BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045555
(175 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 200 bits (508), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 101/196 (51%), Positives = 128/196 (65%), Gaps = 21/196 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A+ IF +MK +DVISWT+IV GY+ RG + +AR YF QMP RD + WT MIDGYLR
Sbjct: 287 MDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRA 346
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
F E+L +FREMQ++ + DEFT V +LT ND+ VG
Sbjct: 347 GCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVG 406
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMY KCG EKAQ+VF M ++DKFTWTAM+VGLA +G G A+ +F QM SI+
Sbjct: 407 NALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQ 466
Query: 160 LDEVTYVGVLSACTHN 175
D++TY+GVLSAC H+
Sbjct: 467 PDDITYLGVLSACNHS 482
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 22/166 (13%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G V A + F ++PE D V+W MI G+ +V+ E + L+ M + D T +L
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141
Query: 90 TTFNND----------------------IFVGIALIDMYCKCGDVEKAQRVFWKMLRKDK 127
D ++V AL+ MY CG ++ A+ VF + ++D
Sbjct: 142 NGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDV 201
Query: 128 FTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
F+W MI G + ++++ +M R + VT + VLSAC+
Sbjct: 202 FSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACS 247
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 86/207 (41%), Gaps = 52/207 (25%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+V Y G +D+AR F + + D W MI GY R+ + E++ L EM+ + +
Sbjct: 174 NALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVS 233
Query: 80 RDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCGDVEKAQRV 118
T + +L+ + + + AL++ Y CG+++ A R+
Sbjct: 234 PTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRI 293
Query: 119 F----------W---------------------KMLRKDKFTWTAMIVGLAISGHGDTAL 147
F W +M +D+ +WT MI G +G + +L
Sbjct: 294 FRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESL 353
Query: 148 DMFSQMLRASIRLDEVTYVGVLSACTH 174
++F +M A + DE T V VL+AC H
Sbjct: 354 EIFREMQSAGMIPDEFTMVSVLTACAH 380
>sp|Q9C866|PPR65_ARATH Pentatricopeptide repeat-containing protein At1g31430
OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1
Length = 570
Score = 162 bits (410), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 118/192 (61%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F +M++K+V WT++V GY++ G++D AR F + P +D VLWTAM++GY++ NRF
Sbjct: 201 ARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRF 260
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
EAL LFR MQT+ IR D F V +LT D VG AL
Sbjct: 261 DEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTAL 320
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY KCG +E A VF+++ +D +WT++I GLA++G ALD++ +M +RLD
Sbjct: 321 VDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDA 380
Query: 163 VTYVGVLSACTH 174
+T+V VL+AC H
Sbjct: 381 ITFVAVLTACNH 392
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 95/207 (45%), Gaps = 52/207 (25%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-QTSNI 78
+++ Y + G+++I + F +MP+RD V W +I Y+ RF +A+ +F+ M Q SN+
Sbjct: 85 NSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDAIGVFKRMSQESNL 144
Query: 79 RRDEFTTVR--------------------ILTTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
+ DE T V ++T F + +G AL+DM+CKCG ++KA+ V
Sbjct: 145 KFDEGTIVSTLSACSALKNLEIGERIYRFVVTEFEMSVRIGNALVDMFCKCGCLDKARAV 204
Query: 119 FWKMLRKDKFTWTAMIVGLAISG------------------------HG-------DTAL 147
F M K+ WT+M+ G +G +G D AL
Sbjct: 205 FDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEAL 264
Query: 148 DMFSQMLRASIRLDEVTYVGVLSACTH 174
++F M A IR D V +L+ C
Sbjct: 265 ELFRCMQTAGIRPDNFVLVSLLTGCAQ 291
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 24/155 (15%)
Query: 41 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN------ 94
Q P +++ M+ F + L LF E++ + D FT +L +
Sbjct: 7 QTP--SLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIE 64
Query: 95 ---------------DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAI 139
D +V +L+ MY G +E +VF +M ++D +W +I
Sbjct: 65 GEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVG 124
Query: 140 SGHGDTALDMFSQMLRAS-IRLDEVTYVGVLSACT 173
+G + A+ +F +M + S ++ DE T V LSAC+
Sbjct: 125 NGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACS 159
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 22/130 (16%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D + T +V Y G ++ A + F ++ ERD WT++I G AL L+ EM+
Sbjct: 313 DKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLYYEME 372
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVG----------------------IALIDMYCKCGDV 112
+R D T V +LT N+ FV LID+ C+ G +
Sbjct: 373 NVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLIDLLCRAGLL 432
Query: 113 EKAQRVFWKM 122
++A+ + KM
Sbjct: 433 DEAEELIDKM 442
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 156 bits (394), Expect = 8e-38, Method: Composition-based stats.
Identities = 74/192 (38%), Positives = 118/192 (61%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A IF N++ + ++SWTT++SGY G +D++R+ F M E+D VLW AMI G ++ R
Sbjct: 311 ARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRG 370
Query: 64 REALTLFREMQTSNIRRDEFTTVRILT---------------------TFNNDIFVGIAL 102
++AL LF+EMQTSN + DE T + L+ + + ++ +G +L
Sbjct: 371 QDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSL 430
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DMY KCG++ +A VF + ++ T+TA+I GLA+ G TA+ F++M+ A I DE
Sbjct: 431 VDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDE 490
Query: 163 VTYVGVLSACTH 174
+T++G+LSAC H
Sbjct: 491 ITFIGLLSACCH 502
Score = 80.9 bits (198), Expect = 4e-15, Method: Composition-based stats.
Identities = 48/197 (24%), Positives = 92/197 (46%), Gaps = 52/197 (26%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89
G ++ AR+ F + P RD V W +I+GY ++ +A+ +++ M++ ++ D+ T + ++
Sbjct: 205 GDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLV 264
Query: 90 TTFN-----------------NDIFVGI----ALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
++ + N + + I AL+DM+ KCGD+ +A+R+F + ++
Sbjct: 265 SSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIV 324
Query: 129 TWTAMIVGLAISG-------------------------------HGDTALDMFSQMLRAS 157
+WT MI G A G G AL +F +M ++
Sbjct: 325 SWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSN 384
Query: 158 IRLDEVTYVGVLSACTH 174
+ DE+T + LSAC+
Sbjct: 385 TKPDEITMIHCLSACSQ 401
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 43/73 (58%)
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
A I M+ CGD+E A++VF + +D +W +I G G + A+ ++ M ++
Sbjct: 196 ASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKP 255
Query: 161 DEVTYVGVLSACT 173
D+VT +G++S+C+
Sbjct: 256 DDVTMIGLVSSCS 268
>sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2
SV=1
Length = 559
Score = 142 bits (359), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 111/193 (57%), Gaps = 21/193 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A IF M DV++W +++ G+ G +D A+ F +MP+R+ V W +MI G++R RF
Sbjct: 180 AWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRF 239
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
++AL +FREMQ +++ D FT V +L F + V AL
Sbjct: 240 KDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTAL 299
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
IDMYCKCG +E+ VF +K W +MI+GLA +G + A+D+FS++ R+ + D
Sbjct: 300 IDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDS 359
Query: 163 VTYVGVLSACTHN 175
V+++GVL+AC H+
Sbjct: 360 VSFIGVLTACAHS 372
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 84/213 (39%), Gaps = 55/213 (25%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQM--------PERDYVLWTA 52
M +A +F + +K+ W TI+ G+ ++A F M P+R + + +
Sbjct: 74 MNYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQR--LTYPS 131
Query: 53 MIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDV 112
+ Y R+ + R+ R++ I+ +D F+ ++ MY CG +
Sbjct: 132 VFKAYGRLGQARDG----RQLHGMVIKEG----------LEDDSFIRNTMLHMYVTCGCL 177
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDT--------------------------- 145
+A R+F M+ D W +MI+G A G D
Sbjct: 178 IEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNG 237
Query: 146 ----ALDMFSQMLRASIRLDEVTYVGVLSACTH 174
ALDMF +M ++ D T V +L+AC +
Sbjct: 238 RFKDALDMFREMQEKDVKPDGFTMVSLLNACAY 270
>sp|Q9MA50|PPR13_ARATH Pentatricopeptide repeat-containing protein At1g05750,
chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2
SV=1
Length = 500
Score = 140 bits (353), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 108/189 (57%), Gaps = 21/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M++K+ ++W T++ GY+ GQVD A + F +MPERD + WTAMI+G+++ EA
Sbjct: 131 VFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEA 190
Query: 67 LTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDM 105
L FREMQ S ++ D + L F N++ V +LID+
Sbjct: 191 LLWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDL 250
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
YC+CG VE A++VF+ M ++ +W ++IVG A +G+ +L F +M + D VT+
Sbjct: 251 YCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTF 310
Query: 166 VGVLSACTH 174
G L+AC+H
Sbjct: 311 TGALTACSH 319
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 74/202 (36%), Gaps = 55/202 (27%)
Query: 28 NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVR 87
++ + Q Q V WT+ I+ R R EA F +M + + + T +
Sbjct: 17 HKNHANPKIQRHNQSTSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIA 76
Query: 88 ILTTFN------------------------NDIFVGIALIDMYCK--------------- 108
+L+ N + VG A+I MY K
Sbjct: 77 LLSGCGDFTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYME 136
Query: 109 ----------------CGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152
G V+ A ++F KM +D +WTAMI G G+ + AL F +
Sbjct: 137 DKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFRE 196
Query: 153 MLRASIRLDEVTYVGVLSACTH 174
M + ++ D V + L+ACT+
Sbjct: 197 MQISGVKPDYVAIIAALNACTN 218
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 18/147 (12%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYL 58
FA ++F NM+ + V+SW +++ G+ G + YF +M E+ D V +T +
Sbjct: 259 FARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACS 318
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
V E L F+ M+ D + RI L+D+Y + G +E A ++
Sbjct: 319 HVGLVEEGLRYFQIMKC-----DYRISPRIEHYG--------CLVDLYSRAGRLEDALKL 365
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDT 145
M K ++ A S HG+
Sbjct: 366 VQSMPMKPNEVVIGSLLA-ACSNHGNN 391
>sp|Q38959|PP257_ARATH Pentatricopeptide repeat-containing protein At3g26630,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-A6 PE=2
SV=1
Length = 455
Score = 139 bits (351), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 105/191 (54%), Gaps = 22/191 (11%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE 65
++F M + ++SWTT++ G ++ Q+D A F QMP R+ V WTAMI Y++ R E
Sbjct: 175 KVFDKMPGRSIVSWTTMLYGLVSNSQLDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDE 234
Query: 66 ALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALID 104
A LFR MQ +++ +EFT V +L F D F+G ALID
Sbjct: 235 AFQLFRRMQVDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNGFVLDCFLGTALID 294
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMF-SQMLRASIRLDEV 163
MY KCG ++ A++VF M K TW +MI L + G G+ AL +F AS+ D +
Sbjct: 295 MYSKCGSLQDARKVFDVMQGKSLATWNSMITSLGVHGCGEEALSLFEEMEEEASVEPDAI 354
Query: 164 TYVGVLSACTH 174
T+VGVLSAC +
Sbjct: 355 TFVGVLSACAN 365
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 22/146 (15%)
Query: 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR-DEFT---- 84
G+ A F Q+ W MI ++ REAL LF M S+ + D+FT
Sbjct: 66 GETQYASLVFNQLQSPSTFTWNLMIRSLSVNHKPREALLLFILMMISHQSQFDKFTFPFV 125
Query: 85 --------TVRILTT---------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDK 127
++R+ T F ND+F L+D+Y KCG + ++VF KM +
Sbjct: 126 IKACLASSSIRLGTQVHGLAIKAGFFNDVFFQNTLMDLYFKCGKPDSGRKVFDKMPGRSI 185
Query: 128 FTWTAMIVGLAISGHGDTALDMFSQM 153
+WT M+ GL + D+A +F+QM
Sbjct: 186 VSWTTMLYGLVSNSQLDSAEIVFNQM 211
Score = 36.6 bits (83), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 94 NDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMF-SQ 152
ND + LI + G+ + A VF ++ FTW MI L+++ AL +F
Sbjct: 50 NDQLLVRQLISVSSSFGETQYASLVFNQLQSPSTFTWNLMIRSLSVNHKPREALLLFILM 109
Query: 153 MLRASIRLDEVTYVGVLSAC 172
M+ + D+ T+ V+ AC
Sbjct: 110 MISHQSQFDKFTFPFVIKAC 129
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 137 bits (346), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 108/192 (56%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A IFG M +DV+SWT++V+GY G V+ AR+ F +MP R+ W+ MI+GY + N F
Sbjct: 171 AGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCF 230
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
+A+ LF M+ + +E V ++++ + ++ +G AL
Sbjct: 231 EKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTAL 290
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+DM+ +CGD+EKA VF + D +W+++I GLA+ GH A+ FSQM+ +
Sbjct: 291 VDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRD 350
Query: 163 VTYVGVLSACTH 174
VT+ VLSAC+H
Sbjct: 351 VTFTAVLSACSH 362
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 84/206 (40%), Gaps = 43/206 (20%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G+A IF ++N ++ + ++ + + A ++ QM + +W I +
Sbjct: 67 LGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSR--IWPDNITFPFLI 124
Query: 61 NRFRE-ALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119
E L E S I R F ND++V +L+ MY CG + A R+F
Sbjct: 125 KASSEMECVLVGEQTHSQIVR---------FGFQNDVYVENSLVHMYANCGFIAAAGRIF 175
Query: 120 WKMLRKDKFTWTAMIVG--------------------------LAISGHG-----DTALD 148
+M +D +WT+M+ G + I+G+ + A+D
Sbjct: 176 GQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAID 235
Query: 149 MFSQMLRASIRLDEVTYVGVLSACTH 174
+F M R + +E V V+S+C H
Sbjct: 236 LFEFMKREGVVANETVMVSVISSCAH 261
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 56/137 (40%), Gaps = 17/137 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDY----VLWTAMIDGYLR 59
A+ +F + D +SW++I+ G G A YF+QM + V +TA++
Sbjct: 303 AIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSH 362
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119
+ L ++ N+++D R L + ++DM + G + +A+
Sbjct: 363 GGLVEKGLEIYE-----NMKKDHGIEPR-LEHYG-------CIVDMLGRAGKLAEAENFI 409
Query: 120 WKMLRKDKFTWTAMIVG 136
KM K ++G
Sbjct: 410 LKMHVKPNAPILGALLG 426
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 109/196 (55%), Gaps = 24/196 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +DVISWT +++ Y G ++ A + F +P +D V WTAM+ G+ + +
Sbjct: 203 ARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKP 262
Query: 64 REALTLFREMQTSNIRRDEFTTVRILT-----------------------TFNNDIFVGI 100
+EAL F M+ S IR DE T ++ + ++ + +G
Sbjct: 263 QEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGS 322
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML-RASIR 159
ALIDMY KCG+VE+A VF M K+ FT+++MI+GLA G AL +F M+ + I+
Sbjct: 323 ALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIK 382
Query: 160 LDEVTYVGVLSACTHN 175
+ VT+VG L AC+H+
Sbjct: 383 PNTVTFVGALMACSHS 398
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 78/192 (40%), Gaps = 52/192 (27%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT--- 91
AR+ + R+ LWTA+I GY +F EA+ ++ M+ I FT +L
Sbjct: 102 ARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGT 161
Query: 92 ---------FNND---------IFVGIALIDMYCKC------------------------ 109
F+ ++VG +IDMY KC
Sbjct: 162 MKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTEL 221
Query: 110 -------GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
G++E A +F + KD WTAM+ G A + AL+ F +M ++ IR DE
Sbjct: 222 IAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADE 281
Query: 163 VTYVGVLSACTH 174
VT G +SAC
Sbjct: 282 VTVAGYISACAQ 293
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 14/82 (17%)
Query: 4 ALEIFGNMKNKDVISWTTIV----------SGYINRGQ--VDIARQYFAQMPERDYVLWT 51
AL +F M + I T+ SG +++G+ D Q F P RD+ +T
Sbjct: 368 ALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDH--YT 425
Query: 52 AMIDGYLRVNRFREALTLFREM 73
M+D R R +EAL L + M
Sbjct: 426 CMVDLLGRTGRLQEALELIKTM 447
>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890
OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573
Score = 134 bits (336), Expect = 4e-31, Method: Composition-based stats.
Identities = 72/199 (36%), Positives = 112/199 (56%), Gaps = 28/199 (14%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F + +KD+ +W ++V+ Y G +D AR+ F +MPER+ + W+ +I+GY+ ++
Sbjct: 116 AQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKY 175
Query: 64 REALTLFREMQTSN-----IRRDEFTTVRILTTFNN---------------------DIF 97
+EAL LFREMQ +R +EFT +L+ DI
Sbjct: 176 KEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIV 235
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156
+G ALIDMY KCG +E+A+RVF + +KD ++AMI LA+ G D +FS+M +
Sbjct: 236 LGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTS 295
Query: 157 -SIRLDEVTYVGVLSACTH 174
+I + VT+VG+L AC H
Sbjct: 296 DNINPNSVTFVGILGACVH 314
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 36/121 (29%)
Query: 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF----------W----------------- 120
+L + D FV +L++MY CGD+ AQRVF W
Sbjct: 89 LLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDAR 148
Query: 121 ----KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML-----RASIRLDEVTYVGVLSA 171
+M ++ +W+ +I G + G ALD+F +M A +R +E T VLSA
Sbjct: 149 KLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSA 208
Query: 172 C 172
C
Sbjct: 209 C 209
>sp|Q1PEU4|PP201_ARATH Pentatricopeptide repeat-containing protein At2g44880
OS=Arabidopsis thaliana GN=PCMP-E9 PE=2 SV=2
Length = 555
Score = 133 bits (335), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 111/196 (56%), Gaps = 23/196 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +F M +K VI+WTT++ GY N +D AR+ F MPER+ V W MI GY +
Sbjct: 192 MTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQN 251
Query: 61 NRFREALTLFREMQ-TSNIRRDEFTTVRILTTFNN---------------------DIFV 98
+ +E + LF+EMQ T+++ D+ T + +L ++ + V
Sbjct: 252 KQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKV 311
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
A++DMY KCG++EKA+R+F +M K +W AMI G A++G+ ALD+F M+
Sbjct: 312 CTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEE- 370
Query: 159 RLDEVTYVGVLSACTH 174
+ DE+T + V++AC H
Sbjct: 371 KPDEITMLAVITACNH 386
Score = 86.7 bits (213), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 86/173 (49%), Gaps = 20/173 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE-RDYVLWTAMIDGYLR 59
MG A F M ++ +SWT ++SGYI G++D+A + F QMP +D V++ AM+DG+++
Sbjct: 129 MGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGFVK 188
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119
A LF EM TV TT +I YC D++ A+++F
Sbjct: 189 SGDMTSARRLFDEMT--------HKTVITWTT----------MIHGYCNIKDIDAARKLF 230
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM-LRASIRLDEVTYVGVLSA 171
M ++ +W MI G + + +F +M S+ D+VT + VL A
Sbjct: 231 DAMPERNLVSWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPA 283
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 31/161 (19%)
Query: 16 VISWTTIVSGYINRGQVDIARQYFAQMPERD-YVLWTAMIDGYLRVNRFREALTLFREMQ 74
VIS + + GY AR+ F Q P+RD L +MI YL ++ ++ L+R+++
Sbjct: 18 VISASAVGIGY--------ARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLR 69
Query: 75 TSN-IRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDV 112
D FT + + F D++V ++DMY K G +
Sbjct: 70 KETCFAPDNFTFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKM 129
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
A+ F +M + + +WTA+I G G D A +F QM
Sbjct: 130 GCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQM 170
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 130 bits (328), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 107/192 (55%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M +DVISW +++SGY GQ+ A+ F M ++ V WTAMI GY + +
Sbjct: 163 AHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCY 222
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
EA+ FREMQ + I DE + + +L + F V AL
Sbjct: 223 VEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNAL 282
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I+MY KCG + +A ++F +M KD +W+ MI G A G+ A++ F++M RA ++ +
Sbjct: 283 IEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNG 342
Query: 163 VTYVGVLSACTH 174
+T++G+LSAC+H
Sbjct: 343 ITFLGLLSACSH 354
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 31/105 (29%)
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLA---------------------- 138
ALIDMY K D+ A +VF +M +D +W +++ G A
Sbjct: 149 ALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVS 208
Query: 139 ----ISGHGD-----TALDMFSQMLRASIRLDEVTYVGVLSACTH 174
ISG+ A+D F +M A I DE++ + VL +C
Sbjct: 209 WTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQ 253
>sp|Q56X05|PPR15_ARATH Pentatricopeptide repeat-containing protein At1g06145
OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2
Length = 577
Score = 130 bits (326), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 105/195 (53%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A + M K+ + +++GY+ G ++ A F QMP +D + WT MI GY +
Sbjct: 206 MDSANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQN 265
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILT-----------------TFNN----DIFVG 99
R+REA+ +F +M I DE T +++ T N D+++G
Sbjct: 266 KRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIG 325
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+DMY KCG +E+A VF+ + +K+ F W ++I GLA G AL MF++M S++
Sbjct: 326 SALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVK 385
Query: 160 LDEVTYVGVLSACTH 174
+ VT+V V +ACTH
Sbjct: 386 PNAVTFVSVFTACTH 400
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 78/155 (50%), Gaps = 18/155 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
TT++ Y G++ AR+ F +MPERD + WT M+ Y RV A +L +M N
Sbjct: 163 TTLIDFYSATGRIREARKVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQMSEKN-- 220
Query: 80 RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAI 139
E T+ LI+ Y G++E+A+ +F +M KD +WT MI G +
Sbjct: 221 --EATSN--------------CLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQ 264
Query: 140 SGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+ A+ +F +M+ I DEVT V+SAC H
Sbjct: 265 NKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAH 299
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/160 (19%), Positives = 64/160 (40%), Gaps = 19/160 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
N+D ++ + ++D+A QM E + ++ A+ G++ + +L L+
Sbjct: 57 NQDCRLMNQFITACTSFKRLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVR 116
Query: 73 MQTSNIRRDEFTTVRILTT-------------------FNNDIFVGIALIDMYCKCGDVE 113
M ++ +T ++ F + + LID Y G +
Sbjct: 117 MLRDSVSPSSYTYSSLVKASSFASRFGESLQAHIWKFGFGFHVKIQTTLIDFYSATGRIR 176
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+A++VF +M +D WT M+ D+A + +QM
Sbjct: 177 EARKVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQM 216
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 129 bits (324), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 101/189 (53%), Gaps = 21/189 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F + D +SW +++ GY+ G++DIA F +M E++ + WT MI GY++ + +EA
Sbjct: 172 LFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEA 231
Query: 67 LTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVGIALIDM 105
L LF EMQ S++ D + L T D +G LIDM
Sbjct: 232 LQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDM 291
Query: 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
Y KCG++E+A VF + +K WTA+I G A GHG A+ F +M + I+ + +T+
Sbjct: 292 YAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITF 351
Query: 166 VGVLSACTH 174
VL+AC++
Sbjct: 352 TAVLTACSY 360
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 21/129 (16%)
Query: 46 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT-------------- 91
D LW MI G+ + +L L++ M S+ + +T +L
Sbjct: 79 DTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIH 138
Query: 92 -------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGD 144
+ ND++ +LI+ Y G+ + A +F ++ D +W ++I G +G D
Sbjct: 139 AQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMD 198
Query: 145 TALDMFSQM 153
AL +F +M
Sbjct: 199 IALTLFRKM 207
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 101/195 (51%), Gaps = 21/195 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A E+F M ++V +W T+++GY G++ A+ F +MP+RD V W AMI GY +
Sbjct: 328 MEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQS 387
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVG 99
EAL LF +M+ R + + L+T + FVG
Sbjct: 388 GHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVG 447
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+ MYCKCG +E+A +F +M KD +W MI G + G G+ AL F M R ++
Sbjct: 448 NALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLK 507
Query: 160 LDEVTYVGVLSACTH 174
D+ T V VLSAC+H
Sbjct: 508 PDDATMVAVLSACSH 522
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 27/190 (14%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A + F +M +DV+SW TI++GY G++D ARQ F + P +D WTAM+ GY++
Sbjct: 238 ARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMV 297
Query: 64 REALTLFREMQTSN------------------IRRDEFT--TVRILTTFNNDIFVGIALI 103
EA LF +M N + ++ F R ++T+N +I
Sbjct: 298 EEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWN-------TMI 350
Query: 104 DMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEV 163
Y +CG + +A+ +F KM ++D +W AMI G + SGH AL +F QM R RL+
Sbjct: 351 TGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRS 410
Query: 164 TYVGVLSACT 173
++ LS C
Sbjct: 411 SFSSALSTCA 420
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 94/184 (51%), Gaps = 17/184 (9%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G A E+F M +DV SW T++SGY G VD AR F +MPE++ V W A++ Y++
Sbjct: 142 LGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQN 201
Query: 61 NRFREALTLFREMQT-----------SNIRRDEFTTVRILTTFNN--DIFVGIALIDMYC 107
++ EA LF+ + +++ + R N D+ +I Y
Sbjct: 202 SKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYA 261
Query: 108 KCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVG 167
+ G +++A+++F + +D FTWTAM+ G + + A ++F +M +EV++
Sbjct: 262 QSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKM----PERNEVSWNA 317
Query: 168 VLSA 171
+L+
Sbjct: 318 MLAG 321
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 18/147 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
AL +F M +S+ ++SGY+ G+ ++AR+ F +MPERD V W MI GY+R
Sbjct: 83 ALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNL 142
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+A LF E R + ++N ++ Y + G V+ A+ VF +M
Sbjct: 143 GKARELF-----------EIMPERDVCSWN-------TMLSGYAQNGCVDDARSVFDRMP 184
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMF 150
K+ +W A++ + + A +F
Sbjct: 185 EKNDVSWNALLSAYVQNSKMEEACMLF 211
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 22/163 (13%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ D+ W +S Y+ G+ + A + F +MP V + MI GYLR F A LF E
Sbjct: 61 DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDE 120
Query: 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA 132
M R L ++N +I Y + ++ KA+ +F M +D +W
Sbjct: 121 MPE-----------RDLVSWN-------VMIKGYVRNRNLGKARELFEIMPERDVCSWNT 162
Query: 133 MIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
M+ G A +G D A +F +M ++V++ +LSA N
Sbjct: 163 MLSGYAQNGCVDDARSVFDRMPEK----NDVSWNALLSAYVQN 201
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 68 TLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDK 127
+L R QT I++ + T +L ++DI I Y + G +A RVF +M R
Sbjct: 39 SLKRATQT-QIQKSQ--TKPLLKCGDSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSS 95
Query: 128 FTWTAMIVGLAISGHGDTALDMFSQM 153
++ MI G +G + A +F +M
Sbjct: 96 VSYNGMISGYLRNGEFELARKLFDEM 121
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 128 bits (322), Expect = 2e-29, Method: Composition-based stats.
Identities = 67/197 (34%), Positives = 106/197 (53%), Gaps = 23/197 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYL 58
M A E+F M ++ +SW+T+V GY G +++AR F +MP ++ V WT +I GY
Sbjct: 232 MSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYA 291
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIF 97
+EA L +M S ++ D + IL + ++ +
Sbjct: 292 EKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAY 351
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
V AL+DMY KCG+++KA VF + +KD +W M+ GL + GHG A+++FS+M R
Sbjct: 352 VLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREG 411
Query: 158 IRLDEVTYVGVLSACTH 174
IR D+VT++ VL +C H
Sbjct: 412 IRPDKVTFIAVLCSCNH 428
Score = 97.4 bits (241), Expect = 4e-20, Method: Composition-based stats.
Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 20/174 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+++F M +D +SW +++ G + G++ AR+ F +MP+RD + W M+DGY R
Sbjct: 173 AMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREM 232
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM- 122
+A LF +M N TV T ++ Y K GD+E A+ +F KM
Sbjct: 233 SKAFELFEKMPERN-------TVSWST-----------MVMGYSKAGDMEMARVMFDKMP 274
Query: 123 -LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
K+ TWT +I G A G A + QM+ + ++ D + +L+ACT +
Sbjct: 275 LPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTES 328
Score = 57.8 bits (138), Expect = 4e-08, Method: Composition-based stats.
Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 23/146 (15%)
Query: 31 QVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT 90
Q ++A + F Q+ E + L ++I + + ++ +A +F EMQ + D FT +L
Sbjct: 66 QTNLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLK 125
Query: 91 T---------------------FNNDIFVGIALIDMYCKCG--DVEKAQRVFWKMLRKDK 127
++DI+V ALID Y +CG V A ++F KM +D
Sbjct: 126 ACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDT 185
Query: 128 FTWTAMIVGLAISGHGDTALDMFSQM 153
+W +M+ GL +G A +F +M
Sbjct: 186 VSWNSMLGGLVKAGELRDARRLFDEM 211
Score = 30.8 bits (68), Expect = 4.9, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 10/107 (9%)
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKD 126
L +++ IRR+ + D+ + LI C A RVF ++ +
Sbjct: 32 LNQVKQLHAQIIRRN----------LHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPN 81
Query: 127 KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
++I A + A +FS+M R + D TY +L AC+
Sbjct: 82 VHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACS 128
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 128 bits (321), Expect = 2e-29, Method: Composition-based stats.
Identities = 70/195 (35%), Positives = 105/195 (53%), Gaps = 27/195 (13%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
IF +M ++VI+ T+++SGY AR F +M ER+ V W A+I GY + EA
Sbjct: 311 IFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEA 370
Query: 67 LTLFREMQTSNIRRDEFTTVRILTTF---------------------------NNDIFVG 99
L+LF ++ ++ ++ IL +DIFVG
Sbjct: 371 LSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVG 430
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
+LIDMY KCG VE+ VF KM+ +D +W AMI+G A +G+G+ AL++F +ML + +
Sbjct: 431 NSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEK 490
Query: 160 LDEVTYVGVLSACTH 174
D +T +GVLSAC H
Sbjct: 491 PDHITMIGVLSACGH 505
Score = 120 bits (301), Expect = 5e-27, Method: Composition-based stats.
Identities = 60/188 (31%), Positives = 97/188 (51%), Gaps = 21/188 (11%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE 65
++F M +++ +W ++V+G G +D A F MPERD W +M+ G+ + +R E
Sbjct: 76 QVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEE 135
Query: 66 ALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALID 104
AL F M +E++ +L+ F +D+++G AL+D
Sbjct: 136 ALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVD 195
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVT 164
MY KCG+V AQRVF +M ++ +W ++I +G ALD+F ML + + DEVT
Sbjct: 196 MYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVT 255
Query: 165 YVGVLSAC 172
V+SAC
Sbjct: 256 LASVISAC 263
Score = 67.4 bits (163), Expect = 4e-11, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 26/183 (14%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV + +V Y G V+ A++ F +M +R+ V W ++I + + EAL +F+ M
Sbjct: 186 DVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMML 245
Query: 75 TSNIRRDEFTTVRILTT----------------------FNNDIFVGIALIDMYCKCGDV 112
S + DE T +++ NDI + A +DMY KC +
Sbjct: 246 ESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRI 305
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
++A+ +F M ++ T+MI G A++ A MF++M ++ V++ +++
Sbjct: 306 KEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNV----VSWNALIAGY 361
Query: 173 THN 175
T N
Sbjct: 362 TQN 364
Score = 56.6 bits (135), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
I + F+N+IF+ LID Y KCG +E ++VF KM +++ +TW +++ GL G D A
Sbjct: 47 IKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEAD 106
Query: 148 DMFSQM 153
+F M
Sbjct: 107 SLFRSM 112
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 47/172 (27%), Positives = 76/172 (44%), Gaps = 26/172 (15%)
Query: 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 67
F + + D+ +++ Y+ G V+ F +M ERD V W AMI G+ + EAL
Sbjct: 419 FQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEAL 478
Query: 68 TLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--- 124
LFREM S + D T + +L+ + G VE+ + F M R
Sbjct: 479 ELFREMLESGEKPDHITMIGVLSACGH--------------AGFVEEGRHYFSSMTRDFG 524
Query: 125 ----KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+D +T ++G A G + A M +M ++ D V + +L+AC
Sbjct: 525 VAPLRDHYTCMVDLLGRA--GFLEEAKSMIEEM---PMQPDSVIWGSLLAAC 571
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 127 bits (319), Expect = 3e-29, Method: Composition-based stats.
Identities = 67/193 (34%), Positives = 105/193 (54%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M+ KD ++WTT++ GY + AR+ MP++D V W A+I Y + +
Sbjct: 286 AKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKP 345
Query: 64 REALTLFREMQ-TSNIRRDEFTTVRILTT---------------------FNNDIFVGIA 101
EAL +F E+Q N++ ++ T V L+ + V A
Sbjct: 346 NEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSA 405
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LI MY KCGD+EK++ VF + ++D F W+AMI GLA+ G G+ A+DMF +M A+++ +
Sbjct: 406 LIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPN 465
Query: 162 EVTYVGVLSACTH 174
VT+ V AC+H
Sbjct: 466 GVTFTNVFCACSH 478
Score = 91.3 bits (225), Expect = 3e-18, Method: Composition-based stats.
Identities = 57/213 (26%), Positives = 100/213 (46%), Gaps = 53/213 (24%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV +++ Y + G +D A + F + E+D V W +MI+G+++ +AL LF++M+
Sbjct: 165 DVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKME 224
Query: 75 TSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVE 113
+ +++ T V +L+ N ++ + A++DMY KCG +E
Sbjct: 225 SEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIE 284
Query: 114 KAQRVFWKMLRKDKFTWTAMIVGLAIS-------------------------------GH 142
A+R+F M KD TWT M+ G AIS G
Sbjct: 285 DAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGK 344
Query: 143 GDTALDMFSQM-LRASIRLDEVTYVGVLSACTH 174
+ AL +F ++ L+ +++L+++T V LSAC
Sbjct: 345 PNEALIVFHELQLQKNMKLNQITLVSTLSACAQ 377
Score = 70.5 bits (171), Expect = 6e-12, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 49/85 (57%)
Query: 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
+ + +D+FV +LI Y CGD++ A +VF + KD +W +MI G G D AL
Sbjct: 158 VKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKAL 217
Query: 148 DMFSQMLRASIRLDEVTYVGVLSAC 172
++F +M ++ VT VGVLSAC
Sbjct: 218 ELFKKMESEDVKASHVTMVGVLSAC 242
>sp|O22137|PP202_ARATH Pentatricopeptide repeat-containing protein At2g45350,
chloroplastic OS=Arabidopsis thaliana GN=CRR4 PE=3 SV=2
Length = 613
Score = 127 bits (318), Expect = 4e-29, Method: Composition-based stats.
Identities = 70/191 (36%), Positives = 108/191 (56%), Gaps = 22/191 (11%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+F M +DV++W T++ GY G V A+ F QMP RD V + +M+ GY++ EA
Sbjct: 274 LFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEA 333
Query: 67 LTLFREMQT-SNIRRDEFTTV----------RILTTFNNDIFV-----------GIALID 104
L +F +M+ S++ D+ T V R+ + +++ G+ALID
Sbjct: 334 LEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALID 393
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVT 164
MY KCG ++ A VF + K W AMI GLAI G G++A DM Q+ R S++ D++T
Sbjct: 394 MYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDDIT 453
Query: 165 YVGVLSACTHN 175
+VGVL+AC+H+
Sbjct: 454 FVGVLNACSHS 464
Score = 88.2 bits (217), Expect = 2e-17, Method: Composition-based stats.
Identities = 58/163 (35%), Positives = 85/163 (52%), Gaps = 20/163 (12%)
Query: 11 MKNKDVISWTTIVSGYINRGQ-VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 69
M+ K++ISW +++SGY VDIA + FA MPE+D + W +MIDGY++ R +A L
Sbjct: 215 MEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGL 274
Query: 70 FREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT 129
F M RRD T +ID Y K G V A+ +F +M +D
Sbjct: 275 FDVMP----RRDVVTWA--------------TMIDGYAKLGFVHHAKTLFDQMPHRDVVA 316
Query: 130 WTAMIVGLAISGHGDTALDMFSQMLRASIRL-DEVTYVGVLSA 171
+ +M+ G + + AL++FS M + S L D+ T V VL A
Sbjct: 317 YNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPA 359
Score = 62.8 bits (151), Expect = 1e-09, Method: Composition-based stats.
Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 23/176 (13%)
Query: 1 MGF---ALEIFGNMKN----KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAM 53
+GF ++I G +K D+ ++ Y+ G + ++RQ F +MP+RD V + +M
Sbjct: 134 LGFVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSM 193
Query: 54 IDGYLRVNRFREALTLF--REMQTSN-IRRDEFTTVRILTTFNNDIFVGI---------- 100
IDGY++ A LF M+ N I + + T+ DI +
Sbjct: 194 IDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLI 253
Query: 101 ---ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
++ID Y K G +E A+ +F M R+D TW MI G A G A +F QM
Sbjct: 254 SWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQM 309
Score = 37.7 bits (86), Expect = 0.038, Method: Composition-based stats.
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 21/129 (16%)
Query: 46 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL---------------- 89
D LW A+I + R+AL L M + + D+F+ +L
Sbjct: 85 DPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIH 144
Query: 90 -----TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGD 144
T +D+F+ LI +Y KCG + ++++F +M ++D ++ +MI G G
Sbjct: 145 GFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIV 204
Query: 145 TALDMFSQM 153
+A ++F M
Sbjct: 205 SARELFDLM 213
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 127 bits (318), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 107/197 (54%), Gaps = 23/197 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYL 58
+G A ++F M KDV W +++GY G++D AR MP R+ V WT +I GY
Sbjct: 167 LGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYA 226
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIF 97
+ R EA+ +F+ M N+ DE T + +L+ N +
Sbjct: 227 KSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVS 286
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
+ A+IDMY K G++ KA VF + ++ TWT +I GLA GHG AL MF++M++A
Sbjct: 287 LNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAG 346
Query: 158 IRLDEVTYVGVLSACTH 174
+R ++VT++ +LSAC+H
Sbjct: 347 VRPNDVTFIAILSACSH 363
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 85/218 (38%), Gaps = 57/218 (26%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYL---RVNRFREALTL 69
N+D ++ + N G + A F P + L MI N A+T+
Sbjct: 44 NRDNLNVAKFIEACSNAGHLRYAYSVFTHQPCPNTYLHNTMIRALSLLDEPNAHSIAITV 103
Query: 70 FREMQTSNIRRDEFT-------TVRI--------------LTTFNNDIFVGIALIDMYCK 108
+R++ + D FT VR+ + F++ + V LI MY
Sbjct: 104 YRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFS 163
Query: 109 CGDVEKAQRVFWKMLRKD---------------------------------KFTWTAMIV 135
CG + A+++F +ML KD + +WT +I
Sbjct: 164 CGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVIS 223
Query: 136 GLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
G A SG A+++F +ML ++ DEVT + VLSAC
Sbjct: 224 GYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACA 261
>sp|Q9MAT2|PPR10_ARATH Pentatricopeptide repeat-containing protein At1g04840
OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1
Length = 665
Score = 127 bits (318), Expect = 5e-29, Method: Composition-based stats.
Identities = 62/193 (32%), Positives = 106/193 (54%), Gaps = 21/193 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A +F +M ++ SW+T++ GY++ G+++ A+Q F MPE++ V WT +I+G+ +
Sbjct: 212 MHMATTLFRSMPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLINGFSQT 271
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVG 99
+ A++ + EM ++ +E+T +L+ + D +G
Sbjct: 272 GDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIG 331
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
AL+DMY KCG+++ A VF M KD +WTAMI G A+ G A+ F QM+ + +
Sbjct: 332 TALVDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEK 391
Query: 160 LDEVTYVGVLSAC 172
DEV ++ VL+AC
Sbjct: 392 PDEVVFLAVLTAC 404
Score = 75.5 bits (184), Expect = 2e-13, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 22/168 (13%)
Query: 10 NMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYLRVNRFRE 65
N + D ++V Y GQ+ A Q F + P+R ++W +I+GY R
Sbjct: 155 NFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYCRAKDMHM 214
Query: 66 ALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK 125
A TLFR M N ++T LI Y G++ +A+++F M K
Sbjct: 215 ATTLFRSMPERN--SGSWST----------------LIKGYVDSGELNRAKQLFELMPEK 256
Query: 126 DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+ +WT +I G + +G +TA+ + +ML ++ +E T VLSAC+
Sbjct: 257 NVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACS 304
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 23/137 (16%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T +V Y G++D A F+ M +D + WTAMI G+ RF +A+ FR+M S +
Sbjct: 332 TALVDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEK 391
Query: 80 RDEFTTVRILTTFNNDIFVGIAL----------------------IDMYCKCGDVEKAQR 117
DE + +LT N V + L +D+ + G + +A
Sbjct: 392 PDEVVFLAVLTACLNSSEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLNEAHE 451
Query: 118 VFWKM-LRKDKFTWTAM 133
+ M + D TW A+
Sbjct: 452 LVENMPINPDLTTWAAL 468
Score = 36.2 bits (82), Expect = 0.12, Method: Composition-based stats.
Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 25/146 (17%)
Query: 33 DIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL--- 89
D + F ER+ + A+I G RF ++ F M ++ D T +L
Sbjct: 77 DYSLSIFRNSEERNPFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSN 136
Query: 90 --------------TTFNN----DIFVGIALIDMYCKCGDVEKAQRVFW----KMLRKDK 127
T N D FV ++L+DMY K G ++ A +VF ++ ++
Sbjct: 137 SKLGFRWLGRALHAATLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESI 196
Query: 128 FTWTAMIVGLAISGHGDTALDMFSQM 153
W +I G + A +F M
Sbjct: 197 LIWNVLINGYCRAKDMHMATTLFRSM 222
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 99/184 (53%), Gaps = 21/184 (11%)
Query: 12 KNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFR 71
++ +++ W ++ GY+ G AR F +M +R V W MI GY F++A+ +FR
Sbjct: 204 RDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFR 263
Query: 72 EMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIALIDMYCKCG 110
EM+ +IR + T V +L + D +G ALIDMY KCG
Sbjct: 264 EMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCG 323
Query: 111 DVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLS 170
+EKA VF ++ R++ TW+AMI G AI G A+D F +M +A +R +V Y+ +L+
Sbjct: 324 IIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLT 383
Query: 171 ACTH 174
AC+H
Sbjct: 384 ACSH 387
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 79/211 (37%), Gaps = 69/211 (32%)
Query: 32 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE--ALTLFREMQTSN-IRRDEFTTVRI 88
+D A + F QMP+R+ W +I G+ + + A+TLF EM + + + FT +
Sbjct: 75 LDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSV 134
Query: 89 LTT---------------------FNNDIFVGIALIDMYCKC------------------ 109
L F D FV L+ MY C
Sbjct: 135 LKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKD 194
Query: 110 ---------------------------GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGH 142
GD + A+ +F KM ++ +W MI G +++G
Sbjct: 195 MVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGF 254
Query: 143 GDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
A+++F +M + IR + VT V VL A +
Sbjct: 255 FKDAVEVFREMKKGDIRPNYVTLVSVLPAIS 285
>sp|O04590|PPR88_ARATH Pentatricopeptide repeat-containing protein At1g62260,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E10 PE=2
SV=1
Length = 656
Score = 123 bits (308), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 100/192 (52%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M N+D SW +VSGY + G V++AR YF + PE+ V W ++I Y + +
Sbjct: 331 AFALFSEMPNRDAHSWNMMVSGYASVGNVELARHYFEKTPEKHTVSWNSIIAAYEKNKDY 390
Query: 64 REALTLFREMQTSNIRRDEFTTVRILT--------------------TFNNDIFVGIALI 103
+EA+ LF M + D T +L+ T D+ V ALI
Sbjct: 391 KEAVDLFIRMNIEGEKPDPHTLTSLLSASTGLVNLRLGMQMHQIVVKTVIPDVPVHNALI 450
Query: 104 DMYCKCGDVEKAQRVFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
MY +CG++ +++R+F +M L+++ TW AMI G A G+ AL++F M I
Sbjct: 451 TMYSRCGEIMESRRIFDEMKLKREVITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSH 510
Query: 163 VTYVGVLSACTH 174
+T+V VL+AC H
Sbjct: 511 ITFVSVLNACAH 522
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 83/153 (54%), Gaps = 21/153 (13%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +IF ++ ++ ++W T++SGY+ R +++ AR+ F MP+RD V W MI GY+
Sbjct: 59 ARDIFEKLEARNTVTWNTMISGYVKRREMNQARKLFDVMPKRDVVTWNTMISGYVSCGGI 118
Query: 64 R---EALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
R EA LF EM + RD F+ +++ + + +G AL+ +F
Sbjct: 119 RFLEEARKLFDEMPS----RDSFSWNTMISGYAKNRRIGEALL--------------LFE 160
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
KM ++ +W+AMI G +G D+A+ +F +M
Sbjct: 161 KMPERNAVSWSAMITGFCQNGEVDSAVVLFRKM 193
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 73/160 (45%), Gaps = 18/160 (11%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
K+V+SW +++ Y+ G V AR F QM +RD + W MIDGY+ V+R +A LF EM
Sbjct: 279 KNVVSWNSMIKAYLKVGDVVSARLLFDQMKDRDTISWNTMIDGYVHVSRMEDAFALFSEM 338
Query: 74 QTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
N D ++ Y G+VE A+ F K K +W ++
Sbjct: 339 P------------------NRDAHSWNMMVSGYASVGNVELARHYFEKTPEKHTVSWNSI 380
Query: 134 IVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
I + A+D+F +M + D T +LSA T
Sbjct: 381 IAAYEKNKDYKEAVDLFIRMNIEGEKPDPHTLTSLLSAST 420
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 21/140 (15%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQV---DIARQYFAQMPERDYVLWTAMIDGY 57
M A ++F M +DV++W T++SGY++ G + + AR+ F +MP RD W MI GY
Sbjct: 87 MNQARKLFDVMPKRDVVTWNTMISGYVSCGGIRFLEEARKLFDEMPSRDSFSWNTMISGY 146
Query: 58 LRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQR 117
+ R EAL LF +M N A+I +C+ G+V+ A
Sbjct: 147 AKNRRIGEALLLFEKMPERN------------------AVSWSAMITGFCQNGEVDSAVV 188
Query: 118 VFWKMLRKDKFTWTAMIVGL 137
+F KM KD A++ GL
Sbjct: 189 LFRKMPVKDSSPLCALVAGL 208
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 77/187 (41%), Gaps = 34/187 (18%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+G AL +F M ++ +SW+ +++G+ G+VD A F +MP +D A++ G ++
Sbjct: 152 IGEALLLFEKMPERNAVSWSAMITGFCQNGEVDSAVVLFRKMPVKDSSPLCALVAGLIKN 211
Query: 61 NRFREA-----------------LTLFREMQTSNIRRDEFTTVRIL-------------- 89
R EA + + + +R + R L
Sbjct: 212 ERLSEAAWVLGQYGSLVSGREDLVYAYNTLIVGYGQRGQVEAARCLFDQIPDLCGDDHGG 271
Query: 90 ---TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTA 146
F ++ ++I Y K GDV A+ +F +M +D +W MI G + A
Sbjct: 272 EFRERFCKNVVSWNSMIKAYLKVGDVVSARLLFDQMKDRDTISWNTMIDGYVHVSRMEDA 331
Query: 147 LDMFSQM 153
+FS+M
Sbjct: 332 FALFSEM 338
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 26/135 (19%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
I SGYI AR F ++ R+ V W MI GY++ +A LF M +RD
Sbjct: 51 IRSGYIAE-----ARDIFEKLEARNTVTWNTMISGYVKRREMNQARKLFDVMP----KRD 101
Query: 82 EFTTVRILTTFNNDIFVGIALIDMYCKCGDV---EKAQRVFWKMLRKDKFTWTAMIVGLA 138
+ T+N +I Y CG + E+A+++F +M +D F+W MI G A
Sbjct: 102 -------VVTWN-------TMISGYVSCGGIRFLEEARKLFDEMPSRDSFSWNTMISGYA 147
Query: 139 ISGHGDTALDMFSQM 153
+ AL +F +M
Sbjct: 148 KNRRIGEALLLFEKM 162
>sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3
SV=1
Length = 544
Score = 123 bits (308), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 105/192 (54%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M ++D ++ T +++ Y G + A + F + +D V WTAMIDG +R
Sbjct: 177 AKKMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEM 236
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
+AL LFREMQ N+ +EFT V +L+ ++ FVG AL
Sbjct: 237 NKALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNAL 296
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I+MY +CGD+ +A+RVF M KD ++ MI GLA+ G A++ F M+ R ++
Sbjct: 297 INMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQ 356
Query: 163 VTYVGVLSACTH 174
VT V +L+AC+H
Sbjct: 357 VTLVALLNACSH 368
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 82/191 (42%), Gaps = 48/191 (25%)
Query: 31 QVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT 90
VD A F+ + + L+TAMIDG++ R + ++L+ M +++ D + +L
Sbjct: 76 SVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLK 135
Query: 91 T-----------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--------- 124
F + VG+ ++++Y K G++ A+++F +M
Sbjct: 136 ACDLKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVM 195
Query: 125 ----------------------KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
KD WTAMI GL + + AL++F +M ++ +E
Sbjct: 196 INCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANE 255
Query: 163 VTYVGVLSACT 173
T V VLSAC+
Sbjct: 256 FTAVCVLSACS 266
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 58 LRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN-DIFVGIALIDMYCKCGDVEKAQ 116
LR++R + +++ R + NI +I+ TF++ D FV LI + V+ A
Sbjct: 24 LRLSRRKTLISVLRSCK--NIAHVPSIHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAY 81
Query: 117 RVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
VF + + + +TAMI G SG + ++ +M+ S+ D VL AC
Sbjct: 82 DVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKAC 137
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 68/171 (39%), Gaps = 26/171 (15%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+++ Y G ++ AR+ F M ++D + + MI G EA+ FR+M R
Sbjct: 294 NALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFR 353
Query: 80 RDEFTTVRILTTFNNDIFVGIAL----------------------IDMYCKCGDVEKAQR 117
++ T V +L ++ + I L +D+ + G +E+A R
Sbjct: 354 PNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYR 413
Query: 118 VFWKM-LRKDKFTWTAMIVGLAISGHGDTAL-DMFSQMLRASIRLDEVTYV 166
+ + D ++ I HG+ L + ++ L S D TYV
Sbjct: 414 FIENIPIEPDHIMLGTLLSACKI--HGNMELGEKIAKRLFESENPDSGTYV 462
>sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300
OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2
Length = 548
Score = 122 bits (307), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 110/198 (55%), Gaps = 27/198 (13%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+ +F M KD ++W +++G + ++D AR+ F + E+D V W AMI GY+
Sbjct: 197 AMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYP 256
Query: 64 REALTLFREMQTSNIRRDEFTTVRILT----------------------TFNNDIFVGI- 100
+EAL +F+EM+ + D T + +L+ + ++ I+VG
Sbjct: 257 KEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTP 316
Query: 101 ---ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
ALIDMY KCG +++A VF + +D TW +IVGLA+ H + +++MF +M R
Sbjct: 317 IWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLK 375
Query: 158 IRLDEVTYVGVLSACTHN 175
+ +EVT++GV+ AC+H+
Sbjct: 376 VWPNEVTFIGVILACSHS 393
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 79/190 (41%), Gaps = 25/190 (13%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
++ + G M N V+ + G + A + F ++P+ D + ++ G + +
Sbjct: 34 SMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKP 93
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT------------FNNDI---------FVGIAL 102
+ ++L+ EM+ + D +T +L F+ + +V AL
Sbjct: 94 EKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNAL 153
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I + CGD+ A +F + K W++M G A G D A+ +F +M D+
Sbjct: 154 ILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYK----DQ 209
Query: 163 VTYVGVLSAC 172
V + +++ C
Sbjct: 210 VAWNVMITGC 219
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 122 bits (307), Expect = 8e-28, Method: Composition-based stats.
Identities = 62/192 (32%), Positives = 106/192 (55%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F ++DV+S+T ++ GY +RG ++ A++ F ++P +D V W AMI GY +
Sbjct: 188 AHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNY 247
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
+EAL LF++M +N+R DE T V +++ F +++ + AL
Sbjct: 248 KEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNAL 307
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
ID+Y KCG++E A +F ++ KD +W +I G AL +F +MLR+ ++
Sbjct: 308 IDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPND 367
Query: 163 VTYVGVLSACTH 174
VT + +L AC H
Sbjct: 368 VTMLSILPACAH 379
Score = 117 bits (293), Expect = 4e-26, Method: Composition-based stats.
Identities = 60/177 (33%), Positives = 95/177 (53%), Gaps = 23/177 (12%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
++ Y G+++ A F ++P +D + W +I GY +N ++EAL LF+EM S +
Sbjct: 307 LIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPN 366
Query: 82 EFTTVRILTT-----------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
+ T + IL N + +LIDMY KCGD+E A +V
Sbjct: 367 DVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQV 426
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
F +L K +W AMI G A+ G D + D+FS+M + I+ D++T+VG+LSAC+H+
Sbjct: 427 FNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHS 483
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 49/161 (30%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D+ T+++S Y+ G+++ A + F + P RD V +T
Sbjct: 168 DLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYT----------------------- 204
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
ALI Y G +E AQ++F ++ KD +W AMI
Sbjct: 205 --------------------------ALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMI 238
Query: 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
G A +G+ AL++F M++ ++R DE T V V+SAC +
Sbjct: 239 SGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQS 279
>sp|Q9SR01|PP212_ARATH Pentatricopeptide repeat-containing protein At3g04750,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E81 PE=2
SV=1
Length = 661
Score = 122 bits (307), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 101/197 (51%), Gaps = 23/197 (11%)
Query: 2 GFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVN 61
G A F MK KD+ SW T+V G++ G ++ A+ F QMP+RD V W +++ GY +
Sbjct: 286 GLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKG 345
Query: 62 -RFREALTLFREMQ-TSNIRRDEFTTVRILTTFNN---------------------DIFV 98
R LF EM ++ D T V +++ N D F+
Sbjct: 346 CDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLVIRLQLKGDAFL 405
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
ALIDMYCKCG +E+A VF KD WT+MI GLA G+G AL +F +M +
Sbjct: 406 SSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQQALQLFGRMQEEGV 465
Query: 159 RLDEVTYVGVLSACTHN 175
+ VT + VL+AC+H+
Sbjct: 466 TPNNVTLLAVLTACSHS 482
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 23/160 (14%)
Query: 19 WTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 78
W ++V Y+ G +A + FA+MP D + MI GY + EAL L+ +M + I
Sbjct: 169 WNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGI 228
Query: 79 RRDEFTTVRIL-----------------------TTFNNDIFVGIALIDMYCKCGDVEKA 115
DE+T + +L +++++ + AL+DMY KC + A
Sbjct: 229 EPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKESGLA 288
Query: 116 QRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155
+R F M +KD +W M+VG G + A +F QM +
Sbjct: 289 KRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPK 328
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160
+L+ Y + G+ A++VF +M D ++ MIVG A G AL ++ +M+ I
Sbjct: 171 SLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGIEP 230
Query: 161 DEVTYVGVLSACTH 174
DE T + +L C H
Sbjct: 231 DEYTVLSLLVCCGH 244
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 24/144 (16%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
D + ++ Y G ++ A F E+D LWT+MI G ++AL LF MQ
Sbjct: 402 DAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQQALQLFGRMQ 461
Query: 75 TSNIRRDEFTTVRILTTFNNDIFV--GI--------------------ALIDMYCKCGDV 112
+ + T + +LT ++ V G+ +L+D+ C+ G V
Sbjct: 462 EEGVTPNNVTLLAVLTACSHSGLVEEGLHVFNHMKDKFGFDPETEHYGSLVDLLCRAGRV 521
Query: 113 EKAQRVFWK--MLRKDKFTWTAMI 134
E+A+ + K +R + W +++
Sbjct: 522 EEAKDIVQKKMPMRPSQSMWGSIL 545
>sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840
OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2
Length = 545
Score = 122 bits (307), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 102/193 (52%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F M+ ++V SW ++SGY G V A++ F MP RD V W AM+ Y V +
Sbjct: 225 ARALFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCY 284
Query: 64 REALTLFREM-QTSNIRRDEFTTVRILTTFNN---------------------DIFVGIA 101
E L +F +M S + D FT V +L+ + + F+ A
Sbjct: 285 NEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATA 344
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+DMY KCG ++KA VF ++D TW ++I L++ G G AL++FS+M+ + +
Sbjct: 345 LVDMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPN 404
Query: 162 EVTYVGVLSACTH 174
+T++GVLSAC H
Sbjct: 405 GITFIGVLSACNH 417
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 75/160 (46%), Gaps = 19/160 (11%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV T+V+ Y G +IAR+ +MP RD V W +++ YL EA LF EM+
Sbjct: 174 DVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFDEME 233
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
N+ F +I Y G V++A+ VF M +D +W AM+
Sbjct: 234 ERNVESWNF------------------MISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMV 275
Query: 135 VGLAISGHGDTALDMFSQMLRASI-RLDEVTYVGVLSACT 173
A G + L++F++ML S + D T V VLSAC
Sbjct: 276 TAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACA 315
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 21/124 (16%)
Query: 51 TAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL--------------------- 89
++I Y + ALT+FREM + D+++ +L
Sbjct: 109 NSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIK 168
Query: 90 TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDM 149
+ D+FV L+++Y + G E A++V +M +D +W +++ G D A +
Sbjct: 169 SGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARAL 228
Query: 150 FSQM 153
F +M
Sbjct: 229 FDEM 232
>sp|Q9FLS9|PP441_ARATH Pentatricopeptide repeat-containing protein At5g61800
OS=Arabidopsis thaliana GN=PCMP-E8 PE=2 SV=1
Length = 499
Score = 122 bits (307), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 99/193 (51%), Gaps = 21/193 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
AL++F +DV+++ ++ G + ++ AR+ F MP RD V W ++I GY ++N
Sbjct: 171 ALQLFDENPQRDVVTYNVLIDGLVKAREIVRARELFDSMPLRDLVSWNSLISGYAQMNHC 230
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVGIAL 102
REA+ LF EM ++ D V L+ D F+ L
Sbjct: 231 REAIKLFDEMVALGLKPDNVAIVSTLSACAQSGDWQKGKAIHDYTKRKRLFIDSFLATGL 290
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+D Y KCG ++ A +F K FTW AMI GLA+ G+G+ +D F +M+ + I+ D
Sbjct: 291 VDFYAKCGFIDTAMEIFELCSDKTLFTWNAMITGLAMHGNGELTVDYFRKMVSSGIKPDG 350
Query: 163 VTYVGVLSACTHN 175
VT++ VL C+H+
Sbjct: 351 VTFISVLVGCSHS 363
>sp|Q9LXE8|PP386_ARATH Pentatricopeptide repeat-containing protein At5g15340,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H91 PE=2
SV=1
Length = 623
Score = 122 bits (306), Expect = 1e-27, Method: Composition-based stats.
Identities = 66/198 (33%), Positives = 102/198 (51%), Gaps = 30/198 (15%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
IF ++ K V+SWT ++ + ++ R+ F +MPER+ V WT M+ GYL RE
Sbjct: 168 IFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREV 227
Query: 67 LTLFREM---------------------QTSNIRRDEFTTVRILT--------TFNNDIF 97
L L EM Q+ N+ + V L +D+
Sbjct: 228 LELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVM 287
Query: 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157
VG AL+DMY KCG+++ + VF M +++ TW A+ GLA+ G G +DMF QM+R
Sbjct: 288 VGTALVDMYAKCGNIDSSMNVFRLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPQMIR-E 346
Query: 158 IRLDEVTYVGVLSACTHN 175
++ D++T+ VLSAC+H+
Sbjct: 347 VKPDDLTFTAVLSACSHS 364
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 82/205 (40%), Gaps = 55/205 (26%)
Query: 26 YINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEF 83
Y + G++ A++ F ++P E+D V WT ++ + R ++ LF EM+ + D+
Sbjct: 53 YASSGEMVTAQKLFDEIPLSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKRVEIDDV 112
Query: 84 TTVRILTTFN---------------------NDIFVGIALIDMYCKCGDVEKAQRVF--- 119
+ V + + V AL+DMY KCG V + +R+F
Sbjct: 113 SVVCLFGVCAKLEDLGFAQQGHGVAVKMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEEL 172
Query: 120 -------W---------------------KMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
W +M ++ WT M+ G +G L++ +
Sbjct: 173 EEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLA 232
Query: 152 QML-RASIRLDEVTYVGVLSACTHN 175
+M+ R L+ VT +LSAC +
Sbjct: 233 EMVFRCGHGLNFVTLCSMLSACAQS 257
Score = 38.1 bits (87), Expect = 0.027, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 97 FVGIALIDMYCKCGDVEKAQRVFWK--MLRKDKFTWTAMIVGLAISGHGDTALDMFSQML 154
++ AL Y G++ AQ++F + + KD WT ++ + G ++ +F +M
Sbjct: 44 YLSNALFQFYASSGEMVTAQKLFDEIPLSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMR 103
Query: 155 RASIRLDEVTYVGVLSAC 172
R + +D+V+ V + C
Sbjct: 104 RKRVEIDDVSVVCLFGVC 121
>sp|O80488|PPR23_ARATH Pentatricopeptide repeat-containing protein At1g09190
OS=Arabidopsis thaliana GN=PCMP-E70 PE=2 SV=1
Length = 484
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 100/197 (50%), Gaps = 23/197 (11%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
MG A ++F M ++V+ W ++ G+ + G V+ F QM ER V W +MI +
Sbjct: 153 MGDAQKVFDEMSERNVVVWNLMIRGFCDSGDVERGLHLFKQMSERSIVSWNSMISSLSKC 212
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTT----------------------FNNDIFV 98
R REAL LF EM DE T V +L F + I V
Sbjct: 213 GRDREALELFCEMIDQGFDPDEATVVTVLPISASLGVLDTGKWIHSTAESSGLFKDFITV 272
Query: 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML-RAS 157
G AL+D YCK GD+E A +F KM R++ +W +I G A++G G+ +D+F M+
Sbjct: 273 GNALVDFYCKSGDLEAATAIFRKMQRRNVVSWNTLISGSAVNGKGEFGIDLFDAMIEEGK 332
Query: 158 IRLDEVTYVGVLSACTH 174
+ +E T++GVL+ C++
Sbjct: 333 VAPNEATFLGVLACCSY 349
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 21/147 (14%)
Query: 33 DIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTF 92
D A + F+ + + +++ AMI Y V E+L+ F M++ I DE+T +L +
Sbjct: 53 DYANRVFSHIQNPNVLVFNAMIKCYSLVGPPLESLSFFSSMKSRGIWADEYTYAPLLKSC 112
Query: 93 NN--DIFVG-------------------IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWT 131
++ D+ G I ++++Y G + AQ+VF +M ++ W
Sbjct: 113 SSLSDLRFGKCVHGELIRTGFHRLGKIRIGVVELYTSGGRMGDAQKVFDEMSERNVVVWN 172
Query: 132 AMIVGLAISGHGDTALDMFSQMLRASI 158
MI G SG + L +F QM SI
Sbjct: 173 LMIRGFCDSGDVERGLHLFKQMSERSI 199
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 109 CGDVEK---AQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165
CG + A RVF + + + AMI ++ G +L FS M I DE TY
Sbjct: 46 CGSLSNSDYANRVFSHIQNPNVLVFNAMIKCYSLVGPPLESLSFFSSMKSRGIWADEYTY 105
Query: 166 VGVLSACT 173
+L +C+
Sbjct: 106 APLLKSCS 113
>sp|O23266|PP308_ARATH Pentatricopeptide repeat-containing protein At4g14050,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2
SV=3
Length = 612
Score = 121 bits (303), Expect = 3e-27, Method: Composition-based stats.
Identities = 61/193 (31%), Positives = 108/193 (55%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A +F +++ K+ ISWT +VSGY G+ + A + F +P ++ WTA+I G+++ +
Sbjct: 159 AKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKG 218
Query: 64 REALTLFREMQ----------------------TSNIRRDEFTTVRILTTFNNDIFVGIA 101
EA ++F EM+ ++I + + I F++ +F+ A
Sbjct: 219 LEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNA 278
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
LIDMY KC DV A+ +F +M +D +WT++IVG+A G + AL ++ M+ ++ +
Sbjct: 279 LIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPN 338
Query: 162 EVTYVGVLSACTH 174
EVT+VG++ AC+H
Sbjct: 339 EVTFVGLIYACSH 351
Score = 65.9 bits (159), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 76/152 (50%), Gaps = 22/152 (14%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN-IR 79
T+V+ Y G A Q F +MP RD++ W +++ + N + L++F + +S+ +R
Sbjct: 43 TLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLR 102
Query: 80 RDEFTTVR---------------------ILTTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
D+F I++ + ND V +L+DMY KCG + A+ V
Sbjct: 103 PDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAV 162
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMF 150
F + K+ +WTAM+ G A SG + AL++F
Sbjct: 163 FDSIRVKNTISWTAMVSGYAKSGRKEEALELF 194
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 22/156 (14%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
++ Y V A+ F++M RD V WT++I G + + +AL L+ +M + ++ +
Sbjct: 279 LIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPN 338
Query: 82 EFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM-----LRKDKFTWTAMIVG 136
E T FVG LI G VEK + +F M +R +T ++
Sbjct: 339 EVT------------FVG--LIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDL 384
Query: 137 LAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
L SG D A ++ M DE T+ +LSAC
Sbjct: 385 LGRSGLLDEAENLIHTM---PFPPDEPTWAALLSAC 417
Score = 35.8 bits (81), Expect = 0.16, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISG-HGDTALDMFSQMLRASIRL 160
L+++Y KCG A +VF +M +D W +++ L + G T S + +R
Sbjct: 44 LVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRP 103
Query: 161 DEVTYVGVLSACTH 174
D+ + ++ AC +
Sbjct: 104 DDFVFSALVKACAN 117
>sp|Q9C501|PPR70_ARATH Pentatricopeptide repeat-containing protein At1g33350
OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1
Length = 538
Score = 121 bits (303), Expect = 3e-27, Method: Composition-based stats.
Identities = 67/198 (33%), Positives = 108/198 (54%), Gaps = 27/198 (13%)
Query: 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62
A ++F M ++V+SWT ++SGY G + A F MPERD W A++ +
Sbjct: 180 LARQLFDEMSERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGL 239
Query: 63 FREALTLFREM-QTSNIRRDEFTTVRILTT---------------------FNNDIFVGI 100
F EA++LFR M +IR +E T V +L+ ++D+FV
Sbjct: 240 FLEAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSN 299
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFT-WTAMIVGLAISGHGDTALDMFSQMLRAS-- 157
+L+D+Y KCG++E+A VF KM K T W +MI A+ G + A+ +F +M++ +
Sbjct: 300 SLVDLYGKCGNLEEASSVF-KMASKKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNIN 358
Query: 158 -IRLDEVTYVGVLSACTH 174
I+ D +T++G+L+ACTH
Sbjct: 359 DIKPDHITFIGLLNACTH 376
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 121 bits (303), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 100/189 (52%), Gaps = 21/189 (11%)
Query: 6 EIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE 65
++F ++ D + T +V+ G V AR+ F MPERD + W AMI GY +V RE
Sbjct: 164 KVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESRE 223
Query: 66 ALTLFREMQTSNIRRDEFTTVRILTTFN-----------------NDIFVGI----ALID 104
AL +F MQ ++ + + +L+ N I + + L+D
Sbjct: 224 ALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVD 283
Query: 105 MYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVT 164
+Y KCGD+EKA VFW M K+ +TW++ + GLA++G G+ L++FS M + + + VT
Sbjct: 284 LYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVT 343
Query: 165 YVGVLSACT 173
+V VL C+
Sbjct: 344 FVSVLRGCS 352
>sp|Q0WVU0|PP278_ARATH Pentatricopeptide repeat-containing protein At3g51320
OS=Arabidopsis thaliana GN=At3g51320 PE=2 SV=1
Length = 530
Score = 120 bits (302), Expect = 3e-27, Method: Composition-based stats.
Identities = 61/193 (31%), Positives = 102/193 (52%), Gaps = 21/193 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
+ A ++F + +D++SW +I++G + G V A + F +MP+++ + W MI YL
Sbjct: 169 LDLAKKLFVEIPKRDIVSWNSIIAGMVRNGDVLAAHKLFDEMPDKNIISWNIMISAYLGA 228
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRIL---------------------TTFNNDIFVG 99
N +++LFREM + + +E T V +L T N+ + +
Sbjct: 229 NNPGVSISLFREMVRAGFQGNESTLVLLLNACGRSARLKEGRSVHASLIRTFLNSSVVID 288
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMY KC +V A+R+F + ++K TW MI+ + G + L++F M+ +R
Sbjct: 289 TALIDMYGKCKEVGLARRIFDSLSIRNKVTWNVMILAHCLHGRPEGGLELFEAMINGMLR 348
Query: 160 LDEVTYVGVLSAC 172
DEVT+VGVL C
Sbjct: 349 PDEVTFVGVLCGC 361
Score = 37.7 bits (86), Expect = 0.035, Method: Composition-based stats.
Identities = 22/103 (21%), Positives = 48/103 (46%), Gaps = 31/103 (30%)
Query: 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISG------------------- 141
+L+ MY CG ++ A+++F ++ ++D +W ++I G+ +G
Sbjct: 158 SLMHMYTCCGALDLAKKLFVEIPKRDIVSWNSIIAGMVRNGDVLAAHKLFDEMPDKNIIS 217
Query: 142 ------------HGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+ ++ +F +M+RA + +E T V +L+AC
Sbjct: 218 WNIMISAYLGANNPGVSISLFREMVRAGFQGNESTLVLLLNAC 260
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 103/193 (53%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A EIF M ++ SW +++GYI G+++ A++ F++MP RD V W+ MI G F
Sbjct: 191 AREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSF 250
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNND---------------------IFVGIAL 102
E+ FRE+Q + + +E + +L+ + + V AL
Sbjct: 251 NESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNAL 310
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKF-TWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
IDMY +CG+V A+ VF M K +WT+MI GLA+ G G+ A+ +F++M + D
Sbjct: 311 IDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPD 370
Query: 162 EVTYVGVLSACTH 174
++++ +L AC+H
Sbjct: 371 GISFISLLHACSH 383
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 18/156 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
TT++ Y G V+ AR+ F +M + + V W A+I R N A +F +M
Sbjct: 145 TTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKM------ 198
Query: 80 RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAI 139
VR T++N ++ Y K G++E A+R+F +M +D +W+ MIVG+A
Sbjct: 199 -----LVRNHTSWN-------VMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAH 246
Query: 140 SGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
+G + + F ++ RA + +EV+ GVLSAC+ +
Sbjct: 247 NGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQS 282
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 117 bits (294), Expect = 3e-26, Method: Composition-based stats.
Identities = 65/186 (34%), Positives = 98/186 (52%), Gaps = 27/186 (14%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV ++ Y + G +D+AR+ F +MPER V W +MID +R + AL LFREMQ
Sbjct: 185 DVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQ 244
Query: 75 TSNIRRDEFTTVRILTTFNN------------------------DIFVGIALIDMYCKCG 110
S D +T +L+ D+ V +LI+MYCKCG
Sbjct: 245 RS-FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCG 303
Query: 111 DVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML--RASIRLDEVTYVGV 168
+ A++VF M ++D +W AMI+G A G + A++ F +M+ R ++R + VT+VG+
Sbjct: 304 SLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGL 363
Query: 169 LSACTH 174
L AC H
Sbjct: 364 LIACNH 369
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 24/164 (14%)
Query: 32 VDIARQYFAQMPERDYVLWTAMIDGYLR-VNRFREALTLFREM-QTSNIRRDEFTTVRIL 89
V+ A + F + +W +I V+R EA L+R+M + D+ T +L
Sbjct: 99 VNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVL 158
Query: 90 TT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128
F D++V LI +Y CG ++ A++VF +M +
Sbjct: 159 KACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLV 218
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+W +MI L G D+AL +F +M R S D T VLSAC
Sbjct: 219 SWNSMIDALVRFGEYDSALQLFREMQR-SFEPDGYTMQSVLSAC 261
Score = 33.9 bits (76), Expect = 0.62, Method: Composition-based stats.
Identities = 40/172 (23%), Positives = 68/172 (39%), Gaps = 47/172 (27%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M+ +D+ SW ++ G+ G+ + A +F +M ++
Sbjct: 308 AEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDK------------------ 349
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFV--GIALIDMYCKCGDVEKAQRVFWK 121
RE N+R + T V +L N+ FV G DM + +E A +
Sbjct: 350 RE-----------NVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHY-- 396
Query: 122 MLRKDKFTWTAMIVGL-AISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
IV L A +G+ A+DM M ++ D V + +L AC
Sbjct: 397 ----------GCIVDLIARAGYITEAIDMVMSM---PMKPDAVIWRSLLDAC 435
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 117 bits (294), Expect = 3e-26, Method: Composition-based stats.
Identities = 63/183 (34%), Positives = 98/183 (53%), Gaps = 21/183 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ D + W++++ Y G +D AR F ++ E+D V WT+MID Y + +R+RE +LF E
Sbjct: 250 DSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSE 309
Query: 73 MQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGD 111
+ S R +E+T +L F+ F +L+DMY KCG+
Sbjct: 310 LVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGN 369
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+E A+ V + D +WT++I G A +G D AL F +L++ + D VT+V VLSA
Sbjct: 370 IESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSA 429
Query: 172 CTH 174
CTH
Sbjct: 430 CTH 432
Score = 110 bits (274), Expect = 6e-24, Method: Composition-based stats.
Identities = 61/191 (31%), Positives = 100/191 (52%), Gaps = 22/191 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M N+D+ SW +V+GY G ++ AR+ F +M E+D WTAM+ GY++ ++
Sbjct: 139 ARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQP 198
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT----------------------FNNDIFVGIA 101
EAL L+ MQ R TV I ++D + +
Sbjct: 199 EEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSS 258
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+DMY KCG +++A+ +F K++ KD +WT+MI S +FS+++ + R +
Sbjct: 259 LMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPN 318
Query: 162 EVTYVGVLSAC 172
E T+ GVL+AC
Sbjct: 319 EYTFAGVLNAC 329
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 39/170 (22%), Positives = 74/170 (43%), Gaps = 24/170 (14%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+++V Y G ++ A+ P+ D V WT++I G + + EAL F + S +
Sbjct: 358 SSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTK 417
Query: 80 RDEFTTVRILTTFNN--------DIFVGIA--------------LIDMYCKCGDVEKAQR 117
D T V +L+ + + F I L+D+ + G E+ +
Sbjct: 418 PDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKS 477
Query: 118 VFWKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYV 166
V +M ++ KF W +++ G + G+ D A + ++ + + VTYV
Sbjct: 478 VISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPE-NPVTYV 526
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 105/183 (57%), Gaps = 21/183 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
+ DV +++V Y +++ + + F+++ RD + W +++ GY++ R+ EAL LFR+
Sbjct: 274 DSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQ 333
Query: 73 MQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGD 111
M T+ ++ ++ F ++IF+ AL+DMY KCG+
Sbjct: 334 MVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGN 393
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
++ A+++F +M D+ +WTA+I+G A+ GHG A+ +F +M R ++ ++V +V VL+A
Sbjct: 394 IKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTA 453
Query: 172 CTH 174
C+H
Sbjct: 454 CSH 456
Score = 100 bits (249), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 86/164 (52%), Gaps = 21/164 (12%)
Query: 32 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT 91
+D R+ F MP +D V + +I GY + + +AL + REM T++++ D FT +L
Sbjct: 192 IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPI 251
Query: 92 F---------------------NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTW 130
F ++D+++G +L+DMY K +E ++RVF ++ +D +W
Sbjct: 252 FSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISW 311
Query: 131 TAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+++ G +G + AL +F QM+ A ++ V + V+ AC H
Sbjct: 312 NSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAH 355
Score = 30.4 bits (67), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 54/141 (38%), Gaps = 18/141 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYLR 59
A +IF M D +SWT I+ G+ G A F +M + + V + A++
Sbjct: 397 ARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSH 456
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119
V EA F M + N ++ A+ D+ + G +E+A
Sbjct: 457 VGLVDEAWGYFNSMTK-------------VYGLNQELEHYAAVADLLGRAGKLEEAYNFI 503
Query: 120 WKM-LRKDKFTWTAMIVGLAI 139
KM + W+ ++ ++
Sbjct: 504 SKMCVEPTGSVWSTLLSSCSV 524
>sp|P0C7R0|PPR69_ARATH Pentatricopeptide repeat-containing protein At1g32415,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E56 PE=2
SV=1
Length = 761
Score = 117 bits (293), Expect = 4e-26, Method: Composition-based stats.
Identities = 62/184 (33%), Positives = 102/184 (55%), Gaps = 23/184 (12%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM- 73
D +SWT+++ GY+ G V A F ++ ++D V WT MI G ++ F EA +L +M
Sbjct: 399 DKVSWTSMIDGYLEAGDVSRAFGLFQKLHDKDGVTWTVMISGLVQNELFAEAASLLSDMV 458
Query: 74 -------------------QTSNIRRDEFTTVRILTT---FNNDIFVGIALIDMYCKCGD 111
TSN+ + + I T ++ D+ + +L+ MY KCG
Sbjct: 459 RCGLKPLNSTYSVLLSSAGATSNLDQGKHIHCVIAKTTACYDPDLILQNSLVSMYAKCGA 518
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+E A +F KM++KD +W +MI+GL+ G D AL++F +ML + + + VT++GVLSA
Sbjct: 519 IEDAYEIFAKMVQKDTVSWNSMIMGLSHHGLADKALNLFKEMLDSGKKPNSVTFLGVLSA 578
Query: 172 CTHN 175
C+H+
Sbjct: 579 CSHS 582
Score = 97.1 bits (240), Expect = 5e-20, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 79/150 (52%), Gaps = 18/150 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+E+F M ++V+SW T+V+G I G ++ A+Q F MP RD V W AMI GY+ +
Sbjct: 157 AVELFDEMPERNVVSWNTLVTGLIRNGDMEKAKQVFDAMPSRDVVSWNAMIKGYIENDGM 216
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
EA LF +M N + +++ YC+ GDV +A R+F +M
Sbjct: 217 EEAKLLFGDMSEKN------------------VVTWTSMVYGYCRYGDVREAYRLFCEMP 258
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
++ +WTAMI G A + AL +F +M
Sbjct: 259 ERNIVSWTAMISGFAWNELYREALMLFLEM 288
Score = 77.8 bits (190), Expect = 3e-14, Method: Composition-based stats.
Identities = 62/227 (27%), Positives = 99/227 (43%), Gaps = 62/227 (27%)
Query: 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66
+FG+M K+V++WT++V GY G V A + F +MPER+ V WTAMI G+ +REA
Sbjct: 222 LFGDMSEKNVVTWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTAMISGFAWNELYREA 281
Query: 67 LTLFREMQTS-----------------------NIRR-DEFTTVRILT----TFNNDIFV 98
L LF EM+ RR E ++++ T ++D +
Sbjct: 282 LMLFLEMKKDVDAVSPNGETLISLAYACGGLGVEFRRLGEQLHAQVISNGWETVDHDGRL 341
Query: 99 GIALIDMYC-----------------------------KCGDVEKAQRVFWKMLR-KDKF 128
+L+ MY K GD+E+A+ +F ++ DK
Sbjct: 342 AKSLVHMYASSGLIASAQSLLNESFDLQSCNIIINRYLKNGDLERAETLFERVKSLHDKV 401
Query: 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
+WT+MI G +G A +F ++ D VT+ ++S N
Sbjct: 402 SWTSMIDGYLEAGDVSRAFGLFQKLHDK----DGVTWTVMISGLVQN 444
Score = 74.3 bits (181), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/150 (32%), Positives = 71/150 (47%), Gaps = 12/150 (8%)
Query: 16 VISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 75
V+ WT+++S Y G +D AR F MPER+ V AM+ GY++ R EA TLFREM
Sbjct: 77 VVYWTSLLSKYAKTGYLDEARVLFEVMPERNIVTCNAMLTGYVKCRRMNEAWTLFREMPK 136
Query: 76 SNIR------------RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+ + R E ++ L+ + GD+EKA++VF M
Sbjct: 137 NVVSWTVMLTALCDDGRSEDAVELFDEMPERNVVSWNTLVTGLIRNGDMEKAKQVFDAMP 196
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+D +W AMI G + + A +F M
Sbjct: 197 SRDVVSWNAMIKGYIENDGMEEAKLLFGDM 226
Score = 35.4 bits (80), Expect = 0.21, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQM 42
A EIF M KD +SW +++ G + G D A F +M
Sbjct: 522 AYEIFAKMVQKDTVSWNSMIMGLSHHGLADKALNLFKEM 560
>sp|Q9LXY5|PP284_ARATH Pentatricopeptide repeat-containing protein At3g56550
OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1
Length = 581
Score = 116 bits (290), Expect = 9e-26, Method: Composition-based stats.
Identities = 64/195 (32%), Positives = 101/195 (51%), Gaps = 25/195 (12%)
Query: 5 LEIFGNMKNK----DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
LEI G++ D I T++V Y G V+IA + F +MP RD V W MI + V
Sbjct: 127 LEIHGSVIRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHV 186
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTF---------------------NNDIFVG 99
+AL++++ M + D +T V +L++ + +FV
Sbjct: 187 GLHNQALSMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCVFVS 246
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALIDMY KCG +E A VF M ++D TW +MI+G + GHG A+ F +M+ + +R
Sbjct: 247 NALIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVR 306
Query: 160 LDEVTYVGVLSACTH 174
+ +T++G+L C+H
Sbjct: 307 PNAITFLGLLLGCSH 321
Score = 31.2 bits (69), Expect = 4.0, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQM 42
A+ +F M+ +DV++W +++ GY G A +F +M
Sbjct: 262 AIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKM 300
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 115 bits (289), Expect = 1e-25, Method: Composition-based stats.
Identities = 63/196 (32%), Positives = 105/196 (53%), Gaps = 21/196 (10%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A E F M +++ T +VSGY G++D A+ F Q ++D V WT MI Y+
Sbjct: 263 MDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVES 322
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNN---------------------DIFVG 99
+ +EAL +F EM S I+ D + +++ N ++ +
Sbjct: 323 DYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSIN 382
Query: 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159
ALI+MY KCG ++ + VF KM R++ +W++MI L++ G AL +F++M + ++
Sbjct: 383 NALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVE 442
Query: 160 LDEVTYVGVLSACTHN 175
+EVT+VGVL C+H+
Sbjct: 443 PNEVTFVGVLYGCSHS 458
Score = 82.4 bits (202), Expect = 1e-15, Method: Composition-based stats.
Identities = 56/207 (27%), Positives = 83/207 (40%), Gaps = 52/207 (25%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T + Y + G+++ AR F +M RD V W MI+ Y R EA LF EM+ SN+
Sbjct: 150 TGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVM 209
Query: 80 RDEFTTVRILTT-----------------FNNDI-------------------------- 96
DE I++ ND+
Sbjct: 210 PDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREF 269
Query: 97 ---------FVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
FV A++ Y KCG ++ AQ +F + +KD WT MI S + AL
Sbjct: 270 FRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEAL 329
Query: 148 DMFSQMLRASIRLDEVTYVGVLSACTH 174
+F +M + I+ D V+ V+SAC +
Sbjct: 330 RVFEEMCCSGIKPDVVSMFSVISACAN 356
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 40/78 (51%)
Query: 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML 154
D FV +DMY CG + A+ VF +M +D TW MI G D A +F +M
Sbjct: 145 DPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMK 204
Query: 155 RASIRLDEVTYVGVLSAC 172
+++ DE+ ++SAC
Sbjct: 205 DSNVMPDEMILCNIVSAC 222
Score = 33.5 bits (75), Expect = 0.74, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 4 ALEIFGNMKNKDV----ISWTTIVSGYINRGQVDIARQYFAQMPERDYVL-----WTAMI 54
AL +F MK ++V +++ ++ G + G V+ ++ FA M + + + M+
Sbjct: 429 ALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMV 488
Query: 55 DGYLRVNRFREALTLFREMQTSN 77
D + R N REAL + M ++
Sbjct: 489 DLFGRANLLREALEVIESMPVAS 511
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 96/192 (50%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A IF M KD++SW ++SGY++ G + A+ F +M E++ + W MI G
Sbjct: 339 ARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFG 398
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
E L LF M+ ++ + + F++ + G AL
Sbjct: 399 EEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNAL 458
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
I MY KCG VE+A++VF M D +W A+I L GHG A+D++ +ML+ IR D
Sbjct: 459 ITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDR 518
Query: 163 VTYVGVLSACTH 174
+T + VL+AC+H
Sbjct: 519 ITLLTVLTACSH 530
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 21/176 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER-DYVLWTAMIDGYLRVNR 62
A ++F + KD SWTT+++GY+ G D+ + M + V + AMI GY+
Sbjct: 207 ARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGF 266
Query: 63 FREALTLFREMQTSNIRRDEFTTVRI--------LTTFNNDIFVGI------------AL 102
++EAL + R M +S I DEFT + L + + +L
Sbjct: 267 YQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDNSL 326
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
+ +Y KCG ++A+ +F KM KD +W A++ G SGH A +F +M +I
Sbjct: 327 VSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNI 382
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 99/233 (42%), Gaps = 60/233 (25%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYL 58
+ +A ++F + D I+ TT+VSGY G + +AR F + P RD V++ AMI G+
Sbjct: 65 LNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFS 124
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILT-------------TFNNDIF-------- 97
N A+ LF +M+ + D FT +L F+
Sbjct: 125 HNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYIT 184
Query: 98 -VGIALIDMYCKCGD----VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGD-------- 144
V AL+ +Y KC + A++VF ++L KD+ +WT M+ G +G+ D
Sbjct: 185 SVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEG 244
Query: 145 ------------------------TALDMFSQMLRASIRLDEVTYVGVLSACT 173
AL+M +M+ + I LDE TY V+ AC
Sbjct: 245 MDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACA 297
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILT-TFNNDIFVGIALIDMYCKCGDVEKAQRV 118
NR+ L L ++ ++++ I+T F + LID+YCK ++ A+++
Sbjct: 12 ANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQL 71
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL-DEVTYVGVLSACTHN 175
F ++ DK T M+ G SG A +F +A + + D V Y +++ +HN
Sbjct: 72 FDEISEPDKIARTTMVSGYCASGDITLARGVFE---KAPVCMRDTVMYNAMITGFSHN 126
>sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g33680
OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1
Length = 727
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 97/182 (53%), Gaps = 21/182 (11%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73
+ + + T +V Y G + AR+ F + ERD LWT++I GY++ + EAL L+R M
Sbjct: 355 RHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRM 414
Query: 74 QTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDV 112
+T+ I ++ T +L F ++ +G AL MY KCG +
Sbjct: 415 KTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSL 474
Query: 113 EKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
E VF + KD +W AMI GL+ +G GD AL++F +ML + D+VT+V ++SAC
Sbjct: 475 EDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISAC 534
Query: 173 TH 174
+H
Sbjct: 535 SH 536
Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 90/184 (48%), Gaps = 27/184 (14%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF---- 70
D+ T++V Y G V+ + FA MPER+ W+ M+ GY R EA+ +F
Sbjct: 152 DIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFL 211
Query: 71 REMQTSNIRRDEFTTVRILTTFNNDIFVGI---------------------ALIDMYCKC 109
RE + + FT V L++ I+VG+ AL+ MY KC
Sbjct: 212 REKEEGSDSDYVFTAV--LSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKC 269
Query: 110 GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVL 169
+ +A ++F ++ TW+AM+ G + +G A+ +FS+M A I+ E T VGVL
Sbjct: 270 ESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVL 329
Query: 170 SACT 173
+AC+
Sbjct: 330 NACS 333
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 15/173 (8%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIA---RQYFAQMPERDYVLWTAMIDGYLRV 60
A IF + KDV+SW ++++GY G + + Q F +M +D + + Y
Sbjct: 68 AHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDI-----LPNAYTLA 122
Query: 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
F+ +L Q+S + R V +++F DI+V +L+ MYCK G VE +VF
Sbjct: 123 GIFKAESSL----QSSTVGRQAHALVVKMSSF-GDIYVDTSLVGMYCKAGLVEDGLKVFA 177
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYV--GVLSA 171
M ++ +TW+ M+ G A G + A+ +F+ LR + YV VLS+
Sbjct: 178 YMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSS 230
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 21/173 (12%)
Query: 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81
+V+ Y ++ A + F +R+ + W+AM+ GY + EA+ LF M ++ I+
Sbjct: 262 LVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPS 321
Query: 82 EFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFW 120
E+T V +L F +F AL+DMY K G + A++ F
Sbjct: 322 EYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFD 381
Query: 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+ +D WT++I G + + AL ++ +M A I ++ T VL AC+
Sbjct: 382 CLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACS 434
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%)
Query: 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT 85
Y G ++ F + P +D V W AMI G + EAL LF EM + D+ T
Sbjct: 468 YSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTF 527
Query: 86 VRILTTFNNDIFV 98
V I++ ++ FV
Sbjct: 528 VNIISACSHKGFV 540
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISG---HGDTALDMFSQMLRASI 158
L++ Y KCG + KA +F ++ KD +W ++I G + +G T + +F +M I
Sbjct: 55 LVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDI 114
Query: 159 RLDEVTYVGVLSA 171
+ T G+ A
Sbjct: 115 LPNAYTLAGIFKA 127
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 104/193 (53%), Gaps = 22/193 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A IF M NK V++W +IV+GY+ G+VD A + F MPE++ V W +I G ++ + F
Sbjct: 391 AFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLF 450
Query: 64 REALTLFREMQT-SNIRRDEFTTVRILTTFNN---------------------DIFVGIA 101
EA+ +F MQ+ + D T + I + + D+ +G
Sbjct: 451 EEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTT 510
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161
L+DM+ +CGD E A +F + +D WTA I +A++G+ + A+++F M+ ++ D
Sbjct: 511 LVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPD 570
Query: 162 EVTYVGVLSACTH 174
V +VG L+AC+H
Sbjct: 571 GVAFVGALTACSH 583
Score = 73.2 bits (178), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 89/184 (48%), Gaps = 24/184 (13%)
Query: 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL-FRE 72
KD+ ++V Y G++D AR+ F +M ER+ V WT+MI GY R + ++A+ L FR
Sbjct: 167 KDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRM 226
Query: 73 MQTSNIRRDEFTTVRILTTFN----------------------NDIFVGIALIDMYCKCG 110
++ + + T V +++ ND+ V AL+DMY KC
Sbjct: 227 VRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVS-ALVDMYMKCN 285
Query: 111 DVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLS 170
++ A+R+F + + AM G AL +F+ M+ + +R D ++ + +S
Sbjct: 286 AIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAIS 345
Query: 171 ACTH 174
+C+
Sbjct: 346 SCSQ 349
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 22/147 (14%)
Query: 49 LWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT----------------- 91
++ ++I GY EA+ LF M S I D++T L+
Sbjct: 101 MYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLI 160
Query: 92 ----FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTAL 147
+ D+FV +L+ Y +CG+++ A++VF +M ++ +WT+MI G A A+
Sbjct: 161 VKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAV 220
Query: 148 DMFSQMLR-ASIRLDEVTYVGVLSACT 173
D+F +M+R + + VT V V+SAC
Sbjct: 221 DLFFRMVRDEEVTPNSVTMVCVISACA 247
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 21/160 (13%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
+ +V Y+ +D+A++ F + + L AM Y+R REAL +F M S +R
Sbjct: 275 SALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVR 334
Query: 80 RDEFTTVRILTTFNN--DIFVGI-------------------ALIDMYCKCGDVEKAQRV 118
D + + +++ + +I G ALIDMY KC + A R+
Sbjct: 335 PDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRI 394
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
F +M K TW +++ G +G D A + F M +I
Sbjct: 395 FDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNI 434
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 104/227 (45%), Gaps = 53/227 (23%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60
M A E+F +M K+ +SW ++SGYI G ++ A +F P R V WTAMI GY++
Sbjct: 171 MEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKA 230
Query: 61 --------------------------------NRFREALTLFREMQTSNIRRD------- 81
+R + L LFR M IR +
Sbjct: 231 KKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSA 290
Query: 82 -----EFTTVRI---------LTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDK 127
E + +++ +T ND+ +LI MYCKCG++ A ++F M +KD
Sbjct: 291 LLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDV 350
Query: 128 FTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
W AMI G A G+ D AL +F +M+ IR D +T+V VL AC H
Sbjct: 351 VAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNH 397
Score = 79.7 bits (195), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 76/171 (44%), Gaps = 19/171 (11%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A F M KD SW T+++GY RG+++ AR+ F M E++ V W AMI GY+
Sbjct: 143 AQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDL 202
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM- 122
+A F+ VR + + A+I Y K VE A+ +F M
Sbjct: 203 EKASHFFK-----------VAPVRGVVAWT-------AMITGYMKAKKVELAEAMFKDMT 244
Query: 123 LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173
+ K+ TW AMI G + + L +F ML IR + L C+
Sbjct: 245 VNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCS 295
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 21/172 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F + D S+ ++S Y+ + A+ +F +MP +D W MI GY R
Sbjct: 112 AHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEM 171
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123
+A LF M N ++N A+I Y +CGD+EKA F
Sbjct: 172 EKARELFYSMMEKN-----------EVSWN-------AMISGYIECGDLEKASHFFKVAP 213
Query: 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175
+ WTAMI G + + A MF M ++ + VT+ ++S N
Sbjct: 214 VRGVVAWTAMITGYMKAKKVELAEAMFKDM---TVNKNLVTWNAMISGYVEN 262
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 12/158 (7%)
Query: 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74
DV + T+++S Y G++ A + F M ++D V W AMI GY + +AL LFREM
Sbjct: 318 DVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMI 377
Query: 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMI 134
+ IR D T V +L N+ V I + E R + + D +T +
Sbjct: 378 DNKIRPDWITFVAVLLACNHAGLVNIGM-------AYFESMVRDYKVEPQPDHYTCMVDL 430
Query: 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
+G A G + AL + M R + +L AC
Sbjct: 431 LGRA--GKLEEALKLIRSM---PFRPHAAVFGTLLGAC 463
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 44/114 (38%), Gaps = 40/114 (35%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQM------PE---------- 44
+G A ++F MK KDV++W ++SGY G D A F +M P+
Sbjct: 335 LGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLA 394
Query: 45 ------------------RDYVL------WTAMIDGYLRVNRFREALTLFREMQ 74
RDY + +T M+D R + EAL L R M
Sbjct: 395 CNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMP 448
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 94 NDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
+ IF +I + GD++ A RVF M K+ TW ++++G++ S+M
Sbjct: 59 DQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDP---------SRM 109
Query: 154 LRASIRLDEVTYVGVLS 170
+ A DE+ S
Sbjct: 110 MEAHQLFDEIPEPDTFS 126
>sp|Q680Z7|PPR24_ARATH Pentatricopeptide repeat-containing protein At1g09220,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E25 PE=2
SV=1
Length = 504
Score = 114 bits (284), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 101/196 (51%), Gaps = 25/196 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A ++F M ++ ++W +++G N G + A + +MP R V WT +IDGY RV++
Sbjct: 177 AHKVFDEMPERNPVTWNVMITGLTNLGDFEKALCFLEKMPNRTVVSWTTIIDGYARVDKP 236
Query: 64 REALTLFREMQTSN-IRRDEFTTVRILTTFNN----------------------DIFVGI 100
+EA+ LF M + I+ +E T + IL N DI V
Sbjct: 237 KEAILLFSRMVACDAIKPNEITILAILPAVWNLGDLKMCGSVHAYVGKRGFVPCDIRVTN 296
Query: 101 ALIDMYCKCGDVEKAQRVFWKML--RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158
+LID Y KCG ++ A + F ++ RK+ +WT MI AI G G A+ MF M R +
Sbjct: 297 SLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAIHGMGKEAVSMFKDMERLGL 356
Query: 159 RLDEVTYVGVLSACTH 174
+ + VT + VL+AC+H
Sbjct: 357 KPNRVTMISVLNACSH 372
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151
F + ++V AL+ MY G++ A +VF +M ++ TW MI GL G + AL
Sbjct: 154 FESHVYVQTALVGMYLVGGNMIDAHKVFDEMPERNPVTWNVMITGLTNLGDFEKALCFLE 213
Query: 152 QM 153
+M
Sbjct: 214 KM 215
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 114 bits (284), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 98/182 (53%), Gaps = 21/182 (11%)
Query: 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 72
N DV + T+++S Y G+++ A + F ++P+R V WTA+ GY R REA+ LF++
Sbjct: 143 NHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKK 202
Query: 73 MQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGD 111
M ++ D + V++L+ + FV L+++Y KCG
Sbjct: 203 MVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGK 262
Query: 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171
+EKA+ VF M+ KD TW+ MI G A + +++F QML+ +++ D+ + VG LS+
Sbjct: 263 MEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSS 322
Query: 172 CT 173
C
Sbjct: 323 CA 324
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 88/176 (50%), Gaps = 21/176 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
TT+V+ Y G+++ AR F M E+D V W+ MI GY + +E + LF +M N++
Sbjct: 251 TTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLK 310
Query: 80 RDEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRV 118
D+F+ V L++ F ++F+ ALIDMY KCG + + V
Sbjct: 311 PDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEV 370
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
F +M KD A I GLA +GH + +F Q + I D T++G+L C H
Sbjct: 371 FKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVH 426
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 21/157 (13%)
Query: 39 FAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT------- 91
F+ + L+ ++I+G++ + F E L LF ++ + FT +L
Sbjct: 68 FSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSR 127
Query: 92 --------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGL 137
FN+D+ +L+ +Y G + A ++F ++ + TWTA+ G
Sbjct: 128 KLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGY 187
Query: 138 AISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
SG A+D+F +M+ ++ D V VLSAC H
Sbjct: 188 TTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVH 224
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/141 (19%), Positives = 56/141 (39%), Gaps = 18/141 (12%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE----RDYVLWTAMIDG 56
M E+F MK KD++ +SG G V ++ F Q + D + ++ G
Sbjct: 364 MARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCG 423
Query: 57 YLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQ 116
+ ++ L F + + R + + ++D++ + G ++ A
Sbjct: 424 CVHAGLIQDGLRFFNAISCV------YALKRTVEHYG-------CMVDLWGRAGMLDDAY 470
Query: 117 RVFWKM-LRKDKFTWTAMIVG 136
R+ M +R + W A++ G
Sbjct: 471 RLICDMPMRPNAIVWGALLSG 491
>sp|Q9C8L6|PPR80_ARATH Pentatricopeptide repeat-containing protein At1g53600,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E63 PE=2
SV=2
Length = 717
Score = 114 bits (284), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 96/192 (50%), Gaps = 21/192 (10%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A E+F M KD++SWT ++ G+ +G++ + F MPE+D + WTAMI ++ +
Sbjct: 360 AYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYY 419
Query: 64 REALTLFREMQTSNIRRDEFTTVRILTT---------------------FNNDIFVGIAL 102
EAL F +M + + +T +L+ ND+ V +L
Sbjct: 420 EEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSL 479
Query: 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
+ MYCKCG+ A ++F + + ++ MI G + +G G AL +FS + + +
Sbjct: 480 VSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNG 539
Query: 163 VTYVGVLSACTH 174
VT++ +LSAC H
Sbjct: 540 VTFLALLSACVH 551
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 22/172 (12%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63
A+ +F M K+V+S +++V GY G++ AR F +M ER+ + WTAMIDGY + F
Sbjct: 196 AVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMIDGYFKAGFF 255
Query: 64 REALTLFREMQ-------TSN------------IRRDEFTTVRILTT---FNNDIFVGIA 101
+ LF M+ SN +R E + + L + D+F+G +
Sbjct: 256 EDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNS 315
Query: 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153
L+ MY K G + +A+ VF M KD +W ++I GL A ++F +M
Sbjct: 316 LMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKM 367
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 87/175 (49%), Gaps = 21/175 (12%)
Query: 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYL 58
+G A E+F ++ K+ +S+ T+++G++ G+ D A +A+ P RD V ++ GYL
Sbjct: 129 LGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLYAETPVKFRDSVASNVLLSGYL 188
Query: 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
R ++ EA+ +F+ M ++ +++ YCK G + A+ +
Sbjct: 189 RAGKWNEAVRVFQGMAV------------------KEVVSCSSMVHGYCKMGRIVDARSL 230
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR-ASIRLDEVTYVGVLSAC 172
F +M ++ TWTAMI G +G + +F +M + ++++ T + AC
Sbjct: 231 FDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKAC 285
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 17/130 (13%)
Query: 23 VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDE 82
+S + G + A F QM R V W AMI Y + +A +F EM
Sbjct: 57 ISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEM--------- 107
Query: 83 FTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGH 142
VR+ T++N I A+I C D+ KA +F + K+ ++ MI G +G
Sbjct: 108 --PVRVTTSYNAMI---TAMIKNKC---DLGKAYELFCDIPEKNAVSYATMITGFVRAGR 159
Query: 143 GDTALDMFSQ 152
D A ++++
Sbjct: 160 FDEAEFLYAE 169
Score = 33.9 bits (76), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%)
Query: 90 TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDM 149
TT + IF + I + + G++++A+ +F +M + +W AMI A +G A +
Sbjct: 44 TTTSTAIFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQV 103
Query: 150 FSQM 153
F +M
Sbjct: 104 FDEM 107
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 113 bits (283), Expect = 5e-25, Method: Composition-based stats.
Identities = 61/176 (34%), Positives = 91/176 (51%), Gaps = 21/176 (11%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T + + Y +++ AR+ F + PE+ W AMI GY + +A++LFREMQ S
Sbjct: 358 TALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFS 417
Query: 80 RDEFTTVRIL---------------------TTFNNDIFVGIALIDMYCKCGDVEKAQRV 118
+ T IL T F + I+V ALI MY KCG + +A+R+
Sbjct: 418 PNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRL 477
Query: 119 FWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
F M +K++ TW MI G + G G AL++F +ML + I VT++ VL AC+H
Sbjct: 478 FDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSH 533
Score = 75.9 bits (185), Expect = 1e-13, Method: Composition-based stats.
Identities = 47/178 (26%), Positives = 83/178 (46%), Gaps = 24/178 (13%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM-QTSNI 78
+ IV Y +V+ AR+ F +MPE+D +LW MI GY + + E++ +FR++ S
Sbjct: 158 SNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCT 217
Query: 79 RRDEFTTVRILTT----------------------FNNDIFVGIALIDMYCKCGDVEKAQ 116
R D T + IL +++D +V I +Y KCG ++
Sbjct: 218 RLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHD-YVLTGFISLYSKCGKIKMGS 276
Query: 117 RVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
+F + + D + AMI G +G + +L +F +++ + RL T V ++ H
Sbjct: 277 ALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGH 334
Score = 67.0 bits (162), Expect = 6e-11, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T +S Y G++ + F + + D V + AMI GY +L+LF+E+ S R
Sbjct: 260 TGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAR 319
Query: 80 RDEFTTVRIL------------------TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWK 121
T V ++ + F + V AL +Y K ++E A+++F +
Sbjct: 320 LRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDE 379
Query: 122 MLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
K +W AMI G +G + A+ +F +M ++ + VT +LSAC
Sbjct: 380 SPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQ 432
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 113 bits (283), Expect = 5e-25, Method: Composition-based stats.
Identities = 63/175 (36%), Positives = 96/175 (54%), Gaps = 21/175 (12%)
Query: 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80
T+++ Y VD AR F ++ E V + AMI GY R NR EAL+LFREMQ ++
Sbjct: 169 TLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKP 228
Query: 81 DEFTTVRILTT---------------------FNNDIFVGIALIDMYCKCGDVEKAQRVF 119
+E T + +L++ F + V ALIDM+ KCG ++ A +F
Sbjct: 229 NEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIF 288
Query: 120 WKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174
KM KD W+AMIV A G + ++ MF +M +++ DE+T++G+L+AC+H
Sbjct: 289 EKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSH 343
Score = 71.2 bits (173), Expect = 3e-12, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 35 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT--- 91
AR F M E D V++ +M GY R E +LF E+ I D +T +L
Sbjct: 82 ARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV 141
Query: 92 ------------------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133
+++++V LI+MY +C DV+ A+ VF +++ + AM
Sbjct: 142 AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAM 201
Query: 134 IVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172
I G A + AL +F +M ++ +E+T + VLS+C
Sbjct: 202 ITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSC 240
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 20 TTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79
T ++ + G +D A F +M +D W+AMI Y + +++ +F M++ N++
Sbjct: 269 TALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQ 328
Query: 80 RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK 125
DE T F+G L++ G VE+ ++ F +M+ K
Sbjct: 329 PDEIT------------FLG--LLNACSHTGRVEEGRKYFSQMVSK 360
Score = 36.6 bits (83), Expect = 0.090, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 69/164 (42%), Gaps = 22/164 (13%)
Query: 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP----ERDYVLWTAMIDGYLR 59
A+ IF M+ KD +W+ ++ Y N G+ + + F +M + D + + +++
Sbjct: 284 AVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSH 343
Query: 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119
R E F +M + +F V + + +++D+ + G++E A
Sbjct: 344 TGRVEEGRKYFSQMVS------KFGIVPSIKHYG-------SMVDLLSRAGNLEDAYEFI 390
Query: 120 WKM-LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162
K+ + W ++ A S H + LD+ ++ LD+
Sbjct: 391 DKLPISPTPMLWRILLA--ACSSHNN--LDLAEKVSERIFELDD 430
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,011,182
Number of Sequences: 539616
Number of extensions: 2247031
Number of successful extensions: 10768
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 129
Number of HSP's that attempted gapping in prelim test: 7081
Number of HSP's gapped (non-prelim): 1990
length of query: 175
length of database: 191,569,459
effective HSP length: 110
effective length of query: 65
effective length of database: 132,211,699
effective search space: 8593760435
effective search space used: 8593760435
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (26.6 bits)