57 VAYAHRIFSCTHHPNLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKA 116
Query: 172 C 172
C
Sbjct: 117 C 117
>gi|195651797|gb|ACG45366.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 544
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 65/195 (33%), Positives = 95/195 (48%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A E+F M ++ W+++V+GY G + AR F ++P R+ V W A+I GY ++
Sbjct: 202 METAREVFDRMPARNAFVWSSMVTGYFKAGDAEEARAVFDRIPTRNLVNWNALIAGYAQI 261
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
+AL F M ++ DEFT +L+ + FV
Sbjct: 262 GCSEQALEAFHLMLQERVKPDEFTMASLLSACAQLGSLEQGKKVHDFINQEHIRKNHFVM 321
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
LIDMY KCGD+ A+ +F M K+ W MI LA G D AL +F QM R+ +
Sbjct: 322 NGLIDMYAKCGDLAHARYIFDSMRWKNNECWNTMISALASHGQSDEALHLFFQMERSGRK 381
Query: 160 LDEVTYVGVLSACTH 174
+ +T + VL ACTH
Sbjct: 382 PNTITVLAVLGACTH 396
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 55/207 (26%), Positives = 90/207 (43%), Gaps = 46/207 (22%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
+D++ TTIVS Y G + AR+ F +MP+R+ + + A++ GY AL LF M
Sbjct: 89 RDLLVGTTIVSMYCKCGALADARRAFDEMPDRNVISYNALLAGYAVAGDMDGALALFGGM 148
Query: 74 QT-------------------SNIRRDEFTT---VRILTTFN------------------ 93
++ + RR T +R + T+
Sbjct: 149 RSWTHVTWATLIRGFAEKGDMAEARRWFEATPPGMRTVVTWTVLVQGYVCAGDMETAREV 208
Query: 94 ------NDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
+ FV +++ Y K GD E+A+ VF ++ ++ W A+I G A G + AL
Sbjct: 209 FDRMPARNAFVWSSMVTGYFKAGDAEEARAVFDRIPTRNLVNWNALIAGYAQIGCSEQAL 268
Query: 148 DMFSQMLRASIRLDEVTYVGVLSACTH 174
+ F ML+ ++ DE T +LSAC
Sbjct: 269 EAFHLMLQERVKPDEFTMASLLSACAQ 295
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 90 TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDM 149
+ F D+ VG ++ MYCKCG + A+R F +M ++ ++ A++ G A++G D AL +
Sbjct: 85 SAFARDLLVGTTIVSMYCKCGALADARRAFDEMPDRNVISYNALLAGYAVAGDMDGALAL 144
Query: 150 FSQM 153
F M
Sbjct: 145 FGGM 148
>gi|449467189|ref|XP_004151307.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
mitochondrial-like [Cucumis sativus]
Length = 711
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 105/192 (54%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+ +F NM KDV+SWTT++ G+ + G++D F MPE+D + WTA+I G + + +
Sbjct: 351 AVFLFENMPQKDVVSWTTLICGFASEGRIDEFIGLFQMMPEKDAIAWTAVISGLVSIEEY 410
Query: 64 REALTLFREMQTSNIRRDEFTTVRILT---------------------TFNNDIFVGIAL 102
A F +M S I+ + FT +L+ + ND+ + +L
Sbjct: 411 EIAFHWFIKMLQSVIKPNAFTLSCVLSAGASMAILNQGLQIHAIVTKMSMENDLSIQNSL 470
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+ MY KCG+V+ A ++F+ + + + +I GLA +G G AL++F++M + +
Sbjct: 471 VSMYSKCGNVDDALKMFYYIKVPNVVAYNTIITGLAQNGLGKEALEIFTKMQDDYLVPNH 530
Query: 163 VTYVGVLSACTH 174
+T++GVLSAC H
Sbjct: 531 ITFLGVLSACVH 542
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 92/176 (52%), Gaps = 21/176 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+ IF M KDV+SW++++SG G++ AR+ F +MP+R+ V WT MIDGY+++N
Sbjct: 188 AVRIFDGMAEKDVVSWSSMISGLCRVGKIVEARKLFDKMPDRNVVTWTLMIDGYMKMNFL 247
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
++ LF M+ + + T +L F+ D ++ ++
Sbjct: 248 KDGFILFLNMRREGVEVNATTLTVLLEACGSFDRYGEGIQIHGLVLSLGFDVDAYLANSI 307
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
I MY +C ++ A + F M++KD TW ++I G SG+ + A+ +F M + +
Sbjct: 308 ITMYSRCYSIDAAAKQFDLMVKKDIVTWNSLITGYVQSGNLEKAVFLFENMPQKDV 363
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 73/161 (45%), Gaps = 11/161 (6%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A IF M NK+ +SWT +++ Y +++ AR+ F ++P+ + + AMI Y R N
Sbjct: 66 AESIFNRMPNKNTVSWTALLTAYAENSEINKAREVFNKIPDPNVASYNAMITAYHRRNMV 125
Query: 64 REALTLFREMQTSN-----------IRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDV 112
EA LF M N + F L I LI+ Y K G V
Sbjct: 126 DEAFELFSSMPQRNSVSYATMITGFVHAGMFDMAEKLHREKPVIVSSNVLINGYSKVGRV 185
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
E A R+F M KD +W++MI GL G A +F +M
Sbjct: 186 EDAVRIFDGMAEKDVVSWSSMISGLCRVGKIVEARKLFDKM 226
>gi|356501900|ref|XP_003519761.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g62890-like [Glycine max]
Length = 567
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ FA ++F + D+ SW I+ G + IAR+ F QMP R+ + W+ MI GY
Sbjct: 109 LTFARQVFDEITQPDLPSWNAIIHANAKAGMIHIARKLFDQMPHRNVISWSCMIHGYASC 168
Query: 61 NRFREALTLFREMQT---SNIRRDEFTTVRI--------------LTTFNNDIFVGIALI 103
++ AL+LFR +QT S ++ +E R+ T D+ +G +LI
Sbjct: 169 GEYKAALSLFRSLQTLEGSKVQPNE-XCARLGALEHGKWVHAYIDKTGMKIDVVLGTSLI 227
Query: 104 DMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEV 163
DMY KCG + + KD W+AMI A+ G + L++F++M+ +R + V
Sbjct: 228 DMYAKCGXIFGPE--------KDVMAWSAMITAFAMHGLSEECLELFARMVNDGVRPNAV 279
Query: 164 TYVGVLSACTH 174
T+VGVL AC H
Sbjct: 280 TFVGVLCACVH 290
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 20/135 (14%)
Query: 39 FAQMPERDYVLWTAMIDGYLR--VNRFREALTLFREMQTSNIRRDEFTTVRILTTFN--- 93
+ P + +W +I R V F AL+L+ M+ + D T +L + N
Sbjct: 16 YLSYPNIESFVWNNLIRANTRNRVKSFPPALSLYLRMRHHAVLPDLHTFPFLLQSINTPH 75
Query: 94 ---------------NDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLA 138
ND FV +LI+MY G + A++VF ++ + D +W A+I A
Sbjct: 76 PGRQLHAQIFLLGLANDPFVQTSLINMYSSRGTLTFARQVFDEITQPDLPSWNAIIHANA 135
Query: 139 ISGHGDTALDMFSQM 153
+G A +F QM
Sbjct: 136 KAGMIHIARKLFDQM 150
>gi|414879404|tpg|DAA56535.1| TPA: pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 544
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 65/195 (33%), Positives = 95/195 (48%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A E+F M ++ W+++V+GY G + AR F ++P R+ V W A+I GY ++
Sbjct: 202 METAREVFDRMPARNAFVWSSMVTGYFKAGDAEEARAVFDRIPTRNLVNWNALIAGYAQI 261
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
+AL F M ++ DEFT +L+ + FV
Sbjct: 262 GCSEQALEAFHLMLQERVKPDEFTMASLLSACAQLGSLEQGKKVHDFINQEHIRKNHFVM 321
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
LIDMY KCGD+ A+ +F M K+ W MI LA G D AL +F QM R+ +
Sbjct: 322 NGLIDMYAKCGDLAHARYIFDSMRWKNNECWNTMISALASHGQSDEALHLFFQMERSGRK 381
Query: 160 LDEVTYVGVLSACTH 174
+ +T + VL ACTH
Sbjct: 382 PNTITVLAVLGACTH 396
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 55/207 (26%), Positives = 90/207 (43%), Gaps = 46/207 (22%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
+D++ TTIVS Y G + AR+ F +MP+R+ + + A++ GY AL LF M
Sbjct: 89 RDLLVGTTIVSMYCKCGALADARRAFDEMPDRNVISYNALLAGYAVAGDMDGALALFGGM 148
Query: 74 QT-------------------SNIRRDEFTT---VRILTTFN------------------ 93
++ + RR T +R + T+
Sbjct: 149 RSWTHVTWATLIRGFAEKGDMAEARRWFEATPPGMRTVVTWTVLVQGYVCAGDMETAREV 208
Query: 94 ------NDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
+ FV +++ Y K GD E+A+ VF ++ ++ W A+I G A G + AL
Sbjct: 209 FDRMPARNAFVWSSMVTGYFKAGDAEEARAVFDRIPTRNLVNWNALIAGYAQIGCSEQAL 268
Query: 148 DMFSQMLRASIRLDEVTYVGVLSACTH 174
+ F ML+ ++ DE T +LSAC
Sbjct: 269 EAFHLMLQERVKPDEFTMASLLSACAQ 295
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 90 TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDM 149
+ F D+ VG ++ MYCKCG + A+R F +M ++ ++ A++ G A++G D AL +
Sbjct: 85 SAFARDLLVGTTIVSMYCKCGALADARRAFDEMPDRNVISYNALLAGYAVAGDMDGALAL 144
Query: 150 FSQM 153
F M
Sbjct: 145 FGGM 148
>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 643
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 103/193 (53%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A EIF M ++ SW +++GYI G+++ A++ F++MP RD V W+ MI G F
Sbjct: 191 AREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSF 250
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNND---------------------IFVGIAL 102
E+ FRE+Q + + +E + +L+ + + V AL
Sbjct: 251 NESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNAL 310
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKF-TWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
IDMY +CG+V A+ VF M K +WT+MI GLA+ G G+ A+ +F++M + D
Sbjct: 311 IDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPD 370
Query: 162 EVTYVGVLSACTH 174
++++ +L AC+H
Sbjct: 371 GISFISLLHACSH 383
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 18/156 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
TT++ Y G V+ AR+ F +M + + V W A+I R N A +F +M
Sbjct: 145 TTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKM------ 198
Query: 80 RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAI 139
VR T++N ++ Y K G++E A+R+F +M +D +W+ MIVG+A
Sbjct: 199 -----LVRNHTSWN-------VMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAH 246
Query: 140 SGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
+G + + F ++ RA + +EV+ GVLSAC+ +
Sbjct: 247 NGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQS 282
>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Glycine max]
Length = 611
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 63/194 (32%), Positives = 103/194 (53%), Gaps = 22/194 (11%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
+ +F ++ + + ISWTT++SGY G+ A + F Q P R+ WTA+I G ++
Sbjct: 159 YGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYRNLFAWTALISGLVQSGN 218
Query: 63 FREALTLFREMQTSNIR----------------------RDEFTTVRILTTFNNDIFVGI 100
+A LF EM+ I + V I + + +F+
Sbjct: 219 GVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGKQMHGVVITLGYESCLFISN 278
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
ALIDMY KC D+ A+ +F +M RKD +WT++IVG A G + AL ++ +M+ A ++
Sbjct: 279 ALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQAEEALALYDEMVLAGVKP 338
Query: 161 DEVTYVGVLSACTH 174
+EVT+VG++ AC+H
Sbjct: 339 NEVTFVGLIHACSH 352
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 23/155 (14%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
T+++ Y G + A Q F +P RD V W +++ NR AL++ R + ++
Sbjct: 43 TLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTACNLSNRPHRALSISRSLLSTGFHP 102
Query: 81 DEFTTVRI-----------------------LTTFNNDIFVGIALIDMYCKCGDVEKAQR 117
D F + L+ F++D V +LIDMY K G + +
Sbjct: 103 DHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDDVVKSSLIDMYAKFGLPDYGRA 162
Query: 118 VFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
VF + + +WT MI G A SG A +F Q
Sbjct: 163 VFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQ 197
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 39/163 (23%), Positives = 58/163 (35%), Gaps = 51/163 (31%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ DV+ ++++ Y G D R F + + + WT MI GY R R EA LFR+
Sbjct: 139 DDDVVK-SSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQ 197
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA 132
N+ F WTA
Sbjct: 198 TPYRNL-------------------------------------------------FAWTA 208
Query: 133 MIVGLAISGHGDTALDMFSQMLRASIRL-DEVTYVGVLSACTH 174
+I GL SG+G A +F +M I + D + V+ AC +
Sbjct: 209 LISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACAN 251
Score = 40.4 bits (93), Expect = 0.29, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 35/73 (47%)
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L++ Y KCG ++ A ++F + R+D W +++ +S AL + +L D
Sbjct: 44 LLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTACNLSNRPHRALSISRSLLSTGFHPD 103
Query: 162 EVTYVGVLSACTH 174
+ ++ AC +
Sbjct: 104 HFVFASLVKACAN 116
>gi|302815204|ref|XP_002989284.1| hypothetical protein SELMODRAFT_129545 [Selaginella moellendorffii]
gi|300143027|gb|EFJ09722.1| hypothetical protein SELMODRAFT_129545 [Selaginella moellendorffii]
Length = 290
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 97/183 (53%), Gaps = 22/183 (12%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
+D+I+ TT+V Y G + +AR F +MPER+ V W+ +I Y + N RE+L LF M
Sbjct: 2 RDIITSTTMVDAYAQVGDLAVARAIFDEMPERNSVTWSVLISAYAK-NSGRESLRLFLRM 60
Query: 74 QTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDV 112
R +E T V +L ++ D+ +G AL+D Y KCG +
Sbjct: 61 DLEGFRAEEMTYVAVLDACSSAAAVAEGRIIHESVSDRGLGRDLRIGSALVDFYGKCGQL 120
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
E A+ +F ++ +D WTA+I A +GH AL +F +ML A I D VT V VLSAC
Sbjct: 121 ETARMIFSELPIQDVILWTALITSYAHNGHLPEALAIFREMLLAGILPDCVTIVSVLSAC 180
Query: 173 THN 175
+H
Sbjct: 181 SHG 183
>gi|224119882|ref|XP_002318186.1| predicted protein [Populus trichocarpa]
gi|222858859|gb|EEE96406.1| predicted protein [Populus trichocarpa]
Length = 537
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 63/193 (32%), Positives = 98/193 (50%), Gaps = 21/193 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F +DV+S+ ++ G++ G V AR+ F MP RD V W +I G + +
Sbjct: 178 AYKVFDESPQRDVVSYNVLIDGFVKAGDVVKARELFDLMPVRDSVSWNTIIAGCAKGDYC 237
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
EA+ LF M IR D V L+ D F+ L
Sbjct: 238 EEAIELFDFMMDLEIRPDNVALVSTLSACAQLGELEKGKKIHDYIERNAMKVDTFLSTGL 297
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+D Y KCG V+ A ++F K+ FTW AM+VGLA+ G+G+ L+ FS+M+ A ++ D
Sbjct: 298 VDFYAKCGCVDIALKIFDSSSDKNLFTWNAMLVGLAMHGYGELLLEYFSRMIEAGVKPDG 357
Query: 163 VTYVGVLSACTHN 175
++ +GVL C+H+
Sbjct: 358 ISILGVLVGCSHS 370
>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g59720, mitochondrial; Flags: Precursor
gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 638
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 65/186 (34%), Positives = 98/186 (52%), Gaps = 27/186 (14%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV ++ Y + G +D+AR+ F +MPER V W +MID +R + AL LFREMQ
Sbjct: 185 DVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQ 244
Query: 75 TSNIRRDEFTTVRILTTFNN------------------------DIFVGIALIDMYCKCG 110
S D +T +L+ D+ V +LI+MYCKCG
Sbjct: 245 RS-FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCG 303
Query: 111 DVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML--RASIRLDEVTYVGV 168
+ A++VF M ++D +W AMI+G A G + A++ F +M+ R ++R + VT+VG+
Sbjct: 304 SLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGL 363
Query: 169 LSACTH 174
L AC H
Sbjct: 364 LIACNH 369
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 24/164 (14%)
Query: 32 VDIARQYFAQMPERDYVLWTAMIDGYLR-VNRFREALTLFREM-QTSNIRRDEFTTVRIL 89
V+ A + F + +W +I V+R EA L+R+M + D+ T +L
Sbjct: 99 VNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVL 158
Query: 90 TT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
F D++V LI +Y CG ++ A++VF +M +
Sbjct: 159 KACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLV 218
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+W +MI L G D+AL +F +M R S D T VLSAC
Sbjct: 219 SWNSMIDALVRFGEYDSALQLFREMQR-SFEPDGYTMQSVLSAC 261
>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 65/186 (34%), Positives = 98/186 (52%), Gaps = 27/186 (14%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV ++ Y + G +D+AR+ F +MPER V W +MID +R + AL LFREMQ
Sbjct: 176 DVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQ 235
Query: 75 TSNIRRDEFTTVRILTTFNN------------------------DIFVGIALIDMYCKCG 110
S D +T +L+ D+ V +LI+MYCKCG
Sbjct: 236 RS-FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCG 294
Query: 111 DVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML--RASIRLDEVTYVGV 168
+ A++VF M ++D +W AMI+G A G + A++ F +M+ R ++R + VT+VG+
Sbjct: 295 SLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGL 354
Query: 169 LSACTH 174
L AC H
Sbjct: 355 LIACNH 360
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 24/164 (14%)
Query: 32 VDIARQYFAQMPERDYVLWTAMIDGYLR-VNRFREALTLFREM-QTSNIRRDEFTTVRIL 89
V+ A + F + +W +I V+R EA L+R+M + D+ T +L
Sbjct: 90 VNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVL 149
Query: 90 TT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
F D++V LI +Y CG ++ A++VF +M +
Sbjct: 150 KACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLV 209
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+W +MI L G D+AL +F +M R S D T VLSAC
Sbjct: 210 SWNSMIDALVRFGEYDSALQLFREMQR-SFEPDGYTMQSVLSAC 252
>gi|449530420|ref|XP_004172193.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
mitochondrial-like, partial [Cucumis sativus]
Length = 719
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 105/192 (54%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+ +F NM KDV+SWTT++ G+ + G++D F MPE+D + WTA+I G + + +
Sbjct: 359 AVFLFENMPQKDVVSWTTLICGFASEGRIDEFIGLFQMMPEKDAIAWTAVISGLVSIEEY 418
Query: 64 REALTLFREMQTSNIRRDEFTTVRILT---------------------TFNNDIFVGIAL 102
A F +M S I+ + FT +L+ + ND+ + +L
Sbjct: 419 EIAFHWFIKMLQSVIKPNAFTLSCVLSAGASMAILNQGLQIHAIVTKMSMENDLSIQNSL 478
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+ MY KCG+V+ A ++F+ + + + +I GLA +G G AL++F++M + +
Sbjct: 479 VSMYSKCGNVDDALKMFYYIKVPNVVAYNTIITGLAQNGLGKEALEIFTKMQDDYLVPNH 538
Query: 163 VTYVGVLSACTH 174
+T++GVLSAC H
Sbjct: 539 ITFLGVLSACVH 550
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 92/176 (52%), Gaps = 21/176 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+ IF M KDV+SW++++SG G++ AR+ F +MP+R+ V WT MIDGY+++N
Sbjct: 196 AVRIFDGMAEKDVVSWSSMISGLCRVGKIVEARKLFDKMPDRNVVTWTLMIDGYMKMNFL 255
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
++ LF M+ + + T +L F+ D ++ ++
Sbjct: 256 KDGFILFLNMRREGVEVNATTLTVLLEACGSFDRYGEGIQIHGLVLSLGFDVDAYLANSI 315
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
I MY +C ++ A + F M++KD TW ++I G SG+ + A+ +F M + +
Sbjct: 316 ITMYSRCYSIDAAAKQFDLMVKKDIVTWNSLITGYVQSGNLEKAVFLFENMPQKDV 371
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 73/161 (45%), Gaps = 11/161 (6%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A IF M NK+ +SWT +++ Y +++ AR+ F ++P+ + + AMI Y R N
Sbjct: 74 AESIFNRMPNKNTVSWTALLTAYAENSEINKAREVFNKIPDPNVASYNAMITAYHRRNMV 133
Query: 64 REALTLFREMQTSN-----------IRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDV 112
EA LF M N + F L I LI+ Y K G V
Sbjct: 134 DEAFELFSSMPQRNSVSYATMITGFVHAGMFDMAEKLHREKPVIVSSNVLINGYSKVGRV 193
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
E A R+F M KD +W++MI GL G A +F +M
Sbjct: 194 EDAVRIFDGMAEKDVVSWSSMISGLCRVGKIVEARKLFDKM 234
>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
Length = 635
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 103/193 (53%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A EIF M ++ SW +++GYI G+++ A++ F++MP RD V W+ MI G F
Sbjct: 183 AREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSF 242
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNND---------------------IFVGIAL 102
E+ FRE+Q + + +E + +L+ + + V AL
Sbjct: 243 NESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNAL 302
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKF-TWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
IDMY +CG+V A+ VF M K +WT+MI GLA+ G G+ A+ +F++M + D
Sbjct: 303 IDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPD 362
Query: 162 EVTYVGVLSACTH 174
++++ +L AC+H
Sbjct: 363 GISFISLLHACSH 375
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 18/156 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
TT++ Y G V+ AR+ F +M + + V W A+I R N A +F +M
Sbjct: 137 TTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKM------ 190
Query: 80 RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAI 139
VR T++N ++ Y K G++E A+R+F +M +D +W+ MIVG+A
Sbjct: 191 -----LVRNHTSWN-------VMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAH 238
Query: 140 SGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
+G + + F ++ RA + +EV+ GVLSAC+ +
Sbjct: 239 NGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQS 274
>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 691
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 63/183 (34%), Positives = 98/183 (53%), Gaps = 21/183 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ D + W++++ Y G +D AR F ++ E+D V WT+MID Y + +R+RE +LF E
Sbjct: 250 DSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSE 309
Query: 73 MQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGD 111
+ S R +E+T +L F+ F +L+DMY KCG+
Sbjct: 310 LVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGN 369
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+E A+ V + D +WT++I G A +G D AL F +L++ + D VT+V VLSA
Sbjct: 370 IESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSA 429
Query: 172 CTH 174
CTH
Sbjct: 430 CTH 432
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 61/191 (31%), Positives = 100/191 (52%), Gaps = 22/191 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M N+D+ SW +V+GY G ++ AR+ F +M E+D WTAM+ GY++ ++
Sbjct: 139 ARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQP 198
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT----------------------FNNDIFVGIA 101
EAL L+ MQ R TV I ++D + +
Sbjct: 199 EEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSS 258
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+DMY KCG +++A+ +F K++ KD +WT+MI S +FS+++ + R +
Sbjct: 259 LMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPN 318
Query: 162 EVTYVGVLSAC 172
E T+ GVL+AC
Sbjct: 319 EYTFAGVLNAC 329
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 39/170 (22%), Positives = 74/170 (43%), Gaps = 24/170 (14%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+++V Y G ++ A+ P+ D V WT++I G + + EAL F + S +
Sbjct: 358 SSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTK 417
Query: 80 RDEFTTVRILTTFNN--------DIFVGIA--------------LIDMYCKCGDVEKAQR 117
D T V +L+ + + F I L+D+ + G E+ +
Sbjct: 418 PDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKS 477
Query: 118 VFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYV 166
V +M ++ KF W +++ G + G+ D A + ++ + + VTYV
Sbjct: 478 VISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPE-NPVTYV 526
>gi|5280987|emb|CAB46001.1| hypothetical protein [Arabidopsis thaliana]
gi|7268109|emb|CAB78447.1| hypothetical protein [Arabidopsis thaliana]
Length = 686
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 61/179 (34%), Positives = 102/179 (56%), Gaps = 8/179 (4%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F +++ K+ ISWT +VSGY G+ + A + F +P ++ WTA+I G+++ +
Sbjct: 227 AKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKG 286
Query: 64 REALTLFREMQTSNIR-RDEFTTVRILTTFNN-------DIFVGIALIDMYCKCGDVEKA 115
EA ++F EM+ + D I+ N G ALIDMY KC DV A
Sbjct: 287 LEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGNALIDMYAKCSDVIAA 346
Query: 116 QRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+ +F +M +D +WT++IVG+A G + AL ++ M+ ++ +EVT+VG++ AC+H
Sbjct: 347 KDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSH 405
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 76/152 (50%), Gaps = 22/152 (14%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN-IR 79
T+V+ Y G A Q F +MP RD++ W +++ + N + L++F + +S+ +R
Sbjct: 111 TLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLR 170
Query: 80 RDEFTTVR---------------------ILTTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
D+F I++ + ND V +L+DMY KCG + A+ V
Sbjct: 171 PDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAV 230
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMF 150
F + K+ +WTAM+ G A SG + AL++F
Sbjct: 231 FDSIRVKNTISWTAMVSGYAKSGRKEEALELF 262
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 56/231 (24%), Positives = 89/231 (38%), Gaps = 79/231 (34%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQ---------------VDI-------------- 34
ALE+F + K++ SWT ++SG++ G+ VDI
Sbjct: 258 ALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACA 317
Query: 35 ----------------------------ARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
A+ F++M RD V WT++I G + + +A
Sbjct: 318 NLAASIAGRQVHGNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKA 377
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM---- 122
L L+ +M + ++ +E T FVG LI G VEK + +F M
Sbjct: 378 LALYDDMVSHGVKPNEVT------------FVG--LIYACSHVGFVEKGRELFQSMTKDY 423
Query: 123 -LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+R +T ++ L SG D A ++ M DE T+ +LSAC
Sbjct: 424 GIRPSLQHYTCLLDLLGRSGLLDEAENLIHTM---PFPPDEPTWAALLSAC 471
Score = 35.8 bits (81), Expect = 7.3, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISG-HGDTALDMFSQMLRASIRL 160
L+++Y KCG A +VF +M +D W +++ L + G T S + +R
Sbjct: 112 LVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRP 171
Query: 161 DEVTYVGVLSACTH 174
D+ + ++ AC +
Sbjct: 172 DDFVFSALVKACAN 185
>gi|7488184|pir||E71401 probable selenium-binding protein - Arabidopsis thaliana
Length = 1070
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 61/179 (34%), Positives = 102/179 (56%), Gaps = 8/179 (4%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F +++ K+ ISWT +VSGY G+ + A + F +P ++ WTA+I G+++ +
Sbjct: 96 AKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKG 155
Query: 64 REALTLFREMQTSNIR-RDEFTTVRILTTFNN-------DIFVGIALIDMYCKCGDVEKA 115
EA ++F EM+ + D I+ N G ALIDMY KC DV A
Sbjct: 156 LEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGNALIDMYAKCSDVIAA 215
Query: 116 QRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+ +F +M +D +WT++IVG+A G + AL ++ M+ ++ +EVT+VG++ AC+H
Sbjct: 216 KDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSH 274
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 22/131 (16%)
Query: 42 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN-IRRDEFTTVR------------- 87
MP RD++ W +++ + N + L++F + +S+ +R D+F
Sbjct: 1 MPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDH 60
Query: 88 --------ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAI 139
I++ + ND V +L+DMY KCG + A+ VF + K+ +WTAM+ G A
Sbjct: 61 GRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAK 120
Query: 140 SGHGDTALDMF 150
SG + AL++F
Sbjct: 121 SGRKEEALELF 131
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 56/231 (24%), Positives = 89/231 (38%), Gaps = 79/231 (34%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQ---------------VDI-------------- 34
ALE+F + K++ SWT ++SG++ G+ VDI
Sbjct: 127 ALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACA 186
Query: 35 ----------------------------ARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
A+ F++M RD V WT++I G + + +A
Sbjct: 187 NLAASIAGRQVHGNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKA 246
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM---- 122
L L+ +M + ++ +E T FVG LI G VEK + +F M
Sbjct: 247 LALYDDMVSHGVKPNEVT------------FVG--LIYACSHVGFVEKGRELFQSMTKDY 292
Query: 123 -LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+R +T ++ L SG D A ++ M DE T+ +LSAC
Sbjct: 293 GIRPSLQHYTCLLDLLGRSGLLDEAENLIHTM---PFPPDEPTWAALLSAC 340
>gi|242045336|ref|XP_002460539.1| hypothetical protein SORBIDRAFT_02g030160 [Sorghum bicolor]
gi|241923916|gb|EER97060.1| hypothetical protein SORBIDRAFT_02g030160 [Sorghum bicolor]
Length = 630
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 66/194 (34%), Positives = 103/194 (53%), Gaps = 22/194 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+ IF +M+ + ++SW +++ Y+ G V+ A F +PE + + WTAMI G R
Sbjct: 259 AVRIFESMEVQTIVSWNSLIDAYMKLGCVEKATSLFGSVPETNVISWTAMIGGLARNGLA 318
Query: 64 REALTLFREMQT-SNIRRDEFTTVRIL---------------------TTFNNDIFVGIA 101
EAL LF EM +I D+FT +L + F + ++V +
Sbjct: 319 DEALILFVEMLAHEHIHPDDFTFGAVLHACATAASLASGRMVHCRVFQSGFVSYLYVANS 378
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMY KCGD+E VF ++ KD +W M+ G AI+G + AL ++ M + D
Sbjct: 379 LIDMYAKCGDLEGGTNVFSTIVNKDLVSWNTMLFGFAINGLPNEALVVYDSMKSHDVCPD 438
Query: 162 EVTYVGVLSACTHN 175
EVT+ G+L+AC+H+
Sbjct: 439 EVTFTGLLTACSHS 452
Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 60/222 (27%), Positives = 92/222 (41%), Gaps = 53/222 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A FG M+ ++ +SW +++ Y+ + +A++ F +MP R+ V W ++ GY R
Sbjct: 127 AARAFGEMRERNALSWCSLLDAYVASDDLRLAQELFDEMPNRNNVAWNTLLMGYSRSGNA 186
Query: 64 REALTLFREMQTSNIRRDEFT--------------------------------------- 84
L LF +M+ + + D+ T
Sbjct: 187 NHCLLLFNKMRMAGLTCDDATLCILVDACTELANPSAGSAIHKIVVQSGWNAMAEVSNSL 246
Query: 85 ------------TVRILTTFNNDIFVGI-ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWT 131
VRI + V +LID Y K G VEKA +F + + +WT
Sbjct: 247 ISLYTKFSLLDDAVRIFESMEVQTIVSWNSLIDAYMKLGCVEKATSLFGSVPETNVISWT 306
Query: 132 AMIVGLAISGHGDTALDMFSQML-RASIRLDEVTYVGVLSAC 172
AMI GLA +G D AL +F +ML I D+ T+ VL AC
Sbjct: 307 AMIGGLARNGLADEALILFVEMLAHEHIHPDDFTFGAVLHAC 348
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 50/210 (23%), Positives = 81/210 (38%), Gaps = 56/210 (26%)
Query: 16 VISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 75
+++ T+ ++ G AR F MP RD V W AM+ Y R + R+AL LF
Sbjct: 11 LVAATSRIASLGRAGDAASARAVFDAMPRRDAVAWNAMLTAYARAGQPRDALALFSRAPA 70
Query: 76 SNIRRDEFTT--------------------VRILTTFNNDIF-VGIALIDMYCKCGDVEK 114
D F+ R+L + VG +LI MY KC E
Sbjct: 71 P----DAFSLTAALSAAAALRSPTAGAQLHARLLRVGLRALLPVGNSLISMYAKCARAED 126
Query: 115 AQRVFWKMLRKDKFTWTA-------------------------------MIVGLAISGHG 143
A R F +M ++ +W + +++G + SG+
Sbjct: 127 AARAFGEMRERNALSWCSLLDAYVASDDLRLAQELFDEMPNRNNVAWNTLLMGYSRSGNA 186
Query: 144 DTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+ L +F++M A + D+ T ++ ACT
Sbjct: 187 NHCLLLFNKMRMAGLTCDDATLCILVDACT 216
>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 64/192 (33%), Positives = 107/192 (55%), Gaps = 22/192 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M ++V+S+T ++ GY G + AR F + PE+D V W+A+I GY R +
Sbjct: 221 ARKVFDEMVERNVVSFTVMIDGYAKVGDMASARALFDEAPEKDVVAWSALISGYSRNEQP 280
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTF----NNDI------------------FVGIA 101
EA+ +F EM + N++ DEF V +++ N+D+ V A
Sbjct: 281 NEAVKIFFEMVSMNVKPDEFIMVSLMSACSQLGNSDLAKWVDSYLSQTSIDTRQAHVLAA 340
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDM+ KCG++EKA ++F M +D ++I GL+I G G A+++F++ML + D
Sbjct: 341 LIDMHAKCGNMEKAVKLFQDMPSRDLIPCCSLIQGLSIHGRGVEAVELFNRMLDEGLIPD 400
Query: 162 EVTYVGVLSACT 173
V + +L+AC+
Sbjct: 401 TVAFTVILTACS 412
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 51/171 (29%), Positives = 89/171 (52%), Gaps = 18/171 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F + ++V+SWT +V+GY + G ++ A++ F +MPER+ W AMI G +
Sbjct: 159 ARKVFDEIPERNVVSWTAMVAGYASVGDLENAKRVFERMPERNLPSWNAMISGLGKAGDL 218
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
A +F EM N+ FT +ID Y K GD+ A+ +F +
Sbjct: 219 SGARKVFDEMVERNVV--SFTV----------------MIDGYAKVGDMASARALFDEAP 260
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
KD W+A+I G + + + A+ +F +M+ +++ DE V ++SAC+
Sbjct: 261 EKDVVAWSALISGYSRNEQPNEAVKIFFEMVSMNVKPDEFIMVSLMSACSQ 311
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 36/156 (23%), Positives = 71/156 (45%), Gaps = 15/156 (9%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ ++ IF + N + ++ + Q F +M + +Y A+ D Y
Sbjct: 54 VSYSTSIFNRLLNPSTFLYNILLKIFSKNSQFIDTFSLFYRMKQSEY----ALSDKY--- 106
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVR---ILTTFNNDIFVGIALIDMYCKCGDVEKAQR 117
L ++ ++ +R E V I ++D++VG +LI Y KC ++ A++
Sbjct: 107 -----TYPLLIKVCSNELRLKEGEIVHGSAIRCGVSDDVYVGSSLISFYGKCKEILSARK 161
Query: 118 VFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
VF ++ ++ +WTAM+ G A G + A +F +M
Sbjct: 162 VFDEIPERNVVSWTAMVAGYASVGDLENAKRVFERM 197
>gi|357483883|ref|XP_003612228.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513563|gb|AES95186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 665
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 67/207 (32%), Positives = 101/207 (48%), Gaps = 41/207 (19%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M ++D++SW +++ GY+ G + A + F MPER+ V W +I GY + A
Sbjct: 194 MFDGMVSRDLVSWNSMIDGYVKVGDLSAAHKLFDVMPERNLVTWNCLISGYSKGRNPGYA 253
Query: 67 LTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDM 105
L LFREM IR + T V +T + + + ALIDM
Sbjct: 254 LKLFREMGRLRIRENARTMVCAVTACGRSGRLKEGKSVHGSMIRLFMRSSLILDTALIDM 313
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML----------- 154
YCKCG VE A +VF +M ++ +W AMI+G I G+ + L +F M+
Sbjct: 314 YCKCGRVEAASKVFERMSSRNLVSWNAMILGHCIHGNPEDGLSLFDLMVGMERVKGEVEV 373
Query: 155 -------RASIRL--DEVTYVGVLSAC 172
R +RL DE+T++G+L AC
Sbjct: 374 DESSSADRGLVRLLPDEITFIGILCAC 400
>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
Length = 694
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 107/193 (55%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F ++DV+S+T +++GY++RG ++ A++ F ++P +D V W AMI GY+ +
Sbjct: 143 ARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNY 202
Query: 64 REALTLFRE-MQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIA 101
+EAL LF+E M +N+R DE T V +++ F +++ + A
Sbjct: 203 KEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNA 262
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LID+Y K G+VE A +F + KD +W +I G AL +F +MLR+ +
Sbjct: 263 LIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPN 322
Query: 162 EVTYVGVLSACTH 174
+VT + +L AC H
Sbjct: 323 DVTMLSILPACAH 335
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 92/175 (52%), Gaps = 25/175 (14%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT 85
Y G+V+ A + F + +D + W +I GY +N ++EAL LF+EM S ++ T
Sbjct: 267 YSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTM 326
Query: 86 VRILTT---------------FNNDIFVGI---------ALIDMYCKCGDVEKAQRVF-W 120
+ IL + N G+ +LIDMY KCGD++ AQ+VF
Sbjct: 327 LSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDS 386
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
M + TW AMI G A+ G + A D+FS+M I D++T+VG+LSAC+H+
Sbjct: 387 SMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHS 441
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 87/207 (42%), Gaps = 46/207 (22%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
+A+ +F ++ +++ W T+ G+ + P L+ MI L +
Sbjct: 41 YAISVFDTIQEPNLLIWNTMFRGHA-----------LSSDPVSALKLYLVMISLGLLPDS 89
Query: 63 FREALTLFREMQTSNIRRD--EFTTVRILTTFNNDIFVGIALIDMYCKCGD--------- 111
+ L + S IR++ + + F+ DI+V +LI MY + G
Sbjct: 90 YTFPF-LLKSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFD 148
Query: 112 ----------------------VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDM 149
+E AQ++F ++ KD +W AMI G +G+ AL++
Sbjct: 149 ISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALEL 208
Query: 150 FSQ-MLRASIRLDEVTYVGVLSACTHN 175
F + M+ ++R DE T V V+SAC +
Sbjct: 209 FKEMMMMTNVRPDESTMVTVVSACAQS 235
>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g23330
gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 715
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 105/183 (57%), Gaps = 21/183 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ DV +++V Y +++ + + F+++ RD + W +++ GY++ R+ EAL LFR+
Sbjct: 274 DSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQ 333
Query: 73 MQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGD 111
M T+ ++ ++ F ++IF+ AL+DMY KCG+
Sbjct: 334 MVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGN 393
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
++ A+++F +M D+ +WTA+I+G A+ GHG A+ +F +M R ++ ++V +V VL+A
Sbjct: 394 IKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTA 453
Query: 172 CTH 174
C+H
Sbjct: 454 CSH 456
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 86/164 (52%), Gaps = 21/164 (12%)
Query: 32 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT 91
+D R+ F MP +D V + +I GY + + +AL + REM T++++ D FT +L
Sbjct: 192 IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPI 251
Query: 92 F---------------------NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTW 130
F ++D+++G +L+DMY K +E ++RVF ++ +D +W
Sbjct: 252 FSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISW 311
Query: 131 TAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+++ G +G + AL +F QM+ A ++ V + V+ AC H
Sbjct: 312 NSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAH 355
>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 792
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 63/176 (35%), Positives = 92/176 (52%), Gaps = 21/176 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T + + Y +++ AR+ F + PE+ W AMI GY + +A++LFREMQ S
Sbjct: 358 TALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFS 417
Query: 80 RDEFTTVRIL---------------------TTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
+ T IL T F + I+V ALI MY KCG + +A+R+
Sbjct: 418 PNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRL 477
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
F M +K++ TW MI G + GHG AL +FS+ML + I VT++ VL AC+H
Sbjct: 478 FDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSH 533
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 48/178 (26%), Positives = 84/178 (47%), Gaps = 24/178 (13%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-QTSNI 78
+ IV Y +V+ AR+ F +MPE+D +LW MI GY + + E++ +FR++ S
Sbjct: 158 SNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCT 217
Query: 79 RRDEFTTVRILTT----------------------FNNDIFVGIALIDMYCKCGDVEKAQ 116
R D T + IL +++D +V I +Y KCG ++ A
Sbjct: 218 RLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHD-YVLTGFISLYSKCGKIKMAS 276
Query: 117 RVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+F + R D + AMI G +G + +L +F +++ + +L T V ++ H
Sbjct: 277 TLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGH 334
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 18/173 (10%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T +S Y G++ +A F + D V + AMI GY +L+LF+E+ S +
Sbjct: 260 TGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAK 319
Query: 80 RDEFTTVRIL------------------TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWK 121
T V ++ + F + V AL +Y K ++E A+++F +
Sbjct: 320 LKSSTLVSLVPVSGHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDE 379
Query: 122 MLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
K +W AMI G +G + A+ +F +M + + VT +LSAC
Sbjct: 380 SPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQ 432
>gi|357521772|ref|XP_003612377.1| Selenium binding protein-like protein [Medicago truncatula]
gi|355513712|gb|AES95335.1| Selenium binding protein-like protein [Medicago truncatula]
Length = 611
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 69/185 (37%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
N +VI T IV Y G +++AR+ F +MPER+ V W MI+ Y + R+ EAL LF
Sbjct: 247 NSNVILATAIVEMYAKCGWLNVARELFNKMPERNIVAWNCMINAYNQYERYNEALGLFFY 306
Query: 73 MQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIALIDMYCKCGD 111
M + D+ T + +L + DI + AL+DMY K G+
Sbjct: 307 MLANGFCPDKATFLSVLSVCARRCVLALGETVHAYLLKSNMAKDIALATALLDMYAKNGE 366
Query: 112 VEKAQRVFWKML-RKDKFTWTAMIVGLAISGHGDTALDMFSQMLR-ASIRLDEVTYVGVL 169
+ AQ++F L +KD WT+MI LAI GHG+ AL +F M +S+ D +TY+GVL
Sbjct: 367 LGSAQKIFNNSLEKKDVVMWTSMINALAIHGHGNEALSLFQIMQEDSSLVPDHITYIGVL 426
Query: 170 SACTH 174
AC+H
Sbjct: 427 FACSH 431
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL----- 89
A F Q+ + ++ +MI GY + N +L L+++M + D FT +L
Sbjct: 60 ANLLFRQIHSPNVYIFNSMIKGYAKSNNPTMSLHLYKQMLQNGYSPDHFTFPFVLKACSF 119
Query: 90 ----------------TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
+ F +++V L++MY +C ++E +VF K+ + + WT +
Sbjct: 120 IYDQVSGKCVHSCILKSGFEANVYVATGLLNMYVECKNMESGLKVFDKIPKWNVVAWTCL 179
Query: 134 IVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
I G I+ AL++F +M R + +EVT V L AC
Sbjct: 180 INGYVINDQPREALEVFKEMGRWGVEANEVTMVNALIAC 218
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 44/179 (24%), Positives = 79/179 (44%), Gaps = 17/179 (9%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLW------TAMI 54
M L++F + +V++WT +++GY+ Q A + F +M W M+
Sbjct: 158 MESGLKVFDKIPKWNVVAWTCLINGYVINDQPREALEVFKEMGR-----WGVEANEVTMV 212
Query: 55 DGYLRVNRFREALT-LFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVE 113
+ + R R+ T + + D F N+++ + A+++MY KCG +
Sbjct: 213 NALIACARCRDVDTGRWVHERVCKAGYDPFVFAS-----NSNVILATAIVEMYAKCGWLN 267
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
A+ +F KM ++ W MI + AL +F ML D+ T++ VLS C
Sbjct: 268 VARELFNKMPERNIVAWNCMINAYNQYERYNEALGLFFYMLANGFCPDKATFLSVLSVC 326
>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 725
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 103/196 (52%), Gaps = 21/196 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A+E F M +++ T +VSGY G++D AR F Q +D V WT MI Y
Sbjct: 266 MDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAES 325
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
+ +EAL +F EM S I+ D T + +++ + + +
Sbjct: 326 DHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLNGLESVLPID 385
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALI+MY KCG ++ A+ VF KM ++ +W++MI A+ G +L +F+QM + ++
Sbjct: 386 NALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVE 445
Query: 160 LDEVTYVGVLSACTHN 175
+EVT+VGVL C+H+
Sbjct: 446 PNEVTFVGVLYGCSHS 461
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 90/225 (40%), Gaps = 55/225 (24%)
Query: 2 GFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVN 61
GFA +I D T ++ Y G+++ AR F +M +RD V W MI+ Y R
Sbjct: 138 GFAFKI---ATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFG 194
Query: 62 RFREALTLFREMQTSNIRRDEFTTVRILTT-----------------FNNDI-------- 96
EA LF EM+ SN+ DE I++ ND+
Sbjct: 195 LLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLT 254
Query: 97 ---------------------------FVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT 129
FV A++ Y K G ++ A+ +F + KD
Sbjct: 255 ALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVC 314
Query: 130 WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
WT MI A S H AL +F +M + I+ D VT + V+SAC +
Sbjct: 315 WTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVN 359
>gi|297741134|emb|CBI31865.3| unnamed protein product [Vitis vinifera]
Length = 573
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 91/162 (56%), Gaps = 21/162 (12%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN 94
AR+ F ++P+RD V WT++I G ++ + +++L LF +MQ S + D +L+ +
Sbjct: 257 ARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACAS 316
Query: 95 ---------------------DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
DI +G AL+DMY KCG +E A +F + ++ FTW A+
Sbjct: 317 LGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNAL 376
Query: 134 IVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
+ GLA+ GHG AL F M+ A IR +EVT++ +L+AC H+
Sbjct: 377 LGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHS 418
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 24/160 (15%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT--- 91
A + F +M RD V WT +I GY+R F EA+ LF +M ++ + T V +L
Sbjct: 159 AGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFLKM---DVVPNVATFVSVLVACGR 215
Query: 92 ------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
F + VG AL+DMY KC + +A+++F ++ +D +WT++
Sbjct: 216 MGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSI 275
Query: 134 IVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
I GL +L++F M + + D + VLSAC
Sbjct: 276 ISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACA 315
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 81 DEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAIS 140
++ V + F D++V +L+ Y CG A RVF +ML +D +WT +I G +
Sbjct: 125 EQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRT 184
Query: 141 GHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
G D A+++F L+ + + T+V VL AC
Sbjct: 185 GLFDEAINLF---LKMDVVPNVATFVSVLVAC 213
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 24/162 (14%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ T +V Y G +++A F +P R+ W A++ G EAL F M
Sbjct: 338 DIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMI 397
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKD-KFT---- 129
+ IR +E T + ILT C G V + + F++M+ + F+
Sbjct: 398 GAGIRPNEVTFLAILTAC--------------CHSGLVAEGRSYFYQMISQPFNFSPRLE 443
Query: 130 -WTAMIVGLAISGHGDTALD----MFSQMLRASIRLDEVTYV 166
+ MI L +G D A + + S + + R D+VT V
Sbjct: 444 HYGCMIDLLCRAGLLDEAYNGVYVLLSNIYATNERWDDVTRV 485
>gi|302764412|ref|XP_002965627.1| hypothetical protein SELMODRAFT_85102 [Selaginella moellendorffii]
gi|300166441|gb|EFJ33047.1| hypothetical protein SELMODRAFT_85102 [Selaginella moellendorffii]
Length = 290
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 96/183 (52%), Gaps = 22/183 (12%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
+D+I+ TT+V Y G + +AR F +MPER+ V W+ +I Y + N RE+L LF M
Sbjct: 2 RDIITSTTMVDAYAQLGDLAVARAIFDEMPERNSVTWSVLISAYGK-NNGRESLRLFLRM 60
Query: 74 QTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDV 112
R +E T V +L + D+ +G AL+D Y KCG +
Sbjct: 61 DLEGFRAEEMTYVAVLDACSSAAAVAEGRIIHESVLDRGLSRDLRIGSALVDFYGKCGQL 120
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
E A+ +F ++ +D WTA+I A +GH AL +F +ML A I D VT V VLSAC
Sbjct: 121 ETARLIFSELPIQDVILWTALITSYAHNGHLPEALAIFREMLLAGILPDCVTIVSVLSAC 180
Query: 173 THN 175
+H
Sbjct: 181 SHG 183
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
++D+ + +V Y GQ++ AR F+++P +D +LWTA+I Y EAL +FRE
Sbjct: 101 SRDLRIGSALVDFYGKCGQLETARLIFSELPIQDVILWTALITSYAHNGHLPEALAIFRE 160
Query: 73 MQTSNIRRDEFTTVRILTTFNN 94
M + I D T V +L+ ++
Sbjct: 161 MLLAGILPDCVTIVSVLSACSH 182
>gi|359472798|ref|XP_002274984.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 324
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 97/188 (51%), Gaps = 24/188 (12%)
Query: 11 MKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 70
M +K+ ++W T+++ Y G V AR F QMP RD W+AM+ GY+ + L LF
Sbjct: 1 MPHKNTVTWNTMITAYSKSGDVKKARLVFEQMPLRDLASWSAMVAGYMYGGEWHSGLALF 60
Query: 71 REMQTS-NIRRDEFTTVRILT-------------------TFNN----DIFVGIALIDMY 106
REM + +R D+ T +L+ T N + +G L+DMY
Sbjct: 61 REMVVNEGLRPDKVTLGSVLSGCARMGSLGLLVGRSIHGFTAKNGWELSVDLGTVLVDMY 120
Query: 107 CKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYV 166
KCG ++ A RVF M K+ +WTA+I G A G+G AL MF M ++ +E+T+
Sbjct: 121 AKCGFLKSAFRVFDLMQEKNVASWTALICGSAQHGYGKEALSMFELMQDMGVKPNEMTFT 180
Query: 167 GVLSACTH 174
G+LSAC
Sbjct: 181 GILSACAQ 188
>gi|255578286|ref|XP_002530010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530489|gb|EEF32372.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 487
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 103/198 (52%), Gaps = 24/198 (12%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
MG A +F M +D++SWT ++ G +N V+ + F QMPER+ V WT MI GY+
Sbjct: 181 MGEAKGVFSEMGERDIVSWTALLEGVVNWEGVENGKVVFDQMPERNEVGWTIMISGYVGS 240
Query: 61 NRFREALTLFREM---------------------QTSNIRRDEFTTVRILTTFNN--DIF 97
+E L EM Q+ ++ + V L D+
Sbjct: 241 GFCKEGFLLLSEMVLGLRLELNYVTLCSILSACAQSGDVVMGRWVHVYALKKMGREIDMM 300
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
VG ALIDMY KCG ++ A VF + R++ W A++ GLA+ G G L +F +M++ +
Sbjct: 301 VGTALIDMYAKCGRIKMAYEVFKYLPRRNVVAWNAILGGLAMHGKGRIVLVIFPKMIQET 360
Query: 158 IRLDEVTYVGVLSACTHN 175
+ D++T++ VLSAC+H+
Sbjct: 361 -KPDDLTFIAVLSACSHS 377
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 24/136 (17%)
Query: 26 YINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLR-VNRFREALTLFREMQTSNIRRDE 82
Y G A F Q+P +D WT+++ + + R A +LF EM+ + D+
Sbjct: 71 YSQCGITRYAHHLFDQIPNSHKDTADWTSLLSCLAKHTSTPRNAFSLFEEMRKRGVILDD 130
Query: 83 FTTVRILT---------------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWK 121
V + + F ++ V A++++Y KC + +A+ VF +
Sbjct: 131 VAFVCVFSLCARVGNLEMGRQAHGCVVKMGFGINVKVCNAVMNVYVKCRLMGEAKGVFSE 190
Query: 122 MLRKDKFTWTAMIVGL 137
M +D +WTA++ G+
Sbjct: 191 MGERDIVSWTALLEGV 206
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 15/117 (12%)
Query: 70 FREMQTSNIRRDEFTTVR-----ILTT---FNNDIFVGIALIDMYCKCGDVEKAQRVFWK 121
R + S R +T + +LTT + + F+ AL+ +Y +CG A +F +
Sbjct: 27 LRSLLRSCARESSLSTGKKLHAILLTTGVATSPNAFLLNALLHLYSQCGITRYAHHLFDQ 86
Query: 122 ML--RKDKFTWTAMIVGLAISGHGDT---ALDMFSQMLRASIRLDEVTYVGVLSACT 173
+ KD WT+++ LA H T A +F +M + + LD+V +V V S C
Sbjct: 87 IPNSHKDTADWTSLLSCLA--KHTSTPRNAFSLFEEMRKRGVILDDVAFVCVFSLCA 141
>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 743
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 102/192 (53%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A IF + K+++ + T+++G + + A Q F MPE+D + WT +I G + F
Sbjct: 192 ANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLF 251
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
+EA+ F+EM D+FT +LT + ++IFVG AL
Sbjct: 252 KEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSAL 311
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMYCKC +V+ A+ VF KM K+ +WTAM+VG +G+ + A+ +F M R I D+
Sbjct: 312 LDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDD 371
Query: 163 VTYVGVLSACTH 174
T V+S+C +
Sbjct: 372 FTLGSVISSCAN 383
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 21/175 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+ ++ Y V A F +M ++ + WTAM+ GY + EA+ +F +MQ + I
Sbjct: 309 SALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIH 368
Query: 80 RDEFTTVRILTTFNND---------------------IFVGIALIDMYCKCGDVEKAQRV 118
D+FT ++++ N + V ALI +Y KCG +E A ++
Sbjct: 369 PDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQL 428
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
F +M +D+ +WTA++ G A G + + +F ML I D VT+VGVLSAC+
Sbjct: 429 FHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACS 483
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 94/222 (42%), Gaps = 53/222 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F ++ ++ SW T++S Y G + ++ F MP D V W +++ GY
Sbjct: 59 ARNVFDHIPQPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLI 118
Query: 64 REALTLFREM---QTSNIRRDEFTTVRILTT-------------------FNNDIFVGIA 101
E++ ++ M + N+ R F+T+ IL++ + + +FVG
Sbjct: 119 SESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSP 178
Query: 102 LIDMYCKCGDVEKAQRVFWK-------------------------------MLRKDKFTW 130
L+DMY K G + A R+F + M KD +W
Sbjct: 179 LVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISW 238
Query: 131 TAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
T +I GL +G A+D F +M +D+ T+ VL+AC
Sbjct: 239 TTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTAC 280
>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1182
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 105/193 (54%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F + ++D SW T++ Y+ G + +A++ F +M ERD V W+ +I GY++V F
Sbjct: 332 ARNVFDSAVDRDFYSWNTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCF 391
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVG---------------------IAL 102
EAL F +M S ++ +E+T V L +N + + +L
Sbjct: 392 MEALDFFHKMLQSEVKPNEYTMVSALAACSNLVALDQGKWIHVYIRRDNIKMNDRLLASL 451
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDK-FTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
IDMY KCG+++ A VF + K K + W AMI G A+ G + A+++F +M + +
Sbjct: 452 IDMYAKCGEIDSASSVFHEHKVKRKVWPWNAMIGGFAMHGKPEEAINVFEKMKVEKVSPN 511
Query: 162 EVTYVGVLSACTH 174
+VT++ +L+AC+H
Sbjct: 512 KVTFIALLNACSH 524
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 54/194 (27%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGY-LRVNRFREALTLFREMQTSN---------------- 77
A + F Q+P+ D ++ MI + + + + +++ +FR + +
Sbjct: 229 AHKLFDQIPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVFAFGAC 288
Query: 78 -----IRRDEFT-TVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWT 131
+R E T + + ++FV ALI M+ K G VE A+ VF + +D ++W
Sbjct: 289 GNGMCVREGEQVFTHAVKVGLDGNVFVVNALIGMFGKWGRVEDARNVFDSAVDRDFYSWN 348
Query: 132 AMIVGLAISGHGD-------------------------------TALDMFSQMLRASIRL 160
MI SG+ ALD F +ML++ ++
Sbjct: 349 TMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQSEVKP 408
Query: 161 DEVTYVGVLSACTH 174
+E T V L+AC++
Sbjct: 409 NEYTMVSALAACSN 422
>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 679
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 70/223 (31%), Positives = 104/223 (46%), Gaps = 52/223 (23%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
AL++F M +D SWT +V G G+V+ AR+ F QMP R+ V W AMI+GY++ F
Sbjct: 197 ALQLFEEMPERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDF 256
Query: 64 REALTLFREMQTSNI-------------------------------RRDEFTTVRILTT- 91
AL LF +M ++ R T V +L+
Sbjct: 257 DSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAV 316
Query: 92 --------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWT 131
F D +G +LI+MY KCG +E A VF + +K WT
Sbjct: 317 SGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWT 376
Query: 132 AMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
A+IVGL I G + AL +F +M + ++ + + ++GVL+AC H
Sbjct: 377 AIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNH 419
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 59/170 (34%), Positives = 87/170 (51%), Gaps = 18/170 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +KDV+ W +++ GY G++DIA Q F +MPERD WT ++DG + +
Sbjct: 166 ARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMPERDAFSWTVLVDGLSKCGKV 225
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
A LF +M N L ++N A+I+ Y K GD + A +F++M
Sbjct: 226 ESARKLFDQMPCRN-----------LVSWN-------AMINGYMKSGDFDSALELFYQMP 267
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
D TW MI G ++G A+ MF ML+ R T V VLSA +
Sbjct: 268 IWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVS 317
Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 57/153 (37%), Positives = 81/153 (52%), Gaps = 23/153 (15%)
Query: 2 GFALEI-FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
G AL+I FG+ DV ++V+ Y G++D AR+ F M ++D VLW ++IDGY R
Sbjct: 136 GLALKIGFGS----DVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARC 191
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
AL LF EM RD F+ L+D KCG VE A+++F
Sbjct: 192 GEIDIALQLFEEMP----ERDAFSWT--------------VLVDGLSKCGKVESARKLFD 233
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+M ++ +W AMI G SG D+AL++F QM
Sbjct: 234 QMPCRNLVSWNAMINGYMKSGDFDSALELFYQM 266
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 13/154 (8%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G+A IF ++ + +I W TI+ Y+ Q VL+ ++ YL
Sbjct: 63 LGYARSIFDRIQRRSLIHWNTIIKCYVEN-----------QFSHDGIVLFHELVHEYLPD 111
Query: 61 NRFREALTLFREMQTSNIRR-DEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119
N F + + ++ + + + F +D+FV +L++MY KCG+++ A++VF
Sbjct: 112 N-FTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVF 170
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
M+ KD W ++I G A G D AL +F +M
Sbjct: 171 DGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEM 204
>gi|255576546|ref|XP_002529164.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531388|gb|EEF33223.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 453
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 106/195 (54%), Gaps = 24/195 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F M +D+ SW T+++G+I ++ +AR+ +MPE++ V WT MI GY++
Sbjct: 205 AFELFERMPERDLPSWNTMITGFIQNKELKLARKLLDEMPEKNVVSWTTMITGYVQEGES 264
Query: 64 REALTLFREM-QTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIA 101
AL +F EM + + +E T V +L T + + FV A
Sbjct: 265 EAALNIFMEMIRDGGVMPNEGTFVNVLGACSDLAGLGEGQQVHQMISKTVYQDMPFVVSA 324
Query: 102 LIDMYCKCGDVEKAQRVF--WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
LI+MY KCG+++ A+++F ++D +W M+ A G G A+++F++M
Sbjct: 325 LINMYSKCGELDMARKMFDNRTTSQRDLVSWNCMVAAYAHHGCGKEAINLFNEMRALGFE 384
Query: 160 LDEVTYVGVLSACTH 174
D+++YVG+LSAC+H
Sbjct: 385 PDDISYVGLLSACSH 399
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 91/171 (53%), Gaps = 19/171 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M +DVISWT +V+G G++D AR+ F +MPER+ V W AMI GY + R
Sbjct: 143 ARRLFDEMPKRDVISWTAMVAGLARNGRIDEARKIFDKMPERNVVSWNAMITGYAKNMRL 202
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
EA LF M R L ++N +I + + +++ A+++ +M
Sbjct: 203 VEAFELFERMPE-----------RDLPSWN-------TMITGFIQNKELKLARKLLDEMP 244
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLR-ASIRLDEVTYVGVLSACT 173
K+ +WT MI G G + AL++F +M+R + +E T+V VL AC+
Sbjct: 245 EKNVVSWTTMITGYVQEGESEAALNIFMEMIRDGGVMPNEGTFVNVLGACS 295
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 11/129 (8%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G+++ ARQ F +M ERD + WT +I GY++ EA LF R D V
Sbjct: 69 GKINEARQVFDRMLERDVITWTTVITGYIKCRLIVEARRLFD-------RADAMKNVVTW 121
Query: 90 TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDM 149
T + G ++ + V++A+R+F +M ++D +WTAM+ GLA +G D A +
Sbjct: 122 TA----MVSGYMRLNQVLEAERVDEARRLFDEMPKRDVISWTAMVAGLARNGRIDEARKI 177
Query: 150 FSQMLRASI 158
F +M ++
Sbjct: 178 FDKMPERNV 186
>gi|297723953|ref|NP_001174340.1| Os05g0313600 [Oryza sativa Japonica Group]
gi|222631076|gb|EEE63208.1| hypothetical protein OsJ_18018 [Oryza sativa Japonica Group]
gi|255676232|dbj|BAH93068.1| Os05g0313600 [Oryza sativa Japonica Group]
Length = 620
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 63/182 (34%), Positives = 98/182 (53%), Gaps = 22/182 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D + + +V Y G++ AR+ F + ++D V W AMI GY + EA++LF M+
Sbjct: 264 DSLVGSALVGMYEKCGEIAEARRVFDSIIDKDVVAWNAMITGYAQNGMSNEAISLFHNMK 323
Query: 75 TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVE 113
+ + D+ T +L+ N+++VG AL+DMY KCGD++
Sbjct: 324 KAGVCPDKITLAGVLSACSAVGALELGSELDGYASCRGLYNNVYVGTALVDMYAKCGDLD 383
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS-IRLDEVTYVGVLSAC 172
KA VF KM K+ +W A+I GLA +G GD A+ F M ++ D++T++GVLSAC
Sbjct: 384 KAIEVFRKMRCKNVASWNALICGLAFNGQGDEAIQHFELMRNEDGLKPDDITFIGVLSAC 443
Query: 173 TH 174
H
Sbjct: 444 VH 445
Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 60/186 (32%), Positives = 87/186 (46%), Gaps = 25/186 (13%)
Query: 10 NMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 69
N + V S TI S + G AR+ F +P RD V W AM+ Y RV E +
Sbjct: 160 NSHDHTVHSLITIYSYLDDPGA---ARKVFNGIPSRDVVSWNAMMKAYGRVGMNGEVGRM 216
Query: 70 FREM-QTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYC 107
R+M + + + T +L D VG AL+ MY
Sbjct: 217 LRDMVKDGAVVPNAVTLAVVLAACRDEGDLVLGRWVEEWSKSAGMETDSLVGSALVGMYE 276
Query: 108 KCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVG 167
KCG++ +A+RVF ++ KD W AMI G A +G + A+ +F M +A + D++T G
Sbjct: 277 KCGEIAEARRVFDSIIDKDVVAWNAMITGYAQNGMSNEAISLFHNMKKAGVCPDKITLAG 336
Query: 168 VLSACT 173
VLSAC+
Sbjct: 337 VLSACS 342
Score = 37.0 bits (84), Expect = 3.3, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERD 46
A+E+F M+ K+V SW ++ G GQ D A Q+F M D
Sbjct: 385 AIEVFRKMRCKNVASWNALICGLAFNGQGDEAIQHFELMRNED 427
>gi|125551786|gb|EAY97495.1| hypothetical protein OsI_19422 [Oryza sativa Indica Group]
Length = 620
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 63/182 (34%), Positives = 98/182 (53%), Gaps = 22/182 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D + + +V Y G++ AR+ F + ++D V W AMI GY + EA++LF M+
Sbjct: 264 DSLVGSALVGMYEKCGEIAEARRVFDSIIDKDVVAWNAMITGYAQNGMSNEAISLFHNMK 323
Query: 75 TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVE 113
+ + D+ T +L+ N+++VG AL+DMY KCGD++
Sbjct: 324 KAGVCPDKITLAGVLSACSAVGALELGSELDGYASCRGLYNNVYVGTALVDMYAKCGDLD 383
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS-IRLDEVTYVGVLSAC 172
KA VF KM K+ +W A+I GLA +G GD A+ F M ++ D++T++GVLSAC
Sbjct: 384 KAIEVFRKMRCKNVASWNALICGLAFNGQGDEAIQHFELMRNEDGLKPDDITFIGVLSAC 443
Query: 173 TH 174
H
Sbjct: 444 VH 445
Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 60/186 (32%), Positives = 87/186 (46%), Gaps = 25/186 (13%)
Query: 10 NMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 69
N + V S TI S + G AR+ F +P RD V W AM+ Y RV E +
Sbjct: 160 NSHDHTVHSLITIYSYLDDPGA---ARKVFNGIPSRDVVSWNAMMKAYGRVGMNGEVGRM 216
Query: 70 FREM-QTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYC 107
R+M + + + T +L D VG AL+ MY
Sbjct: 217 LRDMVKDGAVVPNAVTLAVVLAACRDEGDLVLGRWVEEWSKSAGMETDSLVGSALVGMYE 276
Query: 108 KCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVG 167
KCG++ +A+RVF ++ KD W AMI G A +G + A+ +F M +A + D++T G
Sbjct: 277 KCGEIAEARRVFDSIIDKDVVAWNAMITGYAQNGMSNEAISLFHNMKKAGVCPDKITLAG 336
Query: 168 VLSACT 173
VLSAC+
Sbjct: 337 VLSACS 342
Score = 37.0 bits (84), Expect = 3.3, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERD 46
A+E+F M+ K+V SW ++ G GQ D A Q+F M D
Sbjct: 385 AIEVFRKMRCKNVASWNALICGLAFNGQGDEAIQHFELMRNED 427
>gi|326527617|dbj|BAK08083.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 642
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 62/190 (32%), Positives = 106/190 (55%), Gaps = 21/190 (11%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE 65
++ G ++VI T ++ Y+ +D AR+ F +M +RD V W+ MI GY + R E
Sbjct: 275 DLIGEDDLQNVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLE 334
Query: 66 ALTLFREMQTSNIRRDEFTTVRILTT---FNND------------------IFVGIALID 104
+L LF M+ ++ R +E T V +++ +D ++G ALID
Sbjct: 335 SLELFERMKATDCRPNEVTLVGVISACAQLGSDELVEQIGNYAENQRLPLTSYLGSALID 394
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVT 164
MY +CG V +A+ VF +M +K TW +MI GLA++G + A+ ++ +M ++ +E+T
Sbjct: 395 MYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNEIT 454
Query: 165 YVGVLSACTH 174
+V +L+ACTH
Sbjct: 455 FVALLAACTH 464
Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats.
Identities = 63/194 (32%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A+ +F M KD I +++GY G VD AR+ F M R W +MI Y
Sbjct: 170 MESAVSVFDEMPVKDPIPINCLITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHG 229
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFN--------------------NDIFVGI 100
FREALTLF M + R + T + + ++ V
Sbjct: 230 GEFREALTLFDRMLSEGARPNAITITSVFSICAKSGDLDTGKRVRDLIGEDDLQNVIVHT 289
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
AL++MY KC ++ A+R F +M ++D W+ MI G A +G +L++F +M R
Sbjct: 290 ALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRP 349
Query: 161 DEVTYVGVLSACTH 174
+EVT VGV+SAC
Sbjct: 350 NEVTLVGVISACAQ 363
Score = 48.9 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 31/109 (28%)
Query: 95 DIFVGIALIDMYC-------------------------------KCGDVEKAQRVFWKML 123
D+FV AL+D Y K GDV+KA+R+F M
Sbjct: 153 DVFVLTALVDFYAKNGDMESAVSVFDEMPVKDPIPINCLITGYSKAGDVDKARRLFDGME 212
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
R+ +W +MI A G AL +F +ML R + +T V S C
Sbjct: 213 RRTSASWNSMIACYAHGGEFREALTLFDRMLSEGARPNAITITSVFSIC 261
>gi|297846320|ref|XP_002891041.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336883|gb|EFH67300.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 586
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 64/197 (32%), Positives = 105/197 (53%), Gaps = 25/197 (12%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A ++F M ++V+SWT ++SGY G + A F +MPERD W A++ +
Sbjct: 180 LARQLFDEMSERNVVSWTAMLSGYARSGDIFNAVALFEEMPERDVPSWNAILAACTQNGL 239
Query: 63 FREALTLFREM-QTSNIRRDEFTTVRILT---------------------TFNNDIFVGI 100
F EA++LFR M IR +E T V +L+ ++D+FV
Sbjct: 240 FVEAVSLFRRMINDPCIRPNEVTLVCVLSACAQTGTLQLAKGIHAFAYRRNLSSDVFVSN 299
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS--- 157
+L+D+Y KCG++E+A VF +K W +MI A+ G + A+ +F M++ +
Sbjct: 300 SLVDLYGKCGNLEEASSVFKMSSKKSLTAWNSMINCFALHGRSEEAIAVFEDMMKLNSHD 359
Query: 158 IRLDEVTYVGVLSACTH 174
I+ D +T++G+L+ACTH
Sbjct: 360 IKPDHITFIGLLNACTH 376
>gi|255542098|ref|XP_002512113.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549293|gb|EEF50782.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 336
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 102/190 (53%), Gaps = 21/190 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F + V+SWT ++SG+ G ++ AR +F P +D + AMI GY++ N F+E
Sbjct: 114 VFDEIPGPCVVSWTLMISGFAKVGDIESARLFFDGAPRKDRGICGAMISGYVQNNCFKEC 173
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDM 105
L +F +Q ++ DE + IL I + LIDM
Sbjct: 174 LYMFSMIQLTDNVPDEGIFLSILCACAQLGALDTGIWIHRYMDRLGLPLTIRLSTGLIDM 233
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y KCG+V+ A+ +F +M ++D W MI GLA+ G G+ A+++F +M A + D+VT+
Sbjct: 234 YAKCGNVDLAKSLFDEMPQRDTVCWNVMISGLAMHGDGEGAINLFLKMEEAGFKPDDVTF 293
Query: 166 VGVLSACTHN 175
+ +LSAC+++
Sbjct: 294 IAILSACSYS 303
>gi|242035545|ref|XP_002465167.1| hypothetical protein SORBIDRAFT_01g033280 [Sorghum bicolor]
gi|241919021|gb|EER92165.1| hypothetical protein SORBIDRAFT_01g033280 [Sorghum bicolor]
Length = 564
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 60/182 (32%), Positives = 97/182 (53%), Gaps = 22/182 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+I+ +V Y ++D A+ F +P+RD V W +I GY++ EA+ ++ +MQ
Sbjct: 304 DIIAGNAVVDMYAKLSKIDAAQMVFDNLPDRDVVSWNTLITGYMQNGLSNEAVRIYNDMQ 363
Query: 75 T-SNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDV 112
++ + T V IL ++N D++V LID+Y KCG +
Sbjct: 364 NHEGLKPIQGTFVSILPAYSNLGALQQGMRMHALSIKTGLNLDVYVSTCLIDLYAKCGKL 423
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+A +F M R+ W A+I GL + GHG AL++FSQM + I+ D VT+V +L+AC
Sbjct: 424 VEAMLLFEHMPRRSTGPWNAIIAGLGVHGHGAKALNLFSQMQQEGIKPDNVTFVSLLAAC 483
Query: 173 TH 174
+H
Sbjct: 484 SH 485
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 51/178 (28%), Positives = 83/178 (46%), Gaps = 21/178 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
+V + ++V Y+ G+V A + F +MPERD W AM+ G R R +A+ LF M
Sbjct: 101 NVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNARAVDAVALFGRMV 160
Query: 75 TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVE 113
+ D T +L + ++FV ALID+Y K G +
Sbjct: 161 GEGVAGDAVTLSSVLPMCVLLGDRALALVMHVYAVKRGLSGELFVCNALIDVYGKLGMLV 220
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+A+ VF M +D TW ++I G A+++F M+++ + D +T V + SA
Sbjct: 221 EARWVFGGMALRDLVTWNSIISAYEQGGKVAAAVELFHGMMKSGVSPDVLTLVSLASA 278
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 42/84 (50%)
Query: 89 LTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALD 148
L + ++F +L+ Y + G V +A RVF +M +D W AM+ GL + A+
Sbjct: 95 LGLLHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNARAVDAVA 154
Query: 149 MFSQMLRASIRLDEVTYVGVLSAC 172
+F +M+ + D VT VL C
Sbjct: 155 LFGRMVGEGVAGDAVTLSSVLPMC 178
>gi|302142959|emb|CBI20254.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 92/171 (53%), Gaps = 18/171 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M +DV +WTT++S + G + ARQ F +MP R+ W AMIDGY R+
Sbjct: 164 ARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMIDGYSRLRNV 223
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
A LF +M N DI +I Y + ++K+ VF+K+
Sbjct: 224 ESAELLFSQMP------------------NRDIISWTTMIACYSQNKHLDKSLVVFFKLR 265
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+K+ F W ++I GLA+ G+ + AL MFS+M R I+ + VT++ VL ACTH
Sbjct: 266 KKNLFCWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTH 316
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 21/144 (14%)
Query: 31 QVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT 90
++D A F M E + ++ AMI ++ +AL + +M + + FT ++
Sbjct: 59 RIDYAILAFTHMQEPNVFVYNAMIRALVQCYHPVQALDCYLDMVQAQVSPTSFTFSSLVK 118
Query: 91 T---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT 129
F++ +FV AL+D Y G + +A+RVF +M +D F
Sbjct: 119 ACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGKIVEARRVFDEMSERDVFA 178
Query: 130 WTAMIVGLAISGHGDTALDMFSQM 153
WT MI A +G +A +F +M
Sbjct: 179 WTTMISVHARTGDMSSARQLFDEM 202
>gi|18398422|ref|NP_564401.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806407|sp|P0C7R0.1|PPR69_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g32415, mitochondrial; Flags: Precursor
gi|332193363|gb|AEE31484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 761
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 62/184 (33%), Positives = 102/184 (55%), Gaps = 23/184 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM- 73
D +SWT+++ GY+ G V A F ++ ++D V WT MI G ++ F EA +L +M
Sbjct: 399 DKVSWTSMIDGYLEAGDVSRAFGLFQKLHDKDGVTWTVMISGLVQNELFAEAASLLSDMV 458
Query: 74 -------------------QTSNIRRDEFTTVRILTT---FNNDIFVGIALIDMYCKCGD 111
TSN+ + + I T ++ D+ + +L+ MY KCG
Sbjct: 459 RCGLKPLNSTYSVLLSSAGATSNLDQGKHIHCVIAKTTACYDPDLILQNSLVSMYAKCGA 518
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+E A +F KM++KD +W +MI+GL+ G D AL++F +ML + + + VT++GVLSA
Sbjct: 519 IEDAYEIFAKMVQKDTVSWNSMIMGLSHHGLADKALNLFKEMLDSGKKPNSVTFLGVLSA 578
Query: 172 CTHN 175
C+H+
Sbjct: 579 CSHS 582
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 79/150 (52%), Gaps = 18/150 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+E+F M ++V+SW T+V+G I G ++ A+Q F MP RD V W AMI GY+ +
Sbjct: 157 AVELFDEMPERNVVSWNTLVTGLIRNGDMEKAKQVFDAMPSRDVVSWNAMIKGYIENDGM 216
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
EA LF +M N + +++ YC+ GDV +A R+F +M
Sbjct: 217 EEAKLLFGDMSEKN------------------VVTWTSMVYGYCRYGDVREAYRLFCEMP 258
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
++ +WTAMI G A + AL +F +M
Sbjct: 259 ERNIVSWTAMISGFAWNELYREALMLFLEM 288
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 62/227 (27%), Positives = 99/227 (43%), Gaps = 62/227 (27%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+FG+M K+V++WT++V GY G V A + F +MPER+ V WTAMI G+ +REA
Sbjct: 222 LFGDMSEKNVVTWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTAMISGFAWNELYREA 281
Query: 67 LTLFREMQTS-----------------------NIRR-DEFTTVRILT----TFNNDIFV 98
L LF EM+ RR E ++++ T ++D +
Sbjct: 282 LMLFLEMKKDVDAVSPNGETLISLAYACGGLGVEFRRLGEQLHAQVISNGWETVDHDGRL 341
Query: 99 GIALIDMYC-----------------------------KCGDVEKAQRVFWKMLR-KDKF 128
+L+ MY K GD+E+A+ +F ++ DK
Sbjct: 342 AKSLVHMYASSGLIASAQSLLNESFDLQSCNIIINRYLKNGDLERAETLFERVKSLHDKV 401
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
+WT+MI G +G A +F ++ D VT+ ++S N
Sbjct: 402 SWTSMIDGYLEAGDVSRAFGLFQKLHDK----DGVTWTVMISGLVQN 444
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 48/150 (32%), Positives = 71/150 (47%), Gaps = 12/150 (8%)
Query: 16 VISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 75
V+ WT+++S Y G +D AR F MPER+ V AM+ GY++ R EA TLFREM
Sbjct: 77 VVYWTSLLSKYAKTGYLDEARVLFEVMPERNIVTCNAMLTGYVKCRRMNEAWTLFREMPK 136
Query: 76 SNIR------------RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+ + R E ++ L+ + GD+EKA++VF M
Sbjct: 137 NVVSWTVMLTALCDDGRSEDAVELFDEMPERNVVSWNTLVTGLIRNGDMEKAKQVFDAMP 196
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+D +W AMI G + + A +F M
Sbjct: 197 SRDVVSWNAMIKGYIENDGMEEAKLLFGDM 226
>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
[Vitis vinifera]
Length = 788
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 101/195 (51%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M AL +F M KD++SW T+V+ Y GQ+D A + F +M E++ V W ++I G +
Sbjct: 373 MDEALHLFKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQN 432
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
+ +AL F M + D+ T L++ + D+FV
Sbjct: 433 GSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVS 492
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALI MY KCG + A+ +F + D +W ++I A++G+G AL +F +M +
Sbjct: 493 NALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVA 552
Query: 160 LDEVTYVGVLSACTH 174
DEVT+VG+LSAC+H
Sbjct: 553 PDEVTFVGILSACSH 567
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 92/172 (53%), Gaps = 22/172 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+ +F M K+ ISWTT+++GY+ G++D ARQ QMP R+ TAMI GY++ R
Sbjct: 283 AISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNVAAQTAMISGYVQNKRM 342
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+A +F ++ ++R + +N +I Y +CG +++A +F +M+
Sbjct: 343 DDARQIFNQI-----------SIRDVVCWN-------TMIAGYSQCGRMDEALHLFKQMV 384
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
+KD +W M+ A G D A+ +F +M +I V++ ++S T N
Sbjct: 385 KKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNI----VSWNSLISGLTQN 432
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE 65
E F + N + +SW T++ G+ G++ AR+ F QMP R+ V W AMI Y++ E
Sbjct: 223 EFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDE 282
Query: 66 ALTLFREMQTSN-----------IRRDEFTTVRILTT--FNNDIFVGIALIDMYCKCGDV 112
A++LF EM N +R + R L ++ A+I Y + +
Sbjct: 283 AISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNVAAQTAMISGYVQNKRM 342
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
+ A+++F ++ +D W MI G + G D AL +F QM++ I
Sbjct: 343 DDARQIFNQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQMVKKDI 388
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 14/164 (8%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+++F +M +K+ ++ +++S + G++ ARQ F MP+R+ V W +MI YL +R
Sbjct: 34 AIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRV 93
Query: 64 REALTLFREMQTSNI-----------RRDEFTTVR---ILTTFNNDIFVGIALIDMYCKC 109
EA LF +M T ++ R E R L + + A++ Y K
Sbjct: 94 EEARQLFDKMPTRDLYSWTLMITCYTRNGELAKARNLFNLLPYKWNPVCCNAMVAGYAKN 153
Query: 110 GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
++A+R+F M KD +W +M+ G +G L F +M
Sbjct: 154 RQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEM 197
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 18/150 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M KD++SW ++++GY G++ + Q+F +M ERD V W M+DG++ V
Sbjct: 159 ARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDL 218
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+ F ++ N TV +T + G A + G + +A+R+F +M
Sbjct: 219 NSSWEFFEKIPNPN-------TVSWVT-----MLCGFA------RFGKIAEARRLFDQMP 260
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
++ W AMI + H D A+ +F +M
Sbjct: 261 IRNVVAWNAMIAAYVQNCHVDEAISLFMEM 290
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 18/153 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M L+ F M +DV+SW +V G++ G ++ + ++F ++P + V W M+ G+ R
Sbjct: 187 MRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARF 246
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
+ EA LF +M +R + +N A+I Y + V++A +F
Sbjct: 247 GKIAEARRLFDQM-----------PIRNVVAWN-------AMIAAYVQNCHVDEAISLFM 288
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+M K+ +WT +I G G D A + +QM
Sbjct: 289 EMPEKNSISWTTVINGYVRMGKLDEARQLLNQM 321
>gi|413939497|gb|AFW74048.1| hypothetical protein ZEAMMB73_972326 [Zea mays]
Length = 576
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 65/197 (32%), Positives = 107/197 (54%), Gaps = 29/197 (14%)
Query: 5 LEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFR 64
++FG K KDV W+ +VSGY G++ +AR+ F +MP +D V WT ++ GY++ R++
Sbjct: 259 FDLFGE-KVKDVRVWSVMVSGYARVGEIGMARKLFDEMPNKDLVAWTVLVGGYVQAGRYK 317
Query: 65 EALTLFREMQTSNIRRDEFTTVRILTT-FNNDIF---------------------VGIAL 102
EAL LF EM+ + + DE T V +L+ ND V +
Sbjct: 318 EALGLFEEMEAAGLEADEMTVVTVLSACAQNDAISLVKRLHYRMNQNGLVSRNARVATSF 377
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFT----WTAMIVGLAISGHGDTALDMFSQMLRASI 158
+ +Y K G ++ A VF + D+F + AMI GLA G+G+ A+ +F +M +
Sbjct: 378 VHIYAKHGCIQTAMDVFRGI--TDEFKTVELFNAMIHGLAHHGYGEKAISLFDKMESLGL 435
Query: 159 RLDEVTYVGVLSACTHN 175
+ D++T+VG+L AC+ +
Sbjct: 436 QPDDITFVGILCACSRS 452
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 60/218 (27%), Positives = 87/218 (39%), Gaps = 57/218 (26%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV + +++ Y G +A + F +MP RD V + +I Y++ R AL +FR M
Sbjct: 131 DVFAANSLLHFYAAFGLHALACKLFDEMPTRDTVSFNTLIGSYVQSGRVERALVVFRNMV 190
Query: 75 TSNIRRDEFTTVRIL--------------------TTFNNDIF----VGIALIDMYCKCG 110
R DE+T +L T + + V I L+DMY KCG
Sbjct: 191 EGGFRLDEWTIRALLGACAGLGDFMVAKAAHGFASRTLRHRLLDSGEVVIGLVDMYVKCG 250
Query: 111 DVEKAQRVF------------W---------------------KMLRKDKFTWTAMIVGL 137
V A++ F W +M KD WT ++ G
Sbjct: 251 AVHLARKTFDLFGEKVKDVRVWSVMVSGYARVGEIGMARKLFDEMPNKDLVAWTVLVGGY 310
Query: 138 AISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
+G AL +F +M A + DE+T V VLSAC N
Sbjct: 311 VQAGRYKEALGLFEEMEAAGLEADEMTVVTVLSACAQN 348
Score = 43.9 bits (102), Expect = 0.028, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 40/81 (49%)
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
F +D+F +L+ Y G A ++F +M +D ++ +I SG + AL +F
Sbjct: 128 FASDVFAANSLLHFYAAFGLHALACKLFDEMPTRDTVSFNTLIGSYVQSGRVERALVVFR 187
Query: 152 QMLRASIRLDEVTYVGVLSAC 172
M+ RLDE T +L AC
Sbjct: 188 NMVEGGFRLDEWTIRALLGAC 208
>gi|242063508|ref|XP_002453043.1| hypothetical protein SORBIDRAFT_04g037320 [Sorghum bicolor]
gi|241932874|gb|EES06019.1| hypothetical protein SORBIDRAFT_04g037320 [Sorghum bicolor]
Length = 578
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 65/198 (32%), Positives = 106/198 (53%), Gaps = 29/198 (14%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +FG+ K KD W+ ++SGY G++ +AR F +MP +D V WT ++ GY++ R
Sbjct: 259 AFNLFGD-KTKDARIWSVMMSGYARAGEIYMARNLFDEMPNKDLVAWTVLVGGYVQAGRC 317
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIA---------------------- 101
+EAL LF EM+ + + DE T V +L+ +G+A
Sbjct: 318 KEALQLFEEMEATGLEADEVTVVTVLSACVQHGAIGLAKRLHRRVNQNGLVSRNARVATS 377
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFT----WTAMIVGLAISGHGDTALDMFSQMLRAS 157
+ +Y K G ++ A VF + D+F + AMI GLA G+G+ A+ +F +M
Sbjct: 378 FVHIYAKHGCIQTAMDVFRGV--TDEFKTVELFNAMIHGLAHHGYGEKAISLFDEMETLE 435
Query: 158 IRLDEVTYVGVLSACTHN 175
++ D++T+VGVL AC+H+
Sbjct: 436 LQPDDITFVGVLCACSHS 453
Score = 72.0 bits (175), Expect = 9e-11, Method: Composition-based stats.
Identities = 56/218 (25%), Positives = 85/218 (38%), Gaps = 57/218 (26%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ +++ Y + G +A + F +MP D V + +I Y++ AL +FR+M
Sbjct: 132 DLFVANSLLHFYASFGLHALACKLFDEMPASDTVSFNTLISSYVQSGCVERALGVFRDMV 191
Query: 75 TSNIRRDEFTTVRILT------------------------TFNNDIFVGIALIDMYCKCG 110
R DE+T +L T + V I L+DMY KCG
Sbjct: 192 EGGFRLDEWTITALLGACAGLGDLMVAKAAHGFASRALRHTLFDSAEVVIGLVDMYVKCG 251
Query: 111 DVEKAQRVF------------W---------------------KMLRKDKFTWTAMIVGL 137
V+ ++R F W +M KD WT ++ G
Sbjct: 252 AVQLSRRAFNLFGDKTKDARIWSVMMSGYARAGEIYMARNLFDEMPNKDLVAWTVLVGGY 311
Query: 138 AISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
+G AL +F +M + DEVT V VLSAC +
Sbjct: 312 VQAGRCKEALQLFEEMEATGLEADEVTVVTVLSACVQH 349
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 40/81 (49%)
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
F +D+FV +L+ Y G A ++F +M D ++ +I SG + AL +F
Sbjct: 129 FASDLFVANSLLHFYASFGLHALACKLFDEMPASDTVSFNTLISSYVQSGCVERALGVFR 188
Query: 152 QMLRASIRLDEVTYVGVLSAC 172
M+ RLDE T +L AC
Sbjct: 189 DMVEGGFRLDEWTITALLGAC 209
>gi|356532311|ref|XP_003534717.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Glycine max]
Length = 755
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 93/182 (51%), Gaps = 21/182 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV + ++V+ Y G +D + F M RD V W AM+ GY + EAL LF EM+
Sbjct: 395 DVATQNSLVTMYAKCGHLDQSSIVFDMMNRRDLVSWNAMVTGYAQNGYVCEALFLFNEMR 454
Query: 75 TSNIRRDEFTTVRIL---------------------TTFNNDIFVGIALIDMYCKCGDVE 113
+ N D T V +L I V +L+DMYCKCGD++
Sbjct: 455 SDNQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCKCGDLD 514
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
AQR F +M D +W+A+IVG G G+ AL +S+ L + ++ + V ++ VLS+C+
Sbjct: 515 TAQRCFNQMPSHDLVSWSAIIVGYGYHGKGEAALRFYSKFLESGMKPNHVIFLSVLSSCS 574
Query: 174 HN 175
HN
Sbjct: 575 HN 576
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 18/169 (10%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+++++ Y G D+AR+ F MPER+ V WT +I Y R R EA +LF EM+ I+
Sbjct: 100 SSLINFYAKFGFADVARKVFDYMPERNVVPWTTIIGCYSRTGRVPEAFSLFDEMRRQGIQ 159
Query: 80 RDEFTTVR------------------ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWK 121
T + IL F +DI + +++++Y KCG++E ++++F
Sbjct: 160 PSSVTVLSLLFGVSELAHVQCLHGCAILYGFMSDINLSNSMLNVYGKCGNIEYSRKLFDY 219
Query: 122 MLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLS 170
M +D +W ++I A G+ L + M T+ VLS
Sbjct: 220 MDHRDLVSWNSLISAYAQIGNICEVLLLLKTMRLQGFEAGPQTFGSVLS 268
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 80/181 (44%), Gaps = 21/181 (11%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
D+ ++++ Y G ++ +R+ F M RD V W ++I Y ++ E L L + M
Sbjct: 192 SDINLSNSMLNVYGKCGNIEYSRKLFDYMDHRDLVSWNSLISAYAQIGNICEVLLLLKTM 251
Query: 74 QTSNIR---------------RDEFTTVRIL------TTFNNDIFVGIALIDMYCKCGDV 112
+ R E R L F D V +LI +Y K G +
Sbjct: 252 RLQGFEAGPQTFGSVLSVAASRGELKLGRCLHGQILRAGFYLDAHVETSLIVVYLKGGKI 311
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+ A R+F + KD WTAMI GL +G D AL +F QML+ ++ T V++AC
Sbjct: 312 DIAFRMFERSSDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKPSTATMASVITAC 371
Query: 173 T 173
Sbjct: 372 A 372
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 10/170 (5%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F +KDV+ WT ++SG + G D A F QM + TA +
Sbjct: 314 AFRMFERSSDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKPSTATM--------- 364
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+T ++ + N+ + + D+ +L+ MY KCG ++++ VF M
Sbjct: 365 ASVITACAQLGSYNLGTSILGYI-LRQELPLDVATQNSLVTMYAKCGHLDQSSIVFDMMN 423
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
R+D +W AM+ G A +G+ AL +F++M + D +T V +L C
Sbjct: 424 RRDLVSWNAMVTGYAQNGYVCEALFLFNEMRSDNQTPDSITIVSLLQGCA 473
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 87 RILTT-FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDT 145
RIL + + D ++ +LI+ Y K G + A++VF M ++ WT +I + +G
Sbjct: 86 RILVSGLSLDAYIASSLINFYAKFGFADVARKVFDYMPERNVVPWTTIIGCYSRTGRVPE 145
Query: 146 ALDMFSQMLRASIRLDEVTYVGVL 169
A +F +M R I+ VT + +L
Sbjct: 146 AFSLFDEMRRQGIQPSSVTVLSLL 169
>gi|297837203|ref|XP_002886483.1| hypothetical protein ARALYDRAFT_338156 [Arabidopsis lyrata subsp.
lyrata]
gi|297332324|gb|EFH62742.1| hypothetical protein ARALYDRAFT_338156 [Arabidopsis lyrata subsp.
lyrata]
Length = 1243
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 101/192 (52%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M N+D SW +VSGY + G +++AR YF + PE++ V W ++I Y + +
Sbjct: 676 AFALFSEMPNRDAHSWNMMVSGYASVGNLELARHYFEKTPEKNIVSWNSIIAAYDKNKDY 735
Query: 64 REALTLFREMQTSNIRRDEFTTVRILT--------------------TFNNDIFVGIALI 103
+EA+ +F M + D T +L+ T D+ V ALI
Sbjct: 736 KEAVDVFIRMNIDGEKPDPHTLTSLLSVSTGLVNLRLGMQMHQIVVKTVIPDVPVHNALI 795
Query: 104 DMYCKCGDVEKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
MY +CG++ +++R+F +M L+++ TW A+I G A G+ AL++F M I
Sbjct: 796 TMYSRCGEIMESRRIFDEMKLKREVITWNAIIGGYAFHGNASEALNLFWSMKCYGIHPSH 855
Query: 163 VTYVGVLSACTH 174
+T+V VL+AC H
Sbjct: 856 ITFVSVLNACAH 867
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 83/153 (54%), Gaps = 21/153 (13%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A EIF ++ +++++W T++SGY+ R ++ AR+ F +MPERD V W AMI GY+
Sbjct: 403 AREIFEKLEARNIVTWNTMISGYVKRREMTQARKLFDEMPERDVVTWNAMISGYVSCGGI 462
Query: 64 R---EALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
R EA LF EM + RD F ++N +I Y K + +A +F
Sbjct: 463 RFLEEARKLFDEMPS----RDSF-------SWNT-------MISGYAKNRRISEALLLFE 504
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
KM ++ +W+AMI G +G + A D+F +M
Sbjct: 505 KMPERNAVSWSAMITGFCHNGEVNRAFDLFRRM 537
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 18/160 (11%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
++V+SW +++ Y+ G V AR F QM +RD + W MIDGY+ V+R +A LF EM
Sbjct: 624 RNVVSWNSMIKAYLKVGDVVSARLLFDQMKDRDTISWNTMIDGYVHVSRMDDAFALFSEM 683
Query: 74 QTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
N D ++ Y G++E A+ F K K+ +W ++
Sbjct: 684 P------------------NRDAHSWNMMVSGYASVGNLELARHYFEKTPEKNIVSWNSI 725
Query: 134 IVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
I + A+D+F +M + D T +LS T
Sbjct: 726 IAAYDKNKDYKEAVDVFIRMNIDGEKPDPHTLTSLLSVST 765
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 25/152 (16%)
Query: 27 INRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTV 86
I G + AR+ F ++ R+ V W MI GY++ +A LF EM
Sbjct: 395 IRSGYIAEAREIFEKLEARNIVTWNTMISGYVKRREMTQARKLFDEMPE----------- 443
Query: 87 RILTTFNNDIFVGIALIDMYCKCGDV---EKAQRVFWKMLRKDKFTWTAMIVGLAISGHG 143
R + T+N A+I Y CG + E+A+++F +M +D F+W MI G A +
Sbjct: 444 RDVVTWN-------AMISGYVSCGGIRFLEEARKLFDEMPSRDSFSWNTMISGYAKNRRI 496
Query: 144 DTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
AL +F +M + V++ +++ HN
Sbjct: 497 SEALLLFEKMPER----NAVSWSAMITGFCHN 524
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 77/185 (41%), Gaps = 35/185 (18%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
AL +F M ++ +SW+ +++G+ + G+V+ A F +MP +D A++ G ++ R
Sbjct: 499 ALLLFEKMPERNAVSWSAMITGFCHNGEVNRAFDLFRRMPVKDSSSLCALVAGLIKNERL 558
Query: 64 REALTLFREMQTSNIRRDEFT-----------------TVRIL----------------- 89
EA + + + + R++ R L
Sbjct: 559 EEAAWVLGQYGSLDSGREDLVYAYNTLIVGYGQRGQVEAARCLFDQIPDLCDDDDHGGAF 618
Query: 90 -TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALD 148
F ++ ++I Y K GDV A+ +F +M +D +W MI G D A
Sbjct: 619 RERFRRNVVSWNSMIKAYLKVGDVVSARLLFDQMKDRDTISWNTMIDGYVHVSRMDDAFA 678
Query: 149 MFSQM 153
+FS+M
Sbjct: 679 LFSEM 683
>gi|218189919|gb|EEC72346.1| hypothetical protein OsI_05579 [Oryza sativa Indica Group]
Length = 545
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 67/192 (34%), Positives = 100/192 (52%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M KD ++W +++ GY+ VD A +F QMP + V WTA+I G+++ +
Sbjct: 173 ARTVFDRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQP 232
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
+AL LF +M R + T V +L+ +I V AL
Sbjct: 233 IQALELFGKMLLEGHRPNHITIVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNAL 292
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY K G + A VF ++ KD FTWT MI + G+G A+++F MLR+ I +
Sbjct: 293 MDMYAKSGSIASAFSVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNS 352
Query: 163 VTYVGVLSACTH 174
VT+V VLSAC+H
Sbjct: 353 VTFVSVLSACSH 364
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 58/212 (27%), Positives = 94/212 (44%), Gaps = 53/212 (25%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
N+ IS I Y G+ A + F ++P D + +T+++ +L+++ +A+++F
Sbjct: 51 NQQSIS-CKIFRSYAEFGRPADAGRLFDEIPHPDIISFTSLMSLHLKLDHHWKAISVFSH 109
Query: 73 MQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGD 111
S R D F V L+ ++++ V AL+DMYC+CG
Sbjct: 110 AIASGHRPDGFAAVGALSASGGLGDQRIGSVVHGLIFRCGLDSELVVCNALVDMYCRCGK 169
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLA--------------------------ISGHGD- 144
E A+ VF +ML KD+ TW +M+ G I+GH
Sbjct: 170 FEPARTVFDRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQD 229
Query: 145 ----TALDMFSQMLRASIRLDEVTYVGVLSAC 172
AL++F +ML R + +T VGVLSAC
Sbjct: 230 KQPIQALELFGKMLLEGHRPNHITIVGVLSAC 261
>gi|242047514|ref|XP_002461503.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
gi|241924880|gb|EER98024.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
Length = 786
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 59/181 (32%), Positives = 95/181 (52%), Gaps = 21/181 (11%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
+DV++W +++GY+ G V +AR+ F MP RD V W+ ++ GY++ AL +F+ M
Sbjct: 195 RDVVTWNAVLAGYVRAGMVGVAREVFDGMPMRDEVSWSTVVGGYVKEGELEVALGVFKNM 254
Query: 74 QTSNIRRDEFTTVRILTT-----------FNNDIF----------VGIALIDMYCKCGDV 112
++ +E V L+ F +++ +G AL+DMY KCG V
Sbjct: 255 VVQGVKANEAAIVTALSAAAQLGLLEQGKFVHEVIKRAGVAMSMNLGAALVDMYSKCGSV 314
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
A+ VF M +D F W +MI GLA G G A+ +F + + +T+VGVL+AC
Sbjct: 315 AAAKEVFDAMPWRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTNITFVGVLNAC 374
Query: 173 T 173
+
Sbjct: 375 S 375
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
D++V ALI Y CGDV ++VF ++ L +D TW A++ G +G A ++F M
Sbjct: 164 DLYVRNALIHFYGVCGDVAAMRKVFDELPLVRDVVTWNAVLAGYVRAGMVGVAREVFDGM 223
Query: 154 LRASIRLDEVTYVGVL 169
+R DEV++ V+
Sbjct: 224 ---PMR-DEVSWSTVV 235
>gi|224080790|ref|XP_002306231.1| predicted protein [Populus trichocarpa]
gi|222849195|gb|EEE86742.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 97/177 (54%), Gaps = 22/177 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T ++ Y+ RG VD A + F ++ E+D V W+AMI GY ++ A+ +F +M I+
Sbjct: 45 TALLDAYVKRGNVDEASKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIK 104
Query: 80 RDEFTTVRIL----------------------TTFNNDIFVGIALIDMYCKCGDVEKAQR 117
+E+T I+ + FNN + V AL+ MY K GD+E A
Sbjct: 105 PNEYTFSGIINACAAPTAGVEQGKQLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFE 164
Query: 118 VFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
VF + +D +W ++I G A G+G AL++F +M R ++ +D VT++GV+SACTH
Sbjct: 165 VFKRQRERDLVSWNSIISGYAQHGYGRKALEVFEEMQRQNLEMDGVTFIGVISACTH 221
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 17/118 (14%)
Query: 73 MQTSNIRRDEFTTVRILTT-----------------FNNDIFVGIALIDMYCKCGDVEKA 115
M I+ ++FT ILT + VG AL+D Y K G+V++A
Sbjct: 1 MSREGIKPNDFTYSTILTAQPGVSPFEMHAQAIKRNYVKSPSVGTALLDAYVKRGNVDEA 60
Query: 116 QRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+VF ++ KD W+AMI G A G + A+ +F QM + I+ +E T+ G+++AC
Sbjct: 61 SKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIKPNEYTFSGIINACA 118
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 31/88 (35%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F + +D++SW +I+SGY G
Sbjct: 162 AFEVFKRQRERDLVSWNSIISGYAQHG-------------------------------YG 190
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT 91
R+AL +F EMQ N+ D T + +++
Sbjct: 191 RKALEVFEEMQRQNLEMDGVTFIGVISA 218
>gi|326507322|dbj|BAJ95738.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 593
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 62/190 (32%), Positives = 106/190 (55%), Gaps = 21/190 (11%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE 65
++ G ++VI T ++ Y+ +D AR+ F +M +RD V W+ MI GY + R E
Sbjct: 226 DLIGEDDLQNVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLE 285
Query: 66 ALTLFREMQTSNIRRDEFTTVRILTT---FNND------------------IFVGIALID 104
+L LF M+ ++ R +E T V +++ +D ++G ALID
Sbjct: 286 SLELFERMKATDCRPNEVTLVGVISACAQLGSDELVEQIGNYAENQRLPLTSYLGSALID 345
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVT 164
MY +CG V +A+ VF +M +K TW +MI GLA++G + A+ ++ +M ++ +E+T
Sbjct: 346 MYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNEIT 405
Query: 165 YVGVLSACTH 174
+V +L+ACTH
Sbjct: 406 FVALLAACTH 415
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 62/194 (31%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A+ F M KD I +++GY G VD AR+ F M R W +MI Y
Sbjct: 121 MESAVSAFDEMPVKDPIPINCLITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHG 180
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFN--------------------NDIFVGI 100
FREAL LF M + R + T + + ++ V
Sbjct: 181 GEFREALALFDRMLSEGARPNAITITSVFSICAKSGDLDTGKRVRDLIGEDDLQNVIVHT 240
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
AL++MY KC ++ A+R F +M ++D W+ MI G A +G +L++F +M R
Sbjct: 241 ALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRP 300
Query: 161 DEVTYVGVLSACTH 174
+EVT VGV+SAC
Sbjct: 301 NEVTLVGVISACAQ 314
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 31/109 (28%)
Query: 95 DIFVGIALIDMYC-------------------------------KCGDVEKAQRVFWKML 123
D+FV AL+D Y K GDV+KA+R+F M
Sbjct: 104 DVFVLTALVDFYAKNGDMESAVSAFDEMPVKDPIPINCLITGYSKAGDVDKARRLFDGME 163
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
R+ +W +MI A G AL +F +ML R + +T V S C
Sbjct: 164 RRTSASWNSMIACYAHGGEFREALALFDRMLSEGARPNAITITSVFSIC 212
>gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group]
Length = 706
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 66/180 (36%), Positives = 90/180 (50%), Gaps = 21/180 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV+ T +V G+ D AR+ F MP+RD+V W AMI GY+ R REAL LF EM+
Sbjct: 267 DVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMR 326
Query: 75 TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVE 113
+ E T V LT + +G ALIDMY KCG V
Sbjct: 327 HAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVA 386
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
A VF M ++ +TWT+ + GLA++G G L +F +M + + VT+V VL C+
Sbjct: 387 AAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCS 446
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 40/111 (36%), Gaps = 31/111 (27%)
Query: 95 DIFVGIALIDMYCKCGDV-------------------------------EKAQRVFWKML 123
D V + MY GDV + A+ +F M
Sbjct: 236 DPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGGEADAARELFDGMP 295
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
++D W AMI G +G AL +F +M A + EVT V L+AC
Sbjct: 296 QRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQ 346
>gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group]
Length = 706
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 66/180 (36%), Positives = 90/180 (50%), Gaps = 21/180 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV+ T +V G+ D AR+ F MP+RD+V W AMI GY+ R REAL LF EM+
Sbjct: 267 DVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMR 326
Query: 75 TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVE 113
+ E T V LT + +G ALIDMY KCG V
Sbjct: 327 HAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVA 386
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
A VF M ++ +TWT+ + GLA++G G L +F +M + + VT+V VL C+
Sbjct: 387 AAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCS 446
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 40/111 (36%), Gaps = 31/111 (27%)
Query: 95 DIFVGIALIDMYCKCGDV-------------------------------EKAQRVFWKML 123
D V + MY GDV + A+ +F M
Sbjct: 236 DPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGGEADAARELFDGMP 295
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
++D W AMI G +G AL +F +M A + EVT V L+AC
Sbjct: 296 QRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQ 346
>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
Length = 699
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 66/180 (36%), Positives = 90/180 (50%), Gaps = 21/180 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV+ T +V G+ D AR+ F MP+RD+V W AMI GY+ R REAL LF EM+
Sbjct: 260 DVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMR 319
Query: 75 TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVE 113
+ E T V LT + +G ALIDMY KCG V
Sbjct: 320 HAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVA 379
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
A VF M ++ +TWT+ + GLA++G G L +F +M + + VT+V VL C+
Sbjct: 380 AAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCS 439
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 40/111 (36%), Gaps = 31/111 (27%)
Query: 95 DIFVGIALIDMYCKCGDV-------------------------------EKAQRVFWKML 123
D V + MY GDV + A+ +F M
Sbjct: 229 DPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGGEADAARELFDGMP 288
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
++D W AMI G +G AL +F +M A + EVT V L+AC
Sbjct: 289 QRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQ 339
>gi|51535410|dbj|BAD37280.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125596587|gb|EAZ36367.1| hypothetical protein OsJ_20695 [Oryza sativa Japonica Group]
gi|218197849|gb|EEC80276.1| hypothetical protein OsI_22264 [Oryza sativa Indica Group]
Length = 517
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 97/196 (49%), Gaps = 22/196 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A ++F +KD++ W ++ Y G+++ AR+ F + PE+D V W +I GY
Sbjct: 182 MAAARKMFDECTHKDIVCWNVMLGAYAKHGEMENARELFDRAPEKDVVSWNTIITGYAAQ 241
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN----------------------DIFV 98
+ AL +F EM+ + DE T V +L+ N I V
Sbjct: 242 GMLKHALEVFDEMRAAGWTPDEATIVSLLSCCANTGLLDAGRMIHHQLHLERRPWISIVV 301
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
G AL+ MY KCGD+ A F M D +TW ++I GLA G + ++ F +ML I
Sbjct: 302 GNALVSMYAKCGDLHTAVEGFNTMKDTDVWTWNSVIGGLAFHGQAEQSVRFFKKMLEKRI 361
Query: 159 RLDEVTYVGVLSACTH 174
+E++++ VL AC+H
Sbjct: 362 HPNEISFLCVLGACSH 377
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 64/152 (42%), Gaps = 22/152 (14%)
Query: 29 RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-QTSNIRRDEFTTVR 87
RG++ AR+ F +P D + AM+ GY +A ++R M + S +R D FT
Sbjct: 46 RGRMGYARKVFDGIPRPDLFMHNAMVRGYAHAGAPGDAFAVYRRMTEASRLRPDAFTFCY 105
Query: 88 ILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKD 126
+L F D +V ALI+M+ KCGD+ A + + D
Sbjct: 106 LLRACAGLPGSRAGRQVHGAVVKLGFLKDAYVRNALINMFAKCGDLRVASVLLDEAGEGD 165
Query: 127 KFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
W+A+I G A G A MF + I
Sbjct: 166 VVAWSAVIAGHAARGDMAAARKMFDECTHKDI 197
>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Glycine max]
Length = 782
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 64/192 (33%), Positives = 97/192 (50%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M KD++SW I+SG +N +++ A F +MP R + WT MI G +
Sbjct: 332 ARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFG 391
Query: 64 REALTLFREMQTSNIRRDEFT------TVRILTTFNN---------------DIFVGIAL 102
E L LF +M+ + ++ + +L + +N + VG AL
Sbjct: 392 EEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNAL 451
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I MY +CG VE A VF M D +W AMI LA GHG A+ ++ +ML+ I D
Sbjct: 452 ITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDR 511
Query: 163 VTYVGVLSACTH 174
+T++ +LSAC+H
Sbjct: 512 ITFLTILSACSH 523
Score = 92.4 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 59/216 (27%), Positives = 91/216 (42%), Gaps = 56/216 (25%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
+D +WTTI++GY+ + AR+ M + V W AMI GY+ + EA L R M
Sbjct: 206 RDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRM 265
Query: 74 QTSNIRRDEFTTVRILTTFNNDIFVGI-------------------------ALIDMYCK 108
+ I+ DE+T +++ +N I ALI +Y +
Sbjct: 266 HSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTR 325
Query: 109 CGDVEKAQRVFWKMLRKD-------------------------------KFTWTAMIVGL 137
CG + +A+RVF KM KD TWT MI GL
Sbjct: 326 CGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGL 385
Query: 138 AISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
A +G G+ L +F+QM + + Y G +++C+
Sbjct: 386 AQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCS 421
Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 56/238 (23%), Positives = 90/238 (37%), Gaps = 66/238 (27%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRV 60
+A +F + D+++ TT++S Y G + +A Q F P RD V + AMI +
Sbjct: 49 YARYLFDKIPKPDIVAATTMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHS 108
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRIL-------------TTFNNDIF---------V 98
+ AL LF +M+ D FT +L + ++F V
Sbjct: 109 HDGHAALQLFVQMKRLGFVPDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSV 168
Query: 99 GIALIDMYCKCGD---------VEKAQRVFWKML--RKDKFTWT---------------- 131
AL+ Y C + A+++F + R+D+ WT
Sbjct: 169 LNALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAAR 228
Query: 132 ---------------AMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
AMI G G + A D+ +M I+LDE TY V+SA ++
Sbjct: 229 ELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASN 286
>gi|218196522|gb|EEC78949.1| hypothetical protein OsI_19398 [Oryza sativa Indica Group]
Length = 746
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 63/183 (34%), Positives = 102/183 (55%), Gaps = 24/183 (13%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D + + ++ Y G++ AR+ F + ++D V W AMI GY + EA++LF M+
Sbjct: 288 DSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMR 347
Query: 75 TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVE 113
+ +R D+ T +L+ ++++VG AL+DMY KCGD++
Sbjct: 348 IAGMRPDKITLAGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLD 407
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR--ASIRLDEVTYVGVLSA 171
KA VF KM K+ +W A+I GLA +G GD A+ F Q++R ++ D++T++GVLSA
Sbjct: 408 KAIEVFRKMPCKNVASWNALICGLAFNGRGDEAIQHF-QLMRNEEGLKPDDITFIGVLSA 466
Query: 172 CTH 174
C H
Sbjct: 467 CVH 469
Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 57/161 (35%), Positives = 81/161 (50%), Gaps = 22/161 (13%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR--------------R 80
AR+ F +P RD V W AM+ Y RV E +FR+M R
Sbjct: 206 ARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNAVTVAVVLAACR 265
Query: 81 DEFTTV--RILTTFN------NDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA 132
D+ V R + ++ D VG AL+ MY KCG++ +A+RVF ++ KD W A
Sbjct: 266 DQGDLVLGRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNA 325
Query: 133 MIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
MI G A +G + A+ +F M A +R D++T GVLSAC+
Sbjct: 326 MITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACS 366
>gi|222631052|gb|EEE63184.1| hypothetical protein OsJ_17993 [Oryza sativa Japonica Group]
Length = 746
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 63/183 (34%), Positives = 102/183 (55%), Gaps = 24/183 (13%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D + + ++ Y G++ AR+ F + ++D V W AMI GY + EA++LF M+
Sbjct: 288 DSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMR 347
Query: 75 TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVE 113
+ +R D+ T +L+ ++++VG AL+DMY KCGD++
Sbjct: 348 IAGMRPDKITLAGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLD 407
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR--ASIRLDEVTYVGVLSA 171
KA VF KM K+ +W A+I GLA +G GD A+ F Q++R ++ D++T++GVLSA
Sbjct: 408 KAIEVFRKMPCKNVASWNALICGLAFNGRGDEAIQHF-QLMRNEEGLKPDDITFIGVLSA 466
Query: 172 CTH 174
C H
Sbjct: 467 CVH 469
Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 57/161 (35%), Positives = 81/161 (50%), Gaps = 22/161 (13%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR--------------R 80
AR+ F +P RD V W AM+ Y RV E +FR+M R
Sbjct: 206 ARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNVVTVAVVLAACR 265
Query: 81 DEFTTV--RILTTFN------NDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA 132
D+ V R + ++ D VG AL+ MY KCG++ +A+RVF ++ KD W A
Sbjct: 266 DQGDLVLGRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNA 325
Query: 133 MIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
MI G A +G + A+ +F M A +R D++T GVLSAC+
Sbjct: 326 MITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACS 366
>gi|222622042|gb|EEE56174.1| hypothetical protein OsJ_05117 [Oryza sativa Japonica Group]
Length = 545
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 67/192 (34%), Positives = 100/192 (52%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M KD ++W +++ GY+ VD A +F QMP + V WTA+I G+++ +
Sbjct: 173 ARTVFDRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQP 232
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
+AL LF +M R + T V +L+ +I V AL
Sbjct: 233 IQALELFGKMLLEGHRPNHITIVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNAL 292
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY K G + A VF ++ KD FTWT MI + G+G A+++F MLR+ I +
Sbjct: 293 MDMYAKSGSIASAFSVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNS 352
Query: 163 VTYVGVLSACTH 174
VT+V VLSAC+H
Sbjct: 353 VTFVSVLSACSH 364
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 58/212 (27%), Positives = 94/212 (44%), Gaps = 53/212 (25%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
N+ IS I Y G+ A + F ++P D + +T+++ +L+++ +A+++F
Sbjct: 51 NQQSIS-CKIFRSYAEFGRPADAGRLFDEIPHPDIISFTSLMSLHLKLDHHWKAISVFSH 109
Query: 73 MQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGD 111
S R D F V L+ ++++ V AL+DMYC+CG
Sbjct: 110 AIASGHRPDGFAAVGALSASGGLGDQRIGSVVHGLIFRCGLDSELVVCNALVDMYCRCGK 169
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLA--------------------------ISGHGD- 144
E A+ VF +ML KD+ TW +M+ G I+GH
Sbjct: 170 FEPARTVFDRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQD 229
Query: 145 ----TALDMFSQMLRASIRLDEVTYVGVLSAC 172
AL++F +ML R + +T VGVLSAC
Sbjct: 230 KQPIQALELFGKMLLEGHRPNHITIVGVLSAC 261
>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
Length = 649
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 61/192 (31%), Positives = 103/192 (53%), Gaps = 22/192 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M ++D +SW T+++GY + G + F +M + V W +I Y++
Sbjct: 200 ARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKM-KLGNVTWNVIIAAYMQNGHA 258
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
+EA++ F +M+ N + T V +L F ++ VG +L
Sbjct: 259 KEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSL 318
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMY KCG ++ ++++F +M KD +W AM+ G A+ GHGD A+ +FS M + +++D
Sbjct: 319 IDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDS 378
Query: 163 VTYVGVLSACTH 174
V++V VLSAC H
Sbjct: 379 VSFVSVLSACRH 390
Score = 85.5 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 50/159 (31%), Positives = 81/159 (50%), Gaps = 19/159 (11%)
Query: 18 SWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-QTS 76
S T +++ Y + D+AR F P +LW +MI Y R ++ EAL ++ M +
Sbjct: 85 SITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKG 144
Query: 77 NIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVG 136
+ RD +F+G L+DMY K GD+++A+ VF KM ++D W AMI G
Sbjct: 145 GLERD--------------VFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAG 190
Query: 137 LAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
L+ S A +F QM + D+V++ +++ HN
Sbjct: 191 LSQSEDPYVARRVFDQM----VDQDDVSWGTMMAGYAHN 225
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 26/177 (14%)
Query: 4 ALEIFGNMKNK-----DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYL 58
ALE++ M K DV +V Y G + AR+ F +MP+RD V W AMI G
Sbjct: 133 ALEMYYCMVEKGGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLS 192
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTTF-NNDIFVGIALIDMYCKCGDVEKAQR 117
+ A +F +M + +D+ + ++ + +N FV + + K G+V
Sbjct: 193 QSEDPYVARRVFDQM----VDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNV----- 243
Query: 118 VFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
TW +I +GH A+ F QM + + VT+V VL A +
Sbjct: 244 -----------TWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAY 289
Score = 36.2 bits (82), Expect = 5.0, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDG 56
+ ++ ++F M +KD +SW ++SGY G D A F+ M E D V + +++
Sbjct: 328 LDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSA 387
Query: 57 YLRVNRFREALTLFREM 73
E +F M
Sbjct: 388 CRHAGLVEEGRKIFHSM 404
>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
Length = 797
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 98/192 (51%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A EIF M +D++SW I+SGY+N +D A+ +F +MPE++ + W MI G ++
Sbjct: 347 AQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFA 406
Query: 64 REALTLFREMQTSNIRRDEFT------TVRILTT---------------FNNDIFVGIAL 102
EAL F M+ ++ + +L + + + + G AL
Sbjct: 407 EEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNAL 466
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I MY +CG V+ A +F M D +W AMI L G G A+++F +ML+ I D
Sbjct: 467 ITMYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDR 526
Query: 163 VTYVGVLSACTH 174
++++ V+SAC+H
Sbjct: 527 ISFLTVISACSH 538
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 88/183 (48%), Gaps = 25/183 (13%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A ++F M N+D +SWTTI++GY+ +D A+++ ++ V W AMI GY
Sbjct: 208 MAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHR 267
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN-----------------------DIF 97
+ EA +FR+M S I+ DEFT +++ N D+
Sbjct: 268 GLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVA 327
Query: 98 VGI--ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155
+ + ALI Y KCG V+ AQ +F KM +D +W ++ G D A F++M
Sbjct: 328 MPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPE 387
Query: 156 ASI 158
+I
Sbjct: 388 KNI 390
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 98/239 (41%), Gaps = 68/239 (28%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYL 58
+ +A +F + D+++ TT+++ Y G + ++R+ F+ P RD V + AMI Y
Sbjct: 64 LNYARYLFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYS 123
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRIL------------------------TTFNN 94
+ A+ LF +MQ N R D +T +L T F
Sbjct: 124 HNHDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVT 183
Query: 95 DIFVGIALIDMYCKCGD---------VEKAQRVFWKMLRKDKFTWTAMIVGLA------- 138
+ ALI Y KC + +A+++F +M +D+ +WT +I G
Sbjct: 184 SVLN--ALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDA 241
Query: 139 -------------------ISGHGD-----TALDMFSQMLRASIRLDEVTYVGVLSACT 173
ISG+ A +MF +M+ + I+LDE T+ V+S C
Sbjct: 242 AKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCA 300
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 68/170 (40%), Gaps = 24/170 (14%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+++ Y G VD A F MP D + W AMI + + +A+ LF EM I
Sbjct: 464 NALITMYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGIL 523
Query: 80 RDEFTTVRILTTFNNDIFV--------------GIA--------LIDMYCKCGDVEKAQR 117
D + + +++ ++ V G+ +ID+ C+ G +A+
Sbjct: 524 PDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKE 583
Query: 118 VFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYV 166
V M W A++ G I G+ D ++ ++ + D TYV
Sbjct: 584 VMESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAERLFELKPQHDG-TYV 632
>gi|115463111|ref|NP_001055155.1| Os05g0307200 [Oryza sativa Japonica Group]
gi|113578706|dbj|BAF17069.1| Os05g0307200 [Oryza sativa Japonica Group]
Length = 767
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 63/183 (34%), Positives = 102/183 (55%), Gaps = 24/183 (13%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D + + ++ Y G++ AR+ F + ++D V W AMI GY + EA++LF M+
Sbjct: 288 DSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMR 347
Query: 75 TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVE 113
+ +R D+ T +L+ ++++VG AL+DMY KCGD++
Sbjct: 348 IAGMRPDKITLAGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLD 407
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR--ASIRLDEVTYVGVLSA 171
KA VF KM K+ +W A+I GLA +G GD A+ F Q++R ++ D++T++GVLSA
Sbjct: 408 KAIEVFRKMPCKNVASWNALICGLAFNGRGDEAIQHF-QLMRNEEGLKPDDITFIGVLSA 466
Query: 172 CTH 174
C H
Sbjct: 467 CVH 469
Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 57/161 (35%), Positives = 81/161 (50%), Gaps = 22/161 (13%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR--------------R 80
AR+ F +P RD V W AM+ Y RV E +FR+M R
Sbjct: 206 ARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNVVTVAVVLAACR 265
Query: 81 DEFTTV--RILTTFN------NDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA 132
D+ V R + ++ D VG AL+ MY KCG++ +A+RVF ++ KD W A
Sbjct: 266 DQGDLVLGRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNA 325
Query: 133 MIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
MI G A +G + A+ +F M A +R D++T GVLSAC+
Sbjct: 326 MITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACS 366
>gi|255540955|ref|XP_002511542.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550657|gb|EEF52144.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 434
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 100/195 (51%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A +IF + KD IS+ +++GY G V AR+ F M ER V W AMI Y
Sbjct: 147 LGSARKIFDGILVKDPISYNCLITGYSKAGDVIAARRLFDSMTERTVVSWNAMISCYAHN 206
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTF------------------NN---DIFVG 99
E L F MQ +I +E T V +L+ NN ++ V
Sbjct: 207 GDLNEGLKTFERMQAEDISPNEITLVTLLSICAKLGDLEMGLRIKKYIEDNNLCVNMIVS 266
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
A+++MY KCG V+ A++ F +M ++D W+AMI G A +G + AL++F M R ++
Sbjct: 267 TAILEMYVKCGAVDDARKEFDRMGQRDIVAWSAMIAGYAQNGRSNEALELFECMRREKVK 326
Query: 160 LDEVTYVGVLSACTH 174
++VT V VLSAC
Sbjct: 327 PNDVTLVSVLSACVQ 341
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 91/170 (53%), Gaps = 21/170 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
++I T I+ Y+ G VD AR+ F +M +RD V W+AMI GY + R EAL LF M+
Sbjct: 262 NMIVSTAILEMYVKCGAVDDARKEFDRMGQRDIVAWSAMIAGYAQNGRSNEALELFECMR 321
Query: 75 TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVE 113
++ ++ T V +L+ ++++V AL+ MY KCG++
Sbjct: 322 REKVKPNDVTLVSVLSACVQLGSVEMGNYIGSYVESQDLASNVYVASALVGMYSKCGNIS 381
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEV 163
KA+ VF K +KD TW +MIVGLA++G A+ ++ M A L +V
Sbjct: 382 KAREVFGKTPQKDIVTWNSMIVGLAVNGFAKDAIALYRNMKEADPALMQV 431
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 85/177 (48%), Gaps = 25/177 (14%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T +V +N +D ARQ F Q+P+ +L+ ++I Y +++ ++AL F M S+ R
Sbjct: 34 TVLVRKLLNLSDIDYARQLFDQVPQPGQILYNSLISTYSKLSLHKDALKTFFSMHHSDTR 93
Query: 80 RDEFT---------------------TVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
FT ++ ++ + +++V +L+D Y K G++ A+++
Sbjct: 94 LSCFTGPPVIKACSSLLAIDVGKQVHSLIVICGIDCNVYVQTSLMDFYAKIGELGSARKI 153
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
F +L KD ++ +I G + +G A +F M ++ V++ ++S HN
Sbjct: 154 FDGILVKDPISYNCLITGYSKAGDVIAARRLFDSMTERTV----VSWNAMISCYAHN 206
>gi|356518597|ref|XP_003527965.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g21470-like [Glycine max]
Length = 535
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 95/195 (48%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A E+F M ++ W++++ GY +G V A F +P R+ +W +MI GY++
Sbjct: 192 MEAAREVFEMMPERNCFVWSSMIHGYFKKGNVTEAAAVFDWVPVRNLEIWNSMIAGYVQN 251
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVG 99
+AL F M DEFT V +L+ + FV
Sbjct: 252 GFGEKALLAFEGMGAEGFEPDEFTVVSVLSACAQLGHLDVGKQIHHMIEHKGIVVNPFVL 311
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
L+DMY KCGD+ A+ VF K+ F W AMI G AI+G L+ F +M ++IR
Sbjct: 312 SGLVDMYAKCGDLVNARLVFEGFTEKNIFCWNAMISGFAINGKCSEVLEFFGRMEESNIR 371
Query: 160 LDEVTYVGVLSACTH 174
D +T++ VLSAC H
Sbjct: 372 PDGITFLTVLSACAH 386
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 84/187 (44%), Gaps = 17/187 (9%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M ++V++W ++SGY+ G + A F +M + V W+ MI G+ R
Sbjct: 100 ARNLFDTMPERNVVTWNAMISGYLRNGDTESAYLVFEKMQGKTQVTWSQMIGGFARNGDI 159
Query: 64 REALTLFREM--QTSNI-----------RRDEFTTVRILTTF--NNDIFVGIALIDMYCK 108
A LF E+ + N+ R E R + + FV ++I Y K
Sbjct: 160 ATARRLFDEVPHELKNVVTWTVMVDGYARIGEMEAAREVFEMMPERNCFVWSSMIHGYFK 219
Query: 109 CGDVEKAQRVF-WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVG 167
G+V +A VF W +R + W +MI G +G G+ AL F M DE T V
Sbjct: 220 KGNVTEAAAVFDWVPVRNLEI-WNSMIAGYVQNGFGEKALLAFEGMGAEGFEPDEFTVVS 278
Query: 168 VLSACTH 174
VLSAC
Sbjct: 279 VLSACAQ 285
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 18/110 (16%)
Query: 44 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALI 103
E D ++ TA++ Y + R+A LF M N+ T+N A+I
Sbjct: 78 ESDVIIGTALLTTYSKCGVVRDARNLFDTMPERNV-----------VTWN-------AMI 119
Query: 104 DMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
Y + GD E A VF KM K + TW+ MI G A +G TA +F ++
Sbjct: 120 SGYLRNGDTESAYLVFEKMQGKTQVTWSQMIGGFARNGDIATARRLFDEV 169
>gi|297600128|ref|NP_001048529.2| Os02g0818800 [Oryza sativa Japonica Group]
gi|255671357|dbj|BAF10443.2| Os02g0818800, partial [Oryza sativa Japonica Group]
Length = 601
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 28/183 (15%)
Query: 19 WTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 78
WTT+VSGY + DIA++ F +MPE+D V WTA+I G++R R++EA+ LF EM+ +
Sbjct: 296 WTTMVSGYARAQEFDIAQRLFHEMPEKDTVAWTALIGGFVRAGRYKEAVVLFEEMEEAGF 355
Query: 79 RRDEFTTVRILTT----------------------FNNDIFVGIALIDMYCKCGDVEKAQ 116
DE T V +L+ N + + +DMY K G ++ AQ
Sbjct: 356 EADEATIVTVLSACVGYGNIDLAKRLHCLVGRDGLINRNAKLATTFVDMYAKHGCIQTAQ 415
Query: 117 RVFWKMLRKDKFT----WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
VF + D F + AMI GLA G+ A+ +F +M + D++T+V VLSAC
Sbjct: 416 EVFSGV--DDDFKTLELFNAMINGLARCKFGEKAIALFDEMGSLGLHPDKITFVCVLSAC 473
Query: 173 THN 175
H+
Sbjct: 474 RHS 476
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 56/215 (26%), Positives = 83/215 (38%), Gaps = 57/215 (26%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV + +++ Y + G +AR F +MP RD V + +I Y+ +A +FR M
Sbjct: 155 DVFAANSLLHFYGSFGLHSLARNLFDEMPARDTVSFNTLISSYVHSCCSSDAFEVFRIMV 214
Query: 75 TSNIRRDEFTTVRILTT--------------------FNNDIF----VGIALIDMYCKCG 110
S +R D +T ++ +F V +L+D Y KC
Sbjct: 215 DSGLRPDGWTVTALIGACAELQDLRAAKAVHGVARRMLEPRVFHSGEVATSLVDAYVKCR 274
Query: 111 DVEK---------------------------------AQRVFWKMLRKDKFTWTAMIVGL 137
+E AQR+F +M KD WTA+I G
Sbjct: 275 SMELARQVFDLAGDNARNARLWTTMVSGYARAQEFDIAQRLFHEMPEKDTVAWTALIGGF 334
Query: 138 AISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+G A+ +F +M A DE T V VLSAC
Sbjct: 335 VRAGRYKEAVVLFEEMEEAGFEADEATIVTVLSAC 369
>gi|242032157|ref|XP_002463473.1| hypothetical protein SORBIDRAFT_01g000443 [Sorghum bicolor]
gi|241917327|gb|EER90471.1| hypothetical protein SORBIDRAFT_01g000443 [Sorghum bicolor]
Length = 438
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 100/194 (51%), Gaps = 22/194 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A F M +++V+SW ++ Y + G + AR F MP+R+ W++M+ G + R
Sbjct: 154 ARHFFDAMPDRNVVSWNAMLGAYASAGMLSQARDLFDAMPQRNAATWSSMLTGLVLSGRC 213
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN----------------------DIFVGIA 101
EAL +F +M S +E V +++ + + A
Sbjct: 214 GEALRVFHDMVRSGAVPNEPALVSVVSACAQLRSLEYGAWVHGYAEQELQGAMSVILASA 273
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
+IDMY KCG + A RVF M ++ ++W AMI GLA++G AL + +M A +R +
Sbjct: 274 IIDMYGKCGGIHSAVRVFAAMPVRNVYSWNAMIAGLAMNGGERQALSLLWKMQMAGVRPN 333
Query: 162 EVTYVGVLSACTHN 175
++T++G+LSAC+H+
Sbjct: 334 DITFIGLLSACSHS 347
>gi|125540362|gb|EAY86757.1| hypothetical protein OsI_08137 [Oryza sativa Indica Group]
Length = 493
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 98/190 (51%), Gaps = 22/190 (11%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 67
F M K+V+SW T++ Y G + AR+ F +MP R+ W +MI G L+ + EAL
Sbjct: 162 FDAMPEKNVVSWNTMLGAYARAGMLPKARKLFDRMPSRNAATWGSMITGLLQSDHCEEAL 221
Query: 68 TLFREMQTSNIRRDEFTTVRILTTFNN----------------------DIFVGIALIDM 105
+F +M + +E V ++ + A++DM
Sbjct: 222 RVFSDMVACGVVPNEPALVSTVSACTQLRWMEHGTWVHGYAERELNGAMSAVLATAIVDM 281
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y KCG + A RVF M ++ ++W +MI GLA++G AL +F +M A +R +++T+
Sbjct: 282 YGKCGSIRDAVRVFAAMPVRNIYSWNSMIAGLAMNGSERQALSLFWKMQLAGVRPNDITF 341
Query: 166 VGVLSACTHN 175
+G+LSAC+H+
Sbjct: 342 IGLLSACSHS 351
>gi|218186297|gb|EEC68724.1| hypothetical protein OsI_37217 [Oryza sativa Indica Group]
Length = 387
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 109/226 (48%), Gaps = 55/226 (24%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGY-------------------------------INR 29
+G A + F M +K+ +SW +V + +
Sbjct: 32 LGDARKAFDEMPDKNAVSWNALVGAHRAAADWMGADRVSQAMPVRNLSWWNAEIARNVRI 91
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G +D A + F++MPERD V W ++I GY ++ ++ +AL +F+EMQ + I+ E T V +L
Sbjct: 92 GYMDEAARIFSEMPERDAVSWNSLISGYTKLGKYTQALGIFQEMQENGIQPTELTLVLVL 151
Query: 90 TTFNN---------------------DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
D VG ALIDMY KCG ++ A++VF +M +D
Sbjct: 152 GACAKIGKLDLGTNIHRNLQNKGIVADGLVGNALIDMYAKCGMLDLAKKVFDRMSMRDIT 211
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
W AMIVG ++ G AL++F M I + VT++GVL+AC+H
Sbjct: 212 CWNAMIVGFSVHGCSREALELFDSM---KIEPNPVTFLGVLTACSH 254
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 80/186 (43%), Gaps = 39/186 (20%)
Query: 7 IFGNMKNKDVIS----WTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
I N++NK +++ ++ Y G +D+A++ F +M RD W AMI G+
Sbjct: 166 IHRNLQNKGIVADGLVGNALIDMYAKCGMLDLAKKVFDRMSMRDITCWNAMIVGFSVHGC 225
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIA--------------------- 101
REAL LF M+ I + T + +LT ++ V
Sbjct: 226 SREALELFDSMK---IEPNPVTFLGVLTACSHGGLVNEGRKYFNSMIEDYRIVPYVKHYG 282
Query: 102 -LIDMYCKCGDVEKAQRVFWKMLRKDKFT-----WTAMIVGLAISGHGDTALDMFSQMLR 155
+IDM C+ G +E+A + M++++ T W ++ + GH D A MF LR
Sbjct: 283 CMIDMLCRYGKIEEA----YLMIKENPSTASSVLWKMLLAACRVHGHIDLAY-MFFHELR 337
Query: 156 ASIRLD 161
I D
Sbjct: 338 ELILTD 343
>gi|222623920|gb|EEE58052.1| hypothetical protein OsJ_08887 [Oryza sativa Japonica Group]
Length = 779
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 28/183 (15%)
Query: 19 WTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 78
WTT+VSGY + DIA++ F +MPE+D V WTA+I G++R R++EA+ LF EM+ +
Sbjct: 272 WTTMVSGYARAQEFDIAQRLFHEMPEKDTVAWTALIGGFVRAGRYKEAVVLFEEMEEAGF 331
Query: 79 RRDEFTTVRILTT----------------------FNNDIFVGIALIDMYCKCGDVEKAQ 116
DE T V +L+ N + + +DMY K G ++ AQ
Sbjct: 332 EADEATIVTVLSACVGYGNIDLAKRLHCLVGRDGLINRNAKLATTFVDMYAKHGCIQTAQ 391
Query: 117 RVFWKMLRKDKFT----WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
VF + D F + AMI GLA G+ A+ +F +M + D++T+V VLSAC
Sbjct: 392 EVFSGV--DDDFKTLELFNAMINGLARCKFGEKAIALFDEMGSLGLHPDKITFVCVLSAC 449
Query: 173 THN 175
H+
Sbjct: 450 RHS 452
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 56/215 (26%), Positives = 83/215 (38%), Gaps = 57/215 (26%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV + +++ Y + G +AR F +MP RD V + +I Y+ +A +FR M
Sbjct: 131 DVFAANSLLHFYGSFGLHSLARNLFDEMPARDTVSFNTLISSYVHSCCSSDAFEVFRIMV 190
Query: 75 TSNIRRDEFTTVRILTT--------------------FNNDIF----VGIALIDMYCKCG 110
S +R D +T ++ +F V +L+D Y KC
Sbjct: 191 DSGLRPDGWTVTALIGACAELQDLRAAKAVHGVARRMLEPRVFHSGEVATSLVDAYVKCR 250
Query: 111 DVEK---------------------------------AQRVFWKMLRKDKFTWTAMIVGL 137
+E AQR+F +M KD WTA+I G
Sbjct: 251 SMELARQVFDLAGDNARNARLWTTMVSGYARAQEFDIAQRLFHEMPEKDTVAWTALIGGF 310
Query: 138 AISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+G A+ +F +M A DE T V VLSAC
Sbjct: 311 VRAGRYKEAVVLFEEMEEAGFEADEATIVTVLSAC 345
>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
Length = 553
Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats.
Identities = 64/190 (33%), Positives = 99/190 (52%), Gaps = 25/190 (13%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVL--WTAMIDGYLRVNRFRE 65
FG N + ++V Y+ +D A + F +M ERD + WTA++ GY R+ + +
Sbjct: 191 FGQKSN--TVVENSLVEMYVKCDSLDDAHRVFEEMTERDATIFSWTAIVSGYARIGCYAD 248
Query: 66 ALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIALID 104
AL FR MQ I DE + V +L F +I V ALI+
Sbjct: 249 ALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIE 308
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVT 164
MY KCG +++ +R+F +M +D +W+ MIVGLA G A+++F +M +A I +T
Sbjct: 309 MYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIIT 368
Query: 165 YVGVLSACTH 174
+VG+L+AC H
Sbjct: 369 FVGLLTACAH 378
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 43/171 (25%), Positives = 66/171 (38%), Gaps = 53/171 (30%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F MK +DVISW+T++ G N G R REA
Sbjct: 322 LFDQMKERDVISWSTMIVGLANHG-------------------------------RAREA 350
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKD 126
+ LF+EMQ + I T V +LT + G + + R F M R
Sbjct: 351 IELFQEMQKAKIEPSIITFVGLLTACAH--------------AGLLNEGLRYFESMKRDY 396
Query: 127 KFT-----WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+ ++ L +SG D AL++ +M R + D + +LS+C
Sbjct: 397 NIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPR---KPDSPIWGSLLSSC 444
>gi|356558692|ref|XP_003547637.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g17630-like [Glycine max]
Length = 696
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 106/205 (51%), Gaps = 31/205 (15%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERD----------YVLW 50
MG A ++F +KNK+++SW ++S Y G D A F M + D + W
Sbjct: 319 MGDAHKVFLEIKNKNLVSWNALISSYAESGLCDEAYAAFLHMEKSDSDDHSLVRPNVISW 378
Query: 51 TAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT------------------- 91
+A+I G+ R ++L LFR+MQ + + + T +L+
Sbjct: 379 SAVISGFAYKGRGEKSLELFRQMQLAKVMANCVTISSVLSVCAELAALNLGRELHGYAIR 438
Query: 92 --FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDM 149
+++I VG LI+MY KCGD ++ VF + +D +W ++I G + G G+ AL
Sbjct: 439 NMMSDNILVGNGLINMYMKCGDFKEGHLVFDNIEGRDLISWNSLIGGYGMHGLGENALRT 498
Query: 150 FSQMLRASIRLDEVTYVGVLSACTH 174
F++M+RA ++ D +T+V +LSAC+H
Sbjct: 499 FNEMIRARMKPDNITFVAILSACSH 523
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 90/200 (45%), Gaps = 33/200 (16%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGY-INRGQVDIARQYFAQMP----ERDYVLWTAMIDGYL 58
A ++F M + ++SW T+VSGY +NR + +R F +M + + V WT+++ +
Sbjct: 186 ARQLFDGMFVRSIVSWNTMVSGYALNRDSLGASR-VFKRMELEGLQPNSVTWTSLLSSHA 244
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIF 97
R + E L LF+ M+T I +L+ + + +F
Sbjct: 245 RCGLYDETLELFKVMRTRGIEIGAEALAVVLSVCADMAEVDWGKEIHGYVVKGGYEDYLF 304
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
V ALI Y K + A +VF ++ K+ +W A+I A SG D A F M ++
Sbjct: 305 VKNALIGTYGKHQHMGDAHKVFLEIKNKNLVSWNALISSYAESGLCDEAYAAFLHMEKSD 364
Query: 158 ------IRLDEVTYVGVLSA 171
+R + +++ V+S
Sbjct: 365 SDDHSLVRPNVISWSAVISG 384
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 24/161 (14%)
Query: 35 ARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFT---TVRI 88
AR+ F +P +LW ++I + + AL L+ EM+ D FT +R
Sbjct: 82 ARKVFDAIPLESLHHLLLWNSIIRANVSHGYHQHALELYVEMRKLGFLPDGFTLPLVIRA 141
Query: 89 LTT------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTW 130
++ F N + V L+ MY K G +E A+++F M + +W
Sbjct: 142 CSSLGSSYLCRIVHCHALQMGFRNHLHVVNELVGMYGKLGRMEDARQLFDGMFVRSIVSW 201
Query: 131 TAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
M+ G A++ A +F +M ++ + VT+ +LS+
Sbjct: 202 NTMVSGYALNRDSLGASRVFKRMELEGLQPNSVTWTSLLSS 242
>gi|357441857|ref|XP_003591206.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480254|gb|AES61457.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 490
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +++V+ W +++G+ G ++I + F +M +R V W MI + +
Sbjct: 162 ANKVFDEMLHREVVVWNIMINGFCKMGDLEIGLKLFKRMGQRSVVSWNLMISCLAQRKKD 221
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT----------------------FNNDIFVGIA 101
EA +FREM D+ T V +L I VG +
Sbjct: 222 GEAFGIFREMLEQGFEPDDATLVTVLPVCARLGDVDAGEWIHSYADGKGLLRKVISVGNS 281
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+D YCKCG++E A +VF +M +K+ +W AMI GL ++G G+ +++F +M R +
Sbjct: 282 LVDFYCKCGNLEAAWKVFNEMTKKNVVSWNAMISGLGLNGKGELGVELFEKMARKGVTPS 341
Query: 162 EVTYVGVLSACTH 174
+ T+VGVL+ C H
Sbjct: 342 DSTFVGVLACCAH 354
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 22/150 (14%)
Query: 31 QVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ-TSNIRRDEFTTVRIL 89
Q+ A F + +L+ ++I + F ++ F M+ T NI D FT +L
Sbjct: 56 QIPYATTIFNHTHHPNILLFNSIIKAHSSFPPFHQSFHFFNLMKMTHNILPDNFTFPPLL 115
Query: 90 --TTFNNDIFVG-------------------IALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
T++ D +G I L+++Y CG +E A +VF +ML ++
Sbjct: 116 KATSYLRDYDLGQCLHAHVTALGFYRHSPVEIGLLEVYSNCGKMEDANKVFDEMLHREVV 175
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASI 158
W MI G G + L +F +M + S+
Sbjct: 176 VWNIMINGFCKMGDLEIGLKLFKRMGQRSV 205
>gi|302816404|ref|XP_002989881.1| hypothetical protein SELMODRAFT_23653 [Selaginella moellendorffii]
gi|300142447|gb|EFJ09148.1| hypothetical protein SELMODRAFT_23653 [Selaginella moellendorffii]
Length = 353
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 100/194 (51%), Gaps = 23/194 (11%)
Query: 4 ALEIFGNMK-NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
ALE+F +M+ K+V+SWT IV+ ++D AR F +MP R+ V W A+I GYL +R
Sbjct: 61 ALEVFQSMRCRKNVVSWTAIVAALAQNKRLDQARDLFNRMPIRNVVSWNAIITGYLDDDR 120
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIA 101
+A+ L+ M+ + D T V +L + DI VG A
Sbjct: 121 PPDAIDLYYRMRQEGVPADRVTFVAMLEAAASITNLVLGRVIHSHTQEEGIDGDILVGTA 180
Query: 102 LIDMYCKCGDVEKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
L+ MY +CG E A R F M R D W+A+I + G+G AL++F ML I
Sbjct: 181 LLSMYGRCGCTEMAIRTFHGMPPRHDVVVWSALIASFSHCGNGGKALEVFHGMLLDGILP 240
Query: 161 DEVTYVGVLSACTH 174
+ VT V VLSAC+H
Sbjct: 241 NGVTLVSVLSACSH 254
>gi|125606358|gb|EAZ45394.1| hypothetical protein OsJ_30043 [Oryza sativa Japonica Group]
Length = 494
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 102/194 (52%), Gaps = 22/194 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A++IF +MK + SW +++ + G ++ A F PE + + WTAMI G+ R +
Sbjct: 126 AVQIFESMKTRTTASWNSLIDAHARFGYIEQAALLFESAPETNIISWTAMIGGFARNSLT 185
Query: 64 REALTLFREMQTSN-IRRDEFTTVRILTT---------------------FNNDIFVGIA 101
EAL F +M T I+ D+FT +L F + ++V
Sbjct: 186 SEALAHFVKMLTQEYIQPDDFTFGAVLHACASAPCLASGRMVHSCAFQGGFASYLYVANN 245
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+DMY KCGDVE A VF + +KD +W M+ G AI+G AL+++ M ++ D
Sbjct: 246 LVDMYAKCGDVEGANNVFDAIHQKDLVSWNTMLFGFAINGLPKEALEVYEIMTYHNVSPD 305
Query: 162 EVTYVGVLSACTHN 175
EVT+ G+L+AC+H+
Sbjct: 306 EVTFTGLLTACSHS 319
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 87/216 (40%), Gaps = 53/216 (24%)
Query: 11 MKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 70
M ++ +SW +++ ++ G +++A + F +MP + V W ++ G+ R ++ L LF
Sbjct: 1 MPERNALSWCSLLHAFVVSGHMELAHELFDEMPSKSNVAWNTLLMGHSRSGNAKQCLALF 60
Query: 71 REMQTSNIRRDEFT---------------------TVRILTTFNNDIFVGIALIDMYCK- 108
+M S + D+ T V + + +N V +LI Y K
Sbjct: 61 NQMWMSGLTCDDATLCILVDACAELPDPSTGFAIHKVVVQSGWNGIPEVNNSLISFYTKF 120
Query: 109 ----C--------------------------GDVEKAQRVFWKMLRKDKFTWTAMIVGLA 138
C G +E+A +F + +WTAMI G A
Sbjct: 121 SLLDCAVQIFESMKTRTTASWNSLIDAHARFGYIEQAALLFESAPETNIISWTAMIGGFA 180
Query: 139 ISGHGDTALDMFSQML-RASIRLDEVTYVGVLSACT 173
+ AL F +ML + I+ D+ T+ VL AC
Sbjct: 181 RNSLTSEALAHFVKMLTQEYIQPDDFTFGAVLHACA 216
>gi|413944078|gb|AFW76727.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
Length = 794
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 65/193 (33%), Positives = 98/193 (50%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F M KDV SWT++VS Y G ++ A + F ++P R+ V W+ M+ Y N
Sbjct: 287 AKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMP 346
Query: 64 REALTLFREMQTSNIRRDEFTTVRILT-----------TFNNDIFV-----------GIA 101
EA+ +F +M + + + T V +L+ T+ D ++ A
Sbjct: 347 DEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNA 406
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
IDM+ KCGDV A R+F M K+ +W MI+ + G + AL +F + I D
Sbjct: 407 FIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPD 466
Query: 162 EVTYVGVLSACTH 174
E TY+GVLSAC+H
Sbjct: 467 EATYIGVLSACSH 479
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 47/199 (23%), Positives = 88/199 (44%), Gaps = 34/199 (17%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMID-------- 55
A ++F M ++DV+SWTT++ GY G D A + F +M + V W +
Sbjct: 185 ARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESV-WPNEVTLVAAASAA 243
Query: 56 --------------------GYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNND 95
G + VN + +F + ++ F + I D
Sbjct: 244 GQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPI-----KD 298
Query: 96 IFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155
++ +++ Y KCGD+E A ++F ++ ++ +W+ M+ + + D A+ +F+ M+
Sbjct: 299 VYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIA 358
Query: 156 ASIRLDEVTYVGVLSACTH 174
A + + T V VLSAC
Sbjct: 359 AGVEPIDATLVSVLSACAQ 377
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 22/146 (15%)
Query: 47 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT--------------- 91
Y+L T M+ G+LR + ALTLFR + + D T V +
Sbjct: 98 YMLAT-MMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVFAVKAAATSSSPTEAIHCVA 156
Query: 92 -----FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTA 146
+ G AL+ MY + A+++F +M +D +WT +I G A G D A
Sbjct: 157 FKRGFIGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEA 216
Query: 147 LDMFSQMLRA-SIRLDEVTYVGVLSA 171
+F +M+ A S+ +EVT V SA
Sbjct: 217 WRVFCRMVVAESVWPNEVTLVAAASA 242
>gi|413944077|gb|AFW76726.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
Length = 646
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 65/193 (33%), Positives = 98/193 (50%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F M KDV SWT++VS Y G ++ A + F ++P R+ V W+ M+ Y N
Sbjct: 287 AKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMP 346
Query: 64 REALTLFREMQTSNIRRDEFTTVRILT-----------TFNNDIFV-----------GIA 101
EA+ +F +M + + + T V +L+ T+ D ++ A
Sbjct: 347 DEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNA 406
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
IDM+ KCGDV A R+F M K+ +W MI+ + G + AL +F + I D
Sbjct: 407 FIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPD 466
Query: 162 EVTYVGVLSACTH 174
E TY+GVLSAC+H
Sbjct: 467 EATYIGVLSACSH 479
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 47/199 (23%), Positives = 88/199 (44%), Gaps = 34/199 (17%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMID-------- 55
A ++F M ++DV+SWTT++ GY G D A + F +M + V W +
Sbjct: 185 ARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESV-WPNEVTLVAAASAA 243
Query: 56 --------------------GYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNND 95
G + VN + +F + ++ F + I D
Sbjct: 244 GQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPI-----KD 298
Query: 96 IFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155
++ +++ Y KCGD+E A ++F ++ ++ +W+ M+ + + D A+ +F+ M+
Sbjct: 299 VYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIA 358
Query: 156 ASIRLDEVTYVGVLSACTH 174
A + + T V VLSAC
Sbjct: 359 AGVEPIDATLVSVLSACAQ 377
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 22/146 (15%)
Query: 47 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT--------------- 91
Y+L T M+ G+LR + ALTLFR + + D T V +
Sbjct: 98 YMLAT-MMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVFAVKAAATSSSPTEAIHCVA 156
Query: 92 -----FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTA 146
+ G AL+ MY + A+++F +M +D +WT +I G A G D A
Sbjct: 157 FKRGFIGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEA 216
Query: 147 LDMFSQMLRA-SIRLDEVTYVGVLSA 171
+F +M+ A S+ +EVT V SA
Sbjct: 217 WRVFCRMVVAESVWPNEVTLVAAASA 242
>gi|48716351|dbj|BAD22962.1| selenium-binding protein-like [Oryza sativa Japonica Group]
Length = 758
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 28/183 (15%)
Query: 19 WTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 78
WTT+VSGY + DIA++ F +MPE+D V WTA+I G++R R++EA+ LF EM+ +
Sbjct: 312 WTTMVSGYARAQEFDIAQRLFHEMPEKDTVAWTALIGGFVRAGRYKEAVVLFEEMEEAGF 371
Query: 79 RRDEFTTVRILTT----------------------FNNDIFVGIALIDMYCKCGDVEKAQ 116
DE T V +L+ N + + +DMY K G ++ AQ
Sbjct: 372 EADEATIVTVLSACVGYGNIDLAKRLHCLVGRDGLINRNAKLATTFVDMYAKHGCIQTAQ 431
Query: 117 RVFWKMLRKDKFT----WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
VF + D F + AMI GLA G+ A+ +F +M + D++T+V VLSAC
Sbjct: 432 EVFSGV--DDDFKTLELFNAMINGLARCKFGEKAIALFDEMGSLGLHPDKITFVCVLSAC 489
Query: 173 THN 175
H+
Sbjct: 490 RHS 492
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 56/215 (26%), Positives = 83/215 (38%), Gaps = 57/215 (26%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV + +++ Y + G +AR F +MP RD V + +I Y+ +A +FR M
Sbjct: 171 DVFAANSLLHFYGSFGLHSLARNLFDEMPARDTVSFNTLISSYVHSCCSSDAFEVFRIMV 230
Query: 75 TSNIRRDEFTTVRILTT--------------------FNNDIF----VGIALIDMYCKCG 110
S +R D +T ++ +F V +L+D Y KC
Sbjct: 231 DSGLRPDGWTVTALIGACAELQDLRAAKAVHGVARRMLEPRVFHSGEVATSLVDAYVKCR 290
Query: 111 DVEK---------------------------------AQRVFWKMLRKDKFTWTAMIVGL 137
+E AQR+F +M KD WTA+I G
Sbjct: 291 SMELARQVFDLAGDNARNARLWTTMVSGYARAQEFDIAQRLFHEMPEKDTVAWTALIGGF 350
Query: 138 AISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+G A+ +F +M A DE T V VLSAC
Sbjct: 351 VRAGRYKEAVVLFEEMEEAGFEADEATIVTVLSAC 385
>gi|297738075|emb|CBI27276.3| unnamed protein product [Vitis vinifera]
Length = 248
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 96/178 (53%), Gaps = 21/178 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ T+++ Y + G V AR F +MP V WT MI GY + N F+E L +FR MQ
Sbjct: 64 DIFVGNTLIAMYSSFGNVRAARCIFDEMPWHTAVSWTVMISGYAKNNCFKEGLQMFRLMQ 123
Query: 75 TSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVE 113
++ + DE V IL + + + LIDMY KCG ++
Sbjct: 124 STGLEPDEAILVSILCACAHLGAMEIGVWVHRYLDQLGHPLSVRLSTGLIDMYAKCGSLD 183
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
A+++F M ++D W AMI G+A++G GD AL +FS+M +A ++ D++T++ + +A
Sbjct: 184 IAKKLFDGMSQRDTICWNAMISGMAMNGDGDNALRLFSEMEKAGVKPDDITFIAIFTA 241
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 57/143 (39%), Gaps = 21/143 (14%)
Query: 53 MIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT--------------------- 91
MI ++ + + ++ +M + + D +T +L
Sbjct: 1 MIKAFVLKGKLINTIQIYSQMLENGLYPDNYTLPYVLKACAGLQSCHLGESAHGQSVKLG 60
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
F DIFVG LI MY G+V A+ +F +M +WT MI G A + L MF
Sbjct: 61 FWFDIFVGNTLIAMYSSFGNVRAARCIFDEMPWHTAVSWTVMISGYAKNNCFKEGLQMFR 120
Query: 152 QMLRASIRLDEVTYVGVLSACTH 174
M + DE V +L AC H
Sbjct: 121 LMQSTGLEPDEAILVSILCACAH 143
>gi|255571517|ref|XP_002526706.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534006|gb|EEF35728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 461
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 94/186 (50%), Gaps = 21/186 (11%)
Query: 10 NMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 69
N+ ++V T++V Y G ++ AR F M ERD V W+AMI GY ++AL L
Sbjct: 244 NVMARNVFVTTSLVDLYAKHGNMEKARCLFDGMAERDIVSWSAMIQGYASNGLPKDALDL 303
Query: 70 FREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIALIDMYCK 108
F +M + ++ D + V L T F + +G ALIDMY K
Sbjct: 304 FFKMLNAGLKPDHYAMVGFLCACARLGALELGDWGSNLMDRTEFFTNHVLGTALIDMYAK 363
Query: 109 CGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGV 168
CG + KA VF + KD+ W A I GLA++GH A +F QM R I+ D T+VG+
Sbjct: 364 CGSMAKAWEVFKGIKGKDRAVWNAAISGLAMNGHEKAAFGLFGQMERFGIQPDGNTFVGL 423
Query: 169 LSACTH 174
L CTH
Sbjct: 424 LCGCTH 429
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 102/194 (52%), Gaps = 30/194 (15%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+GF +F N T++VS Y G +D A + +PE + V WTA+I GY+ V
Sbjct: 143 LGFDCNLFVN---------TSLVSLYAKCGSIDDALKMLDLIPESNIVSWTAIISGYIGV 193
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
++REA+ LFR M + +R D FT V++L+ ++FV
Sbjct: 194 GKYREAIDLFRRMLETGLRPDSFTIVQVLSACIQIGDLANGEWIDRYITENVMARNVFVT 253
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
+L+D+Y K G++EKA+ +F M +D +W+AMI G A +G ALD+F +ML A ++
Sbjct: 254 TSLVDLYAKHGNMEKARCLFDGMAERDIVSWSAMIQGYASNGLPKDALDLFFKMLNAGLK 313
Query: 160 LDEVTYVGVLSACT 173
D VG L AC
Sbjct: 314 PDHYAMVGFLCACA 327
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 79/175 (45%), Gaps = 21/175 (12%)
Query: 19 WTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 78
W+ I+ + R F Q+ E D VL+ MI G + + F E++ + M+
Sbjct: 51 WSMIIRSSFDFNDTTYTRLIFNQIKEPDVVLYNTMIRGLVSSDCFTESIEFYYSMRKKGF 110
Query: 79 RRDEFT---------------------TVRILTTFNNDIFVGIALIDMYCKCGDVEKAQR 117
+ FT T+ + F+ ++FV +L+ +Y KCG ++ A +
Sbjct: 111 LPNNFTFPFVIKACARLLDFQLGIMMHTLVVKLGFDCNLFVNTSLVSLYAKCGSIDDALK 170
Query: 118 VFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+ + + +WTA+I G G A+D+F +ML +R D T V VLSAC
Sbjct: 171 MLDLIPESNIVSWTAIISGYIGVGKYREAIDLFRRMLETGLRPDSFTIVQVLSAC 225
>gi|52076160|dbj|BAD46673.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 678
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 65/194 (33%), Positives = 102/194 (52%), Gaps = 22/194 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A++IF +MK + SW +++ + G ++ A F PE + + WTAMI G+ R +
Sbjct: 310 AVQIFESMKTRTTASWNSLIDAHARFGYIEQAALLFESAPETNIISWTAMIGGFARNSLT 369
Query: 64 REALTLFREMQTSN-IRRDEFTTVRILTT---------------------FNNDIFVGIA 101
EAL F +M T I+ D+FT +L F + ++V
Sbjct: 370 SEALAHFVKMLTQEYIQPDDFTFGAVLHACASAPCLASGRMVHSCAFQGGFASYLYVANN 429
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+DMY KCGDVE A VF + +KD +W M+ G AI+G AL+++ M ++ D
Sbjct: 430 LVDMYAKCGDVEGANNVFDAIHQKDLVSWNTMLFGFAINGLPKEALEVYEIMTYHNVSPD 489
Query: 162 EVTYVGVLSACTHN 175
EVT+ G+L+AC+H+
Sbjct: 490 EVTFTGLLTACSHS 503
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 50/215 (23%), Positives = 87/215 (40%), Gaps = 53/215 (24%)
Query: 11 MKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 70
M ++ +SW +++ ++ G +++A + F +MP + V W ++ G+ R ++ L LF
Sbjct: 185 MPERNALSWCSLLHAFVVSGHMELAHELFDEMPSKSNVAWNTLLMGHSRSGNAKQCLALF 244
Query: 71 REMQTSNIRRDEFT---------------------TVRILTTFNNDIFVGIALIDMYCK- 108
+M S + D+ T V + + +N V +LI Y K
Sbjct: 245 NQMWMSGLTCDDATLCILVDACAELPDPSTGFAIHKVVVQSGWNGIPEVNNSLISFYTKF 304
Query: 109 ----C--------------------------GDVEKAQRVFWKMLRKDKFTWTAMIVGLA 138
C G +E+A +F + +WTAMI G A
Sbjct: 305 SLLDCAVQIFESMKTRTTASWNSLIDAHARFGYIEQAALLFESAPETNIISWTAMIGGFA 364
Query: 139 ISGHGDTALDMFSQML-RASIRLDEVTYVGVLSAC 172
+ AL F +ML + I+ D+ T+ VL AC
Sbjct: 365 RNSLTSEALAHFVKMLTQEYIQPDDFTFGAVLHAC 399
>gi|296086392|emb|CBI31981.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 66/189 (34%), Positives = 103/189 (54%), Gaps = 21/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+FG M KD+ T ++ Y N G +D+ + F Q+P++D VLW +IDGY + + +E+
Sbjct: 216 LFGEMCRKDLNVATALIDMYANAGFIDLGHKIFYQVPKKDVVLWNCLIDGYAKSDLLQES 275
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDM 105
L+L + M+ ++ + T V +L+ D +G AL+DM
Sbjct: 276 LSLLQLMKREQVKPNSSTLVGLLSACAAAGASSVGLCISNYVEEEQIALDAVLGTALVDM 335
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
YCKCG +EKA VF +M KD +WTAMI G + G A+ +F +M R +EVT+
Sbjct: 336 YCKCGFLEKAIDVFERMEIKDVKSWTAMISGYGVHGQAKNAIMIFHRMEVEGYRPNEVTF 395
Query: 166 VGVLSACTH 174
+ VL+AC+H
Sbjct: 396 LAVLNACSH 404
Score = 42.4 bits (98), Expect = 0.075, Method: Composition-based stats.
Identities = 30/150 (20%), Positives = 62/150 (41%), Gaps = 22/150 (14%)
Query: 33 DIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTF 92
D A F Q+P + ++ M+ GY + ++A +F+ ++ + D+F+ + L
Sbjct: 78 DYAASIFNQIPSPNLFMFNTMLRGYSISHHPKQAFVVFKGLRAQQMILDQFSFIPTLKAC 137
Query: 93 NND-------------------IFVGI--ALIDMYCKCGDVEKAQRVFWKMLRK-DKFTW 130
+ +F + AL+ YC CG + A ++F ++ K D +W
Sbjct: 138 ARELAYETGQGIHGVVVRSGHGLFTNVKNALLHFYCVCGRIGDAHQLFDEIPPKIDLVSW 197
Query: 131 TAMIVGLAISGHGDTALDMFSQMLRASIRL 160
++ G H +F +M R + +
Sbjct: 198 NTLLGGYLQVPHPTMVTCLFGEMCRKDLNV 227
Score = 37.7 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 18/146 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDY----VLWTAMIDGYLR 59
A+++F M+ KDV SWT ++SGY GQ A F +M Y V + A+++
Sbjct: 345 AIDVFERMEIKDVKSWTAMISGYGVHGQAKNAIMIFHRMEVEGYRPNEVTFLAVLNACSH 404
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119
E ++ +M +R F+ + +ID+ + G +E+A +
Sbjct: 405 GGMVVEGISFLEKM----VRE---------YGFSPKVEHYGCMIDLLGRAGLLEEAHNLI 451
Query: 120 WKM-LRKDKFTWTAMIVGLAISGHGD 144
+ + D W A++ + G+ D
Sbjct: 452 KSLPIEGDATGWRALLAACRVYGNVD 477
>gi|356574121|ref|XP_003555200.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Glycine max]
Length = 548
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 60/195 (30%), Positives = 111/195 (56%), Gaps = 23/195 (11%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
+A ++F +++ K+V+SW +++ GY G++ +A++ F M E+D W+++IDGY++
Sbjct: 167 WAQKVFDSIQQKNVVSWNSMLDGYAKCGEMVMAQKAFESMSEKDVRSWSSLIDGYVKAGE 226
Query: 63 FREALTLFREMQTSNIRRDEFTTV---------------RILTTFNND------IFVGIA 101
+ EA+ +F +MQ++ + +E T V R++ + D + + +
Sbjct: 227 YSEAMAIFEKMQSAGPKANEVTMVSVSCACAHMGALEKGRMIYKYIVDNGLPLTLVLQTS 286
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRK--DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
L+DMY KCG +E+A +F ++ + D W A+I GLA G + +L +F +M I
Sbjct: 287 LVDMYAKCGAIEEALLIFRRVSKSQTDVLIWNAVIGGLATHGLVEESLKLFKEMQIVGIC 346
Query: 160 LDEVTYVGVLSACTH 174
DEVTY+ +L+AC H
Sbjct: 347 PDEVTYLCLLAACAH 361
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 44/195 (22%), Positives = 85/195 (43%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE----RDYVLWTAMIDG 56
+ ++ +F + + + SW TI+ GY N + F +M DY+ + ++
Sbjct: 64 INYSYRVFSQLSSPTIFSWNTIIRGYSNSKNPIQSLSIFLKMLRLGVAPDYLTYPFLVKA 123
Query: 57 YLRVNRFREALTLFREMQTSNIRRDEFTTVRIL--------TTFNNDIFVGI-------- 100
R+ +++ + + D F ++ + + +F I
Sbjct: 124 SARLLNQETGVSVHAHIIKTGHESDRFIQNSLIHMYAACGNSMWAQKVFDSIQQKNVVSW 183
Query: 101 -ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
+++D Y KCG++ AQ+ F M KD +W+++I G +G A+ +F +M A +
Sbjct: 184 NSMLDGYAKCGEMVMAQKAFESMSEKDVRSWSSLIDGYVKAGEYSEAMAIFEKMQSAGPK 243
Query: 160 LDEVTYVGVLSACTH 174
+EVT V V AC H
Sbjct: 244 ANEVTMVSVSCACAH 258
Score = 37.0 bits (84), Expect = 3.3, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 110 GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
GD+ + RVF ++ F+W +I G + S + +L +F +MLR + D +TY
Sbjct: 62 GDINYSYRVFSQLSSPTIFSWNTIIRGYSNSKNPIQSLSIFLKMLRLGVAPDYLTY 117
>gi|125582503|gb|EAZ23434.1| hypothetical protein OsJ_07125 [Oryza sativa Japonica Group]
Length = 596
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 63/194 (32%), Positives = 97/194 (50%), Gaps = 28/194 (14%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M +D +SWT++++GY +D A Q F MP +D + WTA+I G+ + A
Sbjct: 227 VFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIA 286
Query: 67 LTLFREMQTSNIRRDEFTTVRILTT--------------------------FNNDIFVGI 100
L LF M + F V L FN +F+
Sbjct: 287 LELFERMTGEGVVPTPFALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFN--VFIHN 344
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
ALIDMY KCGD+ A VF +ML +D +W +M+ G + +G G +L +F +ML+ ++
Sbjct: 345 ALIDMYSKCGDMVAAMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQP 404
Query: 161 DEVTYVGVLSACTH 174
VT++ VL+AC+H
Sbjct: 405 TYVTFLAVLTACSH 418
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 30/180 (16%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYIN-RGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRV 60
+L F ++ +K+ S+ ++++ RG + A + MP R+ V + +I R
Sbjct: 83 SLAAFDDLPHKNAHSYNSLLAALARGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARH 142
Query: 61 NRFREALTLF------REMQTSNIRRDEFTTVR---------------------ILTTFN 93
R EAL +F R + + D FT V +++
Sbjct: 143 GRESEALRVFAQLARDRGLGQQQVAIDRFTVVSAASACAGLRDARHLRELHGAVVVSGME 202
Query: 94 NDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+ + A++D Y K G VE A+ VF +M +D +WT+MI G + D A+ +F M
Sbjct: 203 VTVIMANAMVDAYSKAGRVEDARGVFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMM 262
>gi|356530245|ref|XP_003533693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Glycine max]
Length = 581
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 111/195 (56%), Gaps = 24/195 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
AL++F M +D+ SW T+++G+I G+++ A + F +M E++ + WTAM+ GY++
Sbjct: 207 ALQLFQRMPERDMPSWNTMITGFIQNGELNRAEKLFGEMQEKNVITWTAMMTGYVQHGLS 266
Query: 64 REALTLFREMQTSN-IRRDEFTTVRIL---------------------TTFNNDIFVGIA 101
EAL +F +M +N ++ + T V +L T F + V A
Sbjct: 267 EEALRVFIKMLATNELKPNTGTFVTVLGACSDLAGLTEGQQIHQMISKTVFQDSTCVVSA 326
Query: 102 LIDMYCKCGDVEKAQRVFWKML--RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
LI+MY KCG++ A+++F L ++D +W MI A G+G A+++F++M +
Sbjct: 327 LINMYSKCGELHTARKMFDDGLLSQRDLISWNGMIAAYAHHGYGKEAINLFNEMQELGVC 386
Query: 160 LDEVTYVGVLSACTH 174
++VT+VG+L+AC+H
Sbjct: 387 ANDVTFVGLLTACSH 401
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 96/171 (56%), Gaps = 19/171 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F MK++DV+SWTT+V+G G+V+ AR F QMP R+ V W AMI GY + R
Sbjct: 145 AQRLFDQMKDRDVVSWTTMVAGLAKNGRVEDARALFDQMPVRNVVSWNAMITGYAQNRRL 204
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
EAL LF+ M R + ++N +I + + G++ +A+++F +M
Sbjct: 205 DEALQLFQRMPE-----------RDMPSWN-------TMITGFIQNGELNRAEKLFGEMQ 246
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS-IRLDEVTYVGVLSACT 173
K+ TWTAM+ G G + AL +F +ML + ++ + T+V VL AC+
Sbjct: 247 EKNVITWTAMMTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVTVLGACS 297
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 76/140 (54%), Gaps = 18/140 (12%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
K+V++WT +V+GYI QV A + F +MP R+ V W M+DGY R ++AL LFR M
Sbjct: 62 KNVVTWTAMVNGYIKFNQVKEAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRRM 121
Query: 74 QTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
N+ ++N +I +CG +E AQR+F +M +D +WT M
Sbjct: 122 PERNV-----------VSWN-------TIITALVQCGRIEDAQRLFDQMKDRDVVSWTTM 163
Query: 134 IVGLAISGHGDTALDMFSQM 153
+ GLA +G + A +F QM
Sbjct: 164 VAGLAKNGRVEDARALFDQM 183
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 17/136 (12%)
Query: 23 VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDE 82
+S G++D AR+ F +MPERD LWT MI GYL+ REA LF D
Sbjct: 8 ISRLCREGEIDYARKVFEEMPERDIGLWTTMITGYLKCGMIREARKLF----------DR 57
Query: 83 FTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGH 142
+ + + T+ A+++ Y K V++A+R+F++M ++ +W M+ G A +G
Sbjct: 58 WDAKKNVVTWT-------AMVNGYIKFNQVKEAERLFYEMPLRNVVSWNTMVDGYARNGL 110
Query: 143 GDTALDMFSQMLRASI 158
ALD+F +M ++
Sbjct: 111 TQQALDLFRRMPERNV 126
>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
Length = 695
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 98/186 (52%), Gaps = 27/186 (14%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV ++ Y + G +D+AR+ F +MPER V W +MID +R + AL LFREMQ
Sbjct: 242 DVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQ 301
Query: 75 TSNIRRDEFTTVRILTTFNN------------------------DIFVGIALIDMYCKCG 110
S D +T +L+ D+ V +LI+MYCKCG
Sbjct: 302 RS-FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCG 360
Query: 111 DVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML--RASIRLDEVTYVGV 168
+ A++VF M ++D +W AMI+G A G + A++ F +M+ R ++R + VT+VG+
Sbjct: 361 SLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGL 420
Query: 169 LSACTH 174
L AC H
Sbjct: 421 LIACNH 426
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 24/165 (14%)
Query: 32 VDIARQYFAQMPERDYVLWTAMIDGYLR-VNRFREALTLFREM-QTSNIRRDEFTTVRIL 89
V+ A + F + +W +I V+R EA L+R+M + D+ T +L
Sbjct: 156 VNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVL 215
Query: 90 TT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
F D++V LI +Y CG ++ A++VF +M +
Sbjct: 216 KACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLV 275
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+W +MI L G D+AL +F +M R S D T VLSAC
Sbjct: 276 SWNSMIDALVRFGEYDSALQLFREMQR-SFEPDGYTMQSVLSACA 319
>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
Length = 755
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 68/196 (34%), Positives = 98/196 (50%), Gaps = 21/196 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A E+F M ++V SW T+++GY G ++ A+ F MP++D V W AM+ Y +
Sbjct: 302 MDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQG 361
Query: 61 NRFREALTLFREMQTSN--IRRDEFTTVR-------------------ILTTFNNDIFVG 99
E L LF EM + R F V I + FVG
Sbjct: 362 GCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVG 421
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+ MY KCG++E A+ F +M +D +W MI G A G G AL++F M S +
Sbjct: 422 NALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTK 481
Query: 160 LDEVTYVGVLSACTHN 175
D++T VGVL+AC+H+
Sbjct: 482 PDDITLVGVLAACSHS 497
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 57/187 (30%), Positives = 87/187 (46%), Gaps = 17/187 (9%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A E+F M +DV+SW +VSGY RG + AR+ F P RD WTA++ GY +
Sbjct: 209 MSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQN 268
Query: 61 NRFREALTLFREMQTSN-----------IRRDEFTTVRILTTFN----NDIFVGIALIDM 105
EA +F M N I+R + L FN ++ ++
Sbjct: 269 GMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKEL--FNMMPCRNVASWNTMLTG 326
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y + G +E+A+ VF M +KD +W AM+ + G + L +F +M R ++ +
Sbjct: 327 YAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAF 386
Query: 166 VGVLSAC 172
VLS C
Sbjct: 387 ACVLSTC 393
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 46/147 (31%), Positives = 71/147 (48%), Gaps = 18/147 (12%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F + D ISW ++SGY+ G++ AR+ F +MP RD V W M+ GY R EA
Sbjct: 184 LFNSRTEWDAISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEA 243
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKD 126
LF + VR D+F A++ Y + G +E+A+RVF M ++
Sbjct: 244 RRLF-----------DAAPVR-------DVFTWTAVVSGYAQNGMLEEARRVFDAMPERN 285
Query: 127 KFTWTAMIVGLAISGHGDTALDMFSQM 153
+W AM+ D A ++F+ M
Sbjct: 286 AVSWNAMVAAYIQRRMMDEAKELFNMM 312
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 13/160 (8%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M +D +++ ++S + N G V +AR YF PE+D V W M+ Y+R R EA
Sbjct: 122 LFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEA 181
Query: 67 LTLFRE-----------MQTSNIRRDEFTTVRIL--TTFNNDIFVGIALIDMYCKCGDVE 113
LF + + ++ + + R L D+ ++ Y + GD+
Sbjct: 182 RGLFNSRTEWDAISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMV 241
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+A+R+F +D FTWTA++ G A +G + A +F M
Sbjct: 242 EARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAM 281
Score = 42.4 bits (98), Expect = 0.079, Method: Composition-based stats.
Identities = 40/183 (21%), Positives = 70/183 (38%), Gaps = 44/183 (24%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM- 73
+VI ++ ++ G+V A + FA MP R + AM+ GY R A +LFR +
Sbjct: 37 EVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIP 96
Query: 74 ------------------QTSNIR--------RDEFTTVRILTTFNNDIFVGIA------ 101
++ R RD T ++++ N V +A
Sbjct: 97 RPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDL 156
Query: 102 -----------LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMF 150
++ Y + G VE+A+ +F D +W A++ G G A ++F
Sbjct: 157 APEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSEARELF 216
Query: 151 SQM 153
+M
Sbjct: 217 DRM 219
>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
Length = 615
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 98/186 (52%), Gaps = 27/186 (14%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV ++ Y + G +D+AR+ F +MPER V W +MID +R + AL LFREMQ
Sbjct: 162 DVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQ 221
Query: 75 TSNIRRDEFTTVRILTTFNN------------------------DIFVGIALIDMYCKCG 110
S D +T +L+ D+ V +LI+MYCKCG
Sbjct: 222 RS-FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCG 280
Query: 111 DVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML--RASIRLDEVTYVGV 168
+ A++VF M ++D +W AMI+G A G + A++ F +M+ R ++R + VT+VG+
Sbjct: 281 SLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGL 340
Query: 169 LSACTH 174
L AC H
Sbjct: 341 LIACNH 346
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 24/165 (14%)
Query: 32 VDIARQYFAQMPERDYVLWTAMIDGYLR-VNRFREALTLFREM-QTSNIRRDEFTTVRIL 89
V+ A + F + +W +I V+R EA L+R+M + D+ T +L
Sbjct: 76 VNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVL 135
Query: 90 TT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
F D++V LI +Y CG ++ A++VF +M +
Sbjct: 136 KACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLV 195
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+W +MI L G D+AL +F +M R S D T VLSAC
Sbjct: 196 SWNSMIDALVRFGEYDSALQLFREMQR-SFEPDGYTMQSVLSACA 239
>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 755
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 68/196 (34%), Positives = 98/196 (50%), Gaps = 21/196 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A E+F M ++V SW T+++GY G ++ A+ F MP++D V W AM+ Y +
Sbjct: 302 MDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQG 361
Query: 61 NRFREALTLFREMQTSN--IRRDEFTTVR-------------------ILTTFNNDIFVG 99
E L LF EM + R F V I + FVG
Sbjct: 362 GCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVG 421
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+ MY KCG++E A+ F +M +D +W MI G A G G AL++F M S +
Sbjct: 422 NALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTK 481
Query: 160 LDEVTYVGVLSACTHN 175
D++T VGVL+AC+H+
Sbjct: 482 PDDITLVGVLAACSHS 497
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 57/187 (30%), Positives = 87/187 (46%), Gaps = 17/187 (9%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A E+F M +DV+SW +VSGY RG + AR+ F P RD WTA++ GY +
Sbjct: 209 MSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQN 268
Query: 61 NRFREALTLFREMQTSN-----------IRRDEFTTVRILTTFN----NDIFVGIALIDM 105
EA +F M N I+R + L FN ++ ++
Sbjct: 269 GMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKEL--FNMMPCRNVASWNTMLTG 326
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y + G +E+A+ VF M +KD +W AM+ + G + L +F +M R ++ +
Sbjct: 327 YAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAF 386
Query: 166 VGVLSAC 172
VLS C
Sbjct: 387 ACVLSTC 393
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 18/147 (12%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F + DVISW ++SGY+ G++ AR+ F +MP RD V W M+ GY R EA
Sbjct: 184 LFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEA 243
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKD 126
LF + VR D+F A++ Y + G +E+A+RVF M ++
Sbjct: 244 RRLF-----------DAAPVR-------DVFTWTAVVSGYAQNGMLEEARRVFDAMPERN 285
Query: 127 KFTWTAMIVGLAISGHGDTALDMFSQM 153
+W AM+ D A ++F+ M
Sbjct: 286 AVSWNAMVAAYIQRRMMDEAKELFNMM 312
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 13/160 (8%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M +D +++ ++S + N G V +AR YF PE+D V W M+ Y+R R EA
Sbjct: 122 LFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEA 181
Query: 67 LTLFRE-----------MQTSNIRRDEFTTVRIL--TTFNNDIFVGIALIDMYCKCGDVE 113
LF + + ++ + + R L D+ ++ Y + GD+
Sbjct: 182 RGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMV 241
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+A+R+F +D FTWTA++ G A +G + A +F M
Sbjct: 242 EARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAM 281
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 40/183 (21%), Positives = 70/183 (38%), Gaps = 44/183 (24%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM- 73
+VI ++ ++ G+V A + FA MP R + AM+ GY R A +LFR +
Sbjct: 37 EVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIP 96
Query: 74 ------------------QTSNIR--------RDEFTTVRILTTFNNDIFVGIA------ 101
++ R RD T ++++ N V +A
Sbjct: 97 RPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDL 156
Query: 102 -----------LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMF 150
++ Y + G VE+A+ +F D +W A++ G G A ++F
Sbjct: 157 APEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELF 216
Query: 151 SQM 153
+M
Sbjct: 217 DRM 219
>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
Length = 739
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 68/196 (34%), Positives = 98/196 (50%), Gaps = 21/196 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A E+F M ++V SW T+++GY G ++ A+ F MP++D V W AM+ Y +
Sbjct: 302 MDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQG 361
Query: 61 NRFREALTLFREMQTSN--IRRDEFTTVR-------------------ILTTFNNDIFVG 99
E L LF EM + R F V I + FVG
Sbjct: 362 GCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVG 421
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+ MY KCG++E A+ F +M +D +W MI G A G G AL++F M S +
Sbjct: 422 NALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTK 481
Query: 160 LDEVTYVGVLSACTHN 175
D++T VGVL+AC+H+
Sbjct: 482 PDDITLVGVLAACSHS 497
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 57/187 (30%), Positives = 87/187 (46%), Gaps = 17/187 (9%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A E+F M +DV+SW +VSGY RG + AR+ F P RD WTA++ GY +
Sbjct: 209 MSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQN 268
Query: 61 NRFREALTLFREMQTSN-----------IRRDEFTTVRILTTFN----NDIFVGIALIDM 105
EA +F M N I+R + L FN ++ ++
Sbjct: 269 GMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKEL--FNMMPCRNVASWNTMLTG 326
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y + G +E+A+ VF M +KD +W AM+ + G + L +F +M R ++ +
Sbjct: 327 YAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAF 386
Query: 166 VGVLSAC 172
VLS C
Sbjct: 387 ACVLSTC 393
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 18/147 (12%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F + DVISW ++SGY+ G++ AR+ F +MP RD V W M+ GY R EA
Sbjct: 184 LFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEA 243
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKD 126
LF + VR D+F A++ Y + G +E+A+RVF M ++
Sbjct: 244 RRLF-----------DAAPVR-------DVFTWTAVVSGYAQNGMLEEARRVFDAMPERN 285
Query: 127 KFTWTAMIVGLAISGHGDTALDMFSQM 153
+W AM+ D A ++F+ M
Sbjct: 286 AVSWNAMVAAYIQRRMMDEAKELFNMM 312
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 13/160 (8%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M +D +++ ++S + N G V +AR YF PE+D V W M+ Y+R R EA
Sbjct: 122 LFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEA 181
Query: 67 LTLFRE-----------MQTSNIRRDEFTTVRIL--TTFNNDIFVGIALIDMYCKCGDVE 113
LF + + ++ + + R L D+ ++ Y + GD+
Sbjct: 182 RGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMV 241
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+A+R+F +D FTWTA++ G A +G + A +F M
Sbjct: 242 EARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAM 281
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 40/183 (21%), Positives = 70/183 (38%), Gaps = 44/183 (24%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM- 73
+VI ++ ++ G+V A + FA MP R + AM+ GY R A +LFR +
Sbjct: 37 EVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIP 96
Query: 74 ------------------QTSNIR--------RDEFTTVRILTTFNNDIFVGIA------ 101
++ R RD T ++++ N V +A
Sbjct: 97 RPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDL 156
Query: 102 -----------LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMF 150
++ Y + G VE+A+ +F D +W A++ G G A ++F
Sbjct: 157 APEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELF 216
Query: 151 SQM 153
+M
Sbjct: 217 DRM 219
>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
Length = 688
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 63/196 (32%), Positives = 101/196 (51%), Gaps = 27/196 (13%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
IF +M ++ V+S T+I++GY V+ A+ F+QM E++ + W +I Y + EA
Sbjct: 310 IFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEA 369
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNN---------------------------DIFVG 99
+ LF +++ +I +T +L N D+FVG
Sbjct: 370 IRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVG 429
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
+L+DMY K G ++ +VF +M +D +W AMIVG A +G AL +F +ML ++
Sbjct: 430 NSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNEN 489
Query: 160 LDEVTYVGVLSACTHN 175
D VT +GVLSAC H+
Sbjct: 490 PDSVTMIGVLSACGHS 505
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 59/211 (27%), Positives = 85/211 (40%), Gaps = 53/211 (25%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV T +V Y + AR+ F MPER+ V W ++I Y + EAL LF EM
Sbjct: 185 DVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMM 244
Query: 75 TSNIRRDEFTTVRILTT----------------------FNNDIFVGIALIDMYCKCG-- 110
+ DE T +++ +D+ + AL+DMY KCG
Sbjct: 245 ATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRT 304
Query: 111 -----------------------------DVEKAQRVFWKMLRKDKFTWTAMIVGLAISG 141
+VE AQ VF +M+ K+ W +I A +G
Sbjct: 305 WEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNG 364
Query: 142 HGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+ A+ +F Q+ R SI TY VL+AC
Sbjct: 365 EEEEAIRLFVQLKRDSIWPTHYTYGNVLNAC 395
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 23/192 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F + ++ S+ ++S Y G+ D AR F +P+ D + A++ R R
Sbjct: 71 ARRVFDGIPLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRG 130
Query: 64 R--EALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGI 100
+AL M + + ++ L+ +D+ +G
Sbjct: 131 HAGDALRFLAAMHADDFVLNAYSFASALSACAAEKDLRTGEQVHGLVARSPHADDVHIGT 190
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
AL+DMY KC A+RVF M ++ +W ++I +G AL +F +M+
Sbjct: 191 ALVDMYAKCERPVDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFP 250
Query: 161 DEVTYVGVLSAC 172
DEVT V+SAC
Sbjct: 251 DEVTLSSVMSAC 262
Score = 40.0 bits (92), Expect = 0.37, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 20/126 (15%)
Query: 49 LWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCK 108
L ++ Y R+ R REA R F + + TF+ + AL+ Y +
Sbjct: 54 LLNTLVSTYARLGRLREA-------------RRVFDGIPLRNTFSYN-----ALLSAYAR 95
Query: 109 CGDVEKAQRVFWKMLRKDKFTWTAMIVGLAI--SGHGDTALDMFSQMLRASIRLDEVTYV 166
G ++A+ +F + D+ ++ A++ LA GH AL + M L+ ++
Sbjct: 96 LGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFA 155
Query: 167 GVLSAC 172
LSAC
Sbjct: 156 SALSAC 161
>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
Length = 515
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 88/170 (51%), Gaps = 21/170 (12%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT 85
Y+ G+++ AR F +M RD V W AM+ GY REAL LF MQ + D +T
Sbjct: 87 YVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYASNGHPREALDLFFAMQMEGAKPDCYTV 146
Query: 86 VRILTTFN---------------------NDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124
V L+ + +G ALIDMY KCG +A VF +ML
Sbjct: 147 VGALSACTRLGALDLGRQAVGMVHWDEVLGNPVLGTALIDMYAKCGSTSEAWMVFQQMLE 206
Query: 125 KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+D W AMI+GL ++GH A + QM ++ ++L++ T++G+L +CTH
Sbjct: 207 RDIIVWNAMILGLGMTGHEKIAFALVGQMKKSGVKLNDNTFIGLLCSCTH 256
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 74/154 (48%), Gaps = 22/154 (14%)
Query: 42 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT---------- 91
MP V WTA+I Y+ EA+ + R S +R D FT VR+LT
Sbjct: 1 MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETG 60
Query: 92 ------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAI 139
+FV A +D+Y KCG++EKA+ VF +M +D W AM+ G A
Sbjct: 61 EAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYAS 120
Query: 140 SGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+GH ALD+F M + D T VG LSACT
Sbjct: 121 NGHPREALDLFFAMQMEGAKPDCYTVVGALSACT 154
>gi|326522570|dbj|BAK07747.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 623
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 61/177 (34%), Positives = 99/177 (55%), Gaps = 22/177 (12%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+ +V Y G++ AR+ F + +D V W A+I GY + +EA++LF M+ + R
Sbjct: 272 SALVGMYEKCGEMAEARRVFDAIAHKDNVAWNALITGYAQNGMSKEAISLFHSMRQAGAR 331
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
D+ T V +L+ F ++++VG AL+DMY KCGD+ +A +V
Sbjct: 332 PDKITLVGVLSACAAVGALELGTELDRYALQRGFYSNVYVGTALVDMYSKCGDLTRAIQV 391
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS-IRLDEVTYVGVLSACTH 174
F K+ K++ +W A+I GLA +G G A+ F M + +R D++T++GVLSAC H
Sbjct: 392 FEKLPCKNEASWNALICGLAFNGRGQEAIRQFELMRKQEGLRPDDITFIGVLSACVH 448
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 57/174 (32%), Positives = 82/174 (47%), Gaps = 22/174 (12%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR- 79
++V+ Y N G+ AR+ F + RD V W +MI Y +A +FR M
Sbjct: 171 SLVTMYSNLGRPRAARRVFDGILRRDVVSWNSMIKAYQAAGMKDDAARMFRAMVAEGAVP 230
Query: 80 -------------RD--EFTTVRILTTFNNDI------FVGIALIDMYCKCGDVEKAQRV 118
RD + R L + + VG AL+ MY KCG++ +A+RV
Sbjct: 231 PNAVTVAVVLAACRDAGDLALGRWLEEWVKSVGMEVGSLVGSALVGMYEKCGEMAEARRV 290
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
F + KD W A+I G A +G A+ +F M +A R D++T VGVLSAC
Sbjct: 291 FDAIAHKDNVAWNALITGYAQNGMSKEAISLFHSMRQAGARPDKITLVGVLSAC 344
>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
Length = 803
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 98/182 (53%), Gaps = 22/182 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
+VIS+T ++ GY+ G AR+ F M RD + WTAMI GY + + EA+ LFR M
Sbjct: 363 NVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMI 422
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGI---------------------ALIDMYCKCGDVE 113
S + T +L+ + ++G A+I +Y + G V
Sbjct: 423 RSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYARSGSVP 482
Query: 114 KAQRVFWKML-RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
A+RVF ++ RK+ TWT+MIV LA G G+ A+ +F +MLR ++ D VTY+GV SAC
Sbjct: 483 LARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSAC 542
Query: 173 TH 174
TH
Sbjct: 543 TH 544
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 94/214 (43%), Gaps = 53/214 (24%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
++ +W +++S Y G++ AR FAQMPERD V WT M+ G R RF +A+ F +M
Sbjct: 95 RNAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDM 154
Query: 74 QTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDV 112
+ +F +L++ ++ + V +++ MY KCGD
Sbjct: 155 VGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDA 214
Query: 113 EKAQRVFWKMLRKDKFTWTAM-------------------------------IVGLAISG 141
E A+ VF +M + + +W AM I G +G
Sbjct: 215 ETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNG 274
Query: 142 HGDTALDMFSQMLRA-SIRLDEVTYVGVLSACTH 174
D AL FS+ML A S+ DE T VLSAC +
Sbjct: 275 LDDMALKFFSRMLTASSMEPDEFTVTSVLSACAN 308
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 92/225 (40%), Gaps = 55/225 (24%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F MK + SW +VS Y ++G++D+A F M ER V W A+I GY +
Sbjct: 217 ARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLD 276
Query: 64 REALTLFREMQT-SNIRRDEFTTVRILTTFNNDIFVGI---------------------A 101
AL F M T S++ DEFT +L+ N + + A
Sbjct: 277 DMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNA 336
Query: 102 LIDMYCKCGDVEKAQR---------------------------------VFWKMLRKDKF 128
LI Y K G VE A+R VF M +D
Sbjct: 337 LISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVI 396
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
WTAMIVG +G D A+++F M+R+ + T VLSAC
Sbjct: 397 AWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACA 441
Score = 42.0 bits (97), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 73/169 (43%), Gaps = 23/169 (13%)
Query: 10 NMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVNRFREALT 68
+++ + V I++ Y G V +AR+ F Q+ ++ V WT+MI + +A+
Sbjct: 459 SLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIV 518
Query: 69 LFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
LF EM ++ D T + + + + G ++K +R + +ML +
Sbjct: 519 LFEEMLRVGVKPDRVTYIGVFSACTH--------------AGFIDKGKRYYEQMLNEHGI 564
Query: 129 T-----WTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+ M+ LA +G A + +M + D V + +L+AC
Sbjct: 565 VPEMSHYACMVDLLARAGLLTEAHEFIQRM---PVAPDTVVWGSLLAAC 610
>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
Length = 613
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 104/197 (52%), Gaps = 23/197 (11%)
Query: 1 MGFALEIFGNMKNK-DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR 59
M A E F N K D + WT +VSGY++ G V A +YF MP R+ V W A++ GY++
Sbjct: 158 MSTAEEWFRNAPEKEDAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVK 217
Query: 60 VNRFREALTLFREM-QTSNIRRDEFTTVRILTTFNN---------------------DIF 97
+ +AL LFR M + +N++ + T +L +N ++
Sbjct: 218 NSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLT 277
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
VG +L+ MYCKCGD+ A +F +M +D W AMI G A G G A+++F +M
Sbjct: 278 VGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEG 337
Query: 158 IRLDEVTYVGVLSACTH 174
+ + +T+V VL+AC H
Sbjct: 338 VEPNWITFVVVLTACIH 354
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 22/118 (18%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T++VS Y G + A F +M RD V W AMI GY + +EA+ LF M+ +
Sbjct: 280 TSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVE 339
Query: 80 RDEFTTVRILTT--------FNNDIFVGI--------------ALIDMYCKCGDVEKA 115
+ T V +LT F F G+ ++D+ C+ G +E+A
Sbjct: 340 PNWITFVVVLTACIHTGLCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERA 397
>gi|224079119|ref|XP_002305756.1| predicted protein [Populus trichocarpa]
gi|222848720|gb|EEE86267.1| predicted protein [Populus trichocarpa]
Length = 530
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 114/196 (58%), Gaps = 22/196 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR- 59
+G+A ++F M K+VI T+++SGY+N+G V+ A + F + E+D V++ AMI+GY +
Sbjct: 198 VGYARKVFDLMLEKNVICSTSMISGYMNQGFVEDAEEIFWKTVEKDIVVFNAMIEGYSKS 257
Query: 60 VNRFREALTLFREMQTSNIRRD--EFTTVR-------------------ILTTFNNDIFV 98
V +AL ++ +MQ +R + F +V + + F N + +
Sbjct: 258 VETAMKALEVYVDMQRFGLRPNGSTFASVSGACSVLAGFEIGQQVQCQLMKSGFFNGVKM 317
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
G ALIDMY KCG +E A+RVF M ++ F+WT+MI G +G AL++F +M + +I
Sbjct: 318 GSALIDMYSKCGRIEDARRVFNYMPVRNVFSWTSMIDGYGKNGEPWEALELFHRMQQCNI 377
Query: 159 RLDEVTYVGVLSACTH 174
+ VT++G LSAC H
Sbjct: 378 EPNYVTFLGALSACGH 393
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 73/196 (37%), Gaps = 57/196 (29%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN 94
A Q F ++P+R + MI GYLR F E++++ R + R D FT IL +
Sbjct: 96 AHQLFDELPQRTLSAYNYMIGGYLRQGLFEESISMVRRLDLDGERPDGFTFSMILKASTS 155
Query: 95 -------------------------DIFVGIALIDMYCKCGD------------------ 111
D + AL+D Y K G
Sbjct: 156 GANVMLPRNTGGLVHAQILKLDVKADDVLYTALVDSYVKSGKVGYARKVFDLMLEKNVIC 215
Query: 112 -------------VEKAQRVFWKMLRKDKFTWTAMIVGLAISGH-GDTALDMFSQMLRAS 157
VE A+ +FWK + KD + AMI G + S AL+++ M R
Sbjct: 216 STSMISGYMNQGFVEDAEEIFWKTVEKDIVVFNAMIEGYSKSVETAMKALEVYVDMQRFG 275
Query: 158 IRLDEVTYVGVLSACT 173
+R + T+ V AC+
Sbjct: 276 LRPNGSTFASVSGACS 291
>gi|115446683|ref|NP_001047121.1| Os02g0555100 [Oryza sativa Japonica Group]
gi|113536652|dbj|BAF09035.1| Os02g0555100 [Oryza sativa Japonica Group]
Length = 596
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 63/194 (32%), Positives = 97/194 (50%), Gaps = 28/194 (14%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M +D +SWT++++GY +D A Q F MP +D + WTA+I G+ + A
Sbjct: 227 VFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIA 286
Query: 67 LTLFREMQTSNIRRDEFTTVRILTT--------------------------FNNDIFVGI 100
L LF M + F V L FN +F+
Sbjct: 287 LELFERMTGEGVVPTPFALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFN--VFIHN 344
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
ALIDMY KCGD+ A VF +ML +D +W +M+ G + +G G +L +F +ML+ ++
Sbjct: 345 ALIDMYSKCGDMVAAMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQP 404
Query: 161 DEVTYVGVLSACTH 174
VT++ VL+AC+H
Sbjct: 405 TYVTFLAVLTACSH 418
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 30/180 (16%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYIN-RGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRV 60
+L F ++ +K+ S+ ++++ RG + A + MP R+ V + +I R
Sbjct: 83 SLAAFDDLPHKNAHSYNSLLAALARGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARH 142
Query: 61 NRFREALTLF------REMQTSNIRRDEFTTVR---------------------ILTTFN 93
R EAL +F R + + D FT V +++
Sbjct: 143 GRESEALRVFAQLARDRGLGQQQVAIDRFTVVSAASACAGLRDARHLRELHGAVVVSGME 202
Query: 94 NDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+ + A++D Y K G VE A+ VF +M +D +WT+MI G + D A+ +F M
Sbjct: 203 VTVIMANAMVDAYSKAGRVEDARGVFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMM 262
>gi|302820595|ref|XP_002991964.1| hypothetical protein SELMODRAFT_23654 [Selaginella moellendorffii]
gi|300140206|gb|EFJ06932.1| hypothetical protein SELMODRAFT_23654 [Selaginella moellendorffii]
Length = 353
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 99/194 (51%), Gaps = 23/194 (11%)
Query: 4 ALEIFGNMK-NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
ALE+F +M+ K+V+SWT IV+ ++D AR F +MP R+ V W A+I GYL +R
Sbjct: 61 ALEVFQSMRCRKNVVSWTAIVAALAQNKRLDQARDLFDRMPIRNVVSWNAIITGYLDDDR 120
Query: 63 FREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIA 101
+A+ L+ M+ + D T V +L DI VG A
Sbjct: 121 PPDAIDLYYRMRQEGVPADRVTFVAMLEAAASITNLVLGRVIHSHTQEEGIEGDILVGTA 180
Query: 102 LIDMYCKCGDVEKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
L+ MY +CG E A R F M R D W+A+I + G+G AL++F ML I
Sbjct: 181 LLSMYGRCGCTEMAVRTFHGMPPRHDVVVWSALIASFSHCGNGGKALEVFHGMLLDGILP 240
Query: 161 DEVTYVGVLSACTH 174
+ VT V VLSAC+H
Sbjct: 241 NGVTLVSVLSACSH 254
>gi|297746380|emb|CBI16436.3| unnamed protein product [Vitis vinifera]
Length = 545
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 100/168 (59%), Gaps = 8/168 (4%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
++D+ SW ++ GY+ G++ A++ F +M ERD V WT +I GY++V F+EAL LF E
Sbjct: 153 DQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHE 212
Query: 73 M-QTSNIRRDEFTTVRILTT---FNNDIFVGIALIDMYCKCGDVEKAQRVFWKM--LRKD 126
M QT + + + V I + N + +L+DMY KCG+++ A +VF L+
Sbjct: 213 MLQTVALDQGRWIHVYIDKSEIKMNERLLA--SLLDMYAKCGEIDFAAKVFHDEYGLKLK 270
Query: 127 KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+ W AMI G A+ G A+D+F QM + ++VT+V +L+AC+H
Sbjct: 271 VWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSH 318
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 64/150 (42%), Gaps = 29/150 (19%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRV-----NRFREALTLFREMQTSNIRRDEFT 84
G + A Q F Q+P+ D ++ MI + + N R L++ R S + +T
Sbjct: 36 GSLSYAHQLFDQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVR---VSGFLPNRYT 92
Query: 85 TVRILTTFNN---------------------DIFVGIALIDMYCKCGDVEKAQRVFWKML 123
V + N ++FV A+I MY G V++A+RVF L
Sbjct: 93 FVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSL 152
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+D ++W MI G SG A +MF +M
Sbjct: 153 DQDLYSWNIMIGGYVGSGEIGRAKEMFDEM 182
>gi|115461705|ref|NP_001054452.1| Os05g0112900 [Oryza sativa Japonica Group]
gi|45680436|gb|AAS75237.1| unknown protein [Oryza sativa Japonica Group]
gi|113578003|dbj|BAF16366.1| Os05g0112900 [Oryza sativa Japonica Group]
gi|215715346|dbj|BAG95097.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215736909|dbj|BAG95838.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222629956|gb|EEE62088.1| hypothetical protein OsJ_16872 [Oryza sativa Japonica Group]
Length = 661
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 92/189 (48%), Gaps = 18/189 (9%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E F M KD+ +W ++++ Y N GQV+ A++ F MP ++ V W +IDGY N
Sbjct: 297 AREFFDRMPKKDIPAWNSMITAYTNDGQVNDAQRLFDIMPSKNLVTWNIIIDGYSMNNLK 356
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT------------------FNNDIFVGIALIDM 105
EAL LF M S + D T + +L + + +G L+ M
Sbjct: 357 DEALRLFLLMLRSAVSPDSTTLISVLVVSESTMEVRQIHGLSTKLGYQPETNLGNTLVSM 416
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y + GD+ A F ++ KD TWT+MI LA G AL F+QMLR + T+
Sbjct: 417 YSRSGDLSSAWLAFRRLNEKDAITWTSMIQALANHGCAPCALQGFAQMLRCGYKPSSTTF 476
Query: 166 VGVLSACTH 174
VLSAC H
Sbjct: 477 TAVLSACNH 485
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 15/180 (8%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F M ++V++WT +V Y++ G + A + F +MP+ + W AM G + +
Sbjct: 204 AREMFDKMPERNVVAWTVMVKAYVDNGCIQEALELFNRMPQMNSYSWNAMATGLMSAGKV 263
Query: 64 REALTLFREMQTSNI----------RRDEFTTVRILTTFN----NDIFVGIALIDMYCKC 109
+A+ LF +M N+ ++ F + R F+ DI ++I Y
Sbjct: 264 DDAVQLFDKMPHKNVVSWTIMVTGLAQNGFVS-RAREFFDRMPKKDIPAWNSMITAYTND 322
Query: 110 GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVL 169
G V AQR+F M K+ TW +I G +++ D AL +F MLR+++ D T + VL
Sbjct: 323 GQVNDAQRLFDIMPSKNLVTWNIIIDGYSMNNLKDEALRLFLLMLRSAVSPDSTTLISVL 382
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 18/155 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M K+V++WT +VSGY G VD AR+ F MP R+ WT M+ GY
Sbjct: 142 ARRLFDGMAVKNVVAWTCMVSGYCRAGLVDEARRLFDLMPYRNVFSWTTMVQGYAHNGML 201
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
REA +F +M N + ++ Y G +++A +F +M
Sbjct: 202 REAREMFDKMPERN------------------VVAWTVMVKAYVDNGCIQEALELFNRMP 243
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
+ + ++W AM GL +G D A+ +F +M ++
Sbjct: 244 QMNSYSWNAMATGLMSAGKVDDAVQLFDKMPHKNV 278
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 17/116 (14%)
Query: 39 FAQMPERD-YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIF 97
F MP RD V + AM+ +L A L+R + R TV
Sbjct: 81 FDGMPRRDDAVAYAAMVGIHLWDRDLPHAEALYRA-APPDCRGIHLDTV----------- 128
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
++D Y K G V++A+R+F M K+ WT M+ G +G D A +F M
Sbjct: 129 ----MLDGYVKAGQVDRARRLFDGMAVKNVVAWTCMVSGYCRAGLVDEARRLFDLM 180
>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
Length = 682
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 97/182 (53%), Gaps = 21/182 (11%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
++V T +V Y G ++ AR F M E++ V W++MI GY +EAL LF +M
Sbjct: 242 RNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKM 301
Query: 74 QTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDV 112
++ D + V +L + F ++ +G ALIDMY KCG +
Sbjct: 302 LNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRM 361
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
++A VF M +KD+ W A I GLA+SGH AL +F QM ++ I+ D T+VG+L AC
Sbjct: 362 DRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCAC 421
Query: 173 TH 174
TH
Sbjct: 422 TH 423
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 95/180 (52%), Gaps = 21/180 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D ++++ Y G +D A + F +P++++ WTA I GY+ V + REA+ +FR +
Sbjct: 142 DAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLL 201
Query: 75 TSNIRRDEFTTVRILTTFN---------------------NDIFVGIALIDMYCKCGDVE 113
+R D F+ V +L+ ++FV AL+D Y KCG++E
Sbjct: 202 EMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNME 261
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+A+ VF ML K+ +W++MI G A +G ALD+F +ML ++ D VGVL +C
Sbjct: 262 RARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCA 321
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 21/166 (12%)
Query: 28 NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFT--- 84
N G + + + Q E + L+ MI G + + F+E++ ++ M+ + D FT
Sbjct: 54 NFGNTNYSFRILDQTKEPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPF 113
Query: 85 ----TVRILTT--------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKD 126
R+L + D FV I+LI++Y KCG ++ A +VF + K+
Sbjct: 114 VLKACARVLDSELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKN 173
Query: 127 KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+WTA I G G A+DMF ++L +R D + V VLSAC
Sbjct: 174 FASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSAC 219
>gi|125550574|gb|EAY96283.1| hypothetical protein OsI_18181 [Oryza sativa Indica Group]
Length = 661
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 92/189 (48%), Gaps = 18/189 (9%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E F M KD+ +W ++++ Y N GQV+ A++ F MP ++ V W +IDGY N
Sbjct: 297 AREFFDRMPKKDIPAWNSMITAYTNDGQVNDAQRLFDIMPSKNLVTWNIIIDGYSMNNLK 356
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT------------------FNNDIFVGIALIDM 105
EAL LF M S + D T + +L + + +G L+ M
Sbjct: 357 DEALRLFLLMLRSAVSPDSTTLISVLVVSESTMEVRQIHGLSTKLGYQPETNLGNTLVSM 416
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y + GD+ A F ++ KD TWT+MI LA G AL F+QMLR + T+
Sbjct: 417 YSRSGDLSSAWLAFRRLNEKDAITWTSMIQALANHGCAPCALQGFAQMLRCGYKPSSTTF 476
Query: 166 VGVLSACTH 174
VLSAC H
Sbjct: 477 TAVLSACNH 485
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 15/180 (8%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F M ++V++WT +V Y++ G + A + F +MP+ + W AM G + +
Sbjct: 204 AREMFDKMPERNVVAWTVMVKAYVDNGCIQEALELFNRMPQMNSYSWNAMATGLMSAGKV 263
Query: 64 REALTLFREMQTSNI----------RRDEFTTVRILTTFN----NDIFVGIALIDMYCKC 109
+A+ LF +M N+ ++ F + R F+ DI ++I Y
Sbjct: 264 DDAVQLFDKMPHKNVVSWTIMVTGLAQNGFVS-RAREFFDRMPKKDIPAWNSMITAYTND 322
Query: 110 GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVL 169
G V AQR+F M K+ TW +I G +++ D AL +F MLR+++ D T + VL
Sbjct: 323 GQVNDAQRLFDIMPSKNLVTWNIIIDGYSMNNLKDEALRLFLLMLRSAVSPDSTTLISVL 382
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 18/155 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M K+V++WT +VSGY G VD AR+ F MP R+ WT M+ GY
Sbjct: 142 ARRLFDGMAVKNVVAWTCMVSGYCRAGLVDEARRLFDLMPYRNVFSWTTMVQGYAHNGML 201
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
REA +F +M N + ++ Y G +++A +F +M
Sbjct: 202 REAREMFDKMPERN------------------VVAWTVMVKAYVDNGCIQEALELFNRMP 243
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
+ + ++W AM GL +G D A+ +F +M ++
Sbjct: 244 QMNSYSWNAMATGLMSAGKVDDAVQLFDKMPHKNV 278
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 17/116 (14%)
Query: 39 FAQMPERD-YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIF 97
F MP RD V + AM+ +L A L+R + R TV
Sbjct: 81 FDGMPRRDDAVAYAAMVGIHLWDRDLPHAEALYRA-APPDCRGIHLDTV----------- 128
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
++D Y K G V++A+R+F M K+ WT M+ G +G D A +F M
Sbjct: 129 ----MLDGYVKAGQVDRARRLFDGMAVKNVVAWTCMVSGYCRAGLVDEARRLFDLM 180
>gi|255581953|ref|XP_002531775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528611|gb|EEF30631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 498
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 94/183 (51%), Gaps = 21/183 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
++ ++ +++SGY+++G VD AR F QM +D W+A+I G + EAL LF +
Sbjct: 150 EENTLAKNSMISGYLSKGHVDKARAMFDQMKAKDVASWSAIITGCTKNGMHTEALALFED 209
Query: 73 MQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGD 111
M S+ +E V +L+ + I + ALIDMY KCGD
Sbjct: 210 MMVSHTLPNESALVSLLSACAHLGALHQGRWIHAYIDRIGADMSIRLSTALIDMYAKCGD 269
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
++ + F KM R+D TW A+I G AI G ++F +ML I + V +V +LSA
Sbjct: 270 IQSGYKFFRKMPRRDIVTWGAIISGFAIYGQAKKCFELFEEMLADGIYPNGVIFVAILSA 329
Query: 172 CTH 174
C+H
Sbjct: 330 CSH 332
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 78/190 (41%), Gaps = 25/190 (13%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+ + N + ++ Y+ ++ AR F ++P D ++ MI G + R ++
Sbjct: 12 VVSGLLNHHSLCGRRLLESYVTMSEISYARSIFERIPYLDVFVYNTMIRGLMLGKRPYDS 71
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNND-------------IFVGIA--------LIDM 105
L LF E+ ++ D +T +L +N I GI+ LI M
Sbjct: 72 LLLFNELLLGCLKPDNYTYTFVLKACSNQKALPEGKQVHCQIIKAGISPNTHIHSSLIHM 131
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y G + +A+ V + ++ +MI G GH D A MF QM D ++
Sbjct: 132 YTSSGSIVEAECVLREFSEENTLAKNSMISGYLSKGHVDKARAMFDQMKAK----DVASW 187
Query: 166 VGVLSACTHN 175
+++ CT N
Sbjct: 188 SAIITGCTKN 197
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 67/162 (41%), Gaps = 23/162 (14%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T ++ Y G + ++F +MP RD V W A+I G+ + ++ LF EM I
Sbjct: 258 TALIDMYAKCGDIQSGYKFFRKMPRRDIVTWGAIISGFAIYGQAKKCFELFEEMLADGIY 317
Query: 80 RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML-----RKDKFTWTAMI 134
N IFV A++ G VE+ + F +M+ R + M+
Sbjct: 318 P------------NGVIFV--AILSACSHAGYVEEGKLYFNQMMVDLGIRPSIEHYGCMV 363
Query: 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC-THN 175
L +G A + M + + V + +LSAC THN
Sbjct: 364 DLLGRAGRLKEAEEFIISMPE---KPNSVIWGSMLSACRTHN 402
>gi|15228954|ref|NP_191214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180975|sp|Q9LXY5.1|PP284_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g56550
gi|7594533|emb|CAB88058.1| putative protein [Arabidopsis thaliana]
gi|91806586|gb|ABE66020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332646013|gb|AEE79534.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 581
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 64/195 (32%), Positives = 101/195 (51%), Gaps = 25/195 (12%)
Query: 5 LEIFGNMKNK----DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
LEI G++ D I T++V Y G V+IA + F +MP RD V W MI + V
Sbjct: 127 LEIHGSVIRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHV 186
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTF---------------------NNDIFVG 99
+AL++++ M + D +T V +L++ + +FV
Sbjct: 187 GLHNQALSMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCVFVS 246
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMY KCG +E A VF M ++D TW +MI+G + GHG A+ F +M+ + +R
Sbjct: 247 NALIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVR 306
Query: 160 LDEVTYVGVLSACTH 174
+ +T++G+L C+H
Sbjct: 307 PNAITFLGLLLGCSH 321
>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
Length = 688
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 62/196 (31%), Positives = 101/196 (51%), Gaps = 27/196 (13%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
IF +M ++ ++S T+I++GY V+ A+ F+QM E++ + W +I Y + EA
Sbjct: 310 IFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEA 369
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNN---------------------------DIFVG 99
+ LF +++ +I +T +L N D+FVG
Sbjct: 370 IRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVG 429
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
+L+DMY K G ++ +VF +M +D +W AMIVG A +G AL +F +ML ++
Sbjct: 430 NSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNEN 489
Query: 160 LDEVTYVGVLSACTHN 175
D VT +GVLSAC H+
Sbjct: 490 PDSVTMIGVLSACGHS 505
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 58/211 (27%), Positives = 86/211 (40%), Gaps = 53/211 (25%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV + +V Y + + AR+ F MPER+ V W ++I Y + EAL LF EM
Sbjct: 185 DVHIRSALVDMYAKCERPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMM 244
Query: 75 TSNIRRDEFTTVRILTT----------------------FNNDIFVGIALIDMYCKCG-- 110
+ DE T +++ +D+ + AL+DMY KCG
Sbjct: 245 AAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRT 304
Query: 111 -----------------------------DVEKAQRVFWKMLRKDKFTWTAMIVGLAISG 141
+VE AQ VF +M+ K+ W +I A +G
Sbjct: 305 WEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNG 364
Query: 142 HGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+ A+ +F Q+ R SI TY VL+AC
Sbjct: 365 EEEEAIRLFVQLKRDSIWPTHYTYGNVLNAC 395
Score = 72.4 bits (176), Expect = 7e-11, Method: Composition-based stats.
Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 23/192 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F + ++ S+ ++S Y G+ D AR F +P+ D + A++ R R
Sbjct: 71 ARRVFDEIPLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRG 130
Query: 64 R--EALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGI 100
+AL M + + ++ L+ +D+ +
Sbjct: 131 HAADALRFLAAMHADDFVLNAYSFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRS 190
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
AL+DMY KC E A+RVF M ++ +W ++I +G AL +F +M+ A
Sbjct: 191 ALVDMYAKCERPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSP 250
Query: 161 DEVTYVGVLSAC 172
DEVT V+SAC
Sbjct: 251 DEVTLSSVMSAC 262
Score = 40.8 bits (94), Expect = 0.21, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 20/126 (15%)
Query: 49 LWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCK 108
L ++ Y R+ R R+A +F E+ N TF+ + AL+ Y +
Sbjct: 54 LLNTLVSTYARLGRLRDARRVFDEIPLRN-------------TFSYN-----ALLSAYAR 95
Query: 109 CGDVEKAQRVFWKMLRKDKFTWTAMIVGLAI--SGHGDTALDMFSQMLRASIRLDEVTYV 166
G ++A+ +F + D+ ++ A++ LA GH AL + M L+ ++
Sbjct: 96 LGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFA 155
Query: 167 GVLSAC 172
LSAC
Sbjct: 156 SALSAC 161
>gi|224116552|ref|XP_002331925.1| predicted protein [Populus trichocarpa]
gi|222874597|gb|EEF11728.1| predicted protein [Populus trichocarpa]
Length = 530
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 64/191 (33%), Positives = 105/191 (54%), Gaps = 22/191 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M KDV SWT++++G++ ++ AR+ F +MP R+ V WTAMI GY+R
Sbjct: 159 VFKQMGIKDVSSWTSLLNGFVMCNGLESARRVFDEMPWRNDVAWTAMITGYVRGGMPIRG 218
Query: 67 LTLFREMQTSNIRRDE-FTTVRILT---------------------TFNNDIFVGIALID 104
L +FR+M+ + T V +L+ + + V AL+D
Sbjct: 219 LEMFRQMKAEGENQPTVITAVAVLSGCADLGAHDHGQAVHGYISKVNLDKGVTVSNALMD 278
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVT 164
MY K G VE A ++F ++++KD F+WT MI + G G+ AL++F ML + + ++VT
Sbjct: 279 MYSKGGCVESAMKIFDRLVKKDVFSWTTMISAHSSHGKGNHALEVFYDMLESGVIPNDVT 338
Query: 165 YVGVLSACTHN 175
++ VLS C+H+
Sbjct: 339 FLLVLSGCSHS 349
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 21/153 (13%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
+V+ Y G A++ F + + D V +T++I+ YL +A ++F ++ +R D
Sbjct: 42 LVNRYAKLGNPRDAQKVFGYIQDPDRVTYTSLINLYLSTQLPIKAFSVFSKLVNEGLRPD 101
Query: 82 EFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
+ V L+ + VG ALIDMYC+ G+++ AQ VF
Sbjct: 102 SHSVVGALSACGKKQDLLNGKLVHGMIFRFQLGANSIVGNALIDMYCRNGEIKIAQLVFK 161
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+M KD +WT+++ G + ++A +F +M
Sbjct: 162 QMGIKDVSSWTSLLNGFVMCNGLESARRVFDEM 194
Score = 42.7 bits (99), Expect = 0.057, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L++ Y K G+ AQ+VF + D+ T+T++I + A +FS+++ +R D
Sbjct: 42 LVNRYAKLGNPRDAQKVFGYIQDPDRVTYTSLINLYLSTQLPIKAFSVFSKLVNEGLRPD 101
Query: 162 EVTYVGVLSAC 172
+ VG LSAC
Sbjct: 102 SHSVVGALSAC 112
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 18/136 (13%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYLR 59
A++IF + KDV SWTT++S + + G+ + A + F M E + V + ++ G
Sbjct: 289 AMKIFDRLVKKDVFSWTTMISAHSSHGKGNHALEVFYDMLESGVIPNDVTFLLVLSGCSH 348
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119
EA LF M F I ++D+ C+ G +E+A+ +
Sbjct: 349 SGLLVEANKLFNGMIQC-------------YGFEPKIEHYGCMVDLLCRAGLLEEAKELI 395
Query: 120 WKM-LRKDKFTWTAMI 134
M + D W +++
Sbjct: 396 DNMPMDPDAVIWRSLL 411
>gi|125564403|gb|EAZ09783.1| hypothetical protein OsI_32071 [Oryza sativa Indica Group]
Length = 628
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 65/194 (33%), Positives = 101/194 (52%), Gaps = 22/194 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A++IF +MK + SW +++ + G ++ A F PE + + WTAMI G+ R
Sbjct: 260 AVQIFESMKTRTTASWNSLIDAHARFGYIEQAALLFESAPETNIISWTAMIGGFARNGLT 319
Query: 64 REALTLFREMQTSN-IRRDEFTTVRILTT---------------------FNNDIFVGIA 101
EAL F +M T I+ D+FT +L F + ++V
Sbjct: 320 SEALAHFVKMLTQEYIQPDDFTFGAVLHACASAPCLASGRMVHSCAFQGGFASYLYVANN 379
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+DMY KCGDVE A VF + +KD +W M+ G AI+G AL+++ M ++ D
Sbjct: 380 LVDMYAKCGDVEGANNVFDAIHQKDLVSWNTMLFGFAINGLPKEALEVYEIMTYHNVSPD 439
Query: 162 EVTYVGVLSACTHN 175
EVT+ G+L+AC+H+
Sbjct: 440 EVTFTGLLTACSHS 453
Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 51/215 (23%), Positives = 88/215 (40%), Gaps = 53/215 (24%)
Query: 11 MKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 70
M ++ +SW +++ ++ G +++A + F +MP + V W ++ G+ R ++ L LF
Sbjct: 135 MPERNALSWCSLLHAFVVSGHMELAHELFDEMPSKSNVAWNTLLMGHSRSGNAKQCLALF 194
Query: 71 REMQTSNIRRDEFT---------------------TVRILTTFNNDIFVGIALIDMYCK- 108
+M S + D+ T V + + +N V +LI Y K
Sbjct: 195 NQMWMSGLTCDDATLCILVDACAELPDPSTGFAIHKVVVQSGWNGIPEVNNSLISFYTKF 254
Query: 109 ----C--------------------------GDVEKAQRVFWKMLRKDKFTWTAMIVGLA 138
C G +E+A +F + +WTAMI G A
Sbjct: 255 SLLDCAVQIFESMKTRTTASWNSLIDAHARFGYIEQAALLFESAPETNIISWTAMIGGFA 314
Query: 139 ISGHGDTALDMFSQML-RASIRLDEVTYVGVLSAC 172
+G AL F +ML + I+ D+ T+ VL AC
Sbjct: 315 RNGLTSEALAHFVKMLTQEYIQPDDFTFGAVLHAC 349
>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 605
Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats.
Identities = 63/175 (36%), Positives = 96/175 (54%), Gaps = 21/175 (12%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
T+++ Y VD AR F ++ E V + AMI GY R NR EAL+LFREMQ N++
Sbjct: 171 TLINMYTECEDVDAARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKNLKP 230
Query: 81 DEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVF 119
+E T + +L++ F + V ALIDM+ KCG ++ A +F
Sbjct: 231 NEITLLSVLSSCALLGSLDLGKWIHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIF 290
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
M KD W+AMIV A G + ++ MF +M +++ DE+T++G+L+AC+H
Sbjct: 291 ENMRYKDTQAWSAMIVAYANHGQAENSMLMFERMRSENVQPDEITFLGLLNACSH 345
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 21/159 (13%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT--- 91
AR F M E D V++ ++ GY R E LF E+ ++ D +T +L
Sbjct: 84 ARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLKACAV 143
Query: 92 ------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
+++++V LI+MY +C DV+ A+ VF +++ + AM
Sbjct: 144 AKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAM 203
Query: 134 IVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
I G A + AL +F +M +++ +E+T + VLS+C
Sbjct: 204 ITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSC 242
Score = 40.4 bits (93), Expect = 0.26, Method: Composition-based stats.
Identities = 37/162 (22%), Positives = 71/162 (43%), Gaps = 23/162 (14%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T ++ + G +D A F M +D W+AMI Y + ++ +F M++ N++
Sbjct: 271 TALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAENSMLMFERMRSENVQ 330
Query: 80 RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT-----WTAMI 134
DE T F+G L++ G VE+ + F M+ + + +M+
Sbjct: 331 PDEIT------------FLG--LLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYGSMV 376
Query: 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC-THN 175
L +GH + A + ++ I + + +L+AC +HN
Sbjct: 377 DLLGRAGHLEDAYEFIDKL---PISPTPMLWRILLAACSSHN 415
>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
Length = 707
Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats.
Identities = 70/197 (35%), Positives = 97/197 (49%), Gaps = 25/197 (12%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINR----GQVDIARQYFAQMPERDYVLWTAMIDGYL 58
L + G M DV + S IN G+ +AR F + R+ VLWTA++
Sbjct: 252 LGLHVHGKMLTSDVECDAYVSSAIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASCF 311
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIF 97
+ F EAL LF +M+ N++ +EFT +L F + +
Sbjct: 312 QNGCFEEALNLFSKMEQENVKSNEFTYAVLLNACAGLSARRNGSLLHGHSEKSGFKHHVM 371
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
VG ALI+MY K GD+E A++VF M+ +D TW AMI G + G G AL +F ML A
Sbjct: 372 VGNALINMYAKSGDIEAAKKVFSDMMHRDIITWNAMICGFSHHGLGKKALLVFQDMLAAE 431
Query: 158 IRLDEVTYVGVLSACTH 174
+ VT+ GVLSAC H
Sbjct: 432 EHPNYVTFTGVLSACGH 448
Score = 68.9 bits (167), Expect = 8e-10, Method: Composition-based stats.
Identities = 47/180 (26%), Positives = 87/180 (48%), Gaps = 24/180 (13%)
Query: 16 VISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFR-EALTLFREM- 73
+I ++++ Y QV IA F +MPER+ V W+A++ GYL +N F + + L ++M
Sbjct: 66 IIEVNSLINFYAKVNQVSIAHNLFDRMPERNVVSWSALMTGYL-LNGFSLKVIRLLKDMI 124
Query: 74 QTSNIRRDEFTT---------------------VRILTTFNNDIFVGIALIDMYCKCGDV 112
N+ +E+ + + T F+ +V AL+ MY KC V
Sbjct: 125 SEGNVSPNEYILAIAISSCCDRGRVEEGRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIV 184
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+ A V+ ++ D + +++ L +G+ L++ M+ S++ D+VT+V S C
Sbjct: 185 QDAMGVWNEVPVNDIVAYNSILSSLVENGYLREGLEVLRSMVSESVKWDKVTFVNAFSLC 244
>gi|125539877|gb|EAY86272.1| hypothetical protein OsI_07642 [Oryza sativa Indica Group]
Length = 596
Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats.
Identities = 63/194 (32%), Positives = 97/194 (50%), Gaps = 28/194 (14%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M +D +SWT++++GY +D A Q F MP +D + WTA+I G+ + A
Sbjct: 227 LFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIA 286
Query: 67 LTLFREMQTSNIRRDEFTTVRILTT--------------------------FNNDIFVGI 100
L LF M + F V L FN +F+
Sbjct: 287 LELFERMTGEGVVPTPFALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFN--VFIHN 344
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
ALIDMY KCGD+ A VF +ML +D +W +M+ G + +G G +L +F +ML+ ++
Sbjct: 345 ALIDMYSKCGDMVAAMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQP 404
Query: 161 DEVTYVGVLSACTH 174
VT++ VL+AC+H
Sbjct: 405 TYVTFLAVLTACSH 418
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 30/180 (16%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYIN-RGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRV 60
+L F ++ +K+ S+ ++++ RG + A + MP R+ V + +I R
Sbjct: 83 SLAAFDDLPHKNAHSYNSLLAALARGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARH 142
Query: 61 NRFREALTLF------REMQTSNIRRDEFTTVR---------------------ILTTFN 93
R EAL +F R + + D FT V +++
Sbjct: 143 GRESEALRVFAQLARDRGLGQQQVAIDRFTVVSAASACAGLRDARHLRELHGAVVVSGME 202
Query: 94 NDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+ + A++D Y K G VE A+ +F +M +D +WT+MI G + D A+ +F M
Sbjct: 203 VTVIMANAMVDAYSKAGRVEDARGLFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMM 262
>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 110/200 (55%), Gaps = 26/200 (13%)
Query: 1 MGFALEIFGNMKNKDV----ISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDG 56
+G +++ +++ D+ + + +V+ Y G + ARQ F ++ ++D W+A+I G
Sbjct: 196 LGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFG 255
Query: 57 YLRVNRFREALTLFREMQT-SNIRRDEFTTVRIL---------------------TTFNN 94
Y++ NR EAL LFRE+ SN+R +E T + ++ T +
Sbjct: 256 YVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGH 315
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML 154
+ + +LIDM+ KCGD++ A+R+F M KD +W +M+ G A+ G G AL F M
Sbjct: 316 SVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQ 375
Query: 155 RASIRLDEVTYVGVLSACTH 174
++ DE+T++GVL+AC+H
Sbjct: 376 TTDLQPDEITFIGVLTACSH 395
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 99/186 (53%), Gaps = 22/186 (11%)
Query: 11 MKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 70
M + D+ TT+++ Y G + AR F +M R+ V+WT+MI GY++ + EAL L+
Sbjct: 109 MLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLY 168
Query: 71 REMQTSNIRRDEFTTVRILTTFN--NDIFVGI-------------------ALIDMYCKC 109
++M+ DE T +++ D+ VG+ AL++MY KC
Sbjct: 169 KKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKC 228
Query: 110 GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS-IRLDEVTYVGV 168
GD++ A++VF K+ KD + W+A+I G + AL +F ++ S +R +EVT + V
Sbjct: 229 GDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAV 288
Query: 169 LSACTH 174
+SAC
Sbjct: 289 ISACAQ 294
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 87/178 (48%), Gaps = 19/178 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER-----DYVLWTAMID 55
+G+A +F + + DV++W +++ ++N A Q + +M ER D + +++
Sbjct: 28 VGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLK 87
Query: 56 GYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKA 115
G + F+ L ++ + ++D+++ L++MY CGD++ A
Sbjct: 88 GCALLLEFKVGKVLHGQV--------------VKYMLHSDLYIETTLLNMYAACGDLKSA 133
Query: 116 QRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+ +F +M ++K WT+MI G + + AL ++ +M DEVT ++SAC
Sbjct: 134 RFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACA 191
>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
Length = 710
Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats.
Identities = 61/192 (31%), Positives = 103/192 (53%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F ++DV+S+T +++GY +RG ++ A++ F ++P +D V W A+I GY
Sbjct: 157 AHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNN 216
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
+EAL LF+EM +N++ DE T V +++ +++ + AL
Sbjct: 217 KEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNAL 276
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
ID+Y KCG+VE A +F + KD +W MI G AL +F +MLR+ ++
Sbjct: 277 IDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPND 336
Query: 163 VTYVGVLSACTH 174
VT + +L AC
Sbjct: 337 VTMLSILPACAQ 348
Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 62/177 (35%), Positives = 91/177 (51%), Gaps = 23/177 (12%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
++ Y G+V+ A F + +D + W MI GY +N ++EAL LF+EM S +
Sbjct: 276 LIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPN 335
Query: 82 EFTTVRILTT--------FNNDIFVGI---------------ALIDMYCKCGDVEKAQRV 118
+ T + IL F I V I +LIDMY KCGD+E A +V
Sbjct: 336 DVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQV 395
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
F M + AMI G A+ G + A D+FS+M + I D++T+VG+LSAC+H+
Sbjct: 396 FNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHS 452
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 69/132 (52%), Gaps = 18/132 (13%)
Query: 44 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALI 103
E D + T++I Y++ R+++A +F + + D+ ALI
Sbjct: 135 ELDLYVHTSLISMYVKNGRWKDAHKVFD------------------GSSHRDVVSYTALI 176
Query: 104 DMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEV 163
Y G +E AQ++F ++ KD +W A+I G A +G+ ALD+F +M++ +++ DE
Sbjct: 177 TGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDES 236
Query: 164 TYVGVLSACTHN 175
T V V+SAC +
Sbjct: 237 TMVTVVSACAQS 248
>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 722
Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats.
Identities = 63/196 (32%), Positives = 105/196 (53%), Gaps = 21/196 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A E F M +++ T +VSGY G++D A+ F Q ++D V WT MI Y+
Sbjct: 263 MDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVES 322
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVG 99
+ +EAL +F EM S I+ D + +++ N ++ +
Sbjct: 323 DYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSIN 382
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALI+MY KCG ++ + VF KM R++ +W++MI L++ G AL +F++M + ++
Sbjct: 383 NALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVE 442
Query: 160 LDEVTYVGVLSACTHN 175
+EVT+VGVL C+H+
Sbjct: 443 PNEVTFVGVLYGCSHS 458
Score = 82.4 bits (202), Expect = 7e-14, Method: Composition-based stats.
Identities = 56/207 (27%), Positives = 83/207 (40%), Gaps = 52/207 (25%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T + Y + G+++ AR F +M RD V W MI+ Y R EA LF EM+ SN+
Sbjct: 150 TGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVM 209
Query: 80 RDEFTTVRILTT-----------------FNNDI-------------------------- 96
DE I++ ND+
Sbjct: 210 PDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREF 269
Query: 97 ---------FVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
FV A++ Y KCG ++ AQ +F + +KD WT MI S + AL
Sbjct: 270 FRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEAL 329
Query: 148 DMFSQMLRASIRLDEVTYVGVLSACTH 174
+F +M + I+ D V+ V+SAC +
Sbjct: 330 RVFEEMCCSGIKPDVVSMFSVISACAN 356
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 40/78 (51%)
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML 154
D FV +DMY CG + A+ VF +M +D TW MI G D A +F +M
Sbjct: 145 DPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMK 204
Query: 155 RASIRLDEVTYVGVLSAC 172
+++ DE+ ++SAC
Sbjct: 205 DSNVMPDEMILCNIVSAC 222
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.328 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,603,881,995
Number of Sequences: 23463169
Number of extensions: 95625345
Number of successful extensions: 350654
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6280
Number of HSP's successfully gapped in prelim test: 3329
Number of HSP's that attempted gapping in prelim test: 263517
Number of HSP's gapped (non-prelim): 47944
length of query: 175
length of database: 8,064,228,071
effective HSP length: 132
effective length of query: 43
effective length of database: 9,262,057,059
effective search space: 398268453537
effective search space used: 398268453537
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 71 (32.0 bits)