Query 045555
Match_columns 175
No_of_seqs 155 out of 1350
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 03:16:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045555.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045555hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 4.1E-37 8.8E-42 245.0 17.5 162 14-175 257-439 (697)
2 PLN03081 pentatricopeptide (PP 100.0 1.7E-35 3.7E-40 235.7 17.8 174 2-175 140-338 (697)
3 PLN03218 maturation of RBCL 1; 100.0 7.2E-35 1.6E-39 236.9 18.9 174 2-175 559-767 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 1.2E-34 2.7E-39 235.6 19.2 173 2-174 454-661 (1060)
5 PLN03077 Protein ECB2; Provisi 100.0 7.8E-35 1.7E-39 236.4 17.4 162 14-175 220-402 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 1.1E-33 2.3E-38 229.8 17.5 161 14-174 119-300 (857)
7 PF13041 PPR_2: PPR repeat fam 99.7 9.2E-18 2E-22 89.6 6.5 50 125-174 1-50 (50)
8 PF13041 PPR_2: PPR repeat fam 99.6 4.5E-15 9.8E-20 79.1 6.2 50 45-108 1-50 (50)
9 PRK11788 tetratricopeptide rep 99.5 7.9E-12 1.7E-16 93.9 16.4 61 17-77 108-171 (389)
10 PRK11788 tetratricopeptide rep 99.4 1.9E-11 4E-16 91.9 16.0 170 2-172 52-259 (389)
11 TIGR02917 PEP_TPR_lipo putativ 99.2 5.3E-10 1.2E-14 91.4 15.3 169 2-173 686-882 (899)
12 TIGR02917 PEP_TPR_lipo putativ 99.2 1.3E-09 2.9E-14 89.1 16.3 73 3-75 551-629 (899)
13 KOG4422 Uncharacterized conser 99.2 2.1E-09 4.6E-14 79.5 15.2 166 7-173 199-444 (625)
14 KOG4422 Uncharacterized conser 99.1 1.7E-09 3.6E-14 80.1 12.6 123 38-174 198-324 (625)
15 PF12854 PPR_1: PPR repeat 99.1 1E-10 2.2E-15 56.7 4.1 32 91-122 2-33 (34)
16 TIGR02521 type_IV_pilW type IV 99.1 2.2E-08 4.7E-13 69.4 16.4 142 2-156 48-198 (234)
17 PF12854 PPR_1: PPR repeat 99.0 4E-10 8.6E-15 54.6 3.6 32 123-154 3-34 (34)
18 TIGR00756 PPR pentatricopeptid 99.0 9.4E-10 2E-14 53.6 4.4 35 128-162 1-35 (35)
19 PF13429 TPR_15: Tetratricopep 98.9 3E-08 6.5E-13 71.6 12.2 153 3-172 95-258 (280)
20 TIGR00990 3a0801s09 mitochondr 98.9 8.2E-08 1.8E-12 76.6 14.3 153 2-156 311-496 (615)
21 PRK12370 invasion protein regu 98.9 1.9E-07 4.1E-12 73.7 16.1 140 2-156 321-470 (553)
22 PF13812 PPR_3: Pentatricopept 98.9 3.8E-09 8.3E-14 51.2 4.3 34 127-160 1-34 (34)
23 TIGR00756 PPR pentatricopeptid 98.9 4.4E-09 9.6E-14 51.2 3.9 35 48-82 1-35 (35)
24 KOG4318 Bicoid mRNA stability 98.9 7.7E-08 1.7E-12 76.8 12.6 156 13-172 22-281 (1088)
25 TIGR00990 3a0801s09 mitochondr 98.9 2.4E-07 5.3E-12 74.0 15.8 128 27-156 305-462 (615)
26 PRK15174 Vi polysaccharide exp 98.8 2.3E-07 5E-12 74.5 15.2 153 2-156 194-381 (656)
27 PRK10747 putative protoheme IX 98.8 6.3E-07 1.4E-11 67.9 16.7 169 2-172 135-371 (398)
28 PF13429 TPR_15: Tetratricopep 98.8 1.6E-08 3.5E-13 73.0 7.4 138 3-155 128-276 (280)
29 TIGR02521 type_IV_pilW type IV 98.8 4.4E-07 9.6E-12 62.8 14.4 139 2-155 82-231 (234)
30 PF13812 PPR_3: Pentatricopept 98.8 1.2E-08 2.6E-13 49.4 4.0 33 48-80 2-34 (34)
31 PRK12370 invasion protein regu 98.7 1.1E-06 2.3E-11 69.5 15.5 140 2-156 278-435 (553)
32 PRK15174 Vi polysaccharide exp 98.7 1.2E-06 2.7E-11 70.4 16.0 52 105-156 186-241 (656)
33 PF01535 PPR: PPR repeat; Int 98.7 2.5E-08 5.5E-13 47.1 3.5 31 128-158 1-31 (31)
34 PRK09782 bacteriophage N4 rece 98.7 7.7E-07 1.7E-11 74.1 13.7 152 2-155 526-705 (987)
35 KOG1155 Anaphase-promoting com 98.7 2.9E-06 6.3E-11 63.7 14.6 139 2-155 347-494 (559)
36 KOG1126 DNA-binding cell divis 98.7 1.2E-06 2.5E-11 68.1 12.9 148 15-168 420-596 (638)
37 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 1.5E-06 3.3E-11 65.2 13.3 123 17-154 170-295 (395)
38 KOG1155 Anaphase-promoting com 98.6 8.8E-07 1.9E-11 66.4 11.6 139 17-171 331-475 (559)
39 PF01535 PPR: PPR repeat; Int 98.6 5.2E-08 1.1E-12 46.0 3.4 31 48-78 1-31 (31)
40 KOG2003 TPR repeat-containing 98.6 6.6E-06 1.4E-10 62.0 15.8 169 2-173 507-705 (840)
41 PRK09782 bacteriophage N4 rece 98.6 2.3E-06 5E-11 71.3 14.9 153 2-156 493-672 (987)
42 PRK15359 type III secretion sy 98.6 3E-06 6.5E-11 55.2 12.6 104 38-156 15-121 (144)
43 PRK10049 pgaA outer membrane p 98.6 5.2E-06 1.1E-10 68.0 16.5 75 2-76 254-339 (765)
44 PRK11447 cellulose synthase su 98.6 3.5E-06 7.5E-11 71.9 15.4 143 2-160 590-745 (1157)
45 PRK14574 hmsH outer membrane p 98.6 5.3E-06 1.1E-10 68.0 15.7 153 2-172 51-213 (822)
46 COG2956 Predicted N-acetylgluc 98.6 1.8E-06 4E-11 62.1 11.5 76 2-77 52-137 (389)
47 PRK10747 putative protoheme IX 98.6 6.3E-06 1.4E-10 62.6 14.6 127 14-155 261-389 (398)
48 TIGR00540 hemY_coli hemY prote 98.5 2E-05 4.2E-10 60.1 17.2 171 2-172 135-380 (409)
49 COG3071 HemY Uncharacterized e 98.5 1.1E-05 2.3E-10 59.5 14.7 148 14-161 185-395 (400)
50 TIGR00540 hemY_coli hemY prote 98.5 1.9E-05 4.1E-10 60.2 16.0 154 2-155 170-398 (409)
51 KOG4626 O-linked N-acetylgluco 98.5 1.1E-06 2.4E-11 68.3 9.0 121 19-154 289-415 (966)
52 PF04733 Coatomer_E: Coatomer 98.5 4.1E-06 8.9E-11 60.8 11.4 57 98-154 203-263 (290)
53 KOG1126 DNA-binding cell divis 98.5 7.8E-06 1.7E-10 63.6 13.2 147 1-162 471-626 (638)
54 PRK11189 lipoprotein NlpI; Pro 98.5 3.5E-05 7.5E-10 56.3 15.9 158 3-167 82-275 (296)
55 PRK15359 type III secretion sy 98.5 9.4E-06 2E-10 52.8 11.6 103 7-124 15-120 (144)
56 PRK11447 cellulose synthase su 98.5 7.9E-06 1.7E-10 69.8 14.1 73 2-74 478-556 (1157)
57 PRK11189 lipoprotein NlpI; Pro 98.4 4.7E-05 1E-09 55.5 16.1 125 16-155 64-193 (296)
58 KOG4626 O-linked N-acetylgluco 98.4 7.8E-06 1.7E-10 63.8 11.9 157 2-162 303-489 (966)
59 COG2956 Predicted N-acetylgluc 98.4 3.4E-05 7.3E-10 55.8 14.1 161 1-161 85-283 (389)
60 PRK10049 pgaA outer membrane p 98.4 2E-05 4.2E-10 64.7 14.9 137 2-154 32-177 (765)
61 COG5010 TadD Flp pilus assembl 98.4 2.2E-05 4.8E-10 54.9 12.7 124 15-153 99-228 (257)
62 PRK10370 formate-dependent nit 98.4 2.1E-05 4.5E-10 54.0 12.5 104 46-165 72-181 (198)
63 PRK15179 Vi polysaccharide bio 98.4 3.2E-05 7E-10 62.4 15.2 127 15-156 85-217 (694)
64 PF09976 TPR_21: Tetratricopep 98.4 4.7E-05 1E-09 49.5 13.5 125 16-153 12-144 (145)
65 PF05843 Suf: Suppressor of fo 98.4 1.3E-05 2.9E-10 57.9 11.7 139 17-172 2-150 (280)
66 TIGR02552 LcrH_SycD type III s 98.4 3E-05 6.5E-10 49.6 12.1 108 46-170 16-126 (135)
67 KOG4318 Bicoid mRNA stability 98.4 8.5E-06 1.8E-10 65.6 11.1 127 44-171 22-248 (1088)
68 PF04733 Coatomer_E: Coatomer 98.3 3.6E-05 7.9E-10 55.9 13.5 136 19-170 105-243 (290)
69 KOG1070 rRNA processing protei 98.3 1.4E-05 3.1E-10 67.0 12.3 133 17-162 1531-1669(1710)
70 KOG1840 Kinesin light chain [C 98.3 1.2E-05 2.6E-10 62.2 11.0 143 3-155 266-437 (508)
71 COG3063 PilF Tfp pilus assembl 98.3 5.5E-05 1.2E-09 52.2 12.6 122 19-155 38-167 (250)
72 COG3063 PilF Tfp pilus assembl 98.3 0.00011 2.4E-09 50.8 13.9 151 3-167 53-212 (250)
73 TIGR03302 OM_YfiO outer membra 98.3 2.9E-05 6.4E-10 54.5 11.6 56 101-156 171-232 (235)
74 COG3071 HemY Uncharacterized e 98.3 0.00027 5.8E-09 52.4 16.2 157 15-173 152-372 (400)
75 COG5010 TadD Flp pilus assembl 98.2 0.00034 7.3E-09 49.1 14.7 131 15-161 66-202 (257)
76 PRK10370 formate-dependent nit 98.2 8.3E-05 1.8E-09 51.1 11.7 96 14-124 71-172 (198)
77 TIGR02552 LcrH_SycD type III s 98.2 8.9E-05 1.9E-09 47.4 11.3 95 15-124 16-113 (135)
78 COG4783 Putative Zn-dependent 98.2 0.00019 4.2E-09 54.4 14.2 124 3-155 324-453 (484)
79 cd00189 TPR Tetratricopeptide 98.1 8.2E-05 1.8E-09 43.4 10.1 93 49-156 2-97 (100)
80 PF10037 MRP-S27: Mitochondria 98.1 0.00011 2.3E-09 55.9 12.6 116 46-173 65-184 (429)
81 PRK14574 hmsH outer membrane p 98.1 0.00016 3.6E-09 59.5 14.4 157 2-162 309-483 (822)
82 PF08579 RPM2: Mitochondrial r 98.1 7.4E-05 1.6E-09 45.9 9.2 88 49-173 27-115 (120)
83 KOG1173 Anaphase-promoting com 98.1 0.00055 1.2E-08 53.0 15.8 156 15-172 311-532 (611)
84 cd05804 StaR_like StaR_like; a 98.0 0.00038 8.3E-09 51.8 13.9 113 29-156 93-215 (355)
85 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 7.7E-05 1.7E-09 56.3 9.6 106 2-122 186-294 (395)
86 PLN03088 SGT1, suppressor of 98.0 0.00021 4.6E-09 53.5 11.9 102 54-172 9-113 (356)
87 cd00189 TPR Tetratricopeptide 98.0 0.00011 2.4E-09 42.8 8.5 92 18-124 2-96 (100)
88 TIGR03302 OM_YfiO outer membra 98.0 0.0013 2.9E-08 46.1 15.2 131 14-156 31-195 (235)
89 KOG1129 TPR repeat-containing 98.0 0.00018 3.9E-09 52.4 10.6 131 15-160 222-357 (478)
90 PRK02603 photosystem I assembl 98.0 0.00041 8.9E-09 46.5 11.9 83 15-112 34-122 (172)
91 KOG1840 Kinesin light chain [C 98.0 0.00014 3.1E-09 56.5 10.4 142 2-154 307-477 (508)
92 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00073 1.6E-08 41.8 12.1 97 48-156 3-105 (119)
93 PF12895 Apc3: Anaphase-promot 97.9 0.00012 2.6E-09 43.0 7.5 80 60-152 2-83 (84)
94 PF12921 ATP13: Mitochondrial 97.9 0.00042 9.1E-09 44.0 9.8 77 96-172 2-98 (126)
95 PF12569 NARP1: NMDA receptor- 97.9 0.0018 3.8E-08 50.9 15.2 154 2-155 21-256 (517)
96 PRK15363 pathogenicity island 97.8 0.0013 2.7E-08 43.2 11.9 110 37-161 24-138 (157)
97 KOG2002 TPR-containing nuclear 97.8 0.00011 2.4E-09 59.9 8.3 139 3-156 548-709 (1018)
98 PF06239 ECSIT: Evolutionarily 97.8 0.00023 4.9E-09 48.9 8.6 103 6-122 35-165 (228)
99 PF10037 MRP-S27: Mitochondria 97.8 0.00022 4.8E-09 54.2 9.4 112 15-140 65-186 (429)
100 KOG2002 TPR-containing nuclear 97.8 8.8E-05 1.9E-09 60.4 7.6 139 14-167 598-756 (1018)
101 CHL00033 ycf3 photosystem I as 97.8 0.00088 1.9E-08 44.6 11.5 62 15-76 34-101 (168)
102 PRK15179 Vi polysaccharide bio 97.8 0.00091 2E-08 54.3 13.4 119 1-134 102-229 (694)
103 PF12895 Apc3: Anaphase-promot 97.8 2.5E-05 5.3E-10 45.9 3.1 77 29-121 2-83 (84)
104 KOG1129 TPR repeat-containing 97.8 0.00034 7.3E-09 51.0 9.2 138 3-155 241-386 (478)
105 PRK15363 pathogenicity island 97.7 0.00093 2E-08 43.8 9.8 96 13-123 32-130 (157)
106 KOG1128 Uncharacterized conser 97.7 0.00066 1.4E-08 54.0 10.6 148 3-155 416-615 (777)
107 KOG3081 Vesicle coat complex C 97.7 0.0015 3.2E-08 46.3 11.1 121 21-156 113-236 (299)
108 KOG1915 Cell cycle control pro 97.7 0.0021 4.5E-08 49.3 12.5 138 2-155 90-235 (677)
109 PF06239 ECSIT: Evolutionarily 97.7 0.0012 2.5E-08 45.5 10.2 111 35-174 33-150 (228)
110 PF14559 TPR_19: Tetratricopep 97.7 0.00048 1E-08 38.4 7.2 50 59-123 3-52 (68)
111 PF04840 Vps16_C: Vps16, C-ter 97.7 0.0034 7.4E-08 46.3 13.3 109 18-152 179-287 (319)
112 COG4783 Putative Zn-dependent 97.7 0.002 4.3E-08 49.2 12.0 116 25-155 315-436 (484)
113 PF14559 TPR_19: Tetratricopep 97.6 0.00032 6.8E-09 39.2 6.1 61 107-169 2-65 (68)
114 KOG2076 RNA polymerase III tra 97.6 0.0076 1.6E-07 49.2 15.5 153 2-169 156-326 (895)
115 PLN03088 SGT1, suppressor of 97.6 0.0015 3.3E-08 49.0 11.2 87 23-124 9-98 (356)
116 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0012 2.7E-08 40.8 9.2 96 17-124 3-104 (119)
117 PF12569 NARP1: NMDA receptor- 97.6 0.0058 1.3E-07 48.1 14.5 123 18-155 196-333 (517)
118 KOG1125 TPR repeat-containing 97.6 0.0053 1.2E-07 47.8 13.8 157 3-161 303-496 (579)
119 PF03704 BTAD: Bacterial trans 97.6 0.00071 1.5E-08 44.0 8.2 70 98-167 64-141 (146)
120 KOG2003 TPR repeat-containing 97.6 0.004 8.6E-08 47.6 12.8 143 29-174 503-671 (840)
121 PF09976 TPR_21: Tetratricopep 97.6 0.00076 1.6E-08 43.9 8.2 87 19-121 51-143 (145)
122 PF13432 TPR_16: Tetratricopep 97.6 0.00044 9.6E-09 38.3 6.2 55 102-156 3-60 (65)
123 KOG0547 Translocase of outer m 97.6 0.00091 2E-08 51.2 9.0 122 19-155 363-490 (606)
124 PF12921 ATP13: Mitochondrial 97.5 0.0013 2.7E-08 41.8 8.3 89 46-142 1-103 (126)
125 PRK02603 photosystem I assembl 97.5 0.0066 1.4E-07 40.6 12.3 98 46-155 34-148 (172)
126 PF08579 RPM2: Mitochondrial r 97.5 0.0008 1.7E-08 41.4 7.0 72 18-89 27-111 (120)
127 CHL00033 ycf3 photosystem I as 97.5 0.0078 1.7E-07 40.1 12.5 95 47-153 35-139 (168)
128 KOG3081 Vesicle coat complex C 97.5 0.016 3.6E-07 41.2 14.2 137 2-155 125-270 (299)
129 PF05843 Suf: Suppressor of fo 97.5 0.0019 4.1E-08 46.8 9.8 95 48-156 2-99 (280)
130 KOG4340 Uncharacterized conser 97.5 0.0016 3.4E-08 47.1 8.8 169 4-175 131-323 (459)
131 KOG2047 mRNA splicing factor [ 97.5 0.0056 1.2E-07 48.6 12.3 137 17-173 103-292 (835)
132 KOG0547 Translocase of outer m 97.5 0.0034 7.3E-08 48.2 10.9 120 27-155 439-565 (606)
133 PF12688 TPR_5: Tetratrico pep 97.5 0.0098 2.1E-07 37.4 11.5 105 53-173 7-117 (120)
134 KOG2076 RNA polymerase III tra 97.4 0.0087 1.9E-07 48.9 13.6 121 21-156 144-270 (895)
135 KOG0553 TPR repeat-containing 97.4 0.0041 8.9E-08 44.8 10.6 99 56-171 90-191 (304)
136 PF13424 TPR_12: Tetratricopep 97.4 0.00077 1.7E-08 38.7 5.6 60 96-155 5-74 (78)
137 KOG0495 HAT repeat protein [RN 97.4 0.024 5.3E-07 45.3 15.0 150 4-155 603-781 (913)
138 KOG1915 Cell cycle control pro 97.4 0.012 2.5E-07 45.3 12.7 140 2-156 383-536 (677)
139 PLN02789 farnesyltranstransfer 97.4 0.012 2.6E-07 43.6 12.6 129 17-160 38-175 (320)
140 PF13414 TPR_11: TPR repeat; P 97.3 0.00048 1E-08 38.6 4.2 62 15-76 2-67 (69)
141 PRK10153 DNA-binding transcrip 97.3 0.015 3.2E-07 45.9 13.6 137 14-165 335-489 (517)
142 KOG3785 Uncharacterized conser 97.3 0.0043 9.3E-08 46.0 9.8 53 101-153 398-454 (557)
143 PF13414 TPR_11: TPR repeat; P 97.3 0.0013 2.9E-08 36.7 5.9 56 99-154 6-65 (69)
144 KOG1070 rRNA processing protei 97.3 0.0079 1.7E-07 51.6 11.9 127 14-156 1455-1593(1710)
145 KOG1125 TPR repeat-containing 97.2 0.0046 9.9E-08 48.1 9.6 121 14-149 428-564 (579)
146 PRK10803 tol-pal system protei 97.2 0.009 1.9E-07 42.9 10.7 100 49-162 145-250 (263)
147 PF13432 TPR_16: Tetratricopep 97.2 0.0032 6.9E-08 34.7 6.8 57 53-124 3-59 (65)
148 KOG0985 Vesicle coat protein c 97.2 0.025 5.4E-07 47.5 14.0 135 15-173 1103-1260(1666)
149 PF14938 SNAP: Soluble NSF att 97.2 0.0073 1.6E-07 43.8 10.2 145 18-173 77-246 (282)
150 cd05804 StaR_like StaR_like; a 97.2 0.012 2.6E-07 43.9 11.7 96 16-123 114-213 (355)
151 PF03704 BTAD: Bacterial trans 97.2 0.0015 3.3E-08 42.4 5.8 69 17-85 63-139 (146)
152 KOG3616 Selective LIM binding 97.2 0.0023 5E-08 51.6 7.6 101 28-151 744-848 (1636)
153 PF13424 TPR_12: Tetratricopep 97.1 0.00098 2.1E-08 38.3 4.2 60 16-75 5-74 (78)
154 PRK14720 transcript cleavage f 97.1 0.023 4.9E-07 47.5 13.2 140 14-156 29-178 (906)
155 PF13371 TPR_9: Tetratricopept 97.1 0.0058 1.3E-07 34.5 7.3 62 103-166 2-66 (73)
156 KOG2047 mRNA splicing factor [ 97.1 0.038 8.2E-07 44.1 13.5 58 97-154 388-452 (835)
157 KOG1174 Anaphase-promoting com 97.1 0.04 8.6E-07 41.8 13.0 141 15-156 333-500 (564)
158 PF12688 TPR_5: Tetratrico pep 97.1 0.019 4.2E-07 36.1 10.0 105 22-138 7-117 (120)
159 KOG1173 Anaphase-promoting com 97.1 0.0064 1.4E-07 47.4 9.0 119 4-137 399-532 (611)
160 KOG0553 TPR repeat-containing 97.1 0.0079 1.7E-07 43.3 8.9 96 25-135 90-190 (304)
161 PF14938 SNAP: Soluble NSF att 97.1 0.0057 1.2E-07 44.4 8.5 131 17-157 36-185 (282)
162 PF04840 Vps16_C: Vps16, C-ter 97.1 0.034 7.3E-07 41.2 12.4 107 3-137 195-301 (319)
163 PLN02789 farnesyltranstransfer 97.0 0.052 1.1E-06 40.2 12.7 155 3-173 90-266 (320)
164 KOG0495 HAT repeat protein [RN 97.0 0.1 2.2E-06 42.0 14.5 63 92-154 813-878 (913)
165 KOG3785 Uncharacterized conser 96.9 0.014 3.1E-07 43.3 9.3 141 2-156 302-490 (557)
166 KOG3616 Selective LIM binding 96.9 0.0097 2.1E-07 48.2 8.7 146 2-154 749-909 (1636)
167 KOG2376 Signal recognition par 96.9 0.11 2.5E-06 41.0 14.0 154 4-174 326-504 (652)
168 KOG2796 Uncharacterized conser 96.8 0.032 6.8E-07 39.9 10.1 142 16-168 177-325 (366)
169 KOG3060 Uncharacterized conser 96.8 0.089 1.9E-06 37.4 12.1 139 17-156 53-220 (289)
170 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.047 1E-06 41.9 11.2 68 46-125 74-141 (453)
171 KOG4340 Uncharacterized conser 96.7 0.019 4.1E-07 41.8 8.5 146 15-161 43-212 (459)
172 PRK10803 tol-pal system protei 96.7 0.03 6.5E-07 40.3 9.6 96 17-124 144-245 (263)
173 COG4700 Uncharacterized protei 96.7 0.097 2.1E-06 35.6 13.3 128 14-154 87-220 (251)
174 KOG1156 N-terminal acetyltrans 96.7 0.14 3E-06 40.9 13.5 159 3-171 59-261 (700)
175 PRK10866 outer membrane biogen 96.6 0.14 3E-06 36.4 14.2 65 15-79 31-101 (243)
176 PF13371 TPR_9: Tetratricopept 96.6 0.0066 1.4E-07 34.2 4.7 55 23-77 2-59 (73)
177 COG1729 Uncharacterized protei 96.6 0.038 8.1E-07 39.4 9.2 91 49-156 144-244 (262)
178 PF13525 YfiO: Outer membrane 96.6 0.13 2.9E-06 35.4 12.7 136 17-156 6-170 (203)
179 KOG1127 TPR repeat-containing 96.6 0.045 9.7E-07 45.8 10.5 139 17-155 493-658 (1238)
180 PRK14720 transcript cleavage f 96.6 0.1 2.2E-06 43.8 12.7 121 17-138 117-268 (906)
181 KOG1914 mRNA cleavage and poly 96.6 0.26 5.6E-06 38.8 13.9 122 18-155 368-500 (656)
182 KOG3941 Intermediate in Toll s 96.5 0.092 2E-06 38.0 10.8 112 34-174 52-170 (406)
183 PRK15331 chaperone protein Sic 96.5 0.056 1.2E-06 35.8 8.9 92 50-156 40-134 (165)
184 COG3629 DnrI DNA-binding trans 96.5 0.054 1.2E-06 39.2 9.5 76 96-171 153-236 (280)
185 PRK10153 DNA-binding transcrip 96.5 0.081 1.8E-06 41.9 11.2 113 2-130 359-489 (517)
186 COG5107 RNA14 Pre-mRNA 3'-end 96.5 0.12 2.5E-06 39.9 11.4 122 48-171 398-544 (660)
187 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.029 6.2E-07 43.0 8.3 63 94-156 73-141 (453)
188 KOG2376 Signal recognition par 96.3 0.081 1.8E-06 41.8 9.9 119 19-157 15-140 (652)
189 KOG3060 Uncharacterized conser 96.2 0.26 5.6E-06 35.1 14.1 123 2-139 103-234 (289)
190 KOG1156 N-terminal acetyltrans 96.2 0.36 7.7E-06 38.8 13.3 64 93-156 366-434 (700)
191 PRK15331 chaperone protein Sic 96.2 0.1 2.2E-06 34.6 8.7 93 17-125 38-134 (165)
192 KOG2053 Mitochondrial inherita 96.1 0.16 3.5E-06 42.0 11.1 103 28-146 21-129 (932)
193 KOG1174 Anaphase-promoting com 96.1 0.47 1E-05 36.4 12.9 140 14-154 230-395 (564)
194 COG4235 Cytochrome c biogenesi 96.0 0.25 5.4E-06 35.9 10.8 30 46-75 155-184 (287)
195 KOG3941 Intermediate in Toll s 96.0 0.064 1.4E-06 38.8 7.8 103 6-122 55-185 (406)
196 KOG1127 TPR repeat-containing 96.0 0.14 3.1E-06 43.0 10.3 116 30-162 472-629 (1238)
197 COG5107 RNA14 Pre-mRNA 3'-end 95.7 0.69 1.5E-05 35.9 12.8 73 6-78 30-107 (660)
198 PF13281 DUF4071: Domain of un 95.7 0.63 1.4E-05 35.3 15.4 144 17-161 142-338 (374)
199 COG4235 Cytochrome c biogenesi 95.7 0.52 1.1E-05 34.3 11.4 106 15-135 155-268 (287)
200 KOG4162 Predicted calmodulin-b 95.7 0.45 9.7E-06 38.9 12.0 123 18-155 652-782 (799)
201 PF10300 DUF3808: Protein of u 95.7 0.77 1.7E-05 36.1 14.1 137 19-171 191-348 (468)
202 PF13176 TPR_7: Tetratricopept 95.7 0.035 7.7E-07 26.7 4.0 26 129-154 1-26 (36)
203 PF09205 DUF1955: Domain of un 95.5 0.37 8E-06 30.9 9.7 131 26-159 12-152 (161)
204 PF10300 DUF3808: Protein of u 95.5 0.23 5.1E-06 38.9 9.7 106 2-122 250-373 (468)
205 KOG0543 FKBP-type peptidyl-pro 95.4 0.34 7.5E-06 36.6 10.0 119 22-155 214-354 (397)
206 smart00299 CLH Clathrin heavy 95.4 0.4 8.7E-06 30.7 10.6 122 19-172 10-135 (140)
207 KOG3617 WD40 and TPR repeat-co 95.3 1.5 3.2E-05 36.9 14.3 144 2-154 817-994 (1416)
208 KOG2053 Mitochondrial inherita 95.3 1.5 3.2E-05 36.7 16.1 73 3-76 27-106 (932)
209 PF13176 TPR_7: Tetratricopept 95.2 0.057 1.2E-06 25.9 3.7 26 49-74 1-26 (36)
210 KOG4162 Predicted calmodulin-b 95.1 1.3 2.8E-05 36.5 12.6 140 14-155 321-541 (799)
211 KOG0985 Vesicle coat protein c 95.1 2 4.3E-05 37.0 14.3 152 14-174 982-1178(1666)
212 KOG0624 dsRNA-activated protei 94.9 1.2 2.5E-05 33.5 11.4 141 14-156 187-370 (504)
213 PRK04841 transcriptional regul 94.9 0.46 1E-05 40.2 10.6 127 18-155 493-640 (903)
214 KOG1914 mRNA cleavage and poly 94.9 1.5 3.2E-05 34.9 12.1 136 2-150 383-533 (656)
215 PRK10866 outer membrane biogen 94.9 0.94 2E-05 32.2 12.8 82 45-138 30-115 (243)
216 COG3629 DnrI DNA-binding trans 94.8 0.3 6.6E-06 35.4 7.9 70 16-85 153-230 (280)
217 PF13512 TPR_18: Tetratricopep 94.7 0.61 1.3E-05 30.2 8.4 61 95-156 10-76 (142)
218 KOG1128 Uncharacterized conser 94.7 0.75 1.6E-05 37.6 10.5 63 21-90 403-465 (777)
219 KOG2041 WD40 repeat protein [G 94.7 0.61 1.3E-05 38.1 10.0 143 1-153 750-904 (1189)
220 KOG3617 WD40 and TPR repeat-co 94.7 0.63 1.4E-05 38.8 10.1 117 14-153 755-884 (1416)
221 PF13428 TPR_14: Tetratricopep 94.6 0.18 3.9E-06 25.3 4.9 28 129-156 3-30 (44)
222 PF10602 RPN7: 26S proteasome 94.6 0.88 1.9E-05 30.7 10.4 93 48-154 37-140 (177)
223 PF04184 ST7: ST7 protein; In 94.1 2.2 4.8E-05 33.6 11.5 75 49-136 261-340 (539)
224 PF10602 RPN7: 26S proteasome 94.0 0.98 2.1E-05 30.5 8.7 99 16-123 36-140 (177)
225 PF07079 DUF1347: Protein of u 94.0 0.66 1.4E-05 35.9 8.4 135 2-139 23-179 (549)
226 COG1729 Uncharacterized protei 93.9 0.84 1.8E-05 32.8 8.5 94 18-124 144-243 (262)
227 KOG1920 IkappaB kinase complex 93.8 1.1 2.4E-05 38.7 10.1 104 28-154 920-1026(1265)
228 KOG0548 Molecular co-chaperone 93.8 1.3 2.7E-05 34.9 9.8 134 22-172 304-469 (539)
229 PF04053 Coatomer_WDAD: Coatom 93.7 1.7 3.8E-05 33.9 10.6 111 17-152 296-427 (443)
230 PF07035 Mic1: Colon cancer-as 93.7 1.4 3E-05 29.5 14.4 125 12-157 25-150 (167)
231 PF13374 TPR_10: Tetratricopep 93.5 0.23 4.9E-06 24.2 4.0 28 128-155 3-30 (42)
232 PF13428 TPR_14: Tetratricopep 93.5 0.23 5.1E-06 24.9 4.0 36 98-133 3-41 (44)
233 KOG0548 Molecular co-chaperone 93.5 0.76 1.6E-05 36.1 8.1 99 24-137 10-114 (539)
234 PF07079 DUF1347: Protein of u 93.4 1.5 3.3E-05 34.1 9.5 131 26-174 16-179 (549)
235 PRK04841 transcriptional regul 93.4 4.4 9.5E-05 34.5 13.7 125 22-155 458-601 (903)
236 KOG0624 dsRNA-activated protei 93.1 2.9 6.4E-05 31.5 12.0 122 24-162 114-256 (504)
237 PF13512 TPR_18: Tetratricopep 93.0 1.6 3.5E-05 28.3 9.2 66 20-85 14-85 (142)
238 PF00637 Clathrin: Region in C 92.9 0.055 1.2E-06 34.9 1.3 108 52-173 12-136 (143)
239 KOG2280 Vacuolar assembly/sort 92.9 1.4 3E-05 36.3 9.0 109 18-151 686-794 (829)
240 smart00299 CLH Clathrin heavy 92.7 1.7 3.7E-05 27.8 12.8 96 15-138 40-136 (140)
241 PF13374 TPR_10: Tetratricopep 92.7 0.37 8E-06 23.4 4.0 29 47-75 2-30 (42)
242 COG4649 Uncharacterized protei 92.6 2.3 4.9E-05 28.8 11.3 133 18-162 61-202 (221)
243 PF00637 Clathrin: Region in C 92.5 0.023 4.9E-07 36.7 -0.9 56 15-73 41-96 (143)
244 PF00515 TPR_1: Tetratricopept 92.5 0.48 1.1E-05 21.9 4.1 28 128-155 2-29 (34)
245 PF00515 TPR_1: Tetratricopept 92.4 0.4 8.8E-06 22.2 3.7 27 49-75 3-29 (34)
246 TIGR03504 FimV_Cterm FimV C-te 92.3 0.51 1.1E-05 23.9 4.1 28 133-160 5-32 (44)
247 KOG0543 FKBP-type peptidyl-pro 92.3 1.6 3.5E-05 33.2 8.3 94 16-124 257-354 (397)
248 KOG1538 Uncharacterized conser 92.3 0.72 1.6E-05 37.4 6.7 113 22-157 709-847 (1081)
249 KOG4555 TPR repeat-containing 92.1 2.2 4.7E-05 27.5 8.3 89 55-158 51-146 (175)
250 COG4105 ComL DNA uptake lipopr 92.0 3.4 7.4E-05 29.6 14.2 137 18-155 37-232 (254)
251 KOG1538 Uncharacterized conser 91.9 1.6 3.4E-05 35.6 8.1 98 14-122 745-843 (1081)
252 PF04053 Coatomer_WDAD: Coatom 91.8 4.1 8.9E-05 31.9 10.3 83 14-121 345-427 (443)
253 PF13762 MNE1: Mitochondrial s 91.6 2.6 5.6E-05 27.5 10.6 77 98-174 41-127 (145)
254 TIGR02508 type_III_yscG type I 91.4 2.1 4.6E-05 26.0 8.8 62 102-166 45-106 (115)
255 PF07719 TPR_2: Tetratricopept 90.9 0.88 1.9E-05 20.9 4.1 27 129-155 3-29 (34)
256 PF13525 YfiO: Outer membrane 90.9 3.9 8.4E-05 28.2 10.5 95 50-156 8-119 (203)
257 COG3118 Thioredoxin domain-con 90.8 5.2 0.00011 29.4 12.2 52 96-147 236-292 (304)
258 PF13281 DUF4071: Domain of un 90.7 6.1 0.00013 30.1 10.0 69 101-169 146-224 (374)
259 TIGR02561 HrpB1_HrpK type III 90.5 3.5 7.6E-05 27.0 10.9 89 58-161 21-111 (153)
260 PRK10564 maltose regulon perip 90.3 0.89 1.9E-05 33.3 5.1 43 129-171 259-301 (303)
261 cd00923 Cyt_c_Oxidase_Va Cytoc 90.2 2.7 5.8E-05 25.4 6.2 60 62-135 22-84 (103)
262 KOG0991 Replication factor C, 89.9 5.6 0.00012 28.5 11.0 140 21-164 135-275 (333)
263 PF09205 DUF1955: Domain of un 89.9 3.5 7.6E-05 26.6 6.9 64 15-78 85-151 (161)
264 KOG4555 TPR repeat-containing 89.6 4 8.6E-05 26.4 8.1 88 24-123 51-142 (175)
265 COG4455 ImpE Protein of avirul 89.6 3.7 7.9E-05 29.0 7.4 72 100-171 5-81 (273)
266 PF07721 TPR_4: Tetratricopept 89.4 0.85 1.8E-05 19.9 3.0 21 20-40 5-25 (26)
267 PF13431 TPR_17: Tetratricopep 89.4 0.66 1.4E-05 21.9 2.8 20 96-115 13-32 (34)
268 PF02284 COX5A: Cytochrome c o 89.3 3.4 7.4E-05 25.2 7.1 57 65-135 28-87 (108)
269 PF09613 HrpB1_HrpK: Bacterial 89.3 4.7 0.0001 26.8 8.0 48 107-156 21-73 (160)
270 COG4455 ImpE Protein of avirul 89.0 4.2 9E-05 28.7 7.3 59 49-122 3-61 (273)
271 PF13174 TPR_6: Tetratricopept 88.9 0.93 2E-05 20.6 3.1 25 132-156 5-29 (33)
272 PF13181 TPR_8: Tetratricopept 88.8 1.5 3.2E-05 20.2 4.1 27 129-155 3-29 (34)
273 TIGR02561 HrpB1_HrpK type III 88.7 5.1 0.00011 26.3 7.2 49 107-157 21-74 (153)
274 KOG2041 WD40 repeat protein [G 88.4 8.7 0.00019 32.0 9.6 83 14-121 690-785 (1189)
275 PF02259 FAT: FAT domain; Int 88.3 8.6 0.00019 28.5 13.2 138 15-155 30-212 (352)
276 KOG2280 Vacuolar assembly/sort 88.3 3.7 8.1E-05 33.9 7.6 93 3-120 702-794 (829)
277 TIGR03504 FimV_Cterm FimV C-te 88.2 1.1 2.4E-05 22.7 3.2 26 52-77 4-29 (44)
278 COG4700 Uncharacterized protei 88.0 6.8 0.00015 27.0 14.1 103 45-161 87-194 (251)
279 COG3118 Thioredoxin domain-con 88.0 8.7 0.00019 28.2 11.1 121 22-156 140-265 (304)
280 PF11848 DUF3368: Domain of un 87.4 2.7 5.8E-05 21.7 5.1 35 137-171 12-46 (48)
281 KOG2066 Vacuolar assembly/sort 87.4 8.5 0.00018 32.1 9.1 46 17-62 393-438 (846)
282 KOG4648 Uncharacterized conser 87.1 2.2 4.7E-05 32.1 5.4 52 23-74 104-158 (536)
283 PF11663 Toxin_YhaV: Toxin wit 86.8 0.99 2.2E-05 28.9 3.1 34 138-173 106-139 (140)
284 PF09613 HrpB1_HrpK: Bacterial 86.7 7.3 0.00016 25.9 12.6 53 57-124 20-72 (160)
285 PF13170 DUF4003: Protein of u 86.3 11 0.00025 27.8 9.7 23 63-85 78-100 (297)
286 KOG1585 Protein required for f 86.0 11 0.00023 27.2 10.2 52 98-150 192-250 (308)
287 PF14689 SPOB_a: Sensor_kinase 85.7 2.4 5.3E-05 23.1 4.0 45 111-155 5-51 (62)
288 TIGR02508 type_III_yscG type I 84.8 6.8 0.00015 23.9 7.3 81 2-85 22-105 (115)
289 COG4105 ComL DNA uptake lipopr 84.7 13 0.00027 26.8 8.7 75 96-172 35-116 (254)
290 PF11207 DUF2989: Protein of u 84.6 11 0.00024 26.1 8.3 40 108-147 152-198 (203)
291 KOG0550 Molecular chaperone (D 84.1 13 0.00029 28.8 8.3 118 28-156 215-350 (486)
292 KOG1920 IkappaB kinase complex 83.8 26 0.00055 31.0 10.5 21 102-122 1032-1052(1265)
293 PRK09687 putative lyase; Provi 83.4 15 0.00033 26.8 17.3 166 3-175 90-280 (280)
294 KOG4234 TPR repeat-containing 83.1 13 0.00029 26.0 8.6 93 54-156 102-197 (271)
295 KOG1130 Predicted G-alpha GTPa 83.0 0.88 1.9E-05 35.0 1.9 129 17-154 196-342 (639)
296 KOG2796 Uncharacterized conser 83.0 16 0.00035 26.7 11.3 124 19-156 139-281 (366)
297 PRK11906 transcriptional regul 82.9 21 0.00046 28.1 9.7 97 14-124 336-435 (458)
298 smart00028 TPR Tetratricopepti 82.7 2.8 6.1E-05 17.8 3.2 27 129-155 3-29 (34)
299 COG3898 Uncharacterized membra 82.4 21 0.00045 27.7 12.3 83 49-131 190-300 (531)
300 PF11207 DUF2989: Protein of u 82.3 14 0.0003 25.6 8.4 79 26-116 117-198 (203)
301 KOG0276 Vesicle coat complex C 82.0 16 0.00034 29.9 8.3 59 18-76 616-695 (794)
302 PF10366 Vps39_1: Vacuolar sor 81.8 8.6 0.00019 23.7 5.7 55 20-75 3-67 (108)
303 KOG2610 Uncharacterized conser 81.7 21 0.00045 27.1 11.4 126 15-155 136-276 (491)
304 KOG2908 26S proteasome regulat 81.7 20 0.00044 27.0 8.8 65 100-164 79-157 (380)
305 PF10475 DUF2450: Protein of u 81.1 19 0.00042 26.4 8.6 52 23-76 105-156 (291)
306 PF13762 MNE1: Mitochondrial s 80.9 13 0.00028 24.3 7.4 72 17-88 40-121 (145)
307 PRK10564 maltose regulon perip 80.9 4.5 9.7E-05 29.8 4.8 40 47-86 257-296 (303)
308 KOG4234 TPR repeat-containing 80.7 9.1 0.0002 26.7 5.9 90 23-127 102-199 (271)
309 PF14669 Asp_Glu_race_2: Putat 80.7 3.6 7.8E-05 28.3 3.9 71 51-121 136-206 (233)
310 KOG4570 Uncharacterized conser 80.6 12 0.00027 27.9 6.9 94 15-124 63-163 (418)
311 PF08311 Mad3_BUB1_I: Mad3/BUB 80.5 12 0.00026 23.7 8.7 57 50-121 68-124 (126)
312 PF14669 Asp_Glu_race_2: Putat 80.3 17 0.00036 25.2 11.8 55 98-152 134-206 (233)
313 KOG2114 Vacuolar assembly/sort 80.1 36 0.00079 29.0 11.2 81 26-123 378-458 (933)
314 PF11846 DUF3366: Domain of un 78.7 18 0.00039 24.6 7.3 53 103-155 115-172 (193)
315 PF13170 DUF4003: Protein of u 77.9 14 0.0003 27.3 6.6 82 2-85 120-220 (297)
316 PF13929 mRNA_stabil: mRNA sta 77.8 25 0.00055 25.9 12.9 78 93-170 199-286 (292)
317 PF10366 Vps39_1: Vacuolar sor 77.2 14 0.00031 22.7 5.8 28 128-155 40-67 (108)
318 KOG1941 Acetylcholine receptor 77.2 14 0.0003 28.3 6.4 126 21-153 127-272 (518)
319 PF04184 ST7: ST7 protein; In 77.1 36 0.00078 27.2 11.7 96 60-155 213-323 (539)
320 PF09454 Vps23_core: Vps23 cor 76.8 8 0.00017 21.4 4.0 32 94-125 6-37 (65)
321 PF10579 Rapsyn_N: Rapsyn N-te 75.8 6.9 0.00015 22.6 3.6 47 103-150 14-66 (80)
322 COG2976 Uncharacterized protei 75.8 24 0.00051 24.5 11.5 92 54-157 96-189 (207)
323 KOG4648 Uncharacterized conser 75.8 28 0.00061 26.5 7.6 91 55-162 105-198 (536)
324 COG3898 Uncharacterized membra 75.1 37 0.0008 26.4 13.8 67 97-165 189-299 (531)
325 PF07575 Nucleopor_Nup85: Nup8 75.0 3.6 7.8E-05 33.2 3.2 64 14-77 403-468 (566)
326 PF11846 DUF3366: Domain of un 74.9 13 0.00028 25.3 5.6 56 21-76 113-173 (193)
327 PLN03025 replication factor C 74.8 32 0.00069 25.5 11.1 99 64-164 161-261 (319)
328 COG5108 RPO41 Mitochondrial DN 74.6 26 0.00055 29.3 7.6 72 101-172 33-113 (1117)
329 COG2178 Predicted RNA-binding 73.7 27 0.00058 24.1 7.5 102 15-123 28-148 (204)
330 PF08311 Mad3_BUB1_I: Mad3/BUB 72.8 9 0.00019 24.3 4.1 68 3-72 51-124 (126)
331 PF11848 DUF3368: Domain of un 72.6 11 0.00024 19.3 4.5 34 56-89 11-44 (48)
332 KOG0550 Molecular chaperone (D 72.6 27 0.00059 27.2 7.0 58 19-76 252-316 (486)
333 PRK11906 transcriptional regul 72.2 47 0.001 26.3 13.2 135 2-152 275-432 (458)
334 PF11663 Toxin_YhaV: Toxin wit 72.1 3.2 6.9E-05 26.7 1.8 27 56-82 104-130 (140)
335 KOG2114 Vacuolar assembly/sort 71.4 43 0.00093 28.6 8.3 55 100-154 709-763 (933)
336 COG3947 Response regulator con 70.6 34 0.00073 25.5 6.8 67 98-164 281-355 (361)
337 PF10579 Rapsyn_N: Rapsyn N-te 70.5 18 0.0004 20.9 5.1 49 59-119 18-66 (80)
338 PRK15180 Vi polysaccharide bio 69.8 27 0.00059 27.9 6.6 92 16-123 323-418 (831)
339 cd08326 CARD_CASP9 Caspase act 68.9 13 0.00029 21.7 3.9 41 26-66 40-80 (84)
340 COG3947 Response regulator con 68.9 25 0.00055 26.1 5.9 58 18-75 281-341 (361)
341 PF11768 DUF3312: Protein of u 68.4 62 0.0013 26.2 8.4 62 19-80 411-477 (545)
342 KOG1258 mRNA processing protei 68.1 65 0.0014 26.3 10.1 126 15-155 44-179 (577)
343 KOG2300 Uncharacterized conser 67.6 63 0.0014 26.0 12.6 117 27-155 334-473 (629)
344 PF02847 MA3: MA3 domain; Int 67.1 26 0.00056 21.3 5.5 61 100-160 6-70 (113)
345 PF11817 Foie-gras_1: Foie gra 67.0 22 0.00049 25.3 5.5 54 101-154 183-245 (247)
346 PF10255 Paf67: RNA polymerase 66.7 59 0.0013 25.3 9.2 105 46-154 74-191 (404)
347 PF07163 Pex26: Pex26 protein; 65.9 52 0.0011 24.3 9.5 81 54-150 90-181 (309)
348 COG2976 Uncharacterized protei 65.9 42 0.00091 23.3 6.8 56 22-77 132-189 (207)
349 PF10255 Paf67: RNA polymerase 65.8 24 0.00053 27.3 5.7 59 17-75 123-192 (404)
350 PF14853 Fis1_TPR_C: Fis1 C-te 65.6 18 0.0004 19.0 4.7 31 135-167 9-39 (53)
351 KOG0276 Vesicle coat complex C 65.1 79 0.0017 26.2 8.9 84 14-122 664-747 (794)
352 COG5159 RPN6 26S proteasome re 63.7 59 0.0013 24.2 8.3 63 52-121 8-70 (421)
353 KOG1585 Protein required for f 62.2 58 0.0013 23.7 9.4 75 98-172 152-238 (308)
354 cd00280 TRFH Telomeric Repeat 62.0 49 0.0011 22.8 8.2 53 63-124 85-139 (200)
355 PF06552 TOM20_plant: Plant sp 62.0 48 0.001 22.7 8.3 29 144-174 97-125 (186)
356 KOG2908 26S proteasome regulat 61.9 69 0.0015 24.4 8.6 63 20-82 79-155 (380)
357 PF02284 COX5A: Cytochrome c o 61.3 36 0.00078 20.9 8.5 69 101-170 13-87 (108)
358 PF11817 Foie-gras_1: Foie gra 61.1 58 0.0013 23.2 8.3 80 34-122 163-244 (247)
359 KOG1464 COP9 signalosome, subu 60.5 64 0.0014 23.9 6.6 120 28-156 39-174 (440)
360 KOG1130 Predicted G-alpha GTPa 60.2 22 0.00047 27.8 4.5 56 55-121 25-80 (639)
361 PF13646 HEAT_2: HEAT repeats; 59.2 31 0.00067 19.5 7.7 70 7-77 4-74 (88)
362 PRK14963 DNA polymerase III su 58.9 95 0.0021 25.0 11.6 98 64-162 178-276 (504)
363 PF07035 Mic1: Colon cancer-as 58.7 53 0.0011 22.1 12.0 93 41-153 23-115 (167)
364 cd00923 Cyt_c_Oxidase_Va Cytoc 57.6 41 0.00089 20.5 8.5 59 111-170 22-84 (103)
365 PF13929 mRNA_stabil: mRNA sta 57.5 76 0.0016 23.5 10.3 107 2-122 145-264 (292)
366 KOG0403 Neoplastic transformat 57.3 98 0.0021 24.7 8.4 42 98-139 545-586 (645)
367 PF13934 ELYS: Nuclear pore co 57.1 67 0.0014 22.7 9.7 21 102-122 114-134 (226)
368 KOG4570 Uncharacterized conser 56.9 84 0.0018 23.8 8.9 96 46-157 63-165 (418)
369 KOG3807 Predicted membrane pro 56.8 75 0.0016 24.3 6.6 48 107-154 286-338 (556)
370 cd08819 CARD_MDA5_2 Caspase ac 56.0 41 0.00089 19.9 7.1 41 107-148 47-87 (88)
371 KOG3036 Protein involved in ce 55.2 79 0.0017 23.0 8.3 56 103-158 203-263 (293)
372 COG4003 Uncharacterized protei 55.2 29 0.00062 20.3 3.4 32 126-157 29-61 (98)
373 PF12554 MOZART1: Mitotic-spin 54.7 29 0.00062 18.0 3.1 28 135-162 12-39 (48)
374 PF02847 MA3: MA3 domain; Int 54.4 47 0.001 20.1 5.7 60 19-78 5-68 (113)
375 PF04090 RNA_pol_I_TF: RNA pol 54.2 71 0.0015 22.2 6.7 58 97-154 42-103 (199)
376 smart00777 Mad3_BUB1_I Mad3/BU 54.1 45 0.00098 21.2 4.6 39 33-71 80-123 (125)
377 PF14162 YozD: YozD-like prote 53.8 32 0.00069 18.0 3.7 28 145-172 13-48 (57)
378 KOG2034 Vacuolar sorting prote 53.5 1.5E+02 0.0033 25.7 11.7 24 129-152 532-555 (911)
379 cd07153 Fur_like Ferric uptake 53.3 47 0.001 20.3 4.7 32 134-165 7-38 (116)
380 KOG0403 Neoplastic transformat 53.3 1.2E+02 0.0025 24.3 14.3 59 99-157 512-573 (645)
381 PF02607 B12-binding_2: B12 bi 53.0 40 0.00087 18.9 4.9 32 139-170 13-44 (79)
382 PF01335 DED: Death effector d 52.7 44 0.00095 19.3 5.3 41 64-120 37-78 (84)
383 PF08631 SPO22: Meiosis protei 52.0 90 0.0019 22.7 14.3 121 27-156 4-150 (278)
384 KOG1147 Glutamyl-tRNA syntheta 51.8 12 0.00027 30.0 2.2 69 69-155 255-331 (712)
385 TIGR01914 cas_Csa4 CRISPR-asso 51.8 1E+02 0.0022 23.3 7.1 67 106-173 286-352 (354)
386 cd08323 CARD_APAF1 Caspase act 51.7 38 0.00083 19.9 3.8 60 7-66 19-78 (86)
387 PF13934 ELYS: Nuclear pore co 51.6 84 0.0018 22.2 11.0 124 18-162 78-204 (226)
388 PF04910 Tcf25: Transcriptiona 51.3 1.1E+02 0.0024 23.4 12.0 109 61-172 8-148 (360)
389 smart00031 DED Death effector 51.3 46 0.00099 19.1 4.8 60 44-119 16-78 (79)
390 PF11838 ERAP1_C: ERAP1-like C 51.3 95 0.0021 22.8 10.0 80 3-82 148-237 (324)
391 smart00777 Mad3_BUB1_I Mad3/BU 51.1 62 0.0013 20.6 7.6 45 64-121 80-124 (125)
392 PRK07452 DNA polymerase III su 50.8 1E+02 0.0022 22.9 10.7 91 69-164 139-236 (326)
393 KOG1586 Protein required for f 50.6 94 0.002 22.5 11.2 25 137-161 164-188 (288)
394 PF06552 TOM20_plant: Plant sp 50.5 80 0.0017 21.6 7.2 42 112-159 96-139 (186)
395 KOG2066 Vacuolar assembly/sort 50.4 1.2E+02 0.0026 25.9 7.4 77 54-143 363-439 (846)
396 KOG4077 Cytochrome c oxidase, 50.2 67 0.0015 20.7 6.2 32 93-124 81-112 (149)
397 COG1747 Uncharacterized N-term 50.0 1.4E+02 0.0031 24.4 10.9 136 18-156 68-234 (711)
398 COG2405 Predicted nucleic acid 50.0 53 0.0011 21.4 4.4 43 128-171 111-153 (157)
399 PF07575 Nucleopor_Nup85: Nup8 49.5 88 0.0019 25.5 6.7 99 59-161 371-472 (566)
400 cd08329 CARD_BIRC2_BIRC3 Caspa 48.5 29 0.00063 20.8 3.0 62 7-69 28-89 (94)
401 PF03745 DUF309: Domain of unk 47.4 47 0.001 18.1 6.0 55 56-119 8-62 (62)
402 PF08542 Rep_fac_C: Replicatio 47.2 55 0.0012 18.8 4.2 25 100-125 9-33 (89)
403 PF09797 NatB_MDM20: N-acetylt 47.0 1.3E+02 0.0027 22.9 7.4 68 19-86 183-256 (365)
404 PRK14963 DNA polymerase III su 46.7 1.5E+02 0.0033 23.9 7.9 31 50-81 245-275 (504)
405 cd08336 DED_FADD Death Effecto 46.5 58 0.0013 18.9 4.1 40 62-117 37-77 (82)
406 smart00544 MA3 Domain in DAP-5 45.9 67 0.0015 19.5 8.7 26 20-45 6-31 (113)
407 KOG0376 Serine-threonine phosp 45.7 62 0.0013 25.7 5.0 98 54-172 11-115 (476)
408 PRK15180 Vi polysaccharide bio 45.6 1.6E+02 0.0036 23.8 8.7 55 104-158 331-388 (831)
409 PF10345 Cohesin_load: Cohesin 45.6 1.7E+02 0.0037 24.1 10.1 64 104-167 369-452 (608)
410 PF11123 DNA_Packaging_2: DNA 45.5 58 0.0013 18.6 4.7 47 109-155 10-73 (82)
411 smart00804 TAP_C C-terminal do 45.2 53 0.0011 18.1 3.5 23 140-162 38-61 (63)
412 PF09477 Type_III_YscG: Bacter 44.7 76 0.0017 19.8 8.9 86 62-165 21-106 (116)
413 COG4785 NlpI Lipoprotein NlpI, 43.5 1.2E+02 0.0026 21.7 12.0 141 15-157 98-267 (297)
414 cd08332 CARD_CASP2 Caspase act 42.8 71 0.0015 18.9 6.7 37 107-143 45-81 (90)
415 TIGR02710 CRISPR-associated pr 42.5 49 0.0011 25.5 4.0 41 133-173 136-176 (380)
416 cd04402 RhoGAP_ARHGAP20 RhoGAP 41.8 46 0.00099 22.7 3.6 8 18-25 89-96 (192)
417 PF09868 DUF2095: Uncharacteri 41.8 54 0.0012 20.5 3.4 19 102-120 67-85 (128)
418 PF10475 DUF2450: Protein of u 41.7 45 0.00098 24.5 3.7 95 15-120 126-221 (291)
419 KOG1941 Acetylcholine receptor 41.6 1.7E+02 0.0036 22.8 7.5 142 17-167 84-247 (518)
420 cd04389 RhoGAP_KIAA1688 RhoGAP 41.6 1E+02 0.0022 21.0 5.2 48 7-57 83-132 (187)
421 PF01475 FUR: Ferric uptake re 41.4 58 0.0013 20.1 3.8 34 132-165 12-45 (120)
422 PF05944 Phage_term_smal: Phag 41.4 59 0.0013 20.9 3.7 31 129-159 50-80 (132)
423 PRK05629 hypothetical protein; 41.0 1.5E+02 0.0032 22.0 9.2 30 133-163 200-229 (318)
424 PRK13342 recombination factor 40.8 1.7E+02 0.0037 22.7 13.1 43 129-171 229-274 (413)
425 PF14840 DNA_pol3_delt_C: Proc 40.7 35 0.00076 21.6 2.6 27 140-166 10-36 (125)
426 KOG1114 Tripeptidyl peptidase 40.4 2.7E+02 0.0058 24.8 8.6 48 125-172 1229-1277(1304)
427 cd08326 CARD_CASP9 Caspase act 40.0 78 0.0017 18.5 6.8 40 107-146 41-80 (84)
428 PRK14962 DNA polymerase III su 39.9 1.9E+02 0.0042 23.1 11.3 40 128-168 245-284 (472)
429 KOG0686 COP9 signalosome, subu 39.9 1.9E+02 0.004 22.8 12.4 61 16-76 150-216 (466)
430 PF15469 Sec5: Exocyst complex 39.7 1.2E+02 0.0025 20.4 8.1 25 141-165 153-177 (182)
431 cd00280 TRFH Telomeric Repeat 39.4 78 0.0017 21.8 4.2 25 132-156 116-140 (200)
432 COG0457 NrfG FOG: TPR repeat [ 39.0 1.1E+02 0.0024 19.9 13.9 50 106-155 177-230 (291)
433 cd04403 RhoGAP_ARHGAP27_15_12_ 39.0 70 0.0015 21.7 4.1 18 39-56 81-100 (187)
434 PF11838 ERAP1_C: ERAP1-like C 38.9 1.5E+02 0.0034 21.6 11.2 90 63-162 146-237 (324)
435 PF07163 Pex26: Pex26 protein; 38.6 1.6E+02 0.0036 21.8 9.6 93 20-121 87-183 (309)
436 PRK10941 hypothetical protein; 38.3 1.6E+02 0.0034 21.6 9.5 76 97-172 182-261 (269)
437 cd04400 RhoGAP_fBEM3 RhoGAP_fB 38.1 1.3E+02 0.0028 20.5 5.4 13 60-72 48-60 (190)
438 cd01671 CARD Caspase activatio 37.9 53 0.0011 18.5 3.0 36 28-63 39-74 (80)
439 cd00045 DED The Death Effector 37.6 80 0.0017 18.0 3.9 40 62-117 35-75 (77)
440 PF04034 DUF367: Domain of unk 37.6 1.1E+02 0.0024 19.6 5.9 58 17-74 67-126 (127)
441 PF08631 SPO22: Meiosis protei 37.4 1.6E+02 0.0035 21.4 12.0 99 48-162 85-192 (278)
442 KOG1550 Extracellular protein 37.3 2.3E+02 0.005 23.1 11.6 117 26-157 259-394 (552)
443 KOG0591 NIMA (never in mitosis 36.6 1.8E+02 0.0039 21.9 5.9 55 117-173 70-135 (375)
444 COG3294 HD supefamily hydrolas 36.4 29 0.00063 24.6 1.9 21 144-164 67-87 (269)
445 KOG2063 Vacuolar assembly/sort 36.3 3E+02 0.0065 24.2 8.6 26 19-44 507-532 (877)
446 PF07720 TPR_3: Tetratricopept 36.0 55 0.0012 15.6 3.4 16 54-69 8-23 (36)
447 COG5159 RPN6 26S proteasome re 35.4 1.9E+02 0.0042 21.7 7.4 97 17-122 46-151 (421)
448 cd08340 DED_c-FLIP_repeat2 Dea 35.0 94 0.002 18.0 4.0 39 61-115 36-75 (81)
449 KOG4642 Chaperone-dependent E3 34.8 1.8E+02 0.0039 21.2 8.3 98 57-169 20-124 (284)
450 PF12069 DUF3549: Protein of u 34.2 2.1E+02 0.0046 21.8 7.6 71 101-174 171-242 (340)
451 cd04379 RhoGAP_SYD1 RhoGAP_SYD 34.2 1.6E+02 0.0034 20.5 5.3 19 39-57 84-104 (207)
452 cd04399 RhoGAP_fRGD2 RhoGAP_fR 34.0 82 0.0018 22.0 3.9 24 35-58 127-150 (212)
453 smart00386 HAT HAT (Half-A-TPR 34.0 47 0.001 14.2 3.8 16 141-156 1-16 (33)
454 TIGR03581 EF_0839 conserved hy 33.9 1.7E+02 0.0038 20.7 5.9 79 32-123 137-235 (236)
455 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 33.9 1.1E+02 0.0025 21.0 4.5 18 39-56 81-100 (196)
456 cd08810 CARD_BCL10 Caspase act 33.8 82 0.0018 18.5 3.2 32 28-60 42-73 (84)
457 KOG4507 Uncharacterized conser 33.7 90 0.0019 25.9 4.3 81 29-124 620-704 (886)
458 KOG4077 Cytochrome c oxidase, 33.1 1.4E+02 0.003 19.3 6.5 47 123-170 80-126 (149)
459 PF01371 Trp_repressor: Trp re 33.0 68 0.0015 19.0 2.8 28 99-126 3-30 (87)
460 cd04374 RhoGAP_Graf RhoGAP_Gra 32.9 80 0.0017 21.9 3.6 50 39-89 97-148 (203)
461 KOG2581 26S proteasome regulat 32.9 2.5E+02 0.0054 22.2 10.5 121 26-156 136-276 (493)
462 cd04373 RhoGAP_p190 RhoGAP_p19 32.8 1.1E+02 0.0024 20.7 4.3 7 39-45 79-85 (185)
463 cd04406 RhoGAP_myosin_IXA RhoG 32.5 1.3E+02 0.0028 20.5 4.6 8 49-56 90-97 (186)
464 PRK11639 zinc uptake transcrip 32.2 1.6E+02 0.0034 19.7 6.4 39 127-165 25-63 (169)
465 COG5053 CDC33 Translation init 32.2 1E+02 0.0022 21.3 3.8 49 46-94 54-102 (217)
466 PF12169 DNA_pol3_gamma3: DNA 32.1 75 0.0016 20.2 3.3 34 129-163 17-50 (143)
467 KOG0890 Protein kinase of the 31.8 3.9E+02 0.0085 26.4 8.2 46 26-71 1393-1444(2382)
468 PF12816 Vps8: Golgi CORVET co 31.7 43 0.00092 23.1 2.1 71 9-80 15-85 (196)
469 COG4649 Uncharacterized protei 31.7 1.8E+02 0.0038 20.1 8.1 109 2-124 75-195 (221)
470 cd08333 DED_Caspase_8_repeat1 31.6 1.1E+02 0.0024 17.8 4.1 44 61-120 34-78 (82)
471 PF04124 Dor1: Dor1-like famil 31.3 95 0.0021 23.4 4.1 22 101-122 111-132 (338)
472 PRK09857 putative transposase; 31.3 1.3E+02 0.0027 22.3 4.6 82 1-83 192-276 (292)
473 cd08338 DED_PEA15 Death Effect 30.8 1.2E+02 0.0025 17.8 4.4 43 61-119 36-79 (84)
474 PF02259 FAT: FAT domain; Int 30.2 2.3E+02 0.0049 20.9 12.6 53 22-76 4-58 (352)
475 PF14518 Haem_oxygenas_2: Iron 30.1 1.3E+02 0.0027 18.0 3.9 39 103-141 54-92 (106)
476 PF14744 WASH-7_mid: WASH comp 30.1 51 0.0011 25.0 2.4 28 142-169 281-308 (350)
477 KOG2610 Uncharacterized conser 29.9 2.6E+02 0.0057 21.6 9.8 108 30-152 117-234 (491)
478 COG2909 MalT ATP-dependent tra 29.6 3.9E+02 0.0084 23.4 9.1 59 18-76 459-526 (894)
479 PF11084 DUF2621: Protein of u 29.4 1.6E+02 0.0035 18.9 5.6 36 46-81 100-135 (141)
480 KOG4414 COP9 signalosome, subu 29.0 1.7E+02 0.0038 19.3 6.5 29 94-122 37-65 (197)
481 PF15297 CKAP2_C: Cytoskeleton 28.9 1.1E+02 0.0023 23.4 3.8 31 50-80 143-173 (353)
482 cd04390 RhoGAP_ARHGAP22_24_25 28.7 1.1E+02 0.0023 21.0 3.7 11 16-26 74-84 (199)
483 cd08775 DED_Caspase-like_repea 28.7 1.3E+02 0.0027 17.5 4.0 39 61-115 36-75 (81)
484 KOG1166 Mitotic checkpoint ser 28.1 2.4E+02 0.0052 25.0 6.2 53 59-124 90-142 (974)
485 cd04384 RhoGAP_CdGAP RhoGAP_Cd 28.0 2E+02 0.0044 19.7 5.5 50 120-170 84-135 (195)
486 PF02184 HAT: HAT (Half-A-TPR) 27.9 77 0.0017 14.8 2.7 24 142-167 2-25 (32)
487 KOG3154 Uncharacterized conser 27.7 1.8E+02 0.004 20.6 4.5 58 18-75 149-208 (263)
488 cd08792 DED_Caspase_8_10_repea 27.6 1.3E+02 0.0028 17.2 3.7 38 62-115 35-73 (77)
489 COG0735 Fur Fe2+/Zn2+ uptake r 27.6 1.8E+02 0.0039 18.9 6.8 43 127-169 20-62 (145)
490 PF08771 Rapamycin_bind: Rapam 27.4 1.5E+02 0.0032 17.9 4.2 21 55-75 22-42 (100)
491 cd04407 RhoGAP_myosin_IXB RhoG 27.4 1.9E+02 0.0041 19.6 4.7 8 42-49 117-124 (186)
492 smart00638 LPD_N Lipoprotein N 27.3 3.4E+02 0.0075 22.1 14.7 64 14-79 308-372 (574)
493 PRK02287 hypothetical protein; 27.1 2.1E+02 0.0045 19.4 6.6 59 17-75 108-168 (171)
494 PF04124 Dor1: Dor1-like famil 27.0 2.8E+02 0.0061 20.9 8.8 26 52-77 111-136 (338)
495 TIGR02531 yecD_yerC TrpR-relat 26.7 1.4E+02 0.0031 17.6 3.5 27 49-75 4-30 (88)
496 cd08304 DD_superfamily The Dea 26.6 68 0.0015 17.8 2.0 33 34-66 34-66 (69)
497 KOG3807 Predicted membrane pro 26.5 3E+02 0.0066 21.2 8.1 75 52-139 280-360 (556)
498 TIGR02328 conserved hypothetic 26.3 59 0.0013 20.3 1.8 17 147-163 55-71 (120)
499 COG5108 RPO41 Mitochondrial DN 26.1 4.2E+02 0.0091 22.7 10.3 114 21-135 33-157 (1117)
500 PF09670 Cas_Cas02710: CRISPR- 26.0 1.8E+02 0.0039 22.4 4.8 38 134-172 138-177 (379)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.1e-37 Score=244.97 Aligned_cols=162 Identities=35% Similarity=0.616 Sum_probs=156.8
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhh---
Q 045555 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT--- 90 (175)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~--- 90 (175)
||..+||+||.+|++.|++++|.++|+.|.++|.++||+||.+|++.|++++|.++|++|.+.|+.||..||+.++.
T Consensus 257 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~ 336 (697)
T PLN03081 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336 (697)
T ss_pred ccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 46667789999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ------------------ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 045555 91 ------------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152 (175)
Q Consensus 91 ------------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 152 (175)
++.||..++|+||++|++.|++++|.++|++|.+||..+||+||.+|+++|+.++|.++|++
T Consensus 337 ~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~ 416 (697)
T PLN03081 337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFER 416 (697)
T ss_pred hccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCCcHHHHHHHHhhhcCC
Q 045555 153 MLRASIRLDEVTYVGVLSACTHN 175 (175)
Q Consensus 153 m~~~g~~p~~~t~~~ll~~~~~~ 175 (175)
|.+.|+.||..||+.+|.+|+++
T Consensus 417 M~~~g~~Pd~~T~~~ll~a~~~~ 439 (697)
T PLN03081 417 MIAEGVAPNHVTFLAVLSACRYS 439 (697)
T ss_pred HHHhCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999999874
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.7e-35 Score=235.69 Aligned_cols=174 Identities=30% Similarity=0.519 Sum_probs=166.4
Q ss_pred chHHHHhhccCC----CcHHHHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCC
Q 045555 2 GFALEIFGNMKN----KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 77 (175)
Q Consensus 2 ~~A~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 77 (175)
+.|.+++..|.+ ||..+||.++.+|++.|+++.|.++|++|.+||.++||++|.+|++.|++++|+++|++|.+.|
T Consensus 140 ~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g 219 (697)
T PLN03081 140 RCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDG 219 (697)
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 457778888764 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHhhh---------------------ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHHH
Q 045555 78 IRRDEFTTVRILT---------------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVG 136 (175)
Q Consensus 78 ~~p~~~~~~~l~~---------------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~ 136 (175)
+.|+..||+.++. ++.||..++|+||++|++.|++++|.++|++|.++|+.+||++|.+
T Consensus 220 ~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~ 299 (697)
T PLN03081 220 SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAG 299 (697)
T ss_pred CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHH
Confidence 9999999999876 6789999999999999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhhhcCC
Q 045555 137 LAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175 (175)
Q Consensus 137 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 175 (175)
|++.|++++|.++|++|.+.|+.||..||+.++.+|++.
T Consensus 300 y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~ 338 (697)
T PLN03081 300 YALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL 338 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999863
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.2e-35 Score=236.92 Aligned_cols=174 Identities=21% Similarity=0.313 Sum_probs=156.3
Q ss_pred chHHHHhhccC------CCcHHHHHHHHHHHHhcCChhHHHHHhhcCCC----CChhHHHHHHHHHhccCChHHHHHHHH
Q 045555 2 GFALEIFGNMK------NKDVISWTTIVSGYINRGQVDIARQYFAQMPE----RDYVLWTAMIDGYLRVNRFREALTLFR 71 (175)
Q Consensus 2 ~~A~~~~~~m~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~ 71 (175)
++|.++|++|. .||..+|+++|.+|++.|++++|.++|+.|.+ |+..+|+.+|.+|++.|++++|.++|+
T Consensus 559 deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~ 638 (1060)
T PLN03218 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD 638 (1060)
T ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 57888888884 37888888888888888888888888888874 577889999999999999999999999
Q ss_pred HhHhCCCCCChHHHHHhhh---------------------ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhh----cCCC
Q 045555 72 EMQTSNIRRDEFTTVRILT---------------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM----LRKD 126 (175)
Q Consensus 72 ~m~~~~~~p~~~~~~~l~~---------------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~----~~~~ 126 (175)
+|.+.|+.||..+|+.++. ++.|+..+|+++|.+|++.|++++|.++|++| ..||
T Consensus 639 eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd 718 (1060)
T PLN03218 639 DMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT 718 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999998888 78899999999999999999999999999999 4689
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhhhcCC
Q 045555 127 KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175 (175)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 175 (175)
..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.
T Consensus 719 vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 719 VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999863
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.2e-34 Score=235.56 Aligned_cols=173 Identities=22% Similarity=0.362 Sum_probs=129.5
Q ss_pred chHHHHhhccCC----CcHHHHHHHHHHHHhcCChhHHHHHhhcCC----CCChhHHHHHHHHHhccCChHHHHHHHHHh
Q 045555 2 GFALEIFGNMKN----KDVISWTTIVSGYINRGQVDIARQYFAQMP----ERDYVLWTAMIDGYLRVNRFREALTLFREM 73 (175)
Q Consensus 2 ~~A~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 73 (175)
++|.++|++|.+ ||..+|+++|.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|
T Consensus 454 e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M 533 (1060)
T PLN03218 454 DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIM 533 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 456777777764 677777777777777777777777777776 367777777777777777777777777777
Q ss_pred HhCCCCCChHHHHHhhh-----------------------ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC----CC
Q 045555 74 QTSNIRRDEFTTVRILT-----------------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR----KD 126 (175)
Q Consensus 74 ~~~~~~p~~~~~~~l~~-----------------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~ 126 (175)
.+.|+.||..+|+.++. ++.||..+|+++|.+|++.|++++|.++|+.|.+ |+
T Consensus 534 ~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~ 613 (1060)
T PLN03218 534 RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT 613 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 77777777777777777 3567777777777777777777777777777743 45
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhhhcC
Q 045555 127 KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174 (175)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 174 (175)
..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 614 ~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k 661 (1060)
T PLN03218 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH 661 (1060)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 677777777777777777777777777777777777777777777765
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.8e-35 Score=236.38 Aligned_cols=162 Identities=36% Similarity=0.568 Sum_probs=155.5
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhh---
Q 045555 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT--- 90 (175)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~--- 90 (175)
||..+||++|.+|++.|++++|..+|+.|.+||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.
T Consensus 220 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~ 299 (857)
T PLN03077 220 LDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACE 299 (857)
T ss_pred cccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Confidence 45556688889999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ------------------ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 045555 91 ------------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152 (175)
Q Consensus 91 ------------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 152 (175)
|+.||..+||+||.+|++.|++++|.++|++|..||..+||.+|.+|++.|++++|.++|++
T Consensus 300 ~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~ 379 (857)
T PLN03077 300 LLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYAL 379 (857)
T ss_pred hcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCCcHHHHHHHHhhhcCC
Q 045555 153 MLRASIRLDEVTYVGVLSACTHN 175 (175)
Q Consensus 153 m~~~g~~p~~~t~~~ll~~~~~~ 175 (175)
|.+.|+.||..||+.++.+|++.
T Consensus 380 M~~~g~~Pd~~t~~~ll~a~~~~ 402 (857)
T PLN03077 380 MEQDNVSPDEITIASVLSACACL 402 (857)
T ss_pred HHHhCCCCCceeHHHHHHHHhcc
Confidence 99999999999999999999863
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-33 Score=229.77 Aligned_cols=161 Identities=36% Similarity=0.554 Sum_probs=155.7
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhh---
Q 045555 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT--- 90 (175)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~--- 90 (175)
++...+|+++.+|++.|+++.|.++|++|.+||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+++
T Consensus 119 ~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~ 198 (857)
T PLN03077 119 LGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG 198 (857)
T ss_pred CCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhC
Confidence 56677899999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ------------------ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 045555 91 ------------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152 (175)
Q Consensus 91 ------------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 152 (175)
|+.||..++|++|.+|++.|++++|.++|++|.+||..+||++|.+|++.|++++|.++|++
T Consensus 199 ~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 199 GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred CccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCCcHHHHHHHHhhhcC
Q 045555 153 MLRASIRLDEVTYVGVLSACTH 174 (175)
Q Consensus 153 m~~~g~~p~~~t~~~ll~~~~~ 174 (175)
|.+.|+.||..||+.+|.+|++
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~ 300 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACEL 300 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHh
Confidence 9999999999999999999986
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.74 E-value=9.2e-18 Score=89.59 Aligned_cols=50 Identities=26% Similarity=0.443 Sum_probs=48.9
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhhhcC
Q 045555 125 KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174 (175)
Q Consensus 125 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 174 (175)
||+.+||++|++|++.|++++|.++|++|.++|++||..||+.+|++|||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999986
No 8
>PF13041 PPR_2: PPR repeat family
Probab=99.60 E-value=4.5e-15 Score=79.09 Aligned_cols=50 Identities=40% Similarity=0.741 Sum_probs=44.5
Q ss_pred CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHh
Q 045555 45 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCK 108 (175)
Q Consensus 45 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~ 108 (175)
||+++||++|++|++.|++++|.++|++|.+.|+.||..|| +.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty--------------~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTY--------------NILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHH--------------HHHHHHHcC
Confidence 78999999999999999999999999999999998888888 567777654
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.46 E-value=7.9e-12 Score=93.93 Aligned_cols=61 Identities=13% Similarity=0.290 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCC
Q 045555 17 ISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 77 (175)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 77 (175)
..+..+...|.+.|++++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG 171 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc
Confidence 3455555566666666666666665543 244455555556666666666666666555543
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.42 E-value=1.9e-11 Score=91.92 Aligned_cols=170 Identities=15% Similarity=0.132 Sum_probs=104.2
Q ss_pred chHHHHhhccCC--C-cHHHHHHHHHHHHhcCChhHHHHHhhcCCC-CC------hhHHHHHHHHHhccCChHHHHHHHH
Q 045555 2 GFALEIFGNMKN--K-DVISWTTIVSGYINRGQVDIARQYFAQMPE-RD------YVLWTAMIDGYLRVNRFREALTLFR 71 (175)
Q Consensus 2 ~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~------~~~~~~li~~~~~~~~~~~a~~~~~ 71 (175)
++|.+.|+++.+ | +..++..+...+.+.|++++|..+++.+.. ++ ...+..+...|.+.|++++|..+|+
T Consensus 52 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~ 131 (389)
T PRK11788 52 DKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFL 131 (389)
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 567788887765 4 556788888888888888888888887664 21 2457777888888888888888888
Q ss_pred HhHhCCCCCChHHHHHhhh-------------------ccCcc------hhHHHHHHHHHHhcCCHHHHHHHHHhhcC--
Q 045555 72 EMQTSNIRRDEFTTVRILT-------------------TFNND------IFVGIALIDMYCKCGDVEKAQRVFWKMLR-- 124 (175)
Q Consensus 72 ~m~~~~~~p~~~~~~~l~~-------------------~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~-- 124 (175)
++.+.. .++..++..+.. ...|+ ...+..+...+.+.|++++|.+.|+++.+
T Consensus 132 ~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 210 (389)
T PRK11788 132 QLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD 210 (389)
T ss_pred HHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC
Confidence 887652 223334433332 01111 12344555666667777777777776643
Q ss_pred C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhhh
Q 045555 125 K-DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172 (175)
Q Consensus 125 ~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 172 (175)
| +...+..+...+.+.|++++|.+.|+++.+.+-.+...++..+..+|
T Consensus 211 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~ 259 (389)
T PRK11788 211 PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECY 259 (389)
T ss_pred cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHH
Confidence 2 34455556666666666666666666666542222233344444443
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.23 E-value=5.3e-10 Score=91.40 Aligned_cols=169 Identities=14% Similarity=0.063 Sum_probs=116.6
Q ss_pred chHHHHhhccCC---CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC--CChhHHHHHHHHHhccCChHHHHHHHHHhHhC
Q 045555 2 GFALEIFGNMKN---KDVISWTTIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALTLFREMQTS 76 (175)
Q Consensus 2 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (175)
++|.++++.+.+ ++...+..+...+.+.|++++|...|+.+.+ |+..++..+..++.+.|++++|.+.++++.+.
T Consensus 686 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 765 (899)
T TIGR02917 686 ESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT 765 (899)
T ss_pred HHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 567777777765 3566777777888888888888888887653 55566667777777778888887777777765
Q ss_pred CCCCChHHHHHhhh--------------------ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHH
Q 045555 77 NIRRDEFTTVRILT--------------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAM 133 (175)
Q Consensus 77 ~~~p~~~~~~~l~~--------------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l 133 (175)
.. .+...+..+.. ..+++..+++.+...+.+.|+ ++|...++.... | +...+..+
T Consensus 766 ~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~ 843 (899)
T TIGR02917 766 HP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTL 843 (899)
T ss_pred CC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHH
Confidence 32 22222222111 234456667777778888887 778777777633 2 55667778
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhhhc
Q 045555 134 IVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173 (175)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 173 (175)
...+...|++++|.+.|+++.+.+.. +..++..+..++.
T Consensus 844 ~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~ 882 (899)
T TIGR02917 844 GWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALL 882 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHH
Confidence 88888889999999999988886543 7777777766654
No 12
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.21 E-value=1.3e-09 Score=89.11 Aligned_cols=73 Identities=12% Similarity=0.251 Sum_probs=34.7
Q ss_pred hHHHHhhccCC---CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 3 FALEIFGNMKN---KDVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 3 ~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
+|..+|+++.+ .+...+..+...|.+.|++++|..+++.+.+ .+...|..+..++.+.|++++|...|+++.+
T Consensus 551 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 629 (899)
T TIGR02917 551 EAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629 (899)
T ss_pred HHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444432 2333444455555555555555555554432 2334455555555555555555555555544
No 13
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=2.1e-09 Score=79.51 Aligned_cols=166 Identities=14% Similarity=0.197 Sum_probs=130.9
Q ss_pred HhhccCCCcHHHHHHHHHHHHhcCChhHHHHHhhcCC-----------------------------------CCChhHHH
Q 045555 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMP-----------------------------------ERDYVLWT 51 (175)
Q Consensus 7 ~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-----------------------------------~~~~~~~~ 51 (175)
+|+..+ ++..++..||.++|+-...+.|.++|++.. .||..|||
T Consensus 199 ~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 199 LFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred HHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHH
Confidence 333333 456688888888888888888888777653 26999999
Q ss_pred HHHHHHhccCChHH----HHHHHHHhHhCCCCCChHHHHHhhh------------------------------ccCcchh
Q 045555 52 AMIDGYLRVNRFRE----ALTLFREMQTSNIRRDEFTTVRILT------------------------------TFNNDIF 97 (175)
Q Consensus 52 ~li~~~~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~l~~------------------------------~~~~~~~ 97 (175)
+++.+..+.|+++. |.+++.+|++.|+.|...+|..++. ..+.|..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 99999999998755 4678889999999999999998888 1233556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcC--------C---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHH
Q 045555 98 VGIALIDMYCKCGDVEKAQRVFWKMLR--------K---DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYV 166 (175)
Q Consensus 98 ~~~~li~~~~~~~~~~~a~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 166 (175)
.+...++.|.+..+.+.|.++..-... + ...-|..+....|+....+.-.+.|..|.-.-+-|+..+..
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~ 437 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHH
Confidence 777888888899999999888776632 1 23356778888888889999999999999888899999999
Q ss_pred HHHhhhc
Q 045555 167 GVLSACT 173 (175)
Q Consensus 167 ~ll~~~~ 173 (175)
.+++|..
T Consensus 438 ~~lrA~~ 444 (625)
T KOG4422|consen 438 HLLRALD 444 (625)
T ss_pred HHHHHHh
Confidence 9988764
No 14
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=1.7e-09 Score=80.06 Aligned_cols=123 Identities=14% Similarity=0.159 Sum_probs=86.1
Q ss_pred HhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHH
Q 045555 38 YFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQR 117 (175)
Q Consensus 38 ~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 117 (175)
++.+....+..++.+||.++|+-...+.|.+++.+-.....+.+..+| |.+|.+-+-..+-+..-+
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aF--------------N~lI~~~S~~~~K~Lv~E 263 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAF--------------NGLIGASSYSVGKKLVAE 263 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhh--------------hhhhhHHHhhccHHHHHH
Confidence 444444456678999999999999999999999999988777676666 455544443333333333
Q ss_pred HHHhhcCCChhhHHHHHHHHHhcCChhHH----HHHHHHHHHCCCCCcHHHHHHHHhhhcC
Q 045555 118 VFWKMLRKDKFTWTAMIVGLAISGHGDTA----LDMFSQMLRASIRLDEVTYVGVLSACTH 174 (175)
Q Consensus 118 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a----~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 174 (175)
+...-..||..|+|+++.+.++.|+++.| .+++.+|++-|+.|...+|..+|...+|
T Consensus 264 Misqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~r 324 (625)
T KOG4422|consen 264 MISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKR 324 (625)
T ss_pred HHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcc
Confidence 33333567788888888887777777654 5566777777888887777777765544
No 15
>PF12854 PPR_1: PPR repeat
Probab=99.13 E-value=1e-10 Score=56.68 Aligned_cols=32 Identities=38% Similarity=0.573 Sum_probs=22.5
Q ss_pred ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 045555 91 TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM 122 (175)
Q Consensus 91 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 122 (175)
|+.||..+||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34555556677777777777777777777776
No 16
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.10 E-value=2.2e-08 Score=69.39 Aligned_cols=142 Identities=12% Similarity=0.096 Sum_probs=100.0
Q ss_pred chHHHHhhccCC--C-cHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 2 GFALEIFGNMKN--K-DVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 2 ~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
++|.+.+++..+ | +...+..+...+.+.|++++|.+.+++..+ .+...+..+...+...|++++|...+++..+
T Consensus 48 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 48 EVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 345555555443 3 455666777777777777777777776543 3445566667777777777777777777765
Q ss_pred CCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHHH
Q 045555 76 SNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMFSQ 152 (175)
Q Consensus 76 ~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 152 (175)
....| .....+..+...+.+.|++++|...+.+... | +...+..+...+...|++++|.+.+++
T Consensus 128 ~~~~~-------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 194 (234)
T TIGR02521 128 DPLYP-------------QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLER 194 (234)
T ss_pred ccccc-------------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 42111 1223445678888999999999999998854 2 456788888999999999999999999
Q ss_pred HHHC
Q 045555 153 MLRA 156 (175)
Q Consensus 153 m~~~ 156 (175)
..+.
T Consensus 195 ~~~~ 198 (234)
T TIGR02521 195 YQQT 198 (234)
T ss_pred HHHh
Confidence 8876
No 17
>PF12854 PPR_1: PPR repeat
Probab=99.03 E-value=4e-10 Score=54.59 Aligned_cols=32 Identities=28% Similarity=0.510 Sum_probs=30.1
Q ss_pred cCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 045555 123 LRKDKFTWTAMIVGLAISGHGDTALDMFSQML 154 (175)
Q Consensus 123 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (175)
..||..+||++|.+||+.|++++|.++|++|.
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 46899999999999999999999999999984
No 18
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=99.00 E-value=9.4e-10 Score=53.61 Aligned_cols=35 Identities=34% Similarity=0.595 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcH
Q 045555 128 FTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162 (175)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 162 (175)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999983
No 19
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.94 E-value=3e-08 Score=71.58 Aligned_cols=153 Identities=19% Similarity=0.241 Sum_probs=87.8
Q ss_pred hHHHHhhccCC--CcHHHHHHHHHHHHhcCChhHHHHHhhcCC-----CCChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 3 FALEIFGNMKN--KDVISWTTIVSGYINRGQVDIARQYFAQMP-----ERDYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 3 ~A~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
+|.++++..-+ ++...+...+..+.+.++++++.++++... +++...|..+...+.+.|++++|++.+++.++
T Consensus 95 ~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~ 174 (280)
T PF13429_consen 95 EALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE 174 (280)
T ss_dssp -----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555544432 455666677777777788877777777643 23566677777777788888888888888777
Q ss_pred CCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhc---CCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 045555 76 SNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML---RKDKFTWTAMIVGLAISGHGDTALDMFSQ 152 (175)
Q Consensus 76 ~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 152 (175)
.. | .+..+.+.++..+...|+.+++.++++... ..|...|..+..+|...|+.++|...|++
T Consensus 175 ~~--P-------------~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 175 LD--P-------------DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp H---T-------------T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred cC--C-------------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccc
Confidence 43 2 235556678888888888888776666653 34667778888888888888888888888
Q ss_pred HHHCCCCC-cHHHHHHHHhhh
Q 045555 153 MLRASIRL-DEVTYVGVLSAC 172 (175)
Q Consensus 153 m~~~g~~p-~~~t~~~ll~~~ 172 (175)
.... .| |+.+...+-+++
T Consensus 240 ~~~~--~p~d~~~~~~~a~~l 258 (280)
T PF13429_consen 240 ALKL--NPDDPLWLLAYADAL 258 (280)
T ss_dssp HHHH--STT-HHHHHHHHHHH
T ss_pred cccc--ccccccccccccccc
Confidence 7763 34 455544444443
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.90 E-value=8.2e-08 Score=76.61 Aligned_cols=153 Identities=14% Similarity=0.014 Sum_probs=103.5
Q ss_pred chHHHHhhccCC-----C-cHHHHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHH
Q 045555 2 GFALEIFGNMKN-----K-DVISWTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFRE 72 (175)
Q Consensus 2 ~~A~~~~~~m~~-----~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~ 72 (175)
++|.+.|+...+ | +...++.+...+...|++++|...|++..+ | +...|..+...+...|++++|+..|++
T Consensus 311 ~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~ 390 (615)
T TIGR00990 311 EEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDK 390 (615)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 456666665542 2 345677777777778888888888877653 3 344667777777777778888877777
Q ss_pred hHhCCCCCC-hHHHHHhhh-------------------ccCc-chhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-Chh
Q 045555 73 MQTSNIRRD-EFTTVRILT-------------------TFNN-DIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKF 128 (175)
Q Consensus 73 m~~~~~~p~-~~~~~~l~~-------------------~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~ 128 (175)
..+.. |+ ...+..+-. ...| +...+..+...+.+.|++++|...|+...+ | +..
T Consensus 391 al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~ 468 (615)
T TIGR00990 391 ALKLN--SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPD 468 (615)
T ss_pred HHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH
Confidence 76643 22 222221111 1223 355666778888888888888888888743 3 567
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 129 TWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
.|+.+...+...|++++|.+.|++..+.
T Consensus 469 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 469 VYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 7888888888888999998888887764
No 21
>PRK12370 invasion protein regulator; Provisional
Probab=98.90 E-value=1.9e-07 Score=73.66 Aligned_cols=140 Identities=11% Similarity=-0.016 Sum_probs=104.0
Q ss_pred chHHHHhhccCC--C-cHHHHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 2 GFALEIFGNMKN--K-DVISWTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 2 ~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
++|...+++..+ | +..++..+...+...|++++|...|++..+ | +...+..+...+...|++++|+..+++..+
T Consensus 321 ~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~ 400 (553)
T PRK12370 321 IKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK 400 (553)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 356666766654 4 677888888899999999999999998764 4 456788889999999999999999999998
Q ss_pred CCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC---C-ChhhHHHHHHHHHhcCChhHHHHHHH
Q 045555 76 SNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR---K-DKFTWTAMIVGLAISGHGDTALDMFS 151 (175)
Q Consensus 76 ~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~a~~~~~ 151 (175)
....+.... ..+...+...|++++|...+++... | +...+..+..++...|+.++|...++
T Consensus 401 l~P~~~~~~---------------~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~ 465 (553)
T PRK12370 401 LDPTRAAAG---------------ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTK 465 (553)
T ss_pred cCCCChhhH---------------HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 653211111 1233345557888888888887742 3 34456667777888888888888888
Q ss_pred HHHHC
Q 045555 152 QMLRA 156 (175)
Q Consensus 152 ~m~~~ 156 (175)
++...
T Consensus 466 ~~~~~ 470 (553)
T PRK12370 466 EISTQ 470 (553)
T ss_pred Hhhhc
Confidence 86543
No 22
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.89 E-value=3.8e-09 Score=51.16 Aligned_cols=34 Identities=26% Similarity=0.471 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 045555 127 KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160 (175)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 160 (175)
+.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999998
No 23
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.87 E-value=4.4e-09 Score=51.15 Aligned_cols=35 Identities=40% Similarity=0.654 Sum_probs=32.7
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCCh
Q 045555 48 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDE 82 (175)
Q Consensus 48 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 82 (175)
.+||++|++|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999873
No 24
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.86 E-value=7.7e-08 Score=76.79 Aligned_cols=156 Identities=12% Similarity=0.144 Sum_probs=96.1
Q ss_pred CCcHHHHHHHHHHHHhcCChhHHHHHhhcCCC----------------------------CChhHHHHHHHHHhccCChH
Q 045555 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPE----------------------------RDYVLWTAMIDGYLRVNRFR 64 (175)
Q Consensus 13 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----------------------------~~~~~~~~li~~~~~~~~~~ 64 (175)
.||.++|..+|.-||..|+++.|- +|..|+- |...||..|..+|.+.|+..
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~hGDli 100 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIHGDLI 100 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhccchH
Confidence 499999999999999999999998 7777651 35578999999999999965
Q ss_pred H---HHHHHHHhHh----CCCCCChHHHHHhhh-----------------------------------------------
Q 045555 65 E---ALTLFREMQT----SNIRRDEFTTVRILT----------------------------------------------- 90 (175)
Q Consensus 65 ~---a~~~~~~m~~----~~~~p~~~~~~~l~~----------------------------------------------- 90 (175)
. +.+.+..+.. .|+.....-+..-++
T Consensus 101 ~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrq 180 (1088)
T KOG4318|consen 101 LFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQ 180 (1088)
T ss_pred HHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHH
Confidence 4 2222222211 233222222222222
Q ss_pred -----------------cc-CcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCC----hhhHHHHHHHHHhcCChhHHHH
Q 045555 91 -----------------TF-NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKD----KFTWTAMIVGLAISGHGDTALD 148 (175)
Q Consensus 91 -----------------~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~ 148 (175)
.. .|+..++.+++++-...|+.+.|..+..+|.+.+ .+-|-.++-+ .++...+..
T Consensus 181 nv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~ 257 (1088)
T KOG4318|consen 181 NVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEF 257 (1088)
T ss_pred hccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHH
Confidence 11 3566666666666666666666666666665542 2222223322 566666666
Q ss_pred HHHHHHHCCCCCcHHHHHHHHhhh
Q 045555 149 MFSQMLRASIRLDEVTYVGVLSAC 172 (175)
Q Consensus 149 ~~~~m~~~g~~p~~~t~~~ll~~~ 172 (175)
+++-|.+.|+.|++.|+..-+..|
T Consensus 258 vlrgmqe~gv~p~seT~adyvip~ 281 (1088)
T KOG4318|consen 258 VLRGMQEKGVQPGSETQADYVIPQ 281 (1088)
T ss_pred HHHHHHHhcCCCCcchhHHHHHhh
Confidence 666666666667666666554444
No 25
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.86 E-value=2.4e-07 Score=73.95 Aligned_cols=128 Identities=10% Similarity=0.016 Sum_probs=93.6
Q ss_pred HhcCChhHHHHHhhcCCC-----C-ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChH-HHHHhhh---------
Q 045555 27 INRGQVDIARQYFAQMPE-----R-DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEF-TTVRILT--------- 90 (175)
Q Consensus 27 ~~~~~~~~a~~~~~~m~~-----~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~--------- 90 (175)
...+++++|...|+...+ | +...|+.+...+...|++++|+..|++..... |+.. .|..+-.
T Consensus 305 ~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~ 382 (615)
T TIGR00990 305 KADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--PRVTQSYIKRASMNLELGDPD 382 (615)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHCCCHH
Confidence 446789999999998763 2 44568888888999999999999999998853 4322 2211111
Q ss_pred -----------ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 91 -----------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 91 -----------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
..+.+..++..+...+...|++++|...|++..+ | +...|..+...+.+.|++++|...|++.++.
T Consensus 383 eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 383 KAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2233466777888888888888888888888744 3 4556777777888888888888888887753
No 26
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.85 E-value=2.3e-07 Score=74.50 Aligned_cols=153 Identities=15% Similarity=0.063 Sum_probs=79.9
Q ss_pred chHHHHhhccCC----CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHH----HHHHH
Q 045555 2 GFALEIFGNMKN----KDVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFRE----ALTLF 70 (175)
Q Consensus 2 ~~A~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~----a~~~~ 70 (175)
++|...++.+.+ ++......+...+.+.|++++|...|+...+ .+...+..+...+.+.|++++ |...|
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 345555555433 1222333444556666666666666665443 234455556666666666554 56666
Q ss_pred HHhHhCCCCCChH-HHHHhhh-------------------ccCc-chhHHHHHHHHHHhcCCHHHHHHHHHhhcC--CCh
Q 045555 71 REMQTSNIRRDEF-TTVRILT-------------------TFNN-DIFVGIALIDMYCKCGDVEKAQRVFWKMLR--KDK 127 (175)
Q Consensus 71 ~~m~~~~~~p~~~-~~~~l~~-------------------~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~ 127 (175)
++..+. .|+.. .+..+-. ...| +...+..+..+|.+.|++++|.+.|+.+.. |+.
T Consensus 274 ~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 274 RHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 666553 22211 1111000 0111 233445566777777777777777777643 332
Q ss_pred hh-HHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 128 FT-WTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 128 ~~-~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
.. +..+..++...|+.++|.+.|++..+.
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 22 233445666777777777777776654
No 27
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.84 E-value=6.3e-07 Score=67.95 Aligned_cols=169 Identities=17% Similarity=0.225 Sum_probs=120.9
Q ss_pred chHHHHhhccCC--CcHHHHH--HHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhH
Q 045555 2 GFALEIFGNMKN--KDVISWT--TIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQ 74 (175)
Q Consensus 2 ~~A~~~~~~m~~--~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (175)
++|.+.+.++.+ |+....- .....+...|+++.|...++...+ | +......+...|.+.|+|++|.+++.++.
T Consensus 135 ~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~ 214 (398)
T PRK10747 135 ARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMA 214 (398)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 467788887776 5543333 336688899999999999999875 3 66778899999999999999999999999
Q ss_pred hCCCCCChH-------HHHHhhh--------------------ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC---
Q 045555 75 TSNIRRDEF-------TTVRILT--------------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--- 124 (175)
Q Consensus 75 ~~~~~p~~~-------~~~~l~~--------------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--- 124 (175)
+.+..++.. .|..++. ..+.+......+...+...|+.++|.+.+.+..+
T Consensus 215 k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~ 294 (398)
T PRK10747 215 KAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY 294 (398)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 987653221 2222121 1223455666677777777777777777666511
Q ss_pred ------------------------------C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhhh
Q 045555 125 ------------------------------K-DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172 (175)
Q Consensus 125 ------------------------------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 172 (175)
| |...+.++...+.+.|++++|.+.|+...+. .|+..++..+-..+
T Consensus 295 ~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~ 371 (398)
T PRK10747 295 DERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADAL 371 (398)
T ss_pred CHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 1 4455677888888999999999999998874 68888776665554
No 28
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.83 E-value=1.6e-08 Score=72.97 Aligned_cols=138 Identities=22% Similarity=0.223 Sum_probs=96.5
Q ss_pred hHHHHhhccC-----CCcHHHHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhH
Q 045555 3 FALEIFGNMK-----NKDVISWTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQ 74 (175)
Q Consensus 3 ~A~~~~~~m~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (175)
++.++++... .++...|..+...+.+.|++++|...|++..+ | |....+.++..+...|+.+++.+++....
T Consensus 128 ~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~ 207 (280)
T PF13429_consen 128 EAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLL 207 (280)
T ss_dssp HHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 4455555533 25788899999999999999999999999874 5 57788999999999999999999999988
Q ss_pred hCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHH
Q 045555 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMFS 151 (175)
Q Consensus 75 ~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~ 151 (175)
+.. +.+...+..+..+|...|+.++|...|+...+ | |......+..++...|+.++|.++.+
T Consensus 208 ~~~---------------~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 208 KAA---------------PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HH----------------HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------------
T ss_pred HHC---------------cCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 864 23344557899999999999999999999854 4 78888889999999999999999988
Q ss_pred HHHH
Q 045555 152 QMLR 155 (175)
Q Consensus 152 ~m~~ 155 (175)
+..+
T Consensus 273 ~~~~ 276 (280)
T PF13429_consen 273 QALR 276 (280)
T ss_dssp ----
T ss_pred cccc
Confidence 7654
No 29
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.82 E-value=4.4e-07 Score=62.76 Aligned_cols=139 Identities=14% Similarity=0.016 Sum_probs=111.3
Q ss_pred chHHHHhhccCC---CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC-----CChhHHHHHHHHHhccCChHHHHHHHHHh
Q 045555 2 GFALEIFGNMKN---KDVISWTTIVSGYINRGQVDIARQYFAQMPE-----RDYVLWTAMIDGYLRVNRFREALTLFREM 73 (175)
Q Consensus 2 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m 73 (175)
++|.+.++...+ .+...+..+...+...|++++|...|+.... .....+..+...+...|++++|...+++.
T Consensus 82 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 161 (234)
T TIGR02521 82 EKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRA 161 (234)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 457777776654 4567888899999999999999999998764 13456777888899999999999999999
Q ss_pred HhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC---CChhhHHHHHHHHHhcCChhHHHHHH
Q 045555 74 QTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR---KDKFTWTAMIVGLAISGHGDTALDMF 150 (175)
Q Consensus 74 ~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~ 150 (175)
.+.. |+ +...+..+...+...|++++|.+.+++..+ .+...+..+...+...|+.++|..+.
T Consensus 162 ~~~~--~~-------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 226 (234)
T TIGR02521 162 LQID--PQ-------------RPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYG 226 (234)
T ss_pred HHhC--cC-------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 8854 22 233456788999999999999999998743 35667777888888999999999998
Q ss_pred HHHHH
Q 045555 151 SQMLR 155 (175)
Q Consensus 151 ~~m~~ 155 (175)
+.+..
T Consensus 227 ~~~~~ 231 (234)
T TIGR02521 227 AQLQK 231 (234)
T ss_pred HHHHh
Confidence 88765
No 30
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.79 E-value=1.2e-08 Score=49.37 Aligned_cols=33 Identities=21% Similarity=0.390 Sum_probs=31.5
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHhHhCCCCC
Q 045555 48 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80 (175)
Q Consensus 48 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 80 (175)
.+|+.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
No 31
>PRK12370 invasion protein regulator; Provisional
Probab=98.74 E-value=1.1e-06 Score=69.48 Aligned_cols=140 Identities=10% Similarity=0.019 Sum_probs=106.1
Q ss_pred chHHHHhhccCC--C-cHHHHHHHHHHHH---------hcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHH
Q 045555 2 GFALEIFGNMKN--K-DVISWTTIVSGYI---------NRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREA 66 (175)
Q Consensus 2 ~~A~~~~~~m~~--~-~~~~~~~li~~~~---------~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a 66 (175)
++|+.+|++..+ | +...|..+..++. ..+++++|...+++..+ | +...+..+...+...|++++|
T Consensus 278 ~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A 357 (553)
T PRK12370 278 QQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVG 357 (553)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Confidence 467888887776 4 4456666655544 23457899999998775 3 667788888889999999999
Q ss_pred HHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--CCh-hhHHHHHHHHHhcCCh
Q 045555 67 LTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--KDK-FTWTAMIVGLAISGHG 143 (175)
Q Consensus 67 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~g~~ 143 (175)
...|++..+.+ |+ +...+..+...+...|++++|...++...+ |+. ..+..+...+...|++
T Consensus 358 ~~~~~~Al~l~--P~-------------~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~ 422 (553)
T PRK12370 358 SLLFKQANLLS--PI-------------SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGI 422 (553)
T ss_pred HHHHHHHHHhC--CC-------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCH
Confidence 99999999864 32 334456788999999999999999999855 432 2334455567778999
Q ss_pred hHHHHHHHHHHHC
Q 045555 144 DTALDMFSQMLRA 156 (175)
Q Consensus 144 ~~a~~~~~~m~~~ 156 (175)
++|.+.+++..+.
T Consensus 423 eeA~~~~~~~l~~ 435 (553)
T PRK12370 423 DDAIRLGDELRSQ 435 (553)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998765
No 32
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.73 E-value=1.2e-06 Score=70.39 Aligned_cols=52 Identities=10% Similarity=0.030 Sum_probs=33.4
Q ss_pred HHHhcCCHHHHHHHHHhhcCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 105 MYCKCGDVEKAQRVFWKMLRK----DKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 105 ~~~~~~~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
.+.+.|++++|...++.+... +...+..+...+...|++++|.+.+++..+.
T Consensus 186 ~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~ 241 (656)
T PRK15174 186 SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR 241 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 356677777777777776432 2233344456677777777777777777754
No 33
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.70 E-value=2.5e-08 Score=47.10 Aligned_cols=31 Identities=29% Similarity=0.529 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 045555 128 FTWTAMIVGLAISGHGDTALDMFSQMLRASI 158 (175)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 158 (175)
++|+.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988774
No 34
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.68 E-value=7.7e-07 Score=74.05 Aligned_cols=152 Identities=11% Similarity=0.013 Sum_probs=91.9
Q ss_pred chHHHHhhccCC--CcHHHHHHHHHHHHhcCChhHHHHHhhcCCCC---ChhHHHHHHHHHhccCChHHHHHHHHHhHhC
Q 045555 2 GFALEIFGNMKN--KDVISWTTIVSGYINRGQVDIARQYFAQMPER---DYVLWTAMIDGYLRVNRFREALTLFREMQTS 76 (175)
Q Consensus 2 ~~A~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (175)
++|...|+.+.. |+...+..+...+.+.|++++|...|++..+. +...+..+...+.+.|++++|...+++..+.
T Consensus 526 eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l 605 (987)
T PRK09782 526 ATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI 605 (987)
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 466777775553 44445566667777788888888887766542 2222222333344457777777777777764
Q ss_pred CCCCChHHHHHhhh-------------------cc-CcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHH
Q 045555 77 NIRRDEFTTVRILT-------------------TF-NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAM 133 (175)
Q Consensus 77 ~~~p~~~~~~~l~~-------------------~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l 133 (175)
. |+...+..+-. .. +.+...++.+...+...|++++|.+.++...+ | +...+..+
T Consensus 606 ~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nL 683 (987)
T PRK09782 606 A--PSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQL 683 (987)
T ss_pred C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3 33333322111 11 22345556666677777777777777777643 3 55667777
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 045555 134 IVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~ 155 (175)
..++...|++++|...|++..+
T Consensus 684 A~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 684 AYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHh
Confidence 7777777777777777777765
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=2.9e-06 Score=63.73 Aligned_cols=139 Identities=17% Similarity=0.196 Sum_probs=91.0
Q ss_pred chHHHHhhccCC--C-cHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 2 GFALEIFGNMKN--K-DVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 2 ~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
|+|+..|+...+ | ...+|+.|.+-|...++...|.+-|+...+ .|-..|..|..+|.-.+...=|+-.|++..+
T Consensus 347 EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~ 426 (559)
T KOG1155|consen 347 EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE 426 (559)
T ss_pred HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh
Confidence 344444544443 2 233455555555555555555555554332 3444555555555555555555555555444
Q ss_pred CCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC---ChhhHHHHHHHHHhcCChhHHHHHHHH
Q 045555 76 SNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK---DKFTWTAMIVGLAISGHGDTALDMFSQ 152 (175)
Q Consensus 76 ~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~ 152 (175)
- -+.|..+|.+|.++|.+.++.++|...|+....- +...+..+.+.|-+.++..+|...|.+
T Consensus 427 ~---------------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 427 L---------------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred c---------------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 2 1347889999999999999999999999998553 347899999999999999999998877
Q ss_pred HHH
Q 045555 153 MLR 155 (175)
Q Consensus 153 m~~ 155 (175)
-++
T Consensus 492 ~v~ 494 (559)
T KOG1155|consen 492 YVE 494 (559)
T ss_pred HHH
Confidence 664
No 36
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.65 E-value=1.2e-06 Score=68.09 Aligned_cols=148 Identities=15% Similarity=0.115 Sum_probs=106.0
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhh-
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT- 90 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~- 90 (175)
.+.+|.++.++|+-+++.+.|+..|++..+ ...++|+.+-+-+.....++.|...|+..+ ..|+..|++...
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~~rhYnAwYGl 495 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GVDPRHYNAWYGL 495 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh----cCCchhhHHHHhh
Confidence 578899999999999999999999998775 256677777777777777777777777663 345555655444
Q ss_pred ---------------------ccCcc-hhHHHHHHHHHHhcCCHHHHHHHHHhhcC---CChhhHHHHHHHHHhcCChhH
Q 045555 91 ---------------------TFNND-IFVGIALIDMYCKCGDVEKAQRVFWKMLR---KDKFTWTAMIVGLAISGHGDT 145 (175)
Q Consensus 91 ---------------------~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 145 (175)
.++|. ......+...+.+.|+.|+|.+++++... .|+-.--.....+...++.++
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHH
Confidence 33443 44455677788899999999999998843 255555556666777888899
Q ss_pred HHHHHHHHHHCCCCCcHHHHHHH
Q 045555 146 ALDMFSQMLRASIRLDEVTYVGV 168 (175)
Q Consensus 146 a~~~~~~m~~~g~~p~~~t~~~l 168 (175)
|+..++++++ +.|+..+--.+
T Consensus 576 al~~LEeLk~--~vP~es~v~~l 596 (638)
T KOG1126|consen 576 ALQELEELKE--LVPQESSVFAL 596 (638)
T ss_pred HHHHHHHHHH--hCcchHHHHHH
Confidence 9998888876 46665444333
No 37
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.65 E-value=1.5e-06 Score=65.22 Aligned_cols=123 Identities=19% Similarity=0.102 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcch
Q 045555 17 ISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDI 96 (175)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 96 (175)
....+++..+...++++.|.++|+++.+.+......+...+...++-.+|++++++.++.. +.+.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~---------------p~d~ 234 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN---------------PQDS 234 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC---------------CCCH
Confidence 4456778888889999999999999998776677788899999999999999999999753 2234
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 045555 97 FVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMFSQML 154 (175)
Q Consensus 97 ~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (175)
.+...-.+.+.+.++++.|..+.++..+ | +..+|..|..+|...|+++.|+-.++.+-
T Consensus 235 ~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 235 ELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 4455677778999999999999999965 4 67799999999999999999999988774
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=8.8e-07 Score=66.41 Aligned_cols=139 Identities=18% Similarity=0.167 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccC
Q 045555 17 ISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFN 93 (175)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 93 (175)
.|+..+.+.|+-.++.++|...|+...+ .....|+.+.+-|...++...|++-++...+-+ +
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~---------------p 395 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN---------------P 395 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC---------------c
Confidence 3444555666667888888888887664 345678888888999999999998888887742 4
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHhhc--CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHh
Q 045555 94 NDIFVGIALIDMYCKCGDVEKAQRVFWKML--RK-DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLS 170 (175)
Q Consensus 94 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 170 (175)
.|-..|=.|.++|.-.+...=|.-.|++.. +| |...|.+|..+|.+.++.++|.+.|.....-|-. +...+..|-+
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~Lak 474 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAK 474 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHH
Confidence 466677889999999999999999999984 34 8999999999999999999999999999876533 4445554444
Q ss_pred h
Q 045555 171 A 171 (175)
Q Consensus 171 ~ 171 (175)
.
T Consensus 475 L 475 (559)
T KOG1155|consen 475 L 475 (559)
T ss_pred H
Confidence 3
No 39
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.63 E-value=5.2e-08 Score=45.97 Aligned_cols=31 Identities=39% Similarity=0.790 Sum_probs=27.1
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHhHhCCC
Q 045555 48 VLWTAMIDGYLRVNRFREALTLFREMQTSNI 78 (175)
Q Consensus 48 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 78 (175)
++|+++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988774
No 40
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=6.6e-06 Score=62.04 Aligned_cols=169 Identities=18% Similarity=0.184 Sum_probs=120.6
Q ss_pred chHHHHhhccCCCcHHHHHHHHH---HHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 2 GFALEIFGNMKNKDVISWTTIVS---GYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 2 ~~A~~~~~~m~~~~~~~~~~li~---~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
++|.+.+++....|...-.+|.+ .+-..|+.++|++.|-++.. .+..+...+.+.|-...+...|++++.+...
T Consensus 507 dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s 586 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS 586 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc
Confidence 56777777777655544333332 35567888888888876543 4666666777777777778888887766544
Q ss_pred CCCCC-ChHHHHHhhh--------------------ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhh--cCCChhhHHH
Q 045555 76 SNIRR-DEFTTVRILT--------------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM--LRKDKFTWTA 132 (175)
Q Consensus 76 ~~~~p-~~~~~~~l~~--------------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~ 132 (175)
+.| |+...+.+-. .++-+..+...|..-|....-++++...|++. .+|+..-|..
T Consensus 587 --lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwql 664 (840)
T KOG2003|consen 587 --LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQL 664 (840)
T ss_pred --cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 444 4444443333 23445667777888888899999999999986 7899999999
Q ss_pred HHHHHH-hcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhhhc
Q 045555 133 MIVGLA-ISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173 (175)
Q Consensus 133 li~~~~-~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 173 (175)
||..|. +.|++.+|+++|++... .++-|......|+..|.
T Consensus 665 miasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~ 705 (840)
T KOG2003|consen 665 MIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAG 705 (840)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhc
Confidence 986655 79999999999999875 46777777777776653
No 41
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.63 E-value=2.3e-06 Score=71.29 Aligned_cols=153 Identities=10% Similarity=-0.005 Sum_probs=113.5
Q ss_pred chHHHHhhccCC--CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC--CChhHHHHHHHHHhccCChHHHHHHHHHhHhCC
Q 045555 2 GFALEIFGNMKN--KDVISWTTIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 77 (175)
Q Consensus 2 ~~A~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 77 (175)
++|+..+..... |+......+...+.+.|++++|...|+++.. |+...+..+...+.+.|++++|...+++..+.+
T Consensus 493 ~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~ 572 (987)
T PRK09782 493 GVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG 572 (987)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 457775555443 6544433445555689999999999997664 455556777888999999999999999998865
Q ss_pred CCCChH-HHHHhh------h-------------ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHH
Q 045555 78 IRRDEF-TTVRIL------T-------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMI 134 (175)
Q Consensus 78 ~~p~~~-~~~~l~------~-------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li 134 (175)
|+.. .+..+. . ...|+...+..+...+.+.|++++|...++.... | +...++.+.
T Consensus 573 --P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG 650 (987)
T PRK09782 573 --LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALG 650 (987)
T ss_pred --CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3322 121111 1 3456778888889999999999999999998854 4 566778888
Q ss_pred HHHHhcCChhHHHHHHHHHHHC
Q 045555 135 VGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
..+...|++++|.+.|++..+.
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 8899999999999999988864
No 42
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.62 E-value=3e-06 Score=55.17 Aligned_cols=104 Identities=14% Similarity=0.037 Sum_probs=68.5
Q ss_pred HhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHH
Q 045555 38 YFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQR 117 (175)
Q Consensus 38 ~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 117 (175)
+|++..+-+...+..+...+.+.|++++|...|+...... +.+...+..+..++.+.|++++|..
T Consensus 15 ~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---------------P~~~~a~~~lg~~~~~~g~~~~A~~ 79 (144)
T PRK15359 15 ILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQ---------------PWSWRAHIALAGTWMMLKEYTTAIN 79 (144)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------------CCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444333333334556666777777777777777776643 2234445667777777777777777
Q ss_pred HHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 118 VFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 118 ~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
.|+.... | +...+..+..++...|+.++|...|+...+.
T Consensus 80 ~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 80 FYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777744 2 5566777777777777888887777777653
No 43
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.61 E-value=5.2e-06 Score=68.04 Aligned_cols=75 Identities=12% Similarity=0.095 Sum_probs=54.7
Q ss_pred chHHHHhhccCCC---cHH-HHHHHHHHHHhcCChhHHHHHhhcCCC--CC-----hhHHHHHHHHHhccCChHHHHHHH
Q 045555 2 GFALEIFGNMKNK---DVI-SWTTIVSGYINRGQVDIARQYFAQMPE--RD-----YVLWTAMIDGYLRVNRFREALTLF 70 (175)
Q Consensus 2 ~~A~~~~~~m~~~---~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~--~~-----~~~~~~li~~~~~~~~~~~a~~~~ 70 (175)
++|+..|+.+.+. ++. .--.+...|...|++++|...|+++.+ |. ......|..++.+.|++++|.+.+
T Consensus 254 ~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l 333 (765)
T PRK10049 254 KDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVT 333 (765)
T ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 5688888888751 121 222357788999999999999998654 21 234566777888999999999999
Q ss_pred HHhHhC
Q 045555 71 REMQTS 76 (175)
Q Consensus 71 ~~m~~~ 76 (175)
+++...
T Consensus 334 ~~~~~~ 339 (765)
T PRK10049 334 AHTINN 339 (765)
T ss_pred HHHhhc
Confidence 998875
No 44
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.59 E-value=3.5e-06 Score=71.92 Aligned_cols=143 Identities=14% Similarity=0.144 Sum_probs=107.7
Q ss_pred chHHHHhhccCCCcHHHHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCC
Q 045555 2 GFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 78 (175)
Q Consensus 2 ~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 78 (175)
++|.++++.-+ ++...+..+...+.+.|++++|...|+...+ | +...+..+...+...|++++|.+.++...+..
T Consensus 590 ~eA~~~l~~~p-~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~- 667 (1157)
T PRK11447 590 AEAEALLRQQP-PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA- 667 (1157)
T ss_pred HHHHHHHHhCC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-
Confidence 45666666322 3556677888889999999999999998764 3 66788888999999999999999999887642
Q ss_pred CCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC---------ChhhHHHHHHHHHhcCChhHHHHH
Q 045555 79 RRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK---------DKFTWTAMIVGLAISGHGDTALDM 149 (175)
Q Consensus 79 ~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~a~~~ 149 (175)
|+ +...+..+..++.+.|++++|.++++.+... +...+..+...+...|+.++|.+.
T Consensus 668 -p~-------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~ 733 (1157)
T PRK11447 668 -ND-------------SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALET 733 (1157)
T ss_pred -CC-------------ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 22 2233456778888999999999999998542 123566667888899999999999
Q ss_pred HHHHHH-CCCCC
Q 045555 150 FSQMLR-ASIRL 160 (175)
Q Consensus 150 ~~~m~~-~g~~p 160 (175)
|++... .|+.|
T Consensus 734 y~~Al~~~~~~~ 745 (1157)
T PRK11447 734 YKDAMVASGITP 745 (1157)
T ss_pred HHHHHhhcCCCC
Confidence 998864 35544
No 45
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.59 E-value=5.3e-06 Score=67.97 Aligned_cols=153 Identities=10% Similarity=-0.003 Sum_probs=109.3
Q ss_pred chHHHHhhccCC--CcH--HHHHHHHHHHHhcCChhHHHHHhhcCCCCChh-HHHHH--HHHHhccCChHHHHHHHHHhH
Q 045555 2 GFALEIFGNMKN--KDV--ISWTTIVSGYINRGQVDIARQYFAQMPERDYV-LWTAM--IDGYLRVNRFREALTLFREMQ 74 (175)
Q Consensus 2 ~~A~~~~~~m~~--~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~l--i~~~~~~~~~~~a~~~~~~m~ 74 (175)
+.|+..|++..+ |+. ..+ .++..+...|+.++|+.++++...|+.. .+..+ ...+...|++++|+++|+++.
T Consensus 51 ~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL 129 (822)
T PRK14574 51 APVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSL 129 (822)
T ss_pred HHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467888887776 543 234 8889999999999999999999876433 33333 457888899999999999999
Q ss_pred hCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC--ChhhHHHHHHHHHhcCChhHHHHHHHH
Q 045555 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK--DKFTWTAMIVGLAISGHGDTALDMFSQ 152 (175)
Q Consensus 75 ~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~ 152 (175)
+.. |+ +...+..++..|...++.++|.+.++.+... +...+..++..+...++..+|.+.+++
T Consensus 130 ~~d--P~-------------n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 130 KKD--PT-------------NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred hhC--CC-------------CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 864 22 2334457788999999999999999999664 444443333334345666679999999
Q ss_pred HHHCCCCCc-HHHHHHHHhhh
Q 045555 153 MLRASIRLD-EVTYVGVLSAC 172 (175)
Q Consensus 153 m~~~g~~p~-~~t~~~ll~~~ 172 (175)
+.+. .|+ ...+..+..+.
T Consensus 195 ll~~--~P~n~e~~~~~~~~l 213 (822)
T PRK14574 195 AVRL--APTSEEVLKNHLEIL 213 (822)
T ss_pred HHHh--CCCCHHHHHHHHHHH
Confidence 9986 354 44444444443
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.58 E-value=1.8e-06 Score=62.07 Aligned_cols=76 Identities=20% Similarity=0.274 Sum_probs=59.2
Q ss_pred chHHHHhhccCCCcHH---HHHHHHHHHHhcCChhHHHHHhhcCCC-CChh------HHHHHHHHHhccCChHHHHHHHH
Q 045555 2 GFALEIFGNMKNKDVI---SWTTIVSGYINRGQVDIARQYFAQMPE-RDYV------LWTAMIDGYLRVNRFREALTLFR 71 (175)
Q Consensus 2 ~~A~~~~~~m~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~------~~~~li~~~~~~~~~~~a~~~~~ 71 (175)
|+|+.+|-+|.+-|+. +.-+|.+.|-+.|..+.|+.+.+.+.+ ||.. ..-.|..-|...|-++.|..+|.
T Consensus 52 dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~ 131 (389)
T COG2956 52 DKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFN 131 (389)
T ss_pred chHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 7899999999874444 455888999999999999999998765 5432 23445556778888999999999
Q ss_pred HhHhCC
Q 045555 72 EMQTSN 77 (175)
Q Consensus 72 ~m~~~~ 77 (175)
.+.+.|
T Consensus 132 ~L~de~ 137 (389)
T COG2956 132 QLVDEG 137 (389)
T ss_pred HHhcch
Confidence 988855
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.56 E-value=6.3e-06 Score=62.56 Aligned_cols=127 Identities=17% Similarity=0.152 Sum_probs=98.0
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccC
Q 045555 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFN 93 (175)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 93 (175)
.++.....+...+.+.|+.++|..++++..+.....--.++.+.+..++.+++++..++..+.. +
T Consensus 261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~---------------P 325 (398)
T PRK10747 261 HQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQH---------------G 325 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhC---------------C
Confidence 3666777788888888888888888876654222222334455556688888888888887753 2
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHhh--cCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 94 NDIFVGIALIDMYCKCGDVEKAQRVFWKM--LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 94 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
-|......+...+.+.+++++|.+.|+.. ..|+...|..+...+.+.|+.++|.+++++-..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555678999999999999999999999 458888899999999999999999999998754
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.55 E-value=2e-05 Score=60.12 Aligned_cols=171 Identities=16% Similarity=0.168 Sum_probs=119.7
Q ss_pred chHHHHhhccCC--CcH--HHHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhH
Q 045555 2 GFALEIFGNMKN--KDV--ISWTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQ 74 (175)
Q Consensus 2 ~~A~~~~~~m~~--~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (175)
++|.+.+.+..+ |+. ..--.....+.+.|+++.|...++.+.+ | +..+...+...+.+.|+|++|.+.+.++.
T Consensus 135 ~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~ 214 (409)
T TIGR00540 135 ARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMA 214 (409)
T ss_pred HHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 356666666533 443 2334457788889999999999998875 4 66678899999999999999999999999
Q ss_pred hCCCCCChHH-------HHHhhh---------------ccC-----cchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C
Q 045555 75 TSNIRRDEFT-------TVRILT---------------TFN-----NDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K 125 (175)
Q Consensus 75 ~~~~~p~~~~-------~~~l~~---------------~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~ 125 (175)
+.++.++... +...+. .-. .+...+..+...+...|+.++|.+.+++..+ |
T Consensus 215 k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p 294 (409)
T TIGR00540 215 KAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG 294 (409)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Confidence 9875433322 211121 112 2667778888888888888888888877622 1
Q ss_pred -------------------------------------Ch--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHH
Q 045555 126 -------------------------------------DK--FTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYV 166 (175)
Q Consensus 126 -------------------------------------~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 166 (175)
|. ....++...+.+.|++++|.+.|+........||..++.
T Consensus 295 d~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~ 374 (409)
T TIGR00540 295 DDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA 374 (409)
T ss_pred CcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH
Confidence 22 334466777788889999999888544444578887777
Q ss_pred HHHhhh
Q 045555 167 GVLSAC 172 (175)
Q Consensus 167 ~ll~~~ 172 (175)
.+-..+
T Consensus 375 ~La~ll 380 (409)
T TIGR00540 375 MAADAF 380 (409)
T ss_pred HHHHHH
Confidence 665443
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.54 E-value=1.1e-05 Score=59.50 Aligned_cols=148 Identities=14% Similarity=0.099 Sum_probs=117.4
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHhhcCCCC---------------------------------------------Chh
Q 045555 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPER---------------------------------------------DYV 48 (175)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------------------------------------~~~ 48 (175)
.++..-.....+|.+.|++.....+...+.+. +..
T Consensus 185 r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~ 264 (400)
T COG3071 185 RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPE 264 (400)
T ss_pred CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChh
Confidence 46667777788888888888888777776531 233
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhh----------------ccCcchhHHHHHHHHHHhcCCH
Q 045555 49 LWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT----------------TFNNDIFVGIALIDMYCKCGDV 112 (175)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~----------------~~~~~~~~~~~li~~~~~~~~~ 112 (175)
.-..++.-+.+.|+.++|.++..+-.+.+-.|+...+..-+. ..+.+...+.+|...|.+++.|
T Consensus 265 l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w 344 (400)
T COG3071 265 LVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLW 344 (400)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHH
Confidence 445677778999999999999999999988887555544333 3344567888999999999999
Q ss_pred HHHHHHHHhh--cCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc
Q 045555 113 EKAQRVFWKM--LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161 (175)
Q Consensus 113 ~~a~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 161 (175)
.+|...|+.. ..|+..+|+.+.+++.+.|+..+|.+++++-...-.+|+
T Consensus 345 ~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 345 GKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 9999999987 457999999999999999999999999999775444554
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.50 E-value=1.9e-05 Score=60.19 Aligned_cols=154 Identities=13% Similarity=0.069 Sum_probs=109.1
Q ss_pred chHHHHhhccCC--C-cHHHHHHHHHHHHhcCChhHHHHHhhcCCC----------------------------------
Q 045555 2 GFALEIFGNMKN--K-DVISWTTIVSGYINRGQVDIARQYFAQMPE---------------------------------- 44 (175)
Q Consensus 2 ~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---------------------------------- 44 (175)
++|...++.+.+ | +..+...+...+.+.|++++|.+.+..+.+
T Consensus 170 ~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 170 HAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 345566666554 3 555677777777777777776666665441
Q ss_pred -----------CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChH---HHHHhhh-----------------ccC
Q 045555 45 -----------RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEF---TTVRILT-----------------TFN 93 (175)
Q Consensus 45 -----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~l~~-----------------~~~ 93 (175)
.+...+..+...+...|+.++|.+++++..+........ .+..... .-.
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 134456666777888899999999999998864332211 1111111 223
Q ss_pred c-ch--hHHHHHHHHHHhcCCHHHHHHHHHh--h--cCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 94 N-DI--FVGIALIDMYCKCGDVEKAQRVFWK--M--LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 94 ~-~~--~~~~~li~~~~~~~~~~~a~~~~~~--~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
| |. ....++...+.+.|++++|.+.|+. . ..|+...+..+...+.+.|+.++|.+++++-..
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 34 5667899999999999999999993 5 468888899999999999999999999998653
No 51
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.49 E-value=1.1e-06 Score=68.33 Aligned_cols=121 Identities=17% Similarity=0.207 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcc
Q 045555 19 WTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNND 95 (175)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 95 (175)
+..+...|-..|.++.|...|++..+ | -...|+.|.+++-..|+..+|.+.|.+.+... | ..
T Consensus 289 ~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~--p-------------~h 353 (966)
T KOG4626|consen 289 HGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC--P-------------NH 353 (966)
T ss_pred ccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC--C-------------cc
Confidence 33333333344444444444444332 2 23456666666666666666666666665532 1 12
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhhcC--CC-hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 045555 96 IFVGIALIDMYCKCGDVEKAQRVFWKMLR--KD-KFTWTAMIVGLAISGHGDTALDMFSQML 154 (175)
Q Consensus 96 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (175)
....+.|...|.+.|.+++|.++|....+ |+ ....|.+...|-+.|++++|...|++.+
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 22233444455555555555555544422 21 1234444455555555555555555444
No 52
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.48 E-value=4.1e-06 Score=60.76 Aligned_cols=57 Identities=25% Similarity=0.186 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcCC---ChhhHHHHHHHHHhcCCh-hHHHHHHHHHH
Q 045555 98 VGIALIDMYCKCGDVEKAQRVFWKMLRK---DKFTWTAMIVGLAISGHG-DTALDMFSQML 154 (175)
Q Consensus 98 ~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~-~~a~~~~~~m~ 154 (175)
+.|.+..++...|++++|++++.+.... +..+...++......|+. +.+.+.+.++.
T Consensus 203 ~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 203 LLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 3345555555555555555555554332 333444444444444444 33444444444
No 53
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.48 E-value=7.8e-06 Score=63.65 Aligned_cols=147 Identities=14% Similarity=0.113 Sum_probs=113.9
Q ss_pred CchHHHHhhccCCCcHHHH---HHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhH
Q 045555 1 MGFALEIFGNMKNKDVISW---TTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQ 74 (175)
Q Consensus 1 ~~~A~~~~~~m~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (175)
+|.|...|+.....|+..| .-+...|.+.++++.|+-.|+...+ .+.+....+...+-+.|+.++|+.++++..
T Consensus 471 ~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 471 FDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAI 550 (638)
T ss_pred HHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence 3667777777776555544 4567778899999999999988775 367777888888889999999999999988
Q ss_pred hCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHH
Q 045555 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMFS 151 (175)
Q Consensus 75 ~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~ 151 (175)
....+-...-| ..+..+...+++++|...++++++ | +..+|-.+...|.+.|+.+.|..-|-
T Consensus 551 ~ld~kn~l~~~---------------~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~ 615 (638)
T KOG1126|consen 551 HLDPKNPLCKY---------------HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFS 615 (638)
T ss_pred hcCCCCchhHH---------------HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhH
Confidence 76543222222 366777889999999999999954 4 67788999999999999999999998
Q ss_pred HHHHCCCCCcH
Q 045555 152 QMLRASIRLDE 162 (175)
Q Consensus 152 ~m~~~g~~p~~ 162 (175)
-+.+-.-++..
T Consensus 616 ~A~~ldpkg~~ 626 (638)
T KOG1126|consen 616 WALDLDPKGAQ 626 (638)
T ss_pred HHhcCCCccch
Confidence 88775444444
No 54
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.46 E-value=3.5e-05 Score=56.26 Aligned_cols=158 Identities=11% Similarity=0.036 Sum_probs=97.9
Q ss_pred hHHHHhhccCC--C-cHHHHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhHhC
Q 045555 3 FALEIFGNMKN--K-DVISWTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQTS 76 (175)
Q Consensus 3 ~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (175)
+|...|+...+ | +..+|+.+...+.+.|++++|...|+...+ | +..+|..+...+...|++++|++.|++..+.
T Consensus 82 ~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 82 LARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 45555665543 3 567888888888999999999988888754 3 4567788888888889999999999888875
Q ss_pred CCCCChH---HHHHhhh-----------------ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhc---C-------CC
Q 045555 77 NIRRDEF---TTVRILT-----------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML---R-------KD 126 (175)
Q Consensus 77 ~~~p~~~---~~~~l~~-----------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~---~-------~~ 126 (175)
. |+.. .+..+.. ...|+...+ .+.. ...|++..+ ..+..+. + ..
T Consensus 162 ~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~ 235 (296)
T PRK11189 162 D--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERL 235 (296)
T ss_pred C--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHH
Confidence 4 3221 1111111 111111111 1222 223333322 1222221 1 12
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHH
Q 045555 127 KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVG 167 (175)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 167 (175)
...|..+...+.+.|++++|...|++..+.+ .||..-+..
T Consensus 236 ~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~ 275 (296)
T PRK11189 236 CETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRY 275 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHH
Confidence 3568888899999999999999999998654 345444433
No 55
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.45 E-value=9.4e-06 Score=52.83 Aligned_cols=103 Identities=10% Similarity=0.050 Sum_probs=83.8
Q ss_pred HhhccCCCcHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChH
Q 045555 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEF 83 (175)
Q Consensus 7 ~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 83 (175)
+|+...+-++..+......+.+.|++++|...|+.... .+...|..+...+.+.|++++|+..|++..... |
T Consensus 15 ~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~--p--- 89 (144)
T PRK15359 15 ILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD--A--- 89 (144)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--C---
Confidence 34444443454566778889999999999999998764 477789999999999999999999999999854 2
Q ss_pred HHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 84 TTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
.+...+..+..++.+.|++++|...|+...+
T Consensus 90 ----------~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 90 ----------SHPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred ----------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2445557899999999999999999999854
No 56
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.45 E-value=7.9e-06 Score=69.81 Aligned_cols=73 Identities=16% Similarity=0.019 Sum_probs=47.3
Q ss_pred chHHHHhhccCC--C-cHHHHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhH
Q 045555 2 GFALEIFGNMKN--K-DVISWTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQ 74 (175)
Q Consensus 2 ~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (175)
++|++.|++..+ | +...+..+...|.+.|++++|...+++..+ | +...+..+...+.+.+++++|+..++++.
T Consensus 478 ~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~ 556 (1157)
T PRK11447 478 AQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLP 556 (1157)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 466777776654 4 556677788888888888888888887643 3 33334444444555666666666666543
No 57
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.44 E-value=4.7e-05 Score=55.54 Aligned_cols=125 Identities=12% Similarity=-0.043 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhcc
Q 045555 16 VISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTF 92 (175)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 92 (175)
...|..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|.+.|++..+.. |+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~----------- 130 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD--PT----------- 130 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC-----------
Confidence 45688888899999999999999998764 367789999999999999999999999999843 33
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 93 NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--KDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 93 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
+...+..+..++...|++++|.+.|+...+ |+..............++.++|.+.|.+...
T Consensus 131 --~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 131 --YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred --CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 234456788888899999999999999854 3322122222233456789999999977554
No 58
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.42 E-value=7.8e-06 Score=63.77 Aligned_cols=157 Identities=12% Similarity=0.131 Sum_probs=101.7
Q ss_pred chHHHHhhccCC--Cc-HHHHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 2 GFALEIFGNMKN--KD-VISWTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 2 ~~A~~~~~~m~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
|-|+..+++..+ |+ +.+|+.|..++-..|+..+|.+.|++... | ...+.+.|.+.+.+.|.+++|..+|.....
T Consensus 303 dlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~ 382 (966)
T KOG4626|consen 303 DLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE 382 (966)
T ss_pred HHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 456677776664 54 46899999999999999999999998764 3 455788899999999999999999888876
Q ss_pred CCCCCChH-HHH---Hhhh----------------ccCcc-hhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHH
Q 045555 76 SNIRRDEF-TTV---RILT----------------TFNND-IFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWT 131 (175)
Q Consensus 76 ~~~~p~~~-~~~---~l~~----------------~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~ 131 (175)
- -|.-. .++ ++.+ .+.|. ...++.+...|-..|+++.|.+.+...+. | -....+
T Consensus 383 v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhs 460 (966)
T KOG4626|consen 383 V--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHS 460 (966)
T ss_pred h--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHh
Confidence 3 22211 010 0000 22222 33444444445555555555555544432 2 123566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCcH
Q 045555 132 AMIVGLAISGHGDTALDMFSQMLRASIRLDE 162 (175)
Q Consensus 132 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 162 (175)
.+...|-.+|++.+|..-|++.++ ++||.
T Consensus 461 NLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 461 NLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred hHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 777788888888888888888764 46664
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.41 E-value=3.4e-05 Score=55.78 Aligned_cols=161 Identities=14% Similarity=0.197 Sum_probs=112.4
Q ss_pred CchHHHHhhccCC-CcH------HHHHHHHHHHHhcCChhHHHHHhhcCCC-C--ChhHHHHHHHHHhccCChHHHHHHH
Q 045555 1 MGFALEIFGNMKN-KDV------ISWTTIVSGYINRGQVDIARQYFAQMPE-R--DYVLWTAMIDGYLRVNRFREALTLF 70 (175)
Q Consensus 1 ~~~A~~~~~~m~~-~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~-~--~~~~~~~li~~~~~~~~~~~a~~~~ 70 (175)
+|.|+++...+.+ ||. .+--.|..-|...|-+|.|.++|..+.+ + -....-.|+..|-...+|++|+++-
T Consensus 85 vDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A 164 (389)
T COG2956 85 VDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVA 164 (389)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4678888876665 653 3445666778889999999999999887 3 2345778899999999999999999
Q ss_pred HHhHhCCCCCChHHHHH----hhh-------------------ccCc-chhHHHHHHHHHHhcCCHHHHHHHHHhhcCCC
Q 045555 71 REMQTSNIRRDEFTTVR----ILT-------------------TFNN-DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKD 126 (175)
Q Consensus 71 ~~m~~~~~~p~~~~~~~----l~~-------------------~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 126 (175)
+++.+.+..+..+-... +-. ...| .+..-..+.+.+...|+++.|.+.++...+.|
T Consensus 165 ~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn 244 (389)
T COG2956 165 ERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQN 244 (389)
T ss_pred HHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhC
Confidence 99988765544322111 111 1112 22333456667778888888888888886655
Q ss_pred h----hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc
Q 045555 127 K----FTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161 (175)
Q Consensus 127 ~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 161 (175)
. .+...+..+|.+.|+.++....+.++.+..-.++
T Consensus 245 ~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 245 PEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 4 3566778888888998888888888776543333
No 60
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.41 E-value=2e-05 Score=64.72 Aligned_cols=137 Identities=13% Similarity=0.119 Sum_probs=93.1
Q ss_pred chHHHHhhccCC---CcHHHHHHHHHHHHhcCChhHHHHHhhcCC---CCChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 2 GFALEIFGNMKN---KDVISWTTIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 2 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
++|++++..... .+...+..+...+.+.|++++|..+|++.. ..+...+..+...+...|++++|+..+++..+
T Consensus 32 ~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~ 111 (765)
T PRK10049 32 AEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVS 111 (765)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 356666666553 344457777777788888888888888743 23455566777777778888888888888776
Q ss_pred CCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHHH
Q 045555 76 SNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMFSQ 152 (175)
Q Consensus 76 ~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 152 (175)
.. |+ +.. +..+..++...|+.++|...+++..+ | +...+..+...+...|+.++|.+.++.
T Consensus 112 ~~--P~-------------~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 112 GA--PD-------------KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred hC--CC-------------CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 52 21 233 45677778888888888888888744 3 445556667777777788878777765
Q ss_pred HH
Q 045555 153 ML 154 (175)
Q Consensus 153 m~ 154 (175)
..
T Consensus 176 ~~ 177 (765)
T PRK10049 176 AN 177 (765)
T ss_pred CC
Confidence 43
No 61
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.40 E-value=2.2e-05 Score=54.89 Aligned_cols=124 Identities=17% Similarity=0.167 Sum_probs=93.0
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhc
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT 91 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (175)
|...-+..+....+.|++..|...+++... +|...|+.+--+|.+.|++++|..-|.+..+-- |+
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--~~---------- 166 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELA--PN---------- 166 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc--cC----------
Confidence 445556677788888888888888887664 578888888888888888888888888887742 22
Q ss_pred cCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC---CChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 045555 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR---KDKFTWTAMIVGLAISGHGDTALDMFSQM 153 (175)
Q Consensus 92 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m 153 (175)
+....|.+.-.|.-.|+.++|..++..... .|..+-..+.-.....|++++|.++...-
T Consensus 167 ---~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 167 ---EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred ---CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 233446677777788888888888887732 26777777888888888888888776543
No 62
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.39 E-value=2.1e-05 Score=54.02 Aligned_cols=104 Identities=14% Similarity=0.210 Sum_probs=83.0
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHH-HHhcCC--HHHHHHHHHhh
Q 045555 46 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDM-YCKCGD--VEKAQRVFWKM 122 (175)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~-~~~~~~--~~~a~~~~~~~ 122 (175)
|...|..|...|...|++++|...|++..+.. |+ +...+..+..+ +...|+ .++|.+++++.
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~-------------~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~a 136 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLR--GE-------------NAELYAALATVLYYQAGQHMTPQTREMIDKA 136 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC-------------CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 77789999999999999999999999999854 32 34445667765 467777 59999999999
Q ss_pred cC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHH
Q 045555 123 LR--K-DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165 (175)
Q Consensus 123 ~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 165 (175)
.+ | +...+..+...+...|++++|...++++.+. ..|+..-.
T Consensus 137 l~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~ 181 (198)
T PRK10370 137 LALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVNRT 181 (198)
T ss_pred HHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCccHH
Confidence 55 3 6778888999999999999999999999874 34444333
No 63
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.39 E-value=3.2e-05 Score=62.38 Aligned_cols=127 Identities=12% Similarity=0.057 Sum_probs=109.7
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhc
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT 91 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (175)
+..++-.|.....+.|..++|..+++...+ | +......+...+.+.+++++|+..+++..... |+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~---------- 152 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SS---------- 152 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CC----------
Confidence 578888999999999999999999999875 5 56678889999999999999999999999854 33
Q ss_pred cCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK---DKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 92 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
+......+..++.+.|++++|..+|++...+ +...+..+-.++-..|+.++|...|++..+.
T Consensus 153 ---~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 153 ---SAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred ---CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2334467889999999999999999999754 3678888889999999999999999999864
No 64
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.38 E-value=4.7e-05 Score=49.55 Aligned_cols=125 Identities=10% Similarity=0.077 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHhhcCCC--CCh----hHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhh
Q 045555 16 VISWTTIVSGYINRGQVDIARQYFAQMPE--RDY----VLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89 (175)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 89 (175)
...|..++..+ ..++...+...++.+.+ |+. ...-.+...+...|++++|...|+...... |+....
T Consensus 12 ~~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~--~d~~l~---- 84 (145)
T PF09976_consen 12 SALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA--PDPELK---- 84 (145)
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCHHHH----
Confidence 34577777777 48899999888888875 322 223345577889999999999999999976 332211
Q ss_pred hccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC--ChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 045555 90 TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK--DKFTWTAMIVGLAISGHGDTALDMFSQM 153 (175)
Q Consensus 90 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m 153 (175)
....-.|...+...|++++|...++....+ ....+....+.|.+.|++++|...|+..
T Consensus 85 ------~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 85 ------PLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 112235888999999999999999886543 4456777888999999999999999864
No 65
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.37 E-value=1.3e-05 Score=57.91 Aligned_cols=139 Identities=14% Similarity=0.157 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhhcCCCCCh---hHHHHHHHH-HhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhcc
Q 045555 17 ISWTTIVSGYINRGQVDIARQYFAQMPERDY---VLWTAMIDG-YLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTF 92 (175)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 92 (175)
.+|..+|+..-+.+..+.|+.+|.+.++... .+|-..... +...++.+.|..+|+..++. +
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~---------------f 66 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK---------------F 66 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH---------------H
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---------------C
Confidence 5789999999999999999999999886433 333333333 33457788899999999885 2
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHH
Q 045555 93 NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK------DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYV 166 (175)
Q Consensus 93 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 166 (175)
..+...|..-++.+.+.++.+.|..+|+..... ....|...+..-.+.|+++.+.++.+++.+. -|+..++.
T Consensus 67 ~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~ 144 (280)
T PF05843_consen 67 PSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLE 144 (280)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHH
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHH
Confidence 456667788889999999999999999999653 3458999999999999999999999999874 45555555
Q ss_pred HHHhhh
Q 045555 167 GVLSAC 172 (175)
Q Consensus 167 ~ll~~~ 172 (175)
.+++-|
T Consensus 145 ~f~~ry 150 (280)
T PF05843_consen 145 LFSDRY 150 (280)
T ss_dssp HHHCCT
T ss_pred HHHHHh
Confidence 555433
No 66
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.35 E-value=3e-05 Score=49.58 Aligned_cols=108 Identities=15% Similarity=0.114 Sum_probs=84.6
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-
Q 045555 46 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR- 124 (175)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~- 124 (175)
+......+...+.+.|++++|.+.|++....+ +.+...+..+...+.+.|++++|...++....
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD---------------PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC---------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556677788889999999999999988754 22445556889999999999999999998844
Q ss_pred -C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHh
Q 045555 125 -K-DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLS 170 (175)
Q Consensus 125 -~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 170 (175)
| +...+..+...+...|++++|.+.|++..+. .|+...+..+..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 126 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEYSELKE 126 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHHHHHH
Confidence 3 5677888888999999999999999998874 566666554444
No 67
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.35 E-value=8.5e-06 Score=65.59 Aligned_cols=127 Identities=15% Similarity=0.116 Sum_probs=104.0
Q ss_pred CCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhcc----------CcchhHHHHHHHHHHhcCCHH
Q 045555 44 ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTF----------NNDIFVGIALIDMYCKCGDVE 113 (175)
Q Consensus 44 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~----------~~~~~~~~~li~~~~~~~~~~ 113 (175)
.||.+||..+|..||..|+.+.|- +|.-|+-.....+...++.++.+. .|...+|+.|..+|.+.||+.
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~hGDli 100 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIHGDLI 100 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhccchH
Confidence 588899999999999999999998 999998888888888898888842 567889999999999999976
Q ss_pred HHHHHHHhh------------------------------------------------------cC---------------
Q 045555 114 KAQRVFWKM------------------------------------------------------LR--------------- 124 (175)
Q Consensus 114 ~a~~~~~~~------------------------------------------------------~~--------------- 124 (175)
.-+.+=+.+ ..
T Consensus 101 ~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrq 180 (1088)
T KOG4318|consen 101 LFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQ 180 (1088)
T ss_pred HHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHH
Confidence 533332222 00
Q ss_pred ---------------------CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhh
Q 045555 125 ---------------------KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171 (175)
Q Consensus 125 ---------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 171 (175)
++..+|...++.-..+|+++.|..++.+|.++|+.-++.-|..||-+
T Consensus 181 nv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g 248 (1088)
T KOG4318|consen 181 NVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG 248 (1088)
T ss_pred hccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc
Confidence 13346777888888899999999999999999999999988888766
No 68
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.34 E-value=3.6e-05 Score=55.90 Aligned_cols=136 Identities=15% Similarity=0.135 Sum_probs=97.5
Q ss_pred HHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhH
Q 045555 19 WTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFV 98 (175)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 98 (175)
.-.....+...|++++|+++++.- .+.-.....+..|.+.++++.|.+.++.|.+.+ .|.... .+
T Consensus 105 ~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~l~-----------qL 169 (290)
T PF04733_consen 105 QLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDSILT-----------QL 169 (290)
T ss_dssp HHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHHHH-----------HH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHH-----------HH
Confidence 333445567789999999988876 455556778889999999999999999998753 332222 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHh
Q 045555 99 GIALIDMYCKCGDVEKAQRVFWKMLR---KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLS 170 (175)
Q Consensus 99 ~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 170 (175)
..+.+..+.-.+.+.+|.-+|+++.. +++.+.|.+..+....|++++|.+++.+..+.. +-|+.|...++-
T Consensus 170 a~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv 243 (290)
T PF04733_consen 170 AEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIV 243 (290)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHH
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHH
Confidence 34555555555689999999999954 467788888899999999999999999987643 234555555443
No 69
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.33 E-value=1.4e-05 Score=67.05 Aligned_cols=133 Identities=17% Similarity=0.239 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccC
Q 045555 17 ISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFN 93 (175)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 93 (175)
..|..|...|.+.+..++|.++++.|.+ ....+|...+..+.+..+-++|.+++.+.++.=.+...
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH----------- 1599 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH----------- 1599 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh-----------
Confidence 3456666666666666666666666654 24555666666666666666666666666653221111
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcH
Q 045555 94 NDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK---DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162 (175)
Q Consensus 94 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 162 (175)
.....-.+..-.+.|+.+.+..+|+..... -...|+.+|+.-.++|+.+.+.++|++..+.++.|-.
T Consensus 1600 --v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1600 --VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred --HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 223345666667999999999999998542 6789999999999999999999999999999988853
No 70
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.32 E-value=1.2e-05 Score=62.21 Aligned_cols=143 Identities=15% Similarity=0.167 Sum_probs=105.3
Q ss_pred hHHHHhhccCCC----cHHHHHHHHHHHHhcCChhHHHHHhhcCCC----------CChh-HHHHHHHHHhccCChHHHH
Q 045555 3 FALEIFGNMKNK----DVISWTTIVSGYINRGQVDIARQYFAQMPE----------RDYV-LWTAMIDGYLRVNRFREAL 67 (175)
Q Consensus 3 ~A~~~~~~m~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----------~~~~-~~~~li~~~~~~~~~~~a~ 67 (175)
+|+.+++....+ -..+++.|...|.+.|++++|...++...+ +.+. .++.+...|...+++++|.
T Consensus 266 ~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~ 345 (508)
T KOG1840|consen 266 EALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAK 345 (508)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHH
Confidence 344444443332 345688888889999999999988887552 2332 3677788889999999999
Q ss_pred HHHHHhHhCC---CCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC-----------ChhhHHHH
Q 045555 68 TLFREMQTSN---IRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK-----------DKFTWTAM 133 (175)
Q Consensus 68 ~~~~~m~~~~---~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~l 133 (175)
.++.+..+.- +.++.+ .-..+++.|...|-..|++++|+++|++.+.. ....++.+
T Consensus 346 ~l~q~al~i~~~~~g~~~~----------~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~l 415 (508)
T KOG1840|consen 346 KLLQKALKIYLDAPGEDNV----------NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQL 415 (508)
T ss_pred HHHHHHHHHHHhhccccch----------HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHH
Confidence 9999776531 222211 12457789999999999999999999998431 23467889
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 045555 134 IVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~ 155 (175)
...|.+.++..+|.++|.+-..
T Consensus 416 a~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 416 AEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred HHHHHHhcccchHHHHHHHHHH
Confidence 9999999999999999988543
No 71
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.30 E-value=5.5e-05 Score=52.21 Aligned_cols=122 Identities=18% Similarity=0.166 Sum_probs=68.3
Q ss_pred HHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcc
Q 045555 19 WTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNND 95 (175)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 95 (175)
..-+...|.+.|+...|..-+++..+ | +..+|..+...|.+.|+.+.|.+.|++..... | -+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p-------------~~ 102 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA--P-------------NN 102 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--C-------------Cc
Confidence 44455556666666666666666554 2 33455666666666666666666666665532 1 12
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhhcC-C----ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 96 IFVGIALIDMYCKCGDVEKAQRVFWKMLR-K----DKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 96 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
..+.|.-.--+|..|++++|...|+.... | -..+|..+.-+-.++|+.+.|.+.|++-++
T Consensus 103 GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~ 167 (250)
T COG3063 103 GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE 167 (250)
T ss_pred cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence 33344555555666666666666666533 2 234555555555566666666666665554
No 72
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.29 E-value=0.00011 Score=50.77 Aligned_cols=151 Identities=11% Similarity=-0.046 Sum_probs=119.4
Q ss_pred hHHHHhhccCC--C-cHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhC
Q 045555 3 FALEIFGNMKN--K-DVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTS 76 (175)
Q Consensus 3 ~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (175)
.|.+-+++..+ | +..+|..+...|.+.|..+.|.+.|++..+ .+-.+.|..-.-+|..|.+++|..-|++....
T Consensus 53 ~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~ 132 (250)
T COG3063 53 QAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD 132 (250)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC
Confidence 35555555554 3 567899999999999999999999998664 45667888888999999999999999999886
Q ss_pred CCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC---ChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 045555 77 NIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK---DKFTWTAMIVGLAISGHGDTALDMFSQM 153 (175)
Q Consensus 77 ~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m 153 (175)
.--| .-..+|..+.-+..+.|+.+.|++.|+.-.+. ...+.-.+.....+.|++-.|...++..
T Consensus 133 P~Y~-------------~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~ 199 (250)
T COG3063 133 PAYG-------------EPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERY 199 (250)
T ss_pred CCCC-------------CcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHH
Confidence 4211 22345567888889999999999999998553 4557778888899999999999999998
Q ss_pred HHCCCCCcHHHHHH
Q 045555 154 LRASIRLDEVTYVG 167 (175)
Q Consensus 154 ~~~g~~p~~~t~~~ 167 (175)
...|. ++..+.-.
T Consensus 200 ~~~~~-~~A~sL~L 212 (250)
T COG3063 200 QQRGG-AQAESLLL 212 (250)
T ss_pred Hhccc-ccHHHHHH
Confidence 87655 66655443
No 73
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.28 E-value=2.9e-05 Score=54.51 Aligned_cols=56 Identities=16% Similarity=0.109 Sum_probs=47.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhcC--C----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 101 ALIDMYCKCGDVEKAQRVFWKMLR--K----DKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 101 ~li~~~~~~~~~~~a~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
.+...|.+.|++++|...+....+ | ....+..+..++...|++++|.+.++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456778899999999999999854 2 2468889999999999999999999988764
No 74
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.26 E-value=0.00027 Score=52.38 Aligned_cols=157 Identities=17% Similarity=0.219 Sum_probs=121.1
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCC---CCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCCh-------HH
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDE-------FT 84 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~ 84 (175)
+....-+........|+...|..-..++. ..+.........+|.+.|+|.+...++.+|.+.|+--++ .+
T Consensus 152 ~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a 231 (400)
T COG3071 152 TLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQA 231 (400)
T ss_pred hHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHH
Confidence 44556666677777777777777666544 346777899999999999999999999999999864433 25
Q ss_pred HHHhhh--------------------ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC-------------------
Q 045555 85 TVRILT--------------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK------------------- 125 (175)
Q Consensus 85 ~~~l~~--------------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------------------- 125 (175)
|..++. ....++..-.+++.-+.++|+.++|.++.++..+.
T Consensus 232 ~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~ 311 (400)
T COG3071 232 WEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPE 311 (400)
T ss_pred HHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCch
Confidence 555555 23345566678899999999999999998886210
Q ss_pred ---------------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhhhc
Q 045555 126 ---------------DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173 (175)
Q Consensus 126 ---------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 173 (175)
+...+.++...|.+.+.|.+|.+.|+.... ..|+..++..+-+++.
T Consensus 312 ~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~ 372 (400)
T COG3071 312 PLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALD 372 (400)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHH
Confidence 455788899999999999999999997665 5899999998877654
No 75
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.18 E-value=0.00034 Score=49.13 Aligned_cols=131 Identities=16% Similarity=0.167 Sum_probs=104.7
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhc
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT 91 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (175)
|... ..+-..+...|+-+.+..+...... .|......++....+.|++.+|+..+++.....
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-------------- 130 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-------------- 130 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC--------------
Confidence 3344 5566666677777777777666442 255556678999999999999999999998853
Q ss_pred cCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc
Q 045555 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR---KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161 (175)
Q Consensus 92 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 161 (175)
++|...|+.+.-+|-+.|+.++|..-|.+..+ .+....|.+...|.-.|+.+.|..++......+-.+.
T Consensus 131 -p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~ 202 (257)
T COG5010 131 -PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADS 202 (257)
T ss_pred -CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCch
Confidence 56778889999999999999999999999854 3778899999999999999999999999877654433
No 76
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.18 E-value=8.3e-05 Score=51.06 Aligned_cols=96 Identities=15% Similarity=0.184 Sum_probs=80.5
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHH-hccCC--hHHHHHHHHHhHhCCCCCChHHHHH
Q 045555 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGY-LRVNR--FREALTLFREMQTSNIRRDEFTTVR 87 (175)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~-~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~ 87 (175)
.|...|..+...|...|++++|...|++..+ .+...+..+..++ ...|+ .++|.+++++..+.+.
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP--------- 141 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA--------- 141 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC---------
Confidence 4888999999999999999999999998764 3677788887764 67777 5999999999999652
Q ss_pred hhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 88 l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
.+...+..+...+.+.|++++|...|+.+.+
T Consensus 142 ------~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 142 ------NEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred ------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2445557889999999999999999999854
No 77
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.17 E-value=8.9e-05 Score=47.37 Aligned_cols=95 Identities=12% Similarity=0.161 Sum_probs=78.7
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhc
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT 91 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (175)
+......+...+.+.|++++|.+.|+...+ .+...|..+...+.+.|++++|...+++..+.+ |
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p----------- 82 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--P----------- 82 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--C-----------
Confidence 456677888889999999999999998754 366788899999999999999999999988864 2
Q ss_pred cCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 92 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
.+...+..+...|...|++++|...|+...+
T Consensus 83 --~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 83 --DDPRPYFHAAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2333445688899999999999999998854
No 78
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.17 E-value=0.00019 Score=54.43 Aligned_cols=124 Identities=13% Similarity=0.110 Sum_probs=60.2
Q ss_pred hHHHHhhccCC--C-cHHHHHHHHHHHHhcCChhHHHHHhhcCCC--CC-hhHHHHHHHHHhccCChHHHHHHHHHhHhC
Q 045555 3 FALEIFGNMKN--K-DVISWTTIVSGYINRGQVDIARQYFAQMPE--RD-YVLWTAMIDGYLRVNRFREALTLFREMQTS 76 (175)
Q Consensus 3 ~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (175)
+|+..++.+.+ | |+..+......+.+.++.++|.+.++.+.. |+ ...+-.+-.+|.+.|++.+|+.++++....
T Consensus 324 ~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~ 403 (484)
T COG4783 324 EALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN 403 (484)
T ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Confidence 34444444432 3 333344444455555555555555555443 32 233444445555555555555555555544
Q ss_pred CCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 77 NIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 77 ~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
. +.|...|..|..+|.+.|+..++..- .-++|...|+++.|...+....+
T Consensus 404 ~---------------p~dp~~w~~LAqay~~~g~~~~a~~A--------------~AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 404 D---------------PEDPNGWDLLAQAYAELGNRAEALLA--------------RAEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred C---------------CCCchHHHHHHHHHHHhCchHHHHHH--------------HHHHHHhCCCHHHHHHHHHHHHH
Confidence 2 22333445555555555555554322 23344455666666666655554
No 79
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.15 E-value=8.2e-05 Score=43.40 Aligned_cols=93 Identities=18% Similarity=0.238 Sum_probs=74.8
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-
Q 045555 49 LWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K- 125 (175)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~- 125 (175)
++..+...+...|++++|...+++..+.. |+ +...+..+...+...+++++|.+.|+.... |
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~-------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 66 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD--PD-------------NADAYYNLAAAYYKLGKYEEALEDYEKALELDPD 66 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--Cc-------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 35667778888999999999999998753 22 223446788899999999999999998743 2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 126 DKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
+..++..+...+...|++++|.+.+.+..+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 67 NAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 4567888889999999999999999887653
No 80
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.14 E-value=0.00011 Score=55.89 Aligned_cols=116 Identities=12% Similarity=0.116 Sum_probs=81.3
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-
Q 045555 46 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR- 124 (175)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~- 124 (175)
+.....++++.+....+.+++..++.+.+...-.-. ..| .+..++|..|.+.|..+.+..+++.-..
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~----------~~~--~t~ha~vR~~l~~~~~~~~l~~L~n~~~y 132 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSY----------LLP--STHHALVRQCLELGAEDELLELLKNRLQY 132 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCccccc----------ccC--ccHHHHHHHHHhcCCHHHHHHHHhChhhc
Confidence 455566677777777777777777777776521110 011 1224788888888888888888777543
Q ss_pred ---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhhhc
Q 045555 125 ---KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173 (175)
Q Consensus 125 ---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 173 (175)
||..++|.+|+.+.+.|++..|.++..+|..++...++.|+..-+.+|.
T Consensus 133 GiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 133 GIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred ccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 6778888888888888888888888888887777777777777776664
No 81
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.13 E-value=0.00016 Score=59.48 Aligned_cols=157 Identities=11% Similarity=-0.005 Sum_probs=113.9
Q ss_pred chHHHHhhccCCC----cHHHHHHHHHHHHhcCChhHHHHHhhcCCCC---------ChhHHHHHHHHHhccCChHHHHH
Q 045555 2 GFALEIFGNMKNK----DVISWTTIVSGYINRGQVDIARQYFAQMPER---------DYVLWTAMIDGYLRVNRFREALT 68 (175)
Q Consensus 2 ~~A~~~~~~m~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------~~~~~~~li~~~~~~~~~~~a~~ 68 (175)
.+|++-|+.++.+ -..+--++..+|...+.+++|..+|..+..+ +......|..++...+++++|..
T Consensus 309 ~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~ 388 (822)
T PRK14574 309 ADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQ 388 (822)
T ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHH
Confidence 4677777877741 2346778999999999999999999987431 33335789999999999999999
Q ss_pred HHHHhHhCCCCC-ChHHHHHhhhccCcc-hhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCCh
Q 045555 69 LFREMQTSNIRR-DEFTTVRILTTFNND-IFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHG 143 (175)
Q Consensus 69 ~~~~m~~~~~~p-~~~~~~~l~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~ 143 (175)
+++++.+. .| -...+..-....+|| ......++..+...|++.+|++.++++.. | |......+.+.+...|.+
T Consensus 389 ~l~~~~~~--~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p 466 (822)
T PRK14574 389 FAVNYSEQ--TPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLP 466 (822)
T ss_pred HHHHHHhc--CCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 99999874 23 111121111223344 23445667778899999999999999844 4 777888888889999999
Q ss_pred hHHHHHHHHHHHCCCCCcH
Q 045555 144 DTALDMFSQMLRASIRLDE 162 (175)
Q Consensus 144 ~~a~~~~~~m~~~g~~p~~ 162 (175)
.+|.+.++..+.. .|+.
T Consensus 467 ~~A~~~~k~a~~l--~P~~ 483 (822)
T PRK14574 467 RKAEQELKAVESL--APRS 483 (822)
T ss_pred HHHHHHHHHHhhh--CCcc
Confidence 9999999666543 5553
No 82
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.12 E-value=7.4e-05 Score=45.87 Aligned_cols=88 Identities=14% Similarity=0.152 Sum_probs=63.8
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHhCCC-CCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCCh
Q 045555 49 LWTAMIDGYLRVNRFREALTLFREMQTSNI-RRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDK 127 (175)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 127 (175)
|-...|..+...+++.....+|..+++.|+ .|+..+| +.++.+.+++.. |.
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Y--------------n~VL~Si~~R~l--------------D~ 78 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELY--------------NKVLKSIAKREL--------------DS 78 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHH--------------HHHHHHHHHccc--------------cc
Confidence 345567777777999999999999999998 6666666 556666554321 10
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhhhc
Q 045555 128 FTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173 (175)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 173 (175)
..-.+++-..+.+|++|+..+++|+..||+.++..+-
T Consensus 79 ---------~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 79 ---------EDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred ---------hhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 1123356677889999999999999999999988764
No 83
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=0.00055 Score=52.98 Aligned_cols=156 Identities=19% Similarity=0.212 Sum_probs=107.5
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhHhC--C------------
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQTS--N------------ 77 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~------------ 77 (175)
.+.+|-++.-.|.-.|+.++|++.|.+... | -...|-...++|+-.|..+.|+..+...-+. |
T Consensus 311 ~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey 390 (611)
T KOG1173|consen 311 KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEY 390 (611)
T ss_pred CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHH
Confidence 567888888888888999999999987653 2 2234555555555555555555544444332 1
Q ss_pred ------------------CCCCh-HHHHHh--hh-------------------------ccCcchhHHHHHHHHHHhcCC
Q 045555 78 ------------------IRRDE-FTTVRI--LT-------------------------TFNNDIFVGIALIDMYCKCGD 111 (175)
Q Consensus 78 ------------------~~p~~-~~~~~l--~~-------------------------~~~~~~~~~~~li~~~~~~~~ 111 (175)
+.|+. ...+-+ +. ...-...+++.|..+|.+.++
T Consensus 391 ~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 391 MRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred HHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 22211 111000 00 001133468899999999999
Q ss_pred HHHHHHHHHhhcC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhhh
Q 045555 112 VEKAQRVFWKMLR---KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172 (175)
Q Consensus 112 ~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 172 (175)
+++|...|+.... .+..++.++.-.|...|+++.|.+.|++.+ .+.||..+...+|+.+
T Consensus 471 ~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 471 YEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHH
Confidence 9999999999743 488899999999999999999999999977 5789998888888754
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.04 E-value=0.00038 Score=51.85 Aligned_cols=113 Identities=13% Similarity=0.130 Sum_probs=81.4
Q ss_pred cCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHH
Q 045555 29 RGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDM 105 (175)
Q Consensus 29 ~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~ 105 (175)
.+....+.+.+....+ | .......+...+...|++++|...+++..+.. |+ +...+..+...
T Consensus 93 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~-------------~~~~~~~la~i 157 (355)
T cd05804 93 SGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PD-------------DAWAVHAVAHV 157 (355)
T ss_pred ccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC-------------CcHHHHHHHHH
Confidence 4555566666554222 2 23344555667788899999999999988854 22 23445678899
Q ss_pred HHhcCCHHHHHHHHHhhcCC-----C--hhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 106 YCKCGDVEKAQRVFWKMLRK-----D--KFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 106 ~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
|...|++++|.+.+++..+. + ...|-.+...+...|++++|.+.+++....
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 99999999999999987542 2 234567888899999999999999998643
No 85
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.01 E-value=7.7e-05 Score=56.27 Aligned_cols=106 Identities=15% Similarity=0.161 Sum_probs=89.4
Q ss_pred chHHHHhhccCCCcHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCC
Q 045555 2 GFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 78 (175)
Q Consensus 2 ~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 78 (175)
++|+.+|+++.+.++.....+++.+...++-.+|.++.++... .+......-...|.+.++.+.|+.+.++..+..
T Consensus 186 ~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls- 264 (395)
T PF09295_consen 186 DEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELS- 264 (395)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-
Confidence 6799999999987777788899999999999999999998764 355556666777899999999999999999852
Q ss_pred CCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 045555 79 RRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM 122 (175)
Q Consensus 79 ~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 122 (175)
|+ +-.+|..|..+|.+.|+++.|...++.+
T Consensus 265 -P~-------------~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 265 -PS-------------EFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred -ch-------------hHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 22 3457889999999999999999999887
No 86
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.01 E-value=0.00021 Score=53.54 Aligned_cols=102 Identities=10% Similarity=0.042 Sum_probs=82.9
Q ss_pred HHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhH
Q 045555 54 IDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTW 130 (175)
Q Consensus 54 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~ 130 (175)
...+...|++++|++.|++.++.. |+ +...|..+..+|.+.|++++|...++.... | +...|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~--P~-------------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~ 73 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD--PN-------------NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAY 73 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHH
Confidence 456778899999999999999854 22 344556788999999999999999999954 3 56688
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhhh
Q 045555 131 TAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172 (175)
Q Consensus 131 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 172 (175)
..+..+|...|++++|.+.|++.++ +.|+...+...+..|
T Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~al~--l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 74 LRKGTACMKLEEYQTAKAALEKGAS--LAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 8889999999999999999999986 457766666666555
No 87
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.99 E-value=0.00011 Score=42.85 Aligned_cols=92 Identities=20% Similarity=0.258 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCc
Q 045555 18 SWTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN 94 (175)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 94 (175)
++..+...+.+.|++++|...++...+ | +...+..+...+...+++++|...+++..+....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--------------- 66 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD--------------- 66 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc---------------
Confidence 456777888899999999999998754 3 4467888888999999999999999999886421
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 95 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
+..++..+...+...|++++|...+....+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 67 NAKAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 223446788899999999999999987643
No 88
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.99 E-value=0.0013 Score=46.12 Aligned_cols=131 Identities=10% Similarity=0.031 Sum_probs=95.2
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC--CC-h---hHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHH
Q 045555 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPE--RD-Y---VLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVR 87 (175)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~-~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 87 (175)
.....+-.+...+.+.|+++.|...|++..+ |+ . .++..+..++.+.|++++|+..++++.+.........+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~-- 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY-- 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH--
Confidence 3567788888899999999999999998764 32 2 46788889999999999999999999985432111101
Q ss_pred hhhccCcchhHHHHHHHHHHhc--------CCHHHHHHHHHhhcC--CCh-hhH-----------------HHHHHHHHh
Q 045555 88 ILTTFNNDIFVGIALIDMYCKC--------GDVEKAQRVFWKMLR--KDK-FTW-----------------TAMIVGLAI 139 (175)
Q Consensus 88 l~~~~~~~~~~~~~li~~~~~~--------~~~~~a~~~~~~~~~--~~~-~~~-----------------~~li~~~~~ 139 (175)
.+..+..++.+. |++++|.+.|+.... |+. ..+ ..+...+.+
T Consensus 109 ----------a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~ 178 (235)
T TIGR03302 109 ----------AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLK 178 (235)
T ss_pred ----------HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122344444433 789999999999854 322 121 134566788
Q ss_pred cCChhHHHHHHHHHHHC
Q 045555 140 SGHGDTALDMFSQMLRA 156 (175)
Q Consensus 140 ~g~~~~a~~~~~~m~~~ 156 (175)
.|++.+|...+++..+.
T Consensus 179 ~g~~~~A~~~~~~al~~ 195 (235)
T TIGR03302 179 RGAYVAAINRFETVVEN 195 (235)
T ss_pred cCChHHHHHHHHHHHHH
Confidence 99999999999999875
No 89
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.98 E-value=0.00018 Score=52.37 Aligned_cols=131 Identities=15% Similarity=0.107 Sum_probs=104.7
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC--CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhcc
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTF 92 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 92 (175)
|...-+-+.++|.+.|.+.+|...++.-.+ |-+.||-.|-..|.+..++..|+.+|.+-++. -|..+||
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~------- 292 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTY------- 292 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhh-------
Confidence 455557889999999999999999987654 67889999999999999999999999988874 4555555
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 045555 93 NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK---DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160 (175)
Q Consensus 93 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 160 (175)
..-+...+...++.++|.++++...+. ++....++..+|.-.++.+-|.+.|+++++-|+..
T Consensus 293 ------l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s 357 (478)
T KOG1129|consen 293 ------LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS 357 (478)
T ss_pred ------hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC
Confidence 245667778888999999999988553 55566667777888888888898888888887653
No 90
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.98 E-value=0.00041 Score=46.45 Aligned_cols=83 Identities=13% Similarity=0.076 Sum_probs=64.0
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC--CC----hhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHh
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE--RD----YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRI 88 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 88 (175)
+...+..+...+.+.|++++|...|++..+ |+ ...+..+...+.+.|++++|...+.+..+.. |+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~------- 104 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PK------- 104 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cc-------
Confidence 556788888899999999999999998763 22 3578889999999999999999999998853 32
Q ss_pred hhccCcchhHHHHHHHHHHhcCCH
Q 045555 89 LTTFNNDIFVGIALIDMYCKCGDV 112 (175)
Q Consensus 89 ~~~~~~~~~~~~~li~~~~~~~~~ 112 (175)
+...+..+..+|...|+.
T Consensus 105 ------~~~~~~~lg~~~~~~g~~ 122 (172)
T PRK02603 105 ------QPSALNNIAVIYHKRGEK 122 (172)
T ss_pred ------cHHHHHHHHHHHHHcCCh
Confidence 223344566677776663
No 91
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.96 E-value=0.00014 Score=56.47 Aligned_cols=142 Identities=15% Similarity=0.205 Sum_probs=107.2
Q ss_pred chHHHHhhccCC---CcH-HHHHHHHHHHHhcCChhHHHHHhhcCCC-------C-C---hhHHHHHHHHHhccCChHHH
Q 045555 2 GFALEIFGNMKN---KDV-ISWTTIVSGYINRGQVDIARQYFAQMPE-------R-D---YVLWTAMIDGYLRVNRFREA 66 (175)
Q Consensus 2 ~~A~~~~~~m~~---~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~-------~-~---~~~~~~li~~~~~~~~~~~a 66 (175)
++|.++++.... |.+ ...+.+...++..+++++|..+++...+ + + ..+++.|-..|.+.|++++|
T Consensus 307 e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea 386 (508)
T KOG1840|consen 307 ERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEA 386 (508)
T ss_pred HHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHH
Confidence 456666666332 332 3477888889999999999999986542 2 2 35799999999999999999
Q ss_pred HHHHHHhHhCC----CCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhc------CC----ChhhHHH
Q 045555 67 LTLFREMQTSN----IRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML------RK----DKFTWTA 132 (175)
Q Consensus 67 ~~~~~~m~~~~----~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~------~~----~~~~~~~ 132 (175)
.+++++..+.. -.-+.. .....+.+...|.+.+++++|.++|.+-. .| ...+|..
T Consensus 387 ~~~~k~ai~~~~~~~~~~~~~-----------~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~n 455 (508)
T KOG1840|consen 387 EELYKKAIQILRELLGKKDYG-----------VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLN 455 (508)
T ss_pred HHHHHHHHHHHHhcccCcChh-----------hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHH
Confidence 99999987642 111111 12344679999999999999999998862 22 3468999
Q ss_pred HHHHHHhcCChhHHHHHHHHHH
Q 045555 133 MIVGLAISGHGDTALDMFSQML 154 (175)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~ 154 (175)
|...|.+.|++++|.++.+...
T Consensus 456 L~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 456 LAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHcccHHHHHHHHHHHH
Confidence 9999999999999999988775
No 92
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.95 E-value=0.00073 Score=41.84 Aligned_cols=97 Identities=12% Similarity=0.146 Sum_probs=76.5
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C
Q 045555 48 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K 125 (175)
Q Consensus 48 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~ 125 (175)
.++..+...+.+.|++++|...|.++.+.. |+. ......+..+..++.+.|+++.|...|+.... |
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 70 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY--PKS----------TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP 70 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCc----------cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence 356677788899999999999999998753 221 00122334689999999999999999999853 4
Q ss_pred C----hhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 126 D----KFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 126 ~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
+ ...+..+..++.+.|+.++|.+.++++.+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 71 KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 3 356778888899999999999999999986
No 93
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.92 E-value=0.00012 Score=42.95 Aligned_cols=80 Identities=13% Similarity=0.159 Sum_probs=58.8
Q ss_pred cCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhc--CCChhhHHHHHHHH
Q 045555 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML--RKDKFTWTAMIVGL 137 (175)
Q Consensus 60 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~ 137 (175)
.|+++.|+.+++++.+.... + ++...+-.+..+|.+.|++++|..+++... ..+....-.+..++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-~------------~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~ 68 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-N------------PNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCL 68 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-T------------HHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC-C------------hhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 58899999999999986431 1 122233458999999999999999998831 12334455567889
Q ss_pred HhcCChhHHHHHHHH
Q 045555 138 AISGHGDTALDMFSQ 152 (175)
Q Consensus 138 ~~~g~~~~a~~~~~~ 152 (175)
.+.|++++|.+.|++
T Consensus 69 ~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 69 LKLGKYEEAIKALEK 83 (84)
T ss_dssp HHTT-HHHHHHHHHH
T ss_pred HHhCCHHHHHHHHhc
Confidence 999999999999976
No 94
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.87 E-value=0.00042 Score=43.96 Aligned_cols=77 Identities=13% Similarity=0.119 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhh-------------------cCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 96 IFVGIALIDMYCKCGDVEKAQRVFWKM-------------------LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 96 ~~~~~~li~~~~~~~~~~~a~~~~~~~-------------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
..++.++|.++++.|+++....+.+.. ..|+..+..+++.+|+..|++..|.++.+...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 456678999999999999999999876 1257789999999999999999999999999886
Q ss_pred -CCCCcHHHHHHHHhhh
Q 045555 157 -SIRLDEVTYVGVLSAC 172 (175)
Q Consensus 157 -g~~p~~~t~~~ll~~~ 172 (175)
+++-+..++..|++=+
T Consensus 82 Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWA 98 (126)
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 7888899999888643
No 95
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.87 E-value=0.0018 Score=50.85 Aligned_cols=154 Identities=16% Similarity=0.114 Sum_probs=98.1
Q ss_pred chHHHHhhccCC--Cc-HHHHHHHHHHHHhcCChhHHHHHhhcCCC--CChhH-HHHHHHHHhcc-----CChHHHHHHH
Q 045555 2 GFALEIFGNMKN--KD-VISWTTIVSGYINRGQVDIARQYFAQMPE--RDYVL-WTAMIDGYLRV-----NRFREALTLF 70 (175)
Q Consensus 2 ~~A~~~~~~m~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~-~~~li~~~~~~-----~~~~~a~~~~ 70 (175)
++|++.++.-.+ .| ..........+.+.|+.++|..+|..+.+ |+... |..+..+.... .+.+...++|
T Consensus 21 ~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y 100 (517)
T PF12569_consen 21 EEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELY 100 (517)
T ss_pred HHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHH
Confidence 467777766554 44 44566888889999999999999999875 55444 44444444222 2466667777
Q ss_pred HHhHhCCCCCChHHHHH-----------hhh----------------------------------------------c--
Q 045555 71 REMQTSNIRRDEFTTVR-----------ILT----------------------------------------------T-- 91 (175)
Q Consensus 71 ~~m~~~~~~p~~~~~~~-----------l~~----------------------------------------------~-- 91 (175)
+++...-...+..-... .+. .
T Consensus 101 ~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~ 180 (517)
T PF12569_consen 101 DELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFS 180 (517)
T ss_pred HHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCC
Confidence 77755432211111111 110 0
Q ss_pred -------cCcchh--HHHHHHHHHHhcCCHHHHHHHHHhhcC--CC-hhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 92 -------FNNDIF--VGIALIDMYCKCGDVEKAQRVFWKMLR--KD-KFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 92 -------~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
-+|++. ++..+...|-..|++++|.+.++..++ |+ +..|..-.+.+-+.|++.+|.+.+++..+
T Consensus 181 ~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~ 256 (517)
T PF12569_consen 181 NGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARE 256 (517)
T ss_pred CccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 123443 445667788889999999999988755 32 45666777778888888888887777654
No 96
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.85 E-value=0.0013 Score=43.16 Aligned_cols=110 Identities=9% Similarity=-0.042 Sum_probs=80.5
Q ss_pred HHhhcCC-CCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHH
Q 045555 37 QYFAQMP-ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKA 115 (175)
Q Consensus 37 ~~~~~m~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a 115 (175)
..+..+. +.+......+-.-+...|++++|..+|+-+.... |. +..-|-.|.-++...|++++|
T Consensus 24 ~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~-------------~~~y~~gLG~~~Q~~g~~~~A 88 (157)
T PRK15363 24 RMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD--AW-------------SFDYWFRLGECCQAQKHWGEA 88 (157)
T ss_pred HHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc-------------cHHHHHHHHHHHHHHhhHHHH
Confidence 3344455 4455556666777788899999999999888743 32 333456788888899999999
Q ss_pred HHHHHhhc--C-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCc
Q 045555 116 QRVFWKML--R-KDKFTWTAMIVGLAISGHGDTALDMFSQMLRA-SIRLD 161 (175)
Q Consensus 116 ~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~ 161 (175)
...|.... . .|...+-.+..++...|+.+.|.+.|+..+.. +-.|.
T Consensus 89 I~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 89 IYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChh
Confidence 99998873 2 36778888888888999999999999887764 44443
No 97
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.84 E-value=0.00011 Score=59.86 Aligned_cols=139 Identities=13% Similarity=0.202 Sum_probs=91.6
Q ss_pred hHHHHhhccCC---CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC-----CChhHHHHHHHHHhcc------------CC
Q 045555 3 FALEIFGNMKN---KDVISWTTIVSGYINRGQVDIARQYFAQMPE-----RDYVLWTAMIDGYLRV------------NR 62 (175)
Q Consensus 3 ~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~li~~~~~~------------~~ 62 (175)
+|..+++.... .|+.+++.+...+.+...+..|..-|..+.+ +|.++.-.|.+.|.+. +.
T Consensus 548 ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~ 627 (1018)
T KOG2002|consen 548 EASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKH 627 (1018)
T ss_pred HHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHH
Confidence 45555555443 5667777777777777777777775554432 3555555555544332 34
Q ss_pred hHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC---ChhhHHHHHHHHHh
Q 045555 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK---DKFTWTAMIVGLAI 139 (175)
Q Consensus 63 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~ 139 (175)
.++|+++|.+.++.. +-+...-|-+.-.++..|++.+|..+|..+.+. ...+|-.+.++|..
T Consensus 628 ~~KAlq~y~kvL~~d---------------pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e 692 (1018)
T KOG2002|consen 628 QEKALQLYGKVLRND---------------PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVE 692 (1018)
T ss_pred HHHHHHHHHHHHhcC---------------cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHH
Confidence 677788887777753 234445566777777888888888888877653 44677777788888
Q ss_pred cCChhHHHHHHHHHHHC
Q 045555 140 SGHGDTALDMFSQMLRA 156 (175)
Q Consensus 140 ~g~~~~a~~~~~~m~~~ 156 (175)
.|++..|.++|..-...
T Consensus 693 ~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 693 QGQYRLAIQMYENCLKK 709 (1018)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888887766554
No 98
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.84 E-value=0.00023 Score=48.91 Aligned_cols=103 Identities=21% Similarity=0.400 Sum_probs=77.1
Q ss_pred HHhhcc--CCCcHHHHHHHHHHHHhc-----CChhHHHHHhhcCCC----CChhHHHHHHHHHhccC-------------
Q 045555 6 EIFGNM--KNKDVISWTTIVSGYINR-----GQVDIARQYFAQMPE----RDYVLWTAMIDGYLRVN------------- 61 (175)
Q Consensus 6 ~~~~~m--~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~~------------- 61 (175)
..|+.. ..+|-.+|..++..|.+. |..+-....+..|.+ .|..+|+.|++.+-+..
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 445554 447889999999999864 566666666666664 79999999999987643
Q ss_pred ---ChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCH-HHHHHHHHhh
Q 045555 62 ---RFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDV-EKAQRVFWKM 122 (175)
Q Consensus 62 ---~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~ 122 (175)
+.+-|++++++|...|+.||..++ ..+++.+++.+.. .+..++.-.|
T Consensus 115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~--------------~~ll~iFG~~s~p~~K~~rmmYWm 165 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENNGVMPDKETE--------------QMLLNIFGRKSHPMKKYRRMMYWM 165 (228)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCcHHHH--------------HHHHHHhccccHHHHHHHHHHHHH
Confidence 357789999999999998877777 6888888877664 4555555555
No 99
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.83 E-value=0.00022 Score=54.25 Aligned_cols=112 Identities=16% Similarity=0.139 Sum_probs=89.5
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC-C-----ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHh
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE-R-----DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRI 88 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 88 (175)
+......+++.+....+.+++..++...+. | -..|..++++.|.+.|..+.++.++..=...|+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGi---------- 134 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGI---------- 134 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhccc----------
Confidence 666778888888888899999998888774 2 223567999999999999999999999999886
Q ss_pred hhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC----ChhhHHHHHHHHHhc
Q 045555 89 LTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK----DKFTWTAMIVGLAIS 140 (175)
Q Consensus 89 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~ 140 (175)
.||..++|.|++.+.+.|++..|.++...|... +..|+..-+.+|.+-
T Consensus 135 ----F~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 135 ----FPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred ----CCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 455555589999999999999999999998543 455666555555554
No 100
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.83 E-value=8.8e-05 Score=60.40 Aligned_cols=139 Identities=14% Similarity=0.129 Sum_probs=105.1
Q ss_pred CcHHHHHHHHHHHHh------------cCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCC
Q 045555 14 KDVISWTTIVSGYIN------------RGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 78 (175)
Q Consensus 14 ~~~~~~~~li~~~~~------------~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 78 (175)
+|+.+--+|.+.|.+ .+..++|+++|.+... .|...-|.+.-.++..|++.+|..+|.+.+....
T Consensus 598 ~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 598 TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 355555556665543 3556788999887664 3778888888899999999999999999998753
Q ss_pred CCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-----CChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 045555 79 RRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR-----KDKFTWTAMIVGLAISGHGDTALDMFSQM 153 (175)
Q Consensus 79 ~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m 153 (175)
-...+|-.+.++|...|++-.|.++|+...+ .+..+.+.|.+++.+.|++.+|.+.....
T Consensus 678 ---------------~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a 742 (1018)
T KOG2002|consen 678 ---------------DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKA 742 (1018)
T ss_pred ---------------hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 1233556799999999999999999998733 37888999999999999999999998877
Q ss_pred HHCCCCCcHHHHHH
Q 045555 154 LRASIRLDEVTYVG 167 (175)
Q Consensus 154 ~~~g~~p~~~t~~~ 167 (175)
......-...-|+.
T Consensus 743 ~~~~p~~~~v~FN~ 756 (1018)
T KOG2002|consen 743 RHLAPSNTSVKFNL 756 (1018)
T ss_pred HHhCCccchHHhHH
Confidence 76533333334443
No 101
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.83 E-value=0.00088 Score=44.63 Aligned_cols=62 Identities=10% Similarity=-0.020 Sum_probs=52.3
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC--CC----hhHHHHHHHHHhccCChHHHHHHHHHhHhC
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE--RD----YVLWTAMIDGYLRVNRFREALTLFREMQTS 76 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (175)
....|..+...+...|++++|...|+.... ++ ..+|..+...+...|++++|+..+++..+.
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356678888889999999999999998742 22 347889999999999999999999999875
No 102
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.83 E-value=0.00091 Score=54.27 Aligned_cols=119 Identities=8% Similarity=0.047 Sum_probs=95.5
Q ss_pred CchHHHHhhccCC--C-cHHHHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhH
Q 045555 1 MGFALEIFGNMKN--K-DVISWTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQ 74 (175)
Q Consensus 1 ~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (175)
.++|..+++...+ | +......+...+.+.+++++|+..+++... | +....+.+-.++.+.|++++|+++|++..
T Consensus 102 ~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~ 181 (694)
T PRK15179 102 SDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLS 181 (694)
T ss_pred cHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3678888888876 6 455788999999999999999999999875 4 55667888888999999999999999999
Q ss_pred hCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC---CChhhHHHHH
Q 045555 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR---KDKFTWTAMI 134 (175)
Q Consensus 75 ~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li 134 (175)
..+. + +...+..+..++-+.|+.++|...|+...+ +...-|+.++
T Consensus 182 ~~~p--~-------------~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 182 RQHP--E-------------FENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred hcCC--C-------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 8442 1 244556799999999999999999999844 4555555443
No 103
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.80 E-value=2.5e-05 Score=45.89 Aligned_cols=77 Identities=18% Similarity=0.310 Sum_probs=48.5
Q ss_pred cCChhHHHHHhhcCCC--C---ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHH
Q 045555 29 RGQVDIARQYFAQMPE--R---DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALI 103 (175)
Q Consensus 29 ~~~~~~a~~~~~~m~~--~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li 103 (175)
.|+++.|..+|+++.+ | +...+..+..++.+.|++++|+.++++ .+.+ |+ +....-.+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~-------------~~~~~~l~a 65 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PS-------------NPDIHYLLA 65 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HC-------------HHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CC-------------CHHHHHHHH
Confidence 4677788888887763 3 233455577888888888888888877 2221 11 111222457
Q ss_pred HHHHhcCCHHHHHHHHHh
Q 045555 104 DMYCKCGDVEKAQRVFWK 121 (175)
Q Consensus 104 ~~~~~~~~~~~a~~~~~~ 121 (175)
.+|.+.|++++|.+++++
T Consensus 66 ~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHTT-HHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhc
Confidence 778888888888887764
No 104
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.78 E-value=0.00034 Score=51.00 Aligned_cols=138 Identities=12% Similarity=0.025 Sum_probs=84.4
Q ss_pred hHHHHhhccCC--CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC--CChhH-HHHHHHHHhccCChHHHHHHHHHhHhCC
Q 045555 3 FALEIFGNMKN--KDVISWTTIVSGYINRGQVDIARQYFAQMPE--RDYVL-WTAMIDGYLRVNRFREALTLFREMQTSN 77 (175)
Q Consensus 3 ~A~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~ 77 (175)
+|.+-|+.-.+ |-+.+|-.|-+.|.+..++..|+.+|.+-.+ |..+| ...+.+.+-..++.++|.++|+...+..
T Consensus 241 ~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~ 320 (478)
T KOG1129|consen 241 RAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH 320 (478)
T ss_pred hhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 45555554432 7888999999999999999999999998775 54444 3455556666788888888888887753
Q ss_pred CCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC---CChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 045555 78 IRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR---KDKFTWTAMIVGLAISGHGDTALDMFSQML 154 (175)
Q Consensus 78 ~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (175)
. .++.....+...|.-.++.+.|.+.+..+.. .+...|+.+.-+|...++++-++.-|.+.+
T Consensus 321 ~---------------~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAl 385 (478)
T KOG1129|consen 321 P---------------INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRAL 385 (478)
T ss_pred C---------------ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHH
Confidence 1 1111122334444555555555555555432 244455555555555555555555554444
Q ss_pred H
Q 045555 155 R 155 (175)
Q Consensus 155 ~ 155 (175)
.
T Consensus 386 s 386 (478)
T KOG1129|consen 386 S 386 (478)
T ss_pred h
Confidence 3
No 105
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.73 E-value=0.00093 Score=43.76 Aligned_cols=96 Identities=13% Similarity=0.167 Sum_probs=77.9
Q ss_pred CCcHHHHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhh
Q 045555 13 NKDVISWTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89 (175)
Q Consensus 13 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 89 (175)
..+....-.+...+.+.|++++|..+|+.+.. | +..-|..|-.++-..|++++|+..|.......+ |
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~--d-------- 101 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI--D-------- 101 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--C--------
Confidence 34555666777788899999999999998764 4 666788999999999999999999999988653 2
Q ss_pred hccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 045555 90 TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123 (175)
Q Consensus 90 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 123 (175)
|...+-.+..++...|+.+.|.+.|+..+
T Consensus 102 -----dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 102 -----APQAPWAAAECYLACDNVCYAIKALKAVV 130 (157)
T ss_pred -----CchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 23333468999999999999999998764
No 106
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.72 E-value=0.00066 Score=54.04 Aligned_cols=148 Identities=18% Similarity=0.174 Sum_probs=105.1
Q ss_pred hHHHHhhccCCCcHHHHHHHHHHHHhcCChhHHHHHhhcCCC--CChhHHHHHHHHHhccCChHHHHHHHHHhHhC----
Q 045555 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALTLFREMQTS---- 76 (175)
Q Consensus 3 ~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---- 76 (175)
+|..+|+.. ..|..+|.+|...|+..+|..+..+..+ ||..-|..+.+......-+++|.+++++.-..
T Consensus 416 sAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~ 490 (777)
T KOG1128|consen 416 SALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRS 490 (777)
T ss_pred HHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHh
Confidence 344444443 3788889999999988888888776654 67778888888887777788888888776332
Q ss_pred -CCCC-ChHHHHHhhh----------------------------------------ccCcc-hhHHHHHHHHHHhcCCHH
Q 045555 77 -NIRR-DEFTTVRILT----------------------------------------TFNND-IFVGIALIDMYCKCGDVE 113 (175)
Q Consensus 77 -~~~p-~~~~~~~l~~----------------------------------------~~~~~-~~~~~~li~~~~~~~~~~ 113 (175)
|..+ +...|....+ ...|| ...||.+-.+|.+.|+-.
T Consensus 491 ~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ 570 (777)
T KOG1128|consen 491 LALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKK 570 (777)
T ss_pred hccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhH
Confidence 1101 1111222222 23344 567899999999999999
Q ss_pred HHHHHHHhhcCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 114 KAQRVFWKMLRK---DKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 114 ~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
+|...+++..+- +...|...+....+-|.+++|.+.+.++.+
T Consensus 571 ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 571 RAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 999999888653 556777888888889999999999888765
No 107
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.0015 Score=46.31 Aligned_cols=121 Identities=15% Similarity=0.160 Sum_probs=64.1
Q ss_pred HHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHH
Q 045555 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGI 100 (175)
Q Consensus 21 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 100 (175)
.-...|+..|++++|.........-+... .=...+.+..+++-|...+++|.+-. +..|.+. .-+
T Consensus 113 ~aa~i~~~~~~~deAl~~~~~~~~lE~~A--l~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQ----------LA~ 177 (299)
T KOG3081|consen 113 LAAIIYMHDGDFDEALKALHLGENLEAAA--LNVQILLKMHRFDLAEKELKKMQQID---EDATLTQ----------LAQ 177 (299)
T ss_pred HhhHHhhcCCChHHHHHHHhccchHHHHH--HHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHH----------HHH
Confidence 33445677777777777777622222222 22333455666666776667766532 1111211 112
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhcC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 101 ALIDMYCKCGDVEKAQRVFWKMLR---KDKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 101 ~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
+.+......+.+.+|.-+|++|.+ |+.-+.+-...++...|++++|..++++.+++
T Consensus 178 awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 178 AWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 344444445556666666666644 34444445555555666666666666666654
No 108
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.70 E-value=0.0021 Score=49.25 Aligned_cols=138 Identities=14% Similarity=0.194 Sum_probs=96.5
Q ss_pred chHHHHhhccCC---CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 2 GFALEIFGNMKN---KDVISWTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 2 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
..|+++|+.... .+...|-.-+.+=.+...+.+|+.+|+.... | =...|...+..=-..|+...|..+|+....
T Consensus 90 ~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~ 169 (677)
T KOG1915|consen 90 QRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWME 169 (677)
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHc
Confidence 357777776654 5666777777777888888899998887654 2 223466666666677889999999998887
Q ss_pred CCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhh--cCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 045555 76 SNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM--LRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153 (175)
Q Consensus 76 ~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 153 (175)
- .|+...|++.|+--.+-+.++.|..+++.. ..|++.+|--...---++|+...|..+|...
T Consensus 170 w----------------~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 170 W----------------EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred C----------------CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3 455555566777777777777777777765 4567777766666666777777777766665
Q ss_pred HH
Q 045555 154 LR 155 (175)
Q Consensus 154 ~~ 155 (175)
.+
T Consensus 234 ie 235 (677)
T KOG1915|consen 234 IE 235 (677)
T ss_pred HH
Confidence 54
No 109
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.69 E-value=0.0012 Score=45.53 Aligned_cols=111 Identities=17% Similarity=0.260 Sum_probs=73.7
Q ss_pred HHHHhhcC--CCCChhHHHHHHHHHhcc-----CChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHH
Q 045555 35 ARQYFAQM--PERDYVLWTAMIDGYLRV-----NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYC 107 (175)
Q Consensus 35 a~~~~~~m--~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~ 107 (175)
....|+.. ..+|..+|..++..|.+. |..+=....+..|.+-|+.-|..+| +.|++.+=
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y--------------~~LLDvFP 98 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVY--------------KALLDVFP 98 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHH--------------HHHHHhCC
Confidence 34555555 456888888888888655 6788888888999999986666666 56666665
Q ss_pred hcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhhhcC
Q 045555 108 KCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174 (175)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 174 (175)
+ |.+- -..+| .++.-.| -.+.+-|.+++++|.+.|+-||..|+..|++.+.+
T Consensus 99 K-g~fv-p~n~f-----------Q~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 99 K-GKFV-PRNFF-----------QAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred C-CCcc-cccHH-----------HHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 4 2221 11111 1222222 22456788888888888888888888888887654
No 110
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.68 E-value=0.00048 Score=38.41 Aligned_cols=50 Identities=20% Similarity=0.360 Sum_probs=27.8
Q ss_pred ccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 045555 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123 (175)
Q Consensus 59 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 123 (175)
+.|++++|++.|+++..... .+...+..+..+|.+.|++++|.++++.+.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p---------------~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNP---------------DNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTT---------------TSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHHCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666666666666665431 123333456666666666666666666663
No 111
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.67 E-value=0.0034 Score=46.32 Aligned_cols=109 Identities=15% Similarity=0.124 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchh
Q 045555 18 SWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIF 97 (175)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 97 (175)
+.+..|.-+...|....|..+-.+.+-|+..-|-..+.+++..++|++-..+... +++ +..|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s-kKs-----PIGy------------ 240 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS-KKS-----PIGY------------ 240 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-CCC-----CCCh------------
Confidence 4566677788899999999999999999999999999999999999887776432 221 2223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 045555 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152 (175)
Q Consensus 98 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 152 (175)
-..+++|.+.|...+|..+... ..+..-+..|.+.|++.+|.+.-.+
T Consensus 241 --epFv~~~~~~~~~~eA~~yI~k------~~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 241 --EPFVEACLKYGNKKEASKYIPK------IPDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred --HHHHHHHHHCCCHHHHHHHHHh------CChHHHHHHHHHCCCHHHHHHHHHH
Confidence 5688999999999999998887 3357888999999999999766433
No 112
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.66 E-value=0.002 Score=49.17 Aligned_cols=116 Identities=18% Similarity=0.171 Sum_probs=91.3
Q ss_pred HHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHH
Q 045555 25 GYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIA 101 (175)
Q Consensus 25 ~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~ 101 (175)
.+.+.|.++.|+..++.+.. | |..-+......+.+.++.++|.+.++.+.... |+. ....-.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~-------------~~l~~~ 379 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNS-------------PLLQLN 379 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCc-------------cHHHHH
Confidence 34467888888888887653 4 55666677778899999999999999998853 321 333457
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 102 LIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 102 li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
+..+|.+.|++.+|.+.++.... | |...|..+-.+|...|+..++.....|...
T Consensus 380 ~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 88999999999999999998844 2 788999999999999999999988887764
No 113
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.65 E-value=0.00032 Score=39.18 Aligned_cols=61 Identities=21% Similarity=0.272 Sum_probs=50.0
Q ss_pred HhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHH
Q 045555 107 CKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVL 169 (175)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 169 (175)
.+.|++++|.+.|+.+.. | +...+-.+..+|.+.|++++|.++++++... .|+...+..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 468999999999999943 4 7778888999999999999999999999875 67766665554
No 114
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.63 E-value=0.0076 Score=49.25 Aligned_cols=153 Identities=18% Similarity=0.227 Sum_probs=99.1
Q ss_pred chHHHHhhccCC---CcHHHHHHHHHHHHhcCChhHHHHHhhcCC---CCChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 2 GFALEIFGNMKN---KDVISWTTIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 2 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
++|.+++.+..+ .+...|..|...|-+.|+.+++...+-... +.|..-|..+-.-..+.|+++.|.-.|.+..+
T Consensus 156 eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~ 235 (895)
T KOG2076|consen 156 EEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQ 235 (895)
T ss_pred HHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 567778877776 356678888888888888888877665433 34666777777777888888888888888877
Q ss_pred CCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCCh--------hhHHHHHHHHHhcCChhHHH
Q 045555 76 SNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDK--------FTWTAMIVGLAISGHGDTAL 147 (175)
Q Consensus 76 ~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~a~ 147 (175)
... ++....--=++.|-+.|+...|.+.|..+...+. ..--.+++.+...++-+.|.
T Consensus 236 ~~p---------------~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 236 ANP---------------SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred cCC---------------cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 642 2222223456677788888888888877744322 11222445566666667777
Q ss_pred HHHHHHHHCC----CCCcHHHHHHHH
Q 045555 148 DMFSQMLRAS----IRLDEVTYVGVL 169 (175)
Q Consensus 148 ~~~~~m~~~g----~~p~~~t~~~ll 169 (175)
+.+......+ --||..++..|+
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~ 326 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELF 326 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHH
Confidence 7776665521 224555554444
No 115
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.63 E-value=0.0015 Score=49.00 Aligned_cols=87 Identities=10% Similarity=0.055 Sum_probs=72.6
Q ss_pred HHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHH
Q 045555 23 VSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVG 99 (175)
Q Consensus 23 i~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 99 (175)
...+...|++++|.+.|.+..+ .+...|..+..+|.+.|++++|+..+++.++.. | .+...|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P-------------~~~~a~ 73 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD--P-------------SLAKAY 73 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--c-------------CCHHHH
Confidence 4556688999999999998874 366788899999999999999999999998854 2 234455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 100 IALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 100 ~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
..+..+|...|++++|...|+...+
T Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~al~ 98 (356)
T PLN03088 74 LRKGTACMKLEEYQTAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6788999999999999999999854
No 116
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.62 E-value=0.0012 Score=40.76 Aligned_cols=96 Identities=14% Similarity=0.086 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhhcCCC--CC----hhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhh
Q 045555 17 ISWTTIVSGYINRGQVDIARQYFAQMPE--RD----YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT 90 (175)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 90 (175)
.++......+.+.|++++|.+.|..+.+ |+ ...+..+...+.+.|++++|...|+++........
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~--------- 73 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP--------- 73 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC---------
Confidence 4566778888999999999999999864 33 34577789999999999999999999987532110
Q ss_pred ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 91 TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 91 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
.....+..+..++.+.|+.++|.+.++...+
T Consensus 74 ---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 74 ---KAPDALLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred ---cccHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 0122345688889999999999999999854
No 117
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.62 E-value=0.0058 Score=48.05 Aligned_cols=123 Identities=18% Similarity=0.225 Sum_probs=97.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhcCCC--CC-hhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCc
Q 045555 18 SWTTIVSGYINRGQVDIARQYFAQMPE--RD-YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN 94 (175)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 94 (175)
++.-+...|-..|++++|+++.+...+ |+ +-.|..-...+-+.|++.+|.+..++.+... .-
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD---------------~~ 260 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD---------------LA 260 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC---------------hh
Confidence 345556778899999999999998775 54 3467788888999999999999999998865 23
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChh----------hH--HHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF----------TW--TAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 95 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----------~~--~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
|..+-+-.+..+.|.|++++|.+++..-.+++.. .| .-...+|.+.|++..|++-|....+
T Consensus 261 DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 261 DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5566678889999999999999999988665421 22 3456789999999999887776654
No 118
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.0053 Score=47.80 Aligned_cols=157 Identities=15% Similarity=0.163 Sum_probs=118.5
Q ss_pred hHHHHhhccCC--C-cHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhC
Q 045555 3 FALEIFGNMKN--K-DVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTS 76 (175)
Q Consensus 3 ~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (175)
+|.-.|+.-.+ | +..+|..|...-...++=..|+.-+++..+ .|....-.|.-+|...|.-..|+..+++..+.
T Consensus 303 ~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~ 382 (579)
T KOG1125|consen 303 EAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRN 382 (579)
T ss_pred HHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 44555554443 3 567888888888888887888888887665 36777888888999999999999999999554
Q ss_pred CC------C-------------CChHHHHHhhh---------ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhh--cCC-
Q 045555 77 NI------R-------------RDEFTTVRILT---------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM--LRK- 125 (175)
Q Consensus 77 ~~------~-------------p~~~~~~~l~~---------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~--~~~- 125 (175)
.. . ++...+..+.. +-.+|..+...|.-.|--.|+++.|..+|+.. ++|
T Consensus 383 ~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn 462 (579)
T KOG1125|consen 383 KPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN 462 (579)
T ss_pred CccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc
Confidence 31 0 12222222222 33467888888999999999999999999998 445
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc
Q 045555 126 DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161 (175)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 161 (175)
|...||-|...++...+.++|+..|++.++ ++|+
T Consensus 463 d~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~ 496 (579)
T KOG1125|consen 463 DYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPG 496 (579)
T ss_pred hHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCC
Confidence 788999999999999999999999999886 3554
No 119
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.61 E-value=0.00071 Score=43.95 Aligned_cols=70 Identities=21% Similarity=0.255 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHH-----HCCCCCcHHHHHH
Q 045555 98 VGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMFSQML-----RASIRLDEVTYVG 167 (175)
Q Consensus 98 ~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~~t~~~ 167 (175)
....++..+...|++++|.+....... | +...|..+|.+|...|+...|.+.|+++. +-|+.|+..|-..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l 141 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRAL 141 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHH
Confidence 445678888899999999999999954 4 77899999999999999999999998874 3499999877543
No 120
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.60 E-value=0.004 Score=47.58 Aligned_cols=143 Identities=17% Similarity=0.237 Sum_probs=104.3
Q ss_pred cCChhHHHHHhhcCCCCChhHHHHHHHH---HhccCChHHHHHHHHHhHhCCCCCChHHHHHhhh---------------
Q 045555 29 RGQVDIARQYFAQMPERDYVLWTAMIDG---YLRVNRFREALTLFREMQTSNIRRDEFTTVRILT--------------- 90 (175)
Q Consensus 29 ~~~~~~a~~~~~~m~~~~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~--------------- 90 (175)
.|++++|.+.|.+....|...-..|.+. +-..|++++|++.|-++..- +.-+......+-.
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 5788888888888777666544444332 55678899999888776431 0111111111111
Q ss_pred -----ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcH
Q 045555 91 -----TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR---KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162 (175)
Q Consensus 91 -----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 162 (175)
-++.|+.+.+-|.+.|-+.|+-..|.+++-+--+ -++.+..++...|....-+++|...|++.. -+.|++
T Consensus 582 ~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~ 659 (840)
T KOG2003|consen 582 MQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQ 659 (840)
T ss_pred HHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccH
Confidence 4566788899999999999999999998877532 388888999999998889999999998865 478999
Q ss_pred HHHHHHHhhhcC
Q 045555 163 VTYVGVLSACTH 174 (175)
Q Consensus 163 ~t~~~ll~~~~~ 174 (175)
.-|..++..|-|
T Consensus 660 ~kwqlmiasc~r 671 (840)
T KOG2003|consen 660 SKWQLMIASCFR 671 (840)
T ss_pred HHHHHHHHHHHH
Confidence 999999988854
No 121
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.60 E-value=0.00076 Score=43.86 Aligned_cols=87 Identities=17% Similarity=0.234 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCChhHHHHHhhcCCC--CCh----hHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhcc
Q 045555 19 WTTIVSGYINRGQVDIARQYFAQMPE--RDY----VLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTF 92 (175)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~--~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 92 (175)
.-.+...+...|++++|...|+.... |+. .....|...+...|++++|+..++......
T Consensus 51 ~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~--------------- 115 (145)
T PF09976_consen 51 ALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEA--------------- 115 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcc---------------
Confidence 33455778889999999999998775 332 245567788899999999999997743322
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 045555 93 NNDIFVGIALIDMYCKCGDVEKAQRVFWK 121 (175)
Q Consensus 93 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 121 (175)
.....+....+.|.+.|++++|...|+.
T Consensus 116 -~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 116 -FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred -hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 1233446799999999999999999975
No 122
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.59 E-value=0.00044 Score=38.25 Aligned_cols=55 Identities=24% Similarity=0.310 Sum_probs=47.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 102 LIDMYCKCGDVEKAQRVFWKMLRK---DKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 102 li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
+...+.+.|++++|.+.|+...+. +...|..+..++...|++++|...|+++++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 556788999999999999999664 5667888999999999999999999999864
No 123
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.00091 Score=51.17 Aligned_cols=122 Identities=10% Similarity=0.151 Sum_probs=96.9
Q ss_pred HHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcc
Q 045555 19 WTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNND 95 (175)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 95 (175)
|--+...|....+.++....|+.... .|..+|..-...+.-.+++++|+.=|++..... |+ +
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~--pe-------------~ 427 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD--PE-------------N 427 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC--hh-------------h
Confidence 77777788888888888888887664 366677777777777888899998888887743 22 2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 96 IFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 96 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
...|.-+.-+.-|.+++++++..|++.++ | -+.+|+-....+...+++++|.+.|+..++
T Consensus 428 ~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 428 AYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 33444556666688899999999999966 3 577999999999999999999999998765
No 124
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.54 E-value=0.0013 Score=41.80 Aligned_cols=89 Identities=15% Similarity=0.128 Sum_probs=67.3
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHhHhCC---------CCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHH
Q 045555 46 DYVLWTAMIDGYLRVNRFREALTLFREMQTSN---------IRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQ 116 (175)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---------~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~ 116 (175)
|..++.++|.++++.|+.+....+++..-.-+ +.|+. ...|+..+..+++.+|+.+|++..|.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~s--------pl~Pt~~lL~AIv~sf~~n~~i~~al 72 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSS--------PLYPTSRLLIAIVHSFGYNGDIFSAL 72 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCC--------CCCCCHHHHHHHHHHHHhcccHHHHH
Confidence 45678888889999999888888887664322 22222 23589999999999999999999999
Q ss_pred HHHHhhcCC-----ChhhHHHHHHHHHhcCC
Q 045555 117 RVFWKMLRK-----DKFTWTAMIVGLAISGH 142 (175)
Q Consensus 117 ~~~~~~~~~-----~~~~~~~li~~~~~~g~ 142 (175)
++.+...+. +..+|..|+......-+
T Consensus 73 ~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 73 KLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 999998442 56789999886654433
No 125
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.54 E-value=0.0066 Score=40.63 Aligned_cols=98 Identities=15% Similarity=0.174 Sum_probs=72.9
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-
Q 045555 46 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR- 124 (175)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~- 124 (175)
....+..+...+...|++++|...|++..+.+..+.. ....+..+...+.+.|++++|...+.+...
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND------------RSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556888888899999999999999999875432221 123456899999999999999999999854
Q ss_pred -C-ChhhHHHHHHHHHhcCC--------------hhHHHHHHHHHHH
Q 045555 125 -K-DKFTWTAMIVGLAISGH--------------GDTALDMFSQMLR 155 (175)
Q Consensus 125 -~-~~~~~~~li~~~~~~g~--------------~~~a~~~~~~m~~ 155 (175)
| +...+..+...+...|+ +++|.+.+++...
T Consensus 102 ~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 102 NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 3 55667777777777776 4556666666554
No 126
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.54 E-value=0.0008 Score=41.41 Aligned_cols=72 Identities=8% Similarity=0.271 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhcCCC-----CChhHHHHHHHHHhccC--------ChHHHHHHHHHhHhCCCCCChHH
Q 045555 18 SWTTIVSGYINRGQVDIARQYFAQMPE-----RDYVLWTAMIDGYLRVN--------RFREALTLFREMQTSNIRRDEFT 84 (175)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~~~~p~~~~ 84 (175)
+-...|..+...+++...-.+|+.+++ |++.+|+.++.+.++.. ...+.+.+|.+|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344566667777999999999998875 78889999999987763 35678899999999999888888
Q ss_pred HHHhh
Q 045555 85 TVRIL 89 (175)
Q Consensus 85 ~~~l~ 89 (175)
|+.++
T Consensus 107 Ynivl 111 (120)
T PF08579_consen 107 YNIVL 111 (120)
T ss_pred HHHHH
Confidence 85544
No 127
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.53 E-value=0.0078 Score=40.06 Aligned_cols=95 Identities=16% Similarity=0.092 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--
Q 045555 47 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR-- 124 (175)
Q Consensus 47 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-- 124 (175)
...|..+...+...|++++|+..|++.......|.. ...++..+...|...|++++|...++....
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~------------~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~ 102 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD------------RSYILYNIGLIHTSNGEHTKALEYYFQALERN 102 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 456788888888999999999999999875322211 123557899999999999999999999854
Q ss_pred C-ChhhHHHHHHHHH-------hcCChhHHHHHHHHH
Q 045555 125 K-DKFTWTAMIVGLA-------ISGHGDTALDMFSQM 153 (175)
Q Consensus 125 ~-~~~~~~~li~~~~-------~~g~~~~a~~~~~~m 153 (175)
| ....+..+...+. ..|+++.|...+++.
T Consensus 103 ~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 103 PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 2 3455666666666 788888666555543
No 128
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.016 Score=41.20 Aligned_cols=137 Identities=16% Similarity=0.134 Sum_probs=96.7
Q ss_pred chHHHHhhccCCCcHHHHHHHHHHHHhcCChhHHHHHhhcCCCC-ChhHHHHHHHHHh----ccCChHHHHHHHHHhHhC
Q 045555 2 GFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER-DYVLWTAMIDGYL----RVNRFREALTLFREMQTS 76 (175)
Q Consensus 2 ~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~ 76 (175)
++|++..+.. -+..+...-...+.+..+++.|.+.+++|.+- +..|.+-|..++. ..+...+|.-+|++|-+.
T Consensus 125 deAl~~~~~~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k 202 (299)
T KOG3081|consen 125 DEALKALHLG--ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK 202 (299)
T ss_pred HHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc
Confidence 4555555552 34555555566778899999999999999984 4455665655554 446799999999999875
Q ss_pred CCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC---ChhhHHHHHHHHHhcCChhH-HHHHHHH
Q 045555 77 NIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK---DKFTWTAMIVGLAISGHGDT-ALDMFSQ 152 (175)
Q Consensus 77 ~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~-a~~~~~~ 152 (175)
+.|++.+.|-...++...|++++|+.+++....+ +..+...+|.+--..|+-.+ -.+.+.+
T Consensus 203 ---------------~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 203 ---------------TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred ---------------cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 2455555578888999999999999999999654 55566556655556665544 4555666
Q ss_pred HHH
Q 045555 153 MLR 155 (175)
Q Consensus 153 m~~ 155 (175)
+..
T Consensus 268 Lk~ 270 (299)
T KOG3081|consen 268 LKL 270 (299)
T ss_pred HHh
Confidence 654
No 129
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.49 E-value=0.0019 Score=46.83 Aligned_cols=95 Identities=19% Similarity=0.379 Sum_probs=72.1
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC---
Q 045555 48 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--- 124 (175)
Q Consensus 48 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--- 124 (175)
.+|..+++..-+.+..+.|..+|.+.++.+. .+ .+..+..++++.++ .++.+.|.++|+...+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~------------~~vy~~~A~~E~~~-~~d~~~A~~Ife~glk~f~ 67 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CT------------YHVYVAYALMEYYC-NKDPKRARKIFERGLKKFP 67 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-------------THHHHHHHHHHHHT-CS-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CC------------HHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCC
Confidence 4688999999999999999999999986542 11 22223334444333 6778889999999855
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 125 KDKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 125 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
.+...|...++.+...|+.+.|..+|++....
T Consensus 68 ~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 68 SDPDFWLEYLDFLIKLNDINNARALFERAISS 99 (280)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh
Confidence 48889999999999999999999999999865
No 130
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.0016 Score=47.13 Aligned_cols=169 Identities=13% Similarity=0.134 Sum_probs=101.4
Q ss_pred HHHHhhccC-CCcHHHHHHHHHHHHhcCChhHHHHHhhcCCC----CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCC
Q 045555 4 ALEIFGNMK-NKDVISWTTIVSGYINRGQVDIARQYFAQMPE----RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 78 (175)
Q Consensus 4 A~~~~~~m~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 78 (175)
++.+.++.+ +.+..+-+...-...+.|+++.|.+-|+...+ .....||.-+..| +.|+...|++...++...|+
T Consensus 131 ~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 131 SRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGI 209 (459)
T ss_pred hHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhh
Confidence 344555555 24455555555556678888888888887665 3556677776554 55788888888888887775
Q ss_pred CCChHHHH-Hhhhc-----c-Ccch-------hHHHHHHHHHHhcCCHHHHHHHHHhhcCC-----ChhhHHHHHHHHHh
Q 045555 79 RRDEFTTV-RILTT-----F-NNDI-------FVGIALIDMYCKCGDVEKAQRVFWKMLRK-----DKFTWTAMIVGLAI 139 (175)
Q Consensus 79 ~p~~~~~~-~l~~~-----~-~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~ 139 (175)
+--+..-. ....+ + +|-. ..+|.-...+-+.|+++.|.+.+-+|+.+ |++|...+.-.= .
T Consensus 210 r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~ 288 (459)
T KOG4340|consen 210 RQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-M 288 (459)
T ss_pred hcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-c
Confidence 42111000 00000 0 1111 22333334456899999999999999653 666665544332 2
Q ss_pred cCChhHHHHHHHHHHHCCCCCcHHHHHHHHhhhcCC
Q 045555 140 SGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175 (175)
Q Consensus 140 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 175 (175)
.+++.+..+-+.-+++.+- --+.||..++-.||+|
T Consensus 289 ~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKN 323 (459)
T KOG4340|consen 289 DARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKN 323 (459)
T ss_pred cCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhh
Confidence 4556666666666665533 3456888888888875
No 131
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.46 E-value=0.0056 Score=48.57 Aligned_cols=137 Identities=13% Similarity=0.248 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhhcCCC-----CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhc
Q 045555 17 ISWTTIVSGYINRGQVDIARQYFAQMPE-----RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT 91 (175)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (175)
..|-.-+....+.|++...+..|+.... ....+|...+.-....+-++-++++++..++-. |..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~--P~~--------- 171 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA--PEA--------- 171 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC--HHH---------
Confidence 3555566666677777777777776442 233456666666666677777777777776632 221
Q ss_pred cCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--------------------------------------------C--
Q 045555 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--------------------------------------------K-- 125 (175)
Q Consensus 92 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------------------------------------------~-- 125 (175)
-+--|..+++.+++++|.+.+...+. +
T Consensus 172 -------~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rft 244 (835)
T KOG2047|consen 172 -------REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFT 244 (835)
T ss_pred -------HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCc
Confidence 23345555566666665555554421 1
Q ss_pred --ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhhhc
Q 045555 126 --DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173 (175)
Q Consensus 126 --~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 173 (175)
=...|++|.+-|.+.|++++|.++|++-...-. ...-|..++++|+
T Consensus 245 Dq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 245 DQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYA 292 (835)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHH
Confidence 123688899999999999999999988876533 3344555555554
No 132
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.0034 Score=48.19 Aligned_cols=120 Identities=13% Similarity=0.199 Sum_probs=70.3
Q ss_pred HhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCC-hHHHHHhhhccCcchhHHHHH
Q 045555 27 INRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD-EFTTVRILTTFNNDIFVGIAL 102 (175)
Q Consensus 27 ~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~~l 102 (175)
-+.++++++...|++.++ | -.-.|+.....+.-.++++.|.+-|+...... |+ ..+ .+.+.+.+...+
T Consensus 439 Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE--~~~~~~------~v~~~plV~Ka~ 510 (606)
T KOG0547|consen 439 YRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE--PREHLI------IVNAAPLVHKAL 510 (606)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc--cccccc------cccchhhhhhhH
Confidence 344444555555544443 2 12234444444445555555555555444421 11 000 112333344444
Q ss_pred HHHHHhcCCHHHHHHHHHhhcCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 103 IDMYCKCGDVEKAQRVFWKMLRKD---KFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 103 i~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
+-.-.+ +++..|..++.+..+-| ...|..|...-.+.|+.++|+++|++-..
T Consensus 511 l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 511 LVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 444444 99999999999997654 45788899999999999999999988643
No 133
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.46 E-value=0.0098 Score=37.40 Aligned_cols=105 Identities=16% Similarity=0.134 Sum_probs=75.5
Q ss_pred HHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--CC----
Q 045555 53 MIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--KD---- 126 (175)
Q Consensus 53 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~---- 126 (175)
+-.++-..|+.++|+.+|++....|....... ..+-.+.+++...|++++|..++++... |+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~------------~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~ 74 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRR------------RALIQLASTLRNLGRYDEALALLEEALEEFPDDELN 74 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc
Confidence 44567788999999999999999886543222 2334689999999999999999999854 43
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhhhc
Q 045555 127 KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173 (175)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 173 (175)
......+..++...|+.++|.+.+-...- ++...|.--|..|+
T Consensus 75 ~~l~~f~Al~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 75 AALRVFLALALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 12222344577889999999999877653 34446665555554
No 134
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.45 E-value=0.0087 Score=48.94 Aligned_cols=121 Identities=15% Similarity=0.204 Sum_probs=96.4
Q ss_pred HHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchh
Q 045555 21 TIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIF 97 (175)
Q Consensus 21 ~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 97 (175)
...+...-.|+.++|..++.+..+ .+...|.+|...|-+.|+.+++...+--.-... +.|..
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~---------------p~d~e 208 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN---------------PKDYE 208 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC---------------CCChH
Confidence 333444445999999999999875 367789999999999999999988765554432 33557
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcCCChh---hHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKF---TWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 98 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
.|..+-+...+.|.++.|.-+|.+.+..++. .+---...|-+.|+...|.+.|.++.+.
T Consensus 209 ~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~ 270 (895)
T KOG2076|consen 209 LWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQL 270 (895)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh
Confidence 7889999999999999999999999764443 3444566788999999999999999875
No 135
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.44 E-value=0.0041 Score=44.75 Aligned_cols=99 Identities=15% Similarity=0.194 Sum_probs=79.9
Q ss_pred HHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC---ChhhHHH
Q 045555 56 GYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK---DKFTWTA 132 (175)
Q Consensus 56 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~ 132 (175)
-+.+.+++.+|+..|.+.++. .|+ |.+.|-.-..+|.+.|.++.|.+-.+..+.- ....|..
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l--~P~-------------nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~R 154 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIEL--DPT-------------NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGR 154 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhc--CCC-------------cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHH
Confidence 366778899999999999884 343 4444667888999999999999888887553 4568899
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhh
Q 045555 133 MIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171 (175)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 171 (175)
|-.+|...|++++|.+.|++.++ +.|+..+|-.=|+.
T Consensus 155 LG~A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 155 LGLAYLALGKYEEAIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHccCcHHHHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 99999999999999999999886 68988888765543
No 136
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.39 E-value=0.00077 Score=38.74 Aligned_cols=60 Identities=18% Similarity=0.137 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhhcC---------C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 96 IFVGIALIDMYCKCGDVEKAQRVFWKMLR---------K-DKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 96 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~---------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
..+++.+...|.+.|++++|...|++..+ + -..+++.+...+...|++++|.+.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35678899999999999999999999832 1 256788899999999999999999988654
No 137
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.39 E-value=0.024 Score=45.31 Aligned_cols=150 Identities=18% Similarity=0.185 Sum_probs=113.8
Q ss_pred HHHHhhccCC--C-cHHHHHHHHHHHHhcCChhHHHHHhhcCCC--CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCC
Q 045555 4 ALEIFGNMKN--K-DVISWTTIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 78 (175)
Q Consensus 4 A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 78 (175)
|+.++...-+ | +...|-+-+..-+....++.|+.+|.+.+. ++...|..-++.---.++.++|++++++.++.-
T Consensus 603 ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f- 681 (913)
T KOG0495|consen 603 ARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSF- 681 (913)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-
Confidence 4444444433 3 556788888888889999999999998774 677788877777777888999999888887743
Q ss_pred CCChHHHHHhhh---------------------ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhc--CC-ChhhHHHHH
Q 045555 79 RRDEFTTVRILT---------------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML--RK-DKFTWTAMI 134 (175)
Q Consensus 79 ~p~~~~~~~l~~---------------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li 134 (175)
|+-.-+-.++. .|+.....|-.|...-.+.|.+-.|..+++.-. .| +...|-..|
T Consensus 682 -p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~I 760 (913)
T KOG0495|consen 682 -PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESI 760 (913)
T ss_pred -CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHH
Confidence 33332222222 566777888888888889999999999999873 34 778899999
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 045555 135 VGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~ 155 (175)
..-.+.|..+.|..+..+.++
T Consensus 761 r~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 761 RMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999888877664
No 138
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.36 E-value=0.012 Score=45.34 Aligned_cols=140 Identities=14% Similarity=0.230 Sum_probs=109.4
Q ss_pred chHHHHhhccCC---CcHHHHHHHHHHH----HhcCChhHHHHHhhcCCC--CChhHHHHHHHHHhccCChHHHHHHHHH
Q 045555 2 GFALEIFGNMKN---KDVISWTTIVSGY----INRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALTLFRE 72 (175)
Q Consensus 2 ~~A~~~~~~m~~---~~~~~~~~li~~~----~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~ 72 (175)
+.+.++|+...+ ...+||..+=..| .++.+...|+.++..... |-..+|-..|..=.+.++++.+..++++
T Consensus 383 ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 383 ERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 345555554444 2445555554444 467889999999988765 7777888888888899999999999999
Q ss_pred hHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-C----ChhhHHHHHHHHHhcCChhHHH
Q 045555 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR-K----DKFTWTAMIVGLAISGHGDTAL 147 (175)
Q Consensus 73 m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~a~ 147 (175)
.+.-+ +.++.+|.-....-...|+.+.|..+|.-.+. | -...|.+.|+--...|.+++|.
T Consensus 463 fle~~---------------Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR 527 (677)
T KOG1915|consen 463 FLEFS---------------PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKAR 527 (677)
T ss_pred HHhcC---------------hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHH
Confidence 99865 34667777788888899999999999998854 3 3457888898888999999999
Q ss_pred HHHHHHHHC
Q 045555 148 DMFSQMLRA 156 (175)
Q Consensus 148 ~~~~~m~~~ 156 (175)
.+|+++++.
T Consensus 528 ~LYerlL~r 536 (677)
T KOG1915|consen 528 ALYERLLDR 536 (677)
T ss_pred HHHHHHHHh
Confidence 999999875
No 139
>PLN02789 farnesyltranstransferase
Probab=97.35 E-value=0.012 Score=43.56 Aligned_cols=129 Identities=16% Similarity=0.160 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccC-ChHHHHHHHHHhHhCCCCCChHHHHHhhhcc
Q 045555 17 ISWTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVN-RFREALTLFREMQTSNIRRDEFTTVRILTTF 92 (175)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 92 (175)
.++..+-..+...++.++|+.++.++.+ | +..+|+..-..+...| +++++++.++++.+.+.
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-------------- 103 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-------------- 103 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC--------------
Confidence 3555666667778899999999998774 3 4456776666666667 57899999999887642
Q ss_pred CcchhHHHHHHHHHHhcCC--HHHHHHHHHhhcC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 045555 93 NNDIFVGIALIDMYCKCGD--VEKAQRVFWKMLR---KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL 160 (175)
Q Consensus 93 ~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 160 (175)
.+..+|+..-..+.+.|+ .+++..+++.+.+ .+..+|+...-.+.+.|+++++++.+.++++.+...
T Consensus 104 -knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N 175 (320)
T PLN02789 104 -KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN 175 (320)
T ss_pred -cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc
Confidence 122334444444445554 2567777777744 367788888888888888999999998888765443
No 140
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.34 E-value=0.00048 Score=38.56 Aligned_cols=62 Identities=18% Similarity=0.360 Sum_probs=54.9
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccC-ChHHHHHHHHHhHhC
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVN-RFREALTLFREMQTS 76 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~ 76 (175)
++.+|..+...+.+.|++++|...|.+..+ | +...|..+..++.+.| ++++|++.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 567899999999999999999999998774 3 6678999999999999 799999999998763
No 141
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.33 E-value=0.015 Score=45.89 Aligned_cols=137 Identities=12% Similarity=0.014 Sum_probs=89.2
Q ss_pred CcHHHHHHHHHHHHh--c---CChhHHHHHhhcCCC--CC-hhHHHHHHHHHhccC--------ChHHHHHHHHHhHhCC
Q 045555 14 KDVISWTTIVSGYIN--R---GQVDIARQYFAQMPE--RD-YVLWTAMIDGYLRVN--------RFREALTLFREMQTSN 77 (175)
Q Consensus 14 ~~~~~~~~li~~~~~--~---~~~~~a~~~~~~m~~--~~-~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~~ 77 (175)
.|..+|...+.+... . +....|.++|++..+ |+ ...|..+..++.... ++..+.+...+.....
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~ 414 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALP 414 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcc
Confidence 578899999988553 2 337789999999875 53 344554433332221 1223333333322221
Q ss_pred CCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhc--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 78 IRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML--RKDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 78 ~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
.. ..+...+.++.-.....|++++|.+.+++.. .|+...|..+...+...|+.++|.+.|++...
T Consensus 415 ~~-------------~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 415 EL-------------NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred cC-------------cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 11 1122344555555666899999999999994 46788889999999999999999999999875
Q ss_pred CCCCCcHHHH
Q 045555 156 ASIRLDEVTY 165 (175)
Q Consensus 156 ~g~~p~~~t~ 165 (175)
. .|...||
T Consensus 482 L--~P~~pt~ 489 (517)
T PRK10153 482 L--RPGENTL 489 (517)
T ss_pred c--CCCCchH
Confidence 3 5554444
No 142
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.0043 Score=45.97 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=31.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhcCC---ChhhHHH-HHHHHHhcCChhHHHHHHHHH
Q 045555 101 ALIDMYCKCGDVEKAQRVFWKMLRK---DKFTWTA-MIVGLAISGHGDTALDMFSQM 153 (175)
Q Consensus 101 ~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~-li~~~~~~g~~~~a~~~~~~m 153 (175)
.+.++++-.|.+.+|+++|-.+..| |-.+|.+ +.++|.+.++++.|++++-++
T Consensus 398 N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 398 NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 3566666666666777666666443 3444544 335566666666666666554
No 143
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.32 E-value=0.0013 Score=36.74 Aligned_cols=56 Identities=21% Similarity=0.271 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcC-ChhHHHHHHHHHH
Q 045555 99 GIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISG-HGDTALDMFSQML 154 (175)
Q Consensus 99 ~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g-~~~~a~~~~~~m~ 154 (175)
|..+...+.+.|++++|...|++..+ | +...|..+..++.+.| ++++|.+.+++.+
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34444444555555555555554422 2 3334444445555555 4555555554443
No 144
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.28 E-value=0.0079 Score=51.58 Aligned_cols=127 Identities=14% Similarity=0.246 Sum_probs=102.9
Q ss_pred Cc-HHHHHHHHHHHHhcCChhHHHHHhhcCCCC--------ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHH
Q 045555 14 KD-VISWTTIVSGYINRGQVDIARQYFAQMPER--------DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFT 84 (175)
Q Consensus 14 ~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 84 (175)
|| ...|-..|....+.++.+.|++++++.... -.-.|.++++.--..|.-+...++|++..+..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc------- 1527 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC------- 1527 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-------
Confidence 53 456888888999999999999999987641 23467788877777788888899999998852
Q ss_pred HHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 85 TVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR---KDKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
..-.+|..|...|.+.+.+++|.++++.|.+ ....+|-..+..+.+.++-+.|.+++.+.++.
T Consensus 1528 ---------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1528 ---------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred ---------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 2234567899999999999999999999965 36778999999999999999999998887653
No 145
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.24 E-value=0.0046 Score=48.15 Aligned_cols=121 Identities=18% Similarity=0.210 Sum_probs=96.3
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhh
Q 045555 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT 90 (175)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 90 (175)
+|+.+.+.|.-.|--.|.+++|.+.|+.... | |...||-|-..++...+.++|+..|++.++. +|+
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~--------- 496 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPG--------- 496 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCC---------
Confidence 5888999999999999999999999998763 4 7788999999999999999999999999984 332
Q ss_pred ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-------------CChhhHHHHHHHHHhcCChhHHHHH
Q 045555 91 TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR-------------KDKFTWTAMIVGLAISGHGDTALDM 149 (175)
Q Consensus 91 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------------~~~~~~~~li~~~~~~g~~~~a~~~ 149 (175)
-+.+.-.|.-+|...|.+++|...|-.... ++...|..|=.++...++.+.+.+.
T Consensus 497 ----yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 497 ----YVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred ----eeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 133334578889999999999988887621 1235788877777777777655443
No 146
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.24 E-value=0.009 Score=42.92 Aligned_cols=100 Identities=13% Similarity=0.077 Sum_probs=73.3
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--CC
Q 045555 49 LWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--KD 126 (175)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~ 126 (175)
.|..-+..+.+.|++++|+..|+.+.+...... | . ...+-.+..+|...|++++|...|+.+.. |+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~---~-------a--~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~ 212 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST---Y-------Q--PNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK 212 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc---c-------h--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 455555555678999999999999998642211 0 0 11223599999999999999999999964 32
Q ss_pred ----hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcH
Q 045555 127 ----KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162 (175)
Q Consensus 127 ----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 162 (175)
...+-.+...+...|+.++|.+.|+++.+. .|+.
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~--yP~s 250 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK--YPGT 250 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCC
Confidence 344555666788899999999999999875 4544
No 147
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.23 E-value=0.0032 Score=34.72 Aligned_cols=57 Identities=14% Similarity=0.201 Sum_probs=47.0
Q ss_pred HHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 53 MIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 53 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
+...+.+.|++++|.+.|++.++.. |+ +...+..+..++.+.|++++|...|+...+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~--P~-------------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD--PD-------------NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS--TT-------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567889999999999999999975 32 455567899999999999999999998843
No 148
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.025 Score=47.46 Aligned_cols=135 Identities=15% Similarity=0.158 Sum_probs=96.9
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCc
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN 94 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 94 (175)
.+..|+.+..+=.+.|...+|.+-|-+ ..|...|..++....+.|.|++-++.+.-.++..-+|...
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyik--adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id----------- 1169 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIK--ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID----------- 1169 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHh--cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch-----------
Confidence 456788888888888888888887754 3466678999999999999999999887777765555433
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhhcC-----------------------CChhhHHHHHHHHHhcCChhHHHHHHH
Q 045555 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLR-----------------------KDKFTWTAMIVGLAISGHGDTALDMFS 151 (175)
Q Consensus 95 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~a~~~~~ 151 (175)
+.||-+|++.+++.+.+++...--. .++..|..+...++..|++..|.+.-+
T Consensus 1170 -----~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1170 -----SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred -----HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3588888888888887776654210 144566777777888888888877766
Q ss_pred HHHHCCCCCcHHHHHHHHhhhc
Q 045555 152 QMLRASIRLDEVTYVGVLSACT 173 (175)
Q Consensus 152 ~m~~~g~~p~~~t~~~ll~~~~ 173 (175)
+.- +..||..+-.+|.
T Consensus 1245 KAn------s~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1245 KAN------STKTWKEVCFACV 1260 (1666)
T ss_pred hcc------chhHHHHHHHHHh
Confidence 643 4456666555553
No 149
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.22 E-value=0.0073 Score=43.84 Aligned_cols=145 Identities=12% Similarity=0.137 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhcCCC-------CC--hhHHHHHHHHHhcc-CChHHHHHHHHHhHhCCCCC-ChHHHH
Q 045555 18 SWTTIVSGYINRGQVDIARQYFAQMPE-------RD--YVLWTAMIDGYLRV-NRFREALTLFREMQTSNIRR-DEFTTV 86 (175)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~-------~~--~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p-~~~~~~ 86 (175)
.|.....+|.+. ++++|.+.+++..+ ++ ...+..+...|-.. |++++|++.|.+....--.- ....
T Consensus 77 ~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~-- 153 (282)
T PF14938_consen 77 AYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHS-- 153 (282)
T ss_dssp HHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHH--
T ss_pred HHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhh--
Confidence 344444455333 77676666665542 22 23466667777777 78888888888876531111 1111
Q ss_pred HhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC---------Chh-hHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 87 RILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK---------DKF-TWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 87 ~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
-..++..+...+.+.|++++|.++|++.... ++. .|-..+-++...||...|.+.+++..+.
T Consensus 154 --------a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 154 --------AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp --------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred --------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1344567889999999999999999988321 111 2223344555689999999999998754
Q ss_pred --CCCC--cHHHHHHHHhhhc
Q 045555 157 --SIRL--DEVTYVGVLSACT 173 (175)
Q Consensus 157 --g~~p--~~~t~~~ll~~~~ 173 (175)
++.. .......||.+|-
T Consensus 226 ~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 226 DPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp STTSTTSHHHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHH
Confidence 3332 3556666777664
No 150
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.22 E-value=0.012 Score=43.85 Aligned_cols=96 Identities=18% Similarity=0.068 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCC-CChHHHHHhhhc
Q 045555 16 VISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR-RDEFTTVRILTT 91 (175)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~ 91 (175)
......+...+...|++++|...+++..+ .+...+..+...+.+.|++++|...+++....... |+..
T Consensus 114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~-------- 185 (355)
T cd05804 114 WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLR-------- 185 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchh--------
Confidence 34445666778899999999999998764 35667888889999999999999999998875321 1111
Q ss_pred cCcchhHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 045555 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123 (175)
Q Consensus 92 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 123 (175)
...|-.+...+...|++++|.++++...
T Consensus 186 ----~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 186 ----GHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred ----HHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 1233467888999999999999999975
No 151
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.18 E-value=0.0015 Score=42.38 Aligned_cols=69 Identities=13% Similarity=0.168 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhHh-----CCCCCChHHH
Q 045555 17 ISWTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQT-----SNIRRDEFTT 85 (175)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~ 85 (175)
.+...++..+...|++++|..+.+.+.. | |...|..+|.+|...|+..+|.+.|+++.+ .|+.|++.+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3556677778889999999999998874 4 778999999999999999999999999855 4888876654
No 152
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.17 E-value=0.0023 Score=51.64 Aligned_cols=101 Identities=20% Similarity=0.185 Sum_probs=64.5
Q ss_pred hcCChhHHHHHhhcCCCCChh--HHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHH
Q 045555 28 NRGQVDIARQYFAQMPERDYV--LWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDM 105 (175)
Q Consensus 28 ~~~~~~~a~~~~~~m~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~ 105 (175)
....|.+|+.+++.+..++.. -|..+...|+..|+++-|.++|.+.-. ++-.|.+
T Consensus 744 ~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~-----------------------~~dai~m 800 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADL-----------------------FKDAIDM 800 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcch-----------------------hHHHHHH
Confidence 455566666666655544332 256666777777777777777765422 2457888
Q ss_pred HHhcCCHHHHHHHHHhhcCC--ChhhHHHHHHHHHhcCChhHHHHHHH
Q 045555 106 YCKCGDVEKAQRVFWKMLRK--DKFTWTAMIVGLAISGHGDTALDMFS 151 (175)
Q Consensus 106 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~ 151 (175)
|.+.|+|++|.++-.+-..| ....|-+-..-+-.+|++.+|.++|-
T Consensus 801 y~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 801 YGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred HhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 88888888888887776555 34455555555666666666665553
No 153
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.15 E-value=0.00098 Score=38.29 Aligned_cols=60 Identities=18% Similarity=0.352 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHhhcCCC---------CC-hhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 16 VISWTTIVSGYINRGQVDIARQYFAQMPE---------RD-YVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---------~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
..+++.+...|...|++++|+..|++..+ ++ ..+++.+...+...|++++|+..+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35789999999999999999999997652 22 45789999999999999999999998764
No 154
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.15 E-value=0.023 Score=47.45 Aligned_cols=140 Identities=9% Similarity=0.095 Sum_probs=99.7
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC--CCh-hHHHHHHHHHhccCChHHHHHHHHHhHhCCCCC---ChHHHHH
Q 045555 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPE--RDY-VLWTAMIDGYLRVNRFREALTLFREMQTSNIRR---DEFTTVR 87 (175)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~ 87 (175)
.+...+..|+..|...+++++|.++.+...+ |+. ..|..+...+.+.++.+++..+ .+...-... +.+.|..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~ 106 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHIC 106 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHH
Confidence 4678899999999999999999999996654 433 3344444467777777777777 444431111 1122111
Q ss_pred -hhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 88 -ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK---DKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 88 -l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
.+..+.-+...+-.+..+|-+.|+.++|..+|+++.+- |+.+.|.+...|... ++++|.+++.+.+..
T Consensus 107 ~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 107 DKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 11123334456667999999999999999999999653 778889999999988 999999998887653
No 155
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.13 E-value=0.0058 Score=34.46 Aligned_cols=62 Identities=23% Similarity=0.229 Sum_probs=51.2
Q ss_pred HHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHH
Q 045555 103 IDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYV 166 (175)
Q Consensus 103 i~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 166 (175)
-..|.+.+++++|.++++.+.. | +...|......+.+.|++++|.+.|+...+. .|+..+..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~~~ 66 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPDAR 66 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHHHH
Confidence 3578899999999999999954 3 6677888889999999999999999999975 45554433
No 156
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.12 E-value=0.038 Score=44.13 Aligned_cols=58 Identities=17% Similarity=0.229 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhhcCCC-------hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 045555 97 FVGIALIDMYCKCGDVEKAQRVFWKMLRKD-------KFTWTAMIVGLAISGHGDTALDMFSQML 154 (175)
Q Consensus 97 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (175)
..|..+.+.|..+|+++.|..+|++..+-+ ..+|....+.-.++.+++.|+++.++..
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~ 452 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT 452 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 467788999999999999999999985532 2456666677777888888888887764
No 157
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.04 Score=41.85 Aligned_cols=141 Identities=13% Similarity=0.059 Sum_probs=104.8
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCC--CC-ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHh---
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMP--ER-DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRI--- 88 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l--- 88 (175)
+...+-.=.+.+.+.|++++|.-.|+... .| +...|..|+.+|.-.|.+.+|.-.-+...+. +..+..+...+
T Consensus 333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~ 411 (564)
T KOG1174|consen 333 NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTL 411 (564)
T ss_pred cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcce
Confidence 44445444566788999999999998755 34 7889999999999999999998776665543 11122222111
Q ss_pred hh------------------ccCcc-hhHHHHHHHHHHhcCCHHHHHHHHHhhc--CCChhhHHHHHHHHHhcCChhHHH
Q 045555 89 LT------------------TFNND-IFVGIALIDMYCKCGDVEKAQRVFWKML--RKDKFTWTAMIVGLAISGHGDTAL 147 (175)
Q Consensus 89 ~~------------------~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~ 147 (175)
+. ..+|+ ....+.+.+.+...|+.+++..+++... .+|...-+.+.+.+...+.+.+|.
T Consensus 412 V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am 491 (564)
T KOG1174|consen 412 VLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAM 491 (564)
T ss_pred eeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHH
Confidence 11 23444 4566789999999999999999999874 478889999999999999999999
Q ss_pred HHHHHHHHC
Q 045555 148 DMFSQMLRA 156 (175)
Q Consensus 148 ~~~~~m~~~ 156 (175)
+.|...+..
T Consensus 492 ~~y~~ALr~ 500 (564)
T KOG1174|consen 492 EYYYKALRQ 500 (564)
T ss_pred HHHHHHHhc
Confidence 999887653
No 158
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.11 E-value=0.019 Score=36.07 Aligned_cols=105 Identities=13% Similarity=0.082 Sum_probs=75.4
Q ss_pred HHHHHHhcCChhHHHHHhhcCCCC---C---hhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcc
Q 045555 22 IVSGYINRGQVDIARQYFAQMPER---D---YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNND 95 (175)
Q Consensus 22 li~~~~~~~~~~~a~~~~~~m~~~---~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 95 (175)
...++-..|+.++|..+|++.... + ...+-.+-+.+...|++++|..++++.......++ . +
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~--~----------~ 74 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDE--L----------N 74 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc--c----------c
Confidence 445667889999999999986642 1 23566788889999999999999999987642211 0 1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHHHHH
Q 045555 96 IFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLA 138 (175)
Q Consensus 96 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~ 138 (175)
..+...+.-++...|+.++|.+.+-....++..-|.--|..|.
T Consensus 75 ~~l~~f~Al~L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 75 AALRVFLALALYNLGRPKEALEWLLEALAETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112234557788999999999998877776666666666654
No 159
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0064 Score=47.37 Aligned_cols=119 Identities=17% Similarity=0.188 Sum_probs=87.4
Q ss_pred HHHHhhccCC--C-cHHHHHHHHHHHHhcCChhHHHHHhhcCCCC----------ChhHHHHHHHHHhccCChHHHHHHH
Q 045555 4 ALEIFGNMKN--K-DVISWTTIVSGYINRGQVDIARQYFAQMPER----------DYVLWTAMIDGYLRVNRFREALTLF 70 (175)
Q Consensus 4 A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----------~~~~~~~li~~~~~~~~~~~a~~~~ 70 (175)
|.++|.+... | |+...+-+.-..-..+.+.+|...|+...++ -..+++.|.++|.+.+.+++|+..+
T Consensus 399 Ae~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 399 AEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 4455554443 3 6666676666666777888888888765521 2345888999999999999999999
Q ss_pred HHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhh--cCCChhhHHHHHHHH
Q 045555 71 REMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM--LRKDKFTWTAMIVGL 137 (175)
Q Consensus 71 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~li~~~ 137 (175)
++.+... +-+..++.++.-.|...|+++.|.+.|.+. .+|+-.+-..++..+
T Consensus 479 q~aL~l~---------------~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 479 QKALLLS---------------PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHcC---------------CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 9988753 335566689999999999999999999998 567666655555543
No 160
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.09 E-value=0.0079 Score=43.35 Aligned_cols=96 Identities=14% Similarity=0.135 Sum_probs=76.3
Q ss_pred HHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHH
Q 045555 25 GYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIA 101 (175)
Q Consensus 25 ~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~ 101 (175)
-..+.+++.+|++.|.+..+ .|.+-|..-..+|++.|.++.|++=.+..++.+ +.....|..
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD---------------p~yskay~R 154 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID---------------PHYSKAYGR 154 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC---------------hHHHHHHHH
Confidence 35678999999999998775 478889999999999999999998877776643 224667889
Q ss_pred HHHHHHhcCCHHHHHHHHHhhc--CCChhhHHHHHH
Q 045555 102 LIDMYCKCGDVEKAQRVFWKML--RKDKFTWTAMIV 135 (175)
Q Consensus 102 li~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~ 135 (175)
|--+|...|++++|.+.|++.. +|+-.+|-.=++
T Consensus 155 LG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 155 LGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 9999999999999999999984 465555544433
No 161
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.07 E-value=0.0057 Score=44.39 Aligned_cols=131 Identities=12% Similarity=0.123 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhhcCCC-------C--ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHH
Q 045555 17 ISWTTIVSGYINRGQVDIARQYFAQMPE-------R--DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVR 87 (175)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~-------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 87 (175)
..|..-...|-..|++++|.+.|.+... + -...|......|.+. ++++|+..+++....-...+.
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~----- 109 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGR----- 109 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT------
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCc-----
Confidence 4578888888889999999988887642 2 122455555555444 999999998888653111110
Q ss_pred hhhccCcchhHHHHHHHHHHhc-CCHHHHHHHHHhhcC-----C----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 045555 88 ILTTFNNDIFVGIALIDMYCKC-GDVEKAQRVFWKMLR-----K----DKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157 (175)
Q Consensus 88 l~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 157 (175)
+..-...+..+...|... |++++|.+.|++..+ . -..++..+...+.+.|++++|.++|++....-
T Consensus 110 ----~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 110 ----FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp ----HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred ----HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 011134567888899888 999999999999833 1 23467778889999999999999999987643
No 162
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.06 E-value=0.034 Score=41.16 Aligned_cols=107 Identities=17% Similarity=0.257 Sum_probs=81.9
Q ss_pred hHHHHhhccCCCcHHHHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCCh
Q 045555 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDE 82 (175)
Q Consensus 3 ~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 82 (175)
.|.++-++..=|+...|-..+.+|++.++|++-..+-.. +.+++.|.-.+.+|.+.|+..+|......+..
T Consensus 195 ~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA~~yI~k~~~------- 265 (319)
T PF04840_consen 195 QAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEASKYIPKIPD------- 265 (319)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHHHHHHHhCCh-------
Confidence 455666666669999999999999999999998886554 44668899999999999999999999888432
Q ss_pred HHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHHHH
Q 045555 83 FTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGL 137 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 137 (175)
..-+..|.+.|++.+|.+.--+ ..|......+...+
T Consensus 266 -----------------~~rv~~y~~~~~~~~A~~~A~~--~kd~~~L~~i~~~~ 301 (319)
T PF04840_consen 266 -----------------EERVEMYLKCGDYKEAAQEAFK--EKDIDLLKQILKRC 301 (319)
T ss_pred -----------------HHHHHHHHHCCCHHHHHHHHHH--cCCHHHHHHHHHHC
Confidence 3578899999999998766443 34554444444443
No 163
>PLN02789 farnesyltranstransferase
Probab=96.97 E-value=0.052 Score=40.22 Aligned_cols=155 Identities=8% Similarity=0.087 Sum_probs=90.0
Q ss_pred hHHHHhhccCC---CcHHHHHHHHHHHHhcCCh--hHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhH
Q 045555 3 FALEIFGNMKN---KDVISWTTIVSGYINRGQV--DIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQ 74 (175)
Q Consensus 3 ~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~--~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (175)
+|+.+++.+.+ .+..+|+..--.+.+.|+. +++.++++.+.+ .|..+|+.....+.+.|+++++++.+++++
T Consensus 90 eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I 169 (320)
T PLN02789 90 EELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLL 169 (320)
T ss_pred HHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45555555543 3445566544444455542 556666766553 467778888888888888888888888888
Q ss_pred hCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhc---CCH----HHHHHHHHhhc--CC-ChhhHHHHHHHHHhc----
Q 045555 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKC---GDV----EKAQRVFWKML--RK-DKFTWTAMIVGLAIS---- 140 (175)
Q Consensus 75 ~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~---~~~----~~a~~~~~~~~--~~-~~~~~~~li~~~~~~---- 140 (175)
+.++. +...|+.....+.+. |+. ++......+.+ .| +...|+-+...+...
T Consensus 170 ~~d~~---------------N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l 234 (320)
T PLN02789 170 EEDVR---------------NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEAL 234 (320)
T ss_pred HHCCC---------------chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccc
Confidence 86532 222333333333332 222 45555555553 33 667888777777763
Q ss_pred CChhHHHHHHHHHHHCCCCCcHHHHHHHHhhhc
Q 045555 141 GHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173 (175)
Q Consensus 141 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 173 (175)
++..+|.+.+.+..+.+ ..+......|++.|+
T Consensus 235 ~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~ 266 (320)
T PLN02789 235 VSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLC 266 (320)
T ss_pred ccchhHHHHHHHhhccc-CCcHHHHHHHHHHHH
Confidence 34466777777766532 223444555555543
No 164
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.96 E-value=0.1 Score=42.03 Aligned_cols=63 Identities=16% Similarity=0.231 Sum_probs=28.5
Q ss_pred cCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 045555 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK---DKFTWTAMIVGLAISGHGDTALDMFSQML 154 (175)
Q Consensus 92 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (175)
|.-|..+.-.+...|-...++++|.+-|...++. ...+|..+...+.++|.-+.-.+++....
T Consensus 813 ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 813 CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3344444444444444444445555544444331 23344444455555554444444444433
No 165
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=0.014 Score=43.32 Aligned_cols=141 Identities=15% Similarity=0.191 Sum_probs=91.1
Q ss_pred chHHHHhhccCC--C-----cHHHHHHHHHHHHhcCChhHHHHHhhcCCC--------C----------------ChhHH
Q 045555 2 GFALEIFGNMKN--K-----DVISWTTIVSGYINRGQVDIARQYFAQMPE--------R----------------DYVLW 50 (175)
Q Consensus 2 ~~A~~~~~~m~~--~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--------~----------------~~~~~ 50 (175)
++|..+.+++.. | ..+++.++..-.......+-|.+.|+..-+ | |+.+|
T Consensus 302 qeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Y 381 (557)
T KOG3785|consen 302 QEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTY 381 (557)
T ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 466666666664 2 234455555555555666667776664432 0 22222
Q ss_pred H---------------HHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHH
Q 045555 51 T---------------AMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKA 115 (175)
Q Consensus 51 ~---------------~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a 115 (175)
- .+..+.+..|++.+|.++|-++....+ .+..+| .+.|..+|.+++..+.|
T Consensus 382 lnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y-------------~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 382 LNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEI-KNKILY-------------KSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhh-hhhHHH-------------HHHHHHHHHhcCCchHH
Confidence 2 345566777888888888866644322 233444 25678899999999999
Q ss_pred HHHHHhhcCC-Chhh-HHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 116 QRVFWKMLRK-DKFT-WTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 116 ~~~~~~~~~~-~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
+.++-++..| +..+ ...+..-|.+++++--|.+.|+++...
T Consensus 448 W~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 448 WDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 9999988776 3333 444456677999999999999988754
No 166
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.88 E-value=0.0097 Score=48.25 Aligned_cols=146 Identities=21% Similarity=0.214 Sum_probs=83.9
Q ss_pred chHHHHhhccCCCcHH--HHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCC
Q 045555 2 GFALEIFGNMKNKDVI--SWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79 (175)
Q Consensus 2 ~~A~~~~~~m~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 79 (175)
.+|+.+++.++..+.. -|-.+..-|+..|+++.|.++|-+.- .++--|..|.+.|+|+.|.++-++... ..
T Consensus 749 ~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~~--~e 821 (1636)
T KOG3616|consen 749 KKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECHG--PE 821 (1636)
T ss_pred hhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhcC--ch
Confidence 3567777777654332 36677788999999999999997642 367778899999999999998777643 33
Q ss_pred CChHHHHHhhh-----c-------cCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-CChhhHHHHHHHHHhcCChhHH
Q 045555 80 RDEFTTVRILT-----T-------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR-KDKFTWTAMIVGLAISGHGDTA 146 (175)
Q Consensus 80 p~~~~~~~l~~-----~-------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a 146 (175)
.....|..--. | .......=...|.+|-+.|..++..++..+-.. .=..|--.+..-|-..|++..|
T Consensus 822 ~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaa 901 (1636)
T KOG3616|consen 822 ATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAA 901 (1636)
T ss_pred hHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHH
Confidence 33333321111 0 000000001234444444444444444433211 1123444555666667777777
Q ss_pred HHHHHHHH
Q 045555 147 LDMFSQML 154 (175)
Q Consensus 147 ~~~~~~m~ 154 (175)
.+-|-+..
T Consensus 902 e~~flea~ 909 (1636)
T KOG3616|consen 902 EEHFLEAG 909 (1636)
T ss_pred HHHHHhhh
Confidence 77765543
No 167
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.11 Score=40.99 Aligned_cols=154 Identities=11% Similarity=0.079 Sum_probs=95.5
Q ss_pred HHHHhhccCC--CcHHHHHHHHHHHH-hcCChhHHHHHhhcCCC--C--ChhHHHHHHHHHhccCChHHHHHHHH-----
Q 045555 4 ALEIFGNMKN--KDVISWTTIVSGYI-NRGQVDIARQYFAQMPE--R--DYVLWTAMIDGYLRVNRFREALTLFR----- 71 (175)
Q Consensus 4 A~~~~~~m~~--~~~~~~~~li~~~~-~~~~~~~a~~~~~~m~~--~--~~~~~~~li~~~~~~~~~~~a~~~~~----- 71 (175)
++++....+. |....=+.+..++- +.....+|.+++....+ | ...+--+++......|+++.|++++.
T Consensus 326 ~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~ 405 (652)
T KOG2376|consen 326 VRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLES 405 (652)
T ss_pred HHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 4444444444 44333333333332 22346677777776654 2 34456667777888999999999999
Q ss_pred ---HhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC------CCh----hhHHHHHHHHH
Q 045555 72 ---EMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR------KDK----FTWTAMIVGLA 138 (175)
Q Consensus 72 ---~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~------~~~----~~~~~li~~~~ 138 (175)
.+...+-.|..+ .++...|.+-++-+.|..+++.... +.. .++......-.
T Consensus 406 ~~ss~~~~~~~P~~V----------------~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~l 469 (652)
T KOG2376|consen 406 WKSSILEAKHLPGTV----------------GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKL 469 (652)
T ss_pred hhhhhhhhccChhHH----------------HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHH
Confidence 444444444443 3477777877877777777777632 111 23333444455
Q ss_pred hcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhhhcC
Q 045555 139 ISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174 (175)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 174 (175)
+.|+-++|..+++++.+. -.+|..+..-++.+|++
T Consensus 470 r~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~ 504 (652)
T KOG2376|consen 470 RHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYAR 504 (652)
T ss_pred hcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHh
Confidence 678888888888888763 25677777777777764
No 168
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.032 Score=39.92 Aligned_cols=142 Identities=11% Similarity=0.107 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHhhcCCCC----ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhc
Q 045555 16 VISWTTIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT 91 (175)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (175)
..+-+.++.++.-.|.+.-....+++..+. +...-+.|.+.-.+.|+.+.|...|++..+..-..+..+.+.++.
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~- 255 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVL- 255 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHH-
Confidence 345567777777788888888888877653 566678888888899999999999998887655555555533322
Q ss_pred cCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHH
Q 045555 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK---DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGV 168 (175)
Q Consensus 92 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 168 (175)
......|.-.+++..|.+.|.+.... +++.-|.-.-+..-.|+..+|.+....|.+. -|...+-.++
T Consensus 256 --------~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 256 --------MNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred --------hhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 34445566778888999999887553 4555555555555678999999999999875 4555444443
No 169
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.83 E-value=0.089 Score=37.37 Aligned_cols=139 Identities=17% Similarity=0.264 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhhcCCC--CChhHHHHHHH-HHhccCChHHHHHHHHHhHhCCCCCChHHHHH---hhh
Q 045555 17 ISWTTIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMID-GYLRVNRFREALTLFREMQTSNIRRDEFTTVR---ILT 90 (175)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~---l~~ 90 (175)
..|--++.+..-.|+.+.|..++++++. |...--..|=. -+--.|++++|+++++.++..+ +-|.+++.. +++
T Consensus 53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 53 TLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 3466677777788999999999998764 32221122211 2334588999999999998876 233333321 111
Q ss_pred -----------------ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhh--cCC-ChhhHHHHHHHHHhcC---ChhHHH
Q 045555 91 -----------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM--LRK-DKFTWTAMIVGLAISG---HGDTAL 147 (175)
Q Consensus 91 -----------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~--~~~-~~~~~~~li~~~~~~g---~~~~a~ 147 (175)
.+..|...|--+.+.|...|+++.|.-+++++ ..| +.-.+..+.+.+.-.| +.+.|.
T Consensus 132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 56778888888888998899999988888888 445 3334444555544333 566677
Q ss_pred HHHHHHHHC
Q 045555 148 DMFSQMLRA 156 (175)
Q Consensus 148 ~~~~~m~~~ 156 (175)
+.|.+.++.
T Consensus 212 kyy~~alkl 220 (289)
T KOG3060|consen 212 KYYERALKL 220 (289)
T ss_pred HHHHHHHHh
Confidence 788777754
No 170
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.76 E-value=0.047 Score=41.93 Aligned_cols=68 Identities=13% Similarity=-0.027 Sum_probs=46.6
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC
Q 045555 46 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK 125 (175)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 125 (175)
+...|+.+..+|.+.|++++|+..|++.++.. |+.... ...|..+..+|...|+.++|.+.++...+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA----------~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEA----------QAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45567888888888888888888888877743 331100 023456888888888888888888877553
No 171
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.019 Score=41.75 Aligned_cols=146 Identities=14% Similarity=0.162 Sum_probs=90.7
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC--CChhHHHHH-HHHHhccCChHHHHHHHHHhHhCC-CCCChHHHHHhhh
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAM-IDGYLRVNRFREALTLFREMQTSN-IRRDEFTTVRILT 90 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~ 90 (175)
+....+.+..+|-...++..|...|+++.. |...-|... ..++.+.+.+-+|+++...|.... +.......-+.|.
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIk 122 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIK 122 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 556677777777777778888888877764 333222211 344566677777777777775531 1111111111111
Q ss_pred --------------cc--CcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC----ChhhHHHHHHHHHhcCChhHHHHHH
Q 045555 91 --------------TF--NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK----DKFTWTAMIVGLAISGHGDTALDMF 150 (175)
Q Consensus 91 --------------~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~ 150 (175)
.. +.+..+.+......-+.|+++.|.+-|+...+- ....||.-+..| +.|+++.|.+..
T Consensus 123 Yse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~i 201 (459)
T KOG4340|consen 123 YSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHI 201 (459)
T ss_pred cccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHH
Confidence 11 123334444444556889999999999988552 455677666555 568999999999
Q ss_pred HHHHHCCCCCc
Q 045555 151 SQMLRASIRLD 161 (175)
Q Consensus 151 ~~m~~~g~~p~ 161 (175)
.+++++|++..
T Consensus 202 SEIieRG~r~H 212 (459)
T KOG4340|consen 202 SEIIERGIRQH 212 (459)
T ss_pred HHHHHhhhhcC
Confidence 99999988743
No 172
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.73 E-value=0.03 Score=40.28 Aligned_cols=96 Identities=11% Similarity=0.045 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhhcCCC--CCh----hHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhh
Q 045555 17 ISWTTIVSGYINRGQVDIARQYFAQMPE--RDY----VLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT 90 (175)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 90 (175)
..|..-+..+.+.|++++|...|+.+.+ |+. ..+..+...|...|++++|...|+.+.+... +..
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP--~s~------- 214 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP--KSP------- 214 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CCc-------
Confidence 4566666666778999999999999874 543 4678888999999999999999999987532 110
Q ss_pred ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 91 TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 91 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
.....+-.+...+...|+.++|.+.|+.+.+
T Consensus 215 ---~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 215 ---KAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred ---chhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0112223467778899999999999998855
No 173
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.72 E-value=0.097 Score=35.62 Aligned_cols=128 Identities=13% Similarity=0.095 Sum_probs=95.3
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC----CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhh
Q 045555 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPE----RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89 (175)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 89 (175)
|+.-.--.|...+.+.|+..+|...|++... .|....-.+.++....+++-+|...++++.+... ..
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p--a~------- 157 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP--AF------- 157 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC--cc-------
Confidence 5666666788889999999999999998765 4777788888899999999999999999988642 10
Q ss_pred hccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--CChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 045555 90 TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--KDKFTWTAMIVGLAISGHGDTALDMFSQML 154 (175)
Q Consensus 90 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (175)
-.||.. -.+...|...|+.++|+.-|+.... |+...-.-.-..+.+.|+..++..-+.++.
T Consensus 158 --r~pd~~--Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 158 --RSPDGH--LLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred --CCCCch--HHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 112222 2478889999999999999998854 555544445556677887777755554443
No 174
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=96.70 E-value=0.14 Score=40.94 Aligned_cols=159 Identities=13% Similarity=0.127 Sum_probs=98.4
Q ss_pred hHHHHhhccCC---CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC--C--------------------------------
Q 045555 3 FALEIFGNMKN---KDVISWTTIVSGYINRGQVDIARQYFAQMPE--R-------------------------------- 45 (175)
Q Consensus 3 ~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-------------------------------- 45 (175)
+|.+..+...+ .+.+.|..+.-.+-...++++|...|..... |
T Consensus 59 ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql 138 (700)
T KOG1156|consen 59 EAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL 138 (700)
T ss_pred HHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 45555555544 4677888888888888888888888886542 1
Q ss_pred ---ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCC-CCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 045555 46 ---DYVLWTAMIDGYLRVNRFREALTLFREMQTSNI-RRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWK 121 (175)
Q Consensus 46 ---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 121 (175)
....|..+.-++.-.|+...|..+.++..+... .|+...+.... ..-.-.....+.|.+++|.+...+
T Consensus 139 ~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se--------~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 139 RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSE--------LLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHH--------HHHHHHHHHHHcccHHHHHHHHHh
Confidence 223466666667777888888888888877642 44544442111 111223344567777777776665
Q ss_pred hcCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhh
Q 045555 122 MLRK---DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171 (175)
Q Consensus 122 ~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 171 (175)
.... ..-.-..-...+.+.+++++|..+++.++.. .||..-|...+..
T Consensus 211 ~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~ 261 (700)
T KOG1156|consen 211 NEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEK 261 (700)
T ss_pred hhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHH
Confidence 5332 2222334556677788888888888888775 4666655554443
No 175
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.64 E-value=0.14 Score=36.45 Aligned_cols=65 Identities=9% Similarity=-0.037 Sum_probs=46.3
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC--CCh-hH---HHHHHHHHhccCChHHHHHHHHHhHhCCCC
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE--RDY-VL---WTAMIDGYLRVNRFREALTLFREMQTSNIR 79 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~-~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 79 (175)
+....-.....+.+.|++++|.+.|+.+.. |+. .. .-.+..++.+.+++++|...+++..+....
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 344444455556678999999999998875 322 22 245667788999999999999999886543
No 176
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.60 E-value=0.0066 Score=34.22 Aligned_cols=55 Identities=18% Similarity=0.259 Sum_probs=48.2
Q ss_pred HHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhHhCC
Q 045555 23 VSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQTSN 77 (175)
Q Consensus 23 i~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 77 (175)
-..|.+.+++++|.++++.+.+ | +...|.....++.+.|++++|.+.|++..+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3568899999999999999874 3 66778888999999999999999999999854
No 177
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.60 E-value=0.038 Score=39.45 Aligned_cols=91 Identities=19% Similarity=0.269 Sum_probs=74.6
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHhCC----CCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 49 LWTAMIDGYLRVNRFREALTLFREMQTSN----IRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
.|+.-+ .+.+.|++.+|...|....+.. ..|+..-| |.+++...|++++|..+|..+.+
T Consensus 144 ~Y~~A~-~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW----------------LGe~~y~qg~y~~Aa~~f~~~~k 206 (262)
T COG1729 144 LYNAAL-DLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW----------------LGESLYAQGDYEDAAYIFARVVK 206 (262)
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHH----------------HHHHHHhcccchHHHHHHHHHHH
Confidence 366666 4567788999999999999974 34454444 99999999999999999999954
Q ss_pred --C----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 125 --K----DKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 125 --~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
| -...+--+..+..+.|+.++|-.+|+++.++
T Consensus 207 ~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 207 DYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred hCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 2 3467778888999999999999999999876
No 178
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.58 E-value=0.13 Score=35.40 Aligned_cols=136 Identities=9% Similarity=0.034 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhhcCCC--C----ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhh
Q 045555 17 ISWTTIVSGYINRGQVDIARQYFAQMPE--R----DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT 90 (175)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 90 (175)
...-.....+.+.|++++|...|+.+.. | -....-.+..++.+.|++++|...++++.+.-.......+...+.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYML 85 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence 3444455667789999999999998874 3 223456778889999999999999999988654333322322111
Q ss_pred ccCcchhHHHHHHHH---HHhcCCHHHHHHHHHhhcC--CCh------------------hhHHHHHHHHHhcCChhHHH
Q 045555 91 TFNNDIFVGIALIDM---YCKCGDVEKAQRVFWKMLR--KDK------------------FTWTAMIVGLAISGHGDTAL 147 (175)
Q Consensus 91 ~~~~~~~~~~~li~~---~~~~~~~~~a~~~~~~~~~--~~~------------------~~~~~li~~~~~~g~~~~a~ 147 (175)
+. ..+...=.. ....+...+|...|+.+++ |+. ..--.+.+-|.+.|.+..|.
T Consensus 86 g~----~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~ 161 (203)
T PF13525_consen 86 GL----SYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAI 161 (203)
T ss_dssp HH----HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHH
T ss_pred HH----HHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 10 000000000 1112223445555555532 211 11123566788899999999
Q ss_pred HHHHHHHHC
Q 045555 148 DMFSQMLRA 156 (175)
Q Consensus 148 ~~~~~m~~~ 156 (175)
.-++.+++.
T Consensus 162 ~r~~~v~~~ 170 (203)
T PF13525_consen 162 IRFQYVIEN 170 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998875
No 179
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.57 E-value=0.045 Score=45.80 Aligned_cols=139 Identities=17% Similarity=0.137 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhhcCCCC---ChhHHHHHHHHHhccCChHHHHHHHHHhH-------------hCCC-C
Q 045555 17 ISWTTIVSGYINRGQVDIARQYFAQMPER---DYVLWTAMIDGYLRVNRFREALTLFREMQ-------------TSNI-R 79 (175)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~-------------~~~~-~ 79 (175)
..|+.|...|....+...|...|+...+- +...+-.....|++..+|++|..+.-..- +.|+ .
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 47888888888888888888888887763 44556777777888888888877732221 1111 1
Q ss_pred CChHHHHHhhh-------ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCCh-hhHHHHH--HHHHhcCChhHHHHH
Q 045555 80 RDEFTTVRILT-------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDK-FTWTAMI--VGLAISGHGDTALDM 149 (175)
Q Consensus 80 p~~~~~~~l~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~li--~~~~~~g~~~~a~~~ 149 (175)
|....+...+. --+.|...|..+.++|.++|++..|.++|.+...-++ ..|.... ...|..|++.+|++.
T Consensus 573 Lea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~ 652 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDA 652 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 11111111111 2244678899999999999999999999988744322 2333332 235667888888888
Q ss_pred HHHHHH
Q 045555 150 FSQMLR 155 (175)
Q Consensus 150 ~~~m~~ 155 (175)
+.....
T Consensus 653 l~~ii~ 658 (1238)
T KOG1127|consen 653 LGLIIY 658 (1238)
T ss_pred HHHHHH
Confidence 877653
No 180
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.56 E-value=0.1 Score=43.76 Aligned_cols=121 Identities=12% Similarity=0.124 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCC---CC--hHHHHHh
Q 045555 17 ISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR---RD--EFTTVRI 88 (175)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---p~--~~~~~~l 88 (175)
.+.-.+..+|-+.|+.++|..+|++..+ .|..+.|.+...|+.. ++++|.+++.+....-+. ++ ...|..+
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~ 195 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKL 195 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 4566677777777888888888887765 3566677777777777 777777766666443210 00 0001111
Q ss_pred hh--------------------ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC---ChhhHHHHHHHHH
Q 045555 89 LT--------------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK---DKFTWTAMIVGLA 138 (175)
Q Consensus 89 ~~--------------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~ 138 (175)
+. +..--..++--+-..|.+.++|+++..+++.+.+- |.....-++.+|.
T Consensus 196 ~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 196 VHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 11 11222334445556666777777777777776442 4445555666655
No 181
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.55 E-value=0.26 Score=38.83 Aligned_cols=122 Identities=16% Similarity=0.224 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhcCCC----C-ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhcc
Q 045555 18 SWTTIVSGYINRGQVDIARQYFAQMPE----R-DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTF 92 (175)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~----~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 92 (175)
+|...|+.--+...++.|+.+|.+.++ + ++.+++++|.-+| .++..-|.++|+--++. +
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk---------------f 431 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK---------------F 431 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh---------------c
Confidence 344444444444445555555554443 1 3344444443332 23444444444443332 1
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC------ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 93 NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK------DKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 93 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
..+...-..-++-+...++=..+..+|+..... ....|..+++--..-|++..+.++-+++..
T Consensus 432 ~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 432 GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 222223345566666777777777777777443 345788888887788888887777766654
No 182
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.55 E-value=0.092 Score=38.05 Aligned_cols=112 Identities=13% Similarity=0.140 Sum_probs=71.9
Q ss_pred HHHHHhhcCC--CCChhHHHHHHHHHhcc-----CChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHH
Q 045555 34 IARQYFAQMP--ERDYVLWTAMIDGYLRV-----NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMY 106 (175)
Q Consensus 34 ~a~~~~~~m~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~ 106 (175)
..+..|.... ++|-.+|-..+.-+... ++.+-....++.|.+.|+.-|..+| +.|++.+
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vY--------------k~Llnvf 117 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVY--------------KGLLNVF 117 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHH--------------HHHHHhC
Confidence 3455566655 46777788777776544 5677778888888888876666665 5565555
Q ss_pred HhcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhhhcC
Q 045555 107 CKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174 (175)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 174 (175)
-+-.-. | ...+......|=+ +-+=+.+++++|...|+.||..+-..|++++.+
T Consensus 118 PKgkfi------------P-~nvfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr 170 (406)
T KOG3941|consen 118 PKGKFI------------P-QNVFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGR 170 (406)
T ss_pred cccccc------------c-HHHHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcc
Confidence 432211 1 1122233333333 234578888999999999999998888887754
No 183
>PRK15331 chaperone protein SicA; Provisional
Probab=96.50 E-value=0.056 Score=35.79 Aligned_cols=92 Identities=15% Similarity=0.046 Sum_probs=74.7
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhh---cCCC
Q 045555 50 WTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM---LRKD 126 (175)
Q Consensus 50 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~---~~~~ 126 (175)
......-+-+.|++++|..+|.-+...+. .+...+..|..++...+++++|...|... ...|
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~---------------~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d 104 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDF---------------YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND 104 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc---------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC
Confidence 44455567789999999999999988552 33445678999999999999999999886 2346
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 127 KFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
+..+-....+|...|+.+.|.+.|....++
T Consensus 105 p~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 105 YRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred CCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 667777888999999999999999998873
No 184
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.48 E-value=0.054 Score=39.16 Aligned_cols=76 Identities=12% Similarity=0.185 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCcHHHHHH
Q 045555 96 IFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMFSQMLR-----ASIRLDEVTYVG 167 (175)
Q Consensus 96 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t~~~ 167 (175)
..++..+++.+...|+++.+.+.++.+.. | +...|..+|.+|.+.|+...|.+.|+++.+ .|+.|-..+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 35677899999999999999999999965 3 778999999999999999999999998764 589998877766
Q ss_pred HHhh
Q 045555 168 VLSA 171 (175)
Q Consensus 168 ll~~ 171 (175)
..+.
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5544
No 185
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.47 E-value=0.081 Score=41.88 Aligned_cols=113 Identities=12% Similarity=0.044 Sum_probs=76.4
Q ss_pred chHHHHhhccCC--Cc-HHHHHHHHHHHHhc--------CChhHHHHHhhcCC-----CCChhHHHHHHHHHhccCChHH
Q 045555 2 GFALEIFGNMKN--KD-VISWTTIVSGYINR--------GQVDIARQYFAQMP-----ERDYVLWTAMIDGYLRVNRFRE 65 (175)
Q Consensus 2 ~~A~~~~~~m~~--~~-~~~~~~li~~~~~~--------~~~~~a~~~~~~m~-----~~~~~~~~~li~~~~~~~~~~~ 65 (175)
++|..+|++..+ |+ ...|..+..++... ++...+.+...... ..+...|.++.-.....|++++
T Consensus 359 ~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~ 438 (517)
T PRK10153 359 NKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDE 438 (517)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHH
Confidence 468888888876 54 34555544444322 12334444444422 2245677777666667899999
Q ss_pred HHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--CChhhH
Q 045555 66 ALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--KDKFTW 130 (175)
Q Consensus 66 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~ 130 (175)
|...+++....+ |+...|..+...+...|+.++|.+.++.... |...+|
T Consensus 439 A~~~l~rAl~L~----------------ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 439 AYQAINKAIDLE----------------MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred HHHHHHHHHHcC----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 999999999864 3344557899999999999999999999844 544444
No 186
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.45 E-value=0.12 Score=39.92 Aligned_cols=122 Identities=13% Similarity=0.117 Sum_probs=84.7
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHhHhCC-CCCChHHHHHhhh------------------ccCcchh-HHHHHHHHHH
Q 045555 48 VLWTAMIDGYLRVNRFREALTLFREMQTSN-IRRDEFTTVRILT------------------TFNNDIF-VGIALIDMYC 107 (175)
Q Consensus 48 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~------------------~~~~~~~-~~~~li~~~~ 107 (175)
.+|+..|+.-.+..-.+.|..+|-+..+.| +.++...+++++. ...||.. .-+--+.-+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi 477 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI 477 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 456777777777777777777777777777 4667777766666 1223332 2345566667
Q ss_pred hcCCHHHHHHHHHhhcCC---C--hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhh
Q 045555 108 KCGDVEKAQRVFWKMLRK---D--KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171 (175)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~---~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 171 (175)
+-++=+.|..+|+..+++ + -..|..+|+--..-|++..+..+-+.|.+. -|...+...+...
T Consensus 478 ~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sr 544 (660)
T COG5107 478 RINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSR 544 (660)
T ss_pred HhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHH
Confidence 888999999999977543 2 457999999999999999998888888763 5555555444443
No 187
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.45 E-value=0.029 Score=43.03 Aligned_cols=63 Identities=19% Similarity=0.116 Sum_probs=55.0
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--CCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 94 NDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--KDK----FTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 94 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
.+...++.+..+|.+.|++++|...|+...+ |+. ..|..+..+|...|+.++|.+.+++.++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567889999999999999999999999744 543 35999999999999999999999999875
No 188
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.27 E-value=0.081 Score=41.78 Aligned_cols=119 Identities=14% Similarity=0.139 Sum_probs=86.8
Q ss_pred HHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcc
Q 045555 19 WTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNND 95 (175)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 95 (175)
.-+=++-+.+.|++++|....+++.. | +...+..=+-++++.+.+++|+.+.+.-....
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~------------------ 76 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL------------------ 76 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh------------------
Confidence 33456667788999999999988764 3 55556666668999999999995544332110
Q ss_pred hhHHHH--HHHHH--HhcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 045555 96 IFVGIA--LIDMY--CKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157 (175)
Q Consensus 96 ~~~~~~--li~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 157 (175)
+++. +=.+| -+.++.|+|...++...+.+..+...-...+.+.|++++|+++|+.+.+.+
T Consensus 77 --~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 77 --VINSFFFEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred --hcchhhHHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 0111 23344 488999999999997766676677777788889999999999999997654
No 189
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.26 Score=35.13 Aligned_cols=123 Identities=14% Similarity=0.140 Sum_probs=79.0
Q ss_pred chHHHHhhccCC--C-cHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 2 GFALEIFGNMKN--K-DVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 2 ~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
++|.++++.+.+ | |.+++--=+...--.|+..+|++-++...+ .|.-.|.-+-..|...|++++|.-.++++.-
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 456667766665 3 444555455555556666666666665554 4778888999999999999999999999876
Q ss_pred CCCCCChHHHHHhhhccCcchhHHHHHHHHH---HhcCCHHHHHHHHHhhcCCChhhHHHHHHHHHh
Q 045555 76 SNIRRDEFTTVRILTTFNNDIFVGIALIDMY---CKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAI 139 (175)
Q Consensus 76 ~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 139 (175)
.. +-+...+..+.+.+ +...+++.|.+.|....+-+......+...|..
T Consensus 183 ~~---------------P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 183 IQ---------------PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred cC---------------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 43 12333444444444 344556778888888877666544555554443
No 190
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=96.24 E-value=0.36 Score=38.76 Aligned_cols=64 Identities=16% Similarity=0.015 Sum_probs=49.0
Q ss_pred CcchhHHH--HHHHHHHhcCCHHHHHHHHHhhcCCChhhH---HHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 93 NNDIFVGI--ALIDMYCKCGDVEKAQRVFWKMLRKDKFTW---TAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 93 ~~~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
+|.+..|+ .++..|=+.|+++.|....+.....++..+ -.-.+.+..+|++++|...+.+..+-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 45544443 678888999999999999999987654443 34457889999999999999887653
No 191
>PRK15331 chaperone protein SicA; Provisional
Probab=96.15 E-value=0.1 Score=34.60 Aligned_cols=93 Identities=13% Similarity=0.024 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCC-CCChHHHHHhhhcc
Q 045555 17 ISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI-RRDEFTTVRILTTF 92 (175)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~ 92 (175)
...-.....+-+.|++++|..+|..+.- -|..-|..|..++-..+++++|+..|...-..+. .|.+..+
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~------- 110 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF------- 110 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch-------
Confidence 3344455556689999999999998663 3556678888888888999999999988866543 3333333
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC
Q 045555 93 NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK 125 (175)
Q Consensus 93 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 125 (175)
...+|...|+.+.|...|....+.
T Consensus 111 ---------agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 111 ---------TGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred ---------HHHHHHHhCCHHHHHHHHHHHHhC
Confidence 888999999999999999988653
No 192
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.07 E-value=0.16 Score=41.98 Aligned_cols=103 Identities=12% Similarity=0.157 Sum_probs=54.8
Q ss_pred hcCChhHHHHHhhcCCC--CChhHHHHHHHH--HhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHH
Q 045555 28 NRGQVDIARQYFAQMPE--RDYVLWTAMIDG--YLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALI 103 (175)
Q Consensus 28 ~~~~~~~a~~~~~~m~~--~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li 103 (175)
..+++..|.....++.+ ||.. |...+.+ ..+.|..++|..+++.....+.. |..+...+-
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~---------------D~~tLq~l~ 84 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT---------------DDLTLQFLQ 84 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC---------------chHHHHHHH
Confidence 34555556555555442 3332 3334444 34556666666665555443321 333445666
Q ss_pred HHHHhcCCHHHHHHHHHhhcC--CChhhHHHHHHHHHhcCChhHH
Q 045555 104 DMYCKCGDVEKAQRVFWKMLR--KDKFTWTAMIVGLAISGHGDTA 146 (175)
Q Consensus 104 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a 146 (175)
..|.+.+..++|..+|+.... |+......+..+|+|.+.+.+-
T Consensus 85 ~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 85 NVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666633 4545555556666665555443
No 193
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.47 Score=36.35 Aligned_cols=140 Identities=6% Similarity=-0.146 Sum_probs=87.3
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHhhcCCCCChhH---HHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHH---
Q 045555 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVL---WTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVR--- 87 (175)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~--- 87 (175)
-|.+....+..++...|+.++|...|++.+.-|..+ .....-.+.+.|+.+....+.+.+....- -....|..
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~ 308 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQ 308 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhh
Confidence 366778888888888999999999998766433222 11222223466777666666666644320 11111110
Q ss_pred ----------hhh------ccCc-chhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHH
Q 045555 88 ----------ILT------TFNN-DIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTAL 147 (175)
Q Consensus 88 ----------l~~------~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~ 147 (175)
.+. ...| +...+..=...+...|+.++|.-.|..... | +..+|.-++++|...|++.+|.
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 000 1111 222333334566788999999999988743 4 7899999999999999999987
Q ss_pred HHHHHHH
Q 045555 148 DMFSQML 154 (175)
Q Consensus 148 ~~~~~m~ 154 (175)
-+-++..
T Consensus 389 ~~An~~~ 395 (564)
T KOG1174|consen 389 ALANWTI 395 (564)
T ss_pred HHHHHHH
Confidence 6655543
No 194
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.25 Score=35.86 Aligned_cols=30 Identities=23% Similarity=0.411 Sum_probs=16.6
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 46 DYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
|...|-.|-..|...|+.+.|..-|.+..+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 444555555555555555555555555554
No 195
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.02 E-value=0.064 Score=38.80 Aligned_cols=103 Identities=16% Similarity=0.283 Sum_probs=71.6
Q ss_pred HHhhccC--CCcHHHHHHHHHHHHhc-----CChhHHHHHhhcCC----CCChhHHHHHHHHHhccC-------------
Q 045555 6 EIFGNMK--NKDVISWTTIVSGYINR-----GQVDIARQYFAQMP----ERDYVLWTAMIDGYLRVN------------- 61 (175)
Q Consensus 6 ~~~~~m~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~----~~~~~~~~~li~~~~~~~------------- 61 (175)
..|+..+ ++|-.+|-+.+..+... +.++-....++.|+ ++|..+|+.||+.+-+..
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~H 134 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLH 134 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence 4555555 46788888888888654 33443333344444 479999999999987764
Q ss_pred ---ChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCH-HHHHHHHHhh
Q 045555 62 ---RFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDV-EKAQRVFWKM 122 (175)
Q Consensus 62 ---~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~ 122 (175)
+-+=+++++++|...|+.||..+- -.+++++++-+-. .+..++.-.|
T Consensus 135 YP~QQ~C~I~vLeqME~hGVmPdkE~e--------------~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 135 YPQQQNCAIKVLEQMEWHGVMPDKEIE--------------DILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred CchhhhHHHHHHHHHHHcCCCCchHHH--------------HHHHHHhccccccHHHHHHHHHhh
Confidence 235578999999999998887777 5677788766653 4455555555
No 196
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=95.95 E-value=0.14 Score=43.00 Aligned_cols=116 Identities=17% Similarity=0.160 Sum_probs=85.4
Q ss_pred CChhHHHHHhhcCCCCC---hhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHH
Q 045555 30 GQVDIARQYFAQMPERD---YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMY 106 (175)
Q Consensus 30 ~~~~~a~~~~~~m~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~ 106 (175)
++...|...|-+..+.| ...|..|..-|+..-+...|...|+...... ..+...+..+.+.|
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD---------------atdaeaaaa~adty 536 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD---------------ATDAEAAAASADTY 536 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------------chhhhhHHHHHHHh
Confidence 33666777776655533 3469999999988889999999999887743 23444556788888
Q ss_pred HhcCCHHHHHHHHHhh------------------------------------c--CC-ChhhHHHHHHHHHhcCChhHHH
Q 045555 107 CKCGDVEKAQRVFWKM------------------------------------L--RK-DKFTWTAMIVGLAISGHGDTAL 147 (175)
Q Consensus 107 ~~~~~~~~a~~~~~~~------------------------------------~--~~-~~~~~~~li~~~~~~g~~~~a~ 147 (175)
++..+++.|..+.-.. . .| |...|..+..+|...|++..|.
T Consensus 537 ae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~Al 616 (1238)
T KOG1127|consen 537 AEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHAL 616 (1238)
T ss_pred hccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHH
Confidence 8888888887764332 0 11 6678999999999999999999
Q ss_pred HHHHHHHHCCCCCcH
Q 045555 148 DMFSQMLRASIRLDE 162 (175)
Q Consensus 148 ~~~~~m~~~g~~p~~ 162 (175)
++|.+... +.|+.
T Consensus 617 KvF~kAs~--LrP~s 629 (1238)
T KOG1127|consen 617 KVFTKASL--LRPLS 629 (1238)
T ss_pred HhhhhhHh--cCcHh
Confidence 99988764 45654
No 197
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.75 E-value=0.69 Score=35.90 Aligned_cols=73 Identities=16% Similarity=0.343 Sum_probs=52.8
Q ss_pred HHhhccCC-C-cHHHHHHHHHHHHhcCChhHHHHHhhcCCCCCh---hHHHHHHHHHhccCChHHHHHHHHHhHhCCC
Q 045555 6 EIFGNMKN-K-DVISWTTIVSGYINRGQVDIARQYFAQMPERDY---VLWTAMIDGYLRVNRFREALTLFREMQTSNI 78 (175)
Q Consensus 6 ~~~~~m~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 78 (175)
++-+.++. | |..+|-.|+..|...|..++.++++++|..|.. .+|..-|++=....+++.+..+|.+.+....
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 44445554 4 778999999999999999999999999998743 3466666655555666666666666655443
No 198
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.73 E-value=0.63 Score=35.28 Aligned_cols=144 Identities=11% Similarity=0.094 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhhcCCCC-------ChhHHHHHHHHHhc---cCChHHHHHHHHHhHhCCCCCChHHHH
Q 045555 17 ISWTTIVSGYINRGQVDIARQYFAQMPER-------DYVLWTAMIDGYLR---VNRFREALTLFREMQTSNIRRDEFTTV 86 (175)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~ 86 (175)
.+.-.++-+|-...+++...++++.+... ...+--...-++-+ .|+.++|++++.++....-.+++.++.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 33446666788889999999999998863 22222233445556 799999999999977766667777776
Q ss_pred Hhhh----------------------------ccCcchhHHHHHHHHHHhcCC-HH---HHHHHH---Hhh--------c
Q 045555 87 RILT----------------------------TFNNDIFVGIALIDMYCKCGD-VE---KAQRVF---WKM--------L 123 (175)
Q Consensus 87 ~l~~----------------------------~~~~~~~~~~~li~~~~~~~~-~~---~a~~~~---~~~--------~ 123 (175)
.+-. ...|+...--.+...+...|. .+ +..++- ..+ .
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 5544 112222221122222222222 11 112221 111 1
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc
Q 045555 124 RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161 (175)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 161 (175)
..+...+.+++.++.-.|+.++|.+..++|.... +|.
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~-~~~ 338 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK-PPA 338 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-Ccc
Confidence 1366678889999999999999999999998653 444
No 199
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.52 Score=34.26 Aligned_cols=106 Identities=14% Similarity=0.134 Sum_probs=81.4
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccC---ChHHHHHHHHHhHhCCCCCChHHHHHh
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVN---RFREALTLFREMQTSNIRRDEFTTVRI 88 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~l 88 (175)
|...|-.|...|.+.|+.+.|..-|....+ +|...+..+..++.... ...++..+|++.++..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D----------- 223 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD----------- 223 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-----------
Confidence 778899999999999999999999987653 67777777777665543 3678889999998854
Q ss_pred hhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--CChhhHHHHHH
Q 045555 89 LTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--KDKFTWTAMIV 135 (175)
Q Consensus 89 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~ 135 (175)
+.+......|.-.+...|++.+|...|+.|.+ |....+..+|.
T Consensus 224 ----~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 224 ----PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred ----CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 34677777888888999999999999999854 33444544443
No 200
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=95.71 E-value=0.45 Score=38.93 Aligned_cols=123 Identities=16% Similarity=0.159 Sum_probs=99.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhcCCCC---ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCc
Q 045555 18 SWTTIVSGYINRGQVDIARQYFAQMPER---DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN 94 (175)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 94 (175)
.|......+.+.+..++|...+.+...- ....|......+...|.+.+|.+.|...... .|+
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~------------- 716 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPD------------- 716 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCC-------------
Confidence 4666777788889999998888877753 4556777777788889999999999988874 344
Q ss_pred chhHHHHHHHHHHhcCCHHHHHH--HHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 95 DIFVGIALIDMYCKCGDVEKAQR--VFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 95 ~~~~~~~li~~~~~~~~~~~a~~--~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
++..-+++..++.+.|+-..|.. +..++.+ | +...|-.+...+-+.|+.+.|.+.|....+
T Consensus 717 hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 717 HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 33445789999999999888877 8888855 3 678999999999999999999999988765
No 201
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.69 E-value=0.77 Score=36.05 Aligned_cols=137 Identities=13% Similarity=0.132 Sum_probs=90.1
Q ss_pred HHHHHHHHHhcCChhHHHHHhhcCCC-C---------ChhHHHHHHHHHhc----cCChHHHHHHHHHhHhCCCCCChHH
Q 045555 19 WTTIVSGYINRGQVDIARQYFAQMPE-R---------DYVLWTAMIDGYLR----VNRFREALTLFREMQTSNIRRDEFT 84 (175)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~-~---------~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~ 84 (175)
...++...+-.|+-+.+++.+.+..+ + -...|+..+..++- ..+.+.|.+++..+.+.- |+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHH
Confidence 44566666778888888888887554 2 22346666665554 456888999999998852 33333
Q ss_pred HHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC-------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 045555 85 TVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK-------DKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 157 (175)
| .-.-...+...|++++|.+.|+..... ....+--+.-.+.-.++|++|.+.|.++.+..
T Consensus 269 f-------------l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 269 F-------------LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred H-------------HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence 3 123446678899999999999976431 22334445555777899999999999999853
Q ss_pred CCCcHHHHHHHHhh
Q 045555 158 IRLDEVTYVGVLSA 171 (175)
Q Consensus 158 ~~p~~~t~~~ll~~ 171 (175)
..+.-+|..+..+
T Consensus 336 -~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 336 -KWSKAFYAYLAAA 348 (468)
T ss_pred -ccHHHHHHHHHHH
Confidence 2334444444333
No 202
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.69 E-value=0.035 Score=26.67 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=19.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH
Q 045555 129 TWTAMIVGLAISGHGDTALDMFSQML 154 (175)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (175)
+|+.|...|.+.|++++|.++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888854
No 203
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.48 E-value=0.37 Score=30.94 Aligned_cols=131 Identities=8% Similarity=0.051 Sum_probs=75.5
Q ss_pred HHhcCChhHHHHHhhcCCC-CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhh------ccCcchhH
Q 045555 26 YINRGQVDIARQYFAQMPE-RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT------TFNNDIFV 98 (175)
Q Consensus 26 ~~~~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~------~~~~~~~~ 98 (175)
+.-.|..++..++..+... .+..-+|-+|--....-+=+-..++++.+=+ -.|......+-+ ....+...
T Consensus 12 ~ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~~se~ 88 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNKLSEY 88 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT---HH
T ss_pred HHHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcchHHH
Confidence 3446777777787777654 3333444444333333333333333333321 111111100000 12334556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhc---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 045555 99 GIALIDMYCKCGDVEKAQRVFWKML---RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159 (175)
Q Consensus 99 ~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 159 (175)
....++.....|+-|.-.++..++. ++++...-.+..+|.+.|+..++-+++++.-++|++
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 6788899999999999999999986 467888888999999999999999999999999875
No 204
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.45 E-value=0.23 Score=38.86 Aligned_cols=106 Identities=13% Similarity=0.065 Sum_probs=75.0
Q ss_pred chHHHHhhccCC--CcHHHHHHH-HHHHHhcCChhHHHHHhhcCCCC-------ChhHHHHHHHHHhccCChHHHHHHHH
Q 045555 2 GFALEIFGNMKN--KDVISWTTI-VSGYINRGQVDIARQYFAQMPER-------DYVLWTAMIDGYLRVNRFREALTLFR 71 (175)
Q Consensus 2 ~~A~~~~~~m~~--~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~ 71 (175)
++|.++++.+.+ |+...|... .+.+...|++++|.+.|+..... ....+--+.-.+.-..+|++|.+.|.
T Consensus 250 ~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 250 EEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 457788888876 877666533 35567789999999999975531 33345556667888899999999999
Q ss_pred HhHhCCCCCChHHHHHhhhccCcchhHHHH-HHHHHHhcCCH-------HHHHHHHHhh
Q 045555 72 EMQTSNIRRDEFTTVRILTTFNNDIFVGIA-LIDMYCKCGDV-------EKAQRVFWKM 122 (175)
Q Consensus 72 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~-li~~~~~~~~~-------~~a~~~~~~~ 122 (175)
.+.+.+ .++..+|.. ...++...++. ++|.++|.+.
T Consensus 330 ~L~~~s---------------~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 330 RLLKES---------------KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHhcc---------------ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 999864 223333333 33444667777 8899999887
No 205
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.34 Score=36.64 Aligned_cols=119 Identities=12% Similarity=0.135 Sum_probs=85.0
Q ss_pred HHHHHHhcCChhHHHHHhhcCCC------------------CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChH
Q 045555 22 IVSGYINRGQVDIARQYFAQMPE------------------RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEF 83 (175)
Q Consensus 22 li~~~~~~~~~~~a~~~~~~m~~------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 83 (175)
-.+.|.+.|++..|..-|+.... .-...++.|..++.+.+++.+|+..-++.+..+..--..
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KA 293 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKA 293 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhH
Confidence 34567899999999999887432 123468888899999999999999999998865322222
Q ss_pred HHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhc--CCChh-hHHHHHHHHHhcCCh-hHHHHHHHHHHH
Q 045555 84 TTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML--RKDKF-TWTAMIVGLAISGHG-DTALDMFSQMLR 155 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~~~-~~~~li~~~~~~g~~-~~a~~~~~~m~~ 155 (175)
.| .-..+|...|+++.|+..|+++. +|+-. .-+.++..--+..+. ++..++|..|..
T Consensus 294 Ly---------------RrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 294 LY---------------RRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HH---------------HHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 23 57788999999999999999995 45333 334444444444433 445788888865
No 206
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.37 E-value=0.4 Score=30.71 Aligned_cols=122 Identities=16% Similarity=0.192 Sum_probs=76.6
Q ss_pred HHHHHHHHHhcCChhHHHHHhhcCCCC---ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcc
Q 045555 19 WTTIVSGYINRGQVDIARQYFAQMPER---DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNND 95 (175)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 95 (175)
...++..+.+.+.+.....+++.+... +....+.++..|++.. .++.++.+.. . ++...
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~----~~~yd----------- 71 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN--K----SNHYD----------- 71 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh--c----cccCC-----------
Confidence 456778888888888888888876543 4557888888888764 3444454442 1 11111
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCcHHHHHHHHhhh
Q 045555 96 IFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAIS-GHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172 (175)
Q Consensus 96 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 172 (175)
...++..|.+.+.++++.-++..+.. |...+..+... ++++.|.+.+.+- .+...|..++..|
T Consensus 72 ---~~~~~~~c~~~~l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~ 135 (140)
T smart00299 72 ---IEKVGKLCEKAKLYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKAL 135 (140)
T ss_pred ---HHHHHHHHHHcCcHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHH
Confidence 13467777777777777777776532 33344444444 7788888777752 2555666666655
No 207
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.32 E-value=1.5 Score=36.86 Aligned_cols=144 Identities=12% Similarity=0.020 Sum_probs=88.0
Q ss_pred chHHHHhhccCCCcHHHHHHHHHHHHhcCChhHHHHHhhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHhHhCC---
Q 045555 2 GFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER-DYVLWTAMIDGYLRVNRFREALTLFREMQTSN--- 77 (175)
Q Consensus 2 ~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--- 77 (175)
++|..+|++.+ -|..|-..|-..|.+++|.++-+.--+- -..||..-..-+-..++.+.|++.|++--..-
T Consensus 817 EeA~~lYr~ck-----R~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev 891 (1416)
T KOG3617|consen 817 EEALILYRQCK-----RYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEV 891 (1416)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHH
Confidence 45555555554 3555666677777777777765543221 23456666666777788888888887653211
Q ss_pred ------CCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC------------------------CCh
Q 045555 78 ------IRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR------------------------KDK 127 (175)
Q Consensus 78 ------~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~------------------------~~~ 127 (175)
-.|...-|. .-..|...|.-...-+...|+.|.|..++..... .|.
T Consensus 892 ~rmL~e~p~~~e~Yv----~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~ 967 (1416)
T KOG3617|consen 892 FRMLKEYPKQIEQYV----RRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDK 967 (1416)
T ss_pred HHHHHhChHHHHHHH----HhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccH
Confidence 011111111 1223455677777777888999999888887521 133
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHH
Q 045555 128 FTWTAMIVGLAISGHGDTALDMFSQML 154 (175)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (175)
-..-.+.+.|-..|++.+|...|.+..
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 445567777777778877777776653
No 208
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.28 E-value=1.5 Score=36.72 Aligned_cols=73 Identities=15% Similarity=0.269 Sum_probs=41.0
Q ss_pred hHHHHhhccCC--CcHHHHHHHHHHH--HhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 3 FALEIFGNMKN--KDVISWTTIVSGY--INRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 3 ~A~~~~~~m~~--~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
+|....+.+.+ ||. .|...+.++ .|.|+.++|..+++.... .|..|..++-.+|...++.++|..+|++..+
T Consensus 27 kal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~ 105 (932)
T KOG2053|consen 27 KALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQ 105 (932)
T ss_pred HHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 34444444433 443 233333333 356666666666665543 2556666666666666777777776666655
Q ss_pred C
Q 045555 76 S 76 (175)
Q Consensus 76 ~ 76 (175)
.
T Consensus 106 ~ 106 (932)
T KOG2053|consen 106 K 106 (932)
T ss_pred h
Confidence 4
No 209
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.20 E-value=0.057 Score=25.93 Aligned_cols=26 Identities=8% Similarity=0.184 Sum_probs=20.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhH
Q 045555 49 LWTAMIDGYLRVNRFREALTLFREMQ 74 (175)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (175)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888854
No 210
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=95.08 E-value=1.3 Score=36.46 Aligned_cols=140 Identities=15% Similarity=0.200 Sum_probs=90.9
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhh
Q 045555 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT 90 (175)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 90 (175)
.|...|..+--++...|+++.+.+.|++... .....|+.+-.++.-.|.-..|+.+.++-......|+..+-..+..
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 3667777888888888888888888887654 2344577777777777777777777776655443343333222222
Q ss_pred --------------------------------------------------------------------------ccCcch
Q 045555 91 --------------------------------------------------------------------------TFNNDI 96 (175)
Q Consensus 91 --------------------------------------------------------------------------~~~~~~ 96 (175)
.-.|+.
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 223333
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhhcC----CChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 97 FVGIALIDMYCKCGDVEKAQRVFWKMLR----KDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 97 ~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
..| +---|+..++++.|.+..++..+ .+...|..+.-.+...+++.+|.++.+...+
T Consensus 481 if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 481 IFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred HHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 333 33345667778888777777632 3677888888888888888888888776654
No 211
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.06 E-value=2 Score=36.96 Aligned_cols=152 Identities=11% Similarity=0.116 Sum_probs=105.3
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHhhcCC-CCChh-----H------------------HH---------HHHHHHhcc
Q 045555 14 KDVISWTTIVSGYINRGQVDIARQYFAQMP-ERDYV-----L------------------WT---------AMIDGYLRV 60 (175)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~~~~-----~------------------~~---------~li~~~~~~ 60 (175)
.|+...+..+.++.-.+-+.+-.++++++. +++.. . |- .+...+...
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~ 1061 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIEN 1061 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhh
Confidence 477778888888989999999999998865 21110 0 11 122234455
Q ss_pred CChHHHHHHHHHhHhCCCCCChHHHHHhhh------------ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChh
Q 045555 61 NRFREALTLFREMQTSNIRRDEFTTVRILT------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128 (175)
Q Consensus 61 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 128 (175)
+-+++|.++|++.--. ......++. .-.....+|+.+..+-.+.|.+.+|.+-|-+. .|+.
T Consensus 1062 ~LyEEAF~ifkkf~~n-----~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--dDps 1134 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKFDMN-----VSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--DDPS 1134 (1666)
T ss_pred hHHHHHHHHHHHhccc-----HHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc--CCcH
Confidence 6678888888776332 233333333 11234678999999999999999998887653 4667
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhhhcC
Q 045555 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174 (175)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 174 (175)
.|..++....+.|.+++-.+.+.-..++.-+|...+ .||-||++
T Consensus 1135 ~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAk 1178 (1666)
T KOG0985|consen 1135 NYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAK 1178 (1666)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHH
Confidence 899999999999999999999888887777776543 45555543
No 212
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=94.91 E-value=1.2 Score=33.52 Aligned_cols=141 Identities=13% Similarity=0.014 Sum_probs=91.6
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHhhcCC---CCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHH----H
Q 045555 14 KDVISWTTIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT----V 86 (175)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~----~ 86 (175)
.|+..+..-..+|...|.+..|+.=+.... ..+.-++..+-..+...|+.+.++...++.++. .||.-.. -
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YK 264 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYK 264 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHH
Confidence 367777778888888899888877666544 345556666677777888888888888888774 4544322 1
Q ss_pred Hhhh----------------------------ccCcc-----hhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhH
Q 045555 87 RILT----------------------------TFNND-----IFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTW 130 (175)
Q Consensus 87 ~l~~----------------------------~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~ 130 (175)
.+-+ ...|. ...+-.+-.+|...+.+.+|.+...+..+ | |+.++
T Consensus 265 klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l 344 (504)
T KOG0624|consen 265 KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVL 344 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHH
Confidence 1111 12222 12233455666777777777777777643 3 46667
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 131 TAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 131 ~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
.--..+|.....++.|..-|+...+.
T Consensus 345 ~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 345 CDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 66777777777777777777776653
No 213
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.90 E-value=0.46 Score=40.20 Aligned_cols=127 Identities=9% Similarity=-0.022 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhcCCC-------C--ChhHHHHHHHHHhccCChHHHHHHHHHhHhC----CCCCChHH
Q 045555 18 SWTTIVSGYINRGQVDIARQYFAQMPE-------R--DYVLWTAMIDGYLRVNRFREALTLFREMQTS----NIRRDEFT 84 (175)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~-------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~ 84 (175)
+.+.+...+...|++++|...+.+... + -..+...+...+...|++++|...+++.... +. ++..
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~-~~~~- 570 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL-EQLP- 570 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc-cccc-
Confidence 456666777889999999999887652 1 1234556667788899999999998887663 11 1100
Q ss_pred HHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC------C--ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 85 TVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR------K--DKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
.....+..+...+...|++++|...+.+... + ....+..+...+...|+.++|.+.+.+...
T Consensus 571 ---------~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 571 ---------MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred ---------HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0112234566667778999999999888632 1 133444566678889999999999888754
No 214
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=94.89 E-value=1.5 Score=34.87 Aligned_cols=136 Identities=15% Similarity=0.122 Sum_probs=98.5
Q ss_pred chHHHHhhccCC----C-cHHHHHHHHHHHHhcCChhHHHHHhhcCCC--CChhH-HHHHHHHHhccCChHHHHHHHHHh
Q 045555 2 GFALEIFGNMKN----K-DVISWTTIVSGYINRGQVDIARQYFAQMPE--RDYVL-WTAMIDGYLRVNRFREALTLFREM 73 (175)
Q Consensus 2 ~~A~~~~~~m~~----~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~-~~~li~~~~~~~~~~~a~~~~~~m 73 (175)
.-|+.+|.+..+ + ++.+.+++|..||. ++.+-|..+|+--.+ +|... -...+.-++..++-..+..+|+..
T Consensus 383 kaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~ 461 (656)
T KOG1914|consen 383 KAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERV 461 (656)
T ss_pred HHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHH
Confidence 457888888876 3 77889999999974 667899999996443 45444 356777888999999999999999
Q ss_pred HhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-------CChhhHHHHHHHHHhcCChhHH
Q 045555 74 QTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR-------KDKFTWTAMIVGLAISGHGDTA 146 (175)
Q Consensus 74 ~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~a 146 (175)
+..++.|+. +..+|..+++--+..|++..+.++-+.+.. +....-..+++-|.-.+.+.--
T Consensus 462 l~s~l~~~k------------s~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~ 529 (656)
T KOG1914|consen 462 LTSVLSADK------------SKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCS 529 (656)
T ss_pred HhccCChhh------------hHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccccc
Confidence 998665552 345789999999999999999888887732 2223444555666555555444
Q ss_pred HHHH
Q 045555 147 LDMF 150 (175)
Q Consensus 147 ~~~~ 150 (175)
..-+
T Consensus 530 ~~el 533 (656)
T KOG1914|consen 530 LDEL 533 (656)
T ss_pred HHHH
Confidence 3333
No 215
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=94.87 E-value=0.94 Score=32.25 Aligned_cols=82 Identities=18% Similarity=0.195 Sum_probs=55.6
Q ss_pred CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 45 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 45 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
.+...+......+.+.|++++|++.|+++......+..... ..-.+..+|-+.+++++|...|+...+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~------------a~l~la~ayy~~~~y~~A~~~~e~fi~ 97 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQ------------VQLDLIYAYYKNADLPLAQAAIDRFIR 97 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 35554555666778899999999999999986543322211 112588899999999999999999854
Q ss_pred --CC--hhhHHHHHHHHH
Q 045555 125 --KD--KFTWTAMIVGLA 138 (175)
Q Consensus 125 --~~--~~~~~~li~~~~ 138 (175)
|+ -.-|...+.+.+
T Consensus 98 ~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 98 LNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred hCcCCCchHHHHHHHHHh
Confidence 32 223444455443
No 216
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.75 E-value=0.3 Score=35.39 Aligned_cols=70 Identities=17% Similarity=0.283 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhHh-----CCCCCChHHH
Q 045555 16 VISWTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQT-----SNIRRDEFTT 85 (175)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~ 85 (175)
..++..++..+...|+.+.+.+.++.+.+ | +...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 34677788888899999999999998875 3 777899999999999999999999999977 4666665544
No 217
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.72 E-value=0.61 Score=30.23 Aligned_cols=61 Identities=10% Similarity=0.084 Sum_probs=46.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhhcCC------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRK------DKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 95 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
....|+.-..+ .+.|++++|.+.|+.+..+ ....--.++.+|.+.|++++|...+++.++.
T Consensus 10 ~~~ly~~a~~~-l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 10 PQELYQEAQEA-LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHHHHHH-HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34445544444 4589999999999999553 4456677889999999999999999998875
No 218
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=94.72 E-value=0.75 Score=37.56 Aligned_cols=63 Identities=16% Similarity=0.174 Sum_probs=50.7
Q ss_pred HHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhh
Q 045555 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT 90 (175)
Q Consensus 21 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 90 (175)
.+...+.+.|-...|..+|++. ..|.-+|.+|+..|+..+|..+..+-.+ -.|++.-|..+-.
T Consensus 403 ~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 4566677888889999998875 4688888999999999999999988887 4677777766555
No 219
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.70 E-value=0.61 Score=38.15 Aligned_cols=143 Identities=10% Similarity=0.090 Sum_probs=79.5
Q ss_pred CchHHHHhhccCCCcHHHHHHHHHHHHhcCChhHHHHHhhcCCCC-----ChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER-----DYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 1 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
|+||.+++-++.++|. -|..+.+.|++-...++++.-... -...|+.+...+.....|++|.+.|..-..
T Consensus 750 feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 750 FEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred hhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4677777777776544 356667778887777777654432 123566666666666666666666655432
Q ss_pred CCCCCChHHHH-------HhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhcCChhHHHH
Q 045555 76 SNIRRDEFTTV-------RILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALD 148 (175)
Q Consensus 76 ~~~~p~~~~~~-------~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 148 (175)
..-..+..-.. .+....+.+....-.+.+++.+.|.-++|.+.|-.-..|. .-+..|...++|.+|.+
T Consensus 825 ~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~ave 899 (1189)
T KOG2041|consen 825 TENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVE 899 (1189)
T ss_pred hHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHH
Confidence 21100000000 0111223344555567777777777777777666544442 23455666667777776
Q ss_pred HHHHH
Q 045555 149 MFSQM 153 (175)
Q Consensus 149 ~~~~m 153 (175)
+-+..
T Consensus 900 laq~~ 904 (1189)
T KOG2041|consen 900 LAQRF 904 (1189)
T ss_pred HHHhc
Confidence 65554
No 220
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.67 E-value=0.63 Score=38.84 Aligned_cols=117 Identities=17% Similarity=0.177 Sum_probs=78.0
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHhhcCCCC-----------Ch-hHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCC
Q 045555 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPER-----------DY-VLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81 (175)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----------~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 81 (175)
++-..|..|...|.+..+.+-|.-.+..|... |. -+-....-.-.+.|.+++|..+|++.++..
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D---- 830 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRYD---- 830 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH----
Confidence 35568899999999998888888888877631 11 111122222356788899999999888854
Q ss_pred hHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 045555 82 EFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK-DKFTWTAMIVGLAISGHGDTALDMFSQM 153 (175)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m 153 (175)
.|=+.|...|+|++|.++-+.-.+- =-.||......+-..++.+.|++.|++-
T Consensus 831 -------------------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 831 -------------------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred -------------------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 4566677888888888877654221 1235555556666667777777777653
No 221
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.62 E-value=0.18 Score=25.33 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=18.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 129 TWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
+|..+...|.+.|++++|.++|++.++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666666677777777777666653
No 222
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.61 E-value=0.88 Score=30.71 Aligned_cols=93 Identities=14% Similarity=0.150 Sum_probs=61.3
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC---
Q 045555 48 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--- 124 (175)
Q Consensus 48 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--- 124 (175)
..+..+...|++.|+.++|++.|.++......|.... .++-.+|......+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~i------------d~~l~~irv~i~~~d~~~v~~~i~ka~~~~~ 104 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKI------------DMCLNVIRVAIFFGDWSHVEKYIEKAESLIE 104 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHH------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 3577888888888888888888888877654433222 2344678888888888888777777632
Q ss_pred -C-Ch------hhHHHHHHHHHhcCChhHHHHHHHHHH
Q 045555 125 -K-DK------FTWTAMIVGLAISGHGDTALDMFSQML 154 (175)
Q Consensus 125 -~-~~------~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (175)
. |. .+|..+ .+...|++.+|.+.|-+..
T Consensus 105 ~~~d~~~~nrlk~~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 105 KGGDWERRNRLKVYEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred ccchHHHHHHHHHHHHH--HHHHhchHHHHHHHHHccC
Confidence 1 11 122222 2234678999988887765
No 223
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.09 E-value=2.2 Score=33.55 Aligned_cols=75 Identities=17% Similarity=0.215 Sum_probs=54.7
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC---C
Q 045555 49 LWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR---K 125 (175)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~ 125 (175)
+-..|..++-+.|+.++|++.+++|.+....-| ...+.-.|++++...++++++..++.+..+ |
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~-------------~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLD-------------NLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccc-------------hhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 334566677888999999999999988642111 122446799999999999999999998753 2
Q ss_pred --ChhhHHHHHHH
Q 045555 126 --DKFTWTAMIVG 136 (175)
Q Consensus 126 --~~~~~~~li~~ 136 (175)
-..+|+..+--
T Consensus 328 kSAti~YTaALLk 340 (539)
T PF04184_consen 328 KSATICYTAALLK 340 (539)
T ss_pred chHHHHHHHHHHH
Confidence 35677775543
No 224
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.98 E-value=0.98 Score=30.50 Aligned_cols=99 Identities=11% Similarity=0.165 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHhhcCCCC------ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhh
Q 045555 16 VISWTTIVSGYINRGQVDIARQYFAQMPER------DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89 (175)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 89 (175)
...+..+...|.+.|+.+.|.+.|.++++. -...+-.+|......++|..+.....+....--.+.....
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~---- 111 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWER---- 111 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHH----
Confidence 357889999999999999999999999874 2235678888899999999999988888765333221111
Q ss_pred hccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 045555 90 TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123 (175)
Q Consensus 90 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 123 (175)
.+-..+|..|.. ...+++..|-+.|-+..
T Consensus 112 ---~nrlk~~~gL~~--l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 112 ---RNRLKVYEGLAN--LAQRDFKEAAELFLDSL 140 (177)
T ss_pred ---HHHHHHHHHHHH--HHhchHHHHHHHHHccC
Confidence 111223333332 34679999998888873
No 225
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.97 E-value=0.66 Score=35.94 Aligned_cols=135 Identities=9% Similarity=0.209 Sum_probs=80.5
Q ss_pred chHHHHhhccCC---Cc------HHHHHHHHHHHHhcCChhHHHHHhhcCCCC-ChhHHHHHHHH--HhccCChHHHHHH
Q 045555 2 GFALEIFGNMKN---KD------VISWTTIVSGYINRGQVDIARQYFAQMPER-DYVLWTAMIDG--YLRVNRFREALTL 69 (175)
Q Consensus 2 ~~A~~~~~~m~~---~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~li~~--~~~~~~~~~a~~~ 69 (175)
++|.++|.+..+ .+ .+.-+-++++|.. .+.+..........+. ....|-.|..+ +.+.+++++|++.
T Consensus 23 ~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ 101 (549)
T PF07079_consen 23 QESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQA 101 (549)
T ss_pred hHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHH
Confidence 456666666653 12 2334566677654 3344444444444331 13334455444 3567888999888
Q ss_pred HHHhHhC--CCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC--------ChhhHHHHHHHHHh
Q 045555 70 FREMQTS--NIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK--------DKFTWTAMIVGLAI 139 (175)
Q Consensus 70 ~~~m~~~--~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~li~~~~~ 139 (175)
+...... +-.|..... =+....+|-..-+..++++.+.|++.++..+++.+.+. +..+||-.+-.+++
T Consensus 102 ls~w~~~~~~~~~~~Ld~--ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 102 LSVWKEQIKGTESPWLDT--NIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred HHHHHhhhcccccchhhh--hHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH
Confidence 8887765 333322211 12223445556678899999999999999999998542 77788875555544
No 226
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.91 E-value=0.84 Score=32.77 Aligned_cols=94 Identities=11% Similarity=0.123 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhcCCC--C----ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhc
Q 045555 18 SWTTIVSGYINRGQVDIARQYFAQMPE--R----DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT 91 (175)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (175)
.|+.-+..| +.|++..|...|....+ | ..-.+.-|..++...|++++|..+|..+.+.-....
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~---------- 212 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP---------- 212 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC----------
Confidence 577766665 78889999999998775 3 333577899999999999999999999988643211
Q ss_pred cCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 92 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
..+...--|..+..+.|+.++|..+|.++.+
T Consensus 213 --KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 213 --KAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred --CChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 1112223588888999999999999999865
No 227
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.83 E-value=1.1 Score=38.66 Aligned_cols=104 Identities=16% Similarity=0.174 Sum_probs=62.4
Q ss_pred hcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHH
Q 045555 28 NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYC 107 (175)
Q Consensus 28 ~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~ 107 (175)
+.|.+.+|+.+|.-=.+.-...|.+....+.+...+++|--.|+..-+. .-.+.+|.
T Consensus 920 kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl-----------------------ekAl~a~~ 976 (1265)
T KOG1920|consen 920 KHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL-----------------------EKALKAYK 976 (1265)
T ss_pred hcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH-----------------------HHHHHHHH
Confidence 3344444444333322223344556666666777788877777666443 24677888
Q ss_pred hcCCHHHHHHHHHhhcCCChhhH---HHHHHHHHhcCChhHHHHHHHHHH
Q 045555 108 KCGDVEKAQRVFWKMLRKDKFTW---TAMIVGLAISGHGDTALDMFSQML 154 (175)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~ 154 (175)
.+|+|.+|..+-..+..+-...- ..|+.-+...++.-+|-++..+..
T Consensus 977 ~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 977 ECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 88888888888887755432222 556666666666666666666554
No 228
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.80 E-value=1.3 Score=34.93 Aligned_cols=134 Identities=16% Similarity=0.172 Sum_probs=88.1
Q ss_pred HHHHHHhcCChhHHHHHhhcCCC----CChh-------------------------HHHHHHHHHhccCChHHHHHHHHH
Q 045555 22 IVSGYINRGQVDIARQYFAQMPE----RDYV-------------------------LWTAMIDGYLRVNRFREALTLFRE 72 (175)
Q Consensus 22 li~~~~~~~~~~~a~~~~~~m~~----~~~~-------------------------~~~~li~~~~~~~~~~~a~~~~~~ 72 (175)
+...|.+.++++.+...|++... |+.. -.-.=.+.+.+.|++..|+..|.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 44466777888888888887542 1110 011114557788999999999999
Q ss_pred hHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChh---hHHHHHHHHHhcCChhHHHHH
Q 045555 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF---TWTAMIVGLAISGHGDTALDM 149 (175)
Q Consensus 73 m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~ 149 (175)
+++.. | .|...|....-+|.+.|.+..|.+--+.-.+.+.. -|.-=..++....++++|.+.
T Consensus 384 AIkr~--P-------------~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAlea 448 (539)
T KOG0548|consen 384 AIKRD--P-------------EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEA 448 (539)
T ss_pred HHhcC--C-------------chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98865 3 35566788889999999999988877766554333 232223344456678888888
Q ss_pred HHHHHHCCCCCcHHHHHHHHhhh
Q 045555 150 FSQMLRASIRLDEVTYVGVLSAC 172 (175)
Q Consensus 150 ~~~m~~~g~~p~~~t~~~ll~~~ 172 (175)
|.+-++. .|+..-+..-+.-|
T Consensus 449 y~eale~--dp~~~e~~~~~~rc 469 (539)
T KOG0548|consen 449 YQEALEL--DPSNAEAIDGYRRC 469 (539)
T ss_pred HHHHHhc--CchhHHHHHHHHHH
Confidence 8887765 36554444444333
No 229
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.70 E-value=1.7 Score=33.86 Aligned_cols=111 Identities=16% Similarity=0.188 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhhcCCC---------------------CChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 17 ISWTTIVSGYINRGQVDIARQYFAQMPE---------------------RDYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
.-.+.++..+-+.|.++.|+++-..-.. ++...|..|.....+.|+++-|.+.|.+...
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 3478888888888888888887654210 1334455555555555555555555555443
Q ss_pred CCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 045555 76 SNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152 (175)
Q Consensus 76 ~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 152 (175)
. ..|+-.|.-.|+.+.-.++-+..... .-+|.-..++...|+.++..+++.+
T Consensus 376 ~-----------------------~~L~lLy~~~g~~~~L~kl~~~a~~~--~~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 376 F-----------------------SGLLLLYSSTGDREKLSKLAKIAEER--GDINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp H-----------------------HHHHHHHHHCT-HHHHHHHHHHHHHT--T-HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred c-----------------------cccHHHHHHhCCHHHHHHHHHHHHHc--cCHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2 23444444444444444443333221 1245555555555666666655544
No 230
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.65 E-value=1.4 Score=29.47 Aligned_cols=125 Identities=14% Similarity=0.073 Sum_probs=82.6
Q ss_pred CCCcHHHHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhC-CCCCChHHHHHhhh
Q 045555 12 KNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS-NIRRDEFTTVRILT 90 (175)
Q Consensus 12 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~ 90 (175)
..|+...+..++..+.+.|.+..-..+.+--.=+|...-...+-.+. +....+..+--+|.+. +.
T Consensus 25 i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL~~------------ 90 (167)
T PF07035_consen 25 IPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRLGT------------ 90 (167)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHhhh------------
Confidence 34778889999999999999888888777655444333232222222 2233444444444332 10
Q ss_pred ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 045555 91 TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157 (175)
Q Consensus 91 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 157 (175)
.+..+++.+-..|++-+|.++.+....-+...-..++++-.+.+|...-..+|+-..+++
T Consensus 91 -------~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 91 -------AYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred -------hHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 124688899999999999999988755555556778888888888877777777766644
No 231
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.53 E-value=0.23 Score=24.16 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 128 FTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
.+++.+...|...|++++|.+++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677778888888888888888877654
No 232
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.52 E-value=0.23 Score=24.88 Aligned_cols=36 Identities=28% Similarity=0.517 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHH
Q 045555 98 VGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAM 133 (175)
Q Consensus 98 ~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l 133 (175)
++..+...|.+.|++++|.++|+...+ | |...|..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 456789999999999999999999965 3 44444443
No 233
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.45 E-value=0.76 Score=36.08 Aligned_cols=99 Identities=16% Similarity=0.118 Sum_probs=76.1
Q ss_pred HHHHhcCChhHHHHHhhcCC---CCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHH
Q 045555 24 SGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGI 100 (175)
Q Consensus 24 ~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 100 (175)
+..+..|+++.|..+|-... ++|.+.|+.-..+|...|++++|+.=-.+-++. .|+ ...-|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~-------------w~kgy~ 74 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPD-------------WAKGYS 74 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCc-------------hhhHHH
Confidence 45568899999999998754 358888999999999999999998877777763 333 234567
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHH
Q 045555 101 ALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGL 137 (175)
Q Consensus 101 ~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~ 137 (175)
....++.-.|++++|..-|.+=.+ | +...++-+..++
T Consensus 75 r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 75 RKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 888888889999999999988754 3 455666666665
No 234
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.45 E-value=1.5 Score=34.07 Aligned_cols=131 Identities=10% Similarity=0.117 Sum_probs=83.9
Q ss_pred HHhcCChhHHHHHhhcCCCC---C------hhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcch
Q 045555 26 YINRGQVDIARQYFAQMPER---D------YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDI 96 (175)
Q Consensus 26 ~~~~~~~~~a~~~~~~m~~~---~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 96 (175)
+-+.+++.+|..+|.++-.. + .+.-+-++++|... +.+.....+.++.+.. | ...|.
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~--~-~s~~l---------- 81 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQF--G-KSAYL---------- 81 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhc--C-CchHH----------
Confidence 34789999999999987641 1 33456777777654 4555555555555532 1 11221
Q ss_pred hHHHHHHHHH--HhcCCHHHHHHHHHhhcCC------------------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 97 FVGIALIDMY--CKCGDVEKAQRVFWKMLRK------------------DKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 97 ~~~~~li~~~--~~~~~~~~a~~~~~~~~~~------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
.+..+. -+.+.+.+|.+.+..-.+. |...=+..++++...|++.++..++++|.++
T Consensus 82 ----~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 82 ----PLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred ----HHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 222222 3567777777666554221 2233356778888999999999999998876
Q ss_pred CCC----CcHHHHHHHHhhhcC
Q 045555 157 SIR----LDEVTYVGVLSACTH 174 (175)
Q Consensus 157 g~~----p~~~t~~~ll~~~~~ 174 (175)
=++ .|..+|+-++-.++|
T Consensus 158 llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 158 LLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred HhhhhhcccHHHHHHHHHHHhH
Confidence 555 899999886666555
No 235
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.44 E-value=4.4 Score=34.49 Aligned_cols=125 Identities=14% Similarity=0.055 Sum_probs=84.7
Q ss_pred HHHHHHhcCChhHHHHHhhcCCC----CCh----hHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccC
Q 045555 22 IVSGYINRGQVDIARQYFAQMPE----RDY----VLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFN 93 (175)
Q Consensus 22 li~~~~~~~~~~~a~~~~~~m~~----~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 93 (175)
+...+...|++++|...++...+ .+. ...+.+...+...|++++|...+++.....-..... .
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~---------~ 528 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVY---------H 528 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcch---------H
Confidence 34456689999999998887542 222 245666667788999999999999987632111100 0
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-------C----ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 94 NDIFVGIALIDMYCKCGDVEKAQRVFWKMLR-------K----DKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 94 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
+.......+...+...|+++.|.+.+.+... + ....+..+...+...|++++|...+.+...
T Consensus 529 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 601 (903)
T PRK04841 529 YALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLE 601 (903)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHH
Confidence 1122345677788899999999999887632 1 122344455667778999999999988765
No 236
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=93.07 E-value=2.9 Score=31.49 Aligned_cols=122 Identities=13% Similarity=0.133 Sum_probs=89.2
Q ss_pred HHHHhcCChhHHHHHhhcCCC--CCh----------------hHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHH
Q 045555 24 SGYINRGQVDIARQYFAQMPE--RDY----------------VLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT 85 (175)
Q Consensus 24 ~~~~~~~~~~~a~~~~~~m~~--~~~----------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 85 (175)
..+.+.|.+++|..=|+.... |+. ......+..+.-.|+...|++...+++.-
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--------- 184 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--------- 184 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc---------
Confidence 346688999999888887663 210 11223344566677778888877777764
Q ss_pred HHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcH
Q 045555 86 VRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR---KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 162 (175)
.++|...+..-.++|...|++..|..=++...+ .++...--+-..+..-|+.+.++...++-++ +.||.
T Consensus 185 ------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdH 256 (504)
T KOG0624|consen 185 ------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDH 256 (504)
T ss_pred ------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcch
Confidence 356788888999999999999999887777643 4666777777788889999999998888775 45654
No 237
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.02 E-value=1.6 Score=28.32 Aligned_cols=66 Identities=9% Similarity=0.133 Sum_probs=51.1
Q ss_pred HHHHHHHHhcCChhHHHHHhhcCCCC------ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHH
Q 045555 20 TTIVSGYINRGQVDIARQYFAQMPER------DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT 85 (175)
Q Consensus 20 ~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 85 (175)
-.-.....+.|++++|.+.|+.+..+ ....--.|+.+|.+.+++++|...+++.++......-+.|
T Consensus 14 y~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdY 85 (142)
T PF13512_consen 14 YQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDY 85 (142)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccH
Confidence 33344455899999999999998852 3455678899999999999999999999997654333333
No 238
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.93 E-value=0.055 Score=34.87 Aligned_cols=108 Identities=16% Similarity=0.189 Sum_probs=67.0
Q ss_pred HHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC------
Q 045555 52 AMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK------ 125 (175)
Q Consensus 52 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------ 125 (175)
.++..+.+.+.++.....++.+...+... +....+.++..|++.++.++..++++....=
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~--------------~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd~~~~~ 77 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKEN--------------NPDLHTLLLELYIKYDPYEKLLEFLKTSNNYDLDKAL 77 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC---------------SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS-CTHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhccccc--------------CHHHHHHHHHHHHhcCCchHHHHHcccccccCHHHHH
Confidence 35667777888888888888888765332 3445588999999999889998888854221
Q ss_pred ----ChhhHHHHHHHHHhcCChhHHHHHHHHHHH-------CCCCCcHHHHHHHHhhhc
Q 045555 126 ----DKFTWTAMIVGLAISGHGDTALDMFSQMLR-------ASIRLDEVTYVGVLSACT 173 (175)
Q Consensus 126 ----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-------~g~~p~~~t~~~ll~~~~ 173 (175)
....|...+-.|.+.|++++|.+++.++.. ..-.+|...|..+++.|-
T Consensus 78 ~~c~~~~l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l 136 (143)
T PF00637_consen 78 RLCEKHGLYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCL 136 (143)
T ss_dssp HHHHTTTSHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHC
T ss_pred HHHHhcchHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 223455555566666666666554322211 011245667777766654
No 239
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.88 E-value=1.4 Score=36.27 Aligned_cols=109 Identities=16% Similarity=0.185 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchh
Q 045555 18 SWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIF 97 (175)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 97 (175)
+.+-.+.-++..|+..+|.++-.+.+-||-..|-.=+.+++..++|++-.++-..++. +..
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIG------------- 746 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIG------------- 746 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCC-------------
Confidence 4566677788899999999999999999999999999999999999887666554432 112
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 045555 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFS 151 (175)
Q Consensus 98 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 151 (175)
|.-.+.+|.+.|+.++|.+.+-....- .-.+.+|.+.|++.+|.++--
T Consensus 747 -y~PFVe~c~~~~n~~EA~KYiprv~~l-----~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 747 -YLPFVEACLKQGNKDEAKKYIPRVGGL-----QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred -chhHHHHHHhcccHHHHhhhhhccCCh-----HHHHHHHHHhccHHHHHHHHH
Confidence 245788999999999999988765322 267889999999999877643
No 240
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.69 E-value=1.7 Score=27.76 Aligned_cols=96 Identities=15% Similarity=0.152 Sum_probs=55.3
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCc
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN 94 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 94 (175)
+...+|.++..|++.+. ....+.+.. ..+.+.....++.|.+.+.++++.-++.++...
T Consensus 40 ~~~~~~~li~ly~~~~~-~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~~------------------ 98 (140)
T smart00299 40 NPALQTKLIELYAKYDP-QKEIERLDN--KSNHYDIEKVGKLCEKAKLYEEAVELYKKDGNF------------------ 98 (140)
T ss_pred chhHHHHHHHHHHHHCH-HHHHHHHHh--ccccCCHHHHHHHHHHcCcHHHHHHHHHhhcCH------------------
Confidence 45567777777776533 344444442 233444555677777777777777777666432
Q ss_pred chhHHHHHHHHHHhc-CCHHHHHHHHHhhcCCChhhHHHHHHHHH
Q 045555 95 DIFVGIALIDMYCKC-GDVEKAQRVFWKMLRKDKFTWTAMIVGLA 138 (175)
Q Consensus 95 ~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~li~~~~ 138 (175)
...++.+... ++++.|.+.+..- .+...|..++..+.
T Consensus 99 -----~~Al~~~l~~~~d~~~a~~~~~~~--~~~~lw~~~~~~~l 136 (140)
T smart00299 99 -----KDAIVTLIEHLGNYEKAIEYFVKQ--NNPELWAEVLKALL 136 (140)
T ss_pred -----HHHHHHHHHcccCHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 2344444444 6777777776652 34556666665554
No 241
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.68 E-value=0.37 Score=23.36 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 47 YVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 47 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
..+++.|...|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35678888888888888888888888765
No 242
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.55 E-value=2.3 Score=28.85 Aligned_cols=133 Identities=10% Similarity=0.077 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHH-----HHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhcc
Q 045555 18 SWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMI-----DGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTF 92 (175)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li-----~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 92 (175)
.|..-+. +.+.+..++|+.-|..+.+.+...|-.|. ....+.|+..+|+..|++.-.....|...--..
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~A----- 134 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLA----- 134 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHH-----
Confidence 3444333 45778889999988888876555544442 336788999999999999988765554331100
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcH
Q 045555 93 NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK----DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162 (175)
Q Consensus 93 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 162 (175)
--.-.-.+..+|.+++...-.+-+..+ ....-..|--+-.+.|++.+|.+.|..+.+....|..
T Consensus 135 ------Rlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprn 202 (221)
T COG4649 135 ------RLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRN 202 (221)
T ss_pred ------HHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHH
Confidence 011223456788888887777766433 2233456666777999999999999999876666644
No 243
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.52 E-value=0.023 Score=36.68 Aligned_cols=56 Identities=11% Similarity=0.122 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHh
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREM 73 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 73 (175)
+....+.++..|++.+..+...++++.... +-...++..|.+.|.++++.-++.++
T Consensus 41 ~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 41 NPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEAVYLYSKL 96 (143)
T ss_dssp SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHHHHHHHHc
Confidence 344555555555555555555554442221 22234444444555554444444443
No 244
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.48 E-value=0.48 Score=21.94 Aligned_cols=28 Identities=14% Similarity=0.167 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 128 FTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
.+|..+...|...|++++|.+.|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3577777888888888888888888775
No 245
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.43 E-value=0.4 Score=22.23 Aligned_cols=27 Identities=15% Similarity=0.432 Sum_probs=19.3
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 49 LWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
+|..+...+...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 566777777777777777777777766
No 246
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=92.33 E-value=0.51 Score=23.91 Aligned_cols=28 Identities=7% Similarity=0.121 Sum_probs=19.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 045555 133 MIVGLAISGHGDTALDMFSQMLRASIRL 160 (175)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~g~~p 160 (175)
+..+|...|+.+.|.+++++....|-.|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~~~~ 32 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEGDEA 32 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCHH
Confidence 5567777777777877777777654333
No 247
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.31 E-value=1.6 Score=33.21 Aligned_cols=94 Identities=11% Similarity=0.113 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHhhcCC---CCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhcc
Q 045555 16 VISWTTIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTF 92 (175)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 92 (175)
.-+++.+..+|.+.+++..|.+.-+... ++|+....---.+|...|+++.|...|.++++. .|+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~----------- 323 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPS----------- 323 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCC-----------
Confidence 3468899999999999999999988755 468888888888999999999999999999994 333
Q ss_pred CcchhHHHHHHHHHHhcCCHHH-HHHHHHhhcC
Q 045555 93 NNDIFVGIALIDMYCKCGDVEK-AQRVFWKMLR 124 (175)
Q Consensus 93 ~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~ 124 (175)
+...-+-|+.+-.+..+..+ ..++|..|..
T Consensus 324 --Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 324 --NKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344566666666666654 4778888843
No 248
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.29 E-value=0.72 Score=37.42 Aligned_cols=113 Identities=12% Similarity=0.047 Sum_probs=72.7
Q ss_pred HHHHHHhcCChhHHHHHhhcC-------------CCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHh
Q 045555 22 IVSGYINRGQVDIARQYFAQM-------------PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRI 88 (175)
Q Consensus 22 li~~~~~~~~~~~a~~~~~~m-------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 88 (175)
-...+..+|+..+|..+...- ...+..+.-.+..-+.+...+.-|-++|..|-..
T Consensus 709 AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------------ 776 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------------ 776 (1081)
T ss_pred HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH------------
Confidence 344455666666666554322 1123333444444444556677777777777543
Q ss_pred hhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC--Ch-----------hhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 89 LTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK--DK-----------FTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 89 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~-----------~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
.++++.....++|.+|.++-+..++- |+ .-|.---.+|-++|+..+|..+++++.+
T Consensus 777 -----------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 777 -----------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred -----------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 36889999999999999999988653 22 2234455678888888999988888865
Q ss_pred CC
Q 045555 156 AS 157 (175)
Q Consensus 156 ~g 157 (175)
..
T Consensus 846 na 847 (1081)
T KOG1538|consen 846 NA 847 (1081)
T ss_pred hh
Confidence 43
No 249
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.06 E-value=2.2 Score=27.53 Aligned_cols=89 Identities=16% Similarity=0.032 Sum_probs=67.7
Q ss_pred HHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC---C----h
Q 045555 55 DGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK---D----K 127 (175)
Q Consensus 55 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~----~ 127 (175)
-+++..|+.++|++.|.+.+.. .| -....||.-..++.-.|+.++|..-+++..+. . -
T Consensus 51 valaE~g~Ld~AlE~F~qal~l--~P-------------~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtac 115 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL--AP-------------ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTAC 115 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh--cc-------------cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHH
Confidence 3578899999999999999874 22 23445688999999999999999988887542 1 2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 045555 128 FTWTAMIVGLAISGHGDTALDMFSQMLRASI 158 (175)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 158 (175)
..|..-...|...|+-+.|..-|...-+-|-
T Consensus 116 qa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 116 QAFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 3444555667788999999988888776553
No 250
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.96 E-value=3.4 Score=29.58 Aligned_cols=137 Identities=15% Similarity=0.133 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhcCCCC------ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChH---HHHHh
Q 045555 18 SWTTIVSGYINRGQVDIARQYFAQMPER------DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEF---TTVRI 88 (175)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~l 88 (175)
.|+.-+ .-.+.|++++|.+.|+.+.++ ...+--.++-++-+.+++++|+..+++..+......-. .|...
T Consensus 37 LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg 115 (254)
T COG4105 37 LYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG 115 (254)
T ss_pred HHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 444444 445899999999999998752 34456677888899999999999999998875433333 33333
Q ss_pred hh--------------------------------ccCcchh------------HHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 89 LT--------------------------------TFNNDIF------------VGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 89 ~~--------------------------------~~~~~~~------------~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
+. .+.||.. .=..+..-|.++|.+..|..=+++|.+
T Consensus 116 Ls~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e 195 (254)
T COG4105 116 LSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLE 195 (254)
T ss_pred HHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 32 1111211 011455666777777777777777755
Q ss_pred C------ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 125 K------DKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 125 ~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
. .....-.+..+|-+.|-.++|.+.-+-+..
T Consensus 196 ~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 196 NYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred ccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 3 122344566777777777777666555543
No 251
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=91.87 E-value=1.6 Score=35.61 Aligned_cols=98 Identities=13% Similarity=0.142 Sum_probs=60.8
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHH-HHHhhhcc
Q 045555 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFT-TVRILTTF 92 (175)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~ 92 (175)
.+..+...+...+.+...+-.|-++|..|-.. -.++......++|++|.++-+...+ ..||... |...+
T Consensus 745 ~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~-----ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwL--- 814 (1081)
T KOG1538|consen 745 AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL-----KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWL--- 814 (1081)
T ss_pred hhhhHHHHHHHHHhhccccchHHHHHHHhccH-----HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHh---
Confidence 45556666666777778888888988887642 3345667788999999999887765 3333221 10000
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 045555 93 NNDIFVGIALIDMYCKCGDVEKAQRVFWKM 122 (175)
Q Consensus 93 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 122 (175)
....-+.-.=++|.+.|+-.+|.++++++
T Consensus 815 -AE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 815 -AENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred -hhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 01111223445666777777777777666
No 252
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.81 E-value=4.1 Score=31.86 Aligned_cols=83 Identities=12% Similarity=0.215 Sum_probs=62.7
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccC
Q 045555 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFN 93 (175)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 93 (175)
++...|..|.....+.|+++.|.+.|++... |..|+--|.-.|+.+.-.++.+.....|-
T Consensus 345 ~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~~--------------- 404 (443)
T PF04053_consen 345 DDPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERGD--------------- 404 (443)
T ss_dssp STHHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT----------------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHccC---------------
Confidence 4677999999999999999999999999875 66677777888888887777777776652
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 045555 94 NDIFVGIALIDMYCKCGDVEKAQRVFWK 121 (175)
Q Consensus 94 ~~~~~~~~li~~~~~~~~~~~a~~~~~~ 121 (175)
+|....++...|++++..+++.+
T Consensus 405 -----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 -----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred -----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 24566666677777777766664
No 253
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=91.62 E-value=2.6 Score=27.49 Aligned_cols=77 Identities=12% Similarity=0.176 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcC---------CChhhHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCcHHHHHH
Q 045555 98 VGIALIDMYCKCGDVEKAQRVFWKMLR---------KDKFTWTAMIVGLAISGH-GDTALDMFSQMLRASIRLDEVTYVG 167 (175)
Q Consensus 98 ~~~~li~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~t~~~ 167 (175)
..|.++.-....+++....++++.+.. .+-.+|.+++.+.++..- ---+..+|.-|.+.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 457788888888888888888888722 366789999999977665 3456778888988899999999999
Q ss_pred HHhhhcC
Q 045555 168 VLSACTH 174 (175)
Q Consensus 168 ll~~~~~ 174 (175)
++++|-+
T Consensus 121 li~~~l~ 127 (145)
T PF13762_consen 121 LIKAALR 127 (145)
T ss_pred HHHHHHc
Confidence 9999864
No 254
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=91.37 E-value=2.1 Score=26.04 Aligned_cols=62 Identities=18% Similarity=0.166 Sum_probs=46.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHH
Q 045555 102 LIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYV 166 (175)
Q Consensus 102 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 166 (175)
-+..+...|++++|..+.+.+.-||...|-++-. .+.|..+++..-+.+|..+| .|...+|.
T Consensus 45 RlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 45 RLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 4456678999999999999998899998877754 36777778888888887766 44444443
No 255
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.94 E-value=0.88 Score=20.85 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=19.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 129 TWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
.|..+-..+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456677778888888888888887765
No 256
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=90.88 E-value=3.9 Score=28.15 Aligned_cols=95 Identities=18% Similarity=0.285 Sum_probs=59.2
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--CC-
Q 045555 50 WTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--KD- 126 (175)
Q Consensus 50 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~- 126 (175)
.-.....+.+.|++.+|+..|+++.......... ....-.++.++-+.|++++|...++...+ |+
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a------------~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~ 75 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYA------------PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS 75 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTH------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHH------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 3445566788999999999999999864321111 11223689999999999999999999844 32
Q ss_pred -hhhHHHHHHHHHh-------------cCChhHHHHHHHHHHHC
Q 045555 127 -KFTWTAMIVGLAI-------------SGHGDTALDMFSQMLRA 156 (175)
Q Consensus 127 -~~~~~~li~~~~~-------------~g~~~~a~~~~~~m~~~ 156 (175)
..-+...+.+.+. .+...+|...|++++++
T Consensus 76 ~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~ 119 (203)
T PF13525_consen 76 PKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR 119 (203)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHH
Confidence 1223333333221 22345678888887764
No 257
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.76 E-value=5.2 Score=29.39 Aligned_cols=52 Identities=21% Similarity=0.249 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhhcCC-----ChhhHHHHHHHHHhcCChhHHH
Q 045555 96 IFVGIALIDMYCKCGDVEKAQRVFWKMLRK-----DKFTWTAMIVGLAISGHGDTAL 147 (175)
Q Consensus 96 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~ 147 (175)
...--.+...+...|+.+.|.+.+-.+.++ |...-..+++.+---|..+.+.
T Consensus 236 ~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 236 VEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLV 292 (304)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHH
Confidence 333445666666666666666655555433 3344445555555555443333
No 258
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=90.69 E-value=6.1 Score=30.14 Aligned_cols=69 Identities=14% Similarity=0.070 Sum_probs=53.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhcCC-------ChhhHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCcHHHHHHHH
Q 045555 101 ALIDMYCKCGDVEKAQRVFWKMLRK-------DKFTWTAMIVGLAI---SGHGDTALDMFSQMLRASIRLDEVTYVGVL 169 (175)
Q Consensus 101 ~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 169 (175)
.++-+|....+++...++.+.+... ...+-....-++.+ .|+-++|.+++..+....-.+++.|+..+=
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 4666799999999999999999654 22233345556667 999999999999977777778888877653
No 259
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.51 E-value=3.5 Score=27.03 Aligned_cols=89 Identities=15% Similarity=0.250 Sum_probs=46.9
Q ss_pred hccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCC-hhhHHHHHHH
Q 045555 58 LRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKD-KFTWTAMIVG 136 (175)
Q Consensus 58 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~li~~ 136 (175)
...++++++..+++.|.-. .|+. +...+ .-.-.+..+|+|++|.++|.+..+.. ...|..-+.+
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~-----------~e~d~--~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A 85 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNL-----------KELDM--FDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLA 85 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCc-----------cccch--hHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHH
Confidence 3467777887777777663 3321 11111 23334567888888888888876543 2345544444
Q ss_pred HHhcCChhHHHHHH-HHHHHCCCCCc
Q 045555 137 LAISGHGDTALDMF-SQMLRASIRLD 161 (175)
Q Consensus 137 ~~~~g~~~~a~~~~-~~m~~~g~~p~ 161 (175)
+|-.-.-+-.++.+ .++++.|-.|+
T Consensus 86 ~CL~al~Dp~Wr~~A~~~le~~~~~~ 111 (153)
T TIGR02561 86 LCLNAKGDAEWHVHADEVLARDADAD 111 (153)
T ss_pred HHHHhcCChHHHHHHHHHHHhCCCHh
Confidence 44433333344333 33333333333
No 260
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=90.27 E-value=0.89 Score=33.27 Aligned_cols=43 Identities=16% Similarity=0.233 Sum_probs=37.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhh
Q 045555 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171 (175)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 171 (175)
-|+.-|+.-.+.||+++|+++++|.+..|++--..||..-+++
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V~~ 301 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSVKG 301 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHhhc
Confidence 4678999999999999999999999999999888888776653
No 261
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.18 E-value=2.7 Score=25.38 Aligned_cols=60 Identities=12% Similarity=0.041 Sum_probs=39.2
Q ss_pred ChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC---ChhhHHHHHH
Q 045555 62 RFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK---DKFTWTAMIV 135 (175)
Q Consensus 62 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~ 135 (175)
+.-++.+-++.+....+.|++... .+.+.+|.|.+++..|.++|+..+.+ +...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii--------------~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVI--------------EAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHH--------------HHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 344556666666666665554444 78888999999999999998877432 2334555443
No 262
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=89.91 E-value=5.6 Score=28.47 Aligned_cols=140 Identities=13% Similarity=0.082 Sum_probs=74.7
Q ss_pred HHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcch-hHH
Q 045555 21 TIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDI-FVG 99 (175)
Q Consensus 21 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~ 99 (175)
-.+..|++.-++..|-..++++.+|=..- .++ -.|.+..+..---++.+-....++.-+......++---.-|. ...
T Consensus 135 RtMEiyS~ttRFalaCN~s~KIiEPIQSR-CAi-LRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQal 212 (333)
T KOG0991|consen 135 RTMEIYSNTTRFALACNQSEKIIEPIQSR-CAI-LRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQAL 212 (333)
T ss_pred HHHHHHcccchhhhhhcchhhhhhhHHhh-hHh-hhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHH
Confidence 34556666666666666666666652221 122 234444444333344443344444333222222222112221 122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHH
Q 045555 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVT 164 (175)
Q Consensus 100 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 164 (175)
|.|=+.....|. -.++.+|+-..+|.+.....++..|. .+++++|.++++++-+.|+.|....
T Consensus 213 NnLQst~~g~g~-Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Dii 275 (333)
T KOG0991|consen 213 NNLQSTVNGFGL-VNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDII 275 (333)
T ss_pred HHHHHHhccccc-cchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHHH
Confidence 333333333332 23456666666788877778887765 5789999999999999999997643
No 263
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=89.89 E-value=3.5 Score=26.64 Aligned_cols=64 Identities=14% Similarity=0.202 Sum_probs=48.0
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCC---CCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCC
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 78 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 78 (175)
+....+.-+..+.+.|+-++-.++++.+. +++....-.+.++|.+.|+..++-+++.+..+.|+
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 44556677778888888888888888865 46777788899999999999999999999998885
No 264
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=89.63 E-value=4 Score=26.36 Aligned_cols=88 Identities=15% Similarity=0.024 Sum_probs=66.9
Q ss_pred HHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhC-CCCCChHHHHHhhhccCcchhHH
Q 045555 24 SGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTS-NIRRDEFTTVRILTTFNNDIFVG 99 (175)
Q Consensus 24 ~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~ 99 (175)
-+++..|+.+.|++.|.+... .....||.-..++.-.|+.++|++=+++.+.. |.+ +. | -+..|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-tr-t----------acqa~ 118 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TR-T----------ACQAF 118 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-ch-H----------HHHHH
Confidence 356789999999999998653 57888999999999999999999999888774 321 11 1 12223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhc
Q 045555 100 IALIDMYCKCGDVEKAQRVFWKML 123 (175)
Q Consensus 100 ~~li~~~~~~~~~~~a~~~~~~~~ 123 (175)
---...|...|+-+.|..-|...-
T Consensus 119 vQRg~lyRl~g~dd~AR~DFe~AA 142 (175)
T KOG4555|consen 119 VQRGLLYRLLGNDDAARADFEAAA 142 (175)
T ss_pred HHHHHHHHHhCchHHHHHhHHHHH
Confidence 344556788899999999888763
No 265
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.61 E-value=3.7 Score=28.95 Aligned_cols=72 Identities=11% Similarity=0.076 Sum_probs=52.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHH--CCCCCcHHHHHHHHhh
Q 045555 100 IALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMFSQMLR--ASIRLDEVTYVGVLSA 171 (175)
Q Consensus 100 ~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~t~~~ll~~ 171 (175)
+..++.+.+.+.+.++.....+-++ | |..+-..++..||-.|++++|..-++-.-. ....+-..+|..+|.+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4566777788888888887777643 3 666777888999999999999766655543 3456677778777764
No 266
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.36 E-value=0.85 Score=19.95 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=10.9
Q ss_pred HHHHHHHHhcCChhHHHHHhh
Q 045555 20 TTIVSGYINRGQVDIARQYFA 40 (175)
Q Consensus 20 ~~li~~~~~~~~~~~a~~~~~ 40 (175)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344455555555555555543
No 267
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.35 E-value=0.66 Score=21.87 Aligned_cols=20 Identities=30% Similarity=0.311 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHhcCCHHHH
Q 045555 96 IFVGIALIDMYCKCGDVEKA 115 (175)
Q Consensus 96 ~~~~~~li~~~~~~~~~~~a 115 (175)
...|+.+...|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 44445555555555555554
No 268
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.35 E-value=3.4 Score=25.21 Aligned_cols=57 Identities=12% Similarity=0.076 Sum_probs=34.5
Q ss_pred HHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC---ChhhHHHHHH
Q 045555 65 EALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK---DKFTWTAMIV 135 (175)
Q Consensus 65 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~ 135 (175)
+..+-++.+....+.|++. +..+.+.+|.|.+++..|.++|+.++.+ ....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~--------------ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPK--------------IIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HH--------------HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChH--------------HHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 4455555555555544444 4478888999999999999998887432 2225666554
No 269
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.33 E-value=4.7 Score=26.77 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=22.6
Q ss_pred HhcCCHHHHHHHHHhh--cCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 107 CKCGDVEKAQRVFWKM--LRKDK---FTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 107 ~~~~~~~~a~~~~~~~--~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
.+.++.++++.++..+ .+|.. .++... .+.+.|++.+|.++|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhcc
Confidence 3455555555555555 22322 222222 233455566666666655443
No 270
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.01 E-value=4.2 Score=28.69 Aligned_cols=59 Identities=24% Similarity=0.240 Sum_probs=45.3
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 045555 49 LWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM 122 (175)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 122 (175)
|.+.-++.+.+.+.+.+++...++=.+.. +.+...-..+++.||-.|+|++|..=++-.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak---------------Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK---------------PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC---------------CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 34556778889999999999998888864 224444567999999999999997666554
No 271
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.85 E-value=0.93 Score=20.55 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=16.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 132 AMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 132 ~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
.+..++.+.|++++|.+.|+++++.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445566677777777777776653
No 272
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.75 E-value=1.5 Score=20.16 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=18.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 129 TWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666667777777777777776654
No 273
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.68 E-value=5.1 Score=26.31 Aligned_cols=49 Identities=20% Similarity=0.298 Sum_probs=38.0
Q ss_pred HhcCCHHHHHHHHHhh--cCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 045555 107 CKCGDVEKAQRVFWKM--LRK---DKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157 (175)
Q Consensus 107 ~~~~~~~~a~~~~~~~--~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 157 (175)
.+.++.++++.+++.| .+| ...++...+ +...|++.+|.++|+++.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 4589999999999999 345 344544444 456899999999999999875
No 274
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=88.35 E-value=8.7 Score=31.97 Aligned_cols=83 Identities=17% Similarity=0.184 Sum_probs=52.2
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC-CCh---------hH---HHHHHHHHhccCChHHHHHHHHHhHhCCCCC
Q 045555 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPE-RDY---------VL---WTAMIDGYLRVNRFREALTLFREMQTSNIRR 80 (175)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~---------~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 80 (175)
|.+..|..+...-.+.-.++-|...|-+... +.+ .+ -.+=+. .--|++++|.++|-+|-+..
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhh---
Confidence 6677888888887777788888888876653 211 11 111122 23478889988888887764
Q ss_pred ChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 045555 81 DEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWK 121 (175)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 121 (175)
..|..+-+.|+|-.+.++++.
T Consensus 765 --------------------LAielr~klgDwfrV~qL~r~ 785 (1189)
T KOG2041|consen 765 --------------------LAIELRKKLGDWFRVYQLIRN 785 (1189)
T ss_pred --------------------hhHHHHHhhhhHHHHHHHHHc
Confidence 355555556666555555544
No 275
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.33 E-value=8.6 Score=28.53 Aligned_cols=138 Identities=12% Similarity=0.192 Sum_probs=89.4
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCCC--------C----hhHHHHHHHHHhccCChHHHHHHH------------
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPER--------D----YVLWTAMIDGYLRVNRFREALTLF------------ 70 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------~----~~~~~~li~~~~~~~~~~~a~~~~------------ 70 (175)
+...+.++... +.++++++....+..+.. . ...|..|+. +.....++++..+.
T Consensus 30 ~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~-lq~L~Elee~~~~~~~~~~~~~~~~~ 106 (352)
T PF02259_consen 30 EYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVK-LQQLVELEEIIELKSNLSQNPQDLKS 106 (352)
T ss_pred hHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-HhHHHHHHHHHHHHHhhcccHHHHHH
Confidence 34445555444 889999998888877641 1 112322221 22222333333333
Q ss_pred --HHhHh--CCCCCChHHHHHhhh------c----cCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC-------Chhh
Q 045555 71 --REMQT--SNIRRDEFTTVRILT------T----FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK-------DKFT 129 (175)
Q Consensus 71 --~~m~~--~~~~p~~~~~~~l~~------~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~ 129 (175)
+.... .++.++..++..++. . ......+|..+.+.+.+.|.++.|...+..+... ...+
T Consensus 107 l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v 186 (352)
T PF02259_consen 107 LLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRV 186 (352)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcch
Confidence 22222 234566666666666 2 3345678899999999999999999999998652 3556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 130 WTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
.-.-.+.+...|+-.+|...+++..+
T Consensus 187 ~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 187 FLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66677888899999999999988887
No 276
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.26 E-value=3.7 Score=33.93 Aligned_cols=93 Identities=13% Similarity=0.155 Sum_probs=73.1
Q ss_pred hHHHHhhccCCCcHHHHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCCh
Q 045555 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDE 82 (175)
Q Consensus 3 ~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 82 (175)
+|.++-.+.+=||-..|-.-+.+++..+++++-.++-+.+++ ..-|.=...+|.+.|+.++|...+-..-..
T Consensus 702 ~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks--PIGy~PFVe~c~~~~n~~EA~KYiprv~~l------ 773 (829)
T KOG2280|consen 702 RAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS--PIGYLPFVEACLKQGNKDEAKKYIPRVGGL------ 773 (829)
T ss_pred HHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC--CCCchhHHHHHHhcccHHHHhhhhhccCCh------
Confidence 455666666669999999999999999999998887777666 455677788999999999999988766432
Q ss_pred HHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHH
Q 045555 83 FTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 120 (175)
.-...+|.+.|++.+|.++=-
T Consensus 774 -----------------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 774 -----------------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred -----------------HHHHHHHHHhccHHHHHHHHH
Confidence 137888999999988866543
No 277
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.23 E-value=1.1 Score=22.68 Aligned_cols=26 Identities=15% Similarity=0.341 Sum_probs=22.6
Q ss_pred HHHHHHhccCChHHHHHHHHHhHhCC
Q 045555 52 AMIDGYLRVNRFREALTLFREMQTSN 77 (175)
Q Consensus 52 ~li~~~~~~~~~~~a~~~~~~m~~~~ 77 (175)
.|..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46788999999999999999998755
No 278
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=88.04 E-value=6.8 Score=27.02 Aligned_cols=103 Identities=12% Similarity=0.101 Sum_probs=81.0
Q ss_pred CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 45 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 45 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
|++..-..|..++.+.|+..+|...|.+...--. .-|..+.-.+..+....+++..|...++++.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~f--------------A~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e 152 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIF--------------AHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME 152 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcccc--------------CCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh
Confidence 4555566788999999999999999999876432 33444556788999999999999999999854
Q ss_pred -----CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc
Q 045555 125 -----KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161 (175)
Q Consensus 125 -----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 161 (175)
++..+--.+.+.|...|+...|..-|+.....--.|.
T Consensus 153 ~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ 194 (251)
T COG4700 153 YNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ 194 (251)
T ss_pred cCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH
Confidence 2556667788899999999999999998887533333
No 279
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.01 E-value=8.7 Score=28.24 Aligned_cols=121 Identities=13% Similarity=0.122 Sum_probs=78.9
Q ss_pred HHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhH
Q 045555 22 IVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFV 98 (175)
Q Consensus 22 li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 98 (175)
-.......|++.+|...|..... .+.-.--.+..+|...|+.+.|..++..+...--......
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~-------------- 205 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHG-------------- 205 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHH--------------
Confidence 33456678888888888887663 3445567788889999999999999988855421111111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhh-cCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 99 GIALIDMYCKCGDVEKAQRVFWKM-LRK-DKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 99 ~~~li~~~~~~~~~~~a~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
...-|+.+.+.....+...+-... ..| |...--.+...+...|+.+.|.+.+-.+..+
T Consensus 206 l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 206 LQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 122344444444444444433333 234 5666667888899999999999988877765
No 280
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=87.44 E-value=2.7 Score=21.66 Aligned_cols=35 Identities=11% Similarity=0.139 Sum_probs=30.0
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhh
Q 045555 137 LAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171 (175)
Q Consensus 137 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 171 (175)
..+.|-.+++..++++|.+.|+.-+...+..+++-
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 34678888999999999999999999998888764
No 281
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.38 E-value=8.5 Score=32.11 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCC
Q 045555 17 ISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR 62 (175)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~ 62 (175)
..+...|..+.-.|++++|-+..-.|-..+..-|.-.+.-+...++
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccc
Confidence 3556666666677777777766666665555555555444444444
No 282
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.10 E-value=2.2 Score=32.13 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=38.9
Q ss_pred HHHHHhcCChhHHHHHhhcCC--CC-ChhHHHHHHHHHhccCChHHHHHHHHHhH
Q 045555 23 VSGYINRGQVDIARQYFAQMP--ER-DYVLWTAMIDGYLRVNRFREALTLFREMQ 74 (175)
Q Consensus 23 i~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (175)
.+-|.+.|.+++|.+.|..-. .| |.+++..-..+|.+...+-.|..=-+...
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 456788999999999998755 35 78888888888988888776655444443
No 283
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=86.76 E-value=0.99 Score=28.91 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=27.2
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhhhc
Q 045555 138 AISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173 (175)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 173 (175)
-..|.-.+|..+|++|++.|-.||. +..|+..+.
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a~ 139 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEAK 139 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHhc
Confidence 3446677899999999999999984 777877664
No 284
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.66 E-value=7.3 Score=25.89 Aligned_cols=53 Identities=17% Similarity=0.069 Sum_probs=30.6
Q ss_pred HhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 57 YLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 57 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
-.+.++.+++..++.-+... .|..... .+ .-...+.++|+|.+|.++|+++.+
T Consensus 20 al~~~~~~D~e~lL~ALrvL--RP~~~e~-----------~~--~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVL--RPEFPEL-----------DL--FDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHccCChHHHHHHHHHHHHh--CCCchHH-----------HH--HHHHHHHHhCCHHHHHHHHHHHhc
Confidence 34556777777777777663 3332211 11 233345677777777777777754
No 285
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=86.28 E-value=11 Score=27.76 Aligned_cols=23 Identities=22% Similarity=0.681 Sum_probs=12.1
Q ss_pred hHHHHHHHHHhHhCCCCCChHHH
Q 045555 63 FREALTLFREMQTSNIRRDEFTT 85 (175)
Q Consensus 63 ~~~a~~~~~~m~~~~~~p~~~~~ 85 (175)
+++.+.+++.|.+.|..-+..+|
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~ 100 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLY 100 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHH
Confidence 34445555555555555554444
No 286
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.98 E-value=11 Score=27.21 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh---cC----CChhhHHHHHHHHHhcCChhHHHHHH
Q 045555 98 VGIALIDMYCKCGDVEKAQRVFWKM---LR----KDKFTWTAMIVGLAISGHGDTALDMF 150 (175)
Q Consensus 98 ~~~~li~~~~~~~~~~~a~~~~~~~---~~----~~~~~~~~li~~~~~~g~~~~a~~~~ 150 (175)
.+-+.|-.|.-..++..|+++++.- .. .+..+...|+.+|- .|+.+++.+++
T Consensus 192 ~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 192 AYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 3455666666778899999999884 11 26678888888884 67877776654
No 287
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=85.67 E-value=2.4 Score=23.14 Aligned_cols=45 Identities=16% Similarity=0.246 Sum_probs=31.1
Q ss_pred CHHHHHHHHHhhcC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 111 DVEKAQRVFWKMLR--KDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 111 ~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
.++...++.+.+.. .|...--.+|.+|...|++++|.+.++++.+
T Consensus 5 ~~~~~~~~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 5 QLEELEELIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34555566666543 2555555688999999999999999988875
No 288
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=84.83 E-value=6.8 Score=23.93 Aligned_cols=81 Identities=17% Similarity=0.099 Sum_probs=56.4
Q ss_pred chHHHHhhccCC-CcHHHHHHHH--HHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCC
Q 045555 2 GFALEIFGNMKN-KDVISWTTIV--SGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 78 (175)
Q Consensus 2 ~~A~~~~~~m~~-~~~~~~~~li--~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 78 (175)
+||..+=+++.. ++..-.-.|| ..+.+.|++++|..+.+.+..||...|-.|.. -+.|..++...-+..|..+|
T Consensus 22 qEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg- 98 (115)
T TIGR02508 22 QEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG- 98 (115)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-
Confidence 455556565554 4323333444 45778999999999999999999999988755 36777777877788887776
Q ss_pred CCChHHH
Q 045555 79 RRDEFTT 85 (175)
Q Consensus 79 ~p~~~~~ 85 (175)
.|....|
T Consensus 99 ~p~lq~F 105 (115)
T TIGR02508 99 DPRLQTF 105 (115)
T ss_pred CHHHHHH
Confidence 3443333
No 289
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=84.65 E-value=13 Score=26.81 Aligned_cols=75 Identities=15% Similarity=0.108 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhhcCC------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCcHHHHHHH
Q 045555 96 IFVGIALIDMYCKCGDVEKAQRVFWKMLRK------DKFTWTAMIVGLAISGHGDTALDMFSQMLRA-SIRLDEVTYVGV 168 (175)
Q Consensus 96 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~l 168 (175)
...|+-.+.- .+.|++++|.+.|+.+... ...+--.++-++.+.++++.|...+++.... +-.||. -|..-
T Consensus 35 ~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~Y 112 (254)
T COG4105 35 SELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYY 112 (254)
T ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHH
Confidence 3445544443 4689999999999999543 3345556677888999999999999998875 445554 44444
Q ss_pred Hhhh
Q 045555 169 LSAC 172 (175)
Q Consensus 169 l~~~ 172 (175)
|.|.
T Consensus 113 lkgL 116 (254)
T COG4105 113 LKGL 116 (254)
T ss_pred HHHH
Confidence 4443
No 290
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.56 E-value=11 Score=26.10 Aligned_cols=40 Identities=13% Similarity=0.029 Sum_probs=26.2
Q ss_pred hcCCHHHHHHHHHhhc-------CCChhhHHHHHHHHHhcCChhHHH
Q 045555 108 KCGDVEKAQRVFWKML-------RKDKFTWTAMIVGLAISGHGDTAL 147 (175)
Q Consensus 108 ~~~~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~a~ 147 (175)
-..+.+++..++.... +.|+..+.+|...+-+.|+++.|.
T Consensus 152 ~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 152 TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3566677776666652 236667777777777777777664
No 291
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=84.06 E-value=13 Score=28.82 Aligned_cols=118 Identities=12% Similarity=0.045 Sum_probs=82.4
Q ss_pred hcCChhHHHHHhhcCCC--CChh-------------HHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhcc
Q 045555 28 NRGQVDIARQYFAQMPE--RDYV-------------LWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTF 92 (175)
Q Consensus 28 ~~~~~~~a~~~~~~m~~--~~~~-------------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 92 (175)
-.++.+.|...|++... |+.. .|..=-+-..+.|++..|.+.|.+.+. +.|+ ..
T Consensus 215 y~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~--idP~---------n~ 283 (486)
T KOG0550|consen 215 YNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN--IDPS---------NK 283 (486)
T ss_pred cccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc--CCcc---------cc
Confidence 45677777777877664 3221 122223446788999999999999887 4444 24
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChh-hHHHHH--HHHHhcCChhHHHHHHHHHHHC
Q 045555 93 NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF-TWTAMI--VGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 93 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~li--~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
.|+...|-.......+.|+..+|..--+....-|.. .+..+. .++...++|++|++-|++..+.
T Consensus 284 ~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 284 KTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred chhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566677778888899999999999999888766543 233333 3455678999999998887654
No 292
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=83.76 E-value=26 Score=31.00 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=11.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhh
Q 045555 102 LIDMYCKCGDVEKAQRVFWKM 122 (175)
Q Consensus 102 li~~~~~~~~~~~a~~~~~~~ 122 (175)
.+..|++...|++|.++-..-
T Consensus 1032 av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1032 AVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHhhHhHHHHHHHHHHhc
Confidence 444555555555555554443
No 293
>PRK09687 putative lyase; Provisional
Probab=83.39 E-value=15 Score=26.81 Aligned_cols=166 Identities=11% Similarity=0.040 Sum_probs=96.5
Q ss_pred hHHHHhhcc--CCCcHHHHHHHHHHHHhcCCh-----hHHHHHhhc-CCCCChhHHHHHHHHHhccCChHHHHHHHHHhH
Q 045555 3 FALEIFGNM--KNKDVISWTTIVSGYINRGQV-----DIARQYFAQ-MPERDYVLWTAMIDGYLRVNRFREALTLFREMQ 74 (175)
Q Consensus 3 ~A~~~~~~m--~~~~~~~~~~li~~~~~~~~~-----~~a~~~~~~-m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (175)
++...+..+ ..|+..+-...+.+++..+.. ..+.+.+.. +..++..+=...+.++.+.++ ++++..+-.+.
T Consensus 90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L 168 (280)
T PRK09687 90 NVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLL 168 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHh
Confidence 566666655 346666666666666655421 223333332 334455555566666666665 34555555555
Q ss_pred hCCCCCCh----------------HHHHHhhh-ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHHHH
Q 045555 75 TSNIRRDE----------------FTTVRILT-TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGL 137 (175)
Q Consensus 75 ~~~~~p~~----------------~~~~~l~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 137 (175)
+.. .++. .....++. -..++..+-...+.++++.|+..-...+.+.+..++ ..-..+.++
T Consensus 169 ~d~-~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~AL 245 (280)
T PRK09687 169 KDP-NGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAA 245 (280)
T ss_pred cCC-CHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHH
Confidence 431 1111 11111111 112355666778888888888554444555444444 345688889
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhhhcCC
Q 045555 138 AISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTHN 175 (175)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 175 (175)
...|.. +|...+.++.+. .||...-...+.+|.++
T Consensus 246 g~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~~ 280 (280)
T PRK09687 246 GELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLKRS 280 (280)
T ss_pred HhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHhcC
Confidence 998885 789999888864 46888888888888753
No 294
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.13 E-value=13 Score=25.96 Aligned_cols=93 Identities=14% Similarity=0.055 Sum_probs=63.8
Q ss_pred HHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHH
Q 045555 54 IDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133 (175)
Q Consensus 54 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 133 (175)
-+-+.+.|++++|..-|.+.+.. .|...+- .-...|..-..++.+.+.++.|..-..+.++.+..---++
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~--cp~~~~e--------~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl 171 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES--CPSTSTE--------ERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL 171 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh--CccccHH--------HHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence 34467889999999999888874 3332221 1234556667788888999888887777766544333333
Q ss_pred H---HHHHhcCChhHHHHHHHHHHHC
Q 045555 134 I---VGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 134 i---~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
. .+|-+..++++|++-|+.+++.
T Consensus 172 ~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 172 ERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 3 4677788899999999888765
No 295
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=83.02 E-value=0.88 Score=34.98 Aligned_cols=129 Identities=14% Similarity=0.084 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhhcCCC---------CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHH
Q 045555 17 ISWTTIVSGYINRGQVDIARQYFAQMPE---------RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVR 87 (175)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 87 (175)
.+|-.|-+.|--.|+++.|....+.-.+ .....++.|-++++-.|+++.|.+.|..-...-++....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r---- 271 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNR---- 271 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcch----
Confidence 3566666666678899999886654321 134568899999999999999999988764432211111
Q ss_pred hhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC---------CChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 045555 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR---------KDKFTWTAMIVGLAISGHGDTALDMFSQML 154 (175)
Q Consensus 88 l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (175)
.....++-+|..+|.-..++++|...+..-.. -....|-++..+|...|.-++|......-+
T Consensus 272 -----~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 272 -----TVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred -----hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 11233445788899989999999998887521 144566778888888888888876655443
No 296
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.97 E-value=16 Score=26.73 Aligned_cols=124 Identities=12% Similarity=0.056 Sum_probs=83.5
Q ss_pred HHHHHHHHHhcCChhHHHHHhhcCCCC----------ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHh
Q 045555 19 WTTIVSGYINRGQVDIARQYFAQMPER----------DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRI 88 (175)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~~----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 88 (175)
++.+++.+.-....++-...++.=..| -..+.+.+++.+...|.+.-....+++..+...+.+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~------- 211 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQE------- 211 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCccc-------
Confidence 555666655544444444444443332 234567788888888888888889998888654333
Q ss_pred hhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC----CChhhHHHHH-----HHHHhcCChhHHHHHHHHHHHC
Q 045555 89 LTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR----KDKFTWTAMI-----VGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 89 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li-----~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
+.....|...--+.||.+.|...|+...+ .|..+.+.++ ..|..++++.+|...|.+....
T Consensus 212 -------p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~ 281 (366)
T KOG2796|consen 212 -------PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM 281 (366)
T ss_pred -------HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhcccc
Confidence 33346788888899999999999997632 2444444433 3466678999999999887754
No 297
>PRK11906 transcriptional regulator; Provisional
Probab=82.91 E-value=21 Score=28.07 Aligned_cols=97 Identities=14% Similarity=0.067 Sum_probs=67.0
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC--CC-hhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhh
Q 045555 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPE--RD-YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT 90 (175)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 90 (175)
-|+.+...+.....-.++++.|...|++... || ..+|...--.+.-.|+.++|.+.+++..+.. |....-
T Consensus 336 ~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs--P~~~~~----- 408 (458)
T PRK11906 336 VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE--PRRRKA----- 408 (458)
T ss_pred CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--chhhHH-----
Confidence 4777777777777888889999999998764 53 4456555556677899999999999977643 332222
Q ss_pred ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 91 TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 91 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
.+....++.|+ ...+++|.+++.+-.+
T Consensus 409 ------~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 409 ------VVIKECVDMYV-PNPLKNNIKLYYKETE 435 (458)
T ss_pred ------HHHHHHHHHHc-CCchhhhHHHHhhccc
Confidence 22245666777 4567888888776543
No 298
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=82.72 E-value=2.8 Score=17.85 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=20.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 129 TWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
.|..+...+...|++++|...|++.++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 466677777788888888888877664
No 299
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=82.44 E-value=21 Score=27.69 Aligned_cols=83 Identities=13% Similarity=0.173 Sum_probs=53.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHhCC-CCCChHHHH--Hhhh----------------------ccCcchh-HHHHH
Q 045555 49 LWTAMIDGYLRVNRFREALTLFREMQTSN-IRRDEFTTV--RILT----------------------TFNNDIF-VGIAL 102 (175)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~--~l~~----------------------~~~~~~~-~~~~l 102 (175)
.+...+...|..|+|++|+++.+.-+... +.++..--. .++. ...||.. .--..
T Consensus 190 A~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~A 269 (531)
T COG3898 190 AARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVA 269 (531)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHH
Confidence 46788999999999999999999887654 345443221 1222 2333321 12235
Q ss_pred HHHHHhcCCHHHHHHHHHhh--cCCChhhHH
Q 045555 103 IDMYCKCGDVEKAQRVFWKM--LRKDKFTWT 131 (175)
Q Consensus 103 i~~~~~~~~~~~a~~~~~~~--~~~~~~~~~ 131 (175)
..++.+.|++.++-.+++.+ .+|....+.
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~ePHP~ia~ 300 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEPHPDIAL 300 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCCChHHHH
Confidence 56778888888888888887 334444443
No 300
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.31 E-value=14 Score=25.61 Aligned_cols=79 Identities=15% Similarity=0.097 Sum_probs=52.6
Q ss_pred HHhcCChhHHHHHhhcCCC-C--ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHH
Q 045555 26 YINRGQVDIARQYFAQMPE-R--DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIAL 102 (175)
Q Consensus 26 ~~~~~~~~~a~~~~~~m~~-~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~l 102 (175)
+.+.|+ +.|+..|-.+.. | +....-.-+..|--..+.++++.++.+.+...-.- -.+++..+.+|
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~-----------~~~n~eil~sL 184 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPD-----------DNFNPEILKSL 184 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-----------CCCCHHHHHHH
Confidence 344555 566666666654 2 22333344445555789999999999988753211 14556677899
Q ss_pred HHHHHhcCCHHHHH
Q 045555 103 IDMYCKCGDVEKAQ 116 (175)
Q Consensus 103 i~~~~~~~~~~~a~ 116 (175)
.+.|-+.|+++.|.
T Consensus 185 as~~~~~~~~e~AY 198 (203)
T PF11207_consen 185 ASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHhcchhhhh
Confidence 99999999999885
No 301
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.99 E-value=16 Score=29.90 Aligned_cols=59 Identities=15% Similarity=0.110 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhcCC---------------------CCChhHHHHHHHHHhccCChHHHHHHHHHhHhC
Q 045555 18 SWTTIVSGYINRGQVDIARQYFAQMP---------------------ERDYVLWTAMIDGYLRVNRFREALTLFREMQTS 76 (175)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~---------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (175)
.-+.+.+.+-+.|..++|+++--.-- ..+..-|..|-.+....|++..|.+.|......
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~D~d~rFelal~lgrl~iA~~la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELSTDPDQRFELALKLGRLDIAFDLAVEANSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCCChhhhhhhhhhcCcHHHHHHHHHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 44566666666666666665432111 013444666666666666666666666665553
No 302
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=81.82 E-value=8.6 Score=23.67 Aligned_cols=55 Identities=15% Similarity=0.275 Sum_probs=40.5
Q ss_pred HHHHHHHHhcCChhHHHHHhhcCCC----------CChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 20 TTIVSGYINRGQVDIARQYFAQMPE----------RDYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 20 ~~li~~~~~~~~~~~a~~~~~~m~~----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
++++.+|... +......+++.=.. ....-|..|+.-|...|..++|++++.++..
T Consensus 3 TaLlk~Yl~~-~~~~l~~llr~~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 3 TALLKCYLET-NPSLLGPLLRLPNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHh-CHHHHHHHHccCCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4677777777 66666665553211 1233589999999999999999999999988
No 303
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.72 E-value=21 Score=27.15 Aligned_cols=126 Identities=10% Similarity=0.079 Sum_probs=84.6
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChh--HH--HHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHH
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYV--LW--TAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVR 87 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~--~~--~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 87 (175)
|..+++-.-.++.-.|+.+.....++++.. +|.. +| ..+.-++...|-+++|.+.-++..+.+
T Consensus 136 Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN---------- 205 (491)
T KOG2610|consen 136 DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQIN---------- 205 (491)
T ss_pred hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCC----------
Confidence 666777777788888888888888887764 3432 22 333445667788999988888877754
Q ss_pred hhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC-------ChhhHHHHHHHHHhcCChhHHHHHHHH-HHH
Q 045555 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK-------DKFTWTAMIVGLAISGHGDTALDMFSQ-MLR 155 (175)
Q Consensus 88 l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~a~~~~~~-m~~ 155 (175)
+.|+-.-.+....+.-.|+..++.++..+-... -...|=...-.+...+.++.|+++|+. |..
T Consensus 206 -----~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~k 276 (491)
T KOG2610|consen 206 -----RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREIWK 276 (491)
T ss_pred -----CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHHHH
Confidence 334555567888888899999998888765321 112233333344556899999999954 443
No 304
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=81.69 E-value=20 Score=27.03 Aligned_cols=65 Identities=8% Similarity=0.041 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhc-------CCChhhHHH--HHHHHHhcCChhHHHHHHHHHHH-----CCCCCcHHH
Q 045555 100 IALIDMYCKCGDVEKAQRVFWKML-------RKDKFTWTA--MIVGLAISGHGDTALDMFSQMLR-----ASIRLDEVT 164 (175)
Q Consensus 100 ~~li~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t 164 (175)
..++....+.++.++|.+..+++. +|+.+.|-. +...+...|+..++.+.+.+..+ -|++|+..+
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~ 157 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHS 157 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhh
Confidence 356667777889999999999983 466666644 55667789999999999988877 688886554
No 305
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=81.06 E-value=19 Score=26.40 Aligned_cols=52 Identities=15% Similarity=0.111 Sum_probs=31.7
Q ss_pred HHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhC
Q 045555 23 VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS 76 (175)
Q Consensus 23 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (175)
+...-+.++.....+.+..++ ....-...+..+...|++.+|+++..+..+.
T Consensus 105 l~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~ 156 (291)
T PF10475_consen 105 LRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQL 156 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 333334444444444444332 3344456677788899999999999888763
No 306
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=80.91 E-value=13 Score=24.30 Aligned_cols=72 Identities=11% Similarity=0.061 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhhcCCC---------CChhHHHHHHHHHhccCC-hHHHHHHHHHhHhCCCCCChHHHH
Q 045555 17 ISWTTIVSGYINRGQVDIARQYFAQMPE---------RDYVLWTAMIDGYLRVNR-FREALTLFREMQTSNIRRDEFTTV 86 (175)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---------~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~ 86 (175)
...|.++.-....+++.-..++++.+.. .+..+|.+++.+.++... ---+..+|+-|++.+.++++..|.
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 3567888887888888888888887752 366689999999988877 556788999999988888777774
Q ss_pred Hh
Q 045555 87 RI 88 (175)
Q Consensus 87 ~l 88 (175)
.+
T Consensus 120 ~l 121 (145)
T PF13762_consen 120 CL 121 (145)
T ss_pred HH
Confidence 33
No 307
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=80.88 E-value=4.5 Score=29.77 Aligned_cols=40 Identities=15% Similarity=0.153 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHH
Q 045555 47 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTV 86 (175)
Q Consensus 47 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 86 (175)
..-|+.-|..-.+.||+++|+.+++|.++.|+.--..+|.
T Consensus 257 e~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 257 ESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 3448899999999999999999999999999866555554
No 308
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=80.70 E-value=9.1 Score=26.74 Aligned_cols=90 Identities=17% Similarity=0.215 Sum_probs=66.5
Q ss_pred HHHHHhcCChhHHHHHhhcCCC--C------ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCc
Q 045555 23 VSGYINRGQVDIARQYFAQMPE--R------DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN 94 (175)
Q Consensus 23 i~~~~~~~~~~~a~~~~~~m~~--~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 94 (175)
.+-+.+.|++++|.+-|....+ | -.+.|..-..++.+.+.++.|+.--.+..+.+. ||...+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-----ty~kAl----- 171 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-----TYEKAL----- 171 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-----hhHHHH-----
Confidence 3456788999999999997654 2 234577777889999999999998888877553 222111
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhhcCCCh
Q 045555 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDK 127 (175)
Q Consensus 95 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 127 (175)
-.-..+|.+...+++|..=++.+.+.|+
T Consensus 172 -----~RRAeayek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 172 -----ERRAEAYEKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred -----HHHHHHHHhhhhHHHHHHHHHHHHHhCc
Confidence 2345689999999999999999966443
No 309
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=80.69 E-value=3.6 Score=28.31 Aligned_cols=71 Identities=8% Similarity=0.185 Sum_probs=46.2
Q ss_pred HHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 045555 51 TAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWK 121 (175)
Q Consensus 51 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 121 (175)
-.++..|.+.-+|.++..+++.|.+..+.-+..--..=-....+-..+.|...+.|.+.|.+|.|..++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 35667788888999999999999775442211000000002234456677888888888888888888775
No 310
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.57 E-value=12 Score=27.94 Aligned_cols=94 Identities=17% Similarity=0.180 Sum_probs=61.0
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC-C------ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHH
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE-R------DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVR 87 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 87 (175)
...+....+..-.+..+++.+...+-+++. | +... .++++- +-.-++++++.++..=.+.|+
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irl-llky~pq~~i~~l~npIqYGi--------- 131 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRL-LLKYDPQKAIYTLVNPIQYGI--------- 131 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHH-HHccChHHHHHHHhCcchhcc---------
Confidence 344555566666667777887777776663 2 2221 222222 233456677777776666665
Q ss_pred hhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 88 l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
.||..++..+|+.+.+.+++.+|.++--.|..
T Consensus 132 -----F~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 132 -----FPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred -----ccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 56666668999999999999998888777744
No 311
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=80.49 E-value=12 Score=23.68 Aligned_cols=57 Identities=12% Similarity=0.211 Sum_probs=40.8
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 045555 50 WTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWK 121 (175)
Q Consensus 50 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 121 (175)
|-.+--.|+..-+ ++.++|..|...|+.-.. ...|......+...|++++|.++|..
T Consensus 68 ylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~-------------A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 68 YLKIWIKYADLSS--DPREIFKFLYSKGIGTKL-------------ALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTB-------------HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcc--CHHHHHHHHHHcCccHHH-------------HHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3333334444333 999999999999985443 34467888899999999999999874
No 312
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=80.28 E-value=17 Score=25.19 Aligned_cols=55 Identities=24% Similarity=0.176 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcC------------------CChhhHHHHHHHHHhcCChhHHHHHHHH
Q 045555 98 VGIALIDMYCKCGDVEKAQRVFWKMLR------------------KDKFTWTAMIVGLAISGHGDTALDMFSQ 152 (175)
Q Consensus 98 ~~~~li~~~~~~~~~~~a~~~~~~~~~------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~ 152 (175)
+--+++..|-+..+|.+..++++.|.+ +.-+.-|.-...+.+.|.++.|..++++
T Consensus 134 iGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 134 IGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 445788899999999999999999832 1335678888999999999999999985
No 313
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.14 E-value=36 Score=28.98 Aligned_cols=81 Identities=19% Similarity=0.277 Sum_probs=49.1
Q ss_pred HHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHH
Q 045555 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDM 105 (175)
Q Consensus 26 ~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~ 105 (175)
+-+.|++++|..-|-+-..--.. .-+|.-|.......+-...++.+.+.|+.-...+ +.|+.+
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dht---------------tlLLnc 440 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHT---------------TLLLNC 440 (933)
T ss_pred HHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHHHHHHHHHHHHHHHHcccccchhH---------------HHHHHH
Confidence 34678888887777664431111 1234455566666666667777777765433222 368888
Q ss_pred HHhcCCHHHHHHHHHhhc
Q 045555 106 YCKCGDVEKAQRVFWKML 123 (175)
Q Consensus 106 ~~~~~~~~~a~~~~~~~~ 123 (175)
|.+.++.++-.++.+.-.
T Consensus 441 YiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 441 YIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHhcchHHHHHHHhcCC
Confidence 888888777766666543
No 314
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=78.71 E-value=18 Score=24.60 Aligned_cols=53 Identities=17% Similarity=0.104 Sum_probs=39.0
Q ss_pred HHHHHhcCCHHHHHHHHHhh-----cCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 103 IDMYCKCGDVEKAQRVFWKM-----LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 103 i~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
+.......+.+......+.. ..|+..+|..++.++...|+.++|.++.+++..
T Consensus 115 l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 115 LLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333555555544444443 348999999999999999999999999999875
No 315
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=77.92 E-value=14 Score=27.35 Aligned_cols=82 Identities=10% Similarity=0.229 Sum_probs=52.0
Q ss_pred chHHHHhhccCC-------CcHHHHHHHHHHHHhcCC----hhHHHHHhhcCCC-----C-ChhHHHHHHHHHhccCC--
Q 045555 2 GFALEIFGNMKN-------KDVISWTTIVSGYINRGQ----VDIARQYFAQMPE-----R-DYVLWTAMIDGYLRVNR-- 62 (175)
Q Consensus 2 ~~A~~~~~~m~~-------~~~~~~~~li~~~~~~~~----~~~a~~~~~~m~~-----~-~~~~~~~li~~~~~~~~-- 62 (175)
.+|.++|+.|++ ++-..+.+++.. ..++ .+.+..+|+.+.+ . +....+.++..+-....
T Consensus 120 ~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~ 197 (297)
T PF13170_consen 120 QRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEK 197 (297)
T ss_pred HHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHH
Confidence 468889999986 455566666555 3333 3446667776654 2 33444444444333333
Q ss_pred hHHHHHHHHHhHhCCCCCChHHH
Q 045555 63 FREALTLFREMQTSNIRRDEFTT 85 (175)
Q Consensus 63 ~~~a~~~~~~m~~~~~~p~~~~~ 85 (175)
...+.++++.+.+.|+++....|
T Consensus 198 v~r~~~l~~~l~~~~~kik~~~y 220 (297)
T PF13170_consen 198 VARVIELYNALKKNGVKIKYMHY 220 (297)
T ss_pred HHHHHHHHHHHHHcCCccccccc
Confidence 34789999999999988777767
No 316
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=77.78 E-value=25 Score=25.85 Aligned_cols=78 Identities=13% Similarity=0.213 Sum_probs=60.5
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-----CChhhHHHHHHHHHhcCChhHHHHHHHH-----HHHCCCCCcH
Q 045555 93 NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR-----KDKFTWTAMIVGLAISGHGDTALDMFSQ-----MLRASIRLDE 162 (175)
Q Consensus 93 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~-----m~~~g~~p~~ 162 (175)
.++..+...+++.+++.++|..-.++++.-.. .|...|..+|+.-...|+..-..++.++ +.+.|+..+.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~ 278 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTD 278 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCH
Confidence 34445556899999999999999999998743 3888999999999999999888888776 2344666666
Q ss_pred HHHHHHHh
Q 045555 163 VTYVGVLS 170 (175)
Q Consensus 163 ~t~~~ll~ 170 (175)
..-..|-.
T Consensus 279 ~L~~~L~~ 286 (292)
T PF13929_consen 279 ELRSQLSE 286 (292)
T ss_pred HHHHHHHH
Confidence 65555443
No 317
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=77.19 E-value=14 Score=22.69 Aligned_cols=28 Identities=11% Similarity=0.156 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 128 FTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
.-|..++.-|...|..++|.+++.++.+
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4689999999999999999999999987
No 318
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=77.18 E-value=14 Score=28.34 Aligned_cols=126 Identities=7% Similarity=0.037 Sum_probs=79.4
Q ss_pred HHHHHHHhcCChhHHHHHhhcCCC-------C--ChhHHHHHHHHHhccCChHHHHHHHHHhHhC--CCCCChHHHHHhh
Q 045555 21 TIVSGYINRGQVDIARQYFAQMPE-------R--DYVLWTAMIDGYLRVNRFREALTLFREMQTS--NIRRDEFTTVRIL 89 (175)
Q Consensus 21 ~li~~~~~~~~~~~a~~~~~~m~~-------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~l~ 89 (175)
++-.+....+.++++++.|+...+ | ...++..|-.-|.+..++++|.-...+.... .+..+....
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~---- 202 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL---- 202 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH----
Confidence 455556666777777777776432 1 3456788888888888888887766655432 111110000
Q ss_pred hccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC---------ChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 045555 90 TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK---------DKFTWTAMIVGLAISGHGDTALDMFSQM 153 (175)
Q Consensus 90 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~a~~~~~~m 153 (175)
..-....-.+.-++...|++.+|.+.-++..+- ...+.-.+.+.|...|+.+.|+.-|++.
T Consensus 203 ---kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 203 ---KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred ---HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 001111224566778889988888888876331 3345567888999999999998888764
No 319
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=77.09 E-value=36 Score=27.22 Aligned_cols=96 Identities=15% Similarity=0.149 Sum_probs=64.4
Q ss_pred cCChHHHHHHHHHhHhCC---CCCChHHHH--H---hhh--ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C--
Q 045555 60 VNRFREALTLFREMQTSN---IRRDEFTTV--R---ILT--TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-- 125 (175)
Q Consensus 60 ~~~~~~a~~~~~~m~~~~---~~p~~~~~~--~---l~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-- 125 (175)
.....++.+++++..+.| ...+..... . .+. ...+-..+--.+..+..+.|+.++|.+.|.+|.+ |
T Consensus 213 A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~ 292 (539)
T PF04184_consen 213 ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL 292 (539)
T ss_pred ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc
Confidence 445788999999887765 222111110 0 000 1111123334577777899999999999999954 3
Q ss_pred -ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 126 -DKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 126 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
...+...++.++...+.+.++..++.+-.+
T Consensus 293 ~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 293 DNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred chhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 234677899999999999999999988754
No 320
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=76.83 E-value=8 Score=21.43 Aligned_cols=32 Identities=9% Similarity=0.091 Sum_probs=16.4
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC
Q 045555 94 NDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK 125 (175)
Q Consensus 94 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 125 (175)
|....++-+++.+++..-.+++...+.+..+.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~ 37 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQR 37 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444555555555555555555555555443
No 321
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.83 E-value=6.9 Score=22.65 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=35.8
Q ss_pred HHHHHhcCCHHHHHHHHHhhcCC------ChhhHHHHHHHHHhcCChhHHHHHH
Q 045555 103 IDMYCKCGDVEKAQRVFWKMLRK------DKFTWTAMIVGLAISGHGDTALDMF 150 (175)
Q Consensus 103 i~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~ 150 (175)
+..| ....-++|...|....+. -..+...++.+|+..|++.++++.-
T Consensus 14 lkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 14 LKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344 567788888888888543 3457889999999999999987763
No 322
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.80 E-value=24 Score=24.48 Aligned_cols=92 Identities=9% Similarity=0.046 Sum_probs=69.5
Q ss_pred HHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChhh--HH
Q 045555 54 IDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFT--WT 131 (175)
Q Consensus 54 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~ 131 (175)
...+...+++++|..-++..+.. |....+..++ --.|.......|.+|+|...++....++... ..
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~---------~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~e 163 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALA---------ALRLARVQLQQKKADAALKTLDTIKEESWAAIVAE 163 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHH---------HHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHH
Confidence 44578889999999999887753 2222222221 1357777889999999999999988885443 45
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC
Q 045555 132 AMIVGLAISGHGDTALDMFSQMLRAS 157 (175)
Q Consensus 132 ~li~~~~~~g~~~~a~~~~~~m~~~g 157 (175)
.-.+.+...|+-++|..-|.+.++.+
T Consensus 164 lrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 164 LRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 55678999999999999999999876
No 323
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=75.76 E-value=28 Score=26.55 Aligned_cols=91 Identities=12% Similarity=0.126 Sum_probs=53.3
Q ss_pred HHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCC---hhhHH
Q 045555 55 DGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKD---KFTWT 131 (175)
Q Consensus 55 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~ 131 (175)
+-|.+.|.+++|++.|..-... .| .+..++..-..+|.+.+++..|+.-....+..| +..|.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P-------------~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYS 169 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YP-------------HNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYS 169 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CC-------------CCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 3477889999999998877663 23 133444667778888888888777666554332 22333
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCcH
Q 045555 132 AMIVGLAISGHGDTALDMFSQMLRASIRLDE 162 (175)
Q Consensus 132 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 162 (175)
--+.+--..|...+|.+-++..++ +.|+.
T Consensus 170 RR~~AR~~Lg~~~EAKkD~E~vL~--LEP~~ 198 (536)
T KOG4648|consen 170 RRMQARESLGNNMEAKKDCETVLA--LEPKN 198 (536)
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHh--hCccc
Confidence 333333334445555554444443 45553
No 324
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=75.11 E-value=37 Score=26.41 Aligned_cols=67 Identities=15% Similarity=0.133 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhhcC-----C--------------------------------------Chh-hHHH
Q 045555 97 FVGIALIDMYCKCGDVEKAQRVFWKMLR-----K--------------------------------------DKF-TWTA 132 (175)
Q Consensus 97 ~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~--------------------------------------~~~-~~~~ 132 (175)
..+.+.++..+..|+|+.|.++.+.-.. + |.. .--.
T Consensus 189 WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~ 268 (531)
T COG3898 189 WAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVV 268 (531)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHH
Confidence 3556899999999999999999987521 1 111 1112
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHH
Q 045555 133 MIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165 (175)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 165 (175)
-..++.+.|+..++-.+++.+=+. .|.+.+.
T Consensus 269 AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia 299 (531)
T COG3898 269 AARALFRDGNLRKGSKILETAWKA--EPHPDIA 299 (531)
T ss_pred HHHHHHhccchhhhhhHHHHHHhc--CCChHHH
Confidence 335788889999999988888665 4444433
No 325
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=75.00 E-value=3.6 Score=33.23 Aligned_cols=64 Identities=9% Similarity=0.109 Sum_probs=28.8
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHhhcCCCC--ChhHHHHHHHHHhccCChHHHHHHHHHhHhCC
Q 045555 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPER--DYVLWTAMIDGYLRVNRFREALTLFREMQTSN 77 (175)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 77 (175)
++...-..++..|.+.|..+.|.++.+.+-.. ...-|..-+..+.++|+...+-.+-+.+.+..
T Consensus 403 ~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~ 468 (566)
T PF07575_consen 403 DTNDDAEKLLEICAELGLEDVAREICKILGQRLLKEGRYGEALSWFIRAGDYSLVTRIADRLLEEY 468 (566)
T ss_dssp -SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 45556677777788888888888877766543 22345666666777777777666666665443
No 326
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=74.90 E-value=13 Score=25.25 Aligned_cols=56 Identities=7% Similarity=-0.027 Sum_probs=41.7
Q ss_pred HHHHHHHhcCChhHHHHHhhcCC-----CCChhHHHHHHHHHhccCChHHHHHHHHHhHhC
Q 045555 21 TIVSGYINRGQVDIARQYFAQMP-----ERDYVLWTAMIDGYLRVNRFREALTLFREMQTS 76 (175)
Q Consensus 21 ~li~~~~~~~~~~~a~~~~~~m~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (175)
..+......++.+......+... .|+..+|..++..+...|+.++|.+...++...
T Consensus 113 ~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 113 ALLLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33333345666555555444443 389999999999999999999999999999875
No 327
>PLN03025 replication factor C subunit; Provisional
Probab=74.82 E-value=32 Score=25.54 Aligned_cols=99 Identities=14% Similarity=0.117 Sum_probs=55.1
Q ss_pred HHHHHHHHHh-HhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhc-CCHHHHHHHHHhhcCCChhhHHHHHHHHHhcC
Q 045555 64 REALTLFREM-QTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKC-GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISG 141 (175)
Q Consensus 64 ~~a~~~~~~m-~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 141 (175)
++....+.+. .+.|+..+......++.....|.......+++.... +... ...+++-...+....-..+++... .+
T Consensus 161 ~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~~~~~i~-~~~v~~~~~~~~~~~i~~~i~~~~-~~ 238 (319)
T PLN03025 161 QEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFGFVN-QENVFKVCDQPHPLHVKNIVRNCL-KG 238 (319)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHcCCCCHHHHHHHHHHHH-cC
Confidence 3444444443 344666666666666665666655544455543221 1111 111122122333444455565554 58
Q ss_pred ChhHHHHHHHHHHHCCCCCcHHH
Q 045555 142 HGDTALDMFSQMLRASIRLDEVT 164 (175)
Q Consensus 142 ~~~~a~~~~~~m~~~g~~p~~~t 164 (175)
++++|...+.+|...|+.|....
T Consensus 239 ~~~~a~~~l~~ll~~g~~~~~Il 261 (319)
T PLN03025 239 KFDDACDGLKQLYDLGYSPTDII 261 (319)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH
Confidence 99999999999999999997543
No 328
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=74.61 E-value=26 Score=29.25 Aligned_cols=72 Identities=17% Similarity=0.194 Sum_probs=54.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhcCC------ChhhHHHHHHHHHhcCChhH--HHHHHHHHHH-CCCCCcHHHHHHHHhh
Q 045555 101 ALIDMYCKCGDVEKAQRVFWKMLRK------DKFTWTAMIVGLAISGHGDT--ALDMFSQMLR-ASIRLDEVTYVGVLSA 171 (175)
Q Consensus 101 ~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~--a~~~~~~m~~-~g~~p~~~t~~~ll~~ 171 (175)
+|+++|..+|++..+.++++..... =...||..|+...+.|.++- ..+-..+.++ .-+..|..||..++++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 7999999999999999999988432 34578999999999997643 3333333333 3578899999998876
Q ss_pred h
Q 045555 172 C 172 (175)
Q Consensus 172 ~ 172 (175)
-
T Consensus 113 s 113 (1117)
T COG5108 113 S 113 (1117)
T ss_pred h
Confidence 3
No 329
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=73.75 E-value=27 Score=24.15 Aligned_cols=102 Identities=15% Similarity=0.153 Sum_probs=61.1
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC------CChhHHHHHHH-HHhccCC--hHHHHHHHHHhHhCCCCCChHHH
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE------RDYVLWTAMID-GYLRVNR--FREALTLFREMQTSNIRRDEFTT 85 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~------~~~~~~~~li~-~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~ 85 (175)
..+-++...-.....|++++|..-++.+.+ .-...|..+.. +++..+. +-+|..++.-+... -.|++--.
T Consensus 28 ei~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~-~~ps~~EL 106 (204)
T COG2178 28 EIVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG-RLPSPEEL 106 (204)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC-CCCCHHHc
Confidence 444667777777788999999999998875 24445666666 6777765 55666666555444 33332211
Q ss_pred HHhhhccCcchhHHHHH----------HHHHHhcCCHHHHHHHHHhhc
Q 045555 86 VRILTTFNNDIFVGIAL----------IDMYCKCGDVEKAQRVFWKML 123 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~~l----------i~~~~~~~~~~~a~~~~~~~~ 123 (175)
+++|-. ..+-+ +--..+.|+++.|++.++-|-
T Consensus 107 -----~V~~~~-YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME 148 (204)
T COG2178 107 -----GVPPIA-YILGLADAVGELRRHVLELLRKGSFEEAERFLKFME 148 (204)
T ss_pred -----CCCHHH-HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 011111 11111 112346889999999998884
No 330
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=72.80 E-value=9 Score=24.26 Aligned_cols=68 Identities=12% Similarity=0.169 Sum_probs=42.2
Q ss_pred hHHHHhhccCC-CcHHHHHHHHHHHHhcCChhHHHHHhhcCCCC-----ChhHHHHHHHHHhccCChHHHHHHHHH
Q 045555 3 FALEIFGNMKN-KDVISWTTIVSGYINRGQVDIARQYFAQMPER-----DYVLWTAMIDGYLRVNRFREALTLFRE 72 (175)
Q Consensus 3 ~A~~~~~~m~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~ 72 (175)
++.+.|..-++ .|-.-|-.+-..|++.-+ .+.++|+.|.+. -..-|......+...|++++|.++|..
T Consensus 51 r~~~~f~~~~~Y~nD~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 51 RCIRKFKDDERYKNDERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHTTSGGGTT-HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHhhhHhhcCCHHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34445544433 333333333334444333 888899888753 444588888888999999999999875
No 331
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=72.62 E-value=11 Score=19.29 Aligned_cols=34 Identities=21% Similarity=0.124 Sum_probs=25.7
Q ss_pred HHhccCChHHHHHHHHHhHhCCCCCChHHHHHhh
Q 045555 56 GYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89 (175)
Q Consensus 56 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 89 (175)
..-+.|-.+++...+++|.+.|+..++..+..++
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4456788889999999999999877766664443
No 332
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=72.57 E-value=27 Score=27.21 Aligned_cols=58 Identities=16% Similarity=0.133 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCChhHHHHHhhcCCC-------CChhHHHHHHHHHhccCChHHHHHHHHHhHhC
Q 045555 19 WTTIVSGYINRGQVDIARQYFAQMPE-------RDYVLWTAMIDGYLRVNRFREALTLFREMQTS 76 (175)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (175)
+..-.+-..+.|.+..|.+.|.+... ++...|........+.|+.++|+.--+.....
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i 316 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI 316 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc
Confidence 33344455688999999999998764 35566888888889999999999988887764
No 333
>PRK11906 transcriptional regulator; Provisional
Probab=72.18 E-value=47 Score=26.26 Aligned_cols=135 Identities=10% Similarity=0.007 Sum_probs=84.1
Q ss_pred chHHHHhhccC---C--Cc-HHHHHHHHHHHHh---------cCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCCh
Q 045555 2 GFALEIFGNMK---N--KD-VISWTTIVSGYIN---------RGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRF 63 (175)
Q Consensus 2 ~~A~~~~~~m~---~--~~-~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~ 63 (175)
+.|+.+|++.. + |+ ...|..+..++.. ..+..+|.++-+...+ .|......+..+....+++
T Consensus 275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~ 354 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQA 354 (458)
T ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcch
Confidence 45777888777 4 32 3444444443332 2234445555555443 4777777777777888889
Q ss_pred HHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCC-----hhhHHHHHHHHH
Q 045555 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKD-----KFTWTAMIVGLA 138 (175)
Q Consensus 64 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~li~~~~ 138 (175)
+.|...|++....+ |+ ....|-...-...-.|+.++|.+.++...+.+ .......++.|+
T Consensus 355 ~~a~~~f~rA~~L~--Pn-------------~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~ 419 (458)
T PRK11906 355 KVSHILFEQAKIHS--TD-------------IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV 419 (458)
T ss_pred hhHHHHHHHHhhcC--Cc-------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc
Confidence 99999999998854 33 12223334444566899999999999965433 334444455666
Q ss_pred hcCChhHHHHHHHH
Q 045555 139 ISGHGDTALDMFSQ 152 (175)
Q Consensus 139 ~~g~~~~a~~~~~~ 152 (175)
. ..+++|.++|-+
T Consensus 420 ~-~~~~~~~~~~~~ 432 (458)
T PRK11906 420 P-NPLKNNIKLYYK 432 (458)
T ss_pred C-CchhhhHHHHhh
Confidence 4 467888888654
No 334
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=72.06 E-value=3.2 Score=26.67 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=22.5
Q ss_pred HHhccCChHHHHHHHHHhHhCCCCCCh
Q 045555 56 GYLRVNRFREALTLFREMQTSNIRRDE 82 (175)
Q Consensus 56 ~~~~~~~~~~a~~~~~~m~~~~~~p~~ 82 (175)
.....|.-.+|..+|..|+++|-.||.
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd 130 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD 130 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc
Confidence 345567888999999999999988873
No 335
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.42 E-value=43 Score=28.58 Aligned_cols=55 Identities=11% Similarity=0.166 Sum_probs=41.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 045555 100 IALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML 154 (175)
Q Consensus 100 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (175)
.-++..+.+..+.+.+.++.+..-+.+...|..+++.+++.+..+.-.+...+.+
T Consensus 709 ~dl~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 709 QDLMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred HHHHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 3567777788888888888877766788899999999999886666555444443
No 336
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=70.57 E-value=34 Score=25.48 Aligned_cols=67 Identities=15% Similarity=0.215 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCcHHH
Q 045555 98 VGIALIDMYCKCGDVEKAQRVFWKMLR---KDKFTWTAMIVGLAISGHGDTALDMFSQMLR-----ASIRLDEVT 164 (175)
Q Consensus 98 ~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t 164 (175)
+.+.....|.++|.+.+|.++.+.... .+...|-.++..++..|+--.|.+-++.+.+ -|+..|-..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 445677889999999999999999854 3778899999999999998888777777642 366655443
No 337
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.54 E-value=18 Score=20.93 Aligned_cols=49 Identities=18% Similarity=0.116 Sum_probs=35.7
Q ss_pred ccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHH
Q 045555 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119 (175)
Q Consensus 59 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 119 (175)
...+.++|+..++..++.-..|.. -| .+...++.+|+..|++.++.+.-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~-rf-----------~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDRED-RF-----------RVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHH-HH-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788999999998886433221 12 24468999999999999887653
No 338
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=69.85 E-value=27 Score=27.91 Aligned_cols=92 Identities=14% Similarity=0.100 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCC-CChHHHHHhhhc
Q 045555 16 VISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR-RDEFTTVRILTT 91 (175)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~ 91 (175)
++..-..-..+...|+++.+......... ....+-.++++...+.|++++|...-+-|+...++ |...+.
T Consensus 323 p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~i------ 396 (831)
T PRK15180 323 PVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTV------ 396 (831)
T ss_pred chhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheee------
Confidence 33333334445677899998888776543 46677889999999999999999999999888764 222222
Q ss_pred cCcchhHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 045555 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123 (175)
Q Consensus 92 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 123 (175)
..-.--..|-++++...|+.+.
T Consensus 397 ----------aa~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 397 ----------AAGSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred ----------ecccHHHHhHHHHHHHHHHHHh
Confidence 2222344677888998888873
No 339
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=68.92 E-value=13 Score=21.69 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=27.4
Q ss_pred HHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHH
Q 045555 26 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66 (175)
Q Consensus 26 ~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a 66 (175)
-+...+.+++..+.+.++.+...+|....+++-..|...-|
T Consensus 40 ~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 40 QAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 33455567777777777777777777777777776654433
No 340
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=68.87 E-value=25 Score=26.09 Aligned_cols=58 Identities=9% Similarity=0.076 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 18 SWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
+++...+.|..+|.+.+|.++-+.... -+...|-.|++.+...|+--++..-++.+.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 455666778899999999999998774 3667788999999999998888877777744
No 341
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=68.43 E-value=62 Score=26.19 Aligned_cols=62 Identities=16% Similarity=0.160 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCChhHHHHHhhcCCCCC-----hhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCC
Q 045555 19 WTTIVSGYINRGQVDIARQYFAQMPERD-----YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80 (175)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 80 (175)
...++.-|.+.+++++|..++..|.-.+ -...+.+.+.+.+..--++....++.....-..|
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap 477 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAP 477 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCC
Confidence 4567889999999999999999998432 2345666777777766667777777776654433
No 342
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=68.07 E-value=65 Score=26.27 Aligned_cols=126 Identities=15% Similarity=0.194 Sum_probs=88.7
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC--CChhH-HHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhc
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE--RDYVL-WTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT 91 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (175)
+...|+.+|.---+..+.+.+..++..+.. |.... |-....-=.+.|..+++.++|++-++. +
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-i------------- 109 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-I------------- 109 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-h-------------
Confidence 445677777766666777888888887764 55543 455555556778999999999998875 2
Q ss_pred cCcchhHHHH-HHHHHHhcCCHHHHHHHHHhhcC------CChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 92 FNNDIFVGIA-LIDMYCKCGDVEKAQRVFWKMLR------KDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 92 ~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
+.+...|.. +..+....|+.+.....|+.... .+...|...|+.-..++++.....+|++.++
T Consensus 110 -p~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 110 -PLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred -hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 223333332 33333467777888888877743 2567899999998899999999999998876
No 343
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.61 E-value=63 Score=25.95 Aligned_cols=117 Identities=17% Similarity=0.159 Sum_probs=77.2
Q ss_pred HhcCChhHHHHHhhcCCC-----CC--hh-----HHHHHHHHH-hccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccC
Q 045555 27 INRGQVDIARQYFAQMPE-----RD--YV-----LWTAMIDGY-LRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFN 93 (175)
Q Consensus 27 ~~~~~~~~a~~~~~~m~~-----~~--~~-----~~~~li~~~-~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 93 (175)
.-.|+..+|++-...|++ |. .. .-..++.-| +..+.++.|..-|....+.--..|...+
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~-------- 405 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAF-------- 405 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHH--------
Confidence 347888888888887764 32 21 122333333 4458899999888888775433333322
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHH--------HHHHH--HhcCChhHHHHHHHHHHH
Q 045555 94 NDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA--------MIVGL--AISGHGDTALDMFSQMLR 155 (175)
Q Consensus 94 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------li~~~--~~~g~~~~a~~~~~~m~~ 155 (175)
.-..+...|.+.|+-++-.++.+.+-.++..++.. ++.++ ...+++.+|...+++-++
T Consensus 406 ----~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 406 ----CNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred ----HHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 12357778999999999999999887765554432 22222 268899999999988654
No 344
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=67.15 E-value=26 Score=21.31 Aligned_cols=61 Identities=10% Similarity=0.124 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhcCCCh--hhHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCC
Q 045555 100 IALIDMYCKCGDVEKAQRVFWKMLRKDK--FTWTAMIVGLAISG--HGDTALDMFSQMLRASIRL 160 (175)
Q Consensus 100 ~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p 160 (175)
..++.-|...|+.++|.+.++++..|+. .....++......+ .-+.+..++..+.+.+.-+
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~ 70 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPSQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLIS 70 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GGGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCC
Confidence 3577788888999999999999865511 12222333333221 2233455556666555433
No 345
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=67.00 E-value=22 Score=25.33 Aligned_cols=54 Identities=15% Similarity=0.122 Sum_probs=35.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhcC---------CChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 045555 101 ALIDMYCKCGDVEKAQRVFWKMLR---------KDKFTWTAMIVGLAISGHGDTALDMFSQML 154 (175)
Q Consensus 101 ~li~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (175)
-+..-|.+.|++++|.++|+.+.. ....+...+..+..+.|+.++...+.-+|.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 566667778888888888887721 123344556666777777777776665554
No 346
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=66.72 E-value=59 Score=25.31 Aligned_cols=105 Identities=17% Similarity=0.091 Sum_probs=65.0
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhh--ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 045555 46 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT--TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123 (175)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 123 (175)
+...--.++.++....++.+.++..+.. ..|+...-.-=-+ .....-.....|+..++-.||+..|.++.+.+.
T Consensus 74 ~~~~VLnvL~sLv~kS~I~e~l~~~~~~----~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~id 149 (404)
T PF10255_consen 74 NVYSVLNVLYSLVDKSQINEQLEAEKRG----EDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENID 149 (404)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHhhcc----CCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccC
Confidence 3333345566677777666665555443 2222111000000 001122344578999999999999999999872
Q ss_pred C---------C--ChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 045555 124 R---------K--DKFTWTAMIVGLAISGHGDTALDMFSQML 154 (175)
Q Consensus 124 ~---------~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (175)
- | .+.+|-.+.=+|.-.+++.+|.++|...+
T Consensus 150 l~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 150 LNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred cccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 45567777778889999999999998865
No 347
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=65.90 E-value=52 Score=24.31 Aligned_cols=81 Identities=17% Similarity=0.153 Sum_probs=56.7
Q ss_pred HHHHhccCChHHHHHHHHHhHhCC--CCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC----CCh
Q 045555 54 IDGYLRVNRFREALTLFREMQTSN--IRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR----KDK 127 (175)
Q Consensus 54 i~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~ 127 (175)
|.+++..++|.+++...-+--+.- +.|. +....|-.|+|.+....+.++-..-.. .+.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpk----------------IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~l 153 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPK----------------ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSL 153 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHH----------------HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCc
Confidence 888999999999988776665432 2222 223577788999998888777666522 345
Q ss_pred hhHHHHHHHH-----HhcCChhHHHHHH
Q 045555 128 FTWTAMIVGL-----AISGHGDTALDMF 150 (175)
Q Consensus 128 ~~~~~li~~~-----~~~g~~~~a~~~~ 150 (175)
..|..+.+.| .-.|.+++|+++.
T Consensus 154 p~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 154 PEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred hhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 5677666554 4579999998876
No 348
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.86 E-value=42 Score=23.30 Aligned_cols=56 Identities=14% Similarity=0.115 Sum_probs=40.2
Q ss_pred HHHHHHhcCChhHHHHHhhcCCCCChhH--HHHHHHHHhccCChHHHHHHHHHhHhCC
Q 045555 22 IVSGYINRGQVDIARQYFAQMPERDYVL--WTAMIDGYLRVNRFREALTLFREMQTSN 77 (175)
Q Consensus 22 li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~ 77 (175)
|.+...+.|.+++|+..++...+++... ...--+.+...|+-++|..-|.+.+..+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 4445567788888888888777775443 4444566788888888888888888875
No 349
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=65.78 E-value=24 Score=27.34 Aligned_cols=59 Identities=14% Similarity=0.131 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhhcCCC---------C--ChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 17 ISWTTIVSGYINRGQVDIARQYFAQMPE---------R--DYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
.+.-.|++..+-.||+..|+++.+.+-- | .+.+|.-+.-+|...+++.+|++.|.+.+-
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888999999999999887641 1 556788888899999999999999998854
No 350
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=65.56 E-value=18 Score=19.03 Aligned_cols=31 Identities=16% Similarity=0.123 Sum_probs=14.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHH
Q 045555 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVG 167 (175)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 167 (175)
-++.+.|++++|.+..+.+++. .|+..-...
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~ 39 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLEI--EPDNRQAQS 39 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHH
Confidence 4455556666666665555542 444443333
No 351
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.08 E-value=79 Score=26.18 Aligned_cols=84 Identities=12% Similarity=0.199 Sum_probs=66.0
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccC
Q 045555 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFN 93 (175)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 93 (175)
.+..-|..|.++..+.+++..|.+.|...+. |..|+-.+...|+-+....+-....+.|.
T Consensus 664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----~~~LlLl~t~~g~~~~l~~la~~~~~~g~--------------- 723 (794)
T KOG0276|consen 664 NSEVKWRQLGDAALSAGELPLASECFLRARD-----LGSLLLLYTSSGNAEGLAVLASLAKKQGK--------------- 723 (794)
T ss_pred cchHHHHHHHHHHhhcccchhHHHHHHhhcc-----hhhhhhhhhhcCChhHHHHHHHHHHhhcc---------------
Confidence 4667799999999999999999999987654 66677777788887776666666666663
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 045555 94 NDIFVGIALIDMYCKCGDVEKAQRVFWKM 122 (175)
Q Consensus 94 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 122 (175)
.|...-+|...|+++++.+++..-
T Consensus 724 -----~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 -----NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred -----cchHHHHHHHcCCHHHHHHHHHhc
Confidence 145666888899999999888765
No 352
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=63.71 E-value=59 Score=24.24 Aligned_cols=63 Identities=14% Similarity=0.232 Sum_probs=46.6
Q ss_pred HHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 045555 52 AMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWK 121 (175)
Q Consensus 52 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 121 (175)
-+.+...+.+++++|+.++.+++..|+..+..+.+ .--.+..-+.+.|.+.|++..-.+....
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~n-------EqE~tvlel~~lyv~~g~~~~l~~~i~~ 70 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLN-------EQEATVLELFKLYVSKGDYCSLGDTITS 70 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhh-------HHHHHHHHHHHHHHhcCCcchHHHHHHh
Confidence 35566778899999999999999999888777763 2233445688888888887765554443
No 353
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.21 E-value=58 Score=23.67 Aligned_cols=75 Identities=12% Similarity=-0.001 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcC--------CC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCcHHHH
Q 045555 98 VGIALIDMYCKCGDVEKAQRVFWKMLR--------KD-KFTWTAMIVGLAISGHGDTALDMFSQMLRA---SIRLDEVTY 165 (175)
Q Consensus 98 ~~~~li~~~~~~~~~~~a~~~~~~~~~--------~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~t~ 165 (175)
.+..+-..+.+..++++|-..|.+-.. ++ ...|-..|-.+....++..|.+.+++--+. .-.-+..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 344555556666666666555554421 01 112444555556667888899888884332 122356666
Q ss_pred HHHHhhh
Q 045555 166 VGVLSAC 172 (175)
Q Consensus 166 ~~ll~~~ 172 (175)
.-||.+|
T Consensus 232 enLL~ay 238 (308)
T KOG1585|consen 232 ENLLTAY 238 (308)
T ss_pred HHHHHHh
Confidence 6677665
No 354
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=62.04 E-value=49 Score=22.76 Aligned_cols=53 Identities=11% Similarity=0.243 Sum_probs=36.7
Q ss_pred hHHHHHHHHHhHhCCCCCCh--HHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 63 FREALTLFREMQTSNIRRDE--FTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 63 ~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
++.|+.+++.+.+.-..|.. ..--.++ --..+-.|.+.|.+++|.++++....
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~li---------k~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLI---------KEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHH---------HHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 68899999998886544321 1111111 13567789999999999999999844
No 355
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=61.99 E-value=48 Score=22.66 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHCCCCCcHHHHHHHHhhhcC
Q 045555 144 DTALDMFSQMLRASIRLDEVTYVGVLSACTH 174 (175)
Q Consensus 144 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 174 (175)
++|.+.|++..+ ..|+..+|..-|..+.+
T Consensus 97 ~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 97 EKATEYFQKAVD--EDPNNELYRKSLEMAAK 125 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh--cCCCcHHHHHHHHHHHh
Confidence 333344443333 46777777776665543
No 356
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=61.89 E-value=69 Score=24.37 Aligned_cols=63 Identities=14% Similarity=0.265 Sum_probs=46.3
Q ss_pred HHHHHHHHhcCChhHHHHHhhcCC-------CCChhHHH--HHHHHHhccCChHHHHHHHHHhHh-----CCCCCCh
Q 045555 20 TTIVSGYINRGQVDIARQYFAQMP-------ERDYVLWT--AMIDGYLRVNRFREALTLFREMQT-----SNIRRDE 82 (175)
Q Consensus 20 ~~li~~~~~~~~~~~a~~~~~~m~-------~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~ 82 (175)
..++...-+.++.++|.++.+++. +|+.+.|. ...+.+...|+.+++.+.+++..+ .|+.|+.
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Confidence 344444456678999999999876 36777655 445567788999999999999988 5676643
No 357
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=61.32 E-value=36 Score=20.93 Aligned_cols=69 Identities=13% Similarity=0.099 Sum_probs=42.3
Q ss_pred HHHHHHHhcCCHH--HHHHHHHhh----cCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHh
Q 045555 101 ALIDMYCKCGDVE--KAQRVFWKM----LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLS 170 (175)
Q Consensus 101 ~li~~~~~~~~~~--~a~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 170 (175)
+--..|....+.| +..+-++.+ ..|++.+..+.+++|.|.+++..|.++|+-.+.+ +.+...+|..+++
T Consensus 13 ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 13 ARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 3334444444333 344444544 4588999999999999999999999999998875 2233336766664
No 358
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=61.09 E-value=58 Score=23.25 Aligned_cols=80 Identities=21% Similarity=0.232 Sum_probs=50.6
Q ss_pred HHHHHhhcCCCCCh--hHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCC
Q 045555 34 IARQYFAQMPERDY--VLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGD 111 (175)
Q Consensus 34 ~a~~~~~~m~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~ 111 (175)
.|.+.|......-. ...-.+..-|.+.|++++|.++|+.+...--... | ..+...+...+..++.+.|+
T Consensus 163 ~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~eg---W------~~l~~~~l~~l~~Ca~~~~~ 233 (247)
T PF11817_consen 163 KAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREG---W------WSLLTEVLWRLLECAKRLGD 233 (247)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC---c------HHHHHHHHHHHHHHHHHhCC
Confidence 45555555444322 2334566779999999999999999943211111 1 11233455678899999999
Q ss_pred HHHHHHHHHhh
Q 045555 112 VEKAQRVFWKM 122 (175)
Q Consensus 112 ~~~a~~~~~~~ 122 (175)
.++...+--++
T Consensus 234 ~~~~l~~~leL 244 (247)
T PF11817_consen 234 VEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHH
Confidence 99887765544
No 359
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.52 E-value=64 Score=23.87 Aligned_cols=120 Identities=14% Similarity=0.109 Sum_probs=0.0
Q ss_pred hcCChhHHHHHhhcCCCC-------ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHH
Q 045555 28 NRGQVDIARQYFAQMPER-------DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGI 100 (175)
Q Consensus 28 ~~~~~~~a~~~~~~m~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 100 (175)
+...+++|+.-|++..+. .-...-.+|....+.|++++....|.+|+. ...+.+|- +.+-...|
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT--YIkSAVTr-------NySEKsIN 109 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT--YIKSAVTR-------NYSEKSIN 109 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH--HHHHHHhc-------cccHHHHH
Q ss_pred HHHHHHHhcCCHHHHHHHHHhh---------cCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 101 ALIDMYCKCGDVEKAQRVFWKM---------LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 101 ~li~~~~~~~~~~~a~~~~~~~---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
++++--+...+.+...++++.- .+.=..|-..+-..|...|++.+..++++++...
T Consensus 110 ~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~S 174 (440)
T KOG1464|consen 110 SILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQS 174 (440)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHH
No 360
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=60.24 E-value=22 Score=27.81 Aligned_cols=56 Identities=18% Similarity=0.156 Sum_probs=43.5
Q ss_pred HHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 045555 55 DGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWK 121 (175)
Q Consensus 55 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 121 (175)
..+|+.|+...++.+|+..++-|- -|..|. ..+|.-|-.+|.-.+++++|.+....
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGT-eDl~tL----------SAIYsQLGNAyfyL~DY~kAl~yH~h 80 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGT-EDLSTL----------SAIYSQLGNAYFYLKDYEKALKYHTH 80 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcc-hHHHHH----------HHHHHHhcchhhhHhhHHHHHhhhhh
Confidence 458999999999999999999773 232233 34567888999999999999887653
No 361
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=59.18 E-value=31 Score=19.54 Aligned_cols=70 Identities=10% Similarity=0.137 Sum_probs=51.8
Q ss_pred Hhhcc-CCCcHHHHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCC
Q 045555 7 IFGNM-KNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 77 (175)
Q Consensus 7 ~~~~m-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 77 (175)
+++.+ ..+|...-...+..+++.++.+-...+.+.+..+|..+=...+.++.+.|+ +++...+.++.+..
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-~~~~~~L~~~l~~~ 74 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGELGDPEAIPALIELLKDEDPMVRRAAARALGRIGD-PEAIPALIKLLQDD 74 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-HHTHHHHHHHHTC-
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHcCC
Confidence 44555 457777777888888888877666666666777888888888888888875 56777777776653
No 362
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=58.89 E-value=95 Score=25.02 Aligned_cols=98 Identities=11% Similarity=0.068 Sum_probs=50.3
Q ss_pred HHHHHHHHHh-HhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhcCC
Q 045555 64 REALTLFREM-QTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGH 142 (175)
Q Consensus 64 ~~a~~~~~~m-~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~ 142 (175)
++....+.+. .+.|+..+......+......|......+++.+...+..-....+..-...+.......+++++ ..++
T Consensus 178 ~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~~~d 256 (504)
T PRK14963 178 EEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-AQGD 256 (504)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-HcCC
Confidence 3334444443 2345555555554444444444443333443333222111111111112223444455566666 4589
Q ss_pred hhHHHHHHHHHHHCCCCCcH
Q 045555 143 GDTALDMFSQMLRASIRLDE 162 (175)
Q Consensus 143 ~~~a~~~~~~m~~~g~~p~~ 162 (175)
..+|...++++...|..|..
T Consensus 257 ~~~Al~~l~~Ll~~G~~~~~ 276 (504)
T PRK14963 257 AAEALSGAAQLYRDGFAART 276 (504)
T ss_pred HHHHHHHHHHHHHcCCCHHH
Confidence 99999999999999977764
No 363
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=58.75 E-value=53 Score=22.08 Aligned_cols=93 Identities=17% Similarity=0.153 Sum_probs=59.5
Q ss_pred cCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHH
Q 045555 41 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120 (175)
Q Consensus 41 ~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 120 (175)
.-..++...+..++..+.+.|++ ..+.++.+.++-||...... .+++ -.+....+.++=-
T Consensus 23 ~~i~~~~~L~~lli~lLi~~~~~----~~L~qllq~~Vi~DSk~lA~-------------~LLs---~~~~~~~~~Ql~l 82 (167)
T PF07035_consen 23 HNIPVQHELYELLIDLLIRNGQF----SQLHQLLQYHVIPDSKPLAC-------------QLLS---LGNQYPPAYQLGL 82 (167)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHhhcccCCcHHHHH-------------HHHH---hHccChHHHHHHH
Confidence 33457777899999999999985 45667777777666544421 1211 1222333444444
Q ss_pred hhcCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 045555 121 KMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153 (175)
Q Consensus 121 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 153 (175)
+|.++=...+..+++.+...|++-+|.+..+..
T Consensus 83 DMLkRL~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 83 DMLKRLGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HHHHHhhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 443332335777788888899999999988875
No 364
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=57.64 E-value=41 Score=20.46 Aligned_cols=59 Identities=12% Similarity=0.031 Sum_probs=43.4
Q ss_pred CHHHHHHHHHhh----cCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHh
Q 045555 111 DVEKAQRVFWKM----LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLS 170 (175)
Q Consensus 111 ~~~~a~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 170 (175)
+.-++.+-++.+ ..|+..+..+-+++|.+-+++..|.++|+-.+.+ +..+..+|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 344455555554 4588899999999999999999999999988754 2225556766665
No 365
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=57.51 E-value=76 Score=23.49 Aligned_cols=107 Identities=8% Similarity=0.102 Sum_probs=73.5
Q ss_pred chHHHHhhccC--C---CcHHHHHHHHHHHHhcCC--hhHHHHHhhcCC-----CCChhHHHHHHHHHhccCChHHHHHH
Q 045555 2 GFALEIFGNMK--N---KDVISWTTIVSGYINRGQ--VDIARQYFAQMP-----ERDYVLWTAMIDGYLRVNRFREALTL 69 (175)
Q Consensus 2 ~~A~~~~~~m~--~---~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~-----~~~~~~~~~li~~~~~~~~~~~a~~~ 69 (175)
.+|+++|+... + .|..+...+++......+ ...-.++.+.+. .++..+--..|..+++.++|..-.++
T Consensus 145 v~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~f 224 (292)
T PF13929_consen 145 VEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQF 224 (292)
T ss_pred HHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHH
Confidence 36777777322 1 577777778877776222 122222222222 35677778899999999999999999
Q ss_pred HHHhHhC-CCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 045555 70 FREMQTS-NIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM 122 (175)
Q Consensus 70 ~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 122 (175)
++..... +. ..|...|...|+.-...|+..-...+.++=
T Consensus 225 W~~~~~~~~~--------------~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 225 WEQCIPNSVP--------------GNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred HHHhcccCCC--------------CCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 8887665 32 345666789999999999999888887763
No 366
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=57.28 E-value=98 Score=24.70 Aligned_cols=42 Identities=21% Similarity=0.188 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHHHHHh
Q 045555 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAI 139 (175)
Q Consensus 98 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 139 (175)
++.+++-...+.|+-.....+++.....+.+|-|.|-++|-|
T Consensus 545 VkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~nQMtkGf~R 586 (645)
T KOG0403|consen 545 VKKALVMVMEKKGDSTMILDLLKECFKSGLITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeHHHhhhhhhh
Confidence 344555555555554444444444444555555555555554
No 367
>PF13934 ELYS: Nuclear pore complex assembly
Probab=57.09 E-value=67 Score=22.70 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=10.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhh
Q 045555 102 LIDMYCKCGDVEKAQRVFWKM 122 (175)
Q Consensus 102 li~~~~~~~~~~~a~~~~~~~ 122 (175)
++.++.+.|+.+.|.++++.+
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhc
Confidence 444444445555555555444
No 368
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.88 E-value=84 Score=23.81 Aligned_cols=96 Identities=13% Similarity=0.125 Sum_probs=63.3
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHhHhCC---CCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 045555 46 DYVLWTAMIDGYLRVNRFREALTLFREMQTSN---IRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM 122 (175)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 122 (175)
...+-..++..-....+++.++..+-+++++. ..|+...+ +++..+- .=+.+++..+...=
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~---------------~~irlll-ky~pq~~i~~l~np 126 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH---------------TWIRLLL-KYDPQKAIYTLVNP 126 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH---------------HHHHHHH-ccChHHHHHHHhCc
Confidence 33444555555566677888888888887653 22333232 2333322 33455665555543
Q ss_pred cC----CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 045555 123 LR----KDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157 (175)
Q Consensus 123 ~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 157 (175)
+. ||-.+++.+|+.+.+.+++.+|.++.-.|..+.
T Consensus 127 IqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 127 IQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred chhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22 588999999999999999999999988887654
No 369
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=56.80 E-value=75 Score=24.27 Aligned_cols=48 Identities=8% Similarity=0.103 Sum_probs=24.1
Q ss_pred HhcCCHHHHHHHHHhhcCC-C----hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 045555 107 CKCGDVEKAQRVFWKMLRK-D----KFTWTAMIVGLAISGHGDTALDMFSQML 154 (175)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (175)
.+.|+..+|.+.|.++.+. . ..+-..++.++....-+.+.-.++.+..
T Consensus 286 RklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 286 RKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred HHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566666666666665331 1 1123345666655555555444444433
No 370
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=55.97 E-value=41 Score=19.93 Aligned_cols=41 Identities=12% Similarity=0.221 Sum_probs=32.8
Q ss_pred HhcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhcCChhHHHH
Q 045555 107 CKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALD 148 (175)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 148 (175)
...|+.+.|.++.+.+. +...-|..++.++-..|.-+-|.+
T Consensus 47 ~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 47 ENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELARE 87 (88)
T ss_pred cccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhhc
Confidence 45688899999999888 888888889988888877665543
No 371
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=55.23 E-value=79 Score=22.98 Aligned_cols=56 Identities=11% Similarity=-0.033 Sum_probs=41.8
Q ss_pred HHHHHhcCCHHHHHHHHHhh-----cCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 045555 103 IDMYCKCGDVEKAQRVFWKM-----LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158 (175)
Q Consensus 103 i~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 158 (175)
-..|....++-..-.++.+| ..|+.......|++|.+..+-..|.+.++.-+-.++
T Consensus 203 ~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~clPd~L 263 (293)
T KOG3036|consen 203 YYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRSCLPDQL 263 (293)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHhhCcchh
Confidence 34555666677777777777 347889999999999999888888888876544333
No 372
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=55.23 E-value=29 Score=20.28 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=20.2
Q ss_pred ChhhHH-HHHHHHHhcCChhHHHHHHHHHHHCC
Q 045555 126 DKFTWT-AMIVGLAISGHGDTALDMFSQMLRAS 157 (175)
Q Consensus 126 ~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~g 157 (175)
+..-|| ++++.+.++.--++|+++++-|.++|
T Consensus 29 ~~~gy~PtV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 29 DFSGYNPTVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred CcCCCCchHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 344444 35566666677777777777777665
No 373
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=54.65 E-value=29 Score=17.97 Aligned_cols=28 Identities=11% Similarity=0.208 Sum_probs=21.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCcH
Q 045555 135 VGLAISGHGDTALDMFSQMLRASIRLDE 162 (175)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 162 (175)
+-+...|--.++.++.-++.+.|+.|..
T Consensus 12 S~lLntgLd~etL~ici~L~e~GVnPea 39 (48)
T PF12554_consen 12 SDLLNTGLDRETLSICIELCENGVNPEA 39 (48)
T ss_pred HHHHcCCCCHHHHHHHHHHHHCCCCHHH
Confidence 4455667778889999999999988864
No 374
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=54.42 E-value=47 Score=20.13 Aligned_cols=60 Identities=13% Similarity=0.163 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCChhHHHHHhhcCCCCCh--hHHHHHHHHHhcc--CChHHHHHHHHHhHhCCC
Q 045555 19 WTTIVSGYINRGQVDIARQYFAQMPERDY--VLWTAMIDGYLRV--NRFREALTLFREMQTSNI 78 (175)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~ 78 (175)
...++.-|...|+.++|...+.++..|+. ..-..++..+... ..-+-+..++..+.+.+.
T Consensus 5 i~~~l~ey~~~~d~~ea~~~l~el~~~~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 5 IFSILMEYFSSGDVDEAVECLKELKLPSQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHTT-GGGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 34566677788999999999999876621 1223334333333 234555667777776664
No 375
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=54.21 E-value=71 Score=22.18 Aligned_cols=58 Identities=22% Similarity=0.304 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhhcC-C--Ch-hhHHHHHHHHHhcCChhHHHHHHHHHH
Q 045555 97 FVGIALIDMYCKCGDVEKAQRVFWKMLR-K--DK-FTWTAMIVGLAISGHGDTALDMFSQML 154 (175)
Q Consensus 97 ~~~~~li~~~~~~~~~~~a~~~~~~~~~-~--~~-~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (175)
...+.++..+...|+++.|.+.|.-+.+ | |+ ..|..=+..+.+.+.-....+.++.|.
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~ 103 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLI 103 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHH
Confidence 3457899999999999999999999854 2 22 257777888888777666656666663
No 376
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=54.05 E-value=45 Score=21.19 Aligned_cols=39 Identities=13% Similarity=0.228 Sum_probs=26.2
Q ss_pred hHHHHHhhcCCCCChhH-----HHHHHHHHhccCChHHHHHHHH
Q 045555 33 DIARQYFAQMPERDYVL-----WTAMIDGYLRVNRFREALTLFR 71 (175)
Q Consensus 33 ~~a~~~~~~m~~~~~~~-----~~~li~~~~~~~~~~~a~~~~~ 71 (175)
++..++|..|.+..+.+ |......+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34667777777654433 5555556677788888888875
No 377
>PF14162 YozD: YozD-like protein
Probab=53.81 E-value=32 Score=18.00 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHCCCCCcH--------HHHHHHHhhh
Q 045555 145 TALDMFSQMLRASIRLDE--------VTYVGVLSAC 172 (175)
Q Consensus 145 ~a~~~~~~m~~~g~~p~~--------~t~~~ll~~~ 172 (175)
-|.-.|.++.++|+-|+. .||-.|+.-|
T Consensus 13 IAefFy~eL~kRGyvP~e~El~eiADItFeYll~K~ 48 (57)
T PF14162_consen 13 IAEFFYHELVKRGYVPTEEELEEIADITFEYLLEKC 48 (57)
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 355668999999999974 5666666655
No 378
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.47 E-value=1.5e+02 Score=25.70 Aligned_cols=24 Identities=8% Similarity=0.120 Sum_probs=18.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHH
Q 045555 129 TWTAMIVGLAISGHGDTALDMFSQ 152 (175)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~ 152 (175)
.|..++.-+++.|.+++|.+++..
T Consensus 532 d~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 532 DYEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467777888888888888887755
No 379
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=53.34 E-value=47 Score=20.28 Aligned_cols=32 Identities=16% Similarity=0.104 Sum_probs=15.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCcHHHH
Q 045555 134 IVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165 (175)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 165 (175)
+..+...+..-.|.++++++.+++..++..|.
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TV 38 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATV 38 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHH
Confidence 34444444445555555555555444444443
No 380
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=53.27 E-value=1.2e+02 Score=24.32 Aligned_cols=59 Identities=15% Similarity=0.255 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 045555 99 GIALIDMYCKCGDVEKAQRVFWKMLRK---DKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157 (175)
Q Consensus 99 ~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 157 (175)
...|++-|...|++.+|.++.+++-.| ...++.+++.+.-+.|+-...++++++.-..|
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 346889999999999999999999777 45688999999999998877888887776655
No 381
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=52.98 E-value=40 Score=18.91 Aligned_cols=32 Identities=9% Similarity=0.226 Sum_probs=21.9
Q ss_pred hcCChhHHHHHHHHHHHCCCCCcHHHHHHHHh
Q 045555 139 ISGHGDTALDMFSQMLRASIRLDEVTYVGVLS 170 (175)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 170 (175)
..|+.+++.+++++....|..|.......+..
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p 44 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMP 44 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 46778888888888887777777665554443
No 382
>PF01335 DED: Death effector domain; InterPro: IPR001875 The death effector domain (DED) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DED is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. The dimerisation of DED domains is mediated primarily by electrostatic interactions. DED domains can be found in isolation, or in combination with other domains. Domains associated with DED include: caspase catalytic domains (in caspase-8, -10), death domains (in FADD), nuclear localisation sequences (in DEDD), transmembrane domains (in Bap31 and Bar), nucleotide-binding domains (in Dap3), coiled-coil domains (in Hip and Hippi), SAM domains (in Bar), and E2-binding RING domains (in Bar) []. Several DED-containing proteins are involved in the regulation of apoptosis through their interactions with DED-containing caspases (IPR002398 from INTERPRO), such as caspases 8 and 10 in humans, both of which contain tandem pairs of DEDs. There are many DED-containing modulators of apoptosis, which can either enhance or inhibit caspase activation [].; GO: 0005515 protein binding, 0042981 regulation of apoptosis; PDB: 3CL3_A 2F1S_A 2BBZ_C 2BBR_A 1A1Z_A 2GF5_A 1A1W_A 1N3K_A.
Probab=52.69 E-value=44 Score=19.27 Aligned_cols=41 Identities=20% Similarity=0.384 Sum_probs=31.0
Q ss_pred HHHHHHHHHhHhCC-CCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHH
Q 045555 64 REALTLFREMQTSN-IRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120 (175)
Q Consensus 64 ~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 120 (175)
..+.++|..|.+.| +.|+-..+ |.+.+...|+.+-+..+.+
T Consensus 37 ~~~~dlf~~Le~~~~i~~~nl~~----------------L~~lL~~i~R~DL~~~i~~ 78 (84)
T PF01335_consen 37 KSGLDLFEELEKRGLISPDNLSL----------------LKELLKRIGRPDLLKKIEE 78 (84)
T ss_dssp SSHHHHHHHHHHTTSSSTTBHHH----------------HHHHHHHTT-HHHHHHHHH
T ss_pred chHHHHHHHHHHcCCCCCccHHH----------------HHHHHHHhCHHHHHHHHHH
Confidence 35889999999988 45555544 8888888899988887765
No 383
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=52.02 E-value=90 Score=22.68 Aligned_cols=121 Identities=12% Similarity=0.167 Sum_probs=72.1
Q ss_pred HhcCChhHHHHHhhcCCC------CCh------hHHHHHHHHHhccCChHHHHHHHHHhHhC----C----CCCChHHHH
Q 045555 27 INRGQVDIARQYFAQMPE------RDY------VLWTAMIDGYLRVNRFREALTLFREMQTS----N----IRRDEFTTV 86 (175)
Q Consensus 27 ~~~~~~~~a~~~~~~m~~------~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~----~~p~~~~~~ 86 (175)
.+.|+.+.|..++.+... |+. ..|+.=...+.+..++++|...+++..+. + ..|+...
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e-- 81 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE-- 81 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH--
Confidence 578999999999998764 221 23444444444433888887777766543 1 1222211
Q ss_pred HhhhccCcchhHHHHHHHHHHhcCCHHHH---HHHHHhhcC--CC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 87 RILTTFNNDIFVGIALIDMYCKCGDVEKA---QRVFWKMLR--KD-KFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 87 ~l~~~~~~~~~~~~~li~~~~~~~~~~~a---~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
.-..+...++.+|...+..+.. .++.+.+.. |+ +.++-.-++.+.+.++.+.+.+.+.+|...
T Consensus 82 -------lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 82 -------LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred -------HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 1123445778888777775544 444444422 33 455556666776678888888888888875
No 384
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=51.84 E-value=12 Score=29.97 Aligned_cols=69 Identities=14% Similarity=0.103 Sum_probs=37.1
Q ss_pred HHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--CChhh------HHHHHHHHHhc
Q 045555 69 LFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--KDKFT------WTAMIVGLAIS 140 (175)
Q Consensus 69 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~------~~~li~~~~~~ 140 (175)
+++++-..|+.|+..||+ ...+..+++.|.+. .++=.. .|+.+ -..-+..-+|.
T Consensus 255 IleDl~~LgIkpd~~TyT---------SDyF~~i~dycv~l---------ikeGKAYvDDTp~E~Mr~ER~~gv~Sk~R~ 316 (712)
T KOG1147|consen 255 ILEDLSLLGIKPDRVTYT---------SDYFDEIMDYCVKL---------IKEGKAYVDDTPTEQMRDEREQGVESKCRS 316 (712)
T ss_pred HHHHHHHhCcCcceeeec---------hhhHHHHHHHHHHH---------HhcCcccccCCcHHHHHHHHhccccccccC
Confidence 566667778999999883 33444555554421 111100 01110 11123445567
Q ss_pred CChhHHHHHHHHHHH
Q 045555 141 GHGDTALDMFSQMLR 155 (175)
Q Consensus 141 g~~~~a~~~~~~m~~ 155 (175)
...++-++++++|..
T Consensus 317 ~~vEenl~iw~EM~k 331 (712)
T KOG1147|consen 317 NSVEENLRIWEEMKK 331 (712)
T ss_pred CCHHHHHHHHHHHhc
Confidence 777777788877764
No 385
>TIGR01914 cas_Csa4 CRISPR-associated protein, Csa4 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein that tends to be found near CRISPR repeats. The species range for this species, so far, is exclusively archaeal. It is found so far in only four different species, and includes two tandem genes in Pyrococcus furiosus DSM 3638. This subfamily is found in a CRISPR/Cas locus we designate APERN, so the family is designated Csa4, for CRISPR/Cas Subtype Protein 4.
Probab=51.81 E-value=1e+02 Score=23.33 Aligned_cols=67 Identities=12% Similarity=0.125 Sum_probs=50.1
Q ss_pred HHhcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhhhc
Q 045555 106 YCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173 (175)
Q Consensus 106 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 173 (175)
+.|..++-...++++.+.+.+...-.+++++... |+-+.-...++++...|+.+++.....|....+
T Consensus 286 ~lK~r~~y~~~kfvd~L~r~d~e~~~~L~~ai~~-~~~~~~Ysa~R~~k~~g~~~~~~~v~~lae~l~ 352 (354)
T TIGR01914 286 YLKARDFYSWPKFVDFLARRDPEISLQLTDAILN-GDEEAFYTALRELKKSGVRYDPEQVDALAEILA 352 (354)
T ss_pred HHhhhhhcchHHHHHHHhccChHHHHHHHHHHHc-CChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Confidence 4455455557777777777777777888887764 566667788888999999999988888877654
No 386
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=51.70 E-value=38 Score=19.91 Aligned_cols=60 Identities=13% Similarity=0.083 Sum_probs=38.7
Q ss_pred HhhccCCCcHHHHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHH
Q 045555 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66 (175)
Q Consensus 7 ~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a 66 (175)
+++.+.+.+..+-.-.=..-.+....++|..+.+.+..+...+|....+++-..|..+-|
T Consensus 19 ild~L~~~gvlt~~~~e~I~~~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~~~~La 78 (86)
T cd08323 19 IMDHMISDGVLTLDEEEKVKSKATQKEKAVMLINMILTKDNHAYVSFYNALLHEGYKDLA 78 (86)
T ss_pred HHHHHHhcCCCCHHHHHHHHcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCChHHH
Confidence 344444433333333333344667788888888888888888888888888776654444
No 387
>PF13934 ELYS: Nuclear pore complex assembly
Probab=51.60 E-value=84 Score=22.20 Aligned_cols=124 Identities=10% Similarity=0.074 Sum_probs=71.5
Q ss_pred HHHHHHHHHHh--cCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcc
Q 045555 18 SWTTIVSGYIN--RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNND 95 (175)
Q Consensus 18 ~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 95 (175)
.|...+.++.- .+++++|.+.+-.-.-+... -..++.++...|+.+.|.++++-..-....+
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~ps~~~~~-~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~--------------- 141 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHPSLIPWF-PDKILQALLRRGDPKLALRYLRAVGPPLSSP--------------- 141 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCCCCCccc-HHHHHHHHHHCCChhHHHHHHHhcCCCCCCH---------------
Confidence 35556666553 45666666666333221111 2357778888888888888877654322111
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhhcCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcH
Q 045555 96 IFVGIALIDMYCKCGDVEKAQRVFWKMLRKD-KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162 (175)
Q Consensus 96 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 162 (175)
...+..+.. ..++.+.+|..+-+...++. ...+..++..+..... + .+.++++.+--+.+..
T Consensus 142 -~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~~--~-~~~~~~Ll~LPl~~~E 204 (226)
T PF13934_consen 142 -EALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEECA--R-SGRLDELLSLPLDEEE 204 (226)
T ss_pred -HHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHhh--h-hhHHHHHHhCCCChHH
Confidence 112234444 56799999999888876642 4577888877775443 1 2235555554444443
No 388
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=51.35 E-value=1.1e+02 Score=23.43 Aligned_cols=109 Identities=19% Similarity=0.206 Sum_probs=72.6
Q ss_pred CChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhh-----------c-----C
Q 045555 61 NRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM-----------L-----R 124 (175)
Q Consensus 61 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~-----------~-----~ 124 (175)
..+.++...|......+ |+.....+++..+.-+.+.-.+-..+...|+.+.|.++.+.. . .
T Consensus 8 ~~Y~~~q~~F~~~v~~~---Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~ 84 (360)
T PF04910_consen 8 KAYQEAQEQFYAAVQSH---DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSN 84 (360)
T ss_pred HHHHHHHHHHHHHHHcc---CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 44666777777777654 555555666666777778888888888999988888777775 1 1
Q ss_pred C-------------ChhhHHH---HHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhhh
Q 045555 125 K-------------DKFTWTA---MIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172 (175)
Q Consensus 125 ~-------------~~~~~~~---li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 172 (175)
+ |-..|-+ .|..+.+.|-+..|.++.+-+..-...-|+.-...+|+.|
T Consensus 85 ~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ 148 (360)
T PF04910_consen 85 LTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYY 148 (360)
T ss_pred cccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHH
Confidence 1 2233433 4567888888999999888888654443444444444443
No 389
>smart00031 DED Death effector domain.
Probab=51.26 E-value=46 Score=19.06 Aligned_cols=60 Identities=12% Similarity=0.338 Sum_probs=36.9
Q ss_pred CCChhHHHHHHHHHhccCC--hHHHHHHHHHhHhCC-CCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHH
Q 045555 44 ERDYVLWTAMIDGYLRVNR--FREALTLFREMQTSN-IRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119 (175)
Q Consensus 44 ~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 119 (175)
+.+....--+.....-.+. ...+.++|.++.+.| +.|+-..+ +.+.+..-++.+.+..++
T Consensus 16 ~~dl~~lkFLc~~~ip~~~le~~~~ldlf~~Le~~~~l~~~nl~~----------------L~elL~~i~R~DLl~~i~ 78 (79)
T smart00031 16 SEELEVLLFLCKDLIPKRKLEIKTFLDLFSALEEQGLLSEDNLSL----------------LAELLYRLRRLDLLRRLF 78 (79)
T ss_pred HHHHHHHHHHhHhhcchhhcccCCHHHHHHHHHHcCCCCCccHHH----------------HHHHHHHcCHHHHHHHhc
Confidence 3344444444443332222 578899999999987 44554444 777777788777776554
No 390
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=51.26 E-value=95 Score=22.76 Aligned_cols=80 Identities=8% Similarity=-0.017 Sum_probs=50.8
Q ss_pred hHHHHhhccCC--------CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC-CChhHHHHHHHHHhccCChHHHHHHHHHh
Q 045555 3 FALEIFGNMKN--------KDVISWTTIVSGYINRGQVDIARQYFAQMPE-RDYVLWTAMIDGYLRVNRFREALTLFREM 73 (175)
Q Consensus 3 ~A~~~~~~m~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m 73 (175)
+|.+.|+.... .++..-..++....+.|+.+....+++.... ++......++.+++...+.+...++++..
T Consensus 148 ~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~ 227 (324)
T PF11838_consen 148 EARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDLL 227 (324)
T ss_dssp HHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHHH
Confidence 45556654432 1445556667777778887776666666664 46666788899999898888888888888
Q ss_pred HhCC-CCCCh
Q 045555 74 QTSN-IRRDE 82 (175)
Q Consensus 74 ~~~~-~~p~~ 82 (175)
...+ +.+..
T Consensus 228 l~~~~v~~~d 237 (324)
T PF11838_consen 228 LSNDKVRSQD 237 (324)
T ss_dssp HCTSTS-TTT
T ss_pred cCCcccccHH
Confidence 8865 55444
No 391
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=51.11 E-value=62 Score=20.57 Aligned_cols=45 Identities=18% Similarity=0.130 Sum_probs=35.2
Q ss_pred HHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 045555 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWK 121 (175)
Q Consensus 64 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 121 (175)
++..++|..|.+.||.-....+ |......+...|++.+|.++|+.
T Consensus 80 ~dp~~if~~L~~~~IG~~~Alf-------------Ye~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALF-------------YEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHH-------------HHHHHHHHHHcCCHHHHHHHHHc
Confidence 4467899999999985544333 67778888999999999999863
No 392
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=50.78 E-value=1e+02 Score=22.89 Aligned_cols=91 Identities=12% Similarity=0.096 Sum_probs=55.7
Q ss_pred HHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhc----C-C--HHHHHHHHHhhcCCChhhHHHHHHHHHhcC
Q 045555 69 LFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKC----G-D--VEKAQRVFWKMLRKDKFTWTAMIVGLAISG 141 (175)
Q Consensus 69 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~----~-~--~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 141 (175)
+-+.+.+.|+..+......++..+..|......-++-++-- + . .++...+.. ..+..+|. ++++.. .|
T Consensus 139 i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~---~~~~~if~-l~dai~-~~ 213 (326)
T PRK07452 139 VERTAQELGVKLTPEAAELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKALVS---NTTQNSLQ-LADALL-QG 213 (326)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhc---cCcCcHHH-HHHHHH-CC
Confidence 44555667777777777777776666654433333333221 1 1 233333332 22345665 777776 48
Q ss_pred ChhHHHHHHHHHHHCCCCCcHHH
Q 045555 142 HGDTALDMFSQMLRASIRLDEVT 164 (175)
Q Consensus 142 ~~~~a~~~~~~m~~~g~~p~~~t 164 (175)
+..+|.++++++...|..|-...
T Consensus 214 ~~~~A~~~l~~L~~~g~~p~~il 236 (326)
T PRK07452 214 NTGKALALLDDLLDANEPALRIV 236 (326)
T ss_pred CHHHHHHHHHHHHHCCCcHHHHH
Confidence 99999999999999998875443
No 393
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.59 E-value=94 Score=22.50 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=18.5
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCc
Q 045555 137 LAISGHGDTALDMFSQMLRASIRLD 161 (175)
Q Consensus 137 ~~~~g~~~~a~~~~~~m~~~g~~p~ 161 (175)
-+..+++.+|.++|++.....+..+
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccch
Confidence 3467889999999999876654444
No 394
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=50.51 E-value=80 Score=21.65 Aligned_cols=42 Identities=17% Similarity=0.172 Sum_probs=26.0
Q ss_pred HHHHHHHHHhh--cCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 045555 112 VEKAQRVFWKM--LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159 (175)
Q Consensus 112 ~~~a~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 159 (175)
+++|...|+.. .+|+...|+.-+.... +|-++..++.+++..
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSLEMAA------KAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHH------THHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHH------hhHHHHHHHHHHHhh
Confidence 33444444444 5689999998887763 578888888776543
No 395
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.39 E-value=1.2e+02 Score=25.87 Aligned_cols=77 Identities=22% Similarity=0.204 Sum_probs=48.3
Q ss_pred HHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHH
Q 045555 54 IDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133 (175)
Q Consensus 54 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 133 (175)
|+-+.+.+.+++|++..+..... .|... -..++...|+.+...|++++|-...-.|...+..-|..-
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~-----------i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~ 429 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFV-----------IKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELW 429 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccc-----------hHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHH
Confidence 45567888889998877665442 22110 123445788888889999998888888755555555554
Q ss_pred HHHHHhcCCh
Q 045555 134 IVGLAISGHG 143 (175)
Q Consensus 134 i~~~~~~g~~ 143 (175)
+.-+...|+.
T Consensus 430 V~~f~e~~~l 439 (846)
T KOG2066|consen 430 VFKFAELDQL 439 (846)
T ss_pred HHHhcccccc
Confidence 4444444443
No 396
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=50.17 E-value=67 Score=20.70 Aligned_cols=32 Identities=16% Similarity=0.024 Sum_probs=25.1
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 93 NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 93 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
.|+..+....+.++.+.+|+..|.++|+..+.
T Consensus 81 VP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 81 VPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred CCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44455557888899999999999999988754
No 397
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=50.05 E-value=1.4e+02 Score=24.36 Aligned_cols=136 Identities=8% Similarity=0.076 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhcCCC--CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhh----c
Q 045555 18 SWTTIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT----T 91 (175)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~----~ 91 (175)
..-+++..+++...+.....+..+|.+ .+-..|..++.+|.+. ..+.-..+++++.+..+. ......-+. .
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn--Dvv~~ReLa~~yEk 144 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN--DVVIGRELADKYEK 144 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch--hHHHHHHHHHHHHH
Confidence 344566666666666666666666653 4666788888888877 555666666666654321 111100000 0
Q ss_pred --cCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C---------------------ChhhHHHHHHHHHhcCChhHH
Q 045555 92 --FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K---------------------DKFTWTAMIVGLAISGHGDTA 146 (175)
Q Consensus 92 --~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~---------------------~~~~~~~li~~~~~~g~~~~a 146 (175)
-......|.-++..+.-.++...-.++|.++++ + ..+.+.-+-.-|....++.+|
T Consensus 145 ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~ea 224 (711)
T COG1747 145 IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEA 224 (711)
T ss_pred hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHH
Confidence 011122233333333333333333444444432 1 223455555677778888888
Q ss_pred HHHHHHHHHC
Q 045555 147 LDMFSQMLRA 156 (175)
Q Consensus 147 ~~~~~~m~~~ 156 (175)
.+++.-+++.
T Consensus 225 i~Ilk~il~~ 234 (711)
T COG1747 225 IRILKHILEH 234 (711)
T ss_pred HHHHHHHhhh
Confidence 8888877654
No 398
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=49.98 E-value=53 Score=21.44 Aligned_cols=43 Identities=9% Similarity=0.142 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhh
Q 045555 128 FTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171 (175)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 171 (175)
-|...++.+. ..|-..+...++++|.++|+..+..++..++.-
T Consensus 111 GtlGvL~~ak-~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~ 153 (157)
T COG2405 111 GTLGVLALAK-SKGLISKDKPILDELIEKGFRISRSILEEILRK 153 (157)
T ss_pred ehhHHHHHHH-HcCcccchHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 3555555555 468899999999999999999999999887753
No 399
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=49.46 E-value=88 Score=25.52 Aligned_cols=99 Identities=7% Similarity=0.030 Sum_probs=47.5
Q ss_pred ccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCc-chhHHHHHHHHHHhcCCHHHHHHHHHhhcCC--ChhhHHHHHH
Q 045555 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN-DIFVGIALIDMYCKCGDVEKAQRVFWKMLRK--DKFTWTAMIV 135 (175)
Q Consensus 59 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~ 135 (175)
..+-|+-|+.++......| ......++..++. +...-.-++..|.+.|..+.|.++.+.+-.. ...-|..-+.
T Consensus 371 ~~~lW~vai~yL~~c~~~g----~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~~~~~g~AL~ 446 (566)
T PF07575_consen 371 HHSLWQVAIGYLSSCPDEG----RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLKEGRYGEALS 446 (566)
T ss_dssp -TTTHHHHHHHHHS-SSS-----HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHCChhh----HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 4456888888887655554 4444444444333 3344567889999999999999999988432 3345777788
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCc
Q 045555 136 GLAISGHGDTALDMFSQMLRASIRLD 161 (175)
Q Consensus 136 ~~~~~g~~~~a~~~~~~m~~~g~~p~ 161 (175)
.+.++|+......+...+.+.....+
T Consensus 447 ~~~ra~d~~~v~~i~~~ll~~~~~~~ 472 (566)
T PF07575_consen 447 WFIRAGDYSLVTRIADRLLEEYCNNG 472 (566)
T ss_dssp HHH-----------------------
T ss_pred HHHHCCCHHHHHHHHHHHHHHHhcCC
Confidence 88899998888777777765444333
No 400
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=48.46 E-value=29 Score=20.75 Aligned_cols=62 Identities=11% Similarity=-0.065 Sum_probs=35.3
Q ss_pred HhhccCCCcHHHHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHH
Q 045555 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 69 (175)
Q Consensus 7 ~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~ 69 (175)
+++.+.+.+..+-.-.=..-+..-..++|..+++.........+..+++++. ..+..-+..+
T Consensus 28 ilD~Ll~~~Vlt~ee~e~I~~~~t~~~qAr~Lld~l~~KG~~A~~~F~~~L~-e~~~~L~~~L 89 (94)
T cd08329 28 ILDSLLSANVITEQEYDVIKQKTQTPLQARELIDTVLVKGNAAAEVFRNCLK-KNDPVLYRDL 89 (94)
T ss_pred HHHHHHHcCCCCHHHHHHHHcCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH-hcCHhHHHHH
Confidence 4444444333332222223334444688888888888888888888888774 3344333333
No 401
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=47.39 E-value=47 Score=18.09 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=31.8
Q ss_pred HHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHH
Q 045555 56 GYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119 (175)
Q Consensus 56 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 119 (175)
.+...|++-+|.++++++-.....|....+-.+|. .+..-...+.|+...|.+++
T Consensus 8 ~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq---------~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 8 ELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQ---------LAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHH---------HHHHHHHHHCTSHHHHHHHH
T ss_pred HHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHH---------HHHHHHHHHhCCHHHHHHhC
Confidence 35568999999999999987543333333322221 11112225778888887764
No 402
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=47.16 E-value=55 Score=18.84 Aligned_cols=25 Identities=16% Similarity=0.468 Sum_probs=14.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhcCC
Q 045555 100 IALIDMYCKCGDVEKAQRVFWKMLRK 125 (175)
Q Consensus 100 ~~li~~~~~~~~~~~a~~~~~~~~~~ 125 (175)
..+++.+.. ++++++.....++...
T Consensus 9 ~~i~~~~~~-~~~~~~~~~~~~l~~~ 33 (89)
T PF08542_consen 9 EEILESCLN-GDFKEARKKLYELLVE 33 (89)
T ss_dssp HHHHHHHHH-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHh-CCHHHHHHHHHHHHHc
Confidence 344444443 4777776666666544
No 403
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=47.00 E-value=1.3e+02 Score=22.93 Aligned_cols=68 Identities=15% Similarity=0.188 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCChhH---HHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHH
Q 045555 19 WTTIVSGYINRGQVDI---ARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTV 86 (175)
Q Consensus 19 ~~~li~~~~~~~~~~~---a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 86 (175)
-..++..+.+.++... |..+++.... | |...--.++..|...|..+.|...|..+.-..++-|...|.
T Consensus 183 ~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~ 256 (365)
T PF09797_consen 183 AHSLLDLYSKTKDSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHL 256 (365)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHH
Confidence 3344444444444433 4444444332 3 34444456777788888888888888876666666666554
No 404
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.74 E-value=1.5e+02 Score=23.86 Aligned_cols=31 Identities=10% Similarity=0.043 Sum_probs=24.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHhCCCCCC
Q 045555 50 WTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81 (175)
Q Consensus 50 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 81 (175)
...+++++ ..++.++|+.+++++...|..|.
T Consensus 245 if~Li~al-~~~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 245 LRGIAAAL-AQGDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 44556555 55899999999999999986654
No 405
>cd08336 DED_FADD Death Effector Domain found in Fas-Associated via Death Domain. Death Effector Domain (DED) found in Fas-Associated via Death Domain (FADD). DEDs comprise a subfamily of the Death Domain (DD) superfamily. FADD is a component of the death-inducing signaling complex (DISC) and serves as an adaptor in the signaling pathway of death receptor proteins. It modulates apoptosis as well as non-apoptotic processes such as cell cycle progression, survival, innate immune signaling, and hematopoiesis. FADD contains an N-terminal DED and a C-terminal DD. Its DD interacts with the DD of the activated death receptor and its DED recruits the initiator caspases 8 and 10 to the DISC complex via a homotypic interaction with the N-terminal DED of the caspase. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily incl
Probab=46.50 E-value=58 Score=18.87 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=27.9
Q ss_pred ChHHHHHHHHHhHhCC-CCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHH
Q 045555 62 RFREALTLFREMQTSN-IRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQR 117 (175)
Q Consensus 62 ~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 117 (175)
....+.++|..|.+.+ +.|+-..+ |.+.+..-|+.+.+..
T Consensus 37 ~~~s~l~lf~~Le~~~~i~~~nl~~----------------L~~lL~~i~R~DL~~~ 77 (82)
T cd08336 37 KVQSGLQLFSALMERNLISPENTAF----------------LRELLQSIKRDDLIQK 77 (82)
T ss_pred ccCCHHHHHHHHHHcCCCCcchHHH----------------HHHHHHHcCHHHHHHH
Confidence 4667899999999988 45554444 6666777777666644
No 406
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=45.88 E-value=67 Score=19.47 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=15.8
Q ss_pred HHHHHHHHhcCChhHHHHHhhcCCCC
Q 045555 20 TTIVSGYINRGQVDIARQYFAQMPER 45 (175)
Q Consensus 20 ~~li~~~~~~~~~~~a~~~~~~m~~~ 45 (175)
..++.-|...+++++|.+.+.++..|
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~ 31 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLP 31 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCC
Confidence 34555566666666666666666544
No 407
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=45.67 E-value=62 Score=25.69 Aligned_cols=98 Identities=13% Similarity=0.045 Sum_probs=61.3
Q ss_pred HHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHH
Q 045555 54 IDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAM 133 (175)
Q Consensus 54 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 133 (175)
.+.+.+.+.++.|+.++.+..+. .|+.+.| |..=-.++.+.+++..|.+=+...++-+ -..
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~-------------~anRa~a~lK~e~~~~Al~Da~kaie~d----P~~ 71 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIY-------------FANRALAHLKVESFGGALHDALKAIELD----PTY 71 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceee-------------echhhhhheeechhhhHHHHHHhhhhcC----chh
Confidence 34566778899999999999883 4443333 2223367788888888887777776655 223
Q ss_pred HHHHHh-------cCChhHHHHHHHHHHHCCCCCcHHHHHHHHhhh
Q 045555 134 IVGLAI-------SGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172 (175)
Q Consensus 134 i~~~~~-------~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 172 (175)
+++|.+ .+++.+|+..|+... .+.|+..-+.-.+.-|
T Consensus 72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~--~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 72 IKAYVRRGTAVMALGEFKKALLDLEKVK--KLAPNDPDATRKIDEC 115 (476)
T ss_pred hheeeeccHHHHhHHHHHHHHHHHHHhh--hcCcCcHHHHHHHHHH
Confidence 344444 445555555555443 4678777666666554
No 408
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=45.57 E-value=1.6e+02 Score=23.83 Aligned_cols=55 Identities=18% Similarity=0.092 Sum_probs=39.1
Q ss_pred HHHHhcCCHHHHHHHHHhhc---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 045555 104 DMYCKCGDVEKAQRVFWKML---RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158 (175)
Q Consensus 104 ~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 158 (175)
..+...|+++.+.+.+.... ..+..+-.++++...+.|++++|..+-.-|+...+
T Consensus 331 ~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ei 388 (831)
T PRK15180 331 VIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEI 388 (831)
T ss_pred HHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcccc
Confidence 34566788888887777663 34566777788888888888888888777765433
No 409
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=45.57 E-value=1.7e+02 Score=24.10 Aligned_cols=64 Identities=17% Similarity=0.095 Sum_probs=40.9
Q ss_pred HHHHhcCCHHHHHHHHHhhcC-----C-----ChhhHHHHHHH--HHhcCChhHHHHHHH--------HHHHCCCCCcHH
Q 045555 104 DMYCKCGDVEKAQRVFWKMLR-----K-----DKFTWTAMIVG--LAISGHGDTALDMFS--------QMLRASIRLDEV 163 (175)
Q Consensus 104 ~~~~~~~~~~~a~~~~~~~~~-----~-----~~~~~~~li~~--~~~~g~~~~a~~~~~--------~m~~~g~~p~~~ 163 (175)
-..+-.+++..|......+.. | ....+..++.| +-..|+++.|...|. .....+..++..
T Consensus 369 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ 448 (608)
T PF10345_consen 369 WCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELY 448 (608)
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHH
Confidence 334567889999999998843 1 22344444444 336789999999998 444455555555
Q ss_pred HHHH
Q 045555 164 TYVG 167 (175)
Q Consensus 164 t~~~ 167 (175)
++..
T Consensus 449 ila~ 452 (608)
T PF10345_consen 449 ILAA 452 (608)
T ss_pred HHHH
Confidence 5444
No 410
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=45.52 E-value=58 Score=18.63 Aligned_cols=47 Identities=21% Similarity=0.211 Sum_probs=31.5
Q ss_pred cCCHHHHHHHHHhhcC---CChhhHHHHHHHHHhc--------------CChhHHHHHHHHHHH
Q 045555 109 CGDVEKAQRVFWKMLR---KDKFTWTAMIVGLAIS--------------GHGDTALDMFSQMLR 155 (175)
Q Consensus 109 ~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~--------------g~~~~a~~~~~~m~~ 155 (175)
.=+.+.|.+++..+.. ++++.||++.+.+.++ |.+..|.+-|++|..
T Consensus 10 mlDtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RHkF~iskl~pd~~~LG~L~~aL~ey~~~~g 73 (82)
T PF11123_consen 10 MLDTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRHKFQISKLQPDENILGELAAALEEYKKMVG 73 (82)
T ss_pred HHHHHHHHHHHHHhcchhhcChHHHHHHHHHHHHccchhhhcCccHHHHHHHHHHHHHHHHHcC
Confidence 3455677788887754 4788999998888775 334555555665553
No 411
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=45.23 E-value=53 Score=18.05 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=17.9
Q ss_pred cCChhHHHHHHHHHHHCC-CCCcH
Q 045555 140 SGHGDTALDMFSQMLRAS-IRLDE 162 (175)
Q Consensus 140 ~g~~~~a~~~~~~m~~~g-~~p~~ 162 (175)
.-+++.|...|.++...| ++|+.
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhh
Confidence 349999999999999865 55554
No 412
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=44.74 E-value=76 Score=19.76 Aligned_cols=86 Identities=12% Similarity=0.064 Sum_probs=53.3
Q ss_pred ChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhcC
Q 045555 62 RFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISG 141 (175)
Q Consensus 62 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 141 (175)
..++|..+.+=+...+..-..++. .-+..+-+.|++++|...=.....||...|-++ +-.+.|
T Consensus 21 cH~EA~tIa~wL~~~~~~~E~v~l---------------Ir~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL--~a~klG 83 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEMEEVVAL---------------IRLSSLMNRGDYQEALLLPQCHCYPDLEPWAAL--CAWKLG 83 (116)
T ss_dssp -HHHHHHHHHHHHHTTTTHHHHHH---------------HHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHH--HHHHCT
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHH---------------HHHHHHHhhHHHHHHHHhcccCCCccHHHHHHH--HHHhhc
Confidence 467888887777776543333332 456677899999999554444455777777655 445788
Q ss_pred ChhHHHHHHHHHHHCCCCCcHHHH
Q 045555 142 HGDTALDMFSQMLRASIRLDEVTY 165 (175)
Q Consensus 142 ~~~~a~~~~~~m~~~g~~p~~~t~ 165 (175)
--+++...+.++..+| .|....|
T Consensus 84 L~~~~e~~l~rla~~g-~~~~q~F 106 (116)
T PF09477_consen 84 LASALESRLTRLASSG-SPELQAF 106 (116)
T ss_dssp -HHHHHHHHHHHCT-S-SHHHHHH
T ss_pred cHHHHHHHHHHHHhCC-CHHHHHH
Confidence 8899999998887665 3433333
No 413
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=43.51 E-value=1.2e+02 Score=21.75 Aligned_cols=141 Identities=11% Similarity=0.003 Sum_probs=80.5
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCCCChh-HHHHHHH--HHhccCChHHHHHHHHHhHhCCC-CCChHHHHHhhh
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYV-LWTAMID--GYLRVNRFREALTLFREMQTSNI-RRDEFTTVRILT 90 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~li~--~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~ 90 (175)
-+.+||-+.-.+...|+++.|.+.|+...+-|.. -|..+=+ ++.-.|+++-|.+-|.+.-+... .|=...|.=+..
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 4678999999999999999999999998875433 2333322 24456788888776666655442 333333333332
Q ss_pred -ccCcchhHHHHHHHHHHhcC--------------CHHHHHHHHHhhcC---C-------ChhhHHHHHHHHHhcCChhH
Q 045555 91 -TFNNDIFVGIALIDMYCKCG--------------DVEKAQRVFWKMLR---K-------DKFTWTAMIVGLAISGHGDT 145 (175)
Q Consensus 91 -~~~~~~~~~~~li~~~~~~~--------------~~~~a~~~~~~~~~---~-------~~~~~~~li~~~~~~g~~~~ 145 (175)
.+.|.... +.+..-+.+.. .+. .+.+|+.... . =+.||--+.+-+...|+.++
T Consensus 178 ~k~dP~~A~-tnL~qR~~~~d~e~WG~~iV~~yLgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~ 255 (297)
T COG4785 178 QKLDPKQAK-TNLKQRAEKSDKEQWGWNIVEFYLGKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDE 255 (297)
T ss_pred hhCCHHHHH-HHHHHHHHhccHhhhhHHHHHHHHhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 12221111 12222222221 110 1222222211 1 23467778888899999999
Q ss_pred HHHHHHHHHHCC
Q 045555 146 ALDMFSQMLRAS 157 (175)
Q Consensus 146 a~~~~~~m~~~g 157 (175)
|..+|+-....+
T Consensus 256 A~~LfKLaiann 267 (297)
T COG4785 256 ATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHh
Confidence 999998876543
No 414
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=42.83 E-value=71 Score=18.87 Aligned_cols=37 Identities=8% Similarity=0.091 Sum_probs=30.5
Q ss_pred HhcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhcCCh
Q 045555 107 CKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHG 143 (175)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~ 143 (175)
+...+.+.+.++++.+..++...|..+..++-..|..
T Consensus 45 ~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~ 81 (90)
T cd08332 45 AKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQE 81 (90)
T ss_pred cCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChH
Confidence 3456789999999999999999999999999765543
No 415
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=42.54 E-value=49 Score=25.50 Aligned_cols=41 Identities=12% Similarity=-0.066 Sum_probs=28.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhhhc
Q 045555 133 MIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173 (175)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 173 (175)
.+..+.+.+++..|.++|.++..+.++|+..++..++..+|
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~ 176 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLT 176 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHH
Confidence 33455677888888888888888777776666555555444
No 416
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=41.81 E-value=46 Score=22.72 Aligned_cols=8 Identities=13% Similarity=0.181 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 045555 18 SWTTIVSG 25 (175)
Q Consensus 18 ~~~~li~~ 25 (175)
.|..++..
T Consensus 89 ~~~~~~~~ 96 (192)
T cd04402 89 LYEEWMSA 96 (192)
T ss_pred HHHHHHHH
Confidence 34444433
No 417
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=41.79 E-value=54 Score=20.54 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=10.0
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 045555 102 LIDMYCKCGDVEKAQRVFW 120 (175)
Q Consensus 102 li~~~~~~~~~~~a~~~~~ 120 (175)
+|+-+.++.-.++|.++.+
T Consensus 67 ViD~lrRC~T~EEALEVIn 85 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVIN 85 (128)
T ss_pred HHHHHHHhCcHHHHHHHHH
Confidence 4455555555555555444
No 418
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=41.71 E-value=45 Score=24.49 Aligned_cols=95 Identities=13% Similarity=0.075 Sum_probs=52.3
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHh-ccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccC
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYL-RVNRFREALTLFREMQTSNIRRDEFTTVRILTTFN 93 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 93 (175)
....-...+..+...|++..|.++..+..+-- ..+..+ ++.. -..++++.....+++....+. .+.. .
T Consensus 126 ~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l-~~l~~~-~c~~~L~~~L~e~~~~i~~~ld~~l~-------~~~~--~ 194 (291)
T PF10475_consen 126 TVQQTQSRLQELLEEGDYPGALDLIEECQQLL-EELKGY-SCVRHLSSQLQETLELIEEQLDSDLS-------KVCQ--D 194 (291)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-Hhcccc-hHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHH--h
Confidence 33445566777788999999999988766420 011111 0000 112344455555555443211 1111 2
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHH
Q 045555 94 NDIFVGIALIDMYCKCGDVEKAQRVFW 120 (175)
Q Consensus 94 ~~~~~~~~li~~~~~~~~~~~a~~~~~ 120 (175)
-|...|..++.+|.-.|+...+..-+.
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~~~dkl~ 221 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQSAMDKLQ 221 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 255677899999999998766654333
No 419
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=41.63 E-value=1.7e+02 Score=22.83 Aligned_cols=142 Identities=16% Similarity=0.105 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhhcCCC-C------C-hhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHh
Q 045555 17 ISWTTIVSGYINRGQVDIARQYFAQMPE-R------D-YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRI 88 (175)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~-~------~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 88 (175)
.+|-.+.+++-+..++.+++.+-..-.. | + -...-++-++....+.++.+++.|+...+---..+
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~------- 156 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNND------- 156 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccC-------
Confidence 3455555555555566666655443221 1 1 12234466666677789999999888876321111
Q ss_pred hhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-------CChh------hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 89 LTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR-------KDKF------TWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 89 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~~~~------~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
.......+|-.|-+.|.+.+|+++|.-+-.+..+ .|.. ..-.|-.++...|++..|.+..+|..+
T Consensus 157 --D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~k 234 (518)
T KOG1941|consen 157 --DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMK 234 (518)
T ss_pred --CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 0112345677899999999999998877766522 1221 223456678889999999998888654
Q ss_pred C-CCCCcHHHHHH
Q 045555 156 A-SIRLDEVTYVG 167 (175)
Q Consensus 156 ~-g~~p~~~t~~~ 167 (175)
- -...|..++.-
T Consensus 235 lal~~Gdra~~ar 247 (518)
T KOG1941|consen 235 LALQHGDRALQAR 247 (518)
T ss_pred HHHHhCChHHHHH
Confidence 2 23345555543
No 420
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=41.61 E-value=1e+02 Score=21.03 Aligned_cols=48 Identities=10% Similarity=0.140 Sum_probs=23.7
Q ss_pred HhhccCCC--cHHHHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHH
Q 045555 7 IFGNMKNK--DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGY 57 (175)
Q Consensus 7 ~~~~m~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~ 57 (175)
+|+++++| ....|..++.. ..+.+++.+++..+...+..+...++..+
T Consensus 83 fLReLpePli~~~~~~~~i~~---~~~~~~~~~li~~LP~~n~~~L~~l~~~L 132 (187)
T cd04389 83 WLRELEEPLIPDALYQQCISA---SEDPDKAVEIVQKLPIINRLVLCYLINFL 132 (187)
T ss_pred HHHhCCCCCCCHHHHHHHHHh---hcCHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 44555553 23334444332 23455566666666666555555444443
No 421
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=41.42 E-value=58 Score=20.10 Aligned_cols=34 Identities=21% Similarity=0.195 Sum_probs=19.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHH
Q 045555 132 AMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165 (175)
Q Consensus 132 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 165 (175)
.+++.+...+..-.|.++++.|.+.|...+..|.
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TV 45 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATV 45 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHH
Confidence 4555555555566666666666666655555443
No 422
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=41.37 E-value=59 Score=20.89 Aligned_cols=31 Identities=23% Similarity=0.205 Sum_probs=24.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 045555 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIR 159 (175)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 159 (175)
++..++-.+...|+++.|.++.+-.+++|+.
T Consensus 50 Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 50 VLMTVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred hHHhhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 5566777778889999999999888888744
No 423
>PRK05629 hypothetical protein; Validated
Probab=40.97 E-value=1.5e+02 Score=22.03 Aligned_cols=30 Identities=10% Similarity=0.058 Sum_probs=23.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCcHH
Q 045555 133 MIVGLAISGHGDTALDMFSQMLRASIRLDEV 163 (175)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 163 (175)
++++.. .|+..+|..+++++...|..|-..
T Consensus 200 l~dAv~-~g~~~~Al~~l~~l~~~g~~pi~i 229 (318)
T PRK05629 200 IADLAC-AGQVSKAVASTRRALQLGVSPVAL 229 (318)
T ss_pred HHHHHH-cCCHHHHHHHHHHHHHcCCCcHHH
Confidence 444443 689999999999999999999554
No 424
>PRK13342 recombination factor protein RarA; Reviewed
Probab=40.80 E-value=1.7e+02 Score=22.71 Aligned_cols=43 Identities=23% Similarity=0.140 Sum_probs=31.7
Q ss_pred hHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCcHHHHHHHHhh
Q 045555 129 TWTAMIVGLAI---SGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171 (175)
Q Consensus 129 ~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 171 (175)
....+++++.+ .++.+.|...+..|.+.|..|....-..++.+
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34455555554 47999999999999999999987665555544
No 425
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=40.67 E-value=35 Score=21.60 Aligned_cols=27 Identities=11% Similarity=0.276 Sum_probs=19.3
Q ss_pred cCChhHHHHHHHHHHHCCCCCcHHHHH
Q 045555 140 SGHGDTALDMFSQMLRASIRLDEVTYV 166 (175)
Q Consensus 140 ~g~~~~a~~~~~~m~~~g~~p~~~t~~ 166 (175)
.|+...|.++++.+..+|+.|-...+.
T Consensus 10 ~G~~~ra~riL~~L~~Eg~ep~~lLw~ 36 (125)
T PF14840_consen 10 AGDAKRALRILQGLQAEGVEPPILLWA 36 (125)
T ss_dssp TT-HHHHHHHHHHHHHTT--HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCccHHHHHHH
Confidence 688899999999999999888665443
No 426
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=40.38 E-value=2.7e+02 Score=24.81 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=35.7
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCcHHHHHHHHhhh
Q 045555 125 KDKFTWTAMIVGLAISGHGDTALDMFSQMLR-ASIRLDEVTYVGVLSAC 172 (175)
Q Consensus 125 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~ 172 (175)
.|..+|..-.......|++..|.+++.++.+ .|-+++..-+..++..|
T Consensus 1229 ~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~ 1277 (1304)
T KOG1114|consen 1229 SDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELL 1277 (1304)
T ss_pred CCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 4666777767777788999999999988877 47778777666655443
No 427
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=39.96 E-value=78 Score=18.48 Aligned_cols=40 Identities=18% Similarity=0.308 Sum_probs=33.1
Q ss_pred HhcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhcCChhHH
Q 045555 107 CKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTA 146 (175)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 146 (175)
+...+.+.+.++.+.+..++...|..+..++-..|...-|
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 4567789999999999999999999999999887765544
No 428
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.89 E-value=1.9e+02 Score=23.07 Aligned_cols=40 Identities=5% Similarity=0.104 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHH
Q 045555 128 FTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGV 168 (175)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 168 (175)
.....++++. +.++.+.|..++.+|...|..|....-..+
T Consensus 245 ~~i~~li~si-~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~ 284 (472)
T PRK14962 245 EVVRDYINAI-FNGDVKRVFTVLDDVYYSGKDYEVLIQQAI 284 (472)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3445555555 568999999999999999988877544433
No 429
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.86 E-value=1.9e+02 Score=22.83 Aligned_cols=61 Identities=11% Similarity=0.213 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHhhcCCC------CChhHHHHHHHHHhccCChHHHHHHHHHhHhC
Q 045555 16 VISWTTIVSGYINRGQVDIARQYFAQMPE------RDYVLWTAMIDGYLRVNRFREALTLFREMQTS 76 (175)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (175)
.....-+...|...|+++.|...|.+.+. ..+..|-.+|..-...|+|........+..+.
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 44677888899999999999999999664 24445777777778888888888887777664
No 430
>PF15469 Sec5: Exocyst complex component Sec5
Probab=39.73 E-value=1.2e+02 Score=20.44 Aligned_cols=25 Identities=16% Similarity=0.379 Sum_probs=18.7
Q ss_pred CChhHHHHHHHHHHHCCCCCcHHHH
Q 045555 141 GHGDTALDMFSQMLRASIRLDEVTY 165 (175)
Q Consensus 141 g~~~~a~~~~~~m~~~g~~p~~~t~ 165 (175)
...++..++++.+.+-+..+|+..+
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi~~ 177 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPIWY 177 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHH
Confidence 5677788888888888888887543
No 431
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=39.37 E-value=78 Score=21.84 Aligned_cols=25 Identities=8% Similarity=0.125 Sum_probs=21.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 132 AMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 132 ~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
..+..|.+.|.+++|.+++++..+.
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~d 140 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFSD 140 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhcC
Confidence 4556788999999999999998863
No 432
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=38.99 E-value=1.1e+02 Score=19.88 Aligned_cols=50 Identities=20% Similarity=0.183 Sum_probs=24.8
Q ss_pred HHhcCCHHHHHHHHHhhcCC--C--hhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 106 YCKCGDVEKAQRVFWKMLRK--D--KFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 106 ~~~~~~~~~a~~~~~~~~~~--~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
+...++.+.+...+...... + ...+..+-..+...++++.|...+.....
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 44455555555555555331 1 23344455555555555555555555543
No 433
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=38.96 E-value=70 Score=21.72 Aligned_cols=18 Identities=28% Similarity=0.741 Sum_probs=7.2
Q ss_pred hhcCCCC--ChhHHHHHHHH
Q 045555 39 FAQMPER--DYVLWTAMIDG 56 (175)
Q Consensus 39 ~~~m~~~--~~~~~~~li~~ 56 (175)
++++++| +...|..++.+
T Consensus 81 LReLPepLi~~~~~~~~~~~ 100 (187)
T cd04403 81 FRELPEPLFPYSLFNDFVAA 100 (187)
T ss_pred HhcCCCCcCCHHHHHHHHHH
Confidence 3444443 22334444443
No 434
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=38.92 E-value=1.5e+02 Score=21.65 Aligned_cols=90 Identities=16% Similarity=0.090 Sum_probs=53.7
Q ss_pred hHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-CChhhHHHHHHHHHhcC
Q 045555 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR-KDKFTWTAMIVGLAISG 141 (175)
Q Consensus 63 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g 141 (175)
.+.|.+.|++....+..++ . ..+......++....+.|.-+.-..+++.... ++......++.+++...
T Consensus 146 ~~~a~~~~~~~~~~~~~~~-~---------~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~ 215 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPE-S---------SIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSP 215 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TT-S---------TS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHHhcCCcccc-c---------ccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccC
Confidence 7888889999888532211 0 11223334566677777776666666666644 35666777888888887
Q ss_pred ChhHHHHHHHHHHHCC-CCCcH
Q 045555 142 HGDTALDMFSQMLRAS-IRLDE 162 (175)
Q Consensus 142 ~~~~a~~~~~~m~~~g-~~p~~ 162 (175)
+.+...++++.....+ +++..
T Consensus 216 d~~~~~~~l~~~l~~~~v~~~d 237 (324)
T PF11838_consen 216 DPELLKRLLDLLLSNDKVRSQD 237 (324)
T ss_dssp -HHHHHHHHHHHHCTSTS-TTT
T ss_pred CHHHHHHHHHHHcCCcccccHH
Confidence 8877778887777754 44443
No 435
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=38.58 E-value=1.6e+02 Score=21.84 Aligned_cols=93 Identities=9% Similarity=0.019 Sum_probs=58.7
Q ss_pred HHHHHHHHhcCChhHHHH----HhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcc
Q 045555 20 TTIVSGYINRGQVDIARQ----YFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNND 95 (175)
Q Consensus 20 ~~li~~~~~~~~~~~a~~----~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 95 (175)
..=|.+++..++|.++.. .|+.-.+--..+...-|-.|++.+.+..+.++-...++..-.-+...|..+..
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaE----- 161 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAE----- 161 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHH-----
Confidence 344777888888888654 33333332333444445568899999999999999988643223233432222
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 045555 96 IFVGIALIDMYCKCGDVEKAQRVFWK 121 (175)
Q Consensus 96 ~~~~~~li~~~~~~~~~~~a~~~~~~ 121 (175)
-.+...+.=.|.+++|+++...
T Consensus 162 ----LyLl~VLlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 162 ----LYLLHVLLPLGHFSEAEELVVG 183 (309)
T ss_pred ----HHHHHHHhccccHHHHHHHHhc
Confidence 2355555667999999888754
No 436
>PRK10941 hypothetical protein; Provisional
Probab=38.29 E-value=1.6e+02 Score=21.56 Aligned_cols=76 Identities=13% Similarity=-0.039 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCcHHHHHHHHhhh
Q 045555 97 FVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMFSQMLRA-SIRLDEVTYVGVLSAC 172 (175)
Q Consensus 97 ~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~ 172 (175)
.+.+.+-.+|.+.++++.|.++.+.+.. | +..-+---.-.|.+.|.+..|..=++..+++ --.|+.......+...
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 4567899999999999999999999844 4 4444555566788999999999988888765 4556666666555543
No 437
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=38.06 E-value=1.3e+02 Score=20.46 Aligned_cols=13 Identities=8% Similarity=-0.166 Sum_probs=5.4
Q ss_pred cCChHHHHHHHHH
Q 045555 60 VNRFREALTLFRE 72 (175)
Q Consensus 60 ~~~~~~a~~~~~~ 72 (175)
.|+..+..++-++
T Consensus 48 ~G~~~~i~~l~~~ 60 (190)
T cd04400 48 SGSASVIKQLKER 60 (190)
T ss_pred CCcHHHHHHHHHH
Confidence 3444444444333
No 438
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=37.86 E-value=53 Score=18.45 Aligned_cols=36 Identities=11% Similarity=0.255 Sum_probs=27.9
Q ss_pred hcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCCh
Q 045555 28 NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63 (175)
Q Consensus 28 ~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~ 63 (175)
.....+.+..+++.+.+++..+|..++.++-..+..
T Consensus 39 ~~~~~~k~~~Lld~l~~kg~~af~~F~~~L~~~~~~ 74 (80)
T cd01671 39 ESTRQDKARKLLDILPRKGPKAFQSFLQALQETDQP 74 (80)
T ss_pred CCChHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCh
Confidence 344678888888888888888888888888766643
No 439
>cd00045 DED The Death Effector Domain: a protein-protein interaction domain. Death Effector Domains comprise a subfamily of the Death Domain (DD) superfamily. DED-containing proteins include Fas-Associated via Death Domain (FADD), Astrocyte phosphoprotein PEA-15, the initiator caspases (caspase-8 and -10), and FLICE-inhibitory protein (FLIP), among others. These proteins are prominent components of the programmed cell death (apoptosis) pathway. Some members also have non-apoptotic functions such as regulation of insulin signaling (DEDD and PEA15) and cell cycle progression (DEDD). DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes.
Probab=37.63 E-value=80 Score=17.97 Aligned_cols=40 Identities=13% Similarity=0.303 Sum_probs=27.2
Q ss_pred ChHHHHHHHHHhHhCCC-CCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHH
Q 045555 62 RFREALTLFREMQTSNI-RRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQR 117 (175)
Q Consensus 62 ~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 117 (175)
+...+.++|..+.+.|. .|+-..+ +.+.+..-|+.+-+..
T Consensus 35 ~~~s~l~lf~~Le~~~~l~~~nl~~----------------L~~lL~~i~R~DL~~~ 75 (77)
T cd00045 35 KIKTPFDLFLVLERQGKLGEDNLSY----------------LEELLRSIGRNDLLKK 75 (77)
T ss_pred ccCCHHHHHHHHHHcCCCCCchHHH----------------HHHHHHHcCHHHHHHH
Confidence 46778899999999884 5543333 6666667776666543
No 440
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=37.57 E-value=1.1e+02 Score=19.56 Aligned_cols=58 Identities=10% Similarity=0.154 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhhcCCCC-C-hhHHHHHHHHHhccCChHHHHHHHHHhH
Q 045555 17 ISWTTIVSGYINRGQVDIARQYFAQMPER-D-YVLWTAMIDGYLRVNRFREALTLFREMQ 74 (175)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~-~~~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (175)
.+--++..++.-.|..++|.++++..+-. + ...=.-++..|.++.+.++..++-++..
T Consensus 67 scvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~l 126 (127)
T PF04034_consen 67 SCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEYL 126 (127)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 45568888888999999999999998853 2 2334578999999999988888766543
No 441
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=37.44 E-value=1.6e+02 Score=21.39 Aligned_cols=99 Identities=16% Similarity=0.260 Sum_probs=61.6
Q ss_pred hHHHHHHHHHhccCC---hHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 48 VLWTAMIDGYLRVNR---FREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 48 ~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
.+...++.+|...+. .++|..+++.+......+.. ++-.-++.+.+.++.+.+.+.+..|+.
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~---------------~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPE---------------VFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcH---------------HHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 467788888988877 45566777777665432221 222356666668899999999999854
Q ss_pred C---ChhhHHHHHHHH---HhcCChhHHHHHHHHHHHCCCCCcH
Q 045555 125 K---DKFTWTAMIVGL---AISGHGDTALDMFSQMLRASIRLDE 162 (175)
Q Consensus 125 ~---~~~~~~~li~~~---~~~g~~~~a~~~~~~m~~~g~~p~~ 162 (175)
. ....+...+..+ ... ....|...+.+++...+.|..
T Consensus 150 ~~~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 150 SVDHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred hcccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 3 234455555444 332 345666777666665555554
No 442
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.29 E-value=2.3e+02 Score=23.14 Aligned_cols=117 Identities=11% Similarity=0.070 Sum_probs=69.9
Q ss_pred HHhcCChhHHHHHhhcCCC--------CChhHHHHHHHHHhccC-----ChHHHHHHHHHhHhCCCCCChHHHHHhhhcc
Q 045555 26 YINRGQVDIARQYFAQMPE--------RDYVLWTAMIDGYLRVN-----RFREALTLFREMQTSNIRRDEFTTVRILTTF 92 (175)
Q Consensus 26 ~~~~~~~~~a~~~~~~m~~--------~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 92 (175)
++...+++.|...|+...+ -+....+-+-.+|.+.. +.+.|..++.+.-..|.
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-------------- 324 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-------------- 324 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC--------------
Confidence 4467888999998887744 13445666777777654 56778888888888763
Q ss_pred CcchhHHHHHHHHHHh-cCCHHHHHHHHHhhcCC-ChhhHHHHHHHH----HhcCChhHHHHHHHHHHHCC
Q 045555 93 NNDIFVGIALIDMYCK-CGDVEKAQRVFWKMLRK-DKFTWTAMIVGL----AISGHGDTALDMFSQMLRAS 157 (175)
Q Consensus 93 ~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~-~~~~~~~li~~~----~~~g~~~~a~~~~~~m~~~g 157 (175)
|+....-..+..... ..+...|.+.|...-.. ....+-.+-..| ....+.++|..++++..++|
T Consensus 325 -~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 325 -PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred -chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 222222222222222 34677888888887543 222222222211 13347778888888888777
No 443
>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=36.62 E-value=1.8e+02 Score=21.90 Aligned_cols=55 Identities=9% Similarity=0.250 Sum_probs=35.5
Q ss_pred HHHHhhcCCChhhHHH-----------HHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhhhc
Q 045555 117 RVFWKMLRKDKFTWTA-----------MIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173 (175)
Q Consensus 117 ~~~~~~~~~~~~~~~~-----------li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 173 (175)
.+++.+..||++-|-. ++.-||.+||+....+-|++ ++..-|....|..+.+.|.
T Consensus 70 ~lLkQL~HpNIVqYy~~~f~~~~evlnivmE~c~~GDLsqmIk~~K~--qkr~ipE~~Vwk~f~QL~~ 135 (375)
T KOG0591|consen 70 SLLKQLNHPNIVQYYAHSFIEDNEVLNIVMELCDAGDLSQMIKHFKK--QKRLIPEKTVWKYFVQLCR 135 (375)
T ss_pred HHHHhcCCchHHHHHHHhhhccchhhHHHHHhhcccCHHHHHHHHHh--ccccCchHHHHHHHHHHHH
Confidence 4555555666554322 33456778888887777765 3456788888888777663
No 444
>COG3294 HD supefamily hydrolase [General function prediction only]
Probab=36.40 E-value=29 Score=24.64 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHCCCCCcHHH
Q 045555 144 DTALDMFSQMLRASIRLDEVT 164 (175)
Q Consensus 144 ~~a~~~~~~m~~~g~~p~~~t 164 (175)
..|.++|+.+.++|++|+..+
T Consensus 67 ~~Al~i~~lL~~~Gv~ps~v~ 87 (269)
T COG3294 67 NSALAIYKLLLEKGVKPSGVT 87 (269)
T ss_pred chHHHHHHHHHhcCCCccccc
Confidence 468999999999999998543
No 445
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.32 E-value=3e+02 Score=24.16 Aligned_cols=26 Identities=15% Similarity=0.370 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcCChhHHHHHhhcCCC
Q 045555 19 WTTIVSGYINRGQVDIARQYFAQMPE 44 (175)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~ 44 (175)
|..|+..|...|..++|+++|.....
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 55566666666666666666665543
No 446
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=35.96 E-value=55 Score=15.57 Aligned_cols=16 Identities=13% Similarity=0.420 Sum_probs=7.8
Q ss_pred HHHHhccCChHHHHHH
Q 045555 54 IDGYLRVNRFREALTL 69 (175)
Q Consensus 54 i~~~~~~~~~~~a~~~ 69 (175)
...+-..|++++|..+
T Consensus 8 a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 8 AYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHTT-HHHHHHH
T ss_pred HHHHHHHhhHHHHHHH
Confidence 3344455555555555
No 447
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=35.36 E-value=1.9e+02 Score=21.71 Aligned_cols=97 Identities=10% Similarity=0.131 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhhcCCC--------CChhHHHHHHHHHhccCC-hHHHHHHHHHhHhCCCCCChHHHHH
Q 045555 17 ISWTTIVSGYINRGQVDIARQYFAQMPE--------RDYVLWTAMIDGYLRVNR-FREALTLFREMQTSNIRRDEFTTVR 87 (175)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~--------~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ 87 (175)
.+...+...|.+.|+...-.+.....++ .....-.+|+.-+....+ ++..+.+.+...+.-.+-.....
T Consensus 46 ~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fL-- 123 (421)
T COG5159 46 ATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFL-- 123 (421)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 4566778888888888776666555443 244556677777766643 77777777766553222211111
Q ss_pred hhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 045555 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM 122 (175)
Q Consensus 88 l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 122 (175)
-...=.-+|..+-+.|.+.+|..+...+
T Consensus 124 -------r~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 124 -------RLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred -------HHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 1111235888999999999998887765
No 448
>cd08340 DED_c-FLIP_repeat2 Death Effector Domain, repeat 2, of cellular FLICE-Inhibitory Protein. Death Effector Domain (DED), repeat 2, similar to that found in cellular FLICE-inhibitory protein (c-FLIP/CASH, also known as Casper/iFLICE/FLAME-1/CLARP/MRIT/usurpin). c-FLIP is a catalytically inactive homolog of the initator procaspases-8 and -10. It negatively influences apoptotic signaling by interfering with the efficient formation of the Death Inducing Signalling Complex (DISC). At low levels, c-FLIP has been shown to enhance apoptotic signaling by allosterically activating caspase-8. As a modulator of the initiator caspases, c-FLIP regulates life and death in various types of cells and tissues. All members contain two N-terminal DEDs and a C-terminal pseudo-caspase domain. DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-as
Probab=35.05 E-value=94 Score=18.00 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=27.1
Q ss_pred CChHHHHHHHHHhHhCCC-CCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHH
Q 045555 61 NRFREALTLFREMQTSNI-RRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKA 115 (175)
Q Consensus 61 ~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a 115 (175)
.....+.++|.+|.+.|. .|+-..+ +-+.+..-++.+..
T Consensus 36 e~~~s~l~lf~~Lek~~~l~~~nl~~----------------L~elL~~I~R~DLl 75 (81)
T cd08340 36 AKDKSFLELVLELEKLNLVSPNKVDL----------------LEDCLRNIRRIDLK 75 (81)
T ss_pred cccCCHHHHHHHHHhcCCCCCccHHH----------------HHHHHHHcCHHHHH
Confidence 346788999999999984 5554433 66666666666655
No 449
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=34.78 E-value=1.8e+02 Score=21.19 Aligned_cols=98 Identities=10% Similarity=0.003 Sum_probs=54.9
Q ss_pred HhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--CChhhHH-HH
Q 045555 57 YLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--KDKFTWT-AM 133 (175)
Q Consensus 57 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~-~l 133 (175)
|.....++.|+.-|.+... +.|+..+| |+.=+-++.+.++|+.+..--....+ |+..-=. -+
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y-------------~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~fl 84 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASY-------------YTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFL 84 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchh-------------hhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHH
Confidence 3444567777776655555 55666555 45566677778888877665555543 3322212 22
Q ss_pred HHHHHhcCChhHHHHHHHHHH----HCCCCCcHHHHHHHH
Q 045555 134 IVGLAISGHGDTALDMFSQML----RASIRLDEVTYVGVL 169 (175)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~----~~g~~p~~~t~~~ll 169 (175)
-.++.....+++|...+.+.. ++.++|-..+...|.
T Consensus 85 g~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~ 124 (284)
T KOG4642|consen 85 GQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALR 124 (284)
T ss_pred HHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHH
Confidence 334455667777777776652 234444444444443
No 450
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=34.23 E-value=2.1e+02 Score=21.82 Aligned_cols=71 Identities=14% Similarity=0.062 Sum_probs=34.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhcCChhHH-HHHHHHHHHCCCCCcHHHHHHHHhhhcC
Q 045555 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTA-LDMFSQMLRASIRLDEVTYVGVLSACTH 174 (175)
Q Consensus 101 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 174 (175)
-+.+.++|.++-+.+..+-+....--.....++..++=...-.++. ..+++.+... ||..+...++.|.++
T Consensus 171 GIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~ 242 (340)
T PF12069_consen 171 GIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSS 242 (340)
T ss_pred HHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcC
Confidence 4666666666666655555555443333444444444333322222 2222333222 666666666666554
No 451
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=34.17 E-value=1.6e+02 Score=20.52 Aligned_cols=19 Identities=16% Similarity=0.466 Sum_probs=9.0
Q ss_pred hhcCCCC--ChhHHHHHHHHH
Q 045555 39 FAQMPER--DYVLWTAMIDGY 57 (175)
Q Consensus 39 ~~~m~~~--~~~~~~~li~~~ 57 (175)
|+++++| +...|..++.+.
T Consensus 84 LReLPePLip~~~y~~~~~~~ 104 (207)
T cd04379 84 LRELPEPLITPQLYEMVLEAL 104 (207)
T ss_pred HHhCCCccCCHHHHHHHHHHH
Confidence 4455554 333445555444
No 452
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=33.99 E-value=82 Score=21.98 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=12.6
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHh
Q 045555 35 ARQYFAQMPERDYVLWTAMIDGYL 58 (175)
Q Consensus 35 a~~~~~~m~~~~~~~~~~li~~~~ 58 (175)
...++..++.++..+.-.++..+.
T Consensus 127 l~~~l~~LP~~n~~~L~~li~hL~ 150 (212)
T cd04399 127 LQSTLSQLPKSHIATLDAIITHFY 150 (212)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHH
Confidence 344444555555555555555544
No 453
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=33.98 E-value=47 Score=14.21 Aligned_cols=16 Identities=19% Similarity=0.383 Sum_probs=10.0
Q ss_pred CChhHHHHHHHHHHHC
Q 045555 141 GHGDTALDMFSQMLRA 156 (175)
Q Consensus 141 g~~~~a~~~~~~m~~~ 156 (175)
|+.+.|.++|+++...
T Consensus 1 ~~~~~~r~i~e~~l~~ 16 (33)
T smart00386 1 GDIERARKIYERALEK 16 (33)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 4556667777776653
No 454
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=33.91 E-value=1.7e+02 Score=20.75 Aligned_cols=79 Identities=10% Similarity=0.070 Sum_probs=51.8
Q ss_pred hhHHHHHhhcCCCC-----------ChhHHHHHHHHHhccC---------ChHHHHHHHHHhHhCCCCCChHHHHHhhhc
Q 045555 32 VDIARQYFAQMPER-----------DYVLWTAMIDGYLRVN---------RFREALTLFREMQTSNIRRDEFTTVRILTT 91 (175)
Q Consensus 32 ~~~a~~~~~~m~~~-----------~~~~~~~li~~~~~~~---------~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (175)
.+.|..++..|--. ..--|-.+..+|.+.| +.+.-.++++-.++.|++
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~------------ 204 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVE------------ 204 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCC------------
Confidence 45677777776532 3345777778888776 345566666777777752
Q ss_pred cCcchhHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 045555 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123 (175)
Q Consensus 92 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 123 (175)
.-=+.+|+++|+.-.-.-+.++..+++..+.
T Consensus 205 -kviPHIYssiIDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 205 -KVIPHVYSSIIDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred -eeccccceeccccccCCCCHHHHHHHHHHhh
Confidence 1113456778887777888888888887653
No 455
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=33.87 E-value=1.1e+02 Score=20.96 Aligned_cols=18 Identities=28% Similarity=0.639 Sum_probs=7.3
Q ss_pred hhcCCCC--ChhHHHHHHHH
Q 045555 39 FAQMPER--DYVLWTAMIDG 56 (175)
Q Consensus 39 ~~~m~~~--~~~~~~~li~~ 56 (175)
++++++| +...|..++.+
T Consensus 81 LReLPePLip~~~y~~~~~~ 100 (196)
T cd04387 81 FRELPEPLFTDELYPNFAEG 100 (196)
T ss_pred HHhCCCccCCHHHHHHHHHH
Confidence 3344443 33334444443
No 456
>cd08810 CARD_BCL10 Caspase activation and recruitment domain of B-cell lymphoma 10. Caspase activation and recruitment domain (CARD) similar to that found in BCL10 (B-cell lymphoma 10). BCL10 and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1) are the integral components of CBM signalosomes. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. Both CARMA1 and CARD9 associate with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by asso
Probab=33.82 E-value=82 Score=18.49 Aligned_cols=32 Identities=13% Similarity=0.070 Sum_probs=15.6
Q ss_pred hcCChhHHHHHhhcCCCCChhHHHHHHHHHhcc
Q 045555 28 NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60 (175)
Q Consensus 28 ~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~ 60 (175)
+..+.+.|..+++.+. ++...|.+++.++-..
T Consensus 42 ~~t~~~qa~~LLdiL~-rGp~Af~~F~esL~~~ 73 (84)
T cd08810 42 RTTSRKQAGKLLDILA-ENPKGLDALIESIRRE 73 (84)
T ss_pred cCCcHHHHHHHHHHHh-hCchHHHHHHHHHHHc
Confidence 4444445555555544 5555555555544443
No 457
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=33.68 E-value=90 Score=25.88 Aligned_cols=81 Identities=14% Similarity=0.147 Sum_probs=42.4
Q ss_pred cCChhHHHHHhhcCC--CC--ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHH
Q 045555 29 RGQVDIARQYFAQMP--ER--DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALID 104 (175)
Q Consensus 29 ~~~~~~a~~~~~~m~--~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~ 104 (175)
.|+...|...+.... .| .-+....|.+.+.+.|...+|-.++.+-+... ...+ .++-.+..
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sep--------------l~~~~~g~ 684 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEP--------------LTFLSLGN 684 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCc--------------hHHHhcch
Confidence 355555555444322 11 22223344444455555555555555555433 1122 22246777
Q ss_pred HHHhcCCHHHHHHHHHhhcC
Q 045555 105 MYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 105 ~~~~~~~~~~a~~~~~~~~~ 124 (175)
+|....+++.|.+.|++..+
T Consensus 685 ~~l~l~~i~~a~~~~~~a~~ 704 (886)
T KOG4507|consen 685 AYLALKNISGALEAFRQALK 704 (886)
T ss_pred hHHHHhhhHHHHHHHHHHHh
Confidence 77777888888888877644
No 458
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=33.12 E-value=1.4e+02 Score=19.34 Aligned_cols=47 Identities=11% Similarity=-0.000 Sum_probs=35.8
Q ss_pred cCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHh
Q 045555 123 LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLS 170 (175)
Q Consensus 123 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 170 (175)
..|+..+-..-++++-+-+|+..|.++|+-.+.+ +.+....|..+++
T Consensus 80 lVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 80 LVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred cCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence 4578889999999999999999999999988764 3333334555443
No 459
>PF01371 Trp_repressor: Trp repressor protein; InterPro: IPR000831 The Trp repressor (TrpR) binds to at least five operators in the Escherichia coli genome, repressing gene expression. The operators at which it binds vary considerably in DNA sequence and location within the promoter; when bound to the Trp operon it recognises the sequence 5'-ACTAGT-3' and acts to prevent the initiation of transcription. The TrpR controls the trpEDCBA (trpO) operon and the genes for trpR, aroH, mtr and aroL, which are involved in the biosynthesis and uptake of the amino acid tryptophan []. The repressor binds to the operators only in the presence of L-tryptophan, thereby controlling the intracellular level of its effector; the complex also regulates Trp repressor biosynthesis by binding to its own regulatory region. TrpR acts as a dimer that is composed of identical 6-helical subunits, where four of the helices form the core of the protein and intertwine with the corresponding helices from the other subunit.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3FRW_H 3KOR_A 3SSW_N 1P6Z_N 1CO0_B 1JHG_A 1WRT_S 1WRS_R 1WRP_R 1RCS_B ....
Probab=33.03 E-value=68 Score=18.96 Aligned_cols=28 Identities=18% Similarity=0.111 Sum_probs=23.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcCCC
Q 045555 99 GIALIDMYCKCGDVEKAQRVFWKMLRKD 126 (175)
Q Consensus 99 ~~~li~~~~~~~~~~~a~~~~~~~~~~~ 126 (175)
|..++++.....+.+++..+|+.+..|+
T Consensus 3 ~~~l~~~i~~l~~~ee~~~f~~dL~T~~ 30 (87)
T PF01371_consen 3 WDELFEAILSLKDEEECYDFFEDLCTPD 30 (87)
T ss_dssp HHHHHHHHHCHHCHHCHHHHHHHHSSHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCHH
Confidence 4578888999999999999999887663
No 460
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=32.95 E-value=80 Score=21.89 Aligned_cols=50 Identities=10% Similarity=0.237 Sum_probs=20.3
Q ss_pred hhcCCCC--ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhh
Q 045555 39 FAQMPER--DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89 (175)
Q Consensus 39 ~~~m~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 89 (175)
++++++| +...|..++.+. +..+.++-+..+..+...=..++..+...++
T Consensus 97 LReLPePLi~~~~y~~~i~~~-~~~~~~~ri~~l~~li~~LP~~n~~~L~~L~ 148 (203)
T cd04374 97 LRNLPEPLMTYELHNDFINAA-KSENLESRVNAIHSLVHKLPEKNREMLELLI 148 (203)
T ss_pred HHcCCCCcCCHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 4455554 333455555432 3333333333333443332333333333333
No 461
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=32.93 E-value=2.5e+02 Score=22.23 Aligned_cols=121 Identities=17% Similarity=0.149 Sum_probs=77.1
Q ss_pred HHhcCChhHHHHHhhcCCC----CChh--------HHHHHHHHHhccCChHHHHHHHHHhHhC-CCCCChHHHHHhhhcc
Q 045555 26 YINRGQVDIARQYFAQMPE----RDYV--------LWTAMIDGYLRVNRFREALTLFREMQTS-NIRRDEFTTVRILTTF 92 (175)
Q Consensus 26 ~~~~~~~~~a~~~~~~m~~----~~~~--------~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~ 92 (175)
+..++++++|..+-+...- .|.. +|--+-.++-..|+.......+...++. .+..|..+..++
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavL---- 211 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVL---- 211 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHH----
Confidence 3456778888877665432 1222 2333444455667766666666666553 344454444433
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHH-------HHHHHHhcCChhHHHHHHHHHHHC
Q 045555 93 NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTA-------MIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 93 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
.|.|+..|...+.++.|..+..+..-|...+-|- +....+-.+++..|.+.|.....+
T Consensus 212 ------iN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rk 276 (493)
T KOG2581|consen 212 ------INLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRK 276 (493)
T ss_pred ------HHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHh
Confidence 4799999999999999999999998774433221 222334477889999988877654
No 462
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=32.83 E-value=1.1e+02 Score=20.74 Aligned_cols=7 Identities=29% Similarity=1.047 Sum_probs=2.9
Q ss_pred hhcCCCC
Q 045555 39 FAQMPER 45 (175)
Q Consensus 39 ~~~m~~~ 45 (175)
++++++|
T Consensus 79 LreLPeP 85 (185)
T cd04373 79 FSELPDP 85 (185)
T ss_pred HhcCCch
Confidence 3344443
No 463
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=32.47 E-value=1.3e+02 Score=20.47 Aligned_cols=8 Identities=13% Similarity=0.526 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 045555 49 LWTAMIDG 56 (175)
Q Consensus 49 ~~~~li~~ 56 (175)
.|..++.+
T Consensus 90 ~y~~~~~~ 97 (186)
T cd04406 90 LYEEFLRA 97 (186)
T ss_pred HHHHHHHH
Confidence 34444433
No 464
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=32.23 E-value=1.6e+02 Score=19.72 Aligned_cols=39 Identities=10% Similarity=0.047 Sum_probs=24.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHH
Q 045555 127 KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165 (175)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 165 (175)
+..=..++..+...++.-.|.++++.+.+.+..++..|.
T Consensus 25 T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTV 63 (169)
T PRK11639 25 TPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTV 63 (169)
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchH
Confidence 333445555555556667778888888777766655553
No 465
>COG5053 CDC33 Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis]
Probab=32.18 E-value=1e+02 Score=21.34 Aligned_cols=49 Identities=4% Similarity=0.107 Sum_probs=44.4
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCc
Q 045555 46 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN 94 (175)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 94 (175)
....|+-++..-+.-.-.++..-+++.+...+.-|-..+|+....|+.|
T Consensus 54 g~esw~dlLk~I~tf~Tveefwyi~~~I~~a~~lprksdynvFreGIrP 102 (217)
T COG5053 54 GLESWSDLLKSIITFETVEEFWYILHNISDASRLPRKSDYNVFREGIRP 102 (217)
T ss_pred chhHHHHHHhhheeeecHHHHHHHHhcCCcccccchhhhHHHHHcCCCc
Confidence 5667999999999999999999999999999999999999999887766
No 466
>PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length. It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G.
Probab=32.13 E-value=75 Score=20.22 Aligned_cols=34 Identities=12% Similarity=0.331 Sum_probs=19.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHH
Q 045555 129 TWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEV 163 (175)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 163 (175)
....++.+. ..|+..++.+.++++.+.|..|...
T Consensus 17 ~i~~l~~ai-~~~d~~~~l~~~~~l~~~G~d~~~~ 50 (143)
T PF12169_consen 17 QIFELLDAI-LEGDAAEALELLNELLEQGKDPKQF 50 (143)
T ss_dssp HHHHHHHHH-HTT-HHHHHHHHHHHHHCT--HHHH
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCHHHH
Confidence 333444444 3567777777777777777766543
No 467
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=31.78 E-value=3.9e+02 Score=26.41 Aligned_cols=46 Identities=11% Similarity=0.046 Sum_probs=21.1
Q ss_pred HHhcCChhHHHHHhhcC----CCC--ChhHHHHHHHHHhccCChHHHHHHHH
Q 045555 26 YINRGQVDIARQYFAQM----PER--DYVLWTAMIDGYLRVNRFREALTLFR 71 (175)
Q Consensus 26 ~~~~~~~~~a~~~~~~m----~~~--~~~~~~~li~~~~~~~~~~~a~~~~~ 71 (175)
=.+.+.+..|...++.- .+. ...-|-.+...|..-+++++...+..
T Consensus 1393 Sfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~ 1444 (2382)
T KOG0890|consen 1393 SFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSA 1444 (2382)
T ss_pred HHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHH
Confidence 33555556666666552 111 11223333335555555555554444
No 468
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=31.69 E-value=43 Score=23.10 Aligned_cols=71 Identities=10% Similarity=0.228 Sum_probs=0.0
Q ss_pred hccCCCcHHHHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCC
Q 045555 9 GNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80 (175)
Q Consensus 9 ~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 80 (175)
+.+....+.....++..|...|+.+..+++.-.+--..... +.++..|-+.|-++.-+-++.+....-+.|
T Consensus 15 ~~i~~lpp~v~k~lv~~y~~~~~~~~lE~lI~~LD~~~LDi-dq~i~lC~~~~LydalIYv~n~~l~DYvTP 85 (196)
T PF12816_consen 15 GKIKSLPPEVFKALVEHYASKGRLERLEQLILHLDPSSLDI-DQVIKLCKKHGLYDALIYVWNRALNDYVTP 85 (196)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHhcCH-HHHHHHHHHCCCCCeeeeeeeccccCCcHH
No 469
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.66 E-value=1.8e+02 Score=20.15 Aligned_cols=109 Identities=15% Similarity=0.099 Sum_probs=70.0
Q ss_pred chHHHHhhccCCCcHHHHHHH-----HHHHHhcCChhHHHHHhhcCCC----CChhHHHH-H--HHHHhccCChHHHHHH
Q 045555 2 GFALEIFGNMKNKDVISWTTI-----VSGYINRGQVDIARQYFAQMPE----RDYVLWTA-M--IDGYLRVNRFREALTL 69 (175)
Q Consensus 2 ~~A~~~~~~m~~~~~~~~~~l-----i~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~-l--i~~~~~~~~~~~a~~~ 69 (175)
++|+.-|.++.+.+.-.|-.| .....+.|+...|...|.++.. |-..--.. | .-.+.-.|.++.+...
T Consensus 75 d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~sr 154 (221)
T COG4649 75 DDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSR 154 (221)
T ss_pred hHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHH
Confidence 467777777776444444443 3346788999999999999875 21111111 1 1135567888888888
Q ss_pred HHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 70 FREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 70 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
.+.+-..+-.-. ...-.+|--+--+.|++.+|.+.|..+..
T Consensus 155 vepLa~d~n~mR--------------~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 155 VEPLAGDGNPMR--------------HSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hhhccCCCChhH--------------HHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 777765542111 11224566666789999999999999855
No 470
>cd08333 DED_Caspase_8_repeat1 Death effector domain, repeat 1, of Caspase-8. Death effector domain (DED) found in caspase-8 (CASP8, FLICE), repeat 1. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-8 is an initiator of death receptor mediated apoptosis. Together with FADD, caspase-10, and the pseudo-caspase c-FLIP, it forms the death-inducing signaling complex (DISC), whose formation is triggered by the activation of type 1 tumor necrosis factor (TNF) receptors such as Fas, TNF receptor 1, and TRAIL receptor. Caspase-8 also plays many important non-apoptotic functions including roles in embryonic development, cell adhesion and motility, immune cell proliferation and differentiation, T-cell activation, and NFkappaB signaling. It contains two N-terminal DED domains and a C-terminal caspase domain. DEDs comprise a subfamily of the
Probab=31.61 E-value=1.1e+02 Score=17.79 Aligned_cols=44 Identities=16% Similarity=0.395 Sum_probs=29.1
Q ss_pred CChHHHHHHHHHhHhCCC-CCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHH
Q 045555 61 NRFREALTLFREMQTSNI-RRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120 (175)
Q Consensus 61 ~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 120 (175)
.+...+.++|.+|.+.|. .|+-..+ +-+.+.+-++.+...++++
T Consensus 34 e~~~s~ldlf~~Lek~~~L~~~nl~~----------------L~elL~~I~R~DLl~~~l~ 78 (82)
T cd08333 34 ENIKDALALFQALQEKGLLEEGNLSF----------------LKELLYRIGRIDLLTSHLG 78 (82)
T ss_pred hccCCHHHHHHHHHHcCCCCcchHHH----------------HHHHHHHcCHHHHHHHHhc
Confidence 346778999999999884 4543333 6666667777666655543
No 471
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=31.28 E-value=95 Score=23.41 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=18.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhh
Q 045555 101 ALIDMYCKCGDVEKAQRVFWKM 122 (175)
Q Consensus 101 ~li~~~~~~~~~~~a~~~~~~~ 122 (175)
.+++.|.+.|.+++|.++..-.
T Consensus 111 ~Lm~~ci~~g~y~eALel~~~~ 132 (338)
T PF04124_consen 111 QLMDTCIRNGNYSEALELSAHV 132 (338)
T ss_pred HHHHHHHhcccHhhHHHHHHHH
Confidence 6788888888888888887776
No 472
>PRK09857 putative transposase; Provisional
Probab=31.27 E-value=1.3e+02 Score=22.31 Aligned_cols=82 Identities=9% Similarity=0.074 Sum_probs=0.0
Q ss_pred CchHHHHhhccCCCcHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCC
Q 045555 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 77 (175)
Q Consensus 1 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 77 (175)
+++...++.....++.. +..+++...+.++.++..++++.+.+ +......++..-+.+.|.-+++.++..+|+..|
T Consensus 192 ~~~l~~ll~~~~~~~~~-~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g 270 (292)
T PRK09857 192 VEQMACLLSSGYANDRQ-IKGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESG 270 (292)
T ss_pred HHHHHHHHHhccCCHHH-HHHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q ss_pred CCCChH
Q 045555 78 IRRDEF 83 (175)
Q Consensus 78 ~~p~~~ 83 (175)
+.++..
T Consensus 271 ~~~~~I 276 (292)
T PRK09857 271 VPLADI 276 (292)
T ss_pred CCHHHH
No 473
>cd08338 DED_PEA15 Death Effector Domain of Astrocyte phosphoprotein PEA-15. Death Effector Domain (DED) similar to that found in PEA-15 (Astrocyte phosphoprotein PEA-15). PEA-15 is a multifunctional phosphoprotein that modulates signaling pathways, like the ERK MAP kinase cascade by binding to ERK and changing its subcellular localization. It has been implicated in apoptosis, cell proliferation, and glucose metabolism. It does not possess enzymatic activity and mainly acts as an adaptor protein. PEA-15 contains an N-terminal DED domain and a C-terminal disordered region. DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and they can
Probab=30.76 E-value=1.2e+02 Score=17.78 Aligned_cols=43 Identities=7% Similarity=0.127 Sum_probs=28.8
Q ss_pred CChHHHHHHHHHhHhCCC-CCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHH
Q 045555 61 NRFREALTLFREMQTSNI-RRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119 (175)
Q Consensus 61 ~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 119 (175)
.+...+.++|..|.+.|. .|+-..+ +-+.+.+.++.+....+.
T Consensus 36 e~~~s~ldlf~~Lek~~~L~~dnl~~----------------L~elL~~i~R~DLl~~i~ 79 (84)
T cd08338 36 EEITSGRDWFSFLEKHDKLSQDNLSY----------------IEHVFEISRRPDLLTMVV 79 (84)
T ss_pred hccCCHHHHHHHHHHcCCCCCchHHH----------------HHHHHHHcCHHHHHHHHH
Confidence 456778899999999884 5543333 666666666666655443
No 474
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=30.23 E-value=2.3e+02 Score=20.94 Aligned_cols=53 Identities=19% Similarity=0.338 Sum_probs=38.3
Q ss_pred HHHHHHhcCChhHHHHHhhcCCC--CChhHHHHHHHHHhccCChHHHHHHHHHhHhC
Q 045555 22 IVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALTLFREMQTS 76 (175)
Q Consensus 22 li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (175)
...+..+.|+|+...+......+ ++...|.++... +.++++++....++....
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~ 58 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNEDSPEYSFYRALLAL--RQGDYDEAKKYIEKARQL 58 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCCChhHHHHHHHHHH--hCccHHHHHHHHHHHHHH
Confidence 35667789999998888777776 344445555433 888999888888887664
No 475
>PF14518 Haem_oxygenas_2: Iron-containing redox enzyme; PDB: 3BJD_B.
Probab=30.06 E-value=1.3e+02 Score=18.01 Aligned_cols=39 Identities=13% Similarity=0.115 Sum_probs=20.0
Q ss_pred HHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhcC
Q 045555 103 IDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISG 141 (175)
Q Consensus 103 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 141 (175)
...+.....+..+.-.+-..-......|..+++++-+.|
T Consensus 54 ~~~~~~~~~~~~~lG~~~~~E~~~~~~~~~~~~~l~r~g 92 (106)
T PF14518_consen 54 LALCLHRSHYPEALGALLATESSVPQIYRRLIKGLRRLG 92 (106)
T ss_dssp HHH--H-SSTHHHHHHHHHHHTHHHHHHHHHHHHHHHTT
T ss_pred HHhcccchhHHHHHHHHHHHhhcChHHHHHHHHHHHHcC
Confidence 333334455566555555333334555777777777666
No 476
>PF14744 WASH-7_mid: WASH complex subunit 7
Probab=30.05 E-value=51 Score=24.99 Aligned_cols=28 Identities=11% Similarity=0.121 Sum_probs=24.4
Q ss_pred ChhHHHHHHHHHHHCCCCCcHHHHHHHH
Q 045555 142 HGDTALDMFSQMLRASIRLDEVTYVGVL 169 (175)
Q Consensus 142 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll 169 (175)
.++.|.++.+++.+.|+.||..||--.+
T Consensus 281 p~erAekf~k~irkLG~~~dG~sylD~F 308 (350)
T PF14744_consen 281 PYERAEKFNKGIRKLGLSDDGQSYLDQF 308 (350)
T ss_pred CHHHHHHHHHHHHHcCCCCCcchHHHHH
Confidence 6789999999999999999999886544
No 477
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.85 E-value=2.6e+02 Score=21.59 Aligned_cols=108 Identities=13% Similarity=0.084 Sum_probs=60.2
Q ss_pred CChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHH----HHH
Q 045555 30 GQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVG----IAL 102 (175)
Q Consensus 30 ~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~----~~l 102 (175)
|+..+|-..++++.. | |...+.--=.+|...|+...-...++++.-. .++|...| ...
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~---------------wn~dlp~~sYv~Gmy 181 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK---------------WNADLPCYSYVHGMY 181 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc---------------cCCCCcHHHHHHHHH
Confidence 444444444444443 2 4455555555566666665555555555432 12232222 233
Q ss_pred HHHHHhcCCHHHHHHHHHhhcCC---ChhhHHHHHHHHHhcCChhHHHHHHHH
Q 045555 103 IDMYCKCGDVEKAQRVFWKMLRK---DKFTWTAMIVGLAISGHGDTALDMFSQ 152 (175)
Q Consensus 103 i~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~ 152 (175)
.-++..+|-+++|++.-++..+- |...-.+....+-..|+..++.+...+
T Consensus 182 aFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 182 AFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 34456888899998888887543 333334455556677888888777554
No 478
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=29.62 E-value=3.9e+02 Score=23.44 Aligned_cols=59 Identities=14% Similarity=0.166 Sum_probs=37.7
Q ss_pred HHHHHHHH-HHhcCChhHHHHHhhcCCC--------CChhHHHHHHHHHhccCChHHHHHHHHHhHhC
Q 045555 18 SWTTIVSG-YINRGQVDIARQYFAQMPE--------RDYVLWTAMIDGYLRVNRFREALTLFREMQTS 76 (175)
Q Consensus 18 ~~~~li~~-~~~~~~~~~a~~~~~~m~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (175)
.|+++-.. ....|+++.|..+-+...+ ...+.++++..+..-.|+++.|..+..+..+.
T Consensus 459 e~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 459 EFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 34444333 2346777777766654332 35566777777777888888888877776664
No 479
>PF11084 DUF2621: Protein of unknown function (DUF2621); InterPro: IPR020203 This entry represents a group of uncharacterised proteins.
Probab=29.44 E-value=1.6e+02 Score=18.93 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=20.6
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCC
Q 045555 46 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81 (175)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 81 (175)
+.++-...|.+|..+---..=.-+...+.+.++..+
T Consensus 100 ~~it~d~iIrGYI~ATPKRDhkfL~k~L~~~~ID~~ 135 (141)
T PF11084_consen 100 SEITRDLIIRGYILATPKRDHKFLRKKLKEKNIDYT 135 (141)
T ss_pred ccccHHHHHhhhhhcCCchhHHHHHHHHHHcCCCch
Confidence 445566777777776554444445555555555443
No 480
>KOG4414 consensus COP9 signalosome, subunit CSN8 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.01 E-value=1.7e+02 Score=19.25 Aligned_cols=29 Identities=14% Similarity=0.176 Sum_probs=24.8
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 045555 94 NDIFVGIALIDMYCKCGDVEKAQRVFWKM 122 (175)
Q Consensus 94 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 122 (175)
++...|...+.+|.-.++.+.|.-+++.+
T Consensus 37 ~~dw~Ya~~L~~Yf~~dD~dnARfLWKRI 65 (197)
T KOG4414|consen 37 HDDWPYAIHLAGYFLHDDCDNARFLWKRI 65 (197)
T ss_pred CCcchHHHHHHHHHHhccchhHHHHHHhC
Confidence 44456678999999999999999999998
No 481
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=28.91 E-value=1.1e+02 Score=23.42 Aligned_cols=31 Identities=10% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHhCCCCC
Q 045555 50 WTAMIDGYLRVNRFREALTLFREMQTSNIRR 80 (175)
Q Consensus 50 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 80 (175)
|-.+.......|.+++++.+|++....|..|
T Consensus 143 WIC~Arl~~~~~~~e~vi~iyEeAi~agAqP 173 (353)
T PF15297_consen 143 WICLARLEPRTGPIEDVIAIYEEAILAGAQP 173 (353)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHcCCCh
No 482
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=28.73 E-value=1.1e+02 Score=21.00 Aligned_cols=11 Identities=18% Similarity=0.314 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 045555 16 VISWTTIVSGY 26 (175)
Q Consensus 16 ~~~~~~li~~~ 26 (175)
+.+...++..|
T Consensus 74 ~h~va~lLK~f 84 (199)
T cd04390 74 VHTVASLLKLY 84 (199)
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 483
>cd08775 DED_Caspase-like_repeat2 Death effector domain, repeat 2, of initator caspase-like proteins. Death Effector Domain (DED), second repeat, found in initator caspase-like proteins like caspase-8, -10 and c-FLIP. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-8 and -10 are the initiators of death receptor mediated apoptosis. Together with FADD and the pseudo-caspase c-FLIP, they form the death-inducing signaling complex (DISC), whose formation is triggered by the activation of type 1 tumor necrosis factor (TNF) receptors such as Fas, TNF receptor 1, and TRAIL receptor. Caspase-8 and -10 also play important functions in cell adhesion and motility. c-FLIP is a catalytically inactive homolog of the initator procaspases-8 and -10. It negatively influences apoptotic signaling by interfering with the efficient formation of DISC.
Probab=28.66 E-value=1.3e+02 Score=17.50 Aligned_cols=39 Identities=13% Similarity=0.073 Sum_probs=25.4
Q ss_pred CChHHHHHHHHHhHhCCC-CCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHH
Q 045555 61 NRFREALTLFREMQTSNI-RRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKA 115 (175)
Q Consensus 61 ~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a 115 (175)
.+...+.++|.+|.+.|. .|+-..+ +-+.+.+-++.+..
T Consensus 36 e~~~s~ldlf~~Lek~~lL~~~nl~~----------------L~elL~~I~R~dLl 75 (81)
T cd08775 36 DDDMNFLDIVIEMENRVLLGPGKVDI----------------LKRMLRQLRRKDLL 75 (81)
T ss_pred cccCCHHHHHHHHHHcCCCCCccHHH----------------HHHHHHHcCHHHHH
Confidence 345668999999999984 5543333 55555566655554
No 484
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=28.05 E-value=2.4e+02 Score=25.02 Aligned_cols=53 Identities=13% Similarity=0.061 Sum_probs=37.7
Q ss_pred ccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 59 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
....+.++.++|..|...|+.+....| |-..-..+.+.+.+.+|..+|..=.+
T Consensus 90 ~~e~~~d~~d~f~~m~~kgIg~~lalf-------------Ye~~a~~lE~k~~~keA~~v~q~Giq 142 (974)
T KOG1166|consen 90 LREELQDAEDFFSYLENKGIGTTLALF-------------YEAYAKHLERKEYFKEAKEVFQLGIQ 142 (974)
T ss_pred HHHHHhhHHHHHHHHHhccccchhHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678888888888888876655444 45666677777778888888876643
No 485
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=28.00 E-value=2e+02 Score=19.69 Aligned_cols=50 Identities=4% Similarity=0.007 Sum_probs=23.1
Q ss_pred HhhcCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHh
Q 045555 120 WKMLRK--DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLS 170 (175)
Q Consensus 120 ~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 170 (175)
+++.+| ....|..++.+... .+.++..+.++++.+.=-.+|..|...|+.
T Consensus 84 ReLPePLi~~~~y~~~~~~~~~-~~~~~~~~~l~~li~~LP~~n~~~L~~L~~ 135 (195)
T cd04384 84 RELPNPLLTYQLYEKFSEAVSA-ASDEERLEKIHDVIQQLPPPHYRTLEFLMR 135 (195)
T ss_pred HhCCCccCCHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 444444 44556666655433 333344444444444333344445444443
No 486
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=27.91 E-value=77 Score=14.81 Aligned_cols=24 Identities=8% Similarity=0.210 Sum_probs=17.8
Q ss_pred ChhHHHHHHHHHHHCCCCCcHHHHHH
Q 045555 142 HGDTALDMFSQMLRASIRLDEVTYVG 167 (175)
Q Consensus 142 ~~~~a~~~~~~m~~~g~~p~~~t~~~ 167 (175)
+++.|..+|++.+.- .|+..+|..
T Consensus 2 E~dRAR~IyeR~v~~--hp~~k~Wik 25 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--HPEVKNWIK 25 (32)
T ss_pred hHHHHHHHHHHHHHh--CCCchHHHH
Confidence 567888899888863 577777654
No 487
>KOG3154 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.72 E-value=1.8e+02 Score=20.63 Aligned_cols=58 Identities=14% Similarity=0.140 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhcCCCCCh--hHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 18 SWTTIVSGYINRGQVDIARQYFAQMPERDY--VLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
...++..++.-.|..++|..++...+--.. ..-.-|+..|+++.+.++..++=++.++
T Consensus 149 CvEAlaA~l~I~G~~e~A~~lL~~F~wG~~Fl~lN~~lLd~Ya~C~~s~ev~~~qn~~Le 208 (263)
T KOG3154|consen 149 CVEALAACLYICGFPEEARELLDKFKWGHAFLELNKDLLDEYAKCASSAEVVEVQNEFLE 208 (263)
T ss_pred HHHHHHhHeeeecChhHHHHHHhcCcchHHHHHHhHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 345777778889999999999999885422 2345789999999999988887766655
No 488
>cd08792 DED_Caspase_8_10_repeat1 Death effector domain, repeat 1, of initator caspases 8 and 10. Death Effector Domain (DED) found in caspase-8 and caspase-10, repeat 1. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-8 and -10 are the initiators of death receptor mediated apoptosis, and they play partially redundant roles. Together with FADD and the pseudo-caspase c-FLIP, they form the death-inducing signaling complex (DISC), whose formation is triggered by the activation of type 1 tumor necrosis factor (TNF) receptors such as Fas, TNF receptor 1, and TRAIL receptor. Caspase-8 and -10 also play important functions in cell adhesion and motility. They contain two N-terminal DED domains and a C-terminal caspase domain. DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains foun
Probab=27.59 E-value=1.3e+02 Score=17.21 Aligned_cols=38 Identities=8% Similarity=0.223 Sum_probs=24.9
Q ss_pred ChHHHHHHHHHhHhCCC-CCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHH
Q 045555 62 RFREALTLFREMQTSNI-RRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKA 115 (175)
Q Consensus 62 ~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a 115 (175)
+...+.++|.++.+.|. .++-..+ +-+.+.+-++.+.+
T Consensus 35 ~~~s~ldlf~~Le~~~~l~~dnl~~----------------L~elL~~I~R~DLl 73 (77)
T cd08792 35 TVSSGKDLFLQLEEKGLLEVEDLFF----------------LAELLYRINRHDLL 73 (77)
T ss_pred ccCCHHHHHHHHHHcCCCCcchHHH----------------HHHHHHHcCHHHHH
Confidence 45578999999999884 4443333 56666666665554
No 489
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=27.57 E-value=1.8e+02 Score=18.90 Aligned_cols=43 Identities=12% Similarity=0.031 Sum_probs=29.3
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHH
Q 045555 127 KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVL 169 (175)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 169 (175)
+.--..++..+..+++...|.++++++.+.+..-+..|----|
T Consensus 20 T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L 62 (145)
T COG0735 20 TPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTL 62 (145)
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHH
Confidence 3345567777777777788888888888876666555544333
No 490
>PF08771 Rapamycin_bind: Rapamycin binding domain; InterPro: IPR009076 Rapamycin and FK506 are potent immunosuppressive agents that bind to the FK506-binding protein (FKBP12), inhibiting its peptidyl-prolyl isomerase activity. The rapamycin-FKBP12 complex can then bind to and inhibit the FKBP12-rapamycin-associated protein (FRAP) in humans and RAFT1 in rats, causing cell-cycle arrest []. The FK506-FKBP12 complex cannot bind FRAP, but can bind to and inhibit calcineurin. Rapamycin is able to bind to two proteins, FKBP12 and FRAP, by simultaneously occupying two hydrophobic binding pockets, thereby linking these two proteins together to form a dimer []. The structure of the FKBP12-rapamycin-binding domain of FRAP consists of a core bundle of four helices arranged up-and-down in a left-handed twist. FRAP has been shown to interact in vitro with CLIP-170, a protein involved in microtubule organisation and function []. FRAP is thought to act as a kinase to phosphorylate CLIP-170, thereby regulating its binding to microtubules. FRAP is also thought to cooperate with p85/p110 phosphatidylinositol 3-kinase (PI3K) to induce the activation of the serine/threonine kinase p70 S6 kinase (p70S6K), which in turn phosphorylates the 40S ribosomal protein S6, thereby altering the translation of ribosomal proteins and translation elongation factors [].; GO: 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 2NPU_A 2RSE_B 4FAP_B 1AUE_A 2GAQ_A 1FAP_B 2FAP_B 3FAP_B 1NSG_B.
Probab=27.44 E-value=1.5e+02 Score=17.94 Aligned_cols=21 Identities=10% Similarity=0.287 Sum_probs=14.1
Q ss_pred HHHhccCChHHHHHHHHHhHh
Q 045555 55 DGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 55 ~~~~~~~~~~~a~~~~~~m~~ 75 (175)
..|...++.+...++++.+.+
T Consensus 22 ~~y~~~~n~~~m~~~L~pLh~ 42 (100)
T PF08771_consen 22 RLYFGENNVEKMFKILEPLHE 42 (100)
T ss_dssp HHHHTTT-HHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHH
Confidence 345677888888887777655
No 491
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=27.41 E-value=1.9e+02 Score=19.64 Aligned_cols=8 Identities=13% Similarity=0.260 Sum_probs=2.9
Q ss_pred CCCCChhH
Q 045555 42 MPERDYVL 49 (175)
Q Consensus 42 m~~~~~~~ 49 (175)
++.++..+
T Consensus 117 LP~~n~~~ 124 (186)
T cd04407 117 LPTANHNT 124 (186)
T ss_pred CCHHHHHH
Confidence 33333333
No 492
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=27.27 E-value=3.4e+02 Score=22.09 Aligned_cols=64 Identities=9% Similarity=0.032 Sum_probs=42.6
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHhhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHHhHhCCCC
Q 045555 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPERD-YVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79 (175)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 79 (175)
+.+..|..+++.+ +.-+.+.-.++++++.. . ...+..+++++...|-......+.+.+....+.
T Consensus 308 ~~~~~f~~lv~~l-R~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~ 372 (574)
T smart00638 308 PAAAKFLRLVRLL-RTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKIT 372 (574)
T ss_pred chHHHHHHHHHHH-HhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 4556677777766 44555777777777665 3 567888888888888776666655555554443
No 493
>PRK02287 hypothetical protein; Provisional
Probab=27.08 E-value=2.1e+02 Score=19.45 Aligned_cols=59 Identities=14% Similarity=0.107 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhhcCCCC--ChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 17 ISWTTIVSGYINRGQVDIARQYFAQMPER--DYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
.+.-++..++.-.|..++|.++.+...-. -...=..++..|.++.+.++..++-++...
T Consensus 108 s~vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~~q~~~~~ 168 (171)
T PRK02287 108 SSVEALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPLEAYARAKDSEEIVEIQKEYLG 168 (171)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 45678888999999999999999988743 233345789999999999999988777654
No 494
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=26.97 E-value=2.8e+02 Score=20.94 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=22.8
Q ss_pred HHHHHHhccCChHHHHHHHHHhHhCC
Q 045555 52 AMIDGYLRVNRFREALTLFREMQTSN 77 (175)
Q Consensus 52 ~li~~~~~~~~~~~a~~~~~~m~~~~ 77 (175)
.|++.|.+.|.+++|+++....++..
T Consensus 111 ~Lm~~ci~~g~y~eALel~~~~~~L~ 136 (338)
T PF04124_consen 111 QLMDTCIRNGNYSEALELSAHVRRLQ 136 (338)
T ss_pred HHHHHHHhcccHhhHHHHHHHHHHHH
Confidence 67899999999999999998887653
No 495
>TIGR02531 yecD_yerC TrpR-related protein YerC/YecD. This model represents a protein subfamily found mostly in the Firmicutes (Bacillus and allies). This family is similar in sequence to the trp operon repressor TrpR described by TIGR01321, and represents a distinct clade within the broader family described by pfam01371. At least one species, Xylella fastidiosa, in the Proteobacteria, has a member of both this family and TIGR01321. Several genomes with a member of this family do not synthesize tryptophan, and members of this family should not be considered trp operon repressors without new evidence.
Probab=26.70 E-value=1.4e+02 Score=17.58 Aligned_cols=27 Identities=22% Similarity=0.440 Sum_probs=23.9
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 49 LWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
.|..|++++...++.+++..+++++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~l~t 30 (88)
T TIGR02531 4 LLDELFDAILTLKNREECYRFFDDIAT 30 (88)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC
Confidence 578899999999999999999999854
No 496
>cd08304 DD_superfamily The Death Domain Superfamily of protein-protein interaction domains. The Death Domain (DD) superfamily includes the DD, Pyrin, CARD (Caspase activation and recruitment domain) and DED (Death Effector Domain) families. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes. They are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways including those that impact innate immunity, inflammation, differentiation, and cancer.
Probab=26.62 E-value=68 Score=17.81 Aligned_cols=33 Identities=6% Similarity=-0.009 Sum_probs=22.7
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHhccCChHHH
Q 045555 34 IARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66 (175)
Q Consensus 34 ~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a 66 (175)
.|.+++..+.+....++..++.++...|..+-|
T Consensus 34 ~a~~ll~~l~~~~~~a~~~~~~vL~~~~~~~la 66 (69)
T cd08304 34 AANELLNILESQYNHTLQLLFALFEDLGLHNLA 66 (69)
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHcCCHhHH
Confidence 566777777665566777777777777766544
No 497
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=26.53 E-value=3e+02 Score=21.20 Aligned_cols=75 Identities=17% Similarity=0.209 Sum_probs=47.3
Q ss_pred HHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhh---cCC--C
Q 045555 52 AMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM---LRK--D 126 (175)
Q Consensus 52 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~---~~~--~ 126 (175)
-|.-+-.+.|+..+|.+.|+++.+.- | ..+.. .+...||+++....-+.++..++-+. ..| -
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~--p-l~t~l----------niheNLiEalLE~QAYADvqavLakYDdislPkSA 346 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEF--P-LLTML----------NIHENLLEALLELQAYADVQAVLAKYDDISLPKSA 346 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhc--c-HHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchH
Confidence 44555567799999999999998853 2 11111 12347888888888887777776554 333 3
Q ss_pred hhhHHH-HHHHHHh
Q 045555 127 KFTWTA-MIVGLAI 139 (175)
Q Consensus 127 ~~~~~~-li~~~~~ 139 (175)
..+|++ ++++-+-
T Consensus 347 ~icYTaALLK~RAV 360 (556)
T KOG3807|consen 347 AICYTAALLKTRAV 360 (556)
T ss_pred HHHHHHHHHHHHHH
Confidence 456654 4444433
No 498
>TIGR02328 conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown.
Probab=26.34 E-value=59 Score=20.30 Aligned_cols=17 Identities=12% Similarity=0.192 Sum_probs=14.1
Q ss_pred HHHHHHHHHCCCCCcHH
Q 045555 147 LDMFSQMLRASIRLDEV 163 (175)
Q Consensus 147 ~~~~~~m~~~g~~p~~~ 163 (175)
..+.++|..+|.+||..
T Consensus 55 ~lv~~EM~~RGY~~~~~ 71 (120)
T TIGR02328 55 LLVMEEMATRGYHVSKQ 71 (120)
T ss_pred HHHHHHHHHcCCCCChh
Confidence 45678999999999874
No 499
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=26.15 E-value=4.2e+02 Score=22.72 Aligned_cols=114 Identities=7% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChhHHHHHhhcCC------CCChhHHHHHHHHHhccCC---hHHHHHHHHHhHhCCCCCChHHHHHhhh-
Q 045555 21 TIVSGYINRGQVDIARQYFAQMP------ERDYVLWTAMIDGYLRVNR---FREALTLFREMQTSNIRRDEFTTVRILT- 90 (175)
Q Consensus 21 ~li~~~~~~~~~~~a~~~~~~m~------~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~~~~~~~l~~- 90 (175)
+++.+|...|++..+.++++... +.-...+|..|+...+.|. .+.-...-+.+.++.+.-|..||..+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Q ss_pred ccCcc-hhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHH
Q 045555 91 TFNND-IFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIV 135 (175)
Q Consensus 91 ~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~ 135 (175)
..+|. .....-+++.|.+ .......++|-....-++.-.+.++.
T Consensus 113 sln~t~~~l~~pvl~~~i~-~s~ngv~di~~~~~v~s~~ev~limd 157 (1117)
T COG5108 113 SLNPTQRQLGLPVLHELIH-RSANGVIDILMHESVFSPEEVKLIMD 157 (1117)
T ss_pred hcChHhHHhccHHHHHHHH-hhhhhHHHHHhhhccCCHHHHHHHHH
No 500
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=26.01 E-value=1.8e+02 Score=22.45 Aligned_cols=38 Identities=16% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCcHH--HHHHHHhhh
Q 045555 134 IVGLAISGHGDTALDMFSQMLRASIRLDEV--TYVGVLSAC 172 (175)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~~ll~~~ 172 (175)
+..+.+.+++..|.++|+++..+ ++++.. .+..+..||
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y 177 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGY 177 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHH
Done!