Query 045555
Match_columns 175
No_of_seqs 155 out of 1350
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 05:08:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045555.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045555hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 9.6E-34 3.3E-38 216.9 15.8 171 4-174 9-222 (501)
2 4g26_A Pentatricopeptide repea 100.0 6.6E-32 2.3E-36 206.8 16.4 142 34-175 8-188 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 1.8E-23 6.2E-28 167.3 10.2 114 47-174 127-248 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.9 1.2E-22 3.9E-27 162.8 7.4 127 16-161 127-265 (1134)
5 2xpi_A Anaphase-promoting comp 99.7 8.1E-17 2.8E-21 125.0 14.7 145 15-174 372-528 (597)
6 2xpi_A Anaphase-promoting comp 99.7 3.6E-16 1.2E-20 121.3 14.8 171 2-174 289-487 (597)
7 1b89_A Protein (clathrin heavy 99.4 1.6E-13 5.6E-18 102.6 6.0 157 1-174 19-189 (449)
8 1w3b_A UDP-N-acetylglucosamine 99.4 7.7E-12 2.6E-16 92.3 14.3 153 3-156 187-368 (388)
9 1w3b_A UDP-N-acetylglucosamine 99.4 2.3E-11 7.7E-16 89.8 16.1 169 2-173 152-350 (388)
10 2ho1_A Type 4 fimbrial biogene 99.4 7.3E-11 2.5E-15 81.9 17.2 154 2-155 54-237 (252)
11 2vq2_A PILW, putative fimbrial 99.4 5.4E-11 1.8E-15 80.8 15.4 142 2-156 25-176 (225)
12 2y4t_A DNAJ homolog subfamily 99.4 1.9E-11 6.4E-16 91.7 14.0 159 2-164 43-246 (450)
13 3as5_A MAMA; tetratricopeptide 99.4 1.1E-10 3.6E-15 76.9 15.4 139 2-155 25-172 (186)
14 2y4t_A DNAJ homolog subfamily 99.3 5.5E-11 1.9E-15 89.1 15.2 157 2-162 160-362 (450)
15 3vtx_A MAMA; tetratricopeptide 99.3 1.6E-10 5.3E-15 76.7 15.8 146 15-162 4-174 (184)
16 3mkr_A Coatomer subunit epsilo 99.3 2.3E-10 8E-15 81.9 17.1 150 2-155 82-263 (291)
17 2fo7_A Synthetic consensus TPR 99.3 1.5E-10 5.1E-15 72.1 13.8 125 17-156 2-132 (136)
18 2q7f_A YRRB protein; TPR, prot 99.3 1.2E-10 4E-15 80.2 14.3 153 2-155 40-221 (243)
19 2pl2_A Hypothetical conserved 99.3 2E-10 6.9E-15 78.6 15.0 152 2-170 22-193 (217)
20 4eqf_A PEX5-related protein; a 99.3 5.9E-11 2E-15 86.8 12.9 166 2-172 82-291 (365)
21 1fch_A Peroxisomal targeting s 99.3 5.4E-10 1.8E-14 81.5 17.3 168 2-171 81-294 (368)
22 2q7f_A YRRB protein; TPR, prot 99.3 2.4E-10 8.2E-15 78.6 14.1 122 2-124 74-221 (243)
23 2pl2_A Hypothetical conserved 99.3 4.7E-10 1.6E-14 76.8 14.7 141 14-171 3-160 (217)
24 2vq2_A PILW, putative fimbrial 99.2 6.3E-10 2.1E-14 75.5 15.2 152 2-170 59-223 (225)
25 3as5_A MAMA; tetratricopeptide 99.2 3.3E-09 1.1E-13 69.6 18.1 140 16-171 8-153 (186)
26 3mkr_A Coatomer subunit epsilo 99.2 1.2E-09 4.2E-14 78.1 16.9 169 2-171 16-209 (291)
27 3cv0_A Peroxisome targeting si 99.2 1.3E-09 4.5E-14 78.0 16.8 169 2-171 38-249 (327)
28 4eqf_A PEX5-related protein; a 99.2 2.5E-10 8.7E-15 83.4 13.2 155 2-156 116-310 (365)
29 3hym_B Cell division cycle pro 99.2 8E-10 2.7E-14 79.2 15.2 58 97-154 237-297 (330)
30 1hh8_A P67PHOX, NCF-2, neutrop 99.2 3.4E-09 1.2E-13 71.7 17.5 127 16-157 6-151 (213)
31 3uq3_A Heat shock protein STI1 99.2 4.4E-10 1.5E-14 77.8 13.2 155 2-171 55-255 (258)
32 3uq3_A Heat shock protein STI1 99.2 9.2E-10 3.2E-14 76.2 14.4 167 2-171 22-216 (258)
33 4gyw_A UDP-N-acetylglucosamine 99.2 2.8E-10 9.4E-15 90.9 12.9 137 3-154 27-172 (723)
34 3hym_B Cell division cycle pro 99.2 9.6E-10 3.3E-14 78.8 14.3 153 3-156 40-222 (330)
35 1xnf_A Lipoprotein NLPI; TPR, 99.2 7.1E-10 2.4E-14 77.6 12.6 140 2-156 22-173 (275)
36 2ho1_A Type 4 fimbrial biogene 99.2 2.8E-09 9.7E-14 73.8 15.2 139 16-155 37-203 (252)
37 1b89_A Protein (clathrin heavy 99.2 1.7E-10 5.8E-15 86.4 9.3 104 15-146 93-196 (449)
38 4gyw_A UDP-N-acetylglucosamine 99.2 2.1E-09 7.3E-14 85.8 15.9 139 15-170 8-153 (723)
39 1fch_A Peroxisomal targeting s 99.2 5.1E-10 1.7E-14 81.6 11.6 137 2-153 198-356 (368)
40 3cv0_A Peroxisome targeting si 99.1 5.2E-10 1.8E-14 80.1 10.9 138 2-154 155-313 (327)
41 3ieg_A DNAJ homolog subfamily 99.1 3.7E-09 1.3E-13 76.4 15.0 155 2-156 20-217 (359)
42 2gw1_A Mitochondrial precursor 99.1 2.4E-09 8.2E-14 81.3 14.4 76 2-77 23-103 (514)
43 4abn_A Tetratricopeptide repea 99.1 7.7E-10 2.7E-14 84.3 11.6 140 2-156 120-287 (474)
44 3fp2_A TPR repeat-containing p 99.1 4.1E-09 1.4E-13 80.5 14.9 139 2-155 219-372 (537)
45 3fp2_A TPR repeat-containing p 99.1 2.3E-09 7.9E-14 81.9 13.0 140 2-156 260-407 (537)
46 2ond_A Cleavage stimulation fa 99.1 9E-09 3.1E-13 73.9 15.1 153 2-155 81-269 (308)
47 1xnf_A Lipoprotein NLPI; TPR, 99.1 1.7E-08 5.8E-13 70.5 16.1 152 2-156 60-244 (275)
48 3u4t_A TPR repeat-containing p 99.1 3.5E-09 1.2E-13 74.1 12.3 140 2-156 20-171 (272)
49 2vsy_A XCC0866; transferase, g 99.1 6.7E-09 2.3E-13 80.6 15.0 142 1-157 5-158 (568)
50 3ieg_A DNAJ homolog subfamily 99.0 8.1E-09 2.8E-13 74.6 13.7 122 2-124 54-216 (359)
51 2gw1_A Mitochondrial precursor 99.0 4.5E-09 1.5E-13 79.7 12.7 74 3-76 288-367 (514)
52 4i17_A Hypothetical protein; T 99.0 4.1E-08 1.4E-12 67.2 16.3 131 14-161 5-149 (228)
53 3edt_B KLC 2, kinesin light ch 99.0 2.4E-09 8.3E-14 74.8 10.0 145 2-156 25-198 (283)
54 4i17_A Hypothetical protein; T 99.0 1.5E-08 5E-13 69.4 12.9 157 2-168 24-219 (228)
55 2r5s_A Uncharacterized protein 99.0 3.5E-08 1.2E-12 65.1 13.8 137 3-155 24-172 (176)
56 3u4t_A TPR repeat-containing p 98.9 3.2E-08 1.1E-12 69.2 13.1 129 16-156 3-137 (272)
57 4abn_A Tetratricopeptide repea 98.9 1.2E-08 4.2E-13 77.7 11.7 150 3-170 86-266 (474)
58 2h6f_A Protein farnesyltransfe 98.9 2E-08 7E-13 74.5 12.5 139 2-155 114-268 (382)
59 1ouv_A Conserved hypothetical 98.9 1.2E-07 4.3E-12 66.5 16.0 152 2-156 23-215 (273)
60 3nf1_A KLC 1, kinesin light ch 98.9 6.6E-09 2.3E-13 73.7 8.9 131 15-155 110-306 (311)
61 2ond_A Cleavage stimulation fa 98.9 3.4E-08 1.2E-12 70.9 12.3 122 2-124 116-269 (308)
62 1p5q_A FKBP52, FK506-binding p 98.9 8E-09 2.7E-13 75.4 8.8 125 15-154 146-292 (336)
63 2h6f_A Protein farnesyltransfe 98.9 5.7E-08 2E-12 72.1 13.3 127 15-156 96-229 (382)
64 4ga2_A E3 SUMO-protein ligase 98.9 3.1E-08 1.1E-12 63.8 10.3 124 22-162 3-133 (150)
65 1ouv_A Conserved hypothetical 98.9 3.2E-07 1.1E-11 64.4 16.3 126 15-157 5-144 (273)
66 3qky_A Outer membrane assembly 98.9 1.9E-08 6.5E-13 70.3 9.7 154 2-156 32-224 (261)
67 2fo7_A Synthetic consensus TPR 98.9 3.9E-08 1.3E-12 60.8 10.2 108 2-124 18-131 (136)
68 3edt_B KLC 2, kinesin light ch 98.9 1.4E-08 4.7E-13 71.0 8.9 131 15-155 84-280 (283)
69 1a17_A Serine/threonine protei 98.9 1.3E-07 4.5E-12 61.0 12.9 126 15-155 12-145 (166)
70 4ga2_A E3 SUMO-protein ligase 98.8 2.3E-08 8E-13 64.4 8.9 126 2-142 14-149 (150)
71 3qou_A Protein YBBN; thioredox 98.8 1.8E-07 6.3E-12 66.6 13.9 139 14-154 115-282 (287)
72 3urz_A Uncharacterized protein 98.8 8.1E-08 2.8E-12 65.1 11.3 150 2-168 21-196 (208)
73 3gyz_A Chaperone protein IPGC; 98.8 1.6E-07 5.5E-12 60.7 11.9 125 18-163 11-138 (151)
74 4gco_A Protein STI-1; structur 98.8 4.9E-07 1.7E-11 56.4 13.6 102 48-166 14-118 (126)
75 2pzi_A Probable serine/threoni 98.8 1.7E-08 5.9E-13 80.2 8.2 138 2-155 408-562 (681)
76 1na0_A Designed protein CTPR3; 98.8 2.5E-07 8.6E-12 56.4 12.0 95 47-156 9-106 (125)
77 3rjv_A Putative SEL1 repeat pr 98.8 5.2E-07 1.8E-11 61.3 14.6 137 2-156 3-158 (212)
78 1hh8_A P67PHOX, NCF-2, neutrop 98.8 1.2E-07 4.2E-12 63.9 11.4 124 2-125 23-150 (213)
79 2lni_A Stress-induced-phosphop 98.8 3.6E-07 1.2E-11 56.5 12.1 93 15-122 15-110 (133)
80 2yhc_A BAMD, UPF0169 lipoprote 98.8 2E-07 6.7E-12 63.9 11.7 154 2-157 21-214 (225)
81 2vyi_A SGTA protein; chaperone 98.8 3.3E-07 1.1E-11 56.4 11.8 113 15-142 11-129 (131)
82 1qqe_A Vesicular transport pro 98.7 8.9E-08 3E-12 68.3 10.0 131 16-155 77-227 (292)
83 4gco_A Protein STI-1; structur 98.7 2.7E-07 9.1E-12 57.7 11.0 95 15-124 12-109 (126)
84 3nf1_A KLC 1, kinesin light ch 98.7 2.3E-07 7.8E-12 65.7 11.8 132 15-156 26-182 (311)
85 3gw4_A Uncharacterized protein 98.7 8.4E-08 2.9E-12 64.1 9.1 144 2-155 9-175 (203)
86 4gcn_A Protein STI-1; structur 98.7 4.9E-07 1.7E-11 56.4 11.8 104 48-168 9-122 (127)
87 1na0_A Designed protein CTPR3; 98.7 6.7E-07 2.3E-11 54.5 12.2 110 15-139 8-123 (125)
88 2ooe_A Cleavage stimulation fa 98.7 1.2E-06 4E-11 67.4 15.6 140 3-156 304-454 (530)
89 3qky_A Outer membrane assembly 98.7 3.4E-06 1.2E-10 58.7 16.4 131 14-156 13-177 (261)
90 3ulq_A Response regulator aspa 98.7 4.6E-07 1.6E-11 66.7 12.3 144 2-155 120-292 (383)
91 3upv_A Heat shock protein STI1 98.7 1.9E-06 6.5E-11 53.2 13.3 108 48-170 5-119 (126)
92 2e2e_A Formate-dependent nitri 98.7 8.2E-08 2.8E-12 63.1 7.3 115 27-156 21-144 (177)
93 3gyz_A Chaperone protein IPGC; 98.7 3.7E-07 1.3E-11 59.0 10.1 95 15-124 35-132 (151)
94 1xi4_A Clathrin heavy chain; a 98.7 3.7E-06 1.3E-10 71.0 18.1 142 3-153 1094-1247(1630)
95 3qou_A Protein YBBN; thioredox 98.6 5.2E-07 1.8E-11 64.2 11.5 109 34-157 104-249 (287)
96 2vgx_A Chaperone SYCD; alterna 98.6 2.6E-06 9E-11 54.5 13.7 96 46-156 20-118 (148)
97 2kck_A TPR repeat; tetratricop 98.6 1.3E-06 4.5E-11 52.2 11.5 96 46-156 5-106 (112)
98 2fbn_A 70 kDa peptidylprolyl i 98.6 1.3E-07 4.6E-12 63.3 7.7 128 15-157 37-187 (198)
99 3q15_A PSP28, response regulat 98.6 3.1E-07 1.1E-11 67.6 10.2 145 2-156 118-290 (378)
100 3mv2_B Coatomer subunit epsilo 98.6 2E-06 6.9E-11 61.8 13.7 141 4-155 85-239 (310)
101 4a1s_A PINS, partner of inscut 98.6 2.3E-07 8E-12 68.6 9.2 131 16-155 223-371 (411)
102 3ro3_A PINS homolog, G-protein 98.6 4.1E-07 1.4E-11 58.0 9.3 130 16-155 9-157 (164)
103 3mv2_B Coatomer subunit epsilo 98.6 7.1E-07 2.4E-11 64.2 11.2 141 2-162 117-286 (310)
104 1elr_A TPR2A-domain of HOP; HO 98.6 2.8E-06 9.7E-11 52.1 12.6 104 48-168 5-118 (131)
105 2xcb_A PCRH, regulatory protei 98.6 2.1E-06 7.1E-11 54.4 12.2 104 38-156 6-115 (142)
106 2vsy_A XCC0866; transferase, g 98.6 2.2E-06 7.6E-11 66.5 14.6 126 29-170 2-133 (568)
107 2e2e_A Formate-dependent nitri 98.6 5.8E-07 2E-11 59.0 9.8 108 2-124 27-143 (177)
108 2r5s_A Uncharacterized protein 98.6 2.8E-06 9.7E-11 55.8 13.1 137 18-170 8-152 (176)
109 3q49_B STIP1 homology and U bo 98.6 3.7E-06 1.3E-10 52.4 13.1 95 46-155 8-105 (137)
110 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 1.8E-07 6.3E-12 70.9 8.0 126 15-155 267-414 (457)
111 2lni_A Stress-induced-phosphop 98.6 2.5E-06 8.6E-11 52.6 11.9 96 46-156 15-113 (133)
112 3sf4_A G-protein-signaling mod 98.6 6.1E-07 2.1E-11 65.9 10.4 130 16-155 187-335 (406)
113 3ro2_A PINS homolog, G-protein 98.6 5.3E-07 1.8E-11 64.2 9.7 131 16-156 183-332 (338)
114 3sz7_A HSC70 cochaperone (SGT) 98.6 2.7E-06 9.2E-11 55.1 12.2 94 47-155 11-107 (164)
115 1qqe_A Vesicular transport pro 98.5 1.2E-06 4.3E-11 62.3 11.4 131 18-157 39-188 (292)
116 3rjv_A Putative SEL1 repeat pr 98.5 2.7E-06 9.3E-11 57.7 12.6 149 2-164 35-205 (212)
117 1elw_A TPR1-domain of HOP; HOP 98.5 7E-06 2.4E-10 49.3 13.3 95 47-156 4-101 (118)
118 3vtx_A MAMA; tetratricopeptide 98.5 1.3E-06 4.3E-11 57.6 10.3 111 2-127 22-172 (184)
119 2vyi_A SGTA protein; chaperone 98.5 1.1E-05 3.7E-10 49.3 13.9 107 46-169 11-121 (131)
120 3u3w_A Transcriptional activat 98.5 1.1E-06 3.7E-11 62.6 10.4 144 2-155 92-265 (293)
121 2ifu_A Gamma-SNAP; membrane fu 98.5 1.5E-06 5.1E-11 62.4 10.7 129 16-154 76-222 (307)
122 1elw_A TPR1-domain of HOP; HOP 98.5 6.1E-06 2.1E-10 49.6 12.1 96 15-125 3-101 (118)
123 3urz_A Uncharacterized protein 98.5 4.3E-06 1.5E-10 56.5 12.4 123 17-154 5-151 (208)
124 3u3w_A Transcriptional activat 98.5 1.6E-05 5.4E-10 56.5 15.9 127 19-155 78-224 (293)
125 2vgx_A Chaperone SYCD; alterna 98.5 2E-06 7E-11 55.1 10.2 95 15-124 20-117 (148)
126 3ulq_A Response regulator aspa 98.5 1.7E-06 5.9E-11 63.7 11.0 107 3-122 168-290 (383)
127 3upv_A Heat shock protein STI1 98.5 2.2E-06 7.4E-11 53.0 9.7 95 15-124 3-100 (126)
128 3ro2_A PINS homolog, G-protein 98.5 3.7E-07 1.2E-11 65.0 7.0 75 2-76 22-112 (338)
129 2xcb_A PCRH, regulatory protei 98.5 2.5E-06 8.5E-11 54.0 10.2 104 6-124 5-114 (142)
130 2ooe_A Cleavage stimulation fa 98.5 2.2E-06 7.5E-11 65.9 11.7 140 2-156 338-492 (530)
131 1elr_A TPR2A-domain of HOP; HO 98.5 1.8E-06 6.1E-11 53.0 9.2 111 16-136 4-121 (131)
132 2qfc_A PLCR protein; TPR, HTH, 98.5 3.4E-06 1.2E-10 60.0 11.8 128 18-154 117-264 (293)
133 2dba_A Smooth muscle cell asso 98.5 2.6E-05 8.7E-10 48.9 14.7 99 46-156 27-128 (148)
134 3sz7_A HSC70 cochaperone (SGT) 98.5 4E-06 1.4E-10 54.3 11.1 96 14-124 9-107 (164)
135 4gcn_A Protein STI-1; structur 98.4 7.6E-06 2.6E-10 50.9 11.8 105 16-130 8-119 (127)
136 4f3v_A ESX-1 secretion system 98.4 2.4E-05 8.2E-10 55.5 15.4 129 18-161 104-240 (282)
137 3q49_B STIP1 homology and U bo 98.4 3.7E-06 1.3E-10 52.4 10.3 96 14-124 7-105 (137)
138 1hxi_A PEX5, peroxisome target 98.4 3.2E-06 1.1E-10 52.2 9.8 93 49-156 19-114 (121)
139 2xm6_A Protein corresponding t 98.4 1.9E-05 6.4E-10 60.2 16.0 137 3-156 61-216 (490)
140 2yhc_A BAMD, UPF0169 lipoprote 98.4 6.2E-06 2.1E-10 56.3 11.9 130 15-156 3-176 (225)
141 2kck_A TPR repeat; tetratricop 98.4 1.2E-06 4.1E-11 52.4 7.4 97 15-124 5-105 (112)
142 2fbn_A 70 kDa peptidylprolyl i 98.4 2.9E-06 9.8E-11 56.7 9.8 135 20-156 8-151 (198)
143 2dba_A Smooth muscle cell asso 98.4 1.2E-05 4.1E-10 50.5 12.3 96 14-124 26-127 (148)
144 4a1s_A PINS, partner of inscut 98.4 7E-07 2.4E-11 66.0 7.2 131 15-155 125-291 (411)
145 2pzi_A Probable serine/threoni 98.4 6.1E-07 2.1E-11 71.3 7.0 125 2-142 450-583 (681)
146 2xm6_A Protein corresponding t 98.4 1.7E-05 5.7E-10 60.4 14.5 153 2-157 96-289 (490)
147 2ifu_A Gamma-SNAP; membrane fu 98.4 2.2E-06 7.5E-11 61.5 9.0 129 17-155 37-183 (307)
148 1a17_A Serine/threonine protei 98.4 2.1E-05 7.2E-10 50.3 12.7 95 47-156 13-110 (166)
149 3gw4_A Uncharacterized protein 98.4 1E-05 3.5E-10 53.7 11.4 120 27-155 3-135 (203)
150 2qfc_A PLCR protein; TPR, HTH, 98.3 1.8E-05 6.2E-10 56.1 13.2 130 17-155 76-224 (293)
151 3sf4_A G-protein-signaling mod 98.3 2.1E-06 7.3E-11 63.0 8.6 130 16-155 87-255 (406)
152 3q15_A PSP28, response regulat 98.3 6.6E-06 2.3E-10 60.5 10.9 130 16-155 222-364 (378)
153 4e6h_A MRNA 3'-END-processing 98.3 2.1E-05 7E-10 62.6 14.3 169 2-172 360-584 (679)
154 2xev_A YBGF; tetratricopeptide 98.3 4E-05 1.4E-09 47.1 13.1 95 50-156 5-105 (129)
155 1wao_1 Serine/threonine protei 98.3 1.8E-06 6.2E-11 65.9 7.7 118 19-151 9-134 (477)
156 3rkv_A Putative peptidylprolyl 98.3 3.2E-05 1.1E-09 49.8 12.5 117 48-169 12-138 (162)
157 2c2l_A CHIP, carboxy terminus 98.3 2.9E-05 9.8E-10 55.0 12.8 91 49-154 6-99 (281)
158 3k9i_A BH0479 protein; putativ 98.3 4.8E-06 1.6E-10 50.9 7.7 102 59-172 2-107 (117)
159 1hxi_A PEX5, peroxisome target 98.3 5.3E-06 1.8E-10 51.2 7.8 93 18-125 19-114 (121)
160 3n71_A Histone lysine methyltr 98.3 4E-06 1.4E-10 64.2 8.6 124 25-156 318-464 (490)
161 2if4_A ATFKBP42; FKBP-like, al 98.3 4E-06 1.4E-10 61.1 8.3 127 15-156 178-328 (338)
162 1ihg_A Cyclophilin 40; ppiase 98.2 1.5E-05 5.2E-10 58.8 10.9 118 16-148 223-362 (370)
163 4f3v_A ESX-1 secretion system 98.2 7.8E-05 2.7E-09 52.9 13.6 111 2-124 119-236 (282)
164 4g1t_A Interferon-induced prot 98.2 8.4E-05 2.9E-09 55.8 14.7 140 15-156 93-276 (472)
165 1hz4_A MALT regulatory protein 98.2 5.2E-05 1.8E-09 55.3 13.2 131 16-155 135-281 (373)
166 2xev_A YBGF; tetratricopeptide 98.1 2.6E-05 9E-10 47.9 9.1 94 19-124 5-104 (129)
167 2c2l_A CHIP, carboxy terminus 98.1 3.8E-05 1.3E-09 54.4 10.3 94 15-123 3-99 (281)
168 1p5q_A FKBP52, FK506-binding p 98.1 0.00011 3.8E-09 53.4 13.0 127 30-156 127-259 (336)
169 2hr2_A Hypothetical protein; a 98.1 0.00013 4.3E-09 47.3 11.5 113 49-165 13-145 (159)
170 4g1t_A Interferon-induced prot 98.1 0.00011 3.7E-09 55.2 13.0 139 15-155 208-400 (472)
171 3rkv_A Putative peptidylprolyl 98.1 4.6E-05 1.6E-09 49.1 9.5 95 15-124 10-125 (162)
172 1xi4_A Clathrin heavy chain; a 98.0 0.00023 7.8E-09 60.5 15.1 127 2-154 1151-1307(1630)
173 1wao_1 Serine/threonine protei 98.0 1.9E-05 6.4E-10 60.3 8.3 104 2-120 23-134 (477)
174 2hr2_A Hypothetical protein; a 98.0 3.8E-05 1.3E-09 49.8 8.1 96 16-124 11-130 (159)
175 3k9i_A BH0479 protein; putativ 98.0 1.9E-05 6.4E-10 48.2 6.1 82 28-124 2-89 (117)
176 3e4b_A ALGK; tetratricopeptide 98.0 0.00082 2.8E-08 50.8 15.9 139 2-158 196-353 (452)
177 1ihg_A Cyclophilin 40; ppiase 98.0 0.0002 6.8E-09 52.9 12.2 109 48-156 224-336 (370)
178 2l6j_A TPR repeat-containing p 98.0 1.1E-05 3.9E-10 48.2 4.6 90 47-151 4-102 (111)
179 3e4b_A ALGK; tetratricopeptide 97.9 0.00072 2.5E-08 51.1 15.1 128 15-157 140-281 (452)
180 2l6j_A TPR repeat-containing p 97.9 7.6E-06 2.6E-10 48.9 3.3 99 14-122 2-104 (111)
181 1hz4_A MALT regulatory protein 97.9 6.3E-05 2.1E-09 54.9 8.3 130 18-156 55-203 (373)
182 3dra_A Protein farnesyltransfe 97.9 0.00086 2.9E-08 48.2 13.9 140 2-156 127-287 (306)
183 4b4t_Q 26S proteasome regulato 97.9 0.00016 5.5E-09 53.7 10.4 125 18-155 57-203 (434)
184 3qww_A SET and MYND domain-con 97.8 0.00015 5E-09 54.8 9.6 99 59-168 310-426 (433)
185 2kat_A Uncharacterized protein 97.8 6.6E-05 2.3E-09 45.4 6.5 76 1-76 1-82 (115)
186 3qwp_A SET and MYND domain-con 97.8 0.0002 6.9E-09 53.9 10.3 107 52-168 292-415 (429)
187 2kat_A Uncharacterized protein 97.8 0.00029 1E-08 42.4 9.2 77 65-156 3-82 (115)
188 3n71_A Histone lysine methyltr 97.8 0.00015 5.2E-09 55.5 9.3 102 55-167 317-436 (490)
189 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00062 2.1E-08 51.6 12.4 123 32-156 250-380 (457)
190 1klx_A Cysteine rich protein B 97.8 0.00016 5.3E-09 45.6 7.7 112 29-159 8-129 (138)
191 3ro3_A PINS homolog, G-protein 97.7 0.00028 9.5E-09 44.4 8.3 98 48-155 10-117 (164)
192 3ma5_A Tetratricopeptide repea 97.7 0.00053 1.8E-08 40.4 8.9 62 46-122 6-67 (100)
193 2if4_A ATFKBP42; FKBP-like, al 97.7 0.00042 1.4E-08 50.4 10.0 105 47-155 179-292 (338)
194 3ma5_A Tetratricopeptide repea 97.7 0.00044 1.5E-08 40.8 8.3 76 95-170 6-85 (100)
195 1na3_A Designed protein CTPR2; 97.7 0.0011 3.6E-08 37.7 9.8 56 100-155 13-71 (91)
196 1na3_A Designed protein CTPR2; 97.6 0.00046 1.6E-08 39.3 7.8 63 15-77 8-73 (91)
197 1zu2_A Mitochondrial import re 97.6 0.00014 5E-09 47.0 5.6 100 58-174 13-136 (158)
198 1dce_A Protein (RAB geranylger 97.5 0.0021 7.3E-08 50.1 11.9 149 2-167 46-231 (567)
199 4b4t_Q 26S proteasome regulato 97.4 0.00045 1.5E-08 51.2 7.5 129 18-155 97-244 (434)
200 3qwp_A SET and MYND domain-con 97.4 0.001 3.5E-08 50.1 9.1 94 21-122 292-397 (429)
201 3qww_A SET and MYND domain-con 97.3 0.00068 2.3E-08 51.1 7.3 87 28-122 310-408 (433)
202 3dra_A Protein farnesyltransfe 97.3 0.0062 2.1E-07 43.7 11.6 140 2-156 50-215 (306)
203 1klx_A Cysteine rich protein B 97.2 0.0025 8.6E-08 39.9 8.2 105 2-125 12-126 (138)
204 2kc7_A BFR218_protein; tetratr 97.1 0.00096 3.3E-08 38.8 5.1 57 53-124 6-63 (99)
205 4e6h_A MRNA 3'-END-processing 97.1 0.016 5.4E-07 46.3 13.2 71 6-76 330-407 (679)
206 3q7a_A Farnesyltransferase alp 97.0 0.016 5.4E-07 42.4 11.6 32 125-156 300-331 (349)
207 1zu2_A Mitochondrial import re 97.0 0.00098 3.4E-08 43.1 4.5 110 27-157 13-148 (158)
208 2uy1_A Cleavage stimulation fa 97.0 0.026 8.9E-07 43.2 12.8 123 17-155 287-412 (493)
209 3dss_A Geranylgeranyl transfer 96.9 0.016 5.5E-07 42.0 10.4 143 3-162 92-271 (331)
210 3mkq_A Coatomer beta'-subunit; 96.8 0.016 5.3E-07 46.5 10.9 46 28-75 664-709 (814)
211 3q7a_A Farnesyltransferase alp 96.8 0.027 9.4E-07 41.2 11.1 140 2-156 71-237 (349)
212 3mkq_A Coatomer beta'-subunit; 96.7 0.069 2.4E-06 42.8 14.0 93 3-122 670-762 (814)
213 2kc7_A BFR218_protein; tetratr 96.5 0.043 1.5E-06 31.4 9.4 55 102-156 6-64 (99)
214 3mkq_B Coatomer subunit alpha; 96.5 0.065 2.2E-06 35.2 10.3 49 25-75 14-62 (177)
215 3ly7_A Transcriptional activat 96.3 0.2 6.9E-06 36.9 14.1 139 14-167 192-348 (372)
216 3dss_A Geranylgeranyl transfer 96.2 0.22 7.4E-06 36.2 13.4 148 2-166 47-231 (331)
217 3u64_A Protein TP_0956; tetrat 96.2 0.095 3.3E-06 37.3 10.5 126 30-168 135-283 (301)
218 1dce_A Protein (RAB geranylger 96.1 0.17 5.7E-06 39.5 12.4 113 30-157 43-174 (567)
219 3bee_A Putative YFRE protein; 96.0 0.031 1.1E-06 32.5 6.4 65 14-78 4-74 (93)
220 3ly7_A Transcriptional activat 96.0 0.12 4.2E-06 38.0 10.7 114 2-131 216-347 (372)
221 3bee_A Putative YFRE protein; 95.9 0.085 2.9E-06 30.6 8.0 63 94-156 4-72 (93)
222 2ff4_A Probable regulatory pro 95.7 0.078 2.7E-06 39.3 9.0 122 46-167 111-250 (388)
223 2v5f_A Prolyl 4-hydroxylase su 95.7 0.082 2.8E-06 31.1 7.4 65 96-162 5-79 (104)
224 1pc2_A Mitochondria fission pr 95.4 0.27 9.3E-06 31.4 9.4 89 63-168 14-110 (152)
225 2v5f_A Prolyl 4-hydroxylase su 95.4 0.13 4.3E-06 30.3 7.4 62 15-76 4-75 (104)
226 3u64_A Protein TP_0956; tetrat 95.0 0.08 2.7E-06 37.7 6.5 80 4-83 182-278 (301)
227 3mkq_B Coatomer subunit alpha; 95.0 0.44 1.5E-05 31.2 10.9 120 2-153 22-141 (177)
228 1wy6_A Hypothetical protein ST 94.0 0.65 2.2E-05 29.3 11.1 134 26-159 17-157 (172)
229 2ff4_A Probable regulatory pro 93.7 0.29 1E-05 36.2 7.5 68 18-85 173-248 (388)
230 1pc2_A Mitochondria fission pr 93.2 0.26 8.8E-06 31.5 5.6 79 33-124 15-99 (152)
231 4fhn_B Nucleoporin NUP120; pro 93.1 3.7 0.00013 34.9 14.5 131 5-146 832-990 (1139)
232 4h7y_A Dual specificity protei 92.9 1.1 3.9E-05 28.6 9.5 110 44-163 10-130 (161)
233 4gns_B Protein CSD3, chitin bi 92.4 2.4 8.1E-05 34.4 11.2 133 18-153 250-397 (754)
234 1v54_E Cytochrome C oxidase po 91.3 1.4 4.7E-05 26.1 7.9 60 62-135 25-87 (109)
235 4b4t_P 26S proteasome regulato 90.8 2.1 7.1E-05 32.3 9.0 96 51-155 141-246 (445)
236 4b4t_R RPN7, 26S proteasome re 90.4 1.4 4.9E-05 33.0 7.9 96 49-156 133-237 (429)
237 3lvg_A Clathrin heavy chain 1; 89.4 0.0051 1.7E-07 47.0 -6.0 117 15-152 53-169 (624)
238 1nzn_A CGI-135 protein, fissio 89.1 1.7 5.9E-05 26.7 6.1 81 30-124 15-102 (126)
239 3lvg_A Clathrin heavy chain 1; 88.4 0.034 1.2E-06 42.6 -2.2 115 14-149 81-221 (624)
240 2uy1_A Cleavage stimulation fa 88.4 1.7 6E-05 33.1 7.1 72 2-73 303-380 (493)
241 2y69_E Cytochrome C oxidase su 87.6 3.6 0.00012 25.7 7.9 59 63-135 69-130 (152)
242 4fhn_B Nucleoporin NUP120; pro 87.6 12 0.00042 31.8 15.6 148 19-170 815-979 (1139)
243 1wy6_A Hypothetical protein ST 87.5 3.8 0.00013 25.9 10.0 82 28-125 73-154 (172)
244 3txn_A 26S proteasome regulato 87.3 7.4 0.00025 28.9 12.2 141 17-166 20-180 (394)
245 2uwj_G Type III export protein 86.8 3.3 0.00011 24.4 6.6 73 2-77 23-98 (115)
246 2p58_C Putative type III secre 86.5 3.5 0.00012 24.4 6.9 73 2-77 24-99 (116)
247 3ltj_A Alpharep-4; protein eng 85.8 5.4 0.00018 25.9 14.7 143 8-155 20-179 (201)
248 3ltm_A Alpha-REP4; protein eng 85.6 5.7 0.0002 26.0 16.0 144 7-155 24-184 (211)
249 2uwj_G Type III export protein 85.4 4 0.00014 24.1 7.7 63 101-166 44-106 (115)
250 3ltm_A Alpha-REP4; protein eng 85.4 5.8 0.0002 25.9 15.2 60 94-154 93-152 (211)
251 2ion_A PDCD4, programmed cell 85.0 5.5 0.00019 25.3 7.1 62 99-160 12-78 (152)
252 2p58_C Putative type III secre 85.0 4.3 0.00015 24.0 8.4 62 101-165 45-106 (116)
253 1zbp_A Hypothetical protein VP 84.4 3.3 0.00011 29.1 6.2 68 104-171 5-77 (273)
254 1zbp_A Hypothetical protein VP 83.7 6.1 0.00021 27.7 7.3 54 54-122 4-57 (273)
255 2nsz_A Programmed cell death p 82.6 6.3 0.00022 24.1 8.4 61 100-160 11-76 (129)
256 3ygs_P Procaspase 9; apoptosis 82.5 1.7 5.7E-05 25.3 3.6 39 30-68 51-89 (97)
257 3esl_A Checkpoint serine/threo 82.0 3.5 0.00012 27.6 5.3 78 3-81 62-149 (202)
258 3txn_A 26S proteasome regulato 81.6 14 0.00048 27.4 9.3 131 15-154 57-208 (394)
259 3ygs_P Procaspase 9; apoptosis 78.9 7.3 0.00025 22.5 5.7 39 110-148 51-89 (97)
260 3eiq_C Programmed cell death p 77.9 18 0.00062 26.5 15.4 64 98-161 219-287 (358)
261 3ffl_A Anaphase-promoting comp 77.5 12 0.00041 24.2 7.2 112 18-129 22-157 (167)
262 4b4t_P 26S proteasome regulato 77.0 19 0.00064 27.1 8.6 96 18-123 139-245 (445)
263 2y69_E Cytochrome C oxidase su 75.1 13 0.00044 23.3 9.1 59 111-170 68-130 (152)
264 4gq2_M Nucleoporin NUP120; bet 74.3 37 0.0013 28.4 12.3 99 22-122 816-923 (950)
265 3ltj_A Alpharep-4; protein eng 74.3 15 0.0005 23.7 15.9 52 12-63 55-106 (201)
266 1v54_E Cytochrome C oxidase po 73.6 12 0.0004 22.2 9.2 64 106-170 19-87 (109)
267 3o48_A Mitochondria fission 1 72.0 15 0.00051 22.8 6.8 66 45-124 38-106 (134)
268 2p1h_A APAF-1, apoptotic prote 70.9 11 0.00038 21.4 4.9 39 28-66 48-86 (94)
269 3esl_A Checkpoint serine/threo 69.4 22 0.00076 23.7 10.2 75 49-137 82-156 (202)
270 2wvi_A Mitotic checkpoint seri 68.5 7.4 0.00025 25.1 4.0 49 33-81 77-130 (164)
271 1y8m_A FIS1; mitochondria, unk 68.4 19 0.00066 22.6 7.7 65 45-124 37-105 (144)
272 4gns_B Protein CSD3, chitin bi 67.8 7.8 0.00027 31.5 4.8 53 22-74 343-398 (754)
273 1nzn_A CGI-135 protein, fissio 67.8 18 0.00062 22.1 10.8 60 101-162 40-107 (126)
274 4b4t_S RPN3, 26S proteasome re 67.5 41 0.0014 26.1 11.4 105 16-121 231-366 (523)
275 4b4t_R RPN7, 26S proteasome re 67.5 9.4 0.00032 28.6 5.0 56 100-155 135-196 (429)
276 3ffl_A Anaphase-promoting comp 66.2 24 0.00081 22.8 7.6 101 49-156 22-151 (167)
277 3lpz_A GET4 (YOR164C homolog); 66.2 35 0.0012 24.8 15.8 102 18-120 37-160 (336)
278 2ion_A PDCD4, programmed cell 66.0 22 0.00076 22.4 8.5 64 18-81 11-79 (152)
279 1wgl_A TOLL-interacting protei 64.5 11 0.00038 19.6 3.6 47 113-161 10-57 (59)
280 3l6a_A Eukaryotic translation 62.6 43 0.0015 24.5 7.7 60 100-159 16-80 (364)
281 4aez_C MAD3, mitotic spindle c 61.2 9.9 0.00034 25.8 3.7 49 33-81 131-184 (223)
282 1ug3_A EIF4GI, eukaryotic prot 59.9 13 0.00043 26.9 4.4 61 18-78 13-77 (339)
283 1oyz_A Hypothetical protein YI 58.4 41 0.0014 22.9 13.5 72 95-171 205-276 (280)
284 3us6_A Histidine-containing ph 57.9 32 0.0011 21.6 8.7 39 20-58 11-50 (153)
285 2zu6_B Programmed cell death p 57.8 49 0.0017 23.6 14.3 62 99-160 169-235 (307)
286 1ug3_A EIF4GI, eukaryotic prot 57.6 51 0.0017 23.8 10.4 57 2-58 28-88 (339)
287 2wpv_A GET4, UPF0363 protein Y 57.5 50 0.0017 23.7 15.4 27 94-120 132-158 (312)
288 2nsz_A Programmed cell death p 57.1 30 0.001 21.0 9.7 64 18-81 9-77 (129)
289 1oxz_A ADP-ribosylation factor 55.0 42 0.0014 22.0 5.8 23 101-123 36-61 (186)
290 2wpv_A GET4, UPF0363 protein Y 53.6 59 0.002 23.3 9.0 25 126-150 133-157 (312)
291 1qsa_A Protein (soluble lytic 52.9 67 0.0023 25.4 7.7 118 2-136 231-357 (618)
292 4h7y_A Dual specificity protei 52.3 18 0.00062 23.1 3.6 53 29-81 73-128 (161)
293 2dod_A Transcription elongatio 50.3 13 0.00045 20.8 2.5 26 143-169 16-42 (82)
294 4aez_C MAD3, mitotic spindle c 48.7 60 0.0021 22.0 8.6 59 64-135 131-189 (223)
295 1uzc_A Hypothetical protein FL 48.5 14 0.00046 20.1 2.3 26 143-169 14-40 (71)
296 3kae_A CDC27, possible protein 47.5 58 0.002 21.5 9.1 93 28-122 45-140 (242)
297 2wvi_A Mitotic checkpoint seri 46.8 55 0.0019 21.0 8.5 61 64-137 77-137 (164)
298 2p1h_A APAF-1, apoptotic prote 46.6 38 0.0013 19.1 5.1 39 108-146 48-86 (94)
299 2rg8_A Programmed cell death p 46.6 42 0.0014 21.5 4.8 27 100-126 14-40 (165)
300 3bu8_A Telomeric repeat-bindin 46.5 66 0.0023 21.8 6.4 55 63-124 88-142 (235)
301 3f3f_C Nucleoporin NUP85; stru 42.4 37 0.0013 26.6 4.6 86 60-146 479-568 (570)
302 1naf_A ADP-ribosylation factor 42.3 44 0.0015 21.3 4.3 10 69-78 21-30 (158)
303 2jp7_A MRNA export factor MEX6 41.6 19 0.00064 18.6 2.1 27 136-163 27-54 (57)
304 1oai_A Nuclear RNA export fact 40.8 38 0.0013 17.5 3.8 23 140-162 33-56 (59)
305 2b7e_A PRE-mRNA processing pro 40.6 17 0.0006 18.9 1.8 28 63-90 2-29 (59)
306 3bqo_A Telomeric repeat-bindin 40.0 70 0.0024 21.4 5.0 45 32-76 94-146 (211)
307 1q2z_A ATP-dependent DNA helic 39.5 21 0.00072 21.5 2.4 49 109-160 40-96 (120)
308 4gq2_M Nucleoporin NUP120; bet 37.9 1.8E+02 0.0061 24.4 11.9 72 4-76 829-926 (950)
309 3t5v_B Nuclear mRNA export pro 37.7 81 0.0028 24.0 5.8 68 49-122 178-246 (455)
310 1ixm_A SPO0B, protein (sporula 36.6 60 0.0021 21.3 4.4 24 131-154 36-59 (192)
311 3lpz_A GET4 (YOR164C homolog); 36.2 1.2E+02 0.0042 22.0 10.6 25 126-150 135-159 (336)
312 3eiq_C Programmed cell death p 36.0 1.3E+02 0.0043 22.1 9.0 64 18-81 219-287 (358)
313 2zu6_B Programmed cell death p 35.9 1.2E+02 0.004 21.6 8.9 64 18-81 168-236 (307)
314 2xs6_A Phosphatidylinositol 3- 35.8 21 0.0007 24.0 2.1 53 6-58 92-146 (214)
315 1rw2_A ATP-dependent DNA helic 34.9 37 0.0013 21.5 3.0 48 110-160 72-127 (152)
316 2o03_A Probable zinc uptake re 33.6 79 0.0027 19.0 4.9 32 133-164 16-47 (131)
317 2fe3_A Peroxide operon regulat 33.0 86 0.0029 19.2 6.0 44 126-169 20-63 (145)
318 2chq_A Replication factor C sm 33.0 1.2E+02 0.0041 20.9 10.6 33 129-162 230-263 (319)
319 4fke_A Aminopeptidase N; zinc 32.5 2.2E+02 0.0075 23.7 11.5 26 51-76 690-718 (909)
320 3crd_A Raidd; caspase recruitm 32.1 74 0.0025 18.2 4.3 48 108-158 47-94 (100)
321 3f3f_C Nucleoporin NUP85; stru 32.1 39 0.0013 26.5 3.3 52 14-66 514-568 (570)
322 1pbw_A Rhogap domain, phosphat 32.0 89 0.0031 20.7 4.8 51 120-170 88-142 (216)
323 2bbr_A Viral CAsp8 and FADD-li 31.9 1.1E+02 0.0038 20.2 5.2 101 4-120 42-175 (195)
324 1a1w_A FADD protein; apoptosis 31.7 65 0.0022 18.3 3.5 60 46-121 19-82 (91)
325 2crb_A Nuclear receptor bindin 31.1 79 0.0027 18.2 3.9 27 96-122 15-41 (97)
326 3t8k_A Uncharacterized protein 30.2 1.1E+02 0.0037 19.5 5.1 23 139-161 47-69 (186)
327 1zl8_A LIN-7; heterodimer, alp 30.0 32 0.0011 17.2 1.7 21 61-81 7-27 (53)
328 3cqc_A Nuclear pore complex pr 29.7 47 0.0016 23.2 3.2 28 18-45 36-63 (270)
329 3mwm_A ZUR, putative metal upt 29.3 69 0.0024 19.6 3.6 22 101-122 18-39 (139)
330 3ctd_A Putative ATPase, AAA fa 29.3 1.3E+02 0.0045 20.2 6.2 65 49-113 34-108 (213)
331 4b4t_S RPN3, 26S proteasome re 28.9 1.6E+02 0.0055 22.9 6.1 61 96-156 231-299 (523)
332 1yvi_A Histidine-containing ph 28.0 1.1E+02 0.0038 18.9 7.8 45 111-155 71-122 (149)
333 3lxu_X Tripeptidyl-peptidase 2 27.6 3.2E+02 0.011 24.2 8.5 72 99-172 1237-1327(1354)
334 1n3k_A Astrocytic phosphoprote 26.9 1.1E+02 0.0037 18.8 4.1 43 63-121 39-82 (130)
335 2ijq_A Hypothetical protein; s 26.0 1.3E+02 0.0045 19.2 6.3 54 57-122 42-101 (161)
336 2cwy_A Hypothetical protein TT 24.8 1E+02 0.0035 17.5 4.0 28 58-85 12-39 (94)
337 4ets_A Ferric uptake regulatio 24.7 1.4E+02 0.0046 18.8 5.8 51 115-165 20-72 (162)
338 3l6a_A Eukaryotic translation 24.7 2.1E+02 0.0071 20.9 13.9 63 18-80 14-81 (364)
339 4ady_A RPN2, 26S proteasome re 24.2 2.6E+02 0.009 23.7 6.9 98 47-154 145-257 (963)
340 1y1x_A Leishmania major homolo 23.6 99 0.0034 19.5 3.8 42 111-155 127-170 (191)
341 2e2a_A Protein (enzyme IIA); h 23.4 76 0.0026 18.6 2.8 16 138-153 31-46 (105)
342 3kat_A Nacht, LRR and PYD doma 23.3 81 0.0028 18.6 2.9 43 15-60 49-91 (107)
343 1wcr_A PTS system, N, N'-diace 23.1 78 0.0027 18.5 2.8 16 138-153 29-44 (103)
344 3o48_A Mitochondria fission 1 22.2 1.5E+02 0.005 18.3 8.5 61 102-164 46-113 (134)
345 3t5v_B Nuclear mRNA export pro 22.0 1.6E+02 0.0054 22.4 5.0 60 97-156 177-249 (455)
346 1mzb_A Ferric uptake regulatio 22.0 1.4E+02 0.0048 18.0 4.5 22 101-122 22-44 (136)
347 2xig_A Ferric uptake regulatio 21.5 1.5E+02 0.0052 18.3 6.2 43 126-168 25-67 (150)
348 3bqs_A Uncharacterized protein 21.4 1.2E+02 0.0043 17.2 3.8 27 145-171 35-61 (93)
349 2keb_A DNA polymerase subunit 21.3 1.3E+02 0.0045 17.5 3.4 29 144-172 26-54 (101)
350 3mab_A Uncharacterized protein 20.5 1.3E+02 0.0045 17.1 3.5 28 145-172 35-62 (93)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=9.6e-34 Score=216.94 Aligned_cols=171 Identities=11% Similarity=0.090 Sum_probs=141.0
Q ss_pred HHHHhhccCC----Cc-HHHHHHHHHHHHhcCChhHHHHHhhcCC----CCChhHHHHHHHHHhccCC---------hHH
Q 045555 4 ALEIFGNMKN----KD-VISWTTIVSGYINRGQVDIARQYFAQMP----ERDYVLWTAMIDGYLRVNR---------FRE 65 (175)
Q Consensus 4 A~~~~~~m~~----~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~li~~~~~~~~---------~~~ 65 (175)
+..+.+.+.+ +. ...++.+|.+|++.|++++|.++|++|. +||.+|||+||++|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 4455555554 22 2357778888888888888888888887 3788888888888877654 577
Q ss_pred HHHHHHHhHhCCCCCChHHHHHhhh---------------------ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhh--
Q 045555 66 ALTLFREMQTSNIRRDEFTTVRILT---------------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM-- 122 (175)
Q Consensus 66 a~~~~~~m~~~~~~p~~~~~~~l~~---------------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~-- 122 (175)
|.++|++|...|+.||..||++++. |+.||..+||++|.+|++.|++++|.++|++|
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 8888888888888888888888887 77888999999999999999999999999999
Q ss_pred --cCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhhhcC
Q 045555 123 --LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174 (175)
Q Consensus 123 --~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 174 (175)
..||..+|++||.+|++.|++++|.++|++|.+.|..|+..||..|+..+++
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 4589999999999999999999999999999999999999999999998764
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=6.6e-32 Score=206.78 Aligned_cols=142 Identities=13% Similarity=0.148 Sum_probs=123.5
Q ss_pred HHHHHhhcCCCC-----ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhh------------------
Q 045555 34 IARQYFAQMPER-----DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT------------------ 90 (175)
Q Consensus 34 ~a~~~~~~m~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~------------------ 90 (175)
.+..+.+.+++. ....++.+|++|++.|++++|+++|++|.+.|+.||..||++++.
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 345555566542 345689999999999999999999999999999999999999985
Q ss_pred ------------ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhc----CCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 045555 91 ------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML----RKDKFTWTAMIVGLAISGHGDTALDMFSQML 154 (175)
Q Consensus 91 ------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (175)
|+.||..+||++|.+|++.|++++|.++|++|. .||..+||++|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 788999999999999999999999999999994 5799999999999999999999999999999
Q ss_pred HCCCCCcHHHHHHHHhhhcCC
Q 045555 155 RASIRLDEVTYVGVLSACTHN 175 (175)
Q Consensus 155 ~~g~~p~~~t~~~ll~~~~~~ 175 (175)
+.|+.||..||+.||++|+++
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHT
T ss_pred hcCCCCCHHHHHHHHHHHhhC
Confidence 999999999999999999864
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.89 E-value=1.8e-23 Score=167.32 Aligned_cols=114 Identities=14% Similarity=0.102 Sum_probs=100.9
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHHhHh---CCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhh-
Q 045555 47 YVLWTAMIDGYLRVNRFREALTLFREMQT---SNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM- 122 (175)
Q Consensus 47 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~- 122 (175)
..|||+||++||+.|++++|.++|++|.+ .|+.||.+|| |+||++||+.|++++|.++|++|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTY--------------NtLI~Glck~G~~~eA~~Lf~eM~ 192 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMY--------------NAVMLGWARQGAFKELVYVLFMVK 192 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHH--------------HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHH--------------HHHHHHHHhCCCHHHHHHHHHHHH
Confidence 35899999999999999999999988764 4666665555 89999999999999999999999
Q ss_pred ---cCCChhhHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCcHHHHHHHHhhhcC
Q 045555 123 ---LRKDKFTWTAMIVGLAISGHG-DTALDMFSQMLRASIRLDEVTYVGVLSACTH 174 (175)
Q Consensus 123 ---~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 174 (175)
..||.+|||++|.++|+.|+. ++|.++|++|.++|+.||..||+.++.++.+
T Consensus 193 ~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 458999999999999999985 7899999999999999999999987776643
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.87 E-value=1.2e-22 Score=162.76 Aligned_cols=127 Identities=12% Similarity=0.172 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHhhcCC-------CCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHh
Q 045555 16 VISWTTIVSGYINRGQVDIARQYFAQMP-------ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRI 88 (175)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 88 (175)
..+||++|++||+.|++++|.++|..|. .||++|||+||++||+.|++++|.++|++|...|+.||.+||
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY--- 203 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY--- 203 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH---
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH---
Confidence 4589999999999999999999997754 589999999999999999999999999999999988887777
Q ss_pred hhccCcchhHHHHHHHHHHhcCCH-HHHHHHHHhh----cCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc
Q 045555 89 LTTFNNDIFVGIALIDMYCKCGDV-EKAQRVFWKM----LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161 (175)
Q Consensus 89 ~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 161 (175)
|++|+++++.|+. ++|.++|++| ..||..+|++++.++.+. .+++..+++ ..+++|+
T Consensus 204 -----------ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 204 -----------AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp -----------HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCC
T ss_pred -----------HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCC
Confidence 7999999999985 7899999999 458999999999877654 555555555 4466665
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.73 E-value=8.1e-17 Score=124.96 Aligned_cols=145 Identities=13% Similarity=0.153 Sum_probs=103.1
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhc
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT 91 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (175)
+..+++.++..|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------- 437 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-------------- 437 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--------------
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------
Confidence 344555555555555555555555554431 234455555555555555555555555554432
Q ss_pred cCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCc--H
Q 045555 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR---KDKFTWTAMIVGLAISGHGDTALDMFSQMLRA----SIRLD--E 162 (175)
Q Consensus 92 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~ 162 (175)
+.+..+++.++.+|.+.|++++|.++|+.+.+ .+..+|+.++..|.+.|++++|.++|+++.+. +..|+ .
T Consensus 438 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~ 516 (597)
T 2xpi_A 438 -QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWA 516 (597)
T ss_dssp -TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGH
T ss_pred -ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHH
Confidence 33567778999999999999999999999854 47889999999999999999999999999876 77888 7
Q ss_pred HHHHHHHhhhcC
Q 045555 163 VTYVGVLSACTH 174 (175)
Q Consensus 163 ~t~~~ll~~~~~ 174 (175)
.++..+..+|.+
T Consensus 517 ~~~~~l~~~~~~ 528 (597)
T 2xpi_A 517 ATWANLGHAYRK 528 (597)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 788888887753
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.70 E-value=3.6e-16 Score=121.33 Aligned_cols=171 Identities=8% Similarity=-0.019 Sum_probs=132.8
Q ss_pred chHHHHhhccCC--CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhC
Q 045555 2 GFALEIFGNMKN--KDVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTS 76 (175)
Q Consensus 2 ~~A~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (175)
++|.++|+++.+ ++..+++.++..|.+.|++++|.++|+++.+ .+..+|+.++.++.+.|++++|..+++++.+.
T Consensus 289 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 368 (597)
T 2xpi_A 289 RRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR 368 (597)
T ss_dssp HHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence 578999999987 7999999999999999999999999998863 46778999999999999999999999999864
Q ss_pred CCCCChHHHHHhhh-------------------c-cCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC---CChhhHHHH
Q 045555 77 NIRRDEFTTVRILT-------------------T-FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR---KDKFTWTAM 133 (175)
Q Consensus 77 ~~~p~~~~~~~l~~-------------------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l 133 (175)
. ..+..++..+.. . .+.+..+|+.++.+|.+.|++++|.++|+++.+ .+..+|+.+
T Consensus 369 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 447 (597)
T 2xpi_A 369 H-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFL 447 (597)
T ss_dssp C-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHH
T ss_pred C-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 3 234555555433 1 233466788888888888888888888887743 367788888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhhhcC
Q 045555 134 IVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174 (175)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 174 (175)
+.+|.+.|++++|.+.|+++.+.. +.+..++..+...|.+
T Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 487 (597)
T 2xpi_A 448 GMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFN 487 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 888888888888888888887642 3356777777766643
No 7
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.42 E-value=1.6e-13 Score=102.58 Aligned_cols=157 Identities=12% Similarity=0.154 Sum_probs=48.1
Q ss_pred CchHHHHhhccCCCcHHHHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCC
Q 045555 1 MGFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR 80 (175)
Q Consensus 1 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 80 (175)
+++|.++++++..| .+|..+..++.+.|++++|.+.|.+. +|..+|..++.++...|++++|+..+...++. .+
T Consensus 19 ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~ 92 (449)
T 1b89_A 19 LDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--AR 92 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--Cc
Confidence 36788888888655 49999999999999999999999764 67779999999999999999999977766664 33
Q ss_pred ChHHHHHhhh--------------ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhcCChhHH
Q 045555 81 DEFTTVRILT--------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTA 146 (175)
Q Consensus 81 ~~~~~~~l~~--------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 146 (175)
++.+.+.++. --.|+...|+.+.+.|...|++++|...|..+ ..|..++.++++.|++++|
T Consensus 93 ~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~A 167 (449)
T 1b89_A 93 ESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAA 167 (449)
T ss_dssp ----------------CHHHHTTTTTCC----------------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHH
T ss_pred cchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHhccHHHH
Confidence 3444444443 12466678899999999999999999999977 4899999999999999999
Q ss_pred HHHHHHHHHCCCCCcHHHHHHHHhhhcC
Q 045555 147 LDMFSQMLRASIRLDEVTYVGVLSACTH 174 (175)
Q Consensus 147 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 174 (175)
.+.++++ .+..||..++.+|..
T Consensus 168 Vea~~KA------~~~~~Wk~v~~aCv~ 189 (449)
T 1b89_A 168 VDGARKA------NSTRTWKEVCFACVD 189 (449)
T ss_dssp HHHHHHH------TCHHHHHHHHHHHHH
T ss_pred HHHHHHc------CCchhHHHHHHHHHH
Confidence 9999988 378889998888863
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.41 E-value=7.7e-12 Score=92.34 Aligned_cols=153 Identities=13% Similarity=0.078 Sum_probs=95.3
Q ss_pred hHHHHhhccCC--C-cHHHHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhHhC
Q 045555 3 FALEIFGNMKN--K-DVISWTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQTS 76 (175)
Q Consensus 3 ~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (175)
+|++.|+++.+ | +...+..+...+...|++++|...|++..+ | +..++..+...+.+.|++++|+..|+++.+.
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 266 (388)
T 1w3b_A 187 LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45555555543 2 344555555666666666666666554432 2 3455555556666666666666666665553
Q ss_pred CCCCChHHHHHhhh--------------------ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHH
Q 045555 77 NIRRDEFTTVRILT--------------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAM 133 (175)
Q Consensus 77 ~~~p~~~~~~~l~~--------------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l 133 (175)
+.. +...+..+.. ..+.+..++..+...+.+.|++++|.+.|+++.+ | +..+|..+
T Consensus 267 ~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 345 (388)
T 1w3b_A 267 QPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL 345 (388)
T ss_dssp CSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 211 1112221111 2244566778888888888999999888888854 3 46678888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC
Q 045555 134 IVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
...|.+.|++++|.+.|+++.+.
T Consensus 346 ~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 346 ASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Confidence 88888899999999999888763
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.40 E-value=2.3e-11 Score=89.82 Aligned_cols=169 Identities=10% Similarity=0.068 Sum_probs=129.7
Q ss_pred chHHHHhhccCC--C-cHHHHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 2 GFALEIFGNMKN--K-DVISWTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 2 ~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
++|.+.|+.+.+ | +..+|..+...+.+.|++++|...|+++.+ | +...|..+...+...|++++|+..|++..+
T Consensus 152 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 231 (388)
T 1w3b_A 152 EEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 578889988875 4 578999999999999999999999998864 3 567899999999999999999999999988
Q ss_pred CCCCCC-hHHHHHhhh-------------------ccCc-chhHHHHHHHHHHhcCCHHHHHHHHHhhcC---CChhhHH
Q 045555 76 SNIRRD-EFTTVRILT-------------------TFNN-DIFVGIALIDMYCKCGDVEKAQRVFWKMLR---KDKFTWT 131 (175)
Q Consensus 76 ~~~~p~-~~~~~~l~~-------------------~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~ 131 (175)
.. |+ ...+..+.. ...| +..++..+...+.+.|++++|.+.|+.+.+ .+..+|+
T Consensus 232 ~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 309 (388)
T 1w3b_A 232 LS--PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN 309 (388)
T ss_dssp HC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHH
Confidence 53 43 333333222 2223 466788888888888888888888888743 3677888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhhhc
Q 045555 132 AMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSACT 173 (175)
Q Consensus 132 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 173 (175)
.+...+...|++++|.+.++++.+. .+.+..++..+...+.
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~ 350 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQ 350 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHH
Confidence 8888888888888888888888764 2334556666655543
No 10
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.39 E-value=7.3e-11 Score=81.89 Aligned_cols=154 Identities=12% Similarity=0.035 Sum_probs=93.6
Q ss_pred chHHHHhhccCC---CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 2 GFALEIFGNMKN---KDVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 2 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
++|.+.|+...+ .+..++..+...|.+.|++++|.+.|++..+ .+...+..+...+.+.|++++|.+.++++.+
T Consensus 54 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 54 EQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp GGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 567777776654 3667888888888888888888888887653 3666788888888888888888888888877
Q ss_pred CCCCCChH-HHHHhhh--------------------ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC---CChhhHH
Q 045555 76 SNIRRDEF-TTVRILT--------------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR---KDKFTWT 131 (175)
Q Consensus 76 ~~~~p~~~-~~~~l~~--------------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~ 131 (175)
.+..|+.. .+..+.. ..+.+...+..+...|.+.|++++|...++...+ .+...+.
T Consensus 134 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 213 (252)
T 2ho1_A 134 DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLL 213 (252)
T ss_dssp CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence 33334322 1111110 1112234444555555555555555555555432 1334444
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 045555 132 AMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 132 ~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
.+...+...|++++|.+.++++.+
T Consensus 214 ~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 214 LGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555555555555555555544
No 11
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.37 E-value=5.4e-11 Score=80.81 Aligned_cols=142 Identities=13% Similarity=0.029 Sum_probs=107.0
Q ss_pred chHHHHhhccCC---CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhcc-CChHHHHHHHHHhH
Q 045555 2 GFALEIFGNMKN---KDVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRV-NRFREALTLFREMQ 74 (175)
Q Consensus 2 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~ 74 (175)
++|.+.|+...+ .+...+..+...|.+.|++++|...|++..+ .+..++..+...+... |++++|...++++.
T Consensus 25 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 104 (225)
T 2vq2_A 25 RQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKAL 104 (225)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 467777776654 3577888999999999999999999998753 4677888899999999 99999999999998
Q ss_pred hCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHH
Q 045555 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMFS 151 (175)
Q Consensus 75 ~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~ 151 (175)
+.+..|+ +...+..+..++.+.|++++|...|+...+ | +...+..+...+...|++++|.+.++
T Consensus 105 ~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 171 (225)
T 2vq2_A 105 ADPTYPT-------------PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFK 171 (225)
T ss_dssp TSTTCSC-------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCcCCcc-------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8332232 233445677777777888888777777633 2 46667777777777778888877777
Q ss_pred HHHHC
Q 045555 152 QMLRA 156 (175)
Q Consensus 152 ~m~~~ 156 (175)
+..+.
T Consensus 172 ~~~~~ 176 (225)
T 2vq2_A 172 KYQSR 176 (225)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77664
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.37 E-value=1.9e-11 Score=91.67 Aligned_cols=159 Identities=14% Similarity=0.096 Sum_probs=126.0
Q ss_pred chHHHHhhccCC---CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 2 GFALEIFGNMKN---KDVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 2 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
++|+++|+.+.+ .+..++..+..+|.+.|++++|...|+++.+ .+..++..+...|.+.|++++|...|+++.+
T Consensus 43 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 122 (450)
T 2y4t_A 43 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK 122 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 578888887764 4788899999999999999999999998764 3677899999999999999999999999988
Q ss_pred CCCCCCh----HHHHHhh--------------------------------hccCcchhHHHHHHHHHHhcCCHHHHHHHH
Q 045555 76 SNIRRDE----FTTVRIL--------------------------------TTFNNDIFVGIALIDMYCKCGDVEKAQRVF 119 (175)
Q Consensus 76 ~~~~p~~----~~~~~l~--------------------------------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 119 (175)
.. |+. ..+..+. ...+.+...+..+..+|.+.|++++|.+.|
T Consensus 123 ~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 200 (450)
T 2y4t_A 123 SN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDL 200 (450)
T ss_dssp SC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHH
T ss_pred cC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 54 433 2222221 123446778888999999999999999999
Q ss_pred HhhcC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHH
Q 045555 120 WKMLR---KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVT 164 (175)
Q Consensus 120 ~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 164 (175)
+.+.+ .+..+|..+...|...|++++|.+.|+++.+. .|+...
T Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~ 246 (450)
T 2y4t_A 201 KAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKR 246 (450)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHH
Confidence 98843 46788999999999999999999999999864 454433
No 13
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.35 E-value=1.1e-10 Score=76.86 Aligned_cols=139 Identities=17% Similarity=0.182 Sum_probs=89.7
Q ss_pred chHHHHhhccCC---CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 2 GFALEIFGNMKN---KDVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 2 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
++|.+.|+...+ .+..++..+...+.+.|++++|...+++..+ .+...+..+...+...|++++|...+++..+
T Consensus 25 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 104 (186)
T 3as5_A 25 SQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAE 104 (186)
T ss_dssp HHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 355666665554 2455666666666666666666666665442 3455566666666666666666666666665
Q ss_pred CCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC---CChhhHHHHHHHHHhcCChhHHHHHHHH
Q 045555 76 SNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR---KDKFTWTAMIVGLAISGHGDTALDMFSQ 152 (175)
Q Consensus 76 ~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~ 152 (175)
.. +.+...+..+...+.+.|++++|.+.++...+ .+...+..+...+...|++++|.+.+++
T Consensus 105 ~~---------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 105 AN---------------PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp HC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cC---------------cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 42 22334456677777777788887777777633 2556777777777777788888777777
Q ss_pred HHH
Q 045555 153 MLR 155 (175)
Q Consensus 153 m~~ 155 (175)
..+
T Consensus 170 ~~~ 172 (186)
T 3as5_A 170 ANE 172 (186)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 14
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.34 E-value=5.5e-11 Score=89.09 Aligned_cols=157 Identities=11% Similarity=0.066 Sum_probs=121.6
Q ss_pred chHHHHhhccCC---CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 2 GFALEIFGNMKN---KDVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 2 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
++|++.|+.+.+ .+..++..+...|.+.|++++|...|+++.+ .+..+|..+...+.+.|++++|+..|+++.+
T Consensus 160 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 160 TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788887764 4788999999999999999999999999864 5788999999999999999999999999987
Q ss_pred CCCCCChHHHHHhh-------------h-------------------ccCcc-----hhHHHHHHHHHHhcCCHHHHHHH
Q 045555 76 SNIRRDEFTTVRIL-------------T-------------------TFNND-----IFVGIALIDMYCKCGDVEKAQRV 118 (175)
Q Consensus 76 ~~~~p~~~~~~~l~-------------~-------------------~~~~~-----~~~~~~li~~~~~~~~~~~a~~~ 118 (175)
. .|+.......+ . ...|+ ...+..+..++.+.|++++|...
T Consensus 240 ~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 240 L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred h--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 5 34433322111 0 22343 34677788888888888888888
Q ss_pred HHhhc--CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcH
Q 045555 119 FWKML--RK-DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162 (175)
Q Consensus 119 ~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 162 (175)
++.+. .| +...|..+..+|...|++++|.+.|+++.+ +.|+.
T Consensus 318 ~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~ 362 (450)
T 2y4t_A 318 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNEND 362 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSC
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcch
Confidence 88874 34 577888888888888888888888888876 34543
No 15
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.34 E-value=1.6e-10 Score=76.72 Aligned_cols=146 Identities=12% Similarity=0.083 Sum_probs=107.6
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhh-
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT- 90 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~- 90 (175)
+...|..+...|.+.|++++|...|++..+ .+..+|..+...+.+.|++++|+..+.+..................
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 456777788888888888888888887653 3566777777778888888888888877776543222111111000
Q ss_pred ------------------ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHH
Q 045555 91 ------------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDM 149 (175)
Q Consensus 91 ------------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~ 149 (175)
..+.+...+..+...|.+.|++++|.+.|++..+ | +...|..+...|.+.|++++|.+.
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 163 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKY 163 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 2234567788899999999999999999999843 4 677899999999999999999999
Q ss_pred HHHHHHCCCCCcH
Q 045555 150 FSQMLRASIRLDE 162 (175)
Q Consensus 150 ~~~m~~~g~~p~~ 162 (175)
|++.++. .|+.
T Consensus 164 ~~~al~~--~p~~ 174 (184)
T 3vtx_A 164 FKKALEK--EEKK 174 (184)
T ss_dssp HHHHHHT--THHH
T ss_pred HHHHHhC--CccC
Confidence 9999874 4554
No 16
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.33 E-value=2.3e-10 Score=81.87 Aligned_cols=150 Identities=15% Similarity=0.084 Sum_probs=104.4
Q ss_pred chHHHHhhccC----CC-cHHHHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhC
Q 045555 2 GFALEIFGNMK----NK-DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS 76 (175)
Q Consensus 2 ~~A~~~~~~m~----~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (175)
++|++.++++. .| +...+..+...+.+.|++++|...+++ ..+...+..+...+.+.|++++|...|+++.+.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 46788888763 24 566777888999999999999999998 567788999999999999999999999999986
Q ss_pred CCCCChHH------HHHhhh-----------------ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhH
Q 045555 77 NIRRDEFT------TVRILT-----------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTW 130 (175)
Q Consensus 77 ~~~p~~~~------~~~l~~-----------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~ 130 (175)
. |+... |..+.. ..+.+...++.+..++.+.|++++|.+.|++..+ | +..++
T Consensus 160 ~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 160 D--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp C--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred C--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 4 44321 111110 2344555666666666666666666666666532 3 45566
Q ss_pred HHHHHHHHhcCChhH-HHHHHHHHHH
Q 045555 131 TAMIVGLAISGHGDT-ALDMFSQMLR 155 (175)
Q Consensus 131 ~~li~~~~~~g~~~~-a~~~~~~m~~ 155 (175)
..++..+...|+.++ +.++++++.+
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 666666666666654 3456666554
No 17
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.31 E-value=1.5e-10 Score=72.07 Aligned_cols=125 Identities=20% Similarity=0.366 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccC
Q 045555 17 ISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFN 93 (175)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 93 (175)
.+|..+...+.+.|++++|..+|+++.+ .+...+..+...+...|++++|...++++.+.+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------------- 66 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--------------- 66 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---------------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC---------------
Confidence 3678889999999999999999998753 4677888999999999999999999999987542
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHhhcC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 94 NDIFVGIALIDMYCKCGDVEKAQRVFWKMLR---KDKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 94 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
.+...+..+...+.+.|++++|.+.++.+.. .+...+..+...+.+.|++++|.+.++++.+.
T Consensus 67 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 2334556789999999999999999999843 36778889999999999999999999998864
No 18
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.31 E-value=1.2e-10 Score=80.18 Aligned_cols=153 Identities=14% Similarity=0.144 Sum_probs=91.5
Q ss_pred chHHHHhhccCC---CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 2 GFALEIFGNMKN---KDVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 2 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
++|...|+...+ .+...+..+...+.+.|++++|...|++..+ .+...+..+...+...|++++|...+++..+
T Consensus 40 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 119 (243)
T 2q7f_A 40 EKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALR 119 (243)
T ss_dssp --CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345555555543 3567778888888888888888888887653 3566777788888888888888888888877
Q ss_pred CCCCCChHHHHHhhh--------------------ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC---CChhhHHH
Q 045555 76 SNIRRDEFTTVRILT--------------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR---KDKFTWTA 132 (175)
Q Consensus 76 ~~~~p~~~~~~~l~~--------------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ 132 (175)
.... +...+..+.. ..+.+...+..+...|.+.|++++|...|+...+ .+..+|..
T Consensus 120 ~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 198 (243)
T 2q7f_A 120 AGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYN 198 (243)
T ss_dssp HTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 5421 2222211111 1122344555555555566666666666555522 23445555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 045555 133 MIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
+...|...|++++|.+.++++.+
T Consensus 199 la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 199 AGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHc
Confidence 55666666666666666666554
No 19
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.30 E-value=2e-10 Score=78.62 Aligned_cols=152 Identities=16% Similarity=0.131 Sum_probs=119.1
Q ss_pred chHHHHhhccCC--C-cHHHHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhcc-----------CChH
Q 045555 2 GFALEIFGNMKN--K-DVISWTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRV-----------NRFR 64 (175)
Q Consensus 2 ~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~-----------~~~~ 64 (175)
++|+..|+...+ | +...+..+...+.+.|++++|...|++..+ | +...+..+...+.+. |+++
T Consensus 22 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~ 101 (217)
T 2pl2_A 22 DAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLE 101 (217)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHH
Confidence 467777776654 3 677888888888889999999988887653 3 566788888888888 8899
Q ss_pred HHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--CChhhHHHHHHHHHhcCC
Q 045555 65 EALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--KDKFTWTAMIVGLAISGH 142 (175)
Q Consensus 65 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~ 142 (175)
+|+..|++..+.. | .+...+..+...|...|++++|...|++..+ .+...+..+...|...|+
T Consensus 102 ~A~~~~~~al~~~--P-------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~ 166 (217)
T 2pl2_A 102 QALSVLKDAERVN--P-------------RYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGR 166 (217)
T ss_dssp HHHHHHHHHHHHC--T-------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC--c-------------ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCC
Confidence 9999888888753 2 2345567899999999999999999999843 677788999999999999
Q ss_pred hhHHHHHHHHHHHCCCCC-cHHHHHHHHh
Q 045555 143 GDTALDMFSQMLRASIRL-DEVTYVGVLS 170 (175)
Q Consensus 143 ~~~a~~~~~~m~~~g~~p-~~~t~~~ll~ 170 (175)
+++|...|++..+. .| +...+..+-.
T Consensus 167 ~~~A~~~~~~al~~--~P~~~~~~~~la~ 193 (217)
T 2pl2_A 167 LDEALAQYAKALEQ--APKDLDLRVRYAS 193 (217)
T ss_dssp HHHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 99999999999874 34 3444444433
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.30 E-value=5.9e-11 Score=86.82 Aligned_cols=166 Identities=13% Similarity=0.136 Sum_probs=129.1
Q ss_pred chHHHHhhccCC---CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 2 GFALEIFGNMKN---KDVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 2 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
++|++.|+.+.+ .+..++..+...|.+.|++++|...|++..+ .+..+|..+...|.+.|++++|+..|+++.+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 161 (365)
T 4eqf_A 82 PVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIK 161 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence 568888887765 4778999999999999999999999998763 4678899999999999999999999999987
Q ss_pred CCCCCChHH-H------------------------------HHhhhccCc---chhHHHHHHHHHHhcCCHHHHHHHHHh
Q 045555 76 SNIRRDEFT-T------------------------------VRILTTFNN---DIFVGIALIDMYCKCGDVEKAQRVFWK 121 (175)
Q Consensus 76 ~~~~p~~~~-~------------------------------~~l~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~ 121 (175)
.. |+... + ...+ ...| +..++..+...|.+.|++++|.+.|++
T Consensus 162 ~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 238 (365)
T 4eqf_A 162 QN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAA-HQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNA 238 (365)
T ss_dssp HC--HHHHCC-------------------CCHHHHHHHHHHHHHH-HHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHH-HhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 43 22111 0 0011 1223 577888999999999999999999999
Q ss_pred hcC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc-HHHHHHHHhhh
Q 045555 122 MLR--K-DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD-EVTYVGVLSAC 172 (175)
Q Consensus 122 ~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~ 172 (175)
..+ | +..+|..+...|...|++++|.+.|++..+. .|+ ..++..+-..|
T Consensus 239 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 239 ALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISC 291 (365)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHH
Confidence 843 3 6788999999999999999999999998875 343 55555554443
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.28 E-value=5.4e-10 Score=81.50 Aligned_cols=168 Identities=15% Similarity=0.142 Sum_probs=128.3
Q ss_pred chHHHHhhccCC---CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 2 GFALEIFGNMKN---KDVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 2 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
++|+..|+.+.+ .+..++..+...|.+.|++++|...|++..+ .+..++..+...+...|++++|...++++.+
T Consensus 81 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (368)
T 1fch_A 81 PNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR 160 (368)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788887764 4677899999999999999999999998663 4777899999999999999999999999988
Q ss_pred CCCCCChHH----------------------------------HHHhhhccCc---chhHHHHHHHHHHhcCCHHHHHHH
Q 045555 76 SNIRRDEFT----------------------------------TVRILTTFNN---DIFVGIALIDMYCKCGDVEKAQRV 118 (175)
Q Consensus 76 ~~~~p~~~~----------------------------------~~~l~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~ 118 (175)
......... +..++ ...| +..++..+...|.+.|++++|...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~ 239 (368)
T 1fch_A 161 YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAV-RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDC 239 (368)
T ss_dssp TSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHH-HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHH-HhCcCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 643221111 11111 1233 477888999999999999999999
Q ss_pred HHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhh
Q 045555 119 FWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171 (175)
Q Consensus 119 ~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 171 (175)
|++... | +...|..+...+...|++++|.+.|+++.+.. +.+...+..+-..
T Consensus 240 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~ 294 (368)
T 1fch_A 240 FTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGIS 294 (368)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 999843 3 57789999999999999999999999988742 2234455444443
No 22
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.27 E-value=2.4e-10 Score=78.60 Aligned_cols=122 Identities=12% Similarity=0.046 Sum_probs=88.7
Q ss_pred chHHHHhhccCC---CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 2 GFALEIFGNMKN---KDVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 2 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
++|++.|+...+ .+..++..+...|.+.|++++|...|++..+ .+...+..+...+.+.|++++|...+++..+
T Consensus 74 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 153 (243)
T 2q7f_A 74 ERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVE 153 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 456666666553 3667788888888888888888888887653 4666778888888888888888888888877
Q ss_pred CCCCCChHHHHHhhh--------------------ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 76 SNIRRDEFTTVRILT--------------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 76 ~~~~p~~~~~~~l~~--------------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
.... +...+..+.. ..+.+..++..+...|.+.|++++|...++...+
T Consensus 154 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 154 LNEN-DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HCTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred hCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 5321 2223322221 2234577888999999999999999999999854
No 23
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.25 E-value=4.7e-10 Score=76.79 Aligned_cols=141 Identities=15% Similarity=0.022 Sum_probs=118.1
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhh
Q 045555 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT 90 (175)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 90 (175)
++...+..+...+.+.|++++|...|++..+ .+...+..+...+.+.|++++|+..|++..+.. |+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~--------- 71 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART--PR--------- 71 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT---------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC---------
Confidence 4667888999999999999999999998654 367789999999999999999999999999854 22
Q ss_pred ccCcchhHHHHHHHHHHhc-----------CCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 91 TFNNDIFVGIALIDMYCKC-----------GDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 91 ~~~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
+...+..+...+.+. |++++|...|++..+ | +...|..+...+...|++++|.+.|++..+.
T Consensus 72 ----~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 72 ----YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALAL 147 (217)
T ss_dssp ----CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 345567888899999 999999999999854 4 5778999999999999999999999999987
Q ss_pred CCCCcHHHHHHHHhh
Q 045555 157 SIRLDEVTYVGVLSA 171 (175)
Q Consensus 157 g~~p~~~t~~~ll~~ 171 (175)
. .+...+..+-..
T Consensus 148 ~--~~~~~~~~la~~ 160 (217)
T 2pl2_A 148 E--DTPEIRSALAEL 160 (217)
T ss_dssp C--CCHHHHHHHHHH
T ss_pred c--cchHHHHHHHHH
Confidence 6 566666555443
No 24
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.25 E-value=6.3e-10 Score=75.46 Aligned_cols=152 Identities=13% Similarity=-0.047 Sum_probs=123.4
Q ss_pred chHHHHhhccCC---CcHHHHHHHHHHHHhc-CChhHHHHHhhcCCC----C-ChhHHHHHHHHHhccCChHHHHHHHHH
Q 045555 2 GFALEIFGNMKN---KDVISWTTIVSGYINR-GQVDIARQYFAQMPE----R-DYVLWTAMIDGYLRVNRFREALTLFRE 72 (175)
Q Consensus 2 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~----~-~~~~~~~li~~~~~~~~~~~a~~~~~~ 72 (175)
++|.+.|+...+ .+..++..+...+... |++++|...|+.+.+ | +...+..+...+.+.|++++|...+++
T Consensus 59 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 138 (225)
T 2vq2_A 59 DKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKR 138 (225)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 467777777654 4678899999999999 999999999998765 2 356788999999999999999999999
Q ss_pred hHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC----CChhhHHHHHHHHHhcCChhHHHH
Q 045555 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR----KDKFTWTAMIVGLAISGHGDTALD 148 (175)
Q Consensus 73 m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~ 148 (175)
..+.. | .+...+..+...|.+.|++++|.+.++...+ .+...+..+...+...|+.++|..
T Consensus 139 ~~~~~--~-------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 203 (225)
T 2vq2_A 139 SLAAQ--P-------------QFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYE 203 (225)
T ss_dssp HHHHS--T-------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhC--C-------------CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 98853 2 2344567899999999999999999999843 466778888888899999999999
Q ss_pred HHHHHHHCCCCCcHHHHHHHHh
Q 045555 149 MFSQMLRASIRLDEVTYVGVLS 170 (175)
Q Consensus 149 ~~~~m~~~g~~p~~~t~~~ll~ 170 (175)
.++.+.+. .|+......++.
T Consensus 204 ~~~~~~~~--~p~~~~~~~~l~ 223 (225)
T 2vq2_A 204 YEAQLQAN--FPYSEELQTVLT 223 (225)
T ss_dssp HHHHHHHH--CTTCHHHHHHHC
T ss_pred HHHHHHHh--CCCCHHHHHHhc
Confidence 99998764 466655555543
No 25
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.25 E-value=3.3e-09 Score=69.56 Aligned_cols=140 Identities=14% Similarity=0.073 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhcc
Q 045555 16 VISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTF 92 (175)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 92 (175)
...+..+...+.+.|++++|...|+.+.+ .+...+..+...+...|++++|...+++..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------- 72 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--------------- 72 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------
Confidence 45678888999999999999999999875 367789999999999999999999999998863
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHH
Q 045555 93 NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR---KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVL 169 (175)
Q Consensus 93 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 169 (175)
+.+...+..+...+...|++++|.+.++.... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 73 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 151 (186)
T 3as5_A 73 PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIA 151 (186)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHH
Confidence 22345567889999999999999999999843 367788889999999999999999999998753 22344554444
Q ss_pred hh
Q 045555 170 SA 171 (175)
Q Consensus 170 ~~ 171 (175)
..
T Consensus 152 ~~ 153 (186)
T 3as5_A 152 FS 153 (186)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.24 E-value=1.2e-09 Score=78.14 Aligned_cols=169 Identities=10% Similarity=0.034 Sum_probs=114.0
Q ss_pred chHHHHhhccCC--Cc--HHHHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCC
Q 045555 2 GFALEIFGNMKN--KD--VISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 77 (175)
Q Consensus 2 ~~A~~~~~~m~~--~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 77 (175)
++|+..++.... |+ ......+.++|...|+++.|...++....|+..++..+...+...++.++|++.++++...+
T Consensus 16 ~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~ 95 (291)
T 3mkr_A 16 QQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRS 95 (291)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc
Confidence 356666665544 33 24556778999999999999998888666777888999999999999999999999999887
Q ss_pred CCCChHHHHHhhh----------------ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--CChhhH---HHHHHH
Q 045555 78 IRRDEFTTVRILT----------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--KDKFTW---TAMIVG 136 (175)
Q Consensus 78 ~~p~~~~~~~l~~----------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~---~~li~~ 136 (175)
..|+...+...+. .-+.+...+..+...|.+.|++++|.+.|+.+.+ |+.... ..++..
T Consensus 96 ~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l 175 (291)
T 3mkr_A 96 VDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSL 175 (291)
T ss_dssp CCCSCHHHHHHHHHHHHHTTCHHHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH
Confidence 6676554433322 1134566677777777777777777777777743 332211 122233
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhh
Q 045555 137 LAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171 (175)
Q Consensus 137 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 171 (175)
+...|++++|..+|+++.+. .+.+...+..+-.+
T Consensus 176 ~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~ 209 (291)
T 3mkr_A 176 AAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAAC 209 (291)
T ss_dssp HHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHH
T ss_pred HhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHH
Confidence 34457777787777777765 33455555544333
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.23 E-value=1.3e-09 Score=77.97 Aligned_cols=169 Identities=14% Similarity=0.115 Sum_probs=129.3
Q ss_pred chHHHHhhccCC---CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 2 GFALEIFGNMKN---KDVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 2 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
++|.++|+.+.+ .+..++..+...+.+.|++++|...|++..+ .+..++..+...+...|++++|...+++..+
T Consensus 38 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 117 (327)
T 3cv0_A 38 AEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLL 117 (327)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 568888887764 3677899999999999999999999998763 4677899999999999999999999999987
Q ss_pred CCCCCChHH----------------------------------HHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 045555 76 SNIRRDEFT----------------------------------TVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWK 121 (175)
Q Consensus 76 ~~~~p~~~~----------------------------------~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 121 (175)
......... +..++...+.+...+..+...|.+.|++++|.+.++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 197 (327)
T 3cv0_A 118 SQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRR 197 (327)
T ss_dssp TSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 642211111 1111113344677888999999999999999999998
Q ss_pred hcC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhh
Q 045555 122 MLR--K-DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171 (175)
Q Consensus 122 ~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 171 (175)
..+ | +...|..+...+...|++++|.+.|++..+.. +.+..++..+-..
T Consensus 198 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 198 AVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVS 249 (327)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 843 3 57788999999999999999999999988753 2234555554443
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.23 E-value=2.5e-10 Score=83.45 Aligned_cols=155 Identities=12% Similarity=0.005 Sum_probs=109.2
Q ss_pred chHHHHhhccCC---CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC--CC-----------hhHHHHHHHHHhccCChHH
Q 045555 2 GFALEIFGNMKN---KDVISWTTIVSGYINRGQVDIARQYFAQMPE--RD-----------YVLWTAMIDGYLRVNRFRE 65 (175)
Q Consensus 2 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~-----------~~~~~~li~~~~~~~~~~~ 65 (175)
++|++.|+...+ .+..++..+...|.+.|++++|...|+++.+ |+ ...+..+...+.+.|++++
T Consensus 116 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 195 (365)
T 4eqf_A 116 QAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEG 195 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHH
Confidence 467788887764 3678899999999999999999999988753 21 1122334556666677777
Q ss_pred HHHHHHHhHhCCCC-CChHHHHHhhh--------------------ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 66 ALTLFREMQTSNIR-RDEFTTVRILT--------------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 66 a~~~~~~m~~~~~~-p~~~~~~~l~~--------------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
|+..|+++.+.... ++...+..+-. ..+.+..++..+..+|.+.|++++|.+.|++..+
T Consensus 196 A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 275 (365)
T 4eqf_A 196 VKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALE 275 (365)
T ss_dssp HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77777777664322 12333333222 2234577889999999999999999999999843
Q ss_pred --C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 125 --K-DKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 125 --~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
| +..+|..+...|.+.|++++|.+.|++..+.
T Consensus 276 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 276 IQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4 5788999999999999999999999998863
No 29
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.22 E-value=8e-10 Score=79.18 Aligned_cols=58 Identities=19% Similarity=0.115 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhhcC---CChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 045555 97 FVGIALIDMYCKCGDVEKAQRVFWKMLR---KDKFTWTAMIVGLAISGHGDTALDMFSQML 154 (175)
Q Consensus 97 ~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (175)
.++..+...|.+.|++++|...|+...+ .+...|..+...+.+.|++++|.+.|++..
T Consensus 237 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 237 PLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3444455555555555555555554421 134444455555555555555555555544
No 30
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.22 E-value=3.4e-09 Score=71.68 Aligned_cols=127 Identities=10% Similarity=-0.017 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcc
Q 045555 16 VISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNND 95 (175)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 95 (175)
...+..+...+.+.|++++|...|++...++...|..+...+.+.|++++|+..|++..+.. | .+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~-------------~~ 70 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--K-------------HL 70 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-------------TC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--c-------------cc
Confidence 34566778888999999999999999998899999999999999999999999999998854 2 23
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-Ch----------------hhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 96 IFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DK----------------FTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 96 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~----------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
...+..+..+|.+.|++++|.+.|+...+ | +. ..|..+...|...|++++|.+.|++..+.
T Consensus 71 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 71 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 45567899999999999999999999854 2 22 67888999999999999999999999875
Q ss_pred C
Q 045555 157 S 157 (175)
Q Consensus 157 g 157 (175)
.
T Consensus 151 ~ 151 (213)
T 1hh8_A 151 K 151 (213)
T ss_dssp C
T ss_pred C
Confidence 4
No 31
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.21 E-value=4.4e-10 Score=77.78 Aligned_cols=155 Identities=10% Similarity=0.020 Sum_probs=122.5
Q ss_pred chHHHHhhccCC--Cc--------HHHHHHHHHHHHhcCChhHHHHHhhcCCC--------------------------C
Q 045555 2 GFALEIFGNMKN--KD--------VISWTTIVSGYINRGQVDIARQYFAQMPE--------------------------R 45 (175)
Q Consensus 2 ~~A~~~~~~m~~--~~--------~~~~~~li~~~~~~~~~~~a~~~~~~m~~--------------------------~ 45 (175)
++|.+.|+...+ |+ ..++..+...|.+.|++++|...|++..+ .
T Consensus 55 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 134 (258)
T 3uq3_A 55 ETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYV 134 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHc
Confidence 456677776654 22 57899999999999999999999998654 1
Q ss_pred ---ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 045555 46 ---DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM 122 (175)
Q Consensus 46 ---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 122 (175)
+...+..+...+...|++++|+..+++..+.. +.+...+..+...|.+.|++++|.+.|+..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA---------------PEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---------------cccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34568888889999999999999999998854 223456678999999999999999999998
Q ss_pred cC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCcHHHHHHHHhh
Q 045555 123 LR--K-DKFTWTAMIVGLAISGHGDTALDMFSQMLRAS----IRLDEVTYVGVLSA 171 (175)
Q Consensus 123 ~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~~~t~~~ll~~ 171 (175)
.+ | +...|..+...+...|++++|.+.|++..+.. ..|+.......+.-
T Consensus 200 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 200 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 43 3 57789999999999999999999999987642 22665555444443
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.20 E-value=9.2e-10 Score=76.16 Aligned_cols=167 Identities=13% Similarity=0.124 Sum_probs=129.0
Q ss_pred chHHHHhhccCC--CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC--C-C-------hhHHHHHHHHHhccCChHHHHHH
Q 045555 2 GFALEIFGNMKN--KDVISWTTIVSGYINRGQVDIARQYFAQMPE--R-D-------YVLWTAMIDGYLRVNRFREALTL 69 (175)
Q Consensus 2 ~~A~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~-------~~~~~~li~~~~~~~~~~~a~~~ 69 (175)
++|++.|+...+ ++..++..+...|.+.|++++|...|+...+ | + ..+|..+...+.+.|++++|+..
T Consensus 22 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 101 (258)
T 3uq3_A 22 DEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEY 101 (258)
T ss_dssp HHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 456666665543 6788999999999999999999999998764 2 1 57899999999999999999999
Q ss_pred HHHhHhCCCCCChHHHHHhhh-------------ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC---CChhhHHHH
Q 045555 70 FREMQTSNIRRDEFTTVRILT-------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR---KDKFTWTAM 133 (175)
Q Consensus 70 ~~~m~~~~~~p~~~~~~~l~~-------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l 133 (175)
|++..+.. |+...+..+-. ..+.+...+..+...+...|++++|...|+...+ .+...|..+
T Consensus 102 ~~~a~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 179 (258)
T 3uq3_A 102 YQKSLTEH--RTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNR 179 (258)
T ss_dssp HHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHhcC--chhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 99999854 43332222111 2233466788999999999999999999999843 367889999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhh
Q 045555 134 IVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171 (175)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 171 (175)
...+...|++++|.+.|++..+.. +.+...+..+-..
T Consensus 180 ~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~ 216 (258)
T 3uq3_A 180 AAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 216 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHH
Confidence 999999999999999999998753 2234455444333
No 33
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.20 E-value=2.8e-10 Score=90.85 Aligned_cols=137 Identities=10% Similarity=0.060 Sum_probs=71.0
Q ss_pred hHHHHhhccCC--C-cHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhC
Q 045555 3 FALEIFGNMKN--K-DVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTS 76 (175)
Q Consensus 3 ~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (175)
+|++.|++..+ | +..+|+.+...|.+.|++++|...|++..+ .+...|+.+...|.+.|++++|++.|++..+.
T Consensus 27 eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l 106 (723)
T 4gyw_A 27 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI 106 (723)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44444444432 2 344555555555555555555555554432 23444555555555555555555555555442
Q ss_pred CCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 045555 77 NIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMFSQM 153 (175)
Q Consensus 77 ~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m 153 (175)
. | -+...++.+..+|.+.|++++|.+.|++..+ | +...|..+...|...|++++|.+.+++.
T Consensus 107 ~--P-------------~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~ka 171 (723)
T 4gyw_A 107 N--P-------------AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKL 171 (723)
T ss_dssp C--T-------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred C--C-------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHH
Confidence 1 1 1233445566666666666666666665532 2 4455566666666666666666555554
Q ss_pred H
Q 045555 154 L 154 (175)
Q Consensus 154 ~ 154 (175)
.
T Consensus 172 l 172 (723)
T 4gyw_A 172 V 172 (723)
T ss_dssp H
T ss_pred H
Confidence 3
No 34
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.19 E-value=9.6e-10 Score=78.78 Aligned_cols=153 Identities=14% Similarity=0.071 Sum_probs=89.2
Q ss_pred hHHHHhhccCC--C-cHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccC-ChHHHHHHHHHhHh
Q 045555 3 FALEIFGNMKN--K-DVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVN-RFREALTLFREMQT 75 (175)
Q Consensus 3 ~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~ 75 (175)
+|+++|+.+.+ | +...+..++..+.+.|++++|..+++++.+ .+...|..+...+...| ++++|...|++..+
T Consensus 40 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~ 119 (330)
T 3hym_B 40 MCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATT 119 (330)
T ss_dssp HHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44555554432 1 233344444555555555555555554432 23444555555555555 55555555555544
Q ss_pred CCCCCChHHHHHhhh--------------------ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC---CChhhHHH
Q 045555 76 SNIRRDEFTTVRILT--------------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR---KDKFTWTA 132 (175)
Q Consensus 76 ~~~~p~~~~~~~l~~--------------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ 132 (175)
.... +...+..+-. ..+.+...+..+...|...|++++|.+.++...+ .+...+..
T Consensus 120 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 198 (330)
T 3hym_B 120 LEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHE 198 (330)
T ss_dssp TCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred hCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHH
Confidence 3211 1111111111 1122345556788889999999999999998854 25678888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC
Q 045555 133 MIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
+...+...|++++|.+.+++..+.
T Consensus 199 l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 199 VGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH
Confidence 999999999999999999888763
No 35
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.17 E-value=7.1e-10 Score=77.62 Aligned_cols=140 Identities=11% Similarity=-0.011 Sum_probs=112.9
Q ss_pred chHHHHhhccCC-------CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHH
Q 045555 2 GFALEIFGNMKN-------KDVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFR 71 (175)
Q Consensus 2 ~~A~~~~~~m~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~ 71 (175)
++|++.|+.+.+ .+..++..+...+.+.|++++|...|++..+ .+..+|..+...+.+.|++++|+..|+
T Consensus 22 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 101 (275)
T 1xnf_A 22 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 101 (275)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 567888887765 1567899999999999999999999998763 467889999999999999999999999
Q ss_pred HhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--CChhhHHHHHHHHHhcCChhHHHHH
Q 045555 72 EMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--KDKFTWTAMIVGLAISGHGDTALDM 149 (175)
Q Consensus 72 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~ 149 (175)
+..+.. | .+...+..+...|.+.|++++|.+.|+...+ |+.......+..+...|++++|...
T Consensus 102 ~al~~~--~-------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 166 (275)
T 1xnf_A 102 SVLELD--P-------------TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEV 166 (275)
T ss_dssp HHHHHC--T-------------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHhcC--c-------------cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHH
Confidence 999853 2 2345567899999999999999999999843 5544445555555677899999999
Q ss_pred HHHHHHC
Q 045555 150 FSQMLRA 156 (175)
Q Consensus 150 ~~~m~~~ 156 (175)
+++....
T Consensus 167 ~~~~~~~ 173 (275)
T 1xnf_A 167 LKQHFEK 173 (275)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9777654
No 36
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.16 E-value=2.8e-09 Score=73.79 Aligned_cols=139 Identities=15% Similarity=0.028 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhh--
Q 045555 16 VISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT-- 90 (175)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~-- 90 (175)
...+..+...+...|++++|...|+++.+ .+...+..+...+.+.|++++|.+.+++..+.... +...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHH
Confidence 67789999999999999999999998763 46778999999999999999999999999886422 2222222211
Q ss_pred -----------------c--cCc-chhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHH
Q 045555 91 -----------------T--FNN-DIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTAL 147 (175)
Q Consensus 91 -----------------~--~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~ 147 (175)
. ..| +...+..+...|.+.|++++|.+.|++..+ | +...+..+...+...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 1 222 345556666666666667666666666532 2 4556666666666777777777
Q ss_pred HHHHHHHH
Q 045555 148 DMFSQMLR 155 (175)
Q Consensus 148 ~~~~~m~~ 155 (175)
+.++++.+
T Consensus 196 ~~~~~~~~ 203 (252)
T 2ho1_A 196 QYYDLFAQ 203 (252)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 77766654
No 37
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.16 E-value=1.7e-10 Score=86.44 Aligned_cols=104 Identities=11% Similarity=0.050 Sum_probs=36.9
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCc
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN 94 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 94 (175)
++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+.
T Consensus 93 ~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~-------------------- 149 (449)
T 1b89_A 93 ESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-------------------- 149 (449)
T ss_dssp ----------------CHHHHTTTTT---CC----------------CTTTHHHHHHHTT--------------------
T ss_pred cchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh--------------------
Confidence 34455555556666666555555543 2444455555555555555555555555441
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhcCChhHH
Q 045555 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTA 146 (175)
Q Consensus 95 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 146 (175)
.|..+++++.+.|++++|.+.+.++. ++.+|..++.+|+..|+++.|
T Consensus 150 ---n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA 196 (449)
T 1b89_A 150 ---NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLA 196 (449)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHH
T ss_pred ---hHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHH
Confidence 23455555555555555555555552 445555555554444444444
No 38
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.15 E-value=2.1e-09 Score=85.80 Aligned_cols=139 Identities=12% Similarity=0.090 Sum_probs=118.0
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhc
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT 91 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (175)
+..+++.+...|.+.|++++|...|++..+ .+..+|+.|...|.+.|++++|++.|++.++.. |+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~---------- 75 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PT---------- 75 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC----------
Confidence 567899999999999999999999998764 467889999999999999999999999998853 32
Q ss_pred cCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc-HHHHHH
Q 045555 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD-EVTYVG 167 (175)
Q Consensus 92 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ 167 (175)
+...|..+..+|.+.|++++|.+.|++..+ | +...|+.+...|...|++++|.+.|++.++. .|+ ...+..
T Consensus 76 ---~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~ 150 (723)
T 4gyw_A 76 ---FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCN 150 (723)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHH
T ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhh
Confidence 355678899999999999999999999844 4 6789999999999999999999999999874 454 344444
Q ss_pred HHh
Q 045555 168 VLS 170 (175)
Q Consensus 168 ll~ 170 (175)
+..
T Consensus 151 L~~ 153 (723)
T 4gyw_A 151 LAH 153 (723)
T ss_dssp HHH
T ss_pred hhh
Confidence 433
No 39
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.15 E-value=5.1e-10 Score=81.63 Aligned_cols=137 Identities=18% Similarity=0.170 Sum_probs=108.3
Q ss_pred chHHHHhhccCC--C---cHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHh
Q 045555 2 GFALEIFGNMKN--K---DVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREM 73 (175)
Q Consensus 2 ~~A~~~~~~m~~--~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m 73 (175)
++|++.|+.+.+ | +..++..+...|.+.|++++|...|++..+ .+..+|..+...+.+.|++++|+..|++.
T Consensus 198 ~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 277 (368)
T 1fch_A 198 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRA 277 (368)
T ss_dssp HHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 467777776654 4 477888899999999999999999988653 35678888899999999999999999998
Q ss_pred HhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-C-----------hhhHHHHHHHHHh
Q 045555 74 QTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-D-----------KFTWTAMIVGLAI 139 (175)
Q Consensus 74 ~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~-----------~~~~~~li~~~~~ 139 (175)
.+.. | .+...+..+..+|.+.|++++|...|+...+ | + ..+|..+..+|..
T Consensus 278 l~~~--~-------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 342 (368)
T 1fch_A 278 LELQ--P-------------GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSM 342 (368)
T ss_dssp HHHC--T-------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHH
T ss_pred HHhC--C-------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHH
Confidence 8753 2 2345567888899999999999999988743 2 2 5788889999999
Q ss_pred cCChhHHHHHHHHH
Q 045555 140 SGHGDTALDMFSQM 153 (175)
Q Consensus 140 ~g~~~~a~~~~~~m 153 (175)
.|+.++|..++++-
T Consensus 343 ~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 343 LGQSDAYGAADARD 356 (368)
T ss_dssp HTCGGGHHHHHTTC
T ss_pred hCChHhHHHhHHHH
Confidence 99999998887643
No 40
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.14 E-value=5.2e-10 Score=80.06 Aligned_cols=138 Identities=15% Similarity=0.136 Sum_probs=110.0
Q ss_pred chHHHHhhccCC---CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 2 GFALEIFGNMKN---KDVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 2 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
++|.+.+++..+ .+..++..+...|.+.|++++|...+++..+ .+..++..+...+.+.|++++|...+++..+
T Consensus 155 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 155 RECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456677776654 3677888999999999999999999988653 3567888999999999999999999999887
Q ss_pred CCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--CC-------------hhhHHHHHHHHHhc
Q 045555 76 SNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--KD-------------KFTWTAMIVGLAIS 140 (175)
Q Consensus 76 ~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-------------~~~~~~li~~~~~~ 140 (175)
.. | .+...+..+...|.+.|++++|.+.|+.... |+ ...|..+..++.+.
T Consensus 235 ~~--~-------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (327)
T 3cv0_A 235 IN--P-------------GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM 299 (327)
T ss_dssp HC--T-------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHT
T ss_pred cC--C-------------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhc
Confidence 53 2 2344557888899999999999999988733 33 56888889999999
Q ss_pred CChhHHHHHHHHHH
Q 045555 141 GHGDTALDMFSQML 154 (175)
Q Consensus 141 g~~~~a~~~~~~m~ 154 (175)
|++++|.+++++..
T Consensus 300 g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 300 NRPDLVELTYAQNV 313 (327)
T ss_dssp TCHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHHHH
Confidence 99999998887644
No 41
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.12 E-value=3.7e-09 Score=76.41 Aligned_cols=155 Identities=14% Similarity=0.088 Sum_probs=113.5
Q ss_pred chHHHHhhccCC---CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 2 GFALEIFGNMKN---KDVISWTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 2 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
++|++.|+...+ .+..++..+...+.+.|++++|...|+...+ | +...+..+...+.+.|++++|...|++..+
T Consensus 20 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 99 (359)
T 3ieg_A 20 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK 99 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 578888887764 3678999999999999999999999998763 3 667899999999999999999999999988
Q ss_pred CCCC--CChHHHHHh--------------------------------hhccCcchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 045555 76 SNIR--RDEFTTVRI--------------------------------LTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWK 121 (175)
Q Consensus 76 ~~~~--p~~~~~~~l--------------------------------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 121 (175)
.... .+...+..+ +...+.+...+..+...+.+.|++++|...++.
T Consensus 100 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 179 (359)
T 3ieg_A 100 SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKA 179 (359)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5420 122222111 002233456667777777777777777777777
Q ss_pred hcC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 122 MLR---KDKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 122 ~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
..+ .+...|..+...+...|++++|.+.|++..+.
T Consensus 180 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 180 ASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp HHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 643 25667777777777777777777777777653
No 42
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.12 E-value=2.4e-09 Score=81.27 Aligned_cols=76 Identities=9% Similarity=0.137 Sum_probs=68.3
Q ss_pred chHHHHhhccCC--CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhHhC
Q 045555 2 GFALEIFGNMKN--KDVISWTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQTS 76 (175)
Q Consensus 2 ~~A~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (175)
++|++.|+++.+ ||..+|..+..+|.+.|++++|...|+++.+ | +..+|..+..++.+.|++++|...|+++.+.
T Consensus 23 ~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 102 (514)
T 2gw1_A 23 DDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLN 102 (514)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 578888888875 8999999999999999999999999998763 3 6678999999999999999999999999876
Q ss_pred C
Q 045555 77 N 77 (175)
Q Consensus 77 ~ 77 (175)
+
T Consensus 103 ~ 103 (514)
T 2gw1_A 103 G 103 (514)
T ss_dssp S
T ss_pred C
Confidence 5
No 43
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.12 E-value=7.7e-10 Score=84.32 Aligned_cols=140 Identities=13% Similarity=0.038 Sum_probs=95.5
Q ss_pred chHHHHhhccCC--C-cHHHHHHHHHHHHhcCChhHHHHHhhcCCC--CChhHHHHHHHHHhcc---------CChHHHH
Q 045555 2 GFALEIFGNMKN--K-DVISWTTIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRV---------NRFREAL 67 (175)
Q Consensus 2 ~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~---------~~~~~a~ 67 (175)
++|++.|++..+ | +..+|..+...|.+.|++++|...|++..+ |+...+..+...+... |++++|+
T Consensus 120 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~ 199 (474)
T 4abn_A 120 PEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSV 199 (474)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHH
Confidence 345555554433 2 345555566666666666666666555432 4445555555555555 5666666
Q ss_pred HHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhc--------CCHHHHHHHHHhhcC--C----ChhhHHHH
Q 045555 68 TLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKC--------GDVEKAQRVFWKMLR--K----DKFTWTAM 133 (175)
Q Consensus 68 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~--------~~~~~a~~~~~~~~~--~----~~~~~~~l 133 (175)
..|++..+.. +.+...|..+..+|... |++++|.+.|+...+ | +...|..+
T Consensus 200 ~~~~~al~~~---------------p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l 264 (474)
T 4abn_A 200 RQAKLAVQMD---------------VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNR 264 (474)
T ss_dssp HHHHHHHHHC---------------TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHH
T ss_pred HHHHHHHHhC---------------CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHH
Confidence 6666555532 23456677888999888 999999999999843 4 67789999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC
Q 045555 134 IVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
...|...|++++|.+.|++..+.
T Consensus 265 g~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 265 ATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999998874
No 44
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.10 E-value=4.1e-09 Score=80.55 Aligned_cols=139 Identities=9% Similarity=0.007 Sum_probs=87.1
Q ss_pred chHHHHhhccCC--Cc--------HHHHHHHHHHHHhcCChhHHHHHhhcCCC--CChhHHHHHHHHHhccCChHHHHHH
Q 045555 2 GFALEIFGNMKN--KD--------VISWTTIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALTL 69 (175)
Q Consensus 2 ~~A~~~~~~m~~--~~--------~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~ 69 (175)
++|..+|+.+.+ |+ ..++..+...+...|++++|...|+...+ |+...|..+...+...|++++|...
T Consensus 219 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 298 (537)
T 3fp2_A 219 TKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKF 298 (537)
T ss_dssp HHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHH
Confidence 356667776655 33 33566777778888888888888887763 5667788888888888888888888
Q ss_pred HHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHH
Q 045555 70 FREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTA 146 (175)
Q Consensus 70 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a 146 (175)
+++..+... + +..++..+...|...|++++|...|+...+ | +...|..+...+...|++++|
T Consensus 299 ~~~~~~~~~--~-------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 363 (537)
T 3fp2_A 299 FQKAVDLNP--E-------------YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTES 363 (537)
T ss_dssp HHHHHHHCT--T-------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhccCC--C-------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 888877542 1 223334455555555555555555555422 2 344455555555555555555
Q ss_pred HHHHHHHHH
Q 045555 147 LDMFSQMLR 155 (175)
Q Consensus 147 ~~~~~~m~~ 155 (175)
.+.++++.+
T Consensus 364 ~~~~~~~~~ 372 (537)
T 3fp2_A 364 EAFFNETKL 372 (537)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 45
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.08 E-value=2.3e-09 Score=81.93 Aligned_cols=140 Identities=15% Similarity=0.093 Sum_probs=120.1
Q ss_pred chHHHHhhccCC--CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhC
Q 045555 2 GFALEIFGNMKN--KDVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTS 76 (175)
Q Consensus 2 ~~A~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (175)
++|.+.|+...+ |+..++..+...+.+.|++++|...|++..+ .+..+|..+...+...|++++|+..|++..+.
T Consensus 260 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 260 LDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 467777777764 7788899999999999999999999998763 46778999999999999999999999999885
Q ss_pred CCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 045555 77 NIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMFSQM 153 (175)
Q Consensus 77 ~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m 153 (175)
. | .+...+..+...|.+.|++++|...++...+ | +...|..+...+...|++++|.+.|+++
T Consensus 340 ~--~-------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 340 N--P-------------ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp C--T-------------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred C--C-------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4 2 2344567899999999999999999999843 3 6778999999999999999999999998
Q ss_pred HHC
Q 045555 154 LRA 156 (175)
Q Consensus 154 ~~~ 156 (175)
.+.
T Consensus 405 ~~~ 407 (537)
T 3fp2_A 405 KRL 407 (537)
T ss_dssp HHH
T ss_pred HHc
Confidence 764
No 46
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.08 E-value=9e-09 Score=73.94 Aligned_cols=153 Identities=11% Similarity=0.149 Sum_probs=96.7
Q ss_pred chHHHHhhccCC---C-cHHHHHHHHHHHHhcCChhHHHHHhhcCCC--C-Chh-HHHHHHHHHhccCChHHHHHHHHHh
Q 045555 2 GFALEIFGNMKN---K-DVISWTTIVSGYINRGQVDIARQYFAQMPE--R-DYV-LWTAMIDGYLRVNRFREALTLFREM 73 (175)
Q Consensus 2 ~~A~~~~~~m~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~-~~~~li~~~~~~~~~~~a~~~~~~m 73 (175)
++|+.+|+...+ | +...|..++..+.+.|++++|..+|++..+ | +.. .|..+...+.+.|++++|..+|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 578888887654 4 566899999999999999999999998764 4 343 7999999999999999999999999
Q ss_pred HhCCCCCChHHHHHh---------------------hhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC----C---
Q 045555 74 QTSNIRRDEFTTVRI---------------------LTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR----K--- 125 (175)
Q Consensus 74 ~~~~~~p~~~~~~~l---------------------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~--- 125 (175)
.+.+. ++...|... +...+.+...|..++..+.+.|++++|..+|+.... +
T Consensus 161 ~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~ 239 (308)
T 2ond_A 161 REDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 239 (308)
T ss_dssp HTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred HhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHH
Confidence 88642 122222110 001122334444455555555555555555555432 1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 126 DKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
....|..++..+.+.|+.++|..+++++.+
T Consensus 240 ~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 240 SGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 223444555555555555555555555444
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.07 E-value=1.7e-08 Score=70.53 Aligned_cols=152 Identities=10% Similarity=-0.035 Sum_probs=117.8
Q ss_pred chHHHHhhccCC---CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 2 GFALEIFGNMKN---KDVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 2 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
++|.+.|+...+ .+..++..+...|.+.|++++|...|++..+ .+...+..+...+.+.|++++|...|+++.+
T Consensus 60 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 60 ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 467788887764 3688999999999999999999999998764 3678899999999999999999999999998
Q ss_pred CCCCCChHHHH--------------------HhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCC-------hh
Q 045555 76 SNIRRDEFTTV--------------------RILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKD-------KF 128 (175)
Q Consensus 76 ~~~~p~~~~~~--------------------~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-------~~ 128 (175)
.. |+..... ..+...+++...+ .+...+...++.++|...+......+ ..
T Consensus 140 ~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 216 (275)
T 1xnf_A 140 DD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSE 216 (275)
T ss_dssp HC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred hC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccH
Confidence 54 3332111 1111233333444 36666777778888888888875542 47
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 129 TWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
.|..+...|.+.|++++|.+.|++..+.
T Consensus 217 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 217 TNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 8888999999999999999999999875
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.06 E-value=3.5e-09 Score=74.06 Aligned_cols=140 Identities=11% Similarity=0.074 Sum_probs=105.2
Q ss_pred chHHHHhhccCC--C-cHHHHHHHHHHHHhcCChhHHHHHhhcCCC--CC----hhHHHHHHHHHhccCChHHHHHHHHH
Q 045555 2 GFALEIFGNMKN--K-DVISWTTIVSGYINRGQVDIARQYFAQMPE--RD----YVLWTAMIDGYLRVNRFREALTLFRE 72 (175)
Q Consensus 2 ~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~ 72 (175)
++|++.|+...+ | +..++..+...|.+.|++++|...|++..+ ++ ...|..+...+.+.|++++|+..|++
T Consensus 20 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 99 (272)
T 3u4t_A 20 AEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQA 99 (272)
T ss_dssp HHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 467777777654 3 455788888899999999999999887654 22 22478888889999999999999999
Q ss_pred hHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHH
Q 045555 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDM 149 (175)
Q Consensus 73 m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~ 149 (175)
..+.. +.+...+..+...|.+.|++++|...|++..+ | +...|..+...+...+++++|.+.
T Consensus 100 a~~~~---------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 100 AVDRD---------------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HHHHS---------------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcC---------------cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88853 22344567888888999999999999988854 3 556666666344445688888888
Q ss_pred HHHHHHC
Q 045555 150 FSQMLRA 156 (175)
Q Consensus 150 ~~~m~~~ 156 (175)
|++..+.
T Consensus 165 ~~~a~~~ 171 (272)
T 3u4t_A 165 FVKVLEL 171 (272)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8888764
No 49
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.06 E-value=6.7e-09 Score=80.63 Aligned_cols=142 Identities=9% Similarity=0.028 Sum_probs=111.4
Q ss_pred CchHHHHhhccCC--C-cHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhH
Q 045555 1 MGFALEIFGNMKN--K-DVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQ 74 (175)
Q Consensus 1 ~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (175)
.++|.+.|++..+ | +...+..+...|.+.|++++|.+.|++..+ .+...+..+...+.+.|++++|.+.+++..
T Consensus 5 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 84 (568)
T 2vsy_A 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQAS 84 (568)
T ss_dssp ----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3678888888765 3 678899999999999999999999998764 367789999999999999999999999998
Q ss_pred hCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhc---CChhHHHH
Q 045555 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAIS---GHGDTALD 148 (175)
Q Consensus 75 ~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~---g~~~~a~~ 148 (175)
+.. | .+...+..+..+|.+.|++++|.+.|++..+ | +...+..+...+... |+.++|.+
T Consensus 85 ~~~--p-------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~ 149 (568)
T 2vsy_A 85 DAA--P-------------EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSA 149 (568)
T ss_dssp HHC--T-------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred hcC--C-------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHH
Confidence 854 2 2345667899999999999999999999843 3 677889999999999 99999999
Q ss_pred HHHHHHHCC
Q 045555 149 MFSQMLRAS 157 (175)
Q Consensus 149 ~~~~m~~~g 157 (175)
.+++..+.+
T Consensus 150 ~~~~al~~~ 158 (568)
T 2vsy_A 150 QVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhcC
Confidence 999998754
No 50
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.04 E-value=8.1e-09 Score=74.60 Aligned_cols=122 Identities=11% Similarity=0.051 Sum_probs=93.4
Q ss_pred chHHHHhhccCC--C-cHHHHHHHHHHHHhcCChhHHHHHhhcCCC--C----ChhHHHHH------------HHHHhcc
Q 045555 2 GFALEIFGNMKN--K-DVISWTTIVSGYINRGQVDIARQYFAQMPE--R----DYVLWTAM------------IDGYLRV 60 (175)
Q Consensus 2 ~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~----~~~~~~~l------------i~~~~~~ 60 (175)
++|.+.|+...+ | +...+..+...+.+.|++++|...|+...+ | +...+..+ ...+...
T Consensus 54 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 133 (359)
T 3ieg_A 54 KAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDG 133 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 467778877664 4 678899999999999999999999998764 4 33344444 5788999
Q ss_pred CChHHHHHHHHHhHhCCCCCChHHHHHhhh--------------------ccCcchhHHHHHHHHHHhcCCHHHHHHHHH
Q 045555 61 NRFREALTLFREMQTSNIRRDEFTTVRILT--------------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120 (175)
Q Consensus 61 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~--------------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 120 (175)
|++++|+..++++.+.... +...+..+-. ..+.+...+..+...|.+.|++++|...|+
T Consensus 134 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 134 ADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999886432 2233322222 334467889999999999999999999999
Q ss_pred hhcC
Q 045555 121 KMLR 124 (175)
Q Consensus 121 ~~~~ 124 (175)
...+
T Consensus 213 ~a~~ 216 (359)
T 3ieg_A 213 ECLK 216 (359)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9854
No 51
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.03 E-value=4.5e-09 Score=79.74 Aligned_cols=74 Identities=15% Similarity=0.109 Sum_probs=40.1
Q ss_pred hHHHHhhccCC---CcHHHHHHHHHHHHhcCChhHHHHHhhcCC---CCChhHHHHHHHHHhccCChHHHHHHHHHhHhC
Q 045555 3 FALEIFGNMKN---KDVISWTTIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFREMQTS 76 (175)
Q Consensus 3 ~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (175)
+|.+.|+...+ .+..++..+...|.+.|++++|...|+... ..+...+..+...+.+.|++++|...++++.+.
T Consensus 288 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 367 (514)
T 2gw1_A 288 EYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK 367 (514)
T ss_dssp TGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44444444433 244455555666666666666666665543 124445555556666666666666666665553
No 52
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.03 E-value=4.1e-08 Score=67.16 Aligned_cols=131 Identities=10% Similarity=0.028 Sum_probs=110.4
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC----CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhh
Q 045555 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPE----RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89 (175)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 89 (175)
.|+..+......+.+.|++++|...|++..+ ++...+..+..++.+.|++++|+..|++..+.. |+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~-------- 74 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN--YN-------- 74 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CS--------
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--cc--------
Confidence 4667888999999999999999999997653 677777779999999999999999999999854 22
Q ss_pred hccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-Ch-------hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 045555 90 TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DK-------FTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159 (175)
Q Consensus 90 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 159 (175)
+...+..+...|.+.|++++|...|++..+ | +. ..|..+...+...|++++|.+.|++..+. .
T Consensus 75 -----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~ 147 (228)
T 4i17_A 75 -----LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--T 147 (228)
T ss_dssp -----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--S
T ss_pred -----hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--C
Confidence 345567899999999999999999999844 4 34 45788888899999999999999999864 5
Q ss_pred Cc
Q 045555 160 LD 161 (175)
Q Consensus 160 p~ 161 (175)
|+
T Consensus 148 p~ 149 (228)
T 4i17_A 148 SK 149 (228)
T ss_dssp CH
T ss_pred CC
Confidence 65
No 53
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.02 E-value=2.4e-09 Score=74.84 Aligned_cols=145 Identities=12% Similarity=0.045 Sum_probs=112.7
Q ss_pred chHHHHhhccCCC----cHHHHHHHHHHHHhcCChhHHHHHhhcCCC----------C-ChhHHHHHHHHHhccCChHHH
Q 045555 2 GFALEIFGNMKNK----DVISWTTIVSGYINRGQVDIARQYFAQMPE----------R-DYVLWTAMIDGYLRVNRFREA 66 (175)
Q Consensus 2 ~~A~~~~~~m~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----------~-~~~~~~~li~~~~~~~~~~~a 66 (175)
++|+++++....+ ...++..+...|...|++++|...|++..+ | ...++..+...+...|++++|
T Consensus 25 ~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 104 (283)
T 3edt_B 25 KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEA 104 (283)
T ss_dssp HHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHH
Confidence 3455555555422 466889999999999999999999998652 1 345789999999999999999
Q ss_pred HHHHHHhHhCCC---CCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC-----------ChhhHHH
Q 045555 67 LTLFREMQTSNI---RRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK-----------DKFTWTA 132 (175)
Q Consensus 67 ~~~~~~m~~~~~---~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~ 132 (175)
...+++..+... .|+ .+.....+..+...|...|++++|.+.|++..+. ...++..
T Consensus 105 ~~~~~~al~~~~~~~~~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 174 (283)
T 3edt_B 105 EPLCKRALEIREKVLGKF----------HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174 (283)
T ss_dssp HHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC----------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 999999977410 011 0112456678999999999999999999998431 3457888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC
Q 045555 133 MIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
+...|...|++++|.+.+++..+.
T Consensus 175 la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 175 LASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999998763
No 54
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.99 E-value=1.5e-08 Score=69.41 Aligned_cols=157 Identities=12% Similarity=0.063 Sum_probs=119.9
Q ss_pred chHHHHhhccCC----CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhH
Q 045555 2 GFALEIFGNMKN----KDVISWTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQ 74 (175)
Q Consensus 2 ~~A~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (175)
++|++.|+...+ ++...+..+..++.+.|++++|...|++..+ | +...|..+...+.+.|++++|+..+++..
T Consensus 24 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 103 (228)
T 4i17_A 24 AVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGI 103 (228)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 467777776653 5777888899999999999999999998763 3 56789999999999999999999999999
Q ss_pred hCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--CC---hhhHHHHHHHHHhcCCh------
Q 045555 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--KD---KFTWTAMIVGLAISGHG------ 143 (175)
Q Consensus 75 ~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~---~~~~~~li~~~~~~g~~------ 143 (175)
+.. |+...+. ..-...|..+...+.+.|++++|.+.|++..+ |+ ...|..+...|...|+.
T Consensus 104 ~~~--p~~~~~~------~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~ 175 (228)
T 4i17_A 104 KAV--PGNATIE------KLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKAT 175 (228)
T ss_dssp HHS--TTCHHHH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHC--CCcHHHH------HHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 853 3321110 00013567888999999999999999999965 33 45677788888888877
Q ss_pred ---------------------hHHHHHHHHHHHCCCCCcHHHHHHH
Q 045555 144 ---------------------DTALDMFSQMLRASIRLDEVTYVGV 168 (175)
Q Consensus 144 ---------------------~~a~~~~~~m~~~g~~p~~~t~~~l 168 (175)
++|.+.|++..+. .|+......+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~ 219 (228)
T 4i17_A 176 PLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL--SPNRTEIKQM 219 (228)
T ss_dssp GGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred hcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 8899999998874 5654444333
No 55
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.98 E-value=3.5e-08 Score=65.09 Aligned_cols=137 Identities=15% Similarity=0.239 Sum_probs=80.3
Q ss_pred hHHHHhhccCC---CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC--CChhHHHHHHHH--HhccCChHHHHHHHHHhHh
Q 045555 3 FALEIFGNMKN---KDVISWTTIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDG--YLRVNRFREALTLFREMQT 75 (175)
Q Consensus 3 ~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~ 75 (175)
+|...|+...+ .+...+..+...+.+.|++++|...|+...+ |+.. +..+... +.+.+...+|+..+++..+
T Consensus 24 ~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~~~~~~~~~~~~~~a~~~~~~al~ 102 (176)
T 2r5s_A 24 QALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNS-YKSLIAKLELHQQAAESPELKRLEQELA 102 (176)
T ss_dssp HHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHH-HHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChH-HHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 44455554443 2444555555555555555555555555543 2221 1111111 1111122234444444444
Q ss_pred CCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--CC---hhhHHHHHHHHHhcCChhHHHHHH
Q 045555 76 SNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--KD---KFTWTAMIVGLAISGHGDTALDMF 150 (175)
Q Consensus 76 ~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~---~~~~~~li~~~~~~g~~~~a~~~~ 150 (175)
.. +.+...+..+...+.+.|++++|...|++..+ |+ ...+..+...+...|+.++|...|
T Consensus 103 ~~---------------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 103 AN---------------PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HS---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred hC---------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 22 22456667888889999999999999998854 32 447888888999999999999998
Q ss_pred HHHHH
Q 045555 151 SQMLR 155 (175)
Q Consensus 151 ~~m~~ 155 (175)
++.+.
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 56
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.94 E-value=3.2e-08 Score=69.16 Aligned_cols=129 Identities=8% Similarity=-0.049 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhcc
Q 045555 16 VISWTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTF 92 (175)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 92 (175)
..........+.+.|++++|...|++..+ | +...+..+...+.+.|++++|+..+++..+.+..|+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------- 72 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKA---------- 72 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTC----------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhH----------
Confidence 34456677889999999999999998753 3 5568999999999999999999999999984322221
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 93 NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 93 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
....|..+...|.+.|++++|.+.|+...+ | +...|..+...|...|++++|.+.|++..+.
T Consensus 73 --~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 73 --KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP 137 (272)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred --HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence 123456899999999999999999999844 3 6789999999999999999999999998865
No 57
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.94 E-value=1.2e-08 Score=77.70 Aligned_cols=150 Identities=11% Similarity=0.021 Sum_probs=121.6
Q ss_pred hHHHHhhccCC---CcHHHHHHHHHHHHhcCCh-hHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 3 FALEIFGNMKN---KDVISWTTIVSGYINRGQV-DIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 3 ~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
+|++.++...+ .+...+..+...|...|++ ++|...|++..+ | +...|..+...|.+.|++++|...|++..+
T Consensus 86 ~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 165 (474)
T 4abn_A 86 KTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT 165 (474)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44555554443 3788999999999999999 999999998763 3 677899999999999999999999999998
Q ss_pred CCCCCChHHHHHhhhccCcchhHHHHHHHHHHhc---------CCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhc---
Q 045555 76 SNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKC---------GDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAIS--- 140 (175)
Q Consensus 76 ~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~--- 140 (175)
.. |+ ...+..+...|... |++++|.+.|++..+ | +...|..+..+|...
T Consensus 166 ~~--p~--------------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 229 (474)
T 4abn_A 166 HC--KN--------------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFN 229 (474)
T ss_dssp TC--CC--------------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred hC--CC--------------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 54 44 33446788899999 999999999999843 3 678899999999998
Q ss_pred -----CChhHHHHHHHHHHHCCCCC----cHHHHHHHHh
Q 045555 141 -----GHGDTALDMFSQMLRASIRL----DEVTYVGVLS 170 (175)
Q Consensus 141 -----g~~~~a~~~~~~m~~~g~~p----~~~t~~~ll~ 170 (175)
|++++|.+.|++..+. .| +...+..+-.
T Consensus 230 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~ 266 (474)
T 4abn_A 230 TGQNPKISQQALSAYAQAEKV--DRKASSNPDLHLNRAT 266 (474)
T ss_dssp TTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHH
T ss_pred hccccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHH
Confidence 9999999999999875 34 4555544433
No 58
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.93 E-value=2e-08 Score=74.54 Aligned_cols=139 Identities=9% Similarity=0.120 Sum_probs=83.1
Q ss_pred chHHHHhhccCC--C-cHHHHHHHHHHHHhcCC-hhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhH
Q 045555 2 GFALEIFGNMKN--K-DVISWTTIVSGYINRGQ-VDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQ 74 (175)
Q Consensus 2 ~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (175)
++|++.|+...+ | +..+|+.+...+.+.|+ +++|+..|++..+ .+...|+.+...+.+.|++++|+..|++.+
T Consensus 114 ~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal 193 (382)
T 2h6f_A 114 ERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADIL 193 (382)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 345555555443 2 45556666666666664 6666666665542 244556666666666666666666666665
Q ss_pred hCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHh-cCChhHH----
Q 045555 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAI-SGHGDTA---- 146 (175)
Q Consensus 75 ~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~-~g~~~~a---- 146 (175)
+.. +.+...|..+..++.+.|++++|...|+++.+ | +...|+.+...+.+ .|..++|
T Consensus 194 ~ld---------------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~ 258 (382)
T 2h6f_A 194 NQD---------------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLER 258 (382)
T ss_dssp HHC---------------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHH
T ss_pred HhC---------------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 532 22345556677777777777777777777743 2 55667777777776 5554666
Q ss_pred -HHHHHHHHH
Q 045555 147 -LDMFSQMLR 155 (175)
Q Consensus 147 -~~~~~~m~~ 155 (175)
.+.|++.++
T Consensus 259 el~~~~~Al~ 268 (382)
T 2h6f_A 259 EVQYTLEMIK 268 (382)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 366666654
No 59
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.93 E-value=1.2e-07 Score=66.48 Aligned_cols=152 Identities=13% Similarity=-0.026 Sum_probs=86.1
Q ss_pred chHHHHhhccCCC-cHHHHHHHHHHHHh----cCChhHHHHHhhcCCC-CChhHHHHHHHHHhc----cCChHHHHHHHH
Q 045555 2 GFALEIFGNMKNK-DVISWTTIVSGYIN----RGQVDIARQYFAQMPE-RDYVLWTAMIDGYLR----VNRFREALTLFR 71 (175)
Q Consensus 2 ~~A~~~~~~m~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~ 71 (175)
++|.+.|+...+| +..++..+...|.+ .+++++|...|++..+ .+...+..+...|.. .+++++|+..|+
T Consensus 23 ~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~ 102 (273)
T 1ouv_A 23 TQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYS 102 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHH
Confidence 4566666655543 45667777777777 7777777777776553 355667777777777 777777777777
Q ss_pred HhHhCCCCCChHHHHHhhh---c-------------------cCcchhHHHHHHHHHHh----cCCHHHHHHHHHhhcCC
Q 045555 72 EMQTSNIRRDEFTTVRILT---T-------------------FNNDIFVGIALIDMYCK----CGDVEKAQRVFWKMLRK 125 (175)
Q Consensus 72 ~m~~~~~~p~~~~~~~l~~---~-------------------~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~ 125 (175)
+..+.+ +...+..+-. . -..+...+..+...|.. .+++++|...|+...+.
T Consensus 103 ~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~ 179 (273)
T 1ouv_A 103 KACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL 179 (273)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 777654 1111111000 0 00022334444455554 55555555555555332
Q ss_pred -ChhhHHHHHHHHHh----cCChhHHHHHHHHHHHC
Q 045555 126 -DKFTWTAMIVGLAI----SGHGDTALDMFSQMLRA 156 (175)
Q Consensus 126 -~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~ 156 (175)
+...+..+...|.. .+++++|.+.|++..+.
T Consensus 180 ~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 180 KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Confidence 34445555555555 55666666666555554
No 60
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.91 E-value=6.6e-09 Score=73.75 Aligned_cols=131 Identities=14% Similarity=0.091 Sum_probs=104.8
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC----------C-ChhHHHHHHHHHhccCChHHHHHHHHHhHhCC---CCC
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE----------R-DYVLWTAMIDGYLRVNRFREALTLFREMQTSN---IRR 80 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p 80 (175)
...++..+...|...|++++|...|++..+ + ....+..+...+...|++++|+..+++..+.. ..+
T Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 189 (311)
T 3nf1_A 110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP 189 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 456788999999999999999999998653 1 34568889999999999999999999997741 001
Q ss_pred ChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC------------------------------------
Q 045555 81 DEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR------------------------------------ 124 (175)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~------------------------------------ 124 (175)
+. +....++..+...|.+.|++++|.+.|++..+
T Consensus 190 ~~----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (311)
T 3nf1_A 190 DD----------PNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS 259 (311)
T ss_dssp TC----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CC
T ss_pred CC----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHH
Confidence 10 11234567899999999999999999998752
Q ss_pred ---------------C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 125 ---------------K-DKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 125 ---------------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
| ...+|..+...|.+.|++++|.+.|++..+
T Consensus 260 ~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 260 FGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp SCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 345688899999999999999999998875
No 61
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.90 E-value=3.4e-08 Score=70.91 Aligned_cols=122 Identities=9% Similarity=0.008 Sum_probs=80.3
Q ss_pred chHHHHhhccCC--C-cHH-HHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHH-hccCChHHHHHHHHHh
Q 045555 2 GFALEIFGNMKN--K-DVI-SWTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGY-LRVNRFREALTLFREM 73 (175)
Q Consensus 2 ~~A~~~~~~m~~--~-~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~-~~~~~~~~a~~~~~~m 73 (175)
++|.++|+...+ | +.. +|..+...+.+.|++++|..+|++..+ | +...|....... ...|++++|..+|++.
T Consensus 116 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~a 195 (308)
T 2ond_A 116 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELG 195 (308)
T ss_dssp HHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 467777777665 4 343 788888888888888888888887654 2 333343332221 1257777787777777
Q ss_pred HhCCCCCChHHHHHhhh--------------------c--cCc--chhHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 74 QTSNIRRDEFTTVRILT--------------------T--FNN--DIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 74 ~~~~~~p~~~~~~~l~~--------------------~--~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
.+... -+...+..+.. . ..| ...+|..++..+.+.|+.+.|..+++.+.+
T Consensus 196 l~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 196 LKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66421 12333332222 1 244 356899999999999999999999999865
No 62
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.89 E-value=8e-09 Score=75.36 Aligned_cols=125 Identities=14% Similarity=0.078 Sum_probs=105.8
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC--C-C---------------hhHHHHHHHHHhccCChHHHHHHHHHhHhC
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE--R-D---------------YVLWTAMIDGYLRVNRFREALTLFREMQTS 76 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~---------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (175)
+...+..+...|.+.|++++|...|++..+ | + ...|..+..++.+.|++++|+..+++.++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567889999999999999999999998663 3 3 478999999999999999999999999985
Q ss_pred CCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHH-HHHHHH
Q 045555 77 NIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTA-LDMFSQ 152 (175)
Q Consensus 77 ~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a-~~~~~~ 152 (175)
. | .+...+..+..+|...|++++|...|++..+ | +...+..+...+.+.|+.++| .+.|+.
T Consensus 226 ~--p-------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~ 290 (336)
T 1p5q_A 226 D--S-------------NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYAN 290 (336)
T ss_dssp C--T-------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C--C-------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 2 2445567899999999999999999999843 4 677888999999999999998 556777
Q ss_pred HH
Q 045555 153 ML 154 (175)
Q Consensus 153 m~ 154 (175)
|.
T Consensus 291 ~~ 292 (336)
T 1p5q_A 291 MF 292 (336)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 63
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.88 E-value=5.7e-08 Score=72.14 Aligned_cols=127 Identities=10% Similarity=0.045 Sum_probs=111.8
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCC-hHHHHHHHHHhHhCCCCCChHHHHHhhh
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNR-FREALTLFREMQTSNIRRDEFTTVRILT 90 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 90 (175)
+..+|+.+...+.+.|++++|+..|++..+ .+...|+.+...+.+.|+ +++|+..|++.++..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~------------- 162 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ------------- 162 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-------------
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-------------
Confidence 456889999999999999999999998764 467789999999999997 999999999999854
Q ss_pred ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 91 TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 91 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
+.+...|..+..++.+.|++++|...|++..+ | +...|..+..++.+.|++++|.+.|+++++.
T Consensus 163 --P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l 229 (382)
T 2h6f_A 163 --PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 229 (382)
T ss_dssp --TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 22456678899999999999999999999954 3 7789999999999999999999999999975
No 64
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.87 E-value=3.1e-08 Score=63.83 Aligned_cols=124 Identities=10% Similarity=-0.030 Sum_probs=95.8
Q ss_pred HHHHHHhcCChhHHHHHhhcCCCC---ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhH
Q 045555 22 IVSGYINRGQVDIARQYFAQMPER---DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFV 98 (175)
Q Consensus 22 li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 98 (175)
|...+...|++++|...++...+. +...+..+...|.+.|++++|++.|++..+.. | .+...
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p-------------~~~~a 67 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--E-------------RDPKA 67 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-------------TCHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-------------CCHHH
Confidence 344566778899999999887753 44567788889999999999999999998853 2 24566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHH-HHHHHCCCCCcH
Q 045555 99 GIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMF-SQMLRASIRLDE 162 (175)
Q Consensus 99 ~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~-~~m~~~g~~p~~ 162 (175)
|..+..+|.+.|++++|...|+...+ | +...|..+...|.+.|++++|.+.| ++..+. .|+.
T Consensus 68 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~ 133 (150)
T 4ga2_A 68 HRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGS 133 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTC
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCC
Confidence 78899999999999999999999843 4 6778899999999999998877664 776653 4543
No 65
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.87 E-value=3.2e-07 Score=64.39 Aligned_cols=126 Identities=11% Similarity=0.041 Sum_probs=91.3
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCCC-ChhHHHHHHHHHhc----cCChHHHHHHHHHhHhCCCCCChHHHHHhh
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPER-DYVLWTAMIDGYLR----VNRFREALTLFREMQTSNIRRDEFTTVRIL 89 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 89 (175)
++.++..+...|.+.|++++|...|++..++ +...+..+...|.. .+++++|+..|++..+.+ +..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~------ 75 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSN------ 75 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHH------
Confidence 6678888999999999999999999987765 56778888889999 999999999999998875 222
Q ss_pred hccCcchhHHHHHHHHHHh----cCCHHHHHHHHHhhcCC-ChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 045555 90 TTFNNDIFVGIALIDMYCK----CGDVEKAQRVFWKMLRK-DKFTWTAMIVGLAI----SGHGDTALDMFSQMLRAS 157 (175)
Q Consensus 90 ~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 157 (175)
.+..+...|.. .+++++|.+.|+...+. +...+..+...|.. .+++++|.+.|++..+.+
T Consensus 76 --------a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~ 144 (273)
T 1ouv_A 76 --------GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN 144 (273)
T ss_dssp --------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred --------HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC
Confidence 22345555655 66666666666665433 44555555566665 666666666666665544
No 66
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.86 E-value=1.9e-08 Score=70.33 Aligned_cols=154 Identities=10% Similarity=0.067 Sum_probs=103.3
Q ss_pred chHHHHhhccCC--C-c---HHHHHHHHHHHHhcCChhHHHHHhhcCCC--C----ChhHHHHHHHHHhc--------cC
Q 045555 2 GFALEIFGNMKN--K-D---VISWTTIVSGYINRGQVDIARQYFAQMPE--R----DYVLWTAMIDGYLR--------VN 61 (175)
Q Consensus 2 ~~A~~~~~~m~~--~-~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~----~~~~~~~li~~~~~--------~~ 61 (175)
++|+..|+...+ | + ..++..+..+|.+.|++++|...|+...+ | ....+..+..++.+ .|
T Consensus 32 ~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~ 111 (261)
T 3qky_A 32 DRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQT 111 (261)
T ss_dssp HHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCH
T ss_pred HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccch
Confidence 467777777664 4 2 56777788888888888888888887653 3 13356666777777 78
Q ss_pred ChHHHHHHHHHhHhCCCCCChHHHHHh--hhccCc-chhHHHHHHHHHHhcCCHHHHHHHHHhhcC--CC----hhhHHH
Q 045555 62 RFREALTLFREMQTSNIRRDEFTTVRI--LTTFNN-DIFVGIALIDMYCKCGDVEKAQRVFWKMLR--KD----KFTWTA 132 (175)
Q Consensus 62 ~~~~a~~~~~~m~~~~~~p~~~~~~~l--~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~----~~~~~~ 132 (175)
++++|+..|++..+........ .... +....+ -...+..+...|.+.|++++|...|+...+ |+ ...+..
T Consensus 112 ~~~~A~~~~~~~l~~~p~~~~~-~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 190 (261)
T 3qky_A 112 DTRKAIEAFQLFIDRYPNHELV-DDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVG 190 (261)
T ss_dssp HHHHHHHHHHHHHHHCTTCTTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCcCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHH
Confidence 8888888888887753211100 0000 000000 000114578899999999999999999854 43 346777
Q ss_pred HHHHHHhc----------CChhHHHHHHHHHHHC
Q 045555 133 MIVGLAIS----------GHGDTALDMFSQMLRA 156 (175)
Q Consensus 133 li~~~~~~----------g~~~~a~~~~~~m~~~ 156 (175)
+..+|... |++++|.+.|+++.+.
T Consensus 191 l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 191 AMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 78888766 8999999999999875
No 67
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.86 E-value=3.9e-08 Score=60.84 Aligned_cols=108 Identities=20% Similarity=0.368 Sum_probs=89.7
Q ss_pred chHHHHhhccCC---CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 2 GFALEIFGNMKN---KDVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 2 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
++|.++|+.+.+ .+...+..+...+.+.|++++|...|+++.+ .+...+..+...+.+.|++++|...++++.+
T Consensus 18 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 97 (136)
T 2fo7_A 18 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 97 (136)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 567888887654 4677889999999999999999999998753 4667888999999999999999999999988
Q ss_pred CCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 76 SNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 76 ~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
... .+...+..+...+.+.|++++|.+.++.+..
T Consensus 98 ~~~---------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 98 LDP---------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HCT---------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hCC---------------CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 542 2334556789999999999999999998743
No 68
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.86 E-value=1.4e-08 Score=70.98 Aligned_cols=131 Identities=15% Similarity=0.076 Sum_probs=104.4
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC----------C-ChhHHHHHHHHHhccCChHHHHHHHHHhHhCC---CCC
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE----------R-DYVLWTAMIDGYLRVNRFREALTLFREMQTSN---IRR 80 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p 80 (175)
...++..+...|...|++++|...|++..+ | ...++..+...+...|++++|...+++..+.. ..+
T Consensus 84 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 163 (283)
T 3edt_B 84 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGP 163 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 456899999999999999999999998653 1 34578899999999999999999999998751 011
Q ss_pred ChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC-----------------------------------
Q 045555 81 DEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK----------------------------------- 125 (175)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----------------------------------- 125 (175)
+. +....++..+...|.+.|++++|...+++..+.
T Consensus 164 ~~----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (283)
T 3edt_B 164 DD----------PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP 233 (283)
T ss_dssp TC----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---
T ss_pred CC----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH
Confidence 10 112445678999999999999999999887321
Q ss_pred -----------------ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 126 -----------------DKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 126 -----------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
...++..+...|...|++++|.+.|++..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 234 YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp ---------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 223677888999999999999999998775
No 69
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.85 E-value=1.3e-07 Score=60.97 Aligned_cols=126 Identities=13% Similarity=0.053 Sum_probs=101.5
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhc
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT 91 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (175)
....+..+...+.+.|++++|...|+...+ .+...+..+...+.+.|++++|+..+++..+.. |
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~----------- 78 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--K----------- 78 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-----------
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--c-----------
Confidence 356788889999999999999999998653 467789999999999999999999999998854 2
Q ss_pred cCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHH--HHHhcCChhHHHHHHHHHHH
Q 045555 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIV--GLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 92 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~ 155 (175)
.+...+..+..++.+.|++++|.+.|++..+ | +...+..+.. .+...|++++|.+.+.+...
T Consensus 79 --~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 79 --KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp --TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 2344567889999999999999999999844 3 4455544433 47788999999999887653
No 70
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.84 E-value=2.3e-08 Score=64.40 Aligned_cols=126 Identities=12% Similarity=0.080 Sum_probs=99.3
Q ss_pred chHHHHhhccCC--C-cHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 2 GFALEIFGNMKN--K-DVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 2 ~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
++|+..+..... | +...+-.+...|.+.|++++|.+.|++..+ .+..+|..+...+.+.|++++|+..|++..+
T Consensus 14 e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 93 (150)
T 4ga2_A 14 ERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVE 93 (150)
T ss_dssp HHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 567777777665 2 455677889999999999999999998763 4778899999999999999999999999998
Q ss_pred CCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHH-Hhhc--CC-ChhhHHHHHHHHHhcCC
Q 045555 76 SNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVF-WKML--RK-DKFTWTAMIVGLAISGH 142 (175)
Q Consensus 76 ~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~-~~~~--~~-~~~~~~~li~~~~~~g~ 142 (175)
.. | .+...+..+...|.+.|++++|.+.| +... .| +..+|......+...|+
T Consensus 94 ~~--p-------------~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 94 LN--P-------------TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HC--T-------------TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hC--C-------------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 53 2 24556678999999999998776654 6553 35 66777777777766664
No 71
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.82 E-value=1.8e-07 Score=66.58 Aligned_cols=139 Identities=14% Similarity=0.093 Sum_probs=92.6
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHH---
Q 045555 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVR--- 87 (175)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~--- 87 (175)
.+...+..+...+.+.|++++|...|++..+ | +...+..+...+.+.|++++|...+++..... |+......
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 3455667777778888888888888887653 3 56677888888888888888888888876643 33221111
Q ss_pred ------------------hhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--CC---hhhHHHHHHHHHhcCChh
Q 045555 88 ------------------ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--KD---KFTWTAMIVGLAISGHGD 144 (175)
Q Consensus 88 ------------------l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~---~~~~~~li~~~~~~g~~~ 144 (175)
.+..-+.+...+..+...|...|++++|.+.|....+ |+ ...+..+...+...|+.+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 0111233455666777777777777777777777743 32 456777777777777777
Q ss_pred HHHHHHHHHH
Q 045555 145 TALDMFSQML 154 (175)
Q Consensus 145 ~a~~~~~~m~ 154 (175)
+|...|++..
T Consensus 273 ~a~~~~r~al 282 (287)
T 3qou_A 273 ALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 7777776654
No 72
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.82 E-value=8.1e-08 Score=65.13 Aligned_cols=150 Identities=11% Similarity=0.109 Sum_probs=110.9
Q ss_pred chHHHHhhccCC--C-cHHHHHH----------------HHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhc
Q 045555 2 GFALEIFGNMKN--K-DVISWTT----------------IVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLR 59 (175)
Q Consensus 2 ~~A~~~~~~m~~--~-~~~~~~~----------------li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~ 59 (175)
++|+..|+...+ | +...|.. +...|.+.|++++|...|++..+ .+...+..+...+..
T Consensus 21 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 100 (208)
T 3urz_A 21 GQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVC 100 (208)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 467778877765 4 4456666 89999999999999999998763 377889999999999
Q ss_pred cCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCC--HHHHHHHHHhhcCCChhh--HHHHHH
Q 045555 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGD--VEKAQRVFWKMLRKDKFT--WTAMIV 135 (175)
Q Consensus 60 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~--~~~li~ 135 (175)
.|++++|+..|++..+.. |+ +...+..+...|...|+ .+.+...++....++... +.....
T Consensus 101 ~g~~~~A~~~~~~al~~~--P~-------------~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~ 165 (208)
T 3urz_A 101 RGQEKDALRMYEKILQLE--AD-------------NLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGL 165 (208)
T ss_dssp HTCHHHHHHHHHHHHHHC--TT-------------CHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC--CC-------------CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 999999999999999854 32 34455677777765543 556777888877776543 333455
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHH
Q 045555 136 GLAISGHGDTALDMFSQMLRASIRLDEVTYVGV 168 (175)
Q Consensus 136 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 168 (175)
++...|++++|...|++.++ +.|+......+
T Consensus 166 ~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l 196 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVIL--RFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH--hCCCHHHHHHH
Confidence 66678999999999999986 46776554443
No 73
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.80 E-value=1.6e-07 Score=60.71 Aligned_cols=125 Identities=13% Similarity=0.049 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchh
Q 045555 18 SWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIF 97 (175)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 97 (175)
....+...+..-+.+.++.+ +.+.+...+..+...+.+.|++++|+..|++..+.. | .+..
T Consensus 11 ~~~~l~~~~~~~~~l~~al~----l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P-------------~~~~ 71 (151)
T 3gyz_A 11 ISTAVIDAINSGATLKDINA----IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--F-------------YNVD 71 (151)
T ss_dssp HHHHHHHHHHTSCCTGGGCC----SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-------------TCHH
T ss_pred HHHHHHHHHHCCCCHHHHhC----CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-------------CCHH
Confidence 34455555544444333322 111255678888999999999999999999999854 2 3456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHH
Q 045555 98 VGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEV 163 (175)
Q Consensus 98 ~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 163 (175)
.|..+..+|.+.|++++|...|++... | +...|..+..+|...|++++|.+.|++.++. .||..
T Consensus 72 ~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 72 YIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 678899999999999999999999843 4 6788999999999999999999999999875 45543
No 74
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.80 E-value=4.9e-07 Score=56.43 Aligned_cols=102 Identities=9% Similarity=0.003 Sum_probs=85.6
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C
Q 045555 48 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K 125 (175)
Q Consensus 48 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~ 125 (175)
..+......|.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|...|+...+ |
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~---------------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 78 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD---------------PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS 78 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh
Confidence 457788899999999999999999998854 23455667899999999999999999999844 3
Q ss_pred -ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHH
Q 045555 126 -DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYV 166 (175)
Q Consensus 126 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 166 (175)
+...|..+..+|...|++++|.+.|++.++. .|+.....
T Consensus 79 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--~P~~~~a~ 118 (126)
T 4gco_A 79 KFIKGYIRKAACLVAMREWSKAQRAYEDALQV--DPSNEEAR 118 (126)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred hhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcCCHHHH
Confidence 6788999999999999999999999999874 56544433
No 75
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.79 E-value=1.7e-08 Score=80.20 Aligned_cols=138 Identities=12% Similarity=0.086 Sum_probs=108.8
Q ss_pred chHHHHhhccC--------C---CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHH
Q 045555 2 GFALEIFGNMK--------N---KDVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREAL 67 (175)
Q Consensus 2 ~~A~~~~~~m~--------~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~ 67 (175)
++|++.++... + .+...+..+...|.+.|++++|...|++..+ .+...|..+...+.+.|++++|+
T Consensus 408 ~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~ 487 (681)
T 2pzi_A 408 VQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSAT 487 (681)
T ss_dssp HHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 46777777665 2 4677899999999999999999999998774 47778999999999999999999
Q ss_pred HHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChh
Q 045555 68 TLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGD 144 (175)
Q Consensus 68 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~ 144 (175)
+.|++..+.. |+ +...+..+..+|.+.|++++ .+.|++..+ | +...|..+..++.+.|+++
T Consensus 488 ~~~~~al~l~--P~-------------~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~ 551 (681)
T 2pzi_A 488 KHFTEVLDTF--PG-------------ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRV 551 (681)
T ss_dssp HHHHHHHHHS--TT-------------CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhC--CC-------------ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHH
Confidence 9999998854 22 34445677777888888888 778877643 3 5667777788888888888
Q ss_pred HHHHHHHHHHH
Q 045555 145 TALDMFSQMLR 155 (175)
Q Consensus 145 ~a~~~~~~m~~ 155 (175)
+|.+.|++..+
T Consensus 552 ~A~~~~~~al~ 562 (681)
T 2pzi_A 552 GAVRTLDEVPP 562 (681)
T ss_dssp HHHHHHHTSCT
T ss_pred HHHHHHHhhcc
Confidence 88888877764
No 76
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.79 E-value=2.5e-07 Score=56.43 Aligned_cols=95 Identities=19% Similarity=0.324 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--
Q 045555 47 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR-- 124 (175)
Q Consensus 47 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-- 124 (175)
...|..+...+.+.|++++|...++++.+.. | .+...+..+...+.+.|++++|...|+.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~-------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 73 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--P-------------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--c-------------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 3455566666666666666666666666542 1 1233345566666667777777766666632
Q ss_pred -CChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 125 -KDKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 125 -~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
.+..++..+...+...|++++|.+.|+++.+.
T Consensus 74 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 74 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 24556666666677777777777777766653
No 77
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.79 E-value=5.2e-07 Score=61.32 Aligned_cols=137 Identities=12% Similarity=0.043 Sum_probs=105.0
Q ss_pred chHHHHhhccCC-CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC-CChhHHHHHHHHHhccC----ChHHHHHHHHHhHh
Q 045555 2 GFALEIFGNMKN-KDVISWTTIVSGYINRGQVDIARQYFAQMPE-RDYVLWTAMIDGYLRVN----RFREALTLFREMQT 75 (175)
Q Consensus 2 ~~A~~~~~~m~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~ 75 (175)
.+|.++|+...+ -++.++..+...|.+.+++++|...|++..+ .+...+..|-..|.. + ++++|+..|++..+
T Consensus 3 ~eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~ 81 (212)
T 3rjv_A 3 TEPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE 81 (212)
T ss_dssp -CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH
Confidence 367778877665 5888999999999999999999999998765 466778888888887 6 89999999999987
Q ss_pred CCCCCChHHHHHhhhccCcchhHHHHHHHHHHh----cCCHHHHHHHHHhhcCCC-----hhhHHHHHHHHHh----cCC
Q 045555 76 SNIRRDEFTTVRILTTFNNDIFVGIALIDMYCK----CGDVEKAQRVFWKMLRKD-----KFTWTAMIVGLAI----SGH 142 (175)
Q Consensus 76 ~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~-----~~~~~~li~~~~~----~g~ 142 (175)
.|. ...+..|...|.. .+++++|.+.|+...+.+ ...+..+-..|.. .++
T Consensus 82 ~g~-----------------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d 144 (212)
T 3rjv_A 82 AGS-----------------KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED 144 (212)
T ss_dssp TTC-----------------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC
T ss_pred CCC-----------------HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC
Confidence 652 2233456666665 778888888888876543 4677777777777 677
Q ss_pred hhHHHHHHHHHHHC
Q 045555 143 GDTALDMFSQMLRA 156 (175)
Q Consensus 143 ~~~a~~~~~~m~~~ 156 (175)
+++|.+.|++..+.
T Consensus 145 ~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 145 DVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 88888888887765
No 78
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.78 E-value=1.2e-07 Score=63.91 Aligned_cols=124 Identities=15% Similarity=0.030 Sum_probs=96.6
Q ss_pred chHHHHhhccCCCcHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCC
Q 045555 2 GFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 78 (175)
Q Consensus 2 ~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 78 (175)
++|++.|+....|+..++..+...|.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+...
T Consensus 23 ~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~ 102 (213)
T 1hh8_A 23 KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR 102 (213)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC
Confidence 5788999988888999999999999999999999999998763 4677899999999999999999999999988542
Q ss_pred CCChHHHHHhhhccCc-chhHHHHHHHHHHhcCCHHHHHHHHHhhcCC
Q 045555 79 RRDEFTTVRILTTFNN-DIFVGIALIDMYCKCGDVEKAQRVFWKMLRK 125 (175)
Q Consensus 79 ~p~~~~~~~l~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 125 (175)
......+..+-....| ....+..+..+|.+.|++++|.+.|+...+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 103 GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 2110000000000111 2356678999999999999999999998653
No 79
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.75 E-value=3.6e-07 Score=56.54 Aligned_cols=93 Identities=16% Similarity=0.078 Sum_probs=51.5
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhc
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT 91 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (175)
+...+..+...+.+.|++++|...|++..+ .+...+..+...+...|++++|+..+++..+.. |
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~----------- 81 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--P----------- 81 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--T-----------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--C-----------
Confidence 445555666666666666666666665432 244555556666666666666666666665532 1
Q ss_pred cCcchhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 045555 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKM 122 (175)
Q Consensus 92 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 122 (175)
.+...+..+..+|.+.|++++|.+.|+..
T Consensus 82 --~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 82 --TFIKGYTRKAAALEAMKDYTKAMDVYQKA 110 (133)
T ss_dssp --TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --CchHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 12233345555556666666666666555
No 80
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.75 E-value=2e-07 Score=63.92 Aligned_cols=154 Identities=12% Similarity=0.037 Sum_probs=102.3
Q ss_pred chHHHHhhccCC--Cc----HHHHHHHHHHHHhcCChhHHHHHhhcCCC--CCh----hHHHHHHHHHhc----------
Q 045555 2 GFALEIFGNMKN--KD----VISWTTIVSGYINRGQVDIARQYFAQMPE--RDY----VLWTAMIDGYLR---------- 59 (175)
Q Consensus 2 ~~A~~~~~~m~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~----~~~~~li~~~~~---------- 59 (175)
++|+..|+.+.+ |+ ..++..+..+|.+.|++++|...|++..+ |+. ..+..+..++.+
T Consensus 21 ~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~ 100 (225)
T 2yhc_A 21 RQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFF 100 (225)
T ss_dssp HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 467777777664 42 35677788888888888888888888653 321 134444444433
Q ss_pred --------cCChHHHHHHHHHhHhCCCCCChHH-HHHh--hhccCcc-hhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C
Q 045555 60 --------VNRFREALTLFREMQTSNIRRDEFT-TVRI--LTTFNND-IFVGIALIDMYCKCGDVEKAQRVFWKMLR--K 125 (175)
Q Consensus 60 --------~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l--~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~ 125 (175)
.|++++|+..|+++.+.. |+... .... +..+... ....-.+...|.+.|++++|...|+.+.+ |
T Consensus 101 ~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p 178 (225)
T 2yhc_A 101 GVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYP 178 (225)
T ss_dssp -------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred ccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCc
Confidence 567888888888888753 22111 1000 0000000 01112467788999999999999999854 4
Q ss_pred Ch----hhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 045555 126 DK----FTWTAMIVGLAISGHGDTALDMFSQMLRAS 157 (175)
Q Consensus 126 ~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 157 (175)
+. ..+..+..+|.+.|+.++|.+.++.+...+
T Consensus 179 ~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 179 DTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred CCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 32 468889999999999999999999988763
No 81
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.75 E-value=3.3e-07 Score=56.36 Aligned_cols=113 Identities=8% Similarity=-0.001 Sum_probs=64.5
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhc
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT 91 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (175)
+...+..+...+...|++++|...|++..+ .+...+..+...+...|++++|...+++..+.. |
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~----------- 77 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--P----------- 77 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-----------
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--c-----------
Confidence 344566666666666666666666665442 245556666666666666666666666666532 1
Q ss_pred cCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCC
Q 045555 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGH 142 (175)
Q Consensus 92 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~ 142 (175)
.+...+..+...|.+.|++++|...|+...+ | +...+..+...+.+.|+
T Consensus 78 --~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 78 --AYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp --TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred --cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 1223334566666666666666666666532 2 44455555555555544
No 82
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.74 E-value=8.9e-08 Score=68.28 Aligned_cols=131 Identities=7% Similarity=-0.017 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHhhcCCC-----CC----hhHHHHHHHHHhcc-CChHHHHHHHHHhHhCCCCCChHHH
Q 045555 16 VISWTTIVSGYINRGQVDIARQYFAQMPE-----RD----YVLWTAMIDGYLRV-NRFREALTLFREMQTSNIRRDEFTT 85 (175)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~ 85 (175)
..+|+.+..+|.+.|++++|...|++..+ .+ ..+++.+...|... |++++|+..|++..+.....+...
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~- 155 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA- 155 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChH-
Confidence 56899999999999999999999987664 12 35788899999996 999999999999987421100000
Q ss_pred HHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--CCh-h-------hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 86 VRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--KDK-F-------TWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~-~-------~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
....+++.+...|.+.|++++|...|+...+ |+. . .|..+..++...|++++|...|++..+
T Consensus 156 --------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 156 --------LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp --------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred --------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 0134567899999999999999999999844 221 1 567788889999999999999999875
No 83
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.74 E-value=2.7e-07 Score=57.65 Aligned_cols=95 Identities=15% Similarity=0.113 Sum_probs=82.0
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhc
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT 91 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (175)
....+......|.+.|++++|.+.|++..+ .+...|..+..++.+.|++++|+..|++.++.+
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------------- 77 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-------------- 77 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--------------
Confidence 346788899999999999999999998663 477889999999999999999999999998854
Q ss_pred cCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 92 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
+.+...|..+..+|...|++++|.+.|++..+
T Consensus 78 -p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 78 -SKFIKGYIRKAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22455667899999999999999999999854
No 84
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.73 E-value=2.3e-07 Score=65.74 Aligned_cols=132 Identities=15% Similarity=0.160 Sum_probs=106.6
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC--------C---ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCC---CC
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE--------R---DYVLWTAMIDGYLRVNRFREALTLFREMQTSNI---RR 80 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--------~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~p 80 (175)
+..++..+...+...|++++|..+|+++.+ . ....+..+...+...|++++|...+++..+... .+
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 567899999999999999999999998764 1 345688899999999999999999999976410 01
Q ss_pred ChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-------C----ChhhHHHHHHHHHhcCChhHHHHH
Q 045555 81 DEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR-------K----DKFTWTAMIVGLAISGHGDTALDM 149 (175)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~a~~~ 149 (175)
+ .+.....+..+...|...|++++|.+.|++..+ + ....+..+...+...|++++|.+.
T Consensus 106 ~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 175 (311)
T 3nf1_A 106 D----------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYY 175 (311)
T ss_dssp T----------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred C----------ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1 011245667899999999999999999999843 1 345688889999999999999999
Q ss_pred HHHHHHC
Q 045555 150 FSQMLRA 156 (175)
Q Consensus 150 ~~~m~~~ 156 (175)
+++..+.
T Consensus 176 ~~~a~~~ 182 (311)
T 3nf1_A 176 YQRALEI 182 (311)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
No 85
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.73 E-value=8.4e-08 Score=64.05 Aligned_cols=144 Identities=12% Similarity=-0.015 Sum_probs=109.6
Q ss_pred chHHH---HhhccCCCcHHHHHHHHHHHHhcCChhHHHHHhhcCCC------C---ChhHHHHHHHHHhccCChHHHHHH
Q 045555 2 GFALE---IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPE------R---DYVLWTAMIDGYLRVNRFREALTL 69 (175)
Q Consensus 2 ~~A~~---~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~------~---~~~~~~~li~~~~~~~~~~~a~~~ 69 (175)
++|.+ ++..-+.....++..+...+...|++++|...+++..+ . ...++..+...+...|++++|...
T Consensus 9 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 88 (203)
T 3gw4_A 9 ALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRC 88 (203)
T ss_dssp HHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45666 55443334677899999999999999999999988654 1 345688888999999999999999
Q ss_pred HHHhHhCCC-CC-ChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-----CC----hhhHHHHHHHHH
Q 045555 70 FREMQTSNI-RR-DEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR-----KD----KFTWTAMIVGLA 138 (175)
Q Consensus 70 ~~~m~~~~~-~p-~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~ 138 (175)
+++..+..- .+ +... ....+..+...+...|++++|.+.+++..+ .+ ..++..+...+.
T Consensus 89 ~~~al~~~~~~~~~~~~----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 158 (203)
T 3gw4_A 89 FLEERELLASLPEDPLA----------ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQ 158 (203)
T ss_dssp HHHHHHHHHHSCCCHHH----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHH----------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 999877410 11 1101 133457889999999999999999998742 12 234677888999
Q ss_pred hcCChhHHHHHHHHHHH
Q 045555 139 ISGHGDTALDMFSQMLR 155 (175)
Q Consensus 139 ~~g~~~~a~~~~~~m~~ 155 (175)
..|++++|.+.+++..+
T Consensus 159 ~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 159 QEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHH
Confidence 99999999999988765
No 86
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.71 E-value=4.9e-07 Score=56.43 Aligned_cols=104 Identities=10% Similarity=0.035 Sum_probs=83.3
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C
Q 045555 48 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K 125 (175)
Q Consensus 48 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~ 125 (175)
..+..+...+.+.|++++|+..|++.++.. |+ +...|..+..+|.+.|++++|.+.|+...+ |
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~-------------~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~ 73 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD--PS-------------NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-------------CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc
Confidence 457788899999999999999999998843 32 355668899999999999999999998843 2
Q ss_pred C--------hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHH
Q 045555 126 D--------KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGV 168 (175)
Q Consensus 126 ~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 168 (175)
+ ..+|..+..++...|++++|.+.|++.++. .||+.+...|
T Consensus 74 ~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 74 ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 1 236777888899999999999999998864 5676665544
No 87
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.71 E-value=6.7e-07 Score=54.46 Aligned_cols=110 Identities=19% Similarity=0.300 Sum_probs=89.0
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCCCCh---hHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhc
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDY---VLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT 91 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (175)
+...+..+...+.+.|++++|...|+++.+.+. .++..+...+.+.|++++|...++++.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------------- 73 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------------- 73 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------------
Confidence 367888999999999999999999999887664 357788889999999999999999998753
Q ss_pred cCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHh
Q 045555 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAI 139 (175)
Q Consensus 92 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~ 139 (175)
+.+...+..+...|.+.|++++|...|+...+ | +...+..+...+..
T Consensus 74 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 74 -PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 23456788899999999999999999999843 3 44555555554443
No 88
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.69 E-value=1.2e-06 Score=67.44 Aligned_cols=140 Identities=14% Similarity=0.141 Sum_probs=97.1
Q ss_pred hHHHHhhccCC---C-cHHHHHHHHHHHHhcCChhHHHHHhhcCCC--C-Ch-hHHHHHHHHHhccCChHHHHHHHHHhH
Q 045555 3 FALEIFGNMKN---K-DVISWTTIVSGYINRGQVDIARQYFAQMPE--R-DY-VLWTAMIDGYLRVNRFREALTLFREMQ 74 (175)
Q Consensus 3 ~A~~~~~~m~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~-~~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (175)
+|+.+|+...+ | +...|..++..+.+.|++++|..+|++..+ | +. ..|..++..+.+.|++++|.++|++..
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 78888987764 4 578899999999999999999999998763 4 33 479999999999999999999999998
Q ss_pred hCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHH
Q 045555 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMFS 151 (175)
Q Consensus 75 ~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~ 151 (175)
+.... +...+ ....++ .+...|++++|..+|+...+ | +...|..++..+.+.|+.++|..+|+
T Consensus 384 ~~~~~-~~~~~------------~~~a~~-~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~ 449 (530)
T 2ooe_A 384 EDART-RHHVY------------VTAALM-EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFE 449 (530)
T ss_dssp TCTTC-CTHHH------------HHHHHH-HHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred hccCC-chHHH------------HHHHHH-HHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHH
Confidence 85321 11111 111111 12245666666666665532 2 45566666666666666666666666
Q ss_pred HHHHC
Q 045555 152 QMLRA 156 (175)
Q Consensus 152 ~m~~~ 156 (175)
+....
T Consensus 450 ~al~~ 454 (530)
T 2ooe_A 450 RVLTS 454 (530)
T ss_dssp HHHHS
T ss_pred HHHhc
Confidence 66654
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.67 E-value=3.4e-06 Score=58.75 Aligned_cols=131 Identities=13% Similarity=0.046 Sum_probs=104.8
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC--C-C---hhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHH
Q 045555 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPE--R-D---YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVR 87 (175)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 87 (175)
.+...+-.+...+.+.|++++|...|+.+.+ | + ...+..+..++.+.|++++|+..|++..+... +.
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p--~~----- 85 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQ--ID----- 85 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC-----
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC--CC-----
Confidence 4677888888999999999999999999874 4 3 56788899999999999999999999998642 11
Q ss_pred hhhccCcchhHHHHHHHHHHh--------cCCHHHHHHHHHhhcC--C-ChhhH-----------------HHHHHHHHh
Q 045555 88 ILTTFNNDIFVGIALIDMYCK--------CGDVEKAQRVFWKMLR--K-DKFTW-----------------TAMIVGLAI 139 (175)
Q Consensus 88 l~~~~~~~~~~~~~li~~~~~--------~~~~~~a~~~~~~~~~--~-~~~~~-----------------~~li~~~~~ 139 (175)
+.....+..+..++.+ .|++++|...|++..+ | +...+ ..+...|.+
T Consensus 86 -----~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~ 160 (261)
T 3qky_A 86 -----PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYER 160 (261)
T ss_dssp -----TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112334567888888 9999999999999854 4 33334 455778999
Q ss_pred cCChhHHHHHHHHHHHC
Q 045555 140 SGHGDTALDMFSQMLRA 156 (175)
Q Consensus 140 ~g~~~~a~~~~~~m~~~ 156 (175)
.|++++|...|+++++.
T Consensus 161 ~g~~~~A~~~~~~~l~~ 177 (261)
T 3qky_A 161 RELYEAAAVTYEAVFDA 177 (261)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 99999999999999875
No 90
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.67 E-value=4.6e-07 Score=66.72 Aligned_cols=144 Identities=13% Similarity=0.053 Sum_probs=110.0
Q ss_pred chHHHHhhccCC-----C----cHHHHHHHHHHHHhcCChhHHHHHhhcCCC-----C-----ChhHHHHHHHHHhccCC
Q 045555 2 GFALEIFGNMKN-----K----DVISWTTIVSGYINRGQVDIARQYFAQMPE-----R-----DYVLWTAMIDGYLRVNR 62 (175)
Q Consensus 2 ~~A~~~~~~m~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~-----~~~~~~~li~~~~~~~~ 62 (175)
++|.+.|+...+ + ...++..+...|...|++++|...+++..+ + ...+++.+...|...|+
T Consensus 120 ~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 199 (383)
T 3ulq_A 120 LSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQ 199 (383)
T ss_dssp HHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcC
Confidence 355566655433 2 456788999999999999999998887653 2 23468888899999999
Q ss_pred hHHHHHHHHHhHhCCCC-CChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-----CC----hhhHHH
Q 045555 63 FREALTLFREMQTSNIR-RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR-----KD----KFTWTA 132 (175)
Q Consensus 63 ~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~ 132 (175)
+++|...|++..+.... ++... ...++..+...|...|++++|.+.|++..+ .+ ..++..
T Consensus 200 ~~~A~~~~~~al~~~~~~~~~~~----------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 200 YEDAISHFQKAYSMAEAEKQPQL----------MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCChHH----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 99999999998764211 11111 134567899999999999999999999854 22 456888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 045555 133 MIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
+...|.+.|++++|.+.+++..+
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999998875
No 91
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.66 E-value=1.9e-06 Score=53.23 Aligned_cols=108 Identities=9% Similarity=-0.076 Sum_probs=85.6
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C
Q 045555 48 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K 125 (175)
Q Consensus 48 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~ 125 (175)
..|..+...+.+.|++++|+..|++..+.. | .+...+..+..+|.+.|++++|...|+...+ |
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p-------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 69 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA--P-------------EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 69 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--C-------------CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 457778888999999999999999998854 2 2455667899999999999999999999843 4
Q ss_pred -ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCcHHHHHHHHh
Q 045555 126 -DKFTWTAMIVGLAISGHGDTALDMFSQMLRAS----IRLDEVTYVGVLS 170 (175)
Q Consensus 126 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~~~t~~~ll~ 170 (175)
+...|..+..++...|++++|.+.|++..+.. -.|+.......+.
T Consensus 70 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~ 119 (126)
T 3upv_A 70 NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 119 (126)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHH
Confidence 67788999999999999999999999988642 1165554444443
No 92
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.66 E-value=8.2e-08 Score=63.10 Aligned_cols=115 Identities=11% Similarity=0.188 Sum_probs=83.0
Q ss_pred HhcCChhHHHHHhhcCC---CCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHH
Q 045555 27 INRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALI 103 (175)
Q Consensus 27 ~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li 103 (175)
...|++++|...++... ..+...|..+...+...|++++|+..|++..+.. | .+...+..+.
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p-------------~~~~~~~~la 85 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--G-------------ENAELYAALA 85 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--C-------------SCHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C-------------CCHHHHHHHH
Confidence 45677777777777654 2366778888888888899999999888887743 1 2334445677
Q ss_pred HH-HHhcCCH--HHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 104 DM-YCKCGDV--EKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 104 ~~-~~~~~~~--~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
.+ |...|++ ++|...|+...+ | +...|..+...|...|++++|.+.|++..+.
T Consensus 86 ~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 86 TVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 77 7788888 888888888743 3 5667778888888889999999999888775
No 93
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.66 E-value=3.7e-07 Score=58.96 Aligned_cols=95 Identities=13% Similarity=0.109 Sum_probs=82.7
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhc
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT 91 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (175)
+...+..+...+.+.|++++|...|++..+ | +...|..+..+|.+.|++++|+..|++..+.. |+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~---------- 102 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KN---------- 102 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SS----------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CC----------
Confidence 566888999999999999999999998773 4 77889999999999999999999999999854 22
Q ss_pred cCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 92 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
+...|..+..+|.+.|++++|.+.|+...+
T Consensus 103 ---~~~~~~~lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 103 ---DYTPVFHTGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345567899999999999999999999844
No 94
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.65 E-value=3.7e-06 Score=70.95 Aligned_cols=142 Identities=11% Similarity=0.091 Sum_probs=107.6
Q ss_pred hHHHHhhccCCCcHHHHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCCh
Q 045555 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDE 82 (175)
Q Consensus 3 ~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 82 (175)
+|.++.++. .+..+|..+..++.+.|++++|.+.|.+. .|...|..++.+|.+.|++++|++.+...++..-.|..
T Consensus 1094 rAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~I 1169 (1630)
T 1xi4_A 1094 RAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYV 1169 (1630)
T ss_pred HHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccc
Confidence 344444433 35678899999999999999999999764 67778889999999999999999999887765422211
Q ss_pred HHH-----HHh-----hh--ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhcCChhHHHHHH
Q 045555 83 FTT-----VRI-----LT--TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMF 150 (175)
Q Consensus 83 ~~~-----~~l-----~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 150 (175)
.+. ..+ +. --.++..-+..+.+.|...|++++|..+|... ..|..+...|++.|++++|.+.+
T Consensus 1170 dt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaa 1244 (1630)
T 1xi4_A 1170 ETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGA 1244 (1630)
T ss_pred cHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHH
Confidence 111 111 00 11334455667899999999999999999974 58999999999999999999999
Q ss_pred HHH
Q 045555 151 SQM 153 (175)
Q Consensus 151 ~~m 153 (175)
++.
T Consensus 1245 rKA 1247 (1630)
T 1xi4_A 1245 RKA 1247 (1630)
T ss_pred HHh
Confidence 886
No 95
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.64 E-value=5.2e-07 Score=64.21 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=80.1
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHH
Q 045555 34 IARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVE 113 (175)
Q Consensus 34 ~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~ 113 (175)
...+.+......+...+..+...+.+.|++++|...|++..+.. |+.. ..+..+...+.+.|+++
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~-------------~a~~~la~~~~~~g~~~ 168 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNG-------------EIGLLLAETLIALNRSE 168 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCH-------------HHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--Ccch-------------hHHHHHHHHHHHCCCHH
Confidence 34444444444556667888888999999999999999999854 4421 12245777777777777
Q ss_pred HHHHHHHhhcC------------------------------------C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 114 KAQRVFWKMLR------------------------------------K-DKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 114 ~a~~~~~~~~~------------------------------------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
+|.+.++.... | +...+..+...+...|++++|.+.|++++..
T Consensus 169 ~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 169 DAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp HHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 77777776521 2 4567788888999999999999999999875
Q ss_pred C
Q 045555 157 S 157 (175)
Q Consensus 157 g 157 (175)
.
T Consensus 249 ~ 249 (287)
T 3qou_A 249 D 249 (287)
T ss_dssp C
T ss_pred c
Confidence 3
No 96
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.63 E-value=2.6e-06 Score=54.55 Aligned_cols=96 Identities=9% Similarity=-0.086 Sum_probs=79.4
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-
Q 045555 46 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR- 124 (175)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~- 124 (175)
+...+..+...+.+.|++++|+..|++..... +.+...|..+..+|.+.|++++|...|+....
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD---------------HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC---------------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45567778888999999999999999988753 22455567888999999999999999999843
Q ss_pred -C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 125 -K-DKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 125 -~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
| +...|..+..+|...|++++|.+.|++..+.
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4 6778888999999999999999999998764
No 97
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.63 E-value=1.3e-06 Score=52.18 Aligned_cols=96 Identities=11% Similarity=0.013 Sum_probs=73.8
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-
Q 045555 46 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR- 124 (175)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~- 124 (175)
+...+..+...+.+.|++++|...|++..+... .+...+..+...+.+.|++++|...|++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~---------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 69 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP---------------EESKYWLMKGKALYNLERYEEAVDCYNYVINV 69 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC---------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc---------------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 445667777788888888888888888877531 2334456788888888999999888888743
Q ss_pred -C---ChhhHHHHHHHHHhc-CChhHHHHHHHHHHHC
Q 045555 125 -K---DKFTWTAMIVGLAIS-GHGDTALDMFSQMLRA 156 (175)
Q Consensus 125 -~---~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~ 156 (175)
| +...|..+...+... |++++|.+.+++..+.
T Consensus 70 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 70 IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 3 466788888888888 9999999999888765
No 98
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.63 E-value=1.3e-07 Score=63.32 Aligned_cols=128 Identities=9% Similarity=0.051 Sum_probs=84.2
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CCh----------------hHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE---RDY----------------VLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~----------------~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
....+..+...+.+.|++++|...|++..+ .+. ..|..+..++.+.|++++|+..+++..+
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 345677777788888888888888887542 222 5677788888888888888888888877
Q ss_pred CCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHH-HHHH
Q 045555 76 SNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTAL-DMFS 151 (175)
Q Consensus 76 ~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~-~~~~ 151 (175)
.. | .+...+..+..+|...|++++|...|+...+ | +...+..+...+...++..++. ..|.
T Consensus 117 ~~--p-------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 181 (198)
T 2fbn_A 117 ID--K-------------NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFG 181 (198)
T ss_dssp HS--T-------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-------
T ss_pred hC--c-------------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53 2 2344456788888888888888888888733 3 5567777777777777777666 5566
Q ss_pred HHHHCC
Q 045555 152 QMLRAS 157 (175)
Q Consensus 152 ~m~~~g 157 (175)
.|...|
T Consensus 182 ~~f~~~ 187 (198)
T 2fbn_A 182 GMFDKG 187 (198)
T ss_dssp ------
T ss_pred HHhccc
Confidence 665543
No 99
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.62 E-value=3.1e-07 Score=67.60 Aligned_cols=145 Identities=12% Similarity=0.103 Sum_probs=110.7
Q ss_pred chHHHHhhccCC-----C----cHHHHHHHHHHHHhcCChhHHHHHhhcCCC-----C-----ChhHHHHHHHHHhccCC
Q 045555 2 GFALEIFGNMKN-----K----DVISWTTIVSGYINRGQVDIARQYFAQMPE-----R-----DYVLWTAMIDGYLRVNR 62 (175)
Q Consensus 2 ~~A~~~~~~m~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~-----~~~~~~~li~~~~~~~~ 62 (175)
++|+..|+...+ + ...++..+...|...|+++.|...+++..+ + ...+++.+...|...|+
T Consensus 118 ~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~ 197 (378)
T 3q15_A 118 VEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKH 197 (378)
T ss_dssp HHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCC
Confidence 355666655432 2 356788999999999999999998887552 1 23468889999999999
Q ss_pred hHHHHHHHHHhHhCCCC-CChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-----C---ChhhHHHH
Q 045555 63 FREALTLFREMQTSNIR-RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR-----K---DKFTWTAM 133 (175)
Q Consensus 63 ~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~---~~~~~~~l 133 (175)
+++|.+.|++..+.... ++.. ....++..+..+|...|++++|.+.|++..+ . ...++..+
T Consensus 198 ~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 198 YDKALPHLEAALELAMDIQNDR----------FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 99999999998763210 1111 1134567899999999999999999999854 2 34577888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC
Q 045555 134 IVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
...+.+.|++++|.+.+++..+.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 89999999999999999998864
No 100
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.61 E-value=2e-06 Score=61.82 Aligned_cols=141 Identities=12% Similarity=0.038 Sum_probs=101.2
Q ss_pred HHHHhhccCC---CcHHHHHHHHHHHHhcCChhHHHHHhhcCCCC-----ChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 4 ALEIFGNMKN---KDVISWTTIVSGYINRGQVDIARQYFAQMPER-----DYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 4 A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
|+..|++... ++..+...+...+...|++++|++.+.+...+ +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3455554442 56666678889999999999999999987432 455678889999999999999999999988
Q ss_pred CCCCCChHHHHHhhhccCcchhHHHHHHHH----HHhcCCHHHHHHHHHhhcCC--ChhhHHHHHHHHHhcCChhHHHHH
Q 045555 76 SNIRRDEFTTVRILTTFNNDIFVGIALIDM----YCKCGDVEKAQRVFWKMLRK--DKFTWTAMIVGLAISGHGDTALDM 149 (175)
Q Consensus 76 ~~~~p~~~~~~~l~~~~~~~~~~~~~li~~----~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~ 149 (175)
. .||.... +..+...+..+ ....+++.+|..+|+++... +..+-..++.++.+.|++++|.+.
T Consensus 165 ~--~~d~~~~---------~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~ 233 (310)
T 3mv2_B 165 A--IEDTVSG---------DNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGI 233 (310)
T ss_dssp H--SCHHHHH---------HHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred c--Ccccccc---------chHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHH
Confidence 4 2310000 12222345545 33344999999999999653 323444555588999999999999
Q ss_pred HHHHHH
Q 045555 150 FSQMLR 155 (175)
Q Consensus 150 ~~~m~~ 155 (175)
++.+.+
T Consensus 234 L~~l~~ 239 (310)
T 3mv2_B 234 VELLLS 239 (310)
T ss_dssp HHHHHS
T ss_pred HHHHHH
Confidence 997764
No 101
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.61 E-value=2.3e-07 Score=68.57 Aligned_cols=131 Identities=12% Similarity=0.059 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHhhcCCC-----CC----hhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHH
Q 045555 16 VISWTTIVSGYINRGQVDIARQYFAQMPE-----RD----YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTV 86 (175)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 86 (175)
..++..+...|...|++++|...|++..+ ++ ...+..+...+...|++++|...+++..+.......
T Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---- 298 (411)
T 4a1s_A 223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGE---- 298 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC----
Confidence 45788899999999999999999998764 12 237889999999999999999999998774211000
Q ss_pred HhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC---------ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 87 RILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK---------DKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 87 ~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
......++..+...|.+.|++++|.+.+++...- ...++..+...|...|++++|.+.|++..+
T Consensus 299 -----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 299 -----REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp -----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 0012456678999999999999999999988431 244788899999999999999999999865
No 102
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.60 E-value=4.1e-07 Score=57.97 Aligned_cols=130 Identities=16% Similarity=0.121 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHhhcCCC-----CC----hhHHHHHHHHHhccCChHHHHHHHHHhHhCCCC-CChHHH
Q 045555 16 VISWTTIVSGYINRGQVDIARQYFAQMPE-----RD----YVLWTAMIDGYLRVNRFREALTLFREMQTSNIR-RDEFTT 85 (175)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~ 85 (175)
..++..+...|...|++++|...+++..+ ++ ..++..+...+...|++++|...+++..+.... ++..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-- 86 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA-- 86 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH--
Confidence 45788889999999999999999998764 12 246888999999999999999999998764211 1111
Q ss_pred HHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-----C----ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 86 VRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR-----K----DKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
.....+..+...+...|++++|.+.+++... . ....+..+...+...|++++|.+.+++..+
T Consensus 87 --------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 87 --------VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp --------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 1134567889999999999999999998742 1 235677888899999999999999998765
No 103
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.60 E-value=7.1e-07 Score=64.15 Aligned_cols=141 Identities=11% Similarity=0.114 Sum_probs=102.6
Q ss_pred chHHHHhhccCC-----CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC--C-----ChhHHHHHHHHH--hc--cCChHH
Q 045555 2 GFALEIFGNMKN-----KDVISWTTIVSGYINRGQVDIARQYFAQMPE--R-----DYVLWTAMIDGY--LR--VNRFRE 65 (175)
Q Consensus 2 ~~A~~~~~~m~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-----~~~~~~~li~~~--~~--~~~~~~ 65 (175)
++|++++..... -+...+..++..+.+.|+.+.|.+.++.|.+ | +..+...|..++ .. .++..+
T Consensus 117 eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~ 196 (310)
T 3mv2_B 117 DKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATS 196 (310)
T ss_dssp HHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTH
T ss_pred HHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHH
Confidence 578888888743 2667888999999999999999999999875 4 244555555552 22 348999
Q ss_pred HHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC------------C-ChhhHHH
Q 045555 66 ALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR------------K-DKFTWTA 132 (175)
Q Consensus 66 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~------------~-~~~~~~~ 132 (175)
|..+|+++.+.. |+.. ....++.++.+.|++++|++.++.+.+ | +..+.-.
T Consensus 197 A~~~f~El~~~~--p~~~--------------~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN 260 (310)
T 3mv2_B 197 NFYYYEELSQTF--PTWK--------------TQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLAN 260 (310)
T ss_dssp HHHHHHHHHTTS--CSHH--------------HHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHH
T ss_pred HHHHHHHHHHhC--CCcc--------------cHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHH
Confidence 999999997753 3211 112344489999999999999987633 3 5667756
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCcH
Q 045555 133 MIVGLAISGHGDTALDMFSQMLRASIRLDE 162 (175)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 162 (175)
+|......|+ +|.+++.++.+. .|+.
T Consensus 261 ~i~l~~~lgk--~a~~l~~qL~~~--~P~h 286 (310)
T 3mv2_B 261 QITLALMQGL--DTEDLTNQLVKL--DHEH 286 (310)
T ss_dssp HHHHHHHTTC--TTHHHHHHHHHT--TCCC
T ss_pred HHHHHHHhCh--HHHHHHHHHHHh--CCCC
Confidence 6666666776 899999999874 4543
No 104
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.59 E-value=2.8e-06 Score=52.10 Aligned_cols=104 Identities=10% Similarity=0.116 Sum_probs=83.0
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C
Q 045555 48 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K 125 (175)
Q Consensus 48 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~ 125 (175)
..|..+...+...|++++|...|++..+.. | .+...+..+...|.+.|++++|...++.... |
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~-------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 69 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD--P-------------TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--C-------------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc
Confidence 457788888999999999999999998854 2 2344557889999999999999999999843 2
Q ss_pred -C-------hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHH
Q 045555 126 -D-------KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGV 168 (175)
Q Consensus 126 -~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 168 (175)
+ ..+|..+...+...|++++|.+.|++..+. .|+......+
T Consensus 70 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 70 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 2 678888999999999999999999999875 3555444433
No 105
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.59 E-value=2.1e-06 Score=54.43 Aligned_cols=104 Identities=13% Similarity=-0.062 Sum_probs=79.6
Q ss_pred HhhcCCCC---ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHH
Q 045555 38 YFAQMPER---DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEK 114 (175)
Q Consensus 38 ~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~ 114 (175)
.|++..+. +...+..+...+.+.|++++|+..|++..... | .+...|..+..+|.+.|++++
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p-------------~~~~~~~~lg~~~~~~g~~~~ 70 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD--H-------------YDARYFLGLGACRQSLGLYEQ 70 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-------------TCHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--C-------------ccHHHHHHHHHHHHHHhhHHH
Confidence 34444432 44456677788889999999999999988754 2 244556778889999999999
Q ss_pred HHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 115 AQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 115 a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
|...|+.... | +...|..+..+|...|++++|.+.|++..+.
T Consensus 71 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 71 ALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999998843 3 6677888889999999999999999988764
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.59 E-value=2.2e-06 Score=66.48 Aligned_cols=126 Identities=9% Similarity=-0.011 Sum_probs=89.0
Q ss_pred cCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHH
Q 045555 29 RGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDM 105 (175)
Q Consensus 29 ~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~ 105 (175)
.|++++|...|++..+ .+...|..+...+.+.|++++|.+.|++..+.. | .+...+..+..+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p-------------~~~~~~~~lg~~ 66 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--P-------------GHPEAVARLGRV 66 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--T-------------TCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-------------CCHHHHHHHHHH
Confidence 4788999999998775 357789999999999999999999999999853 2 234556789999
Q ss_pred HHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHh
Q 045555 106 YCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLS 170 (175)
Q Consensus 106 ~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 170 (175)
|.+.|++++|.+.+++..+ | +...|..+...|.+.|++++|.+.|++..+.. ..+...+..+..
T Consensus 67 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 133 (568)
T 2vsy_A 67 RWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLN 133 (568)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 9999999999999999843 3 67789999999999999999999999998752 123444444433
No 107
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.59 E-value=5.8e-07 Score=58.96 Aligned_cols=108 Identities=10% Similarity=0.166 Sum_probs=88.0
Q ss_pred chHHHHhhccCC---CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHH-HhccCCh--HHHHHHHHH
Q 045555 2 GFALEIFGNMKN---KDVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDG-YLRVNRF--REALTLFRE 72 (175)
Q Consensus 2 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~-~~~~~~~--~~a~~~~~~ 72 (175)
++|...++...+ .+...|..+...|...|++++|...|++..+ .+...+..+... +.+.|++ ++|...+++
T Consensus 27 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~ 106 (177)
T 2e2e_A 27 EAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDK 106 (177)
T ss_dssp CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 456666665543 4778999999999999999999999998764 467778888888 7789998 999999999
Q ss_pred hHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 73 m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
..+.. |+ +...+..+...|.+.|++++|...|+...+
T Consensus 107 al~~~--p~-------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 107 ALALD--SN-------------EITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHC--TT-------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhC--CC-------------cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 98864 22 344556789999999999999999999854
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.59 E-value=2.8e-06 Score=55.76 Aligned_cols=137 Identities=13% Similarity=0.116 Sum_probs=98.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCc
Q 045555 18 SWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN 94 (175)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 94 (175)
....+...+.+.|++++|...|++..+ .+...+..+...+.+.|++++|+..+++...... ++..+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~--------- 76 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYK--------- 76 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHH---------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHH---------
Confidence 345667788999999999999999885 3677899999999999999999999999877532 32222
Q ss_pred chhHHHHHHHH-HHhcCCHHHHHHHHHhhc--CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-cHHHHHHHH
Q 045555 95 DIFVGIALIDM-YCKCGDVEKAQRVFWKML--RK-DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL-DEVTYVGVL 169 (175)
Q Consensus 95 ~~~~~~~li~~-~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll 169 (175)
...... +.+.+...+|...++... .| +...+..+...+...|++++|.+.|+++.+..-.+ +...+..+.
T Consensus 77 -----~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~ 151 (176)
T 2r5s_A 77 -----SLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFM 151 (176)
T ss_dssp -----HHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHH
T ss_pred -----HHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHH
Confidence 111111 122223334677777774 34 67889999999999999999999999998764332 233444444
Q ss_pred h
Q 045555 170 S 170 (175)
Q Consensus 170 ~ 170 (175)
.
T Consensus 152 ~ 152 (176)
T 2r5s_A 152 D 152 (176)
T ss_dssp H
T ss_pred H
Confidence 3
No 109
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.58 E-value=3.7e-06 Score=52.41 Aligned_cols=95 Identities=12% Similarity=-0.070 Sum_probs=52.7
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-
Q 045555 46 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR- 124 (175)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~- 124 (175)
+...|..+...+...|++++|+..|++..... | .+...+..+..+|...|++++|...++...+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~-------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 72 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--P-------------LVAVYYTNRALCYLKMQQPEQALADCRRALEL 72 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--c-------------CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 44455555555666666666666666655532 1 1233344555566666666666666665532
Q ss_pred -C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 125 -K-DKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 125 -~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
| +...|..+..++...|++++|.+.|++..+
T Consensus 73 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 73 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 445555666666666666666666666553
No 110
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.57 E-value=1.8e-07 Score=70.94 Aligned_cols=126 Identities=10% Similarity=0.090 Sum_probs=102.0
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC--C-C---------------hhHHHHHHHHHhccCChHHHHHHHHHhHhC
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE--R-D---------------YVLWTAMIDGYLRVNRFREALTLFREMQTS 76 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~---------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (175)
+...+..+...|.+.|++++|...|++..+ | + ...|..+..+|.+.|++++|+..+++.++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 456788999999999999999999998764 3 3 578999999999999999999999999985
Q ss_pred CCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHH-HHHHH
Q 045555 77 NIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTAL-DMFSQ 152 (175)
Q Consensus 77 ~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~-~~~~~ 152 (175)
. | .+...+..+..+|.+.|++++|...|+...+ | +...+..+..++.+.|+.+++. ..++.
T Consensus 347 ~--p-------------~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~ 411 (457)
T 1kt0_A 347 D--S-------------ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYAN 411 (457)
T ss_dssp S--T-------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C--C-------------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 2 2345567899999999999999999999855 3 5678888999999999888875 45666
Q ss_pred HHH
Q 045555 153 MLR 155 (175)
Q Consensus 153 m~~ 155 (175)
|..
T Consensus 412 ~f~ 414 (457)
T 1kt0_A 412 MFK 414 (457)
T ss_dssp C--
T ss_pred HHh
Confidence 643
No 111
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.57 E-value=2.5e-06 Score=52.61 Aligned_cols=96 Identities=13% Similarity=0.074 Sum_probs=82.5
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-
Q 045555 46 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR- 124 (175)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~- 124 (175)
+...|..+...+.+.|++++|+..|++..+.. | .+...+..+...|...|++++|...+++..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~-------------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 79 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--P-------------KDAKLYSNRAACYTKLLEFQLALKDCEECIQL 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--T-------------TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C-------------CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 55678899999999999999999999998853 2 2345567899999999999999999999843
Q ss_pred -C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 125 -K-DKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 125 -~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
| +...|..+...+.+.|++++|.+.|++..+.
T Consensus 80 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 80 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3 6778899999999999999999999998874
No 112
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.56 E-value=6.1e-07 Score=65.89 Aligned_cols=130 Identities=16% Similarity=0.107 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHhhcCCC-----CC----hhHHHHHHHHHhccCChHHHHHHHHHhHhCCCC-CChHHH
Q 045555 16 VISWTTIVSGYINRGQVDIARQYFAQMPE-----RD----YVLWTAMIDGYLRVNRFREALTLFREMQTSNIR-RDEFTT 85 (175)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~ 85 (175)
..++..+...|...|++++|...+++..+ ++ ..++..+...+...|++++|...+++..+.... ++..
T Consensus 187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-- 264 (406)
T 3sf4_A 187 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA-- 264 (406)
T ss_dssp HHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCch--
Confidence 45788999999999999999999998763 22 337889999999999999999999998764211 1110
Q ss_pred HHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-----CC----hhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 86 VRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR-----KD----KFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
....++..+...|.+.|++++|.+.++.... .+ ..++..+...|...|++++|.+.+++..+
T Consensus 265 --------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 265 --------VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp --------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1144667899999999999999999998843 12 55788899999999999999999998764
No 113
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.56 E-value=5.3e-07 Score=64.20 Aligned_cols=131 Identities=17% Similarity=0.111 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHhhcCCC-----CC----hhHHHHHHHHHhccCChHHHHHHHHHhHhCCCC-CChHHH
Q 045555 16 VISWTTIVSGYINRGQVDIARQYFAQMPE-----RD----YVLWTAMIDGYLRVNRFREALTLFREMQTSNIR-RDEFTT 85 (175)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~ 85 (175)
..++..+...+...|++++|...+++..+ ++ ..++..+...+...|++++|...+++..+.... ++..
T Consensus 183 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-- 260 (338)
T 3ro2_A 183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA-- 260 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH--
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchh--
Confidence 45788899999999999999999998763 12 337888999999999999999999998763211 1110
Q ss_pred HHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-----CC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 86 VRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR-----KD----KFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
....++..+...|...|++++|...+++... .+ ..++..+...|.+.|++++|.+.+++..+.
T Consensus 261 --------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 261 --------VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp --------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred --------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1144567899999999999999999998743 12 447888999999999999999999998864
No 114
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.55 E-value=2.7e-06 Score=55.12 Aligned_cols=94 Identities=10% Similarity=0.030 Sum_probs=57.1
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--
Q 045555 47 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR-- 124 (175)
Q Consensus 47 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-- 124 (175)
...+..+...+.+.|++++|+..|++..+.. | .+...+..+..+|.+.|++++|...|+...+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p-------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 75 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA--P-------------ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD 75 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--T-------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-------------cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 3445566666666666666666666666532 1 1333445666666666666666666666632
Q ss_pred C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 125 K-DKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 125 ~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
| +...|..+..+|...|++++|.+.|++.++
T Consensus 76 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 76 PKYSKAWSRLGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2 455666666666666666666666666654
No 115
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.55 E-value=1.2e-06 Score=62.31 Aligned_cols=131 Identities=13% Similarity=0.096 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhcCCC-------C--ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHh
Q 045555 18 SWTTIVSGYINRGQVDIARQYFAQMPE-------R--DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRI 88 (175)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~-------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 88 (175)
.|......|...|++++|...|.+..+ + ...+|+.+...|.+.|++++|+..|++..+.......
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~------ 112 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ------ 112 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC------
Confidence 577778888899999999999987653 1 2457999999999999999999999998773210000
Q ss_pred hhccCcchhHHHHHHHHHHhc-CCHHHHHHHHHhhcC--C---C----hhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 045555 89 LTTFNNDIFVGIALIDMYCKC-GDVEKAQRVFWKMLR--K---D----KFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157 (175)
Q Consensus 89 ~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~--~---~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 157 (175)
......+++.+...|... |++++|...|++..+ | + ..+|+.+...+.+.|++++|.+.|++..+..
T Consensus 113 ---~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 188 (292)
T 1qqe_A 113 ---FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS 188 (292)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 000134667899999996 999999999999843 2 1 3578889999999999999999999998854
No 116
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.55 E-value=2.7e-06 Score=57.74 Aligned_cols=149 Identities=12% Similarity=-0.026 Sum_probs=117.4
Q ss_pred chHHHHhhccCC-CcHHHHHHHHHHHHhcC----ChhHHHHHhhcCCCC-ChhHHHHHHHHHhc----cCChHHHHHHHH
Q 045555 2 GFALEIFGNMKN-KDVISWTTIVSGYINRG----QVDIARQYFAQMPER-DYVLWTAMIDGYLR----VNRFREALTLFR 71 (175)
Q Consensus 2 ~~A~~~~~~m~~-~~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~ 71 (175)
++|+++|+...+ .++.++..+...|.+ + ++++|...|++..++ +...+..|-..|.. .+++++|+..|+
T Consensus 35 ~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 113 (212)
T 3rjv_A 35 QKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQ 113 (212)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Confidence 568888887765 477888899999988 7 899999999988754 67778888888887 889999999999
Q ss_pred HhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHh----cCCHHHHHHHHHhhcC--CChhhHHHHHHHHHhc-C---
Q 045555 72 EMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCK----CGDVEKAQRVFWKMLR--KDKFTWTAMIVGLAIS-G--- 141 (175)
Q Consensus 72 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~-g--- 141 (175)
+..+.|... .....+..|...|.. .+++++|...|+...+ .+...+..+-..|... |
T Consensus 114 ~A~~~~~~~-------------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~ 180 (212)
T 3rjv_A 114 DAARDSESD-------------AAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFI 180 (212)
T ss_dssp HHTSSTTSH-------------HHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTB
T ss_pred HHHHcCCCc-------------chHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCC
Confidence 999876310 013444678888888 8899999999999854 4677788888887653 3
Q ss_pred --ChhHHHHHHHHHHHCCCCCcHHH
Q 045555 142 --HGDTALDMFSQMLRASIRLDEVT 164 (175)
Q Consensus 142 --~~~~a~~~~~~m~~~g~~p~~~t 164 (175)
+.++|.+.|++..+.|...-...
T Consensus 181 ~~d~~~A~~~~~~A~~~g~~~A~~~ 205 (212)
T 3rjv_A 181 EPNKQKALHWLNVSCLEGFDTGCEE 205 (212)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 89999999999998875544433
No 117
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.55 E-value=7e-06 Score=49.30 Aligned_cols=95 Identities=16% Similarity=0.079 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--
Q 045555 47 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR-- 124 (175)
Q Consensus 47 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-- 124 (175)
...+..+...+...|++++|...|++..... | .+...+..+...+.+.|++++|...++....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~-------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 68 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD--P-------------HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK 68 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--C-------------CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 3456777778888888888888888887743 1 2344456778888888888888888888743
Q ss_pred C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 125 K-DKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 125 ~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
| +...|..+...+...|++++|.+.+++..+.
T Consensus 69 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 69 PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 3 5667888888888889999999888888754
No 118
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.53 E-value=1.3e-06 Score=57.56 Aligned_cols=111 Identities=14% Similarity=0.082 Sum_probs=76.6
Q ss_pred chHHHHhhccCC--C-cHHHHHHHHHHHHhcCChhHHHHHhhcCCC---C------------------------------
Q 045555 2 GFALEIFGNMKN--K-DVISWTTIVSGYINRGQVDIARQYFAQMPE---R------------------------------ 45 (175)
Q Consensus 2 ~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~------------------------------ 45 (175)
++|++.|++..+ | +..++..+...|.+.|++++|...+..... .
T Consensus 22 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~ 101 (184)
T 3vtx_A 22 DGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIA 101 (184)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567777777654 3 667788888888888888888887776542 2
Q ss_pred ----ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 045555 46 ----DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWK 121 (175)
Q Consensus 46 ----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 121 (175)
+...+..+...+.+.|++++|++.|++..+.. +.+...+..+..+|.+.|++++|.+.|++
T Consensus 102 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~---------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 166 (184)
T 3vtx_A 102 LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK---------------PGFIRAYQSIGLAYEGKGLRDEAVKYFKK 166 (184)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc---------------chhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 23344445555555555555555555555432 33466778999999999999999999999
Q ss_pred hcCCCh
Q 045555 122 MLRKDK 127 (175)
Q Consensus 122 ~~~~~~ 127 (175)
..+.+.
T Consensus 167 al~~~p 172 (184)
T 3vtx_A 167 ALEKEE 172 (184)
T ss_dssp HHHTTH
T ss_pred HHhCCc
Confidence 866544
No 119
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.52 E-value=1.1e-05 Score=49.35 Aligned_cols=107 Identities=12% Similarity=0.085 Sum_probs=85.9
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-
Q 045555 46 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR- 124 (175)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~- 124 (175)
+...+..+...+...|++++|+..+++..... | .+...+..+...+...|++++|...++....
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~-------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 75 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN--P-------------ANAVYFCNRAAAYSKLGNYAGAVQDCERAICI 75 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--C-------------CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc
Confidence 45578888899999999999999999998753 2 2344567889999999999999999999843
Q ss_pred -C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-cHHHHHHHH
Q 045555 125 -K-DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRL-DEVTYVGVL 169 (175)
Q Consensus 125 -~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll 169 (175)
| +...|..+...+...|++++|.+.|++..+. .| +...+..+-
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~ 121 (131)
T 2vyi_A 76 DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--DPDNETYKSNLK 121 (131)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CccchHHHHHHH
Confidence 3 5778889999999999999999999998875 33 344444433
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.52 E-value=1.1e-06 Score=62.56 Aligned_cols=144 Identities=9% Similarity=-0.024 Sum_probs=105.2
Q ss_pred chHHHHhhccCC-----Cc----HHHHHHHHHHHHhcCChhHHHHHhhcCCC-----CC----hhHHHHHHHHHhccCCh
Q 045555 2 GFALEIFGNMKN-----KD----VISWTTIVSGYINRGQVDIARQYFAQMPE-----RD----YVLWTAMIDGYLRVNRF 63 (175)
Q Consensus 2 ~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~~~~ 63 (175)
++|.++++...+ |+ ...+..+...+...|++++|...|++..+ ++ ..+++.+...|...|++
T Consensus 92 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 171 (293)
T 3u3w_A 92 KEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYL 171 (293)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCH
Confidence 456666666543 22 22444577778888899999999987542 23 23688999999999999
Q ss_pred HHHHHHHHHhHhCC--CCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC---------ChhhHHH
Q 045555 64 REALTLFREMQTSN--IRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK---------DKFTWTA 132 (175)
Q Consensus 64 ~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~ 132 (175)
++|+..|++..+.- ...+.. ....++..+...|.+.|++++|...+++..+- -..+|..
T Consensus 172 ~~A~~~~~~al~~~~~~~~~~~----------~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 172 KKGIDLFEQILKQLEALHDNEE----------FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHHHHHHHHHHHSSCCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccchh----------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99999999998521 101111 11336678999999999999999999987431 1567888
Q ss_pred HHHHHHhcCC-hhHHHHHHHHHHH
Q 045555 133 MIVGLAISGH-GDTALDMFSQMLR 155 (175)
Q Consensus 133 li~~~~~~g~-~~~a~~~~~~m~~ 155 (175)
+..+|.+.|+ +++|.+.|++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999999995 6999999988764
No 121
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.50 E-value=1.5e-06 Score=62.36 Aligned_cols=129 Identities=7% Similarity=-0.054 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHhhcCCC-------C--ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHH
Q 045555 16 VISWTTIVSGYINRGQVDIARQYFAQMPE-------R--DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTV 86 (175)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~-------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 86 (175)
..+|+.+...|.+.|++++|...|++..+ + -..+++.+...|.. |++++|+..|++........+...
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~-- 152 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLR-- 152 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHH--
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChh--
Confidence 45788999999999999999998887542 1 13568888888888 999999999999876321110000
Q ss_pred HhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-----CC----hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 045555 87 RILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR-----KD----KFTWTAMIVGLAISGHGDTALDMFSQML 154 (175)
Q Consensus 87 ~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (175)
....+++.+...|.+.|++++|.+.|++... ++ ...+..+...+...|++++|.+.|++..
T Consensus 153 -------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 153 -------QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp -------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred -------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 0134667899999999999999999999854 11 2356667777888899999999999987
No 122
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.50 E-value=6.1e-06 Score=49.58 Aligned_cols=96 Identities=14% Similarity=0.054 Sum_probs=81.1
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhc
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT 91 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (175)
+...+..+...+...|++++|...|+...+ .+...+..+...+.+.|++++|...+++..+.. |
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~----------- 69 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--P----------- 69 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--T-----------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--c-----------
Confidence 456788889999999999999999998753 467788999999999999999999999998854 2
Q ss_pred cCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC
Q 045555 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK 125 (175)
Q Consensus 92 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 125 (175)
.+...+..+..++.+.|++++|.+.++...+.
T Consensus 70 --~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 70 --DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp --TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred --ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 23445578899999999999999999998553
No 123
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.49 E-value=4.3e-06 Score=56.51 Aligned_cols=123 Identities=16% Similarity=0.141 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHH----------------HHHHHhccCChHHHHHHHHHhHhCC
Q 045555 17 ISWTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTA----------------MIDGYLRVNRFREALTLFREMQTSN 77 (175)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~----------------li~~~~~~~~~~~a~~~~~~m~~~~ 77 (175)
...-.....+.+.|++++|...|++..+ | +...|.. +...+.+.|++++|+..|++..+..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 3444556677899999999999998774 3 3445666 8889999999999999999999854
Q ss_pred CCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCC--hhHHHHHHHH
Q 045555 78 IRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGH--GDTALDMFSQ 152 (175)
Q Consensus 78 ~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~--~~~a~~~~~~ 152 (175)
| .+...+..+...|...|++++|...|++..+ | +...|..+...|...|+ ...+...++.
T Consensus 85 --p-------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~ 149 (208)
T 3urz_A 85 --P-------------NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKK 149 (208)
T ss_dssp --T-------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred --C-------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2 2455667899999999999999999999844 4 67788888888876553 3445555555
Q ss_pred HH
Q 045555 153 ML 154 (175)
Q Consensus 153 m~ 154 (175)
..
T Consensus 150 ~~ 151 (208)
T 3urz_A 150 LS 151 (208)
T ss_dssp --
T ss_pred Hh
Confidence 43
No 124
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.49 E-value=1.6e-05 Score=56.48 Aligned_cols=127 Identities=9% Similarity=0.139 Sum_probs=96.9
Q ss_pred HHHHHHHHHhcCChhHHHHHhhcCCC-----CC----hhHHHHHHHHHhccCChHHHHHHHHHhHhCCCC-CChHHHHHh
Q 045555 19 WTTIVSGYINRGQVDIARQYFAQMPE-----RD----YVLWTAMIDGYLRVNRFREALTLFREMQTSNIR-RDEFTTVRI 88 (175)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l 88 (175)
+...+..+.+.|++++|..++++..+ ++ ...+..+...+...|++++|+..|++..+.... ++..
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~----- 152 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY----- 152 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT-----
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH-----
Confidence 33457788899999999999998654 12 113445777778888999999999999984322 2211
Q ss_pred hhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC------C----ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 89 LTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR------K----DKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 89 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~------~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
....+++.+...|...|++++|...|++..+ . ...+|..+...|.+.|++++|.+.+++.++
T Consensus 153 -----~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 153 -----QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp -----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 0133568899999999999999999999852 1 234788899999999999999999998764
No 125
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.49 E-value=2e-06 Score=55.07 Aligned_cols=95 Identities=7% Similarity=0.065 Sum_probs=80.8
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhc
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT 91 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (175)
+...+..+...+.+.|++++|...|+.... .+...|..+..++.+.|++++|+..|++..... |
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p----------- 86 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--I----------- 86 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--T-----------
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--C-----------
Confidence 566788889999999999999999998753 477889999999999999999999999998854 2
Q ss_pred cCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 92 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
.+...+..+..+|...|++++|.+.|+...+
T Consensus 87 --~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 87 --XEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp --TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --CCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2344556799999999999999999998843
No 126
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.49 E-value=1.7e-06 Score=63.65 Aligned_cols=107 Identities=14% Similarity=0.116 Sum_probs=71.8
Q ss_pred hHHHHhhccCC---CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC-----CC----hhHHHHHHHHHhccCChHHHHHHH
Q 045555 3 FALEIFGNMKN---KDVISWTTIVSGYINRGQVDIARQYFAQMPE-----RD----YVLWTAMIDGYLRVNRFREALTLF 70 (175)
Q Consensus 3 ~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~ 70 (175)
+|++++..... ....+++.+...|...|++++|...|++..+ ++ ..++..+...|...|++++|+..+
T Consensus 168 ~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~ 247 (383)
T 3ulq_A 168 QAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYF 247 (383)
T ss_dssp HHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44555555432 1345788888889999999999998887653 11 246888888899999999999999
Q ss_pred HHhHhC----CCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 045555 71 REMQTS----NIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM 122 (175)
Q Consensus 71 ~~m~~~----~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 122 (175)
++..+. +..|+ ...++..+...|.+.|++++|...+++.
T Consensus 248 ~~al~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a 290 (383)
T 3ulq_A 248 KRAIAVFEESNILPS-------------LPQAYFLITQIHYKLGKIDKAHEYHSKG 290 (383)
T ss_dssp HHHHHHHHHTTCGGG-------------HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhccchh-------------HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 888773 11121 1233455666666666666666666655
No 127
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.48 E-value=2.2e-06 Score=52.97 Aligned_cols=95 Identities=11% Similarity=0.009 Sum_probs=80.9
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhc
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT 91 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (175)
+...+..+...+.+.|++++|...|++..+ .+...|..+..++.+.|++++|+..+++..+.. |
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p----------- 69 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--P----------- 69 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-----------
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--C-----------
Confidence 345788888999999999999999998763 467889999999999999999999999999854 2
Q ss_pred cCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 92 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
.+...+..+..++...|++++|...|++..+
T Consensus 70 --~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 70 --NFVRAYIRKATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp --TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 2344567899999999999999999998743
No 128
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.48 E-value=3.7e-07 Score=65.03 Aligned_cols=75 Identities=11% Similarity=0.082 Sum_probs=60.1
Q ss_pred chHHHHhhccCC--C-c----HHHHHHHHHHHHhcCChhHHHHHhhcCCC---------CChhHHHHHHHHHhccCChHH
Q 045555 2 GFALEIFGNMKN--K-D----VISWTTIVSGYINRGQVDIARQYFAQMPE---------RDYVLWTAMIDGYLRVNRFRE 65 (175)
Q Consensus 2 ~~A~~~~~~m~~--~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~---------~~~~~~~~li~~~~~~~~~~~ 65 (175)
++|...|++..+ | + ...+..+...|...|++++|.+.+++..+ ....++..+...+...|++++
T Consensus 22 ~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 101 (338)
T 3ro2_A 22 RAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDE 101 (338)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHH
Confidence 467777777654 3 2 46788999999999999999999987653 134578888999999999999
Q ss_pred HHHHHHHhHhC
Q 045555 66 ALTLFREMQTS 76 (175)
Q Consensus 66 a~~~~~~m~~~ 76 (175)
|...+++..+.
T Consensus 102 A~~~~~~al~~ 112 (338)
T 3ro2_A 102 AIVCCQRHLDI 112 (338)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998664
No 129
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.47 E-value=2.5e-06 Score=54.04 Aligned_cols=104 Identities=12% Similarity=0.108 Sum_probs=82.4
Q ss_pred HHhhccCC--C-cHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCC
Q 045555 6 EIFGNMKN--K-DVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79 (175)
Q Consensus 6 ~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 79 (175)
..|+...+ | +...+..+...+.+.|++++|...|+.... .+...|..+..++.+.|++++|+..|++..+..
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-- 82 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-- 82 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--
Confidence 34555554 3 455677788889999999999999998763 477789999999999999999999999999864
Q ss_pred CChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 80 RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 80 p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
| .+...+..+..+|...|++++|.+.|+...+
T Consensus 83 p-------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 83 I-------------NEPRFPFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp T-------------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-------------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 2334456799999999999999999998844
No 130
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.47 E-value=2.2e-06 Score=65.95 Aligned_cols=140 Identities=13% Similarity=0.119 Sum_probs=108.5
Q ss_pred chHHHHhhccCC--C-cH-HHHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHH-HHhccCChHHHHHHHHHh
Q 045555 2 GFALEIFGNMKN--K-DV-ISWTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMID-GYLRVNRFREALTLFREM 73 (175)
Q Consensus 2 ~~A~~~~~~m~~--~-~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~-~~~~~~~~~~a~~~~~~m 73 (175)
++|..+|+...+ | +. ..|...+..+.+.|++++|+.+|++..+ | +...|..... .+...|+.++|..+|++.
T Consensus 338 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~a 417 (530)
T 2ooe_A 338 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELG 417 (530)
T ss_dssp HHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 567888887664 4 33 5899999999999999999999998765 2 2222322221 233689999999999999
Q ss_pred HhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-C----hhhHHHHHHHHHhcCChhHH
Q 045555 74 QTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-D----KFTWTAMIVGLAISGHGDTA 146 (175)
Q Consensus 74 ~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~----~~~~~~li~~~~~~g~~~~a 146 (175)
.+.. +.+..+|..++..+.+.|+.++|..+|+.... | + ...|...+......|+.+.+
T Consensus 418 l~~~---------------p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~ 482 (530)
T 2ooe_A 418 LKKY---------------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 482 (530)
T ss_dssp HHHH---------------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHC---------------CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8853 22456678899999999999999999999854 2 2 33898999999999999999
Q ss_pred HHHHHHHHHC
Q 045555 147 LDMFSQMLRA 156 (175)
Q Consensus 147 ~~~~~~m~~~ 156 (175)
.++++++.+.
T Consensus 483 ~~~~~r~~~~ 492 (530)
T 2ooe_A 483 LKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 131
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.47 E-value=1.8e-06 Score=53.04 Aligned_cols=111 Identities=11% Similarity=0.047 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCC--CChHHHHHhhh
Q 045555 16 VISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR--RDEFTTVRILT 90 (175)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~l~~ 90 (175)
...+..+...+.+.|++++|...|+...+ .+...+..+...+...|++++|...+++..+.... ++...
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------ 77 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ------ 77 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHH------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHH------
Confidence 45788899999999999999999998653 46778899999999999999999999999875321 11000
Q ss_pred ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--CChhhHHHHHHH
Q 045555 91 TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--KDKFTWTAMIVG 136 (175)
Q Consensus 91 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~ 136 (175)
....+..+..+|.+.|++++|.+.|+...+ |+...+..+...
T Consensus 78 ----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 121 (131)
T 1elr_A 78 ----IAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQA 121 (131)
T ss_dssp ----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 044567899999999999999999999843 555554444433
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.47 E-value=3.4e-06 Score=59.96 Aligned_cols=128 Identities=9% Similarity=-0.003 Sum_probs=96.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhcCCC-----CC----hhHHHHHHHHHhccCChHHHHHHHHHhHhCC-CCCChHHHHH
Q 045555 18 SWTTIVSGYINRGQVDIARQYFAQMPE-----RD----YVLWTAMIDGYLRVNRFREALTLFREMQTSN-IRRDEFTTVR 87 (175)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ 87 (175)
.+..+...+...|++++|...|++..+ .+ ..+|+.+...|...|++++|+..|++..+.- ..|+...
T Consensus 117 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~--- 193 (293)
T 2qfc_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEE--- 193 (293)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH---
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcccc---
Confidence 345566777888999999999886532 11 3478899999999999999999999987421 1111110
Q ss_pred hhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-------ChhhHHHHHHHHHhcCChhHH-HHHHHHHH
Q 045555 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-------DKFTWTAMIVGLAISGHGDTA-LDMFSQML 154 (175)
Q Consensus 88 l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-------~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 154 (175)
....++..+...|.+.|++++|...+++..+ + -..+|..+...|.+.|++++| ...+++..
T Consensus 194 ------~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 194 ------FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp ------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ------chHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 0124667899999999999999999998743 1 156788899999999999999 77777754
No 133
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=2.6e-05 Score=48.94 Aligned_cols=99 Identities=12% Similarity=0.018 Sum_probs=75.8
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-
Q 045555 46 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR- 124 (175)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~- 124 (175)
+...+..+...+.+.|++++|+..|++..+.. |+... ....+..+..+|.+.|++++|...++...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 94 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQD----------QAVLHRNRAACHLKLEDYDKAETEASKAIEK 94 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchH----------HHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 56678888888888899999999998888743 33100 034456788888889999999988888743
Q ss_pred -C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 125 -K-DKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 125 -~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
| +...|..+..++...|++++|.+.|++..+.
T Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 95 DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3 5677888888888999999999999888764
No 134
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.46 E-value=4e-06 Score=54.30 Aligned_cols=96 Identities=9% Similarity=-0.023 Sum_probs=83.1
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhh
Q 045555 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT 90 (175)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 90 (175)
.+...+..+...+.+.|++++|...|++..+ .+...|..+..+|.+.|++++|+..|++.++.. |+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~--------- 77 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PK--------- 77 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT---------
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CC---------
Confidence 3567889999999999999999999998763 477889999999999999999999999999864 22
Q ss_pred ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 91 TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 91 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
+...|..+..+|.+.|++++|...|++..+
T Consensus 78 ----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 78 ----YSKAWSRLGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 355567899999999999999999999844
No 135
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.45 E-value=7.6e-06 Score=50.93 Aligned_cols=105 Identities=13% Similarity=0.098 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCC--CCChHHHHHhhh
Q 045555 16 VISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI--RRDEFTTVRILT 90 (175)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~ 90 (175)
..++..+...+.+.|++++|++.|++..+ .+...|+.+..+|.+.|++++|++.+++.++... .++...
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~------ 81 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKL------ 81 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHH------
Confidence 45788899999999999999999998663 4677899999999999999999999999987431 111111
Q ss_pred ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhc--CCChhhH
Q 045555 91 TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML--RKDKFTW 130 (175)
Q Consensus 91 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~~~~~ 130 (175)
-..+|..+..++...|++++|.+.|++.. .|+..+.
T Consensus 82 ----~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~ 119 (127)
T 4gcn_A 82 ----IAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELV 119 (127)
T ss_dssp ----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHH
T ss_pred ----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHH
Confidence 12356778899999999999999999874 3555443
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.44 E-value=2.4e-05 Score=55.53 Aligned_cols=129 Identities=10% Similarity=0.033 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhcCCC--CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcc
Q 045555 18 SWTTIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNND 95 (175)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 95 (175)
..-.....+...|++++|.++|..+.. |+......+...+.+.++|++|+..|+...+. |+... .
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~~----------~ 170 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKFL----------A 170 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHHH----------H
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCccc----------H
Confidence 445677888999999999999999874 54436667777899999999999999855442 11110 1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhhcCCC------hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc
Q 045555 96 IFVGIALIDMYCKCGDVEKAQRVFWKMLRKD------KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161 (175)
Q Consensus 96 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 161 (175)
...+..+-.++.+.|++++|.+.|++....+ .........++.+.|+.++|...|+++... .|+
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~ 240 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPE 240 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence 2234578999999999999999999985322 235666777888999999999999999975 455
No 137
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.44 E-value=3.7e-06 Score=52.44 Aligned_cols=96 Identities=10% Similarity=0.008 Sum_probs=82.8
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhh
Q 045555 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILT 90 (175)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 90 (175)
.+...+..+...+.+.|++++|...|+...+ .+...|..+..++.+.|++++|+..+++..+.. |
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p---------- 74 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD--G---------- 74 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T----------
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--c----------
Confidence 5778899999999999999999999998653 467789999999999999999999999998854 2
Q ss_pred ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 91 TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 91 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
.+...+..+..+|...|++++|...|+...+
T Consensus 75 ---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 75 ---QSVKAHFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp ---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2345567899999999999999999998843
No 138
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.44 E-value=3.2e-06 Score=52.20 Aligned_cols=93 Identities=13% Similarity=-0.056 Sum_probs=78.7
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-
Q 045555 49 LWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K- 125 (175)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~- 125 (175)
.+..+...+.+.|++++|+..|++..+.. | .+...|..+..++.+.|++++|...|+...+ |
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P-------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 83 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE--P-------------EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK 83 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS--T-------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC--C-------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 45667778899999999999999999854 2 2455667899999999999999999999844 4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 126 DKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
+...|..+..++...|++++|.+.|++.++.
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 84 DIAVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6778899999999999999999999998853
No 139
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.44 E-value=1.9e-05 Score=60.16 Aligned_cols=137 Identities=10% Similarity=0.012 Sum_probs=73.4
Q ss_pred hHHHHhhccCC-CcHHHHHHHHHHHHh----cCChhHHHHHhhcCCC-CChhHHHHHHHHHhc----cCChHHHHHHHHH
Q 045555 3 FALEIFGNMKN-KDVISWTTIVSGYIN----RGQVDIARQYFAQMPE-RDYVLWTAMIDGYLR----VNRFREALTLFRE 72 (175)
Q Consensus 3 ~A~~~~~~m~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~ 72 (175)
+|..+|+...+ .++.++..+...|.. .+++++|...|++..+ .+...+..|-..|.. .+++++|+..|++
T Consensus 61 ~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 140 (490)
T 2xm6_A 61 QAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRL 140 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 45555554433 355666666666666 6777777777776554 345555666666665 5677777777777
Q ss_pred hHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHh----cCCHHHHHHHHHhhcCC-ChhhHHHHHHHHHh----cCCh
Q 045555 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCK----CGDVEKAQRVFWKMLRK-DKFTWTAMIVGLAI----SGHG 143 (175)
Q Consensus 73 m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~g~~ 143 (175)
..+.|. ...+..+...|.. .+++++|.+.|+...+. +...+..+...|.. .++.
T Consensus 141 a~~~~~-----------------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 141 AAEQGR-----------------DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp HHHTTC-----------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHCCC-----------------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCH
Confidence 666542 1122234444443 44555555555544322 33444444444444 4455
Q ss_pred hHHHHHHHHHHHC
Q 045555 144 DTALDMFSQMLRA 156 (175)
Q Consensus 144 ~~a~~~~~~m~~~ 156 (175)
++|.+.|++..+.
T Consensus 204 ~~A~~~~~~a~~~ 216 (490)
T 2xm6_A 204 AISAQWYRKSATS 216 (490)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC
Confidence 5555555544443
No 140
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.42 E-value=6.2e-06 Score=56.33 Aligned_cols=130 Identities=12% Similarity=0.013 Sum_probs=95.1
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC--CC----hhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHh
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE--RD----YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRI 88 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 88 (175)
+...+..+...+.+.|++++|...|+.+.+ |+ ...+..+..++.+.|++++|+..|++..+.........+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~--- 79 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY--- 79 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH---
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHH---
Confidence 455667778889999999999999999774 42 246788899999999999999999999986432111100
Q ss_pred hhccCcchhHHHHHHHHHH------------------hcCCHHHHHHHHHhhcC--CC-hhhH-----------------
Q 045555 89 LTTFNNDIFVGIALIDMYC------------------KCGDVEKAQRVFWKMLR--KD-KFTW----------------- 130 (175)
Q Consensus 89 ~~~~~~~~~~~~~li~~~~------------------~~~~~~~a~~~~~~~~~--~~-~~~~----------------- 130 (175)
.+-.+..++. ..|++++|...|+...+ |+ ...+
T Consensus 80 ---------a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~ 150 (225)
T 2yhc_A 80 ---------VMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYE 150 (225)
T ss_dssp ---------HHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHH
Confidence 1112333333 46789999999999965 32 2222
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 131 TAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 131 ~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
-.+...|.+.|++++|...|+++++.
T Consensus 151 ~~~a~~~~~~~~~~~A~~~~~~~l~~ 176 (225)
T 2yhc_A 151 YSVAEYYTERGAWVAVVNRVEGMLRD 176 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 23456788999999999999999875
No 141
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.42 E-value=1.2e-06 Score=52.37 Aligned_cols=97 Identities=12% Similarity=0.055 Sum_probs=80.6
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhc
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT 91 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (175)
+...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|...+++..+.. |+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~---------- 72 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--ED---------- 72 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CC----------
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cc----------
Confidence 455677888899999999999999998653 467788999999999999999999999999864 22
Q ss_pred cCcchhHHHHHHHHHHhc-CCHHHHHHHHHhhcC
Q 045555 92 FNNDIFVGIALIDMYCKC-GDVEKAQRVFWKMLR 124 (175)
Q Consensus 92 ~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~ 124 (175)
..+...+..+..++.+. |++++|.+.++....
T Consensus 73 -~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 73 -EYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp -TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred -cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 00344567899999999 999999999999854
No 142
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.42 E-value=2.9e-06 Score=56.73 Aligned_cols=135 Identities=16% Similarity=0.072 Sum_probs=89.5
Q ss_pred HHHHHHHHhcCChhHHHHHhhcCCCC---ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCC-CCh--HHHHHhhhccC
Q 045555 20 TTIVSGYINRGQVDIARQYFAQMPER---DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR-RDE--FTTVRILTTFN 93 (175)
Q Consensus 20 ~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~--~~~~~l~~~~~ 93 (175)
+..+......|+++.+.+.|..-.+. ....+..+...+.+.|++++|+..|++..+.... |+. .....- ...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~ 85 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDK--KKN 85 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHH--HHH
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHH--HHH
Confidence 44555566677888888877754432 4456888888999999999999999999885321 100 000000 000
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHhhcC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 94 NDIFVGIALIDMYCKCGDVEKAQRVFWKMLR---KDKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 94 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
....++..+..+|.+.|++++|...++...+ .+...|..+..+|...|++++|.+.|++..+.
T Consensus 86 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 86 IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 0125667899999999999999999999843 36778999999999999999999999998874
No 143
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=1.2e-05 Score=50.47 Aligned_cols=96 Identities=14% Similarity=0.043 Sum_probs=81.4
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC--CC----hhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHH
Q 045555 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPE--RD----YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVR 87 (175)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 87 (175)
.+...+..+...+.+.|++++|...|+...+ |+ ...|..+...+.+.|++++|+..+++..+.. |
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~------- 96 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--G------- 96 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--S-------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--c-------
Confidence 4678899999999999999999999998764 54 6778889999999999999999999998853 2
Q ss_pred hhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 88 l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
.+...+..+..+|...|++++|...|++..+
T Consensus 97 ------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 97 ------GDVKALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp ------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2344556789999999999999999998843
No 144
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.40 E-value=7e-07 Score=66.00 Aligned_cols=131 Identities=15% Similarity=0.063 Sum_probs=98.5
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCCC---------ChhHHHHHHHHHhccCC-----------------hHHHHH
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPER---------DYVLWTAMIDGYLRVNR-----------------FREALT 68 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------~~~~~~~li~~~~~~~~-----------------~~~a~~ 68 (175)
...++..+...|...|++++|...|++..+- ...++..+...|...|+ +++|+.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 4567888888899999999999998876531 34467888888889999 888888
Q ss_pred HHHHhHhCCCC-CChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC-----C----hhhHHHHHHHHH
Q 045555 69 LFREMQTSNIR-RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK-----D----KFTWTAMIVGLA 138 (175)
Q Consensus 69 ~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~----~~~~~~li~~~~ 138 (175)
.+++..+.... .+. ......+..+...|...|++++|.+.+++..+- + ...+..+...|.
T Consensus 205 ~~~~al~~~~~~~~~----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 274 (411)
T 4a1s_A 205 FYQENLKLMRDLGDR----------GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHI 274 (411)
T ss_dssp HHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 88887552100 010 112345678889999999999999999988431 2 237888889999
Q ss_pred hcCChhHHHHHHHHHHH
Q 045555 139 ISGHGDTALDMFSQMLR 155 (175)
Q Consensus 139 ~~g~~~~a~~~~~~m~~ 155 (175)
..|++++|.+.+++..+
T Consensus 275 ~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 275 FLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp TTTCHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHH
Confidence 99999999999988765
No 145
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.39 E-value=6.1e-07 Score=71.33 Aligned_cols=125 Identities=13% Similarity=0.028 Sum_probs=100.5
Q ss_pred chHHHHhhccCC--C-cHHHHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 2 GFALEIFGNMKN--K-DVISWTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 2 ~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
++|++.|+...+ | +...|..+...|.+.|++++|...|++..+ | +...|..+..++.+.|++++ ++.|++..+
T Consensus 450 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~ 528 (681)
T 2pzi_A 450 AKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWS 528 (681)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH
T ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH
Confidence 567888887765 4 778999999999999999999999998763 3 67789999999999999999 999999988
Q ss_pred CCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCC
Q 045555 76 SNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGH 142 (175)
Q Consensus 76 ~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~ 142 (175)
.+ | .+...+..+..+|.+.|++++|.+.|++..+ | +...|..+..++...|+
T Consensus 529 ~~--P-------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 529 TN--D-------------GVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HC--T-------------TCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred hC--C-------------chHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 54 2 2345567899999999999999999999965 3 34567777777766554
No 146
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.38 E-value=1.7e-05 Score=60.41 Aligned_cols=153 Identities=12% Similarity=0.080 Sum_probs=92.0
Q ss_pred chHHHHhhccCC-CcHHHHHHHHHHHHh----cCChhHHHHHhhcCCCC-ChhHHHHHHHHHhc----cCChHHHHHHHH
Q 045555 2 GFALEIFGNMKN-KDVISWTTIVSGYIN----RGQVDIARQYFAQMPER-DYVLWTAMIDGYLR----VNRFREALTLFR 71 (175)
Q Consensus 2 ~~A~~~~~~m~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~ 71 (175)
++|.++|+...+ .+..++..|...|.. .+++++|...|++..++ +...+..|...|.. .+++++|+..|+
T Consensus 96 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 96 AQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 456677776554 466677777777877 77888888888876543 55667777777766 678888888888
Q ss_pred HhHhCCCCCChHHHHHhhh------cc----------------CcchhHHHHHHHHHHh----cCCHHHHHHHHHhhcCC
Q 045555 72 EMQTSNIRRDEFTTVRILT------TF----------------NNDIFVGIALIDMYCK----CGDVEKAQRVFWKMLRK 125 (175)
Q Consensus 72 ~m~~~~~~p~~~~~~~l~~------~~----------------~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~ 125 (175)
+..+.|. ...+..+-. ++ ..+...+..+...|.. .+++++|.+.|+...+.
T Consensus 176 ~a~~~~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 252 (490)
T 2xm6_A 176 KAAEQGN---VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ 252 (490)
T ss_dssp HHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred HHHHCCC---HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 8777641 111111100 00 1122334445555554 56666666666665443
Q ss_pred -ChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 045555 126 -DKFTWTAMIVGLAI----SGHGDTALDMFSQMLRAS 157 (175)
Q Consensus 126 -~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 157 (175)
+...+..+...|.. .++.++|.+.|++..+.|
T Consensus 253 ~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~ 289 (490)
T 2xm6_A 253 GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG 289 (490)
T ss_dssp TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC
Confidence 44455555555555 666666666666666543
No 147
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.38 E-value=2.2e-06 Score=61.45 Aligned_cols=129 Identities=12% Similarity=0.020 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhhcCCC-----C----ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHH
Q 045555 17 ISWTTIVSGYINRGQVDIARQYFAQMPE-----R----DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVR 87 (175)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 87 (175)
..|+.....|...|++++|...|.+..+ . -..+|+.+...|.+.|++++|+..|++..+.-......
T Consensus 37 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~---- 112 (307)
T 2ifu_A 37 SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTP---- 112 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCH----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCH----
Confidence 3677888889999999999999987653 1 13478899999999999999999999887631111100
Q ss_pred hhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC---------ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK---------DKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 88 l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
.....+++.+...|.+ |++++|...|++..+- ...+++.+...|.+.|++++|.+.|++..+
T Consensus 113 -----~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 113 -----DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp -----HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0113456788899988 9999999999987431 146788899999999999999999999876
No 148
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.36 E-value=2.1e-05 Score=50.35 Aligned_cols=95 Identities=9% Similarity=0.039 Sum_probs=80.9
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--
Q 045555 47 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR-- 124 (175)
Q Consensus 47 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-- 124 (175)
...+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...++...+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~ 77 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN---------------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD 77 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3457888889999999999999999998853 22345567899999999999999999999843
Q ss_pred C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 125 K-DKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 125 ~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
| +...|..+...+...|++++|.+.|++..+.
T Consensus 78 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 78 KKYIKGYYRRAASNMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3 6778899999999999999999999999875
No 149
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.36 E-value=1e-05 Score=53.73 Aligned_cols=120 Identities=14% Similarity=0.076 Sum_probs=89.4
Q ss_pred HhcCChhHHHH---HhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHH
Q 045555 27 INRGQVDIARQ---YFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALI 103 (175)
Q Consensus 27 ~~~~~~~~a~~---~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li 103 (175)
...|++++|.+ .+..-......++..+...+...|++++|...+++........+. .......+..+.
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~ 73 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD---------HTAEHRALHQVG 73 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---------HHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC---------cHHHHHHHHHHH
Confidence 46899999999 665544446678899999999999999999999998773211100 011244567899
Q ss_pred HHHHhcCCHHHHHHHHHhhcC-----C-C----hhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 104 DMYCKCGDVEKAQRVFWKMLR-----K-D----KFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 104 ~~~~~~~~~~~a~~~~~~~~~-----~-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
..|...|++++|.+.+++... + + ...+..+...+...|++++|.+.+++..+
T Consensus 74 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 74 MVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999999998733 2 2 34577888899999999999999998874
No 150
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.35 E-value=1.8e-05 Score=56.15 Aligned_cols=130 Identities=8% Similarity=0.088 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhhcCCC---CC------hhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHH
Q 045555 17 ISWTTIVSGYINRGQVDIARQYFAQMPE---RD------YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVR 87 (175)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 87 (175)
..+...+..+...|++++|.+.+....+ .. ...+..+...+...|++++|+..+++...........
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---- 151 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV---- 151 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch----
Confidence 3455677888999999999999975432 11 1234456666788899999999999988643221100
Q ss_pred hhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhc-----CCC-----hhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML-----RKD-----KFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 88 l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-----~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
.....+++.+...|...|++++|...|++.. .++ ..+|+.+...|...|++++|.+.+++..+
T Consensus 152 -----~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~ 224 (293)
T 2qfc_A 152 -----YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp -----THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 0013466889999999999999999999874 122 25888999999999999999999998765
No 151
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.35 E-value=2.1e-06 Score=62.96 Aligned_cols=130 Identities=13% Similarity=0.037 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHhhcCCC-----CC----hhHHHHHHHHHhccCC--------------------hHHH
Q 045555 16 VISWTTIVSGYINRGQVDIARQYFAQMPE-----RD----YVLWTAMIDGYLRVNR--------------------FREA 66 (175)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~~~--------------------~~~a 66 (175)
..++..+...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 55788888889999999999998887653 12 3468888888888899 8888
Q ss_pred HHHHHHhHhCCC-CCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-----CC----hhhHHHHHHH
Q 045555 67 LTLFREMQTSNI-RRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR-----KD----KFTWTAMIVG 136 (175)
Q Consensus 67 ~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~ 136 (175)
...+++..+... .++. .....++..+...|...|++++|...+++..+ ++ ..+|..+...
T Consensus 167 ~~~~~~al~~~~~~~~~----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 236 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDR----------AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA 236 (406)
T ss_dssp HHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCc----------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 888887765310 0111 11234567888999999999999999988743 12 2378888888
Q ss_pred HHhcCChhHHHHHHHHHHH
Q 045555 137 LAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 137 ~~~~g~~~~a~~~~~~m~~ 155 (175)
|...|++++|.+.+++..+
T Consensus 237 ~~~~g~~~~A~~~~~~al~ 255 (406)
T 3sf4_A 237 YIFLGEFETASEYYKKTLL 255 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHH
Confidence 9999999999999988764
No 152
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.33 E-value=6.6e-06 Score=60.48 Aligned_cols=130 Identities=15% Similarity=0.075 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHhhcCCC-------C-ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHH
Q 045555 16 VISWTTIVSGYINRGQVDIARQYFAQMPE-------R-DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVR 87 (175)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~-------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 87 (175)
..+++.+...|.+.|++++|...|++..+ | ...++..+...+.+.|++++|...+++..+.....+..
T Consensus 222 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---- 297 (378)
T 3q15_A 222 AISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHK---- 297 (378)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCS----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH----
Confidence 45788888999999999999999987654 2 34567888888999999999999999988753221111
Q ss_pred hhhccCcchhHHHHHHHHHHhcCC---HHHHHHHHHhhcCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 88 ILTTFNNDIFVGIALIDMYCKCGD---VEKAQRVFWKMLRK--DKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 88 l~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
.....+..+...|...++ +++|...++..... ....+..+...|...|++++|.+.|++..+
T Consensus 298 ------~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 298 ------FYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp ------CHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 112234667778888888 88898888875332 234667788999999999999999998865
No 153
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.33 E-value=2.1e-05 Score=62.57 Aligned_cols=169 Identities=7% Similarity=0.061 Sum_probs=117.1
Q ss_pred chHH-HHhhccCC--C-cHHHHHHHHHHHHhcCChhHHHHHhhcCCC-------------CC------------hhHHHH
Q 045555 2 GFAL-EIFGNMKN--K-DVISWTTIVSGYINRGQVDIARQYFAQMPE-------------RD------------YVLWTA 52 (175)
Q Consensus 2 ~~A~-~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-------------~~------------~~~~~~ 52 (175)
++|. ++|+.... | +...|-..+...-+.|+++.|.++|+.+.+ |+ ..+|..
T Consensus 360 ~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~ 439 (679)
T 4e6h_A 360 STVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCV 439 (679)
T ss_dssp TTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHH
Confidence 4564 77776654 4 555677778888888999999999887653 21 235777
Q ss_pred HHHHHhccCChHHHHHHHHHhHhC-C-CCCChHHHHHhhh-------------------ccCcchhHHHHHHHHHHhcCC
Q 045555 53 MIDGYLRVNRFREALTLFREMQTS-N-IRRDEFTTVRILT-------------------TFNNDIFVGIALIDMYCKCGD 111 (175)
Q Consensus 53 li~~~~~~~~~~~a~~~~~~m~~~-~-~~p~~~~~~~l~~-------------------~~~~~~~~~~~li~~~~~~~~ 111 (175)
.+....+.|..+.|..+|.+.++. + ..+......+.+. .++.+...+...++.....|+
T Consensus 440 y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~ 519 (679)
T 4e6h_A 440 YMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNE 519 (679)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCC
Confidence 777777888899999999998876 2 2222222222222 334455667777777778889
Q ss_pred HHHHHHHHHhhcCC------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhhh
Q 045555 112 VEKAQRVFWKMLRK------DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSAC 172 (175)
Q Consensus 112 ~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 172 (175)
.+.|..+|+..... ....|...+..-.+.|+.+.+.++.+++.+. .|+......+.+-|
T Consensus 520 ~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 520 ESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 99999999987553 2357888888888889999999999988875 45544555555444
No 154
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.33 E-value=4e-05 Score=47.05 Aligned_cols=95 Identities=12% Similarity=0.016 Sum_probs=75.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--CC-
Q 045555 50 WTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--KD- 126 (175)
Q Consensus 50 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~- 126 (175)
+..+...+.+.|++++|...|++..+...... .....+..+..++.+.|++++|...|+.... |+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGV------------YTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH 72 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSST------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCc------------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence 34566778899999999999999988542111 0013445788999999999999999999854 43
Q ss_pred ---hhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 127 ---KFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 127 ---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
...+..+..++...|++++|.+.|+++.+.
T Consensus 73 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 73 DKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 566888889999999999999999999875
No 155
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.31 E-value=1.8e-06 Score=65.89 Aligned_cols=118 Identities=14% Similarity=0.068 Sum_probs=91.2
Q ss_pred HHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcc
Q 045555 19 WTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNND 95 (175)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 95 (175)
+..+...+.+.|++++|.+.|++..+ .+...|..+..++.+.|++++|++.+++..+.. | .+
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p-------------~~ 73 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--K-------------KY 73 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--T-------------TC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--C-------------CC
Confidence 33444567789999999999998763 467889999999999999999999999999863 2 23
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHH--HHhcCChhHHHHHHH
Q 045555 96 IFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVG--LAISGHGDTALDMFS 151 (175)
Q Consensus 96 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~--~~~~g~~~~a~~~~~ 151 (175)
...+..+..+|.+.|++++|.+.|++..+ | +...+..+..+ +.+.|++++|.+.++
T Consensus 74 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 74 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 45567899999999999999999999843 3 45566666666 888899999999988
No 156
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.30 E-value=3.2e-05 Score=49.81 Aligned_cols=117 Identities=14% Similarity=0.102 Sum_probs=84.0
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHhHhCC------CCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 045555 48 VLWTAMIDGYLRVNRFREALTLFREMQTSN------IRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWK 121 (175)
Q Consensus 48 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 121 (175)
..+......+.+.|++++|+..|.+.+..- -.|+...+.. .-+.+...|..+..+|.+.|++++|...++.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVE---LDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHH---HHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHH---HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 356677777888888888888888877640 0111111100 0122345678899999999999999999999
Q ss_pred hcC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHH-HHHHHH
Q 045555 122 MLR--K-DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEV-TYVGVL 169 (175)
Q Consensus 122 ~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll 169 (175)
..+ | +...|..+..+|...|++++|.+.|++.++. .|+.. .....+
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~l 138 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAASVVAREM 138 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGHHHHHHHH
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCHHHHHHHH
Confidence 843 4 6778999999999999999999999998875 56544 444333
No 157
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.28 E-value=2.9e-05 Score=55.02 Aligned_cols=91 Identities=12% Similarity=-0.061 Sum_probs=43.4
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-
Q 045555 49 LWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K- 125 (175)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~- 125 (175)
.+..+...+.+.|++++|+..|++..+.. | .+...+..+..+|.+.|++++|.+.++...+ |
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p-------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 70 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN--P-------------LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ 70 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--S-------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-------------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 34444444555555555555555554431 1 1223334455555555555555555555433 1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 045555 126 DKFTWTAMIVGLAISGHGDTALDMFSQML 154 (175)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (175)
+...|..+..+|...|++++|.+.|++..
T Consensus 71 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 71 SVKAHFFLGQCQLEMESYDEAIANLQRAY 99 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444445555555555555555555443
No 158
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.27 E-value=4.8e-06 Score=50.87 Aligned_cols=102 Identities=11% Similarity=0.094 Sum_probs=74.1
Q ss_pred ccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHH
Q 045555 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIV 135 (175)
Q Consensus 59 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~ 135 (175)
..|++++|+..|++..+.+.. + +.+...+..+..+|.+.|++++|.+.|++..+ | +...+..+..
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~-~-----------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 69 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQ-G-----------KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAM 69 (117)
T ss_dssp -----CCCHHHHHHHHSSCCC-H-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCC-C-----------ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 468899999999999886421 1 11345567899999999999999999999854 4 6778899999
Q ss_pred HHHhcCChhHHHHHHHHHHHC-CCCCcHHHHHHHHhhh
Q 045555 136 GLAISGHGDTALDMFSQMLRA-SIRLDEVTYVGVLSAC 172 (175)
Q Consensus 136 ~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~ 172 (175)
++...|++++|.+.+++..+. .-.|+...|...+..+
T Consensus 70 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 70 VLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 999999999999999998875 2334444444444444
No 159
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.27 E-value=5.3e-06 Score=51.22 Aligned_cols=93 Identities=12% Similarity=-0.008 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCc
Q 045555 18 SWTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN 94 (175)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 94 (175)
.+..+...+.+.|++++|...|++..+ | +...|..+..++.+.|++++|+..|++..+.. |+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~------------- 83 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PK------------- 83 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-------------
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-------------
Confidence 455677888999999999999998764 4 77789999999999999999999999998854 22
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhhcCC
Q 045555 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRK 125 (175)
Q Consensus 95 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 125 (175)
+...+..+..+|.+.|++++|...|+...+.
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 84 DIAVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3445578999999999999999999988653
No 160
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.26 E-value=4e-06 Score=64.18 Aligned_cols=124 Identities=12% Similarity=-0.008 Sum_probs=94.3
Q ss_pred HHHhcCChhHHHHHhhcCCC-------C----ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccC
Q 045555 25 GYINRGQVDIARQYFAQMPE-------R----DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFN 93 (175)
Q Consensus 25 ~~~~~~~~~~a~~~~~~m~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 93 (175)
.+...|++++|..++++..+ + ...+++.|...|...|++++|..++++.+..- ...+..-.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~--------~~~lG~~H 389 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGY--------MKLYHHNN 389 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------HHHSCTTC
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--------HHHcCCCC
Confidence 35578999999999886542 2 34579999999999999999999999986631 11111113
Q ss_pred cc-hhHHHHHHHHHHhcCCHHHHHHHHHhhcC-------CC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 94 ND-IFVGIALIDMYCKCGDVEKAQRVFWKMLR-------KD----KFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 94 ~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
|+ ..+++.|...|...|++++|+.++++..+ |+ ..+.+.+-.++...|++++|..+|+++.++
T Consensus 390 p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 390 AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 35678999999999999999999998732 32 235566778888899999999999999863
No 161
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.26 E-value=4e-06 Score=61.09 Aligned_cols=127 Identities=11% Similarity=0.074 Sum_probs=78.9
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC--CChh------------------HHHHHHHHHhccCChHHHHHHHHHhH
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE--RDYV------------------LWTAMIDGYLRVNRFREALTLFREMQ 74 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~------------------~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (175)
....+..+...+.+.|++++|...|++... |+.. .|..+..+|.+.|++++|+..+++.+
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455678888899999999999999998653 4322 78889999999999999999999998
Q ss_pred hCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHH-HHhcCChhHHHHHH
Q 045555 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVG-LAISGHGDTALDMF 150 (175)
Q Consensus 75 ~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~-~~~~g~~~~a~~~~ 150 (175)
+.. | .+...+..+..+|...|++++|...|+...+ | +...+..+... ....+..+++.+.|
T Consensus 258 ~~~--p-------------~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~ 322 (338)
T 2if4_A 258 TEE--E-------------KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMY 322 (338)
T ss_dssp HHC--T-------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred HhC--C-------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 853 2 2345567899999999999999999999855 3 44455555555 33456778888999
Q ss_pred HHHHHC
Q 045555 151 SQMLRA 156 (175)
Q Consensus 151 ~~m~~~ 156 (175)
+.|...
T Consensus 323 ~~~l~~ 328 (338)
T 2if4_A 323 KGIFKG 328 (338)
T ss_dssp ------
T ss_pred HHhhCC
Confidence 988754
No 162
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.24 E-value=1.5e-05 Score=58.84 Aligned_cols=118 Identities=8% Similarity=-0.025 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHhhcCCC-------------------CChhHHHHHHHHHhccCChHHHHHHHHHhHhC
Q 045555 16 VISWTTIVSGYINRGQVDIARQYFAQMPE-------------------RDYVLWTAMIDGYLRVNRFREALTLFREMQTS 76 (175)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~-------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (175)
...+..+...+.+.|++++|...|++..+ .+...|..+..+|.+.|++++|+..+++.++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 34577888888899999999999987654 14456888888888889999999988888874
Q ss_pred CCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHH
Q 045555 77 NIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALD 148 (175)
Q Consensus 77 ~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~ 148 (175)
. |+ +...+..+..+|.+.|++++|.+.|++..+ | +...+..+...+...++.+++.+
T Consensus 303 ~--p~-------------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 D--PS-------------NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp C--TT-------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C--ch-------------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 22 344456788888888999999888888743 3 55566666677766666666543
No 163
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.21 E-value=7.8e-05 Score=52.90 Aligned_cols=111 Identities=12% Similarity=-0.099 Sum_probs=86.5
Q ss_pred chHHHHhhccCC--CcHHHHHHHHHHHHhcCChhHHHHHhhcCCCC-C----hhHHHHHHHHHhccCChHHHHHHHHHhH
Q 045555 2 GFALEIFGNMKN--KDVISWTTIVSGYINRGQVDIARQYFAQMPER-D----YVLWTAMIDGYLRVNRFREALTLFREMQ 74 (175)
Q Consensus 2 ~~A~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (175)
++|.++|+.+.. |+......+...+.+.+++++|+..|+...+. + ...+..+-.++.+.|++++|++.|++..
T Consensus 119 ~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~ 198 (282)
T 4f3v_A 119 ADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEAN 198 (282)
T ss_dssp HHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 678999998875 64446677777899999999999999976642 2 3467888999999999999999999998
Q ss_pred hCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 75 TSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 75 ~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
.....|... .........++.+.|+.++|..+|+++..
T Consensus 199 ~g~~~P~~~------------~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 199 DSPAGEACA------------RAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp TSTTTTTTH------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCCCcccc------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 543324311 11223688899999999999999999843
No 164
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.20 E-value=8.4e-05 Score=55.84 Aligned_cols=140 Identities=11% Similarity=0.102 Sum_probs=96.1
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC-------C----ChhHHHHHHHHHhcc--CChHHHHHHHHHhHhCCCCCC
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE-------R----DYVLWTAMIDGYLRV--NRFREALTLFREMQTSNIRRD 81 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-------~----~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~p~ 81 (175)
...+|+.+...|...|++++|...+++..+ + ...+++.+..++.+. +++++|+..|++..+.. |+
T Consensus 93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~ 170 (472)
T 4g1t_A 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PK 170 (472)
T ss_dssp THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TT
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CC
Confidence 467899999999999999999998886542 1 334566666566554 57999999999998853 44
Q ss_pred hHHHH-Hh--h----h----------------ccCc-chhHHHHHHHHHH----hcCCHHHHHHHHHhhcC---CChhhH
Q 045555 82 EFTTV-RI--L----T----------------TFNN-DIFVGIALIDMYC----KCGDVEKAQRVFWKMLR---KDKFTW 130 (175)
Q Consensus 82 ~~~~~-~l--~----~----------------~~~~-~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~---~~~~~~ 130 (175)
..... .+ + . ...| +...+..+...+. ..+++++|.+.+++... .+..++
T Consensus 171 ~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~ 250 (472)
T 4g1t_A 171 NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVL 250 (472)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHH
T ss_pred CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHH
Confidence 32211 11 0 0 1223 3445555544444 45678889999988733 367788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 131 TAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 131 ~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
..+...|...|++++|.+.+++..+.
T Consensus 251 ~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 251 RSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 99999999999999999999998874
No 165
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.20 E-value=5.2e-05 Score=55.34 Aligned_cols=131 Identities=9% Similarity=0.002 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHhhcCCC--C------ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCCh-HHHH
Q 045555 16 VISWTTIVSGYINRGQVDIARQYFAQMPE--R------DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDE-FTTV 86 (175)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~ 86 (175)
...+..+...+...|++++|...+++..+ + ...++..+...+...|++++|...+++.......++. ..+.
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 214 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 214 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH
Confidence 34567788889999999999999987542 1 2346778888899999999999999998764222211 1110
Q ss_pred HhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCC-------hhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 87 RILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKD-------KFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 87 ~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
.......+..+...|++++|.+.+.....++ ...+..+...+...|++++|.+.+++...
T Consensus 215 ---------~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 215 ---------SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp ---------HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0001134455789999999999999986542 12456777889999999999999988764
No 166
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.14 E-value=2.6e-05 Score=47.89 Aligned_cols=94 Identities=17% Similarity=0.116 Sum_probs=73.8
Q ss_pred HHHHHHHHHhcCChhHHHHHhhcCCC--CC-h---hHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhcc
Q 045555 19 WTTIVSGYINRGQVDIARQYFAQMPE--RD-Y---VLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTF 92 (175)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~--~~-~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 92 (175)
+..+...+.+.|++++|...|+...+ |+ . ..+..+..++.+.|++++|+..|++..+.......
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~---------- 74 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK---------- 74 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT----------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc----------
Confidence 34566778899999999999998763 43 3 47888889999999999999999999886421100
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 93 NNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 93 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
....+..+..+|.+.|++++|...|+....
T Consensus 75 --~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 75 --AAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 023445788999999999999999999854
No 167
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.10 E-value=3.8e-05 Score=54.37 Aligned_cols=94 Identities=11% Similarity=0.017 Sum_probs=77.9
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhc
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT 91 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (175)
+...+..+...+.+.|++++|...|++..+ | +...|..+..++.+.|++++|+..+++..+.. |+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~---------- 70 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQ---------- 70 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TT----------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CC----------
Confidence 456788888899999999999999998653 4 67788999999999999999999999998753 22
Q ss_pred cCcchhHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 045555 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123 (175)
Q Consensus 92 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 123 (175)
+...+..+..+|.+.|++++|...|....
T Consensus 71 ---~~~~~~~lg~~~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 71 ---SVKAHFFLGQCQLEMESYDEAIANLQRAY 99 (281)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455788999999999999999998873
No 168
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.10 E-value=0.00011 Score=53.35 Aligned_cols=127 Identities=11% Similarity=0.052 Sum_probs=91.3
Q ss_pred CChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHH
Q 045555 30 GQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMY 106 (175)
Q Consensus 30 ~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~ 106 (175)
+++++|...|+...+ | +...+..+...+.+.|++++|+..|++..+................-......|..+..+|
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554432 2 4567889999999999999999999999885421110000000000000135678899999
Q ss_pred HhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 107 CKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
.+.|++++|...|+...+ | +...|..+..+|...|++++|.+.|++.++.
T Consensus 207 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999854 3 6788999999999999999999999999874
No 169
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.08 E-value=0.00013 Score=47.33 Aligned_cols=113 Identities=16% Similarity=0.133 Sum_probs=82.0
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHhCCCC-CChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhc----
Q 045555 49 LWTAMIDGYLRVNRFREALTLFREMQTSNIR-RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML---- 123 (175)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~---- 123 (175)
.+......+.+.|++++|+..|++.++.... |+.. .+...+.+...|+.+..++.+.|++++|...++...
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~----a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE----AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS----CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh----hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 4566677788899999999999999885432 1100 000001123478899999999999999999999984
Q ss_pred -----CC-ChhhH----HHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCcHHHH
Q 045555 124 -----RK-DKFTW----TAMIVGLAISGHGDTALDMFSQMLR-----ASIRLDEVTY 165 (175)
Q Consensus 124 -----~~-~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t~ 165 (175)
.| +...| .....++...|++++|...|++.++ .|+.+.....
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 55 34577 8889999999999999999999864 3555554433
No 170
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.08 E-value=0.00011 Score=55.21 Aligned_cols=139 Identities=12% Similarity=0.020 Sum_probs=78.8
Q ss_pred cHHHHHHHHHHHHh----cCChhHHHHHhhcCC---CCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCCh-HHHH
Q 045555 15 DVISWTTIVSGYIN----RGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDE-FTTV 86 (175)
Q Consensus 15 ~~~~~~~li~~~~~----~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~ 86 (175)
+..++..+...+.+ .|++++|...+++.. ..+..++..+...|.+.|++++|+..+++..+.. |+. ..+.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChHHHHH
Confidence 44455544444433 456677777777654 2466678888888999999999999999988753 332 1221
Q ss_pred Hhhh---------------------------------------ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C
Q 045555 87 RILT---------------------------------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K 125 (175)
Q Consensus 87 ~l~~---------------------------------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~ 125 (175)
.+-. .-+.+...+..+...|.+.|++++|...|++... +
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 1100 1122234455666777777777777777776632 2
Q ss_pred Chh----hHHHHHH-HHHhcCChhHHHHHHHHHHH
Q 045555 126 DKF----TWTAMIV-GLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 126 ~~~----~~~~li~-~~~~~g~~~~a~~~~~~m~~ 155 (175)
+.. .+..+.. .+...|+.++|.+.|++.++
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 221 1222222 23356677777777777665
No 171
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.07 E-value=4.6e-05 Score=49.05 Aligned_cols=95 Identities=14% Similarity=0.101 Sum_probs=79.2
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCCC---------------------ChhHHHHHHHHHhccCChHHHHHHHHHh
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPER---------------------DYVLWTAMIDGYLRVNRFREALTLFREM 73 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m 73 (175)
....+......+.+.|++++|...|.+..+- +...|..+..+|.+.|++++|+..+++.
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3557888899999999999999999975431 2357889999999999999999999999
Q ss_pred HhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 74 QTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 74 ~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
++.. | .+...|..+..+|...|++++|...|+....
T Consensus 90 l~~~--p-------------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 90 LKRE--E-------------TNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHS--T-------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcC--C-------------cchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 9854 2 2345567899999999999999999999854
No 172
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.04 E-value=0.00023 Score=60.54 Aligned_cols=127 Identities=9% Similarity=0.045 Sum_probs=64.9
Q ss_pred chHHHHhhccCC--CcHHHHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCC
Q 045555 2 GFALEIFGNMKN--KDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 79 (175)
Q Consensus 2 ~~A~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 79 (175)
++|.+.+....+ ++....+.++.+|++.+++++...+. ..++...|..+...|...|++++|...|....
T Consensus 1151 EEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~----- 1222 (1630)
T 1xi4_A 1151 EELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----- 1222 (1630)
T ss_pred HHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh-----
Confidence 345555543322 23333334666666666655433332 33444444555555555566666655555531
Q ss_pred CChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC----------------------------ChhhHH
Q 045555 80 RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK----------------------------DKFTWT 131 (175)
Q Consensus 80 p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----------------------------~~~~~~ 131 (175)
. |..+..+|.+.|++++|.+.+++...+ +...+.
T Consensus 1223 ----n--------------y~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLe 1284 (1630)
T 1xi4_A 1223 ----N--------------FGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELE 1284 (1630)
T ss_pred ----H--------------HHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHH
Confidence 1 234444555555555555444443222 233455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 045555 132 AMIVGLAISGHGDTALDMFSQML 154 (175)
Q Consensus 132 ~li~~~~~~g~~~~a~~~~~~m~ 154 (175)
.++..|-+.|.+++|.++++..+
T Consensus 1285 eli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1285 ELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHh
Confidence 66667777777777777776554
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.04 E-value=1.9e-05 Score=60.27 Aligned_cols=104 Identities=13% Similarity=0.070 Sum_probs=79.3
Q ss_pred chHHHHhhccCC--C-cHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 2 GFALEIFGNMKN--K-DVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 2 ~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
++|++.|++..+ | +..+|..+..+|.+.|++++|...|++..+ .+...|..+..+|.+.|++++|.+.|++..+
T Consensus 23 ~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 102 (477)
T 1wao_1 23 ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVK 102 (477)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567888887664 4 688999999999999999999999998653 4677899999999999999999999999988
Q ss_pred CCCCCChHHHHHhhhccCcchhHHHHHHHH--HHhcCCHHHHHHHHH
Q 045555 76 SNIRRDEFTTVRILTTFNNDIFVGIALIDM--YCKCGDVEKAQRVFW 120 (175)
Q Consensus 76 ~~~~p~~~~~~~l~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~ 120 (175)
.. |+ +...+..+..+ +.+.|++++|.+.++
T Consensus 103 ~~--p~-------------~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 103 VK--PH-------------DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HS--TT-------------CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred hC--CC-------------CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 54 22 12222334444 888899999999999
No 174
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.01 E-value=3.8e-05 Score=49.79 Aligned_cols=96 Identities=14% Similarity=0.042 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHhhcCCC--CC--------hh-----HHHHHHHHHhccCChHHHHHHHHHhHhC----
Q 045555 16 VISWTTIVSGYINRGQVDIARQYFAQMPE--RD--------YV-----LWTAMIDGYLRVNRFREALTLFREMQTS---- 76 (175)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~--------~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~---- 76 (175)
...+......+.+.|++++|...|++..+ |+ .. .|+.+..++.+.|++++|+..+++.++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 34566777888899999999999998764 33 22 8999999999999999999999999884
Q ss_pred -CCCCChHHHHHhhhccCcchhHH----HHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 77 -NIRRDEFTTVRILTTFNNDIFVG----IALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 77 -~~~p~~~~~~~l~~~~~~~~~~~----~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
.+.|+ +...| .....++...|++++|...|++..+
T Consensus 91 ~e~~pd-------------~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELNQD-------------EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTTST-------------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCc-------------hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 11333 34556 7899999999999999999999843
No 175
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.98 E-value=1.9e-05 Score=48.16 Aligned_cols=82 Identities=10% Similarity=0.117 Sum_probs=60.1
Q ss_pred hcCChhHHHHHhhcCCCC------ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHH
Q 045555 28 NRGQVDIARQYFAQMPER------DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIA 101 (175)
Q Consensus 28 ~~~~~~~a~~~~~~m~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~ 101 (175)
..|++++|...|++..+. +...+..+...+.+.|++++|+..|++..+.. |+ +...+..
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~-------------~~~~~~~ 66 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PN-------------HQALRVF 66 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-------------CHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-------------chHHHHH
Confidence 457888888888876542 34568888888999999999999999988854 22 3445567
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcC
Q 045555 102 LIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 102 li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
+..++.+.|++++|...|++...
T Consensus 67 l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 67 YAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 88899999999999999988743
No 176
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.96 E-value=0.00082 Score=50.79 Aligned_cols=139 Identities=11% Similarity=0.055 Sum_probs=91.1
Q ss_pred chHHHHhhccCC---CcHHHHHHHHHHHHhc----CChhHHHHHhhcCCCCChhHHHHHHHH-H--hccCChHHHHHHHH
Q 045555 2 GFALEIFGNMKN---KDVISWTTIVSGYINR----GQVDIARQYFAQMPERDYVLWTAMIDG-Y--LRVNRFREALTLFR 71 (175)
Q Consensus 2 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~ 71 (175)
++|+++|+...+ ++...+..+...|.+- +++++|...|++....+...+..|-.. + ...+++++|+..|+
T Consensus 196 ~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~ 275 (452)
T 3e4b_A 196 AELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLD 275 (452)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 356666665543 3455556677777554 688899999998773356667777666 4 56788999999999
Q ss_pred HhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcC-----CHHHHHHHHHhhcCCChhhHHHHHHHHHh----cCC
Q 045555 72 EMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCG-----DVEKAQRVFWKMLRKDKFTWTAMIVGLAI----SGH 142 (175)
Q Consensus 72 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~li~~~~~----~g~ 142 (175)
+..+.|. ...+..|...|. .| ++++|.+.|+.....+...+..+...|.. ..+
T Consensus 276 ~Aa~~g~-----------------~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y~~G~g~~~d 337 (452)
T 3e4b_A 276 NGRAADQ-----------------PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAADYYLGQIYRRGYLGKVY 337 (452)
T ss_dssp HHHHTTC-----------------HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHHHHTTTTSSCC
T ss_pred HHHHCCC-----------------HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHCCCCCCcC
Confidence 9887761 222234555555 44 77888888877772245555556555554 237
Q ss_pred hhHHHHHHHHHHHCCC
Q 045555 143 GDTALDMFSQMLRASI 158 (175)
Q Consensus 143 ~~~a~~~~~~m~~~g~ 158 (175)
+++|.+.|++..+.|.
T Consensus 338 ~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 338 PQKALDHLLTAARNGQ 353 (452)
T ss_dssp HHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhhCh
Confidence 7777777777766554
No 177
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.96 E-value=0.0002 Score=52.86 Aligned_cols=109 Identities=9% Similarity=-0.027 Sum_probs=81.3
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHhHhCCCC-CChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--
Q 045555 48 VLWTAMIDGYLRVNRFREALTLFREMQTSNIR-RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR-- 124 (175)
Q Consensus 48 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-- 124 (175)
..+..+...+.+.|++++|+..|++.++.-.. |...........-+.+..+|..+..+|.+.|++++|.+.++...+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 34778888999999999999999999872100 000000000000122356778899999999999999999999865
Q ss_pred C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 125 K-DKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 125 ~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
| +...|..+..+|...|++++|.+.|++..+.
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3 5678889999999999999999999999874
No 178
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.95 E-value=1.1e-05 Score=48.15 Aligned_cols=90 Identities=11% Similarity=0.062 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--
Q 045555 47 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR-- 124 (175)
Q Consensus 47 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-- 124 (175)
...+..+...+.+.|++++|+..|++..+.. | .+...+..+..+|.+.|++++|.+.|+...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p-------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--P-------------QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--T-------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C-------------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3456667777777888888888888777643 2 2334456677778888888888888887744
Q ss_pred CC-------hhhHHHHHHHHHhcCChhHHHHHHH
Q 045555 125 KD-------KFTWTAMIVGLAISGHGDTALDMFS 151 (175)
Q Consensus 125 ~~-------~~~~~~li~~~~~~g~~~~a~~~~~ 151 (175)
|+ ...+..+..++...|+.+.|.+.++
T Consensus 69 p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 69 STAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp SSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 32 3344455555555555555544443
No 179
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.93 E-value=0.00072 Score=51.09 Aligned_cols=128 Identities=11% Similarity=0.060 Sum_probs=76.3
Q ss_pred cHHHHHHHHHHHHhcCC----hhHHHHHhhcCCCCChhHHHHHHHHHhccC---ChHHHHHHHHHhHhCCCCCChHHHHH
Q 045555 15 DVISWTTIVSGYINRGQ----VDIARQYFAQMPERDYVLWTAMIDGYLRVN---RFREALTLFREMQTSNIRRDEFTTVR 87 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~----~~~a~~~~~~m~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~ 87 (175)
++.....+...|...+. .+.+..+++.....+...+..|...|.+.| +.++|+..|++..+.|.....
T Consensus 140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~----- 214 (452)
T 3e4b_A 140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQ----- 214 (452)
T ss_dssp CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHH-----
T ss_pred CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHH-----
Confidence 34455566666666553 344555565555556668888888888888 899999999999887732221
Q ss_pred hhhccCcchhHHHHHHHHHHhc----CCHHHHHHHHHhhcCCChhhHHHHHHH-H--HhcCChhHHHHHHHHHHHCC
Q 045555 88 ILTTFNNDIFVGIALIDMYCKC----GDVEKAQRVFWKMLRKDKFTWTAMIVG-L--AISGHGDTALDMFSQMLRAS 157 (175)
Q Consensus 88 l~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~g 157 (175)
.+..+...|... +++++|.+.|+.....+...+..+... + ...|++++|.+.|++..+.|
T Consensus 215 ----------~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g 281 (452)
T 3e4b_A 215 ----------RVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD 281 (452)
T ss_dssp ----------HHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT
T ss_pred ----------HHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC
Confidence 112344444333 566666666666551144444444444 2 34556666666666655554
No 180
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.92 E-value=7.6e-06 Score=48.94 Aligned_cols=99 Identities=8% Similarity=0.026 Sum_probs=72.5
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCC-ChHHHHHhh
Q 045555 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRR-DEFTTVRIL 89 (175)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~ 89 (175)
++...+..+...+.+.|++++|...|++..+ .+...|..+..++.+.|++++|+..+++..+..... +...+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~---- 77 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIR---- 77 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHH----
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHH----
Confidence 3567788899999999999999999998763 477789999999999999999999999999854221 11111
Q ss_pred hccCcchhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 045555 90 TTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM 122 (175)
Q Consensus 90 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 122 (175)
...+..+..++...|+.+.|.+.++++
T Consensus 78 ------~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 78 ------SKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp ------HHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred ------HHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 223345666666666666665555443
No 181
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.87 E-value=6.3e-05 Score=54.91 Aligned_cols=130 Identities=8% Similarity=-0.033 Sum_probs=97.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhcCCC-----CCh----hHHHHHHHHHhccCChHHHHHHHHHhHhCCCC-CChHHHHH
Q 045555 18 SWTTIVSGYINRGQVDIARQYFAQMPE-----RDY----VLWTAMIDGYLRVNRFREALTLFREMQTSNIR-RDEFTTVR 87 (175)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ 87 (175)
+++.+...+...|++++|...+++..+ ++. .++..+...+...|++++|...+++..+.... .+.
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~----- 129 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE----- 129 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT-----
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc-----
Confidence 567777888999999999999998653 222 33667788899999999999999998764210 000
Q ss_pred hhhccCc-chhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 88 ILTTFNN-DIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K------DKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 88 l~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
..| ....+..+...+...|++++|...+++... + ...+|..+...+...|++++|...+++....
T Consensus 130 ----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 203 (373)
T 1hz4_A 130 ----QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL 203 (373)
T ss_dssp ----TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 001 123456788899999999999999998732 1 1346778888899999999999999998753
No 182
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.87 E-value=0.00086 Score=48.20 Aligned_cols=140 Identities=6% Similarity=0.053 Sum_probs=106.4
Q ss_pred chHHHHhhccCC---CcHHHHHHHHHHHHhcCChh--HHHHHhhcCCC---CChhHHHHHHHHHhccCC------hHHHH
Q 045555 2 GFALEIFGNMKN---KDVISWTTIVSGYINRGQVD--IARQYFAQMPE---RDYVLWTAMIDGYLRVNR------FREAL 67 (175)
Q Consensus 2 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~---~~~~~~~~li~~~~~~~~------~~~a~ 67 (175)
++++++++.+.+ .|..+|+--.-.+.+.|.++ ++++.++.+.+ .|...|+.....+.+.+. +++++
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 356666666654 57788888888888888888 88888888875 477778877777777666 88888
Q ss_pred HHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCH-HHHHHHHHhhcC------CChhhHHHHHHHHHhc
Q 045555 68 TLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDV-EKAQRVFWKMLR------KDKFTWTAMIVGLAIS 140 (175)
Q Consensus 68 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~------~~~~~~~~li~~~~~~ 140 (175)
+.++++.... +-|...|+.+-..+.+.|+. +.+..+..+..+ ++...+..+...|.+.
T Consensus 207 ~~~~~aI~~~---------------p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~ 271 (306)
T 3dra_A 207 NYVKDKIVKC---------------PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQ 271 (306)
T ss_dssp HHHHHHHHHC---------------SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhC---------------CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcc
Confidence 8888888754 33556677788888888884 445566666533 3677889999999999
Q ss_pred CChhHHHHHHHHHHHC
Q 045555 141 GHGDTALDMFSQMLRA 156 (175)
Q Consensus 141 g~~~~a~~~~~~m~~~ 156 (175)
|+.++|.++++.+.++
T Consensus 272 ~~~~~A~~~~~~l~~~ 287 (306)
T 3dra_A 272 KKYNESRTVYDLLKSK 287 (306)
T ss_dssp TCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999999863
No 183
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.86 E-value=0.00016 Score=53.69 Aligned_cols=125 Identities=10% Similarity=-0.029 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhcCCC-----CCh----hHHHHHHHHHhccCChHHHHHHHHHhHhC----CCCCChHH
Q 045555 18 SWTTIVSGYINRGQVDIARQYFAQMPE-----RDY----VLWTAMIDGYLRVNRFREALTLFREMQTS----NIRRDEFT 84 (175)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~ 84 (175)
++..+...|.+.|++++|.+.+....+ ++. .+.+.+-..+...|+++.+..++.+.... +..+.
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--- 133 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFL--- 133 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSS---
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHH---
Confidence 466777888888888888888877653 111 22333334444557788888877776542 11111
Q ss_pred HHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--------C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 85 TVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--------K-DKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
-..++..+...|...|++++|..+++.... + ...+|..++..|...|++++|...+++...
T Consensus 134 ----------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 134 ----------KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp ----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 234567899999999999999999998732 1 345788899999999999999999988764
No 184
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.83 E-value=0.00015 Score=54.75 Aligned_cols=99 Identities=10% Similarity=-0.006 Sum_probs=74.9
Q ss_pred ccCChHHHHHHHHHhHhC---CCCCChHHHHHhhhccCcc-hhHHHHHHHHHHhcCCHHHHHHHHHhhcC-------C--
Q 045555 59 RVNRFREALTLFREMQTS---NIRRDEFTTVRILTTFNND-IFVGIALIDMYCKCGDVEKAQRVFWKMLR-------K-- 125 (175)
Q Consensus 59 ~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~-- 125 (175)
..|++++|..++++.+.. -+.|+ .|+ ..+++.|..+|...|++++|+.++++..+ +
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~-----------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 378 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDS-----------NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYS 378 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTT-----------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred hccCHHHHHHHHHHHHHHhhCccChh-----------chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 457899999999988763 23343 222 45678999999999999999999999832 2
Q ss_pred --ChhhHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCcHHHHHHH
Q 045555 126 --DKFTWTAMIVGLAISGHGDTALDMFSQMLR---ASIRLDEVTYVGV 168 (175)
Q Consensus 126 --~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~t~~~l 168 (175)
...+|+.+...|...|++++|..++++..+ .-+.||......+
T Consensus 379 p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l 426 (433)
T 3qww_A 379 LNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEI 426 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 345799999999999999999999998764 2345555444443
No 185
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.82 E-value=6.6e-05 Score=45.37 Aligned_cols=76 Identities=14% Similarity=0.069 Sum_probs=65.4
Q ss_pred CchHHHHhhccCC---CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhH
Q 045555 1 MGFALEIFGNMKN---KDVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQ 74 (175)
Q Consensus 1 ~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (175)
+++|++.|+...+ .+...+..+...|.+.|++++|...|++..+ .+...|..+..++.+.|++++|...|++..
T Consensus 1 ~~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CCCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4678888887765 3678899999999999999999999998763 366789999999999999999999999987
Q ss_pred hC
Q 045555 75 TS 76 (175)
Q Consensus 75 ~~ 76 (175)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 74
No 186
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.81 E-value=0.0002 Score=53.91 Aligned_cols=107 Identities=10% Similarity=0.003 Sum_probs=80.1
Q ss_pred HHHHHHhccCChHHHHHHHHHhHhCC---CCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC----
Q 045555 52 AMIDGYLRVNRFREALTLFREMQTSN---IRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR---- 124 (175)
Q Consensus 52 ~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---- 124 (175)
..+..+.+.|++++|..++++.+... +.|+... -..+++.|...|...|++++|+.++++..+
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~----------~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~ 361 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIY----------QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRI 361 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHH----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchH----------HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHH
Confidence 33556778899999999999998642 2333222 245678999999999999999999998732
Q ss_pred ---C----ChhhHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCcHHHHHHH
Q 045555 125 ---K----DKFTWTAMIVGLAISGHGDTALDMFSQMLR---ASIRLDEVTYVGV 168 (175)
Q Consensus 125 ---~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~t~~~l 168 (175)
+ ...+++.+...|...|++++|..++++..+ .-+.||......+
T Consensus 362 ~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 362 FFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 2 345799999999999999999999988764 3345555444444
No 187
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.80 E-value=0.00029 Score=42.42 Aligned_cols=77 Identities=14% Similarity=0.171 Sum_probs=62.5
Q ss_pred HHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcC
Q 045555 65 EALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISG 141 (175)
Q Consensus 65 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g 141 (175)
+|+..|++..+.. +.+...+..+...|.+.|++++|...|+...+ | +...|..+...|...|
T Consensus 3 ~a~~~~~~al~~~---------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 67 (115)
T 2kat_A 3 AITERLEAMLAQG---------------TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQG 67 (115)
T ss_dssp CHHHHHHHHHTTT---------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC---------------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcC
Confidence 4666777776643 22455667899999999999999999999843 3 5778999999999999
Q ss_pred ChhHHHHHHHHHHHC
Q 045555 142 HGDTALDMFSQMLRA 156 (175)
Q Consensus 142 ~~~~a~~~~~~m~~~ 156 (175)
++++|.+.|++..+.
T Consensus 68 ~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 68 DRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998764
No 188
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.79 E-value=0.00015 Score=55.52 Aligned_cols=102 Identities=12% Similarity=0.014 Sum_probs=76.9
Q ss_pred HHHhccCChHHHHHHHHHhHhCC---CCCChHHHHHhhhccCcc-hhHHHHHHHHHHhcCCHHHHHHHHHhhcC------
Q 045555 55 DGYLRVNRFREALTLFREMQTSN---IRRDEFTTVRILTTFNND-IFVGIALIDMYCKCGDVEKAQRVFWKMLR------ 124 (175)
Q Consensus 55 ~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~l~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~------ 124 (175)
..+...|++++|..++++.+... +.|+ .|+ ..+++.|...|...|++++|+.++++..+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~-----------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~l 385 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADT-----------NLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLY 385 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTT-----------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCC-----------CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHc
Confidence 34667899999999999887642 2233 222 45678999999999999999999998732
Q ss_pred -C----ChhhHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCcHHHHHH
Q 045555 125 -K----DKFTWTAMIVGLAISGHGDTALDMFSQMLR---ASIRLDEVTYVG 167 (175)
Q Consensus 125 -~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~t~~~ 167 (175)
+ ...+++.|...|...|++++|..++++.++ .-+.||......
T Consensus 386 G~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 436 (490)
T 3n71_A 386 HHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKD 436 (490)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHH
Confidence 2 345799999999999999999999998764 334555444333
No 189
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.77 E-value=0.00062 Score=51.59 Aligned_cols=123 Identities=11% Similarity=0.012 Sum_probs=88.0
Q ss_pred hhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCCh--HHHHHhhhccCcchhHHHHHHHHH
Q 045555 32 VDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDE--FTTVRILTTFNNDIFVGIALIDMY 106 (175)
Q Consensus 32 ~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~~li~~~ 106 (175)
+++|...|+...+ .....|..+...+.+.|++++|+..|++.++....... .....-+ -......|..+..+|
T Consensus 250 ~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~--~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 250 FEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKAS--ESFLLAAFLNLAMCY 327 (457)
T ss_dssp EECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred cccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHH--HHHHHHHHHHHHHHH
Confidence 3344444443332 13456888899999999999999999999884311100 0000000 000135677899999
Q ss_pred HhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 107 CKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
.+.|++++|...|+...+ | +...|..+..+|...|++++|...|++.++.
T Consensus 328 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999854 3 6788999999999999999999999999864
No 190
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.76 E-value=0.00016 Score=45.62 Aligned_cols=112 Identities=14% Similarity=0.016 Sum_probs=87.2
Q ss_pred cCChhHHHHHhhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHH
Q 045555 29 RGQVDIARQYFAQMPER-DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYC 107 (175)
Q Consensus 29 ~~~~~~a~~~~~~m~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~ 107 (175)
.+++++|...|++..+. +.... |-..|...+..++|++.|++..+.| +...+..|-..|.
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g-----------------~~~a~~~Lg~~y~ 68 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACELN-----------------SGNGCRFLGDFYE 68 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT-----------------CHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC-----------------CHHHHHHHHHHHH
Confidence 45678888888876543 33333 6667777778888999999998875 2334456777887
Q ss_pred h----cCCHHHHHHHHHhhcCC-ChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCC
Q 045555 108 K----CGDVEKAQRVFWKMLRK-DKFTWTAMIVGLAI----SGHGDTALDMFSQMLRASIR 159 (175)
Q Consensus 108 ~----~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~ 159 (175)
. .+++++|.+.|+...+. +...+..+-..|.. .+++++|.+.|++..+.|..
T Consensus 69 ~G~g~~~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 69 NGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred cCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 7 89999999999998654 77788888888888 89999999999999988743
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.70 E-value=0.00028 Score=44.41 Aligned_cols=98 Identities=16% Similarity=0.136 Sum_probs=76.3
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHhHhCCCC-CChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--
Q 045555 48 VLWTAMIDGYLRVNRFREALTLFREMQTSNIR-RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR-- 124 (175)
Q Consensus 48 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-- 124 (175)
.++..+...+...|++++|+..+++..+.... ++... -..++..+...|...|++++|.+.++...+
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 79 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA----------ERIAYSNLGNAYIFLGEFETASEYYKKTLLLA 79 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchH----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 45788888899999999999999998774211 11110 123567899999999999999999999743
Q ss_pred ---CC----hhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 125 ---KD----KFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 125 ---~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
++ ...+..+...+...|++++|.+.+++..+
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 80 RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 12 45678888899999999999999998775
No 192
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.69 E-value=0.00053 Score=40.42 Aligned_cols=62 Identities=18% Similarity=0.173 Sum_probs=38.5
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 045555 46 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM 122 (175)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 122 (175)
+...+..+...+.+.|++++|+..|++..+... .+...|..+..+|.+.|++++|.+.|++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP---------------DYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---------------TCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445566666667777777777777777666431 12334456666777777777776666654
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.69 E-value=0.00042 Score=50.37 Aligned_cols=105 Identities=12% Similarity=0.016 Sum_probs=80.6
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHH------hhhccCcchhHHHHHHHHHHhcCCHHHHHHHHH
Q 045555 47 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVR------ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120 (175)
Q Consensus 47 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~------l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 120 (175)
...+..+...+.+.|++++|+..|++..+.. |+...+.. .... .....|..+..+|.+.|++++|...++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~--l~~~~~~nla~~~~~~g~~~~A~~~~~ 254 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALA--VKNPCHLNIAACLIKLKRYDEAIGHCN 254 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHH--HHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHH--HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3457788888999999999999999988742 33221100 0000 001267789999999999999999999
Q ss_pred hhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 121 KMLR--K-DKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 121 ~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
...+ | +...|..+..+|...|++++|.+.|++.++
T Consensus 255 ~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 255 IVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9843 3 678899999999999999999999999875
No 194
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.67 E-value=0.00044 Score=40.76 Aligned_cols=76 Identities=16% Similarity=0.098 Sum_probs=60.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCcHHHHHHHHh
Q 045555 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMFSQMLRA-SIRLDEVTYVGVLS 170 (175)
Q Consensus 95 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~ 170 (175)
+...+..+...|.+.|++++|.+.|+...+ | +...|..+..+|...|++++|.+.|++..+. .-.++......+..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~ 85 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQD 85 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHH
Confidence 456677899999999999999999999844 4 5778999999999999999999999998764 22345554444433
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.66 E-value=0.0011 Score=37.69 Aligned_cols=56 Identities=23% Similarity=0.355 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 100 IALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 100 ~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
..+...+.+.|++++|...|+...+ | +...|..+...+.+.|++++|.+.|++..+
T Consensus 13 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 13 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3444444445555555555544421 1 334444444555555555555555555444
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.63 E-value=0.00046 Score=39.30 Aligned_cols=63 Identities=17% Similarity=0.452 Sum_probs=55.1
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCC
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 77 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 77 (175)
+...+..+...+.+.|++++|...|++..+ .+...+..+...+.+.|++++|...+++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 456788899999999999999999998653 467788999999999999999999999998853
No 197
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.58 E-value=0.00014 Score=46.97 Aligned_cols=100 Identities=15% Similarity=0.030 Sum_probs=76.7
Q ss_pred hccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCC----------HHHHHHHHHhhcC--C
Q 045555 58 LRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGD----------VEKAQRVFWKMLR--K 125 (175)
Q Consensus 58 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~--~ 125 (175)
.+.+.+++|+..+++..+.. +.+...|+.+..++.+.++ +++|...|++..+ |
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~---------------P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP 77 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN---------------PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP 77 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHhHHHHHHHHHHHHHHHC---------------CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc
Confidence 45567899999999998854 2345556667777777765 4699999999843 4
Q ss_pred -ChhhHHHHHHHHHhcC-----------ChhHHHHHHHHHHHCCCCCcHHHHHHHHhhhcC
Q 045555 126 -DKFTWTAMIVGLAISG-----------HGDTALDMFSQMLRASIRLDEVTYVGVLSACTH 174 (175)
Q Consensus 126 -~~~~~~~li~~~~~~g-----------~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 174 (175)
+...|..+..+|...| ++++|.+.|++.++ +.|+...|..-+..+.+
T Consensus 78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~~k 136 (158)
T 1zu2_A 78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTAK 136 (158)
T ss_dssp TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHh
Confidence 6778999999998764 89999999999987 47888888777665543
No 198
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.48 E-value=0.0021 Score=50.10 Aligned_cols=149 Identities=9% Similarity=0.051 Sum_probs=112.5
Q ss_pred chHHHHhhccCC--C-cHHHHHHHHHHHHhcCC----------hhHHHHHhhcCCC---CChhHHHHHHHHHhccC--Ch
Q 045555 2 GFALEIFGNMKN--K-DVISWTTIVSGYINRGQ----------VDIARQYFAQMPE---RDYVLWTAMIDGYLRVN--RF 63 (175)
Q Consensus 2 ~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~--~~ 63 (175)
++|++.++.+.+ | +..+|+.--..+.+.|+ ++++...++.+.+ .+..+|+.--..+.+.+ ++
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~ 125 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence 467777777765 4 56678877777777776 8999999998874 46778888888888999 77
Q ss_pred HHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcC-CHHHHHHHHHhhcCC---ChhhHHHHHHHHHh
Q 045555 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCG-DVEKAQRVFWKMLRK---DKFTWTAMIVGLAI 139 (175)
Q Consensus 64 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~---~~~~~~~li~~~~~ 139 (175)
+++++.++++.+.. +-+-..|+.-...+.+.| .++++.+.++++.+. +...|+.....+.+
T Consensus 126 ~~el~~~~k~l~~d---------------~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 126 ARELELCARFLEAD---------------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp HHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc---------------cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHh
Confidence 99999999999965 234556677777778888 899999999999764 66778877777665
Q ss_pred c--------------CChhHHHHHHHHHHHCCCCC-cHHHHHH
Q 045555 140 S--------------GHGDTALDMFSQMLRASIRL-DEVTYVG 167 (175)
Q Consensus 140 ~--------------g~~~~a~~~~~~m~~~g~~p-~~~t~~~ 167 (175)
. +.++++.+.+++.... .| |...|..
T Consensus 191 l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y 231 (567)
T 1dce_A 191 LHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFY 231 (567)
T ss_dssp HSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHH
T ss_pred hcccccccccccccHHHHHHHHHHHHHHHhh--CCCCccHHHH
Confidence 3 5578899999888764 34 3444443
No 199
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.00045 Score=51.24 Aligned_cols=129 Identities=12% Similarity=-0.036 Sum_probs=94.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhcCCC--------C-ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHh
Q 045555 18 SWTTIVSGYINRGQVDIARQYFAQMPE--------R-DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRI 88 (175)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~--------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 88 (175)
+.+.+-..+...|+.+.|..++..... + -..++..|...+...|++++|..++.+....-...+..
T Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~----- 171 (434)
T 4b4t_Q 97 LKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK----- 171 (434)
T ss_dssp HHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS-----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc-----
Confidence 344455556677899999999887542 1 23467889999999999999999999987642221110
Q ss_pred hhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-----CC-----hhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 89 LTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR-----KD-----KFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 89 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
.....++..++..|...|++++|...++.... ++ ...+..+...+...|++++|.+.|.+..+
T Consensus 172 ----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 ----PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp ----THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred ----hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11245678899999999999999999988732 11 34667777788889999999988877754
No 200
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.41 E-value=0.001 Score=50.13 Aligned_cols=94 Identities=6% Similarity=-0.039 Sum_probs=70.8
Q ss_pred HHHHHHHhcCChhHHHHHhhcCCC-------C----ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhh
Q 045555 21 TIVSGYINRGQVDIARQYFAQMPE-------R----DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRIL 89 (175)
Q Consensus 21 ~li~~~~~~~~~~~a~~~~~~m~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 89 (175)
..+.-+.+.|++++|..++++..+ + ...+++.|...|...|++++|..++++.+..- ...+
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~--------~~~l 363 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPY--------RIFF 363 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------HHHS
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhH--------HHHc
Confidence 335556688999999999986542 2 24579999999999999999999999987531 1111
Q ss_pred hccCcc-hhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 045555 90 TTFNND-IFVGIALIDMYCKCGDVEKAQRVFWKM 122 (175)
Q Consensus 90 ~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~ 122 (175)
....|+ ..+++.|...|...|++++|+.++++.
T Consensus 364 g~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 364 PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 111333 346789999999999999999999987
No 201
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.33 E-value=0.00068 Score=51.13 Aligned_cols=87 Identities=8% Similarity=0.032 Sum_probs=66.0
Q ss_pred hcCChhHHHHHhhcCCC-------C----ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcc-
Q 045555 28 NRGQVDIARQYFAQMPE-------R----DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNND- 95 (175)
Q Consensus 28 ~~~~~~~a~~~~~~m~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~- 95 (175)
+.|++++|..++++..+ + ...+++.|...|...|++++|..++++.+.. +...+..-.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i--------~~~~lG~~Hp~~ 381 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP--------YSKHYPVYSLNV 381 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHHHSCSSCHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--------HHHHcCCCChHH
Confidence 35788999998886542 2 2357999999999999999999999998763 11111112333
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 045555 96 IFVGIALIDMYCKCGDVEKAQRVFWKM 122 (175)
Q Consensus 96 ~~~~~~li~~~~~~~~~~~a~~~~~~~ 122 (175)
..+++.|...|...|++++|+.++++.
T Consensus 382 a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 382 ASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 346789999999999999999999986
No 202
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.29 E-value=0.0062 Score=43.73 Aligned_cols=140 Identities=14% Similarity=0.044 Sum_probs=90.0
Q ss_pred chHHHHhhccCC--C-cHHHHHHHHHHHHhcC--ChhHHHHHhhcCCC--C-ChhHHHHHHHHH----hcc---CChHHH
Q 045555 2 GFALEIFGNMKN--K-DVISWTTIVSGYINRG--QVDIARQYFAQMPE--R-DYVLWTAMIDGY----LRV---NRFREA 66 (175)
Q Consensus 2 ~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~--~-~~~~~~~li~~~----~~~---~~~~~a 66 (175)
++|+++++.+.+ | +..+|+.--..+...| ++++++..++.+.. | +..+|+.--..+ ... ++++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 356666666654 4 4566777777777777 88888888887663 3 445566554444 444 678888
Q ss_pred HHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHH--HHHHHHHhhcC---CChhhHHHHHHHHHhcC
Q 045555 67 LTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVE--KAQRVFWKMLR---KDKFTWTAMIVGLAISG 141 (175)
Q Consensus 67 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~~~~---~~~~~~~~li~~~~~~g 141 (175)
+++++++.+.. +-+-..|+.-.-.+.+.|+++ ++.+.++.+.+ .|...|+...-.+.+.|
T Consensus 130 L~~~~~~l~~~---------------pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 130 FDILEAMLSSD---------------PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKK 194 (306)
T ss_dssp HHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSG
T ss_pred HHHHHHHHHhC---------------CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence 88888887753 223444555555666666666 77777777744 25556665555555555
Q ss_pred C------hhHHHHHHHHHHHC
Q 045555 142 H------GDTALDMFSQMLRA 156 (175)
Q Consensus 142 ~------~~~a~~~~~~m~~~ 156 (175)
+ ++++++.+++++..
T Consensus 195 ~~~~~~~~~eEl~~~~~aI~~ 215 (306)
T 3dra_A 195 HLATDNTIDEELNYVKDKIVK 215 (306)
T ss_dssp GGCCHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHHHHHHh
Confidence 5 66777777766654
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.24 E-value=0.0025 Score=39.95 Aligned_cols=105 Identities=13% Similarity=-0.005 Sum_probs=83.1
Q ss_pred chHHHHhhccCC-CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC-CChhHHHHHHHHHhc----cCChHHHHHHHHHhHh
Q 045555 2 GFALEIFGNMKN-KDVISWTTIVSGYINRGQVDIARQYFAQMPE-RDYVLWTAMIDGYLR----VNRFREALTLFREMQT 75 (175)
Q Consensus 2 ~~A~~~~~~m~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~ 75 (175)
++|+++|+...+ .++... +-..|..-+.+++|.+.|++..+ .+...+..|-..|.. .+++++|+..|++..+
T Consensus 12 ~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 89 (138)
T 1klx_A 12 KKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACG 89 (138)
T ss_dssp HHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHc
Confidence 467888887665 344444 77888888889999999998765 577788888888888 7899999999999998
Q ss_pred CCCCCChHHHHHhhhccCcchhHHHHHHHHHHh----cCCHHHHHHHHHhhcCC
Q 045555 76 SNIRRDEFTTVRILTTFNNDIFVGIALIDMYCK----CGDVEKAQRVFWKMLRK 125 (175)
Q Consensus 76 ~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~ 125 (175)
.|. ...+..|-..|.. .+++++|.+.|+...+.
T Consensus 90 ~g~-----------------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 90 LND-----------------QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp TTC-----------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCC-----------------HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 762 3344568888888 89999999999987544
No 204
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.13 E-value=0.00096 Score=38.79 Aligned_cols=57 Identities=18% Similarity=0.173 Sum_probs=41.6
Q ss_pred HHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchh-HHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 53 MIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIF-VGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 53 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
....+.+.|++++|+..|++..+.. |+ +.. .+..+..+|.+.|++++|.+.|+...+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~--p~-------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE--PV-------------GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--SS-------------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CC-------------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3456777888888888888887753 22 233 456778888888888888888888744
No 205
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.11 E-value=0.016 Score=46.27 Aligned_cols=71 Identities=10% Similarity=0.040 Sum_probs=55.6
Q ss_pred HHhhccCC---CcHHHHHHHHHHHHhcCChhHHH-HHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhHhC
Q 045555 6 EIFGNMKN---KDVISWTTIVSGYINRGQVDIAR-QYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQTS 76 (175)
Q Consensus 6 ~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~-~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (175)
.+|++... .+...|-..+..+.+.|+.++|. ++|+.... | +...|-..+...-+.|+++.|.++|++++..
T Consensus 330 ~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 330 YVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 44555443 36677888888888899999996 99988653 3 5566777888888999999999999999874
No 206
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.03 E-value=0.016 Score=42.44 Aligned_cols=32 Identities=9% Similarity=0.092 Sum_probs=27.3
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 125 KDKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 125 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
++...+.-+.+.|...|+.++|.++++.+.++
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 35667788999999999999999999998754
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.99 E-value=0.00098 Score=43.07 Aligned_cols=110 Identities=15% Similarity=0.081 Sum_probs=76.8
Q ss_pred HhcCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCCh----------HHHHHHHHHhHhCCCCCChHHHHHhhhccC
Q 045555 27 INRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRF----------REALTLFREMQTSNIRRDEFTTVRILTTFN 93 (175)
Q Consensus 27 ~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~----------~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 93 (175)
.+.+.+++|...++...+ .+...|..+-.++.+.+++ ++|+..|++.++.. |+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~------------ 78 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PK------------ 78 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TT------------
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cC------------
Confidence 355667788888887653 4677788788888877764 59999999998854 22
Q ss_pred cchhHHHHHHHHHHhc-----------CCHHHHHHHHHhhc--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 045555 94 NDIFVGIALIDMYCKC-----------GDVEKAQRVFWKML--RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRAS 157 (175)
Q Consensus 94 ~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 157 (175)
....|..+..+|... |++++|.+.|++.. +|+...|..-+.. .++|.++.-++...+
T Consensus 79 -~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~------~~ka~el~~~~~~~~ 148 (158)
T 1zu2_A 79 -KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM------TAKAPQLHAEAYKQG 148 (158)
T ss_dssp -CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH------HHTHHHHHHHHHHSS
T ss_pred -cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH------HHhCHhccCcccccc
Confidence 345567788888876 48999999999984 5766655444443 345666666655544
No 208
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.95 E-value=0.026 Score=43.23 Aligned_cols=123 Identities=13% Similarity=0.189 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhhcCCCCC--hhHHHHHHHH-HhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccC
Q 045555 17 ISWTTIVSGYINRGQVDIARQYFAQMPERD--YVLWTAMIDG-YLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFN 93 (175)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 93 (175)
..|...+....+.++.+.|+.+|+....|. ...|...... +...++.+.|..+|+...+.. |+
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~------------ 352 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PD------------ 352 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TT------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CC------------
Confidence 467777777778889999999999884343 2333321111 112346999999999998853 22
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 94 NDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 94 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
+...+...++...+.|+.+.|..+|+... .....|...+..-...|+.+.+.+++++..+
T Consensus 353 -~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 353 -STLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12234456777788999999999999984 4678899999988889999999999988874
No 209
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=96.86 E-value=0.016 Score=42.05 Aligned_cols=143 Identities=11% Similarity=0.021 Sum_probs=101.3
Q ss_pred hHHHHhhccCC---CcHHHHHHHHHHHHhcC--ChhHHHHHhhcCCC---CChhHHHHHHHHHhccCC-hHHHHHHHHHh
Q 045555 3 FALEIFGNMKN---KDVISWTTIVSGYINRG--QVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNR-FREALTLFREM 73 (175)
Q Consensus 3 ~A~~~~~~m~~---~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~-~~~a~~~~~~m 73 (175)
+++.+++.+.. .+..+|+.-.-.+.+.| .+++++.+++.+.+ .|...|+.-.-.+.+.|. ++++++.++++
T Consensus 92 ~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~ 171 (331)
T 3dss_A 92 AELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSL 171 (331)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 45666666654 47788887777777777 48899999998875 577888888888888888 69999999999
Q ss_pred HhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhc--------------CCHHHHHHHHHhhc--CC-ChhhHHHHHHH
Q 045555 74 QTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKC--------------GDVEKAQRVFWKML--RK-DKFTWTAMIVG 136 (175)
Q Consensus 74 ~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~--------------~~~~~a~~~~~~~~--~~-~~~~~~~li~~ 136 (175)
.+..+ .+...|+.....+.+. +.++++.+.++... .| |...|+-+-..
T Consensus 172 I~~~p---------------~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~l 236 (331)
T 3dss_A 172 ITRNF---------------SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWL 236 (331)
T ss_dssp HHHCS---------------CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHCC---------------CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 98652 2233334444444333 45888999888884 34 66777755555
Q ss_pred HHhc-----------CChhHHHHHHHHHHHCCCCCcH
Q 045555 137 LAIS-----------GHGDTALDMFSQMLRASIRLDE 162 (175)
Q Consensus 137 ~~~~-----------g~~~~a~~~~~~m~~~g~~p~~ 162 (175)
+.+. +.++++.+.++++.+. .||.
T Consensus 237 l~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~ 271 (331)
T 3dss_A 237 LGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN 271 (331)
T ss_dssp HHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred HHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc
Confidence 5444 4578899999999874 4553
No 210
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.79 E-value=0.016 Score=46.54 Aligned_cols=46 Identities=24% Similarity=0.408 Sum_probs=26.8
Q ss_pred hcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 28 NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 28 ~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
+.|++++|.++.+.+ .+...|..|...+.+.|+++.|.+.|.++..
T Consensus 664 ~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 664 KVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp HHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred hcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 344444444444433 2345667777777777777777777776644
No 211
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=96.77 E-value=0.027 Score=41.16 Aligned_cols=140 Identities=11% Similarity=0.068 Sum_probs=99.8
Q ss_pred chHHHHhhccCC--C-cHHHHHHHHHHHHhcC-ChhHHHHHhhcCCC---CChhHHHHHHHHHhcc-C-ChHHHHHHHHH
Q 045555 2 GFALEIFGNMKN--K-DVISWTTIVSGYINRG-QVDIARQYFAQMPE---RDYVLWTAMIDGYLRV-N-RFREALTLFRE 72 (175)
Q Consensus 2 ~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~-~-~~~~a~~~~~~ 72 (175)
++|+++++.+.. | +..+|+.--..+...| .+++++.+++.+.. .+..+|+.--..+.+. + +++++++++++
T Consensus 71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k 150 (349)
T 3q7a_A 71 ERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHG 150 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 357777777665 3 5667887777777778 58999999988764 3666788777777666 6 78899999999
Q ss_pred hHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHH--------HHHHHHHhhcC---CChhhHHHHHHHHHhcC
Q 045555 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVE--------KAQRVFWKMLR---KDKFTWTAMIVGLAISG 141 (175)
Q Consensus 73 m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~--------~a~~~~~~~~~---~~~~~~~~li~~~~~~g 141 (175)
+.+... .+-..|+.-.-.+.+.|+++ ++.+.++++.+ .|...|+.....+.+.+
T Consensus 151 ~L~~dp---------------kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 151 SLLPDP---------------KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRP 215 (349)
T ss_dssp HTSSCT---------------TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTST
T ss_pred HHHhCC---------------CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence 987542 23344454444444444454 88888888854 37778888888887777
Q ss_pred C-------hhHHHHHHHHHHHC
Q 045555 142 H-------GDTALDMFSQMLRA 156 (175)
Q Consensus 142 ~-------~~~a~~~~~~m~~~ 156 (175)
+ ++++++.+++.+..
T Consensus 216 ~~~~~~~~~~eELe~~~~aI~~ 237 (349)
T 3q7a_A 216 GAETSSRSLQDELIYILKSIHL 237 (349)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHh
Confidence 6 68888888888764
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.70 E-value=0.069 Score=42.80 Aligned_cols=93 Identities=15% Similarity=0.228 Sum_probs=60.3
Q ss_pred hHHHHhhccCCCcHHHHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCCh
Q 045555 3 FALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDE 82 (175)
Q Consensus 3 ~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 82 (175)
+|.++.+.+ .+...|..+...+.+.|+++.|.+.|..+.. |..+...+...|+.+....+-+.....|.
T Consensus 670 ~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----~~~l~~l~~~~~~~~~~~~~~~~a~~~~~---- 738 (814)
T 3mkq_A 670 LARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----LESLFLLHSSFNNKEGLVTLAKDAETTGK---- 738 (814)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----HHHHHHHHHHTTCHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----hhhhHHHHHHcCCHHHHHHHHHHHHHcCc----
Confidence 445554444 4567899999999999999999999998876 33344444446666655555555555442
Q ss_pred HHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 045555 83 FTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM 122 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 122 (175)
++....+|.+.|++++|.+++.++
T Consensus 739 ----------------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 739 ----------------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp ----------------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred ----------------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 133444555566666666666654
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.53 E-value=0.043 Score=31.44 Aligned_cols=55 Identities=20% Similarity=0.220 Sum_probs=48.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcC--C-Chh-hHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 102 LIDMYCKCGDVEKAQRVFWKMLR--K-DKF-TWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 102 li~~~~~~~~~~~a~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
....+.+.|++++|.+.|+...+ | +.. .|..+..+|...|++++|.+.|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 56678899999999999999843 4 566 8888999999999999999999999875
No 214
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.48 E-value=0.065 Score=35.15 Aligned_cols=49 Identities=16% Similarity=0.265 Sum_probs=30.7
Q ss_pred HHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHh
Q 045555 25 GYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 75 (175)
Q Consensus 25 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (175)
.-.+.|+++.|.++-+.+ .+...|..|.....+.|+++-|.+.|.+...
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 344666666666665544 3455666666666666776666666666644
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.32 E-value=0.2 Score=36.89 Aligned_cols=139 Identities=9% Similarity=-0.045 Sum_probs=86.6
Q ss_pred CcHHHHHHHHHHHH--hc---CChhHHHHHhhcCCC--CC-hhHHHHHHHHHhc----cCCh-HHHH---HHHHHhHhCC
Q 045555 14 KDVISWTTIVSGYI--NR---GQVDIARQYFAQMPE--RD-YVLWTAMIDGYLR----VNRF-REAL---TLFREMQTSN 77 (175)
Q Consensus 14 ~~~~~~~~li~~~~--~~---~~~~~a~~~~~~m~~--~~-~~~~~~li~~~~~----~~~~-~~a~---~~~~~m~~~~ 77 (175)
.|..+|...+.+.. .. ....+|..+|++..+ |+ ...|..+.-++.. .+.. .... ..++......
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~ 271 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP 271 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc
Confidence 36677777776644 33 335789999998874 53 3344443333321 1111 1111 1111111111
Q ss_pred CCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhc--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 78 IRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML--RKDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 78 ~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
. -+.+...+..+.-.+...|++++|.+.+++.. .|+...|..+-..+.-.|++++|.+.|.+...
T Consensus 272 ~-------------~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 272 E-------------LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp G-------------GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred c-------------CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1 13344555666666777899999999999984 46766777777888899999999999999886
Q ss_pred CCCCCcHHHHHH
Q 045555 156 ASIRLDEVTYVG 167 (175)
Q Consensus 156 ~g~~p~~~t~~~ 167 (175)
. .|...||..
T Consensus 339 L--~P~~~t~~~ 348 (372)
T 3ly7_A 339 L--RPGANTLYW 348 (372)
T ss_dssp H--SCSHHHHHH
T ss_pred c--CCCcChHHH
Confidence 4 677777654
No 216
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=96.20 E-value=0.22 Score=36.15 Aligned_cols=148 Identities=9% Similarity=0.049 Sum_probs=102.0
Q ss_pred chHHHHhhccCC--C-cHHHHHHHHHHHHhcCC----------hhHHHHHhhcCCC---CChhHHHHHHHHHhccC--Ch
Q 045555 2 GFALEIFGNMKN--K-DVISWTTIVSGYINRGQ----------VDIARQYFAQMPE---RDYVLWTAMIDGYLRVN--RF 63 (175)
Q Consensus 2 ~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~--~~ 63 (175)
++|+.+++.+.. | +..+|+.--..+...+. +++++.+++.+.. .+..+|+.-...+.+.+ .+
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence 467788887765 4 44566654444433333 5678888887663 47778888877777777 48
Q ss_pred HHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCC-HHHHHHHHHhhcC---CChhhHHHHHHHHHh
Q 045555 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGD-VEKAQRVFWKMLR---KDKFTWTAMIVGLAI 139 (175)
Q Consensus 64 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~---~~~~~~~~li~~~~~ 139 (175)
+++++.++++.... +-+-..|+.-.-...+.|+ ++++.+.++.+.+ .|...|+.....+.+
T Consensus 127 ~~EL~~~~k~l~~d---------------prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 127 ARELELCARFLEAD---------------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 99999999999864 2344556666666777788 6899999999854 367778776666655
Q ss_pred c--------------CChhHHHHHHHHHHHCCCCC-cHHHHH
Q 045555 140 S--------------GHGDTALDMFSQMLRASIRL-DEVTYV 166 (175)
Q Consensus 140 ~--------------g~~~~a~~~~~~m~~~g~~p-~~~t~~ 166 (175)
. +.++++++.+.+.... .| |...++
T Consensus 192 l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~ 231 (331)
T 3dss_A 192 LHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWF 231 (331)
T ss_dssp HSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHH
T ss_pred hhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 4 4578888888888764 34 444443
No 217
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.19 E-value=0.095 Score=37.30 Aligned_cols=126 Identities=13% Similarity=0.100 Sum_probs=86.6
Q ss_pred CChhHHHHHhhcCCCCCh--hHHHHHHHH-Hhcc--CC------hHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhH
Q 045555 30 GQVDIARQYFAQMPERDY--VLWTAMIDG-YLRV--NR------FREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFV 98 (175)
Q Consensus 30 ~~~~~a~~~~~~m~~~~~--~~~~~li~~-~~~~--~~------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 98 (175)
++.....+.+....+.++ ..|..++.+ +... |. ...|...+++.++.. |+ ..+...
T Consensus 135 ~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLD--P~-----------~~~GsA 201 (301)
T 3u64_A 135 GDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLW--PS-----------YQEGAV 201 (301)
T ss_dssp SCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHC--TT-----------HHHHHH
T ss_pred cchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhC--CC-----------cccCHH
Confidence 333444555555554333 346655543 3332 32 567777777777743 33 112445
Q ss_pred HHHHHHHHHh-----cCCHHHHHHHHHhhc--CC--ChhhHHHHHHHHHhc-CChhHHHHHHHHHHHCCCC--CcHHHHH
Q 045555 99 GIALIDMYCK-----CGDVEKAQRVFWKML--RK--DKFTWTAMIVGLAIS-GHGDTALDMFSQMLRASIR--LDEVTYV 166 (175)
Q Consensus 99 ~~~li~~~~~-----~~~~~~a~~~~~~~~--~~--~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~--p~~~t~~ 166 (175)
|..+...|.+ .|+.++|++.|++.. .| +..++....+.+++. |+.++|.+.+++.+..... |+....+
T Consensus 202 ~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 202 WNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 6788889998 599999999999984 46 488888999999985 9999999999999998766 7766555
Q ss_pred HH
Q 045555 167 GV 168 (175)
Q Consensus 167 ~l 168 (175)
.+
T Consensus 282 ~~ 283 (301)
T 3u64_A 282 IL 283 (301)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 218
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.07 E-value=0.17 Score=39.54 Aligned_cols=113 Identities=8% Similarity=0.053 Sum_probs=88.5
Q ss_pred CChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCC----------hHHHHHHHHHhHhCCCCCChHHHHHhhhccCcch
Q 045555 30 GQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNR----------FREALTLFREMQTSNIRRDEFTTVRILTTFNNDI 96 (175)
Q Consensus 30 ~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 96 (175)
...++|.+.++.+.+ | +..+|+.--..+...|+ ++++++.++++.+.. +-+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~---------------pK~y 107 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN---------------PKSY 107 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC---------------TTCH
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC---------------CCCH
Confidence 345678999998774 4 55668877666766666 899999999998854 2345
Q ss_pred hHHHHHHHHHHhcC--CHHHHHHHHHhhcC---CChhhHHHHHHHHHhcC-ChhHHHHHHHHHHHCC
Q 045555 97 FVGIALIDMYCKCG--DVEKAQRVFWKMLR---KDKFTWTAMIVGLAISG-HGDTALDMFSQMLRAS 157 (175)
Q Consensus 97 ~~~~~li~~~~~~~--~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g 157 (175)
.+|+.-.-.+.+.+ +++++.+.++++.+ .+...|+.-.-.+.+.| .++++.+.+.++++..
T Consensus 108 ~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~ 174 (567)
T 1dce_A 108 GTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN 174 (567)
T ss_dssp HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC
Confidence 56677777788888 77999999999954 47788888888888888 8999999999998753
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.03 E-value=0.031 Score=32.46 Aligned_cols=65 Identities=12% Similarity=0.073 Sum_probs=53.1
Q ss_pred CcHHHHHHHHHHHHhcCC---hhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCC
Q 045555 14 KDVISWTTIVSGYINRGQ---VDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 78 (175)
Q Consensus 14 ~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 78 (175)
+|+..+..+..++...++ .++|..++++..+ | +......+...+.+.|++++|+..|+++++...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 466777777777765544 7999999998774 4 677888888999999999999999999998754
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.00 E-value=0.12 Score=38.01 Aligned_cols=114 Identities=11% Similarity=0.077 Sum_probs=75.6
Q ss_pred chHHHHhhccCC--Cc-HHHHHHHHHHHHh---cC-C-------hhHHHHHhhcCC--CCChhHHHHHHHHHhccCChHH
Q 045555 2 GFALEIFGNMKN--KD-VISWTTIVSGYIN---RG-Q-------VDIARQYFAQMP--ERDYVLWTAMIDGYLRVNRFRE 65 (175)
Q Consensus 2 ~~A~~~~~~m~~--~~-~~~~~~li~~~~~---~~-~-------~~~a~~~~~~m~--~~~~~~~~~li~~~~~~~~~~~ 65 (175)
.+|+.+|++..+ |+ ...|..+..+|.. .+ . ...+..-...+. ..+..+|..+...+...|++++
T Consensus 216 ~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~ 295 (372)
T 3ly7_A 216 NRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDE 295 (372)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHH
Confidence 468888888876 53 3445544444321 11 1 111222111221 3477788888777888899999
Q ss_pred HHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhc--CCChhhHH
Q 045555 66 ALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML--RKDKFTWT 131 (175)
Q Consensus 66 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~~~~~~ 131 (175)
|...+++....+ |+...| ..+...+.-.|++++|.+.|++.. .|...+|.
T Consensus 296 A~~~l~rAl~Ln--~s~~a~--------------~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~ 347 (372)
T 3ly7_A 296 SYQAINTGIDLE--MSWLNY--------------VLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347 (372)
T ss_dssp HHHHHHHHHHHC--CCHHHH--------------HHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHH
T ss_pred HHHHHHHHHhcC--CCHHHH--------------HHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHH
Confidence 999999999975 554443 578888999999999999999884 46666654
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.93 E-value=0.085 Score=30.56 Aligned_cols=63 Identities=11% Similarity=0.008 Sum_probs=49.9
Q ss_pred cchhHHHHHHHHHHhcCC---HHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 94 NDIFVGIALIDMYCKCGD---VEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 94 ~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
.+...+..+..++...++ .++|..++++... | ++.....+...+.+.|++++|.+.++++++.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445566667777754444 7999999999854 4 5677777888999999999999999999975
No 222
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.75 E-value=0.078 Score=39.29 Aligned_cols=122 Identities=14% Similarity=0.129 Sum_probs=81.1
Q ss_pred ChhHHHHHHHHHh---ccCChHHHHHHHHHhHhC--CC-CCChH--HHHHhhh-c-cCcchhHHHHHHHHHHhcCCHHHH
Q 045555 46 DYVLWTAMIDGYL---RVNRFREALTLFREMQTS--NI-RRDEF--TTVRILT-T-FNNDIFVGIALIDMYCKCGDVEKA 115 (175)
Q Consensus 46 ~~~~~~~li~~~~---~~~~~~~a~~~~~~m~~~--~~-~p~~~--~~~~l~~-~-~~~~~~~~~~li~~~~~~~~~~~a 115 (175)
|...|..++..-. ..|+.+.|.+.+++.... |. -++.. .|..-.. . -.--......+++.+...|++++|
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a 190 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 4555666665433 357888888888888764 31 12211 0100000 0 000112344677888899999999
Q ss_pred HHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCcHHHHHH
Q 045555 116 QRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMFSQMLR-----ASIRLDEVTYVG 167 (175)
Q Consensus 116 ~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t~~~ 167 (175)
......... | +...|..+|.++.+.|+..+|.+.|++..+ -|+.|...+-..
T Consensus 191 ~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 191 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 988888743 4 777999999999999999999999988643 499998876443
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.69 E-value=0.082 Score=31.10 Aligned_cols=65 Identities=14% Similarity=0.044 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhhcC----------CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcH
Q 045555 96 IFVGIALIDMYCKCGDVEKAQRVFWKMLR----------KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162 (175)
Q Consensus 96 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~----------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 162 (175)
..-+-.|...+.+.|+++.|...|+...+ +...++..+..++.+.|++++|...+++..+ +.|+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 33445789999999999999999998732 1356789999999999999999999999986 35654
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.40 E-value=0.27 Score=31.38 Aligned_cols=89 Identities=11% Similarity=0.031 Sum_probs=61.6
Q ss_pred hHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcC---CHHHHHHHHHhhcCCC-----hhhHHHHH
Q 045555 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCG---DVEKAQRVFWKMLRKD-----KFTWTAMI 134 (175)
Q Consensus 63 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~-----~~~~~~li 134 (175)
...+.+-|.+....|. ++..+.-.+.-++++.+ +++++..++++..+.+ ...+-.+-
T Consensus 14 l~~~~~~y~~e~~~~~---------------~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LA 78 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS---------------VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 78 (152)
T ss_dssp HHHHHHHHHHHHHTTC---------------CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCC---------------CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHH
Confidence 4555666666666554 22333335777888888 6779999999885543 34566677
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHH
Q 045555 135 VGLAISGHGDTALDMFSQMLRASIRLDEVTYVGV 168 (175)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 168 (175)
-+|.+.|++++|.+.++.+++. .|+..--..|
T Consensus 79 v~~~kl~~Y~~A~~y~~~lL~i--eP~n~QA~~L 110 (152)
T 1pc2_A 79 VGNYRLKEYEKALKYVRGLLQT--EPQNNQAKEL 110 (152)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHH
Confidence 7889999999999999999974 6754443333
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.36 E-value=0.13 Score=30.28 Aligned_cols=62 Identities=6% Similarity=-0.015 Sum_probs=52.7
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCC----------CChhHHHHHHHHHhccCChHHHHHHHHHhHhC
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPE----------RDYVLWTAMIDGYLRVNRFREALTLFREMQTS 76 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (175)
++..+..|...+.+.|++..|..-|+...+ +....+..|..++.+.|+++.|+..+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 456677899999999999999999987542 23457899999999999999999999999884
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.98 E-value=0.08 Score=37.70 Aligned_cols=80 Identities=11% Similarity=0.086 Sum_probs=63.7
Q ss_pred HHHHhhccCC--Cc---HHHHHHHHHHHHhc-----CChhHHHHHhhcCCC--C--ChhHHHHHHHHHhcc-CChHHHHH
Q 045555 4 ALEIFGNMKN--KD---VISWTTIVSGYINR-----GQVDIARQYFAQMPE--R--DYVLWTAMIDGYLRV-NRFREALT 68 (175)
Q Consensus 4 A~~~~~~m~~--~~---~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~--~--~~~~~~~li~~~~~~-~~~~~a~~ 68 (175)
|...+++..+ |+ ...|..+...|.+. |+.++|.+.|++..+ | +..++......+++. |+.+++.+
T Consensus 182 A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~ 261 (301)
T 3u64_A 182 AVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDE 261 (301)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHH
Confidence 4444444443 44 66899999999995 999999999999763 5 478888889999885 99999999
Q ss_pred HHHHhHhCCCC--CChH
Q 045555 69 LFREMQTSNIR--RDEF 83 (175)
Q Consensus 69 ~~~~m~~~~~~--p~~~ 83 (175)
.+++.++.... |+..
T Consensus 262 ~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 262 ALDRALAIDPESVPHNK 278 (301)
T ss_dssp HHHHHHHCCGGGCSSCH
T ss_pred HHHHHHcCCCCCCCChh
Confidence 99999998765 5543
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.97 E-value=0.44 Score=31.23 Aligned_cols=120 Identities=13% Similarity=0.118 Sum_probs=78.2
Q ss_pred chHHHHhhccCCCcHHHHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCC
Q 045555 2 GFALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81 (175)
Q Consensus 2 ~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 81 (175)
+.|.++.+.+ .+...|..|.....+.|+++.|.+.|..... +..+.--|.-.|+.++-..+-+.....|-
T Consensus 22 ~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla~iA~~~g~--- 91 (177)
T 3mkq_B 22 DAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQNIAQTRED--- 91 (177)
T ss_dssp HHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHHHHHHHCcc---
Confidence 3455555544 4677899999999999999999999999876 44444455556777666655555444442
Q ss_pred hHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 045555 82 EFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQM 153 (175)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 153 (175)
++.....+...|+++++.+++.+..+.. --.-.-...|.-+.|.++..++
T Consensus 92 -----------------~n~af~~~l~lGdv~~~i~lL~~~~r~~-----eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 92 -----------------FGSMLLNTFYNNSTKERSSIFAEGGSLP-----LAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp -----------------HHHHHHHHHHHTCHHHHHHHHHHTTCHH-----HHHHHHHHTTCHHHHHHHHHHT
T ss_pred -----------------HHHHHHHHHHcCCHHHHHHHHHHCCChH-----HHHHHHHHcCcHHHHHHHHHHh
Confidence 2456667777888888888887653311 1111111255667777776665
No 228
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.05 E-value=0.65 Score=29.29 Aligned_cols=134 Identities=11% Similarity=0.086 Sum_probs=86.6
Q ss_pred HHhcCChhHHHHHhhcCCC-CChhHHHHHHHHHhccCChHHHHHHHHHhHhCC-CCC--ChHHHHHhhhccCcchhHHHH
Q 045555 26 YINRGQVDIARQYFAQMPE-RDYVLWTAMIDGYLRVNRFREALTLFREMQTSN-IRR--DEFTTVRILTTFNNDIFVGIA 101 (175)
Q Consensus 26 ~~~~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p--~~~~~~~l~~~~~~~~~~~~~ 101 (175)
+.-.|..++..++..+..+ .+..-||-+|--....-+=+-..++++.+=+.- +.+ +.-+-..-......+....+.
T Consensus 17 ~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~vd~ 96 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVNK 96 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHHH
T ss_pred HHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHHHHH
Confidence 4456777888888777664 344445555544444444444444444442210 000 100000000012345566788
Q ss_pred HHHHHHhcCCHHHHHHHHHhhc---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 045555 102 LIDMYCKCGDVEKAQRVFWKML---RKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159 (175)
Q Consensus 102 li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 159 (175)
.++.....|+-|.-.++..++. .+++...-.+..+|.+-|+..+|.+++++.-++|++
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 8999999999999999999952 346788888999999999999999999999999975
No 229
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.71 E-value=0.29 Score=36.20 Aligned_cols=68 Identities=21% Similarity=0.270 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhHh-----CCCCCChHHH
Q 045555 18 SWTTIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQT-----SNIRRDEFTT 85 (175)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~ 85 (175)
+...++..+...|++++|......+.. | +...|..+|.++.+.|+..+|++.|+++.+ .|+.|++.+-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 344566777889999999988887663 4 777899999999999999999999999866 3888887665
No 230
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.15 E-value=0.26 Score=31.49 Aligned_cols=79 Identities=14% Similarity=0.056 Sum_probs=53.7
Q ss_pred hHHHHHhhcC---CCCChhHHHHHHHHHhccC---ChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHH
Q 045555 33 DIARQYFAQM---PERDYVLWTAMIDGYLRVN---RFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMY 106 (175)
Q Consensus 33 ~~a~~~~~~m---~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~ 106 (175)
..+++-|... ..++..+.-.+..++++.+ +.++++.++++..+.+ .|+. ....+=.+.-+|
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~------------~rd~lY~LAv~~ 81 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEE------------QRDYVFYLAVGN 81 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHH------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-Cccc------------hHHHHHHHHHHH
Confidence 3444444432 1356677777778888888 6779999999999865 1210 011112477778
Q ss_pred HhcCCHHHHHHHHHhhcC
Q 045555 107 CKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~ 124 (175)
.+.|++++|.+.++...+
T Consensus 82 ~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 82 YRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HHTSCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHh
Confidence 999999999999999843
No 231
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.08 E-value=3.7 Score=34.91 Aligned_cols=131 Identities=13% Similarity=0.141 Sum_probs=82.5
Q ss_pred HHHhhccCCCcHHHHHHHHHHHHhcCChhHHHHHhhcCCCC--------------------------ChhHHHHHHHHHh
Q 045555 5 LEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER--------------------------DYVLWTAMIDGYL 58 (175)
Q Consensus 5 ~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------------------------~~~~~~~li~~~~ 58 (175)
.++....+ .|+..--.+..+|...|++++|.+.|++.... -..-|..++..+-
T Consensus 832 ~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe 910 (1139)
T 4fhn_B 832 MQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLF 910 (1139)
T ss_dssp HHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHH
T ss_pred HHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHH
Confidence 33333333 34444455667788889999999998876421 0112566777777
Q ss_pred ccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC--ChhhHHHHHHH
Q 045555 59 RVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRK--DKFTWTAMIVG 136 (175)
Q Consensus 59 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~~ 136 (175)
+.+.++.++++-....+... ++.... ....|..+.+++...|++++|...+-.+..+ -..+...+|..
T Consensus 911 ~~~~~~~vi~fa~lAi~~~~-~~~~~~---------~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~ 980 (1139)
T 4fhn_B 911 EESAYIDALEFSLLADASKE-TDDEDL---------SIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQ 980 (1139)
T ss_dssp HTSCCHHHHHHHHHHHHHCC-SCCHHH---------HHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhcc-CCChhh---------HHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 77777777776666555321 111110 1235788899999999999998888777443 34566777777
Q ss_pred HHhcCChhHH
Q 045555 137 LAISGHGDTA 146 (175)
Q Consensus 137 ~~~~g~~~~a 146 (175)
+|..|+.+.-
T Consensus 981 lce~~~~~~L 990 (1139)
T 4fhn_B 981 LTKQGKINQL 990 (1139)
T ss_dssp HHHHCCHHHH
T ss_pred HHhCCChhhh
Confidence 7776665443
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.93 E-value=1.1 Score=28.59 Aligned_cols=110 Identities=9% Similarity=0.089 Sum_probs=73.6
Q ss_pred CCChhHHHHHHHHHhccCCh------HHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhH--HHHHHHHHHhcCCHHHH
Q 045555 44 ERDYVLWTAMIDGYLRVNRF------REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFV--GIALIDMYCKCGDVEKA 115 (175)
Q Consensus 44 ~~~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~--~~~li~~~~~~~~~~~a 115 (175)
..|..+|-..+.-.-+.|++ +...++|++.... ++|+.. ...-... |-.-. .+...+++++|
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~--------~~wrrYI~LWIrYA-~~~ei~D~d~a 79 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKY--------GQNESFARIQVRFA-ELKAIQEPDDA 79 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGG--------TTCHHHHHHHHHHH-HHHHHHCGGGC
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCcccc--------ccHHHHHHHHHHHH-HHHHhcCHHHH
Confidence 34667777777777777887 7777888877664 555421 1111111 11111 12344899999
Q ss_pred HHHHHhhcC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHH
Q 045555 116 QRVFWKMLR---KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEV 163 (175)
Q Consensus 116 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 163 (175)
.++|+.+.. .=...|-....--.+.|++.+|.+++...+..+-+|...
T Consensus 80 R~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 80 RDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 999999842 124567777777789999999999999999887777653
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.37 E-value=2.4 Score=34.41 Aligned_cols=133 Identities=16% Similarity=0.069 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhcCC-hhHHHHHhhcCCC--CChhH--HHHHHHHHhccCC-hHHHHHHHHHhHhC------CCCCChHHH
Q 045555 18 SWTTIVSGYINRGQ-VDIARQYFAQMPE--RDYVL--WTAMIDGYLRVNR-FREALTLFREMQTS------NIRRDEFTT 85 (175)
Q Consensus 18 ~~~~li~~~~~~~~-~~~a~~~~~~m~~--~~~~~--~~~li~~~~~~~~-~~~a~~~~~~m~~~------~~~p~~~~~ 85 (175)
....++..+.-.|+ .+.|.++|+.+.+ |...+ ...++..+.+.++ --+|+.+..+..+. ...+.....
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 34566666666766 5778888888764 32222 2233433333332 33455555555431 122211111
Q ss_pred HHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 045555 86 VRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMFSQM 153 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m 153 (175)
..+. +.+..+...-.+-+...|+++.|.++-+..+. | +..+|..|..+|...|+++.|+=.++-+
T Consensus 330 ~~~~---~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLM---NCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccc---CcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 0000 11112233345556678999999999999854 5 7889999999999999999999988887
No 234
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.34 E-value=1.4 Score=26.09 Aligned_cols=60 Identities=12% Similarity=0.020 Sum_probs=41.9
Q ss_pred ChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC---CChhhHHHHHH
Q 045555 62 RFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR---KDKFTWTAMIV 135 (175)
Q Consensus 62 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~ 135 (175)
+.-+..+-++.+....+.|++... .+.+.+|.|.+++..|.++|+.++. ....+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii--------------~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKII--------------DAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHH--------------HHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHH--------------HHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 455666666777766665555444 7888899999999999999988843 23445666654
No 235
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.75 E-value=2.1 Score=32.33 Aligned_cols=96 Identities=13% Similarity=0.121 Sum_probs=72.1
Q ss_pred HHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC------
Q 045555 51 TAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR------ 124 (175)
Q Consensus 51 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~------ 124 (175)
..|...+-..|++.+|.+++.++...-...+.... -...+...+..|...+++..|..+..+...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~---------kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~ 211 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSE---------KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP 211 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH---------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHH---------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC
Confidence 46677788899999999999999764222221111 134567889999999999999999988721
Q ss_pred C----ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 125 K----DKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 125 ~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
+ -...|...+..+...+++.+|.+.|.+..+
T Consensus 212 ~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 212 KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 1 234677788888899999999999888865
No 236
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.43 E-value=1.4 Score=32.98 Aligned_cols=96 Identities=10% Similarity=0.015 Sum_probs=68.0
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC----
Q 045555 49 LWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR---- 124 (175)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---- 124 (175)
+...+...|.+.|++++|.+.|.+++.....+. --..++-.++..+...+++..+.....+...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~------------~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~ 200 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG------------AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK 200 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC------------SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH------------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc
Confidence 466788889999999999999999987543322 1234556789999999999999999888722
Q ss_pred -CChhhHH----HHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 125 -KDKFTWT----AMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 125 -~~~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
++...-+ .-...+...+++.+|.+.|.+....
T Consensus 201 ~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 201 GGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp CCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 2222211 1122234578999999999887653
No 237
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=89.38 E-value=0.0051 Score=47.05 Aligned_cols=117 Identities=9% Similarity=0.095 Sum_probs=83.4
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCc
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNN 94 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 94 (175)
.+..|+.+..+..+.+++.+|.+.|-+.. |...|..+|....+.|.+++-+..+.-.++..-.|..
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~--Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~I------------ 118 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKAD--DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYV------------ 118 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCCS--CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTT------------
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhCC--ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc------------
Confidence 55678999999999999999988775544 5555788999999999999998887766655333322
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 045555 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQ 152 (175)
Q Consensus 95 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 152 (175)
=+.|+-+|++.+++.+-+++... |+..-...+.+-|...|.++.|.-+|..
T Consensus 119 ----DteLi~ayAk~~rL~elEefl~~---~N~A~iq~VGDrcf~e~lYeAAKilys~ 169 (624)
T 3lvg_A 119 ----ETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNN 169 (624)
T ss_dssp ----THHHHHHHHTSCSSSTTTSTTSC---CSSSCTHHHHHHHHHSCCSTTSSTTGGG
T ss_pred ----HHHHHHHHHhhCcHHHHHHHHcC---CCcccHHHHHHHHHHccCHHHHHHHHHh
Confidence 25699999999998876655443 5555555666666666666666555443
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.05 E-value=1.7 Score=26.71 Aligned_cols=81 Identities=11% Similarity=0.010 Sum_probs=53.2
Q ss_pred CChhHHHHHhhcCC---CCChhHHHHHHHHHhccCChHH---HHHHHHHhHhCCCCC-ChHHHHHhhhccCcchhHHHHH
Q 045555 30 GQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFRE---ALTLFREMQTSNIRR-DEFTTVRILTTFNNDIFVGIAL 102 (175)
Q Consensus 30 ~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~~l 102 (175)
.....+.+-|.... .++..+--.+..++++..+... ++.+++++.+.+- | ... ...=.|
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~-p~~~R-------------d~lY~L 80 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS-KEEQR-------------DYVFYL 80 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC-HHHHH-------------HHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-cchHH-------------HHHHHH
Confidence 33344444454332 2566666667778888887655 9999999988641 2 111 111257
Q ss_pred HHHHHhcCCHHHHHHHHHhhcC
Q 045555 103 IDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 103 i~~~~~~~~~~~a~~~~~~~~~ 124 (175)
.-++.+.|++++|.+.++.+.+
T Consensus 81 Avg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 81 AVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHH
Confidence 7788999999999999999843
No 239
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=88.35 E-value=0.034 Score=42.64 Aligned_cols=115 Identities=14% Similarity=0.111 Sum_probs=87.2
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHhhcCCC--CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhc
Q 045555 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTT 91 (175)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (175)
.|+..|..+|....+.|.+++-...+...++ ++..+=+.|+-+|++.++..+-.+++ . .|+....
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl----~---~~N~A~i------ 147 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHI------ 147 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTT----S---CCSSSCT------
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHH----c---CCCcccH------
Confidence 5788899999999999999999999988875 46677789999999999975533322 1 2332222
Q ss_pred cCcchhHHHHHHHHHHhcCCHHHHHHHHHhhc------------------------CCChhhHHHHHHHHHhcCChhHHH
Q 045555 92 FNNDIFVGIALIDMYCKCGDVEKAQRVFWKML------------------------RKDKFTWTAMIVGLAISGHGDTAL 147 (175)
Q Consensus 92 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~------------------------~~~~~~~~~li~~~~~~g~~~~a~ 147 (175)
..+.+-|...|.++.|.-+|..+. ..++.||-.+-.+|...+++.-|-
T Consensus 148 --------q~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAq 219 (624)
T 3lvg_A 148 --------QQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQ 219 (624)
T ss_dssp --------HHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTT
T ss_pred --------HHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHH
Confidence 467888888888888888887761 137789999999999888887664
Q ss_pred HH
Q 045555 148 DM 149 (175)
Q Consensus 148 ~~ 149 (175)
-.
T Consensus 220 ic 221 (624)
T 3lvg_A 220 MC 221 (624)
T ss_dssp HH
T ss_pred Hh
Confidence 33
No 240
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=88.35 E-value=1.7 Score=33.13 Aligned_cols=72 Identities=14% Similarity=0.075 Sum_probs=37.8
Q ss_pred chHHHHhhccCCC--cHHHHHHHHHHHHhc-CChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHh
Q 045555 2 GFALEIFGNMKNK--DVISWTTIVSGYINR-GQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREM 73 (175)
Q Consensus 2 ~~A~~~~~~m~~~--~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m 73 (175)
+.|+++|+....| +...|......-.+. ++.+.|+.+|+...+ | +...|...+.-..+.|+.+.|..+|+..
T Consensus 303 ~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 303 ELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566666666322 333343222222222 257777777775542 2 2233444555556667777777777776
No 241
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.65 E-value=3.6 Score=25.73 Aligned_cols=59 Identities=12% Similarity=0.009 Sum_probs=38.5
Q ss_pred hHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC---CChhhHHHHHH
Q 045555 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR---KDKFTWTAMIV 135 (175)
Q Consensus 63 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~ 135 (175)
.-+..+-++++....+.| ++.+..+.+.+|.|.+++..|.++|+..+. +...+|..++.
T Consensus 69 ~wElrrglN~l~~~DlVP--------------eP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVP--------------EPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCC--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCC--------------CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 344445555555555444 444447888899999999999999988743 34445666654
No 242
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.60 E-value=12 Score=31.80 Aligned_cols=148 Identities=11% Similarity=-0.027 Sum_probs=98.2
Q ss_pred HHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCC------hHHHHHhhh--
Q 045555 19 WTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD------EFTTVRILT-- 90 (175)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~------~~~~~~l~~-- 90 (175)
...++..+.+.+..+.+.++.....+.. ..-..+..++...|++++|.+.|.+.-. |+..+ ......+..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~~~-~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNSDP-IAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCCCH-HHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccc
Confidence 3456667778888888888776665543 3345677789999999999999987632 22111 112222221
Q ss_pred -ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC---C-C----hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc
Q 045555 91 -TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR---K-D----KFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161 (175)
Q Consensus 91 -~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 161 (175)
....-..-|..++..+.+.+.++.+.++-+...+ + + ...|..+++++...|++++|...+-.+.+...+
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r-- 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK-- 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--
Confidence 1122234678899999999999988877665521 2 2 226889999999999999999999887765443
Q ss_pred HHHHHHHHh
Q 045555 162 EVTYVGVLS 170 (175)
Q Consensus 162 ~~t~~~ll~ 170 (175)
......|+.
T Consensus 971 ~~cLr~LV~ 979 (1139)
T 4fhn_B 971 KSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 233444444
No 243
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=87.51 E-value=3.8 Score=25.87 Aligned_cols=82 Identities=11% Similarity=0.051 Sum_probs=59.4
Q ss_pred hcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHH
Q 045555 28 NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYC 107 (175)
Q Consensus 28 ~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~ 107 (175)
..|+.....+.|-.+...+.+ ...-++.+...|.-+.-.+++.++.... + |++...-.+..+|.
T Consensus 73 ~C~NlKrVi~C~~~~n~~se~-vd~ALd~lv~~~KkDqLdki~~~~l~n~-~--------------~~~~~l~kia~Ay~ 136 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNTLNEH-VNKALDILVIQGKRDKLEEIGREILKNN-E--------------VSASILVAIANALR 136 (172)
T ss_dssp GCSCTHHHHHHHHHTTCCCHH-HHHHHHHHHHTTCHHHHHHHHHHHC--C-C--------------SCHHHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcchHHH-HHHHHHHHHHhccHhHHHHHHHHHhccC-C--------------CChHHHHHHHHHHH
Confidence 356666666666666555554 5777888899999999999999965532 2 33334457999999
Q ss_pred hcCCHHHHHHHHHhhcCC
Q 045555 108 KCGDVEKAQRVFWKMLRK 125 (175)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~ 125 (175)
+.|+..+|.+++.+.-+.
T Consensus 137 Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 137 RVGDERDATTLLIEACKK 154 (172)
T ss_dssp HTTCHHHHHHHHHHHHHT
T ss_pred HhcchhhHHHHHHHHHHh
Confidence 999999999999887554
No 244
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.28 E-value=7.4 Score=28.91 Aligned_cols=141 Identities=11% Similarity=-0.004 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhhcCCC--------CChhHHHHHHHHHhccC-ChHHHHHHHHHhHhCCCCCChHHHHH
Q 045555 17 ISWTTIVSGYINRGQVDIARQYFAQMPE--------RDYVLWTAMIDGYLRVN-RFREALTLFREMQTSNIRRDEFTTVR 87 (175)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~--------~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ 87 (175)
.+...|...|.+.|+.++..+++...++ .....-..|+..+.... ..+.-+++..+..+.... +..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~f-- 96 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTF-- 96 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHH--
Confidence 4567889999999999999999998875 13445677888887753 455556666665542110 00111
Q ss_pred hhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC----CC-----hhhHHHHHHHHHhcCChhHHHHHHHHHHHC--
Q 045555 88 ILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR----KD-----KFTWTAMIVGLAISGHGDTALDMFSQMLRA-- 156 (175)
Q Consensus 88 l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-- 156 (175)
....+-.-++..|...|++.+|.+++..+.+ .| ..+|-.-+..|...+++.++...+......
T Consensus 97 ------lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ 170 (394)
T 3txn_A 97 ------LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTAN 170 (394)
T ss_dssp ------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc
Confidence 0011123689999999999999999988843 12 345667778899999999999999887642
Q ss_pred CCCCcHHHHH
Q 045555 157 SIRLDEVTYV 166 (175)
Q Consensus 157 g~~p~~~t~~ 166 (175)
.+.|++.+..
T Consensus 171 ai~~~p~i~a 180 (394)
T 3txn_A 171 AIYCPPKVQG 180 (394)
T ss_dssp HSCCCHHHHH
T ss_pred cCCCCHHHHH
Confidence 3435554443
No 245
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.82 E-value=3.3 Score=24.41 Aligned_cols=73 Identities=14% Similarity=0.073 Sum_probs=54.3
Q ss_pred chHHHHhhccCC-CcHHHHHHHHH--HHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCC
Q 045555 2 GFALEIFGNMKN-KDVISWTTIVS--GYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 77 (175)
Q Consensus 2 ~~A~~~~~~m~~-~~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 77 (175)
+||..+=+++.. ++ .-.-.||+ .+.+.|++.+|..+.+.+.-||...|-.|.. -+.|..+++..-+.++..+|
T Consensus 23 qEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 23 EEALCIAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 345555554443 44 44444554 4778999999999999999999999988765 47788888888888888776
No 246
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.53 E-value=3.5 Score=24.36 Aligned_cols=73 Identities=16% Similarity=0.120 Sum_probs=53.8
Q ss_pred chHHHHhhccCC-CcHHHHHHHHH--HHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCC
Q 045555 2 GFALEIFGNMKN-KDVISWTTIVS--GYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 77 (175)
Q Consensus 2 ~~A~~~~~~m~~-~~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 77 (175)
+||..+=+++.. ++ .-.-.||+ .+.+.|++.+|..+.+.+.-||...|-.|.. -+.|..+++..-+.++..+|
T Consensus 24 qEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 24 EEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 345555554443 44 44444554 4778999999999999999999999988865 47788888888888887776
No 247
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=85.77 E-value=5.4 Score=25.85 Aligned_cols=143 Identities=13% Similarity=0.126 Sum_probs=67.6
Q ss_pred hhccCCCcHHHHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHH
Q 045555 8 FGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVR 87 (175)
Q Consensus 8 ~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 87 (175)
++.+..+|...-..-+..+.+.+..+....+.+.+..++..+-...+.++.+.|..+ +...+.++... ++...-..
T Consensus 20 i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~d---~~~~vr~~ 95 (201)
T 3ltj_A 20 IKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALKD---EDGWVRQS 95 (201)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SSHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHcC---CCHHHHHH
Confidence 333444566666666666666666555555555555555554444445555544432 22222222221 12111111
Q ss_pred hhh-----------------ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhcCChhHHHHHH
Q 045555 88 ILT-----------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMF 150 (175)
Q Consensus 88 l~~-----------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 150 (175)
.+. --.++..+-...+.++++.++.+....+...+..++..+-...+.++.+.|. +++...+
T Consensus 96 a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L 174 (201)
T 3ltj_A 96 AAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAM 174 (201)
T ss_dssp HHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHH
Confidence 110 0123334444556666666654444344444444555555666666666654 4455555
Q ss_pred HHHHH
Q 045555 151 SQMLR 155 (175)
Q Consensus 151 ~~m~~ 155 (175)
.++.+
T Consensus 175 ~~~l~ 179 (201)
T 3ltj_A 175 EKLAE 179 (201)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55554
No 248
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=85.55 E-value=5.7 Score=25.96 Aligned_cols=144 Identities=12% Similarity=0.114 Sum_probs=73.3
Q ss_pred HhhccCCCcHHHHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHH
Q 045555 7 IFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTV 86 (175)
Q Consensus 7 ~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 86 (175)
+.+.+..+|...-...+..+++.|..+....+.+.+..++..+-...+.++.+.++. ++...+.++.+. ++...-.
T Consensus 24 L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~~---~~~~vr~ 99 (211)
T 3ltm_A 24 YIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALKD---EDGWVRQ 99 (211)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SSHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHcC---CCHHHHH
Confidence 344444566666666666666666655555555656656555544555555555543 222223333221 1211111
Q ss_pred Hhhh-----------------ccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhcCChhHHHHH
Q 045555 87 RILT-----------------TFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDM 149 (175)
Q Consensus 87 ~l~~-----------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 149 (175)
..+. --.++..+-...+.++++.+..+....+..-+..++..+-...+.++.+.+. +++...
T Consensus 100 ~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~ 178 (211)
T 3ltm_A 100 SAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAA 178 (211)
T ss_dssp HHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHH
Confidence 1110 0123444555666666666665444444444445566666666777776665 455566
Q ss_pred HHHHHH
Q 045555 150 FSQMLR 155 (175)
Q Consensus 150 ~~~m~~ 155 (175)
+.++.+
T Consensus 179 L~~~l~ 184 (211)
T 3ltm_A 179 MEKLAE 184 (211)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666554
No 249
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=85.43 E-value=4 Score=24.07 Aligned_cols=63 Identities=13% Similarity=0.021 Sum_probs=48.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHH
Q 045555 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYV 166 (175)
Q Consensus 101 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 166 (175)
.-+..+...|++++|..+.+...-||...|-++-. .+.|.-+++..-+.++..+| .|....|.
T Consensus 44 IR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 44 IRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 34556778999999999999999999999887754 47888889998888888776 34443443
No 250
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=85.42 E-value=5.8 Score=25.92 Aligned_cols=60 Identities=18% Similarity=0.185 Sum_probs=37.5
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 045555 94 NDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML 154 (175)
Q Consensus 94 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (175)
++..+-...+.++++.++.+....+...+..++..+-...+.++.+.|+. ++...+.++.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l 152 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKAL 152 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHH
Confidence 45556667777777777765555555555566776766777777776654 3444454444
No 251
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=85.04 E-value=5.5 Score=25.27 Aligned_cols=62 Identities=18% Similarity=0.294 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcCCC---hhhHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCC
Q 045555 99 GIALIDMYCKCGDVEKAQRVFWKMLRKD---KFTWTAMIVGLAISGH--GDTALDMFSQMLRASIRL 160 (175)
Q Consensus 99 ~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p 160 (175)
.+.+++=|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+.+++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 3578999999999999999999997773 3355556666665432 456788888888776444
No 252
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.96 E-value=4.3 Score=23.98 Aligned_cols=62 Identities=18% Similarity=0.144 Sum_probs=48.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHH
Q 045555 101 ALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTY 165 (175)
Q Consensus 101 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 165 (175)
.-+..+...|++++|..+.+...-||...|-++-.+ +.|.-+++..-+.++..+| .|....|
T Consensus 45 IR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 45 IRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 345567789999999999999999999998877554 6788888888888887766 3443344
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.41 E-value=3.3 Score=29.07 Aligned_cols=68 Identities=15% Similarity=0.148 Sum_probs=48.9
Q ss_pred HHHHhcCCHHHHHHHHHhhcC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCcHHHHHHHHhh
Q 045555 104 DMYCKCGDVEKAQRVFWKMLR--K-DKFTWTAMIVGLAISGHGDTALDMFSQMLRA--SIRLDEVTYVGVLSA 171 (175)
Q Consensus 104 ~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~ 171 (175)
....+.|+++++.+....-++ | |...-..++..+|-.|++++|.+-++-..+. ...|-..+|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH
Confidence 345678888888888877754 3 6777778899999999999998888877653 344445556655543
No 254
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.71 E-value=6.1 Score=27.74 Aligned_cols=54 Identities=22% Similarity=0.364 Sum_probs=43.8
Q ss_pred HHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 045555 54 IDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKM 122 (175)
Q Consensus 54 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 122 (175)
+....+.|+++++++-..+-++.. +.|...-..+++.+|-.|+|+.|.+=++..
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~---------------P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS---------------PKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC---------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC---------------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 346778999999999988888865 345666678999999999999998766665
No 255
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=82.64 E-value=6.3 Score=24.14 Aligned_cols=61 Identities=18% Similarity=0.323 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhcCCC---hhhHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCC
Q 045555 100 IALIDMYCKCGDVEKAQRVFWKMLRKD---KFTWTAMIVGLAISGH--GDTALDMFSQMLRASIRL 160 (175)
Q Consensus 100 ~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p 160 (175)
+.+++=|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+.+++..+...|+-+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 578999999999999999999998773 2345556666666542 456788888888777444
No 256
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=82.54 E-value=1.7 Score=25.30 Aligned_cols=39 Identities=18% Similarity=0.055 Sum_probs=31.4
Q ss_pred CChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHH
Q 045555 30 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALT 68 (175)
Q Consensus 30 ~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~ 68 (175)
...+.|..++..+..+....|..++.++...|+..-|..
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 467889999999988888889999999987777665543
No 257
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=81.99 E-value=3.5 Score=27.59 Aligned_cols=78 Identities=15% Similarity=0.133 Sum_probs=53.4
Q ss_pred hHHHHhhccCC--CcHH---HHHHHHHHHHhcCChhHHHHHhhcCCCC-----ChhHHHHHHHHHhccCChHHHHHHHHH
Q 045555 3 FALEIFGNMKN--KDVI---SWTTIVSGYINRGQVDIARQYFAQMPER-----DYVLWTAMIDGYLRVNRFREALTLFRE 72 (175)
Q Consensus 3 ~A~~~~~~m~~--~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~ 72 (175)
++.+.|...++ .|+. .|-..+..+ ..+....+.++|..|... -..-|......+-..|++.+|.++|+.
T Consensus 62 rc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 62 RCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp HHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555443 3433 344444443 244466889999988753 344588888888899999999999999
Q ss_pred hHhCCCCCC
Q 045555 73 MQTSNIRRD 81 (175)
Q Consensus 73 m~~~~~~p~ 81 (175)
-.+.+-.|-
T Consensus 141 GI~~~A~P~ 149 (202)
T 3esl_A 141 GAENNCRPY 149 (202)
T ss_dssp HHHTTCBSH
T ss_pred HHHcCCccH
Confidence 999887764
No 258
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=81.60 E-value=14 Score=27.44 Aligned_cols=131 Identities=15% Similarity=0.073 Sum_probs=81.6
Q ss_pred cHHHHHHHHHHHHhcCC-hhHHHHHhhcCCC---CChhHH------HHHHHHHhccCChHHHHHHHHHhHhCCCCCChHH
Q 045555 15 DVISWTTIVSGYINRGQ-VDIARQYFAQMPE---RDYVLW------TAMIDGYLRVNRFREALTLFREMQTSNIRRDEFT 84 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~---~~~~~~------~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 84 (175)
.......++..+....+ .+.-.++.....+ .+-.+| ..|...|...|++.+|..++.++.+.=-..|..+
T Consensus 57 ~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~ 136 (394)
T 3txn_A 57 AAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKN 136 (394)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTH
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccch
Confidence 45566777777776433 3333333333321 111223 2678889999999999999999988532223222
Q ss_pred HHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC------CChhh----HHHHHHHHH-hcCChhHHHHHHHHH
Q 045555 85 TVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR------KDKFT----WTAMIVGLA-ISGHGDTALDMFSQM 153 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~------~~~~~----~~~li~~~~-~~g~~~~a~~~~~~m 153 (175)
+ -..++-.-+..|...+++.++...+..... +++.. ...-...+. ..+++.+|...|-+.
T Consensus 137 ~---------llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 137 L---------LVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp H---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred h---------HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 2 245567788889999999999988877621 22221 122223344 678999998888775
Q ss_pred H
Q 045555 154 L 154 (175)
Q Consensus 154 ~ 154 (175)
.
T Consensus 208 f 208 (394)
T 3txn_A 208 F 208 (394)
T ss_dssp H
T ss_pred H
Confidence 4
No 259
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=78.89 E-value=7.3 Score=22.51 Aligned_cols=39 Identities=13% Similarity=0.103 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHhhcCCChhhHHHHHHHHHhcCChhHHHH
Q 045555 110 GDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALD 148 (175)
Q Consensus 110 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 148 (175)
.+.+.|.++++.+..++...|..++.++...|+..-|..
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 578999999999999999999999999987777665543
No 260
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=77.86 E-value=18 Score=26.49 Aligned_cols=64 Identities=17% Similarity=0.255 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcCCC---hhhHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCc
Q 045555 98 VGIALIDMYCKCGDVEKAQRVFWKMLRKD---KFTWTAMIVGLAISGH--GDTALDMFSQMLRASIRLD 161 (175)
Q Consensus 98 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~ 161 (175)
..+.+++=|...|+.++|.+.++++..|. ..+...+..++-+.++ -+...+++..+...|+-+.
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 35678888888899999999999987774 2344555555555433 3457777888877765443
No 261
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=77.47 E-value=12 Score=24.19 Aligned_cols=112 Identities=11% Similarity=0.086 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhcCCC-----CCh-------hHHHHHHHHHhccCChHHHHHHHHHhHhCC--CCCChH
Q 045555 18 SWTTIVSGYINRGQVDIARQYFAQMPE-----RDY-------VLWTAMIDGYLRVNRFREALTLFREMQTSN--IRRDEF 83 (175)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~ 83 (175)
++-.-+..+...|.++.|+-+.+.+.. |+. .++..+.+++...|++..|...|++.++.. +.-+..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 344556677788888888888877542 332 256778889999999999999999975432 111111
Q ss_pred HHHHh-hhc-------cCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--CChhh
Q 045555 84 TTVRI-LTT-------FNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR--KDKFT 129 (175)
Q Consensus 84 ~~~~l-~~~-------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~ 129 (175)
++..+ ... ...+..+-=-+-.+|.+.+++++|..+++.++. ++..+
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kv 157 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKI 157 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHH
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHH
Confidence 11000 000 112233333477888888888888888888743 34444
No 262
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.05 E-value=19 Score=27.14 Aligned_cols=96 Identities=9% Similarity=0.072 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhcCCC----C-C----hhHHHHHHHHHhccCChHHHHHHHHHhHhCC--CCCChHHHH
Q 045555 18 SWTTIVSGYINRGQVDIARQYFAQMPE----R-D----YVLWTAMIDGYLRVNRFREALTLFREMQTSN--IRRDEFTTV 86 (175)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~----~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~ 86 (175)
....|...|-..|++.+|..++..+.. . + +-.+..-+..|...+++..|..++++....- ..+++..
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l-- 216 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL-- 216 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH--
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH--
Confidence 345678888999999999999998752 1 1 2356777888999999999999999875321 1111110
Q ss_pred HhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 045555 87 RILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML 123 (175)
Q Consensus 87 ~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 123 (175)
-...+...+..+...+++.+|.+.|.+..
T Consensus 217 --------k~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 217 --------KLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp --------HHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 12345677778888899999888888773
No 263
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=75.07 E-value=13 Score=23.33 Aligned_cols=59 Identities=10% Similarity=0.017 Sum_probs=45.0
Q ss_pred CHHHHHHHHHhh----cCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHh
Q 045555 111 DVEKAQRVFWKM----LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLS 170 (175)
Q Consensus 111 ~~~~a~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 170 (175)
|.-+..+-++.+ ..|++.+..+-+++|-+-+++..|.++|+-.+.+ ..+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 444555555555 4589999999999999999999999999998875 3444556777665
No 264
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=74.32 E-value=37 Score=28.36 Aligned_cols=99 Identities=11% Similarity=-0.011 Sum_probs=60.9
Q ss_pred HHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCCh------HHHHHhhhccCc-
Q 045555 22 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDE------FTTVRILTTFNN- 94 (175)
Q Consensus 22 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~l~~~~~~- 94 (175)
++..+...|..+.|.++...... +...-..+..+|...|++++|...|++.- .|+..+. .....++...++
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~~~~~~ll~~~e~~ 893 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEKYHHQ 893 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGGHHHHHHHHHTTTC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccchhhhhhccCccccc
Confidence 66777888999999887777776 44334568888999999999999998864 2333221 111122221111
Q ss_pred --chhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 045555 95 --DIFVGIALIDMYCKCGDVEKAQRVFWKM 122 (175)
Q Consensus 95 --~~~~~~~li~~~~~~~~~~~a~~~~~~~ 122 (175)
....|..++..+.+.+.++.+.++-+..
T Consensus 894 ~~~~~YY~hV~~LFE~~~a~~~vi~fA~lA 923 (950)
T 4gq2_M 894 NLLSCYYLHLSKKLFEESAYIDALEFSLLA 923 (950)
T ss_dssp SHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1235556666666666666555544443
No 265
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=74.28 E-value=15 Score=23.69 Aligned_cols=52 Identities=8% Similarity=0.028 Sum_probs=32.5
Q ss_pred CCCcHHHHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCCh
Q 045555 12 KNKDVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF 63 (175)
Q Consensus 12 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~ 63 (175)
..++...-...+..+++.|..+....+...+..++..+-...+.++.+.++.
T Consensus 55 ~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~ 106 (201)
T 3ltj_A 55 KDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDE 106 (201)
T ss_dssp TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG
T ss_pred cCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH
Confidence 3456666666666777777666666666666666666555566666666554
No 266
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=73.60 E-value=12 Score=22.19 Aligned_cols=64 Identities=11% Similarity=0.044 Sum_probs=47.3
Q ss_pred HHhcC-CHHHHHHHHHhh----cCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHh
Q 045555 106 YCKCG-DVEKAQRVFWKM----LRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLS 170 (175)
Q Consensus 106 ~~~~~-~~~~a~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 170 (175)
+.+.. +.-+..+-++.+ ..|++.+..+.+++|.|-+++..|.++|+-.+.+- .+...+|..+++
T Consensus 19 F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 19 FNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 33444 455566666665 45899999999999999999999999999988752 333556777665
No 267
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=71.98 E-value=15 Score=22.77 Aligned_cols=66 Identities=11% Similarity=0.020 Sum_probs=44.4
Q ss_pred CChhHHHHHHHHHhccCC---hHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 045555 45 RDYVLWTAMIDGYLRVNR---FREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWK 121 (175)
Q Consensus 45 ~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 121 (175)
++..+--.+..++++..+ ...++.+++++.+.+ |.. .....=.|.-++.+.|++++|.+..+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~------------~Rd~LYyLAvg~yklgdY~~Ar~y~d~ 103 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESR------------RRECLYYLTIGCYKLGEYSMAKRYVDT 103 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGG------------HHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cch------------hHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 444444445556666654 668899999998865 210 011112577889999999999999999
Q ss_pred hcC
Q 045555 122 MLR 124 (175)
Q Consensus 122 ~~~ 124 (175)
+.+
T Consensus 104 lL~ 106 (134)
T 3o48_A 104 LFE 106 (134)
T ss_dssp HHT
T ss_pred HHh
Confidence 844
No 268
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=70.89 E-value=11 Score=21.42 Aligned_cols=39 Identities=13% Similarity=0.066 Sum_probs=29.0
Q ss_pred hcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHH
Q 045555 28 NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 66 (175)
Q Consensus 28 ~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a 66 (175)
.....++|..+++.+.......|..++.++.+.+...-|
T Consensus 48 ~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 48 EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 356677788888888888888888888888777764443
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=69.37 E-value=22 Score=23.71 Aligned_cols=75 Identities=13% Similarity=0.124 Sum_probs=52.9
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChh
Q 045555 49 LWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKF 128 (175)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 128 (175)
.|-..+..+ ..+...+..++|..|...||.-.... .|......+...|++.+|.++|+.-++....
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~Al-------------fYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSL-------------FYEEFSKLLENAQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHH-------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHH-------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 344444433 24457799999999999998554333 4678888999999999999999987665544
Q ss_pred hHHHHHHHH
Q 045555 129 TWTAMIVGL 137 (175)
Q Consensus 129 ~~~~li~~~ 137 (175)
-..-|...+
T Consensus 148 P~~rL~~~~ 156 (202)
T 3esl_A 148 PYNRLLRSL 156 (202)
T ss_dssp SHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 444444333
No 270
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=68.48 E-value=7.4 Score=25.06 Aligned_cols=49 Identities=12% Similarity=0.183 Sum_probs=38.5
Q ss_pred hHHHHHhhcCCCC-----ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCC
Q 045555 33 DIARQYFAQMPER-----DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81 (175)
Q Consensus 33 ~~a~~~~~~m~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 81 (175)
+.+.++|..|... -..-|......+-..|++.+|.++|..-++.+..|-
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 4467778777654 334577777888899999999999999999987775
No 271
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=68.43 E-value=19 Score=22.59 Aligned_cols=65 Identities=14% Similarity=0.079 Sum_probs=45.8
Q ss_pred CChhHHHHHHHHHhccCC---hHHHHHHHHHhHhCCCC-CChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHH
Q 045555 45 RDYVLWTAMIDGYLRVNR---FREALTLFREMQTSNIR-RDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120 (175)
Q Consensus 45 ~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 120 (175)
++..+--.+..++++..+ ..+++.+++++.+.+.. .-...| .|.-++.|.|++++|.+..+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLY---------------yLAvg~ykl~~Y~~Ar~y~d 101 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLY---------------YLTIGCYKLGEYSMAKRYVD 101 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHH---------------HHHHHHHTTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHH---------------HHHHHHHHhhhHHHHHHHHH
Confidence 455555555667777765 56889999999886421 112222 57789999999999999999
Q ss_pred hhcC
Q 045555 121 KMLR 124 (175)
Q Consensus 121 ~~~~ 124 (175)
.+.+
T Consensus 102 ~lL~ 105 (144)
T 1y8m_A 102 TLFE 105 (144)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9843
No 272
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=67.84 E-value=7.8 Score=31.47 Aligned_cols=53 Identities=17% Similarity=0.276 Sum_probs=45.4
Q ss_pred HHHHHHhcCChhHHHHHhhcCCC--C-ChhHHHHHHHHHhccCChHHHHHHHHHhH
Q 045555 22 IVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQ 74 (175)
Q Consensus 22 li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (175)
-...+.+.|+++.|+.+-++... | +-.+|..|..+|.+.|+++.|+-.++-+.
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34557788999999999998763 5 56799999999999999999999999883
No 273
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=67.81 E-value=18 Score=22.09 Aligned_cols=60 Identities=13% Similarity=0.023 Sum_probs=45.6
Q ss_pred HHHHHHHhcCCHHH---HHHHHHhhcCCC-h----hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcH
Q 045555 101 ALIDMYCKCGDVEK---AQRVFWKMLRKD-K----FTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDE 162 (175)
Q Consensus 101 ~li~~~~~~~~~~~---a~~~~~~~~~~~-~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 162 (175)
.+..++.+.+...+ +..++.+..+.+ . ...-.+.-++.+.|++++|.+.++.+++. .|+.
T Consensus 40 ~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~--eP~n 107 (126)
T 1nzn_A 40 EYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--EPQN 107 (126)
T ss_dssp HHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCC
Confidence 46777888887766 888888886654 2 23445667899999999999999999974 5643
No 274
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.53 E-value=41 Score=26.07 Aligned_cols=105 Identities=13% Similarity=0.103 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHhhcCCCCCh-------hHHH-HHHHHHhccCChHHHHHHHHHhHhCCCCCCh-----
Q 045555 16 VISWTTIVSGYINRGQVDIARQYFAQMPERDY-------VLWT-AMIDGYLRVNRFREALTLFREMQTSNIRRDE----- 82 (175)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-------~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----- 82 (175)
...+|.+++.|...+.++.|..+.++..-|.. .+|. -+...+.-.+++.+|.+.+.+..+.-.....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr 310 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFL 310 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHH
Confidence 56799999999999999999999998765521 1222 2344566778999999998887764322111
Q ss_pred ---HHHHH---hhhccCcch------------hHHHHHHHHHHhcCCHHHHHHHHHh
Q 045555 83 ---FTTVR---ILTTFNNDI------------FVGIALIDMYCKCGDVEKAQRVFWK 121 (175)
Q Consensus 83 ---~~~~~---l~~~~~~~~------------~~~~~li~~~~~~~~~~~a~~~~~~ 121 (175)
..|.. ++.|-.|+. .-|..|..++ +.|+++.-..+...
T Consensus 311 ~~a~K~lI~V~LLlG~iP~r~lf~q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~ 366 (523)
T 4b4t_S 311 QQSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITK 366 (523)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHTTTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred HHHHHHHHhHHhhcCCCCChHHhhchhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 11111 222444432 2355666665 67887776666554
No 275
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.47 E-value=9.4 Score=28.55 Aligned_cols=56 Identities=16% Similarity=0.089 Sum_probs=47.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhcCC------ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 100 IALIDMYCKCGDVEKAQRVFWKMLRK------DKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 100 ~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
..+.+-|.+.|++++|.+.+.++... -...+-..|+.+...+++..+...+.+...
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 46899999999999999999999542 345777888899999999999999988754
No 276
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=66.21 E-value=24 Score=22.80 Aligned_cols=101 Identities=7% Similarity=-0.034 Sum_probs=66.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHhCC-CCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhc----
Q 045555 49 LWTAMIDGYLRVNRFREALTLFREMQTSN-IRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKML---- 123 (175)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~---- 123 (175)
.+-.-+..+...|.++.|.-+.+.+.... ..|+..+- .--..+...+.+++...|.+..|...|+...
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp-------~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k 94 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSP-------PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKK 94 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccH-------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 34455777888899999988888765531 22221000 0001244578999999999999999999951
Q ss_pred ----CCCh--------------------hhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 124 ----RKDK--------------------FTWTAMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 124 ----~~~~--------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
.++. ..---+-.+|.+.|++++|..+++.+..+
T Consensus 95 ~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 95 ALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp CC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 1111 22234677888999999999998776444
No 277
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=66.20 E-value=35 Score=24.77 Aligned_cols=102 Identities=13% Similarity=0.112 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhcCC-------CCChh--HHHHHHHHHhccCC--hHHHHHHHHHhHhCCCCCChHHHH
Q 045555 18 SWTTIVSGYINRGQVDIARQYFAQMP-------ERDYV--LWTAMIDGYLRVNR--FREALTLFREMQTSNIRRDEFTTV 86 (175)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~-------~~~~~--~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~ 86 (175)
.|-++..=|.+.+++++|.+++..-. +.+.. .-..++..|.+.+- -++...-+.++.+. +.|+.....
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~-~~~~~p~r~ 115 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL-FQPGEPVRK 115 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT-SCTTCHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-CCCCCcHHH
Confidence 35556666777888888888655321 11111 12233455555442 12222222233222 333333333
Q ss_pred Hhhh-----------ccCcchhHHHHHHHHHHhcCCHHHHHHHHH
Q 045555 87 RILT-----------TFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120 (175)
Q Consensus 87 ~l~~-----------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 120 (175)
.+++ ...-|......+...|.+.+++.+|+..|-
T Consensus 116 ~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 116 RFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp HHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 3333 133466778889999999999999988874
No 278
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=65.95 E-value=22 Score=22.41 Aligned_cols=64 Identities=13% Similarity=0.235 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhcCCCCC---hhHHHHHHHHHhccCC--hHHHHHHHHHhHhCCCCCC
Q 045555 18 SWTTIVSGYINRGQVDIARQYFAQMPERD---YVLWTAMIDGYLRVNR--FREALTLFREMQTSNIRRD 81 (175)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~ 81 (175)
..+.++.=|...|+.++|...++++..|. ..+...+..++-+.++ .+.+..++..+...|+-+.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 45778889999999999999999998773 3455666666766432 5678888888888775433
No 279
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=64.53 E-value=11 Score=19.60 Aligned_cols=47 Identities=17% Similarity=0.199 Sum_probs=30.5
Q ss_pred HHHHHHHHhhcC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc
Q 045555 113 EKAQRVFWKMLR-KDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLD 161 (175)
Q Consensus 113 ~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 161 (175)
++..+.+.+|.. -+..+-..++.++ .|+++.|.+.+-+|...+..|+
T Consensus 10 ee~l~~L~emFP~ld~~~I~~vL~a~--~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMDQEVIRSVLEAQ--RGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHTTT--TTCHHHHHHHHHHSSCCCCSCC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHc--CCCHHHHHHHHHcCcCCCCCCC
Confidence 555666666642 2444444444443 6788889988888887777776
No 280
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=62.62 E-value=43 Score=24.54 Aligned_cols=60 Identities=17% Similarity=0.235 Sum_probs=41.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhcCCC----hhhHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCC
Q 045555 100 IALIDMYCKCGDVEKAQRVFWKMLRKD----KFTWTAMIVGLAISG-HGDTALDMFSQMLRASIR 159 (175)
Q Consensus 100 ~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~ 159 (175)
..+|.=|...|++++|.+.++++..|+ ..++..+..++-+.. .-+.+..++..+..+|+-
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~l 80 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIA 80 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCC
Confidence 579999999999999999999998875 234444445554432 224456677777776643
No 281
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=61.20 E-value=9.9 Score=25.83 Aligned_cols=49 Identities=8% Similarity=0.179 Sum_probs=39.1
Q ss_pred hHHHHHhhcCCCC-----ChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCC
Q 045555 33 DIARQYFAQMPER-----DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81 (175)
Q Consensus 33 ~~a~~~~~~m~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 81 (175)
+.+.++|..|... -..-|......+-..|++.+|.++|..-++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 5677888877654 344577888888899999999999999999887664
No 282
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=59.87 E-value=13 Score=26.92 Aligned_cols=61 Identities=10% Similarity=0.113 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhcCCCCC---hhHHHHHHHHHhccC-ChHHHHHHHHHhHhCCC
Q 045555 18 SWTTIVSGYINRGQVDIARQYFAQMPERD---YVLWTAMIDGYLRVN-RFREALTLFREMQTSNI 78 (175)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~ 78 (175)
....++.=|...|+.++|...++++..|. ..+...+..++-+.. ..+.+..++..+.+.|+
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 35678888889999999999999998874 233444444444432 34566777777777664
No 283
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=58.38 E-value=41 Score=22.90 Aligned_cols=72 Identities=15% Similarity=0.078 Sum_probs=38.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHhh
Q 045555 95 DIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVLSA 171 (175)
Q Consensus 95 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 171 (175)
+..+-...+.++.+.|+.+....+...+..++ +-...+.++.+.|+ +.+...+.++.+. .++.......+++
T Consensus 205 ~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~~--~~~~~~~~~~~~~ 276 (280)
T 1oyz_A 205 NEEVRIEAIIGLSYRKDKRVLSVLCDELKKNT--VYDDIIEAAGELGD-KTLLPVLDTMLYK--FDDNEIITSAIDK 276 (280)
T ss_dssp CHHHHHHHHHHHHHTTCGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-GGGHHHHHHHHTT--SSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-hhhhHHHHHHHhc--CCCcHHHHHHHHH
Confidence 34444556666666666554444544444444 33445666777776 4566666666643 2344444444443
No 284
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=57.90 E-value=32 Score=21.63 Aligned_cols=39 Identities=8% Similarity=0.119 Sum_probs=17.9
Q ss_pred HHHHHHHHhcCChhHHHHHhhcCCCC-ChhHHHHHHHHHh
Q 045555 20 TTIVSGYINRGQVDIARQYFAQMPER-DYVLWTAMIDGYL 58 (175)
Q Consensus 20 ~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~li~~~~ 58 (175)
+.+...+...|-.++...-+..|... +......++..|.
T Consensus 11 ~~~~~~l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~Fl 50 (153)
T 3us6_A 11 VDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFF 50 (153)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHHH
T ss_pred HHHHHhcccccchHHHHHHHHHhhcCCCHHHHHHHHHHHH
Confidence 34444455555555444444444432 3333444454443
No 285
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=57.82 E-value=49 Score=23.62 Aligned_cols=62 Identities=19% Similarity=0.274 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcCCCh---hhHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCC
Q 045555 99 GIALIDMYCKCGDVEKAQRVFWKMLRKDK---FTWTAMIVGLAISGH--GDTALDMFSQMLRASIRL 160 (175)
Q Consensus 99 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p 160 (175)
.+.+++=|...|+.++|.+.++++..|.. .+...+..++-+.++ .+...+++..+.+.|+-+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls 235 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT 235 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCC
Confidence 45788888889999999999999977732 344555555555432 345677888887766443
No 286
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=57.55 E-value=51 Score=23.75 Aligned_cols=57 Identities=9% Similarity=-0.008 Sum_probs=26.4
Q ss_pred chHHHHhhccCCCcH---HHHHHHHHHHHhc-CChhHHHHHhhcCCCCChhHHHHHHHHHh
Q 045555 2 GFALEIFGNMKNKDV---ISWTTIVSGYINR-GQVDIARQYFAQMPERDYVLWTAMIDGYL 58 (175)
Q Consensus 2 ~~A~~~~~~m~~~~~---~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~li~~~~ 58 (175)
+||.+-++++..|.. .+...+..++-+. ..-+.+..++..+.+....+-..+..|+.
T Consensus 28 ~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~ 88 (339)
T 1ug3_A 28 KEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLY 88 (339)
T ss_dssp HHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 577788888876632 2222222232221 11233444455454444444444444443
No 287
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=57.50 E-value=50 Score=23.66 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=23.4
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHH
Q 045555 94 NDIFVGIALIDMYCKCGDVEKAQRVFW 120 (175)
Q Consensus 94 ~~~~~~~~li~~~~~~~~~~~a~~~~~ 120 (175)
.++.....+...|.+.|++.+|+..|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 467788899999999999999999774
No 288
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=57.10 E-value=30 Score=21.03 Aligned_cols=64 Identities=13% Similarity=0.235 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhcCCCCC---hhHHHHHHHHHhccCC--hHHHHHHHHHhHhCCCCCC
Q 045555 18 SWTTIVSGYINRGQVDIARQYFAQMPERD---YVLWTAMIDGYLRVNR--FREALTLFREMQTSNIRRD 81 (175)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~ 81 (175)
..+.++.=|...|+.++|...++++..|. ..+...+..++-+.++ .+.+..++..+...|+-+.
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 45678888999999999999999998773 3455666666766542 5678888888888775433
No 289
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=54.97 E-value=42 Score=22.05 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=12.3
Q ss_pred HHHHHHHhcCCHH---HHHHHHHhhc
Q 045555 101 ALIDMYCKCGDVE---KAQRVFWKML 123 (175)
Q Consensus 101 ~li~~~~~~~~~~---~a~~~~~~~~ 123 (175)
..+.-+.+.|+.+ +|-++++.|.
T Consensus 36 a~L~eLirs~~PeDL~~AN~LiK~m~ 61 (186)
T 1oxz_A 36 KMLARLLKSSHPEDLRAANKLIKEMV 61 (186)
T ss_dssp HHHHHHHSCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHHh
Confidence 4455555555544 4555555554
No 290
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=53.60 E-value=59 Score=23.29 Aligned_cols=25 Identities=16% Similarity=0.062 Sum_probs=15.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHH
Q 045555 126 DKFTWTAMIVGLAISGHGDTALDMF 150 (175)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~a~~~~ 150 (175)
+......+...|.+.|++.+|..-|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 4555566666677777776666544
No 291
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=52.95 E-value=67 Score=25.44 Aligned_cols=118 Identities=11% Similarity=0.110 Sum_probs=0.0
Q ss_pred chHHHHhhccCC-------CcHHHHHHHHHHHHhcCChhHHHHHhhc--CCCCChhHHHHHHHHHhccCChHHHHHHHHH
Q 045555 2 GFALEIFGNMKN-------KDVISWTTIVSGYINRGQVDIARQYFAQ--MPERDYVLWTAMIDGYLRVNRFREALTLFRE 72 (175)
Q Consensus 2 ~~A~~~~~~m~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~--m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 72 (175)
+.|..++....+ .....+..+.......+...++...+.. ....+.....-.+....+.|+++.|...|..
T Consensus 231 ~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr~~d~~~a~~~~~~ 310 (618)
T 1qsa_A 231 ENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLAR 310 (618)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_pred hHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHHH
Q 045555 73 MQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVG 136 (175)
Q Consensus 73 m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~ 136 (175)
|......-+...| -+..++.+.|+.++|..+|.....+ .+|-.++.+
T Consensus 311 l~~~~~~~~r~~Y---------------W~~ra~~~~g~~~~a~~~~~~~a~~--~~fYg~lAa 357 (618)
T 1qsa_A 311 LPMEAKEKDEWRY---------------WQADLLLERGREAEAKEILHQLMQQ--RGFYPMVAA 357 (618)
T ss_dssp SCTTGGGSHHHHH---------------HHHHHHHHTTCHHHHHHHHHHHHTS--CSHHHHHHH
T ss_pred ccccccccHhHHH---------------HHHHHHHHcCCHHHHHHHHHHHhcC--CChHHHHHH
No 292
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=52.32 E-value=18 Score=23.10 Aligned_cols=53 Identities=13% Similarity=0.088 Sum_probs=40.3
Q ss_pred cCChhHHHHHhhcCCC---CChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCC
Q 045555 29 RGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD 81 (175)
Q Consensus 29 ~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 81 (175)
.+++++|+++|+.+.+ .-...|-....-=.+.|++..|..++......+.+|.
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 4789999999998753 3444555555556788999999999999998775554
No 293
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=50.33 E-value=13 Score=20.83 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHH-CCCCCcHHHHHHHH
Q 045555 143 GDTALDMFSQMLR-ASIRLDEVTYVGVL 169 (175)
Q Consensus 143 ~~~a~~~~~~m~~-~g~~p~~~t~~~ll 169 (175)
.++|...|.+|+. .||.|+. ||...+
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~~-tWe~~~ 42 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAFS-TWEKEL 42 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSSS-CHHHHH
T ss_pred HHHHHHHHHHHHHHcCcCCCC-CHHHHH
Confidence 4677888888776 4777764 444333
No 294
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=48.66 E-value=60 Score=22.01 Aligned_cols=59 Identities=17% Similarity=0.165 Sum_probs=41.4
Q ss_pred HHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHH
Q 045555 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIV 135 (175)
Q Consensus 64 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~ 135 (175)
++...+|..|...||.-.... .|......+...|++.+|.++|+.-++....-..-|..
T Consensus 131 ~~p~~if~~L~~~~IG~~~Al-------------fYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~ 189 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSI-------------FYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQ 189 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHH-------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHH-------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHH
Confidence 577789999999887544333 36778888888999999999988765544333333333
No 295
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=48.54 E-value=14 Score=20.11 Aligned_cols=26 Identities=12% Similarity=0.355 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHH-CCCCCcHHHHHHHH
Q 045555 143 GDTALDMFSQMLR-ASIRLDEVTYVGVL 169 (175)
Q Consensus 143 ~~~a~~~~~~m~~-~g~~p~~~t~~~ll 169 (175)
.++|.+.|.+|++ .++.|+. ||...+
T Consensus 14 ~eea~~~F~~LL~e~~V~~~~-tWe~~~ 40 (71)
T 1uzc_A 14 KEEAKQAFKELLKEKRVPSNA-SWEQAM 40 (71)
T ss_dssp HHHHHHHHHHHHHHTTCCTTC-CHHHHH
T ss_pred HHHHHHHHHHHHHHcCcCCCC-CHHHHH
Confidence 4667777777765 4666654 343333
No 296
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=47.49 E-value=58 Score=21.47 Aligned_cols=93 Identities=12% Similarity=0.176 Sum_probs=60.3
Q ss_pred hcCChhHHHHHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCC--hHHH-HHhhhccCcchhHHHHHHH
Q 045555 28 NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRD--EFTT-VRILTTFNNDIFVGIALID 104 (175)
Q Consensus 28 ~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~-~~l~~~~~~~~~~~~~li~ 104 (175)
-.|.+..++-++....--+..-|-.| +|-+.+++..|..-++.+....+..| .-.- ..++......-..++.+..
T Consensus 45 yngEY~R~Lf~L~~lNT~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~ 122 (242)
T 3kae_A 45 LNGEYTRALFHLHKLNTCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGD 122 (242)
T ss_dssp HTTCHHHHHHHHHTCCBHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHH
T ss_pred hcchHhHHHHHHHhcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHH
Confidence 45666666666555443333334443 57788999999999999997766533 2211 1111122222457788889
Q ss_pred HHHhcCCHHHHHHHHHhh
Q 045555 105 MYCKCGDVEKAQRVFWKM 122 (175)
Q Consensus 105 ~~~~~~~~~~a~~~~~~~ 122 (175)
.+...|+-++|...|..-
T Consensus 123 lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 123 LCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCHHHhhhHhhhh
Confidence 999999999999988764
No 297
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=46.82 E-value=55 Score=20.99 Aligned_cols=61 Identities=13% Similarity=0.154 Sum_probs=42.7
Q ss_pred HHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCChhhHHHHHHHH
Q 045555 64 REALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLRKDKFTWTAMIVGL 137 (175)
Q Consensus 64 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 137 (175)
++..++|..|...||.-.... .|......+...|++.+|.++|..-+.....-...|-..+
T Consensus 77 ~~p~~if~~L~~~~IG~~~Al-------------fY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~~ 137 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQ-------------FYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQH 137 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHH-------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHH-------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 347788999999988554333 3677888888899999999999887655444444444333
No 298
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=46.65 E-value=38 Score=19.07 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=32.8
Q ss_pred hcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhcCChhHH
Q 045555 108 KCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTA 146 (175)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 146 (175)
.....+.|.++++.+..++...|..++.++...|...-|
T Consensus 48 ~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 48 EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 367889999999999999999999999999887764443
No 299
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=46.57 E-value=42 Score=21.45 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=24.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhcCCC
Q 045555 100 IALIDMYCKCGDVEKAQRVFWKMLRKD 126 (175)
Q Consensus 100 ~~li~~~~~~~~~~~a~~~~~~~~~~~ 126 (175)
..+++=|...++.++|...++++..|+
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL~~p~ 40 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDLNLGE 40 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCSG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCcc
Confidence 578999999999999999999998774
No 300
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=46.53 E-value=66 Score=21.84 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=36.3
Q ss_pred hHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 045555 63 FREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWKMLR 124 (175)
Q Consensus 63 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 124 (175)
++.|+.+++.+.+....++...-. + -..+--..+-.|.+.|.+++|.++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~-i------~~llk~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVES-S------RKLVKEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHH-H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHH-H------HHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 688999999998865322222110 0 001113567788999999999999999854
No 301
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=42.43 E-value=37 Score=26.58 Aligned_cols=86 Identities=9% Similarity=0.025 Sum_probs=40.7
Q ss_pred cCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcc-hhHHHHHHHHHHhcCCHHHHHHHHHhhcCC---ChhhHHHHHH
Q 045555 60 VNRFREALTLFREMQTSNIRRDEFTTVRILTTFNND-IFVGIALIDMYCKCGDVEKAQRVFWKMLRK---DKFTWTAMIV 135 (175)
Q Consensus 60 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~ 135 (175)
..-|+-|+.++.............+...++..++.+ ..--.-++..|.+.|..+.|.++++.+-.+ +...| .-+.
T Consensus 479 ~sLW~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~~g~~g-eAL~ 557 (570)
T 3f3f_C 479 KELWPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLSAHNII-ESIA 557 (570)
T ss_dssp TTTHHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------
T ss_pred CcchhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHCccHH-HHHH
Confidence 345888888888622211112333444444444433 223456889999999999999999988554 33455 5566
Q ss_pred HHHhcCChhHH
Q 045555 136 GLAISGHGDTA 146 (175)
Q Consensus 136 ~~~~~g~~~~a 146 (175)
.|+|+|++++.
T Consensus 558 ~f~rA~~~~~V 568 (570)
T 3f3f_C 558 NFSRAGKYELV 568 (570)
T ss_dssp -----------
T ss_pred HHHHcCChhhc
Confidence 77888887664
No 302
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=42.31 E-value=44 Score=21.30 Aligned_cols=10 Identities=10% Similarity=0.228 Sum_probs=5.6
Q ss_pred HHHHhHhCCC
Q 045555 69 LFREMQTSNI 78 (175)
Q Consensus 69 ~~~~m~~~~~ 78 (175)
.+.+++++|-
T Consensus 21 ~L~~Lirs~~ 30 (158)
T 1naf_A 21 MLARLLKSSH 30 (158)
T ss_dssp HHHHHHSSCS
T ss_pred HHHHHHhcCC
Confidence 4556666653
No 303
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=41.64 E-value=19 Score=18.61 Aligned_cols=27 Identities=15% Similarity=0.068 Sum_probs=17.8
Q ss_pred HHHhcC-ChhHHHHHHHHHHHCCCCCcHH
Q 045555 136 GLAISG-HGDTALDMFSQMLRASIRLDEV 163 (175)
Q Consensus 136 ~~~~~g-~~~~a~~~~~~m~~~g~~p~~~ 163 (175)
++...| +++.|...|.+. +..++|+..
T Consensus 27 cL~~n~Wd~~~A~~~F~~~-~~~IP~eAF 54 (57)
T 2jp7_A 27 LAEQSNWNYEVAIKGFQSS-MNGIPREAF 54 (57)
T ss_dssp HHHHTTTCSHHHHHHHHHS-TTTSCHHHH
T ss_pred HHHHcCCCHHHHHHHHHHH-HcCCCHHHh
Confidence 333444 889999999886 345666553
No 304
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=40.83 E-value=38 Score=17.50 Aligned_cols=23 Identities=9% Similarity=0.008 Sum_probs=18.0
Q ss_pred cCChhHHHHHHHHHHHCC-CCCcH
Q 045555 140 SGHGDTALDMFSQMLRAS-IRLDE 162 (175)
Q Consensus 140 ~g~~~~a~~~~~~m~~~g-~~p~~ 162 (175)
.-+++.|...|.++..+| ++|+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 449999999999998765 66654
No 305
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=40.57 E-value=17 Score=18.92 Aligned_cols=28 Identities=25% Similarity=0.227 Sum_probs=19.2
Q ss_pred hHHHHHHHHHhHhCCCCCChHHHHHhhh
Q 045555 63 FREALTLFREMQTSNIRRDEFTTVRILT 90 (175)
Q Consensus 63 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 90 (175)
.++|.+.|.+|++..-.++..||..+++
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr 29 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIIS 29 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHH
Confidence 4688999999988765555556644443
No 306
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=40.04 E-value=70 Score=21.39 Aligned_cols=45 Identities=16% Similarity=0.230 Sum_probs=31.3
Q ss_pred hhHHHHHhhcCCCC-Ch-h------HHHHHHHHHhccCChHHHHHHHHHhHhC
Q 045555 32 VDIARQYFAQMPER-DY-V------LWTAMIDGYLRVNRFREALTLFREMQTS 76 (175)
Q Consensus 32 ~~~a~~~~~~m~~~-~~-~------~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (175)
.+-|+.+|+.+.+. |. + .--..+..|.+.|.+++|.++++.....
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 45688889888852 21 1 1234456699999999999999996554
No 307
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=39.49 E-value=21 Score=21.54 Aligned_cols=49 Identities=8% Similarity=0.112 Sum_probs=31.7
Q ss_pred cCCHHHHHHHHHhhcC-----CChhhHHHHHHHHH---hcCChhHHHHHHHHHHHCCCCC
Q 045555 109 CGDVEKAQRVFWKMLR-----KDKFTWTAMIVGLA---ISGHGDTALDMFSQMLRASIRL 160 (175)
Q Consensus 109 ~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~---~~g~~~~a~~~~~~m~~~g~~p 160 (175)
...+++|.+++..|.+ ..+..||..+..+- ..++.. +.+..+..+++.|
T Consensus 40 ~~~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~~~~~l~---~FW~~iv~~~lgL 96 (120)
T 1q2z_A 40 TPYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQLN---HFWEIVVQDGITL 96 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTSTT---HHHHHHHHTTCCS
T ss_pred cchHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhHH---HHHHHHHHCCcCC
Confidence 3467788888888854 37788998887764 444543 3444566666654
No 308
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=37.91 E-value=1.8e+02 Score=24.38 Aligned_cols=72 Identities=13% Similarity=0.122 Sum_probs=49.4
Q ss_pred HHHHhhccCCCcHHHHHHHHHHHHhcCChhHHHHHhhcCCCC--------------------------ChhHHHHHHHHH
Q 045555 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQMPER--------------------------DYVLWTAMIDGY 57 (175)
Q Consensus 4 A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------------------------~~~~~~~li~~~ 57 (175)
|.++....+. |+..--.+..+|...|++++|.++|++.... ...-|..++.-+
T Consensus 829 a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LF 907 (950)
T 4gq2_M 829 CMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKL 907 (950)
T ss_dssp HHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHH
T ss_pred HHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHH
Confidence 4555555554 4444456788899999999999999987631 011366777777
Q ss_pred hccCChHHHHHHHHHhHhC
Q 045555 58 LRVNRFREALTLFREMQTS 76 (175)
Q Consensus 58 ~~~~~~~~a~~~~~~m~~~ 76 (175)
-+.+.++-++++-+...+.
T Consensus 908 E~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 908 FEESAYIDALEFSLLADAS 926 (950)
T ss_dssp HHTTCHHHHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHHHhh
Confidence 7777777777777766653
No 309
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=37.74 E-value=81 Score=23.96 Aligned_cols=68 Identities=15% Similarity=0.080 Sum_probs=43.2
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHH-HHHHHHHhcCCHHHHHHHHHhh
Q 045555 49 LWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGI-ALIDMYCKCGDVEKAQRVFWKM 122 (175)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~~ 122 (175)
..|.|+..|.+.++.+.+..+++.+...+..|+...| ......+|. .+...+...+++.+|.+.+...
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~------p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A 246 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEY------QLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEA 246 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGS------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhC------CccceEeeeHHHHHHHHHHccHHHHHHHHHHH
Confidence 5788899999999999999999999888765543333 111122222 3444445566666665554443
No 310
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=36.56 E-value=60 Score=21.28 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=13.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 045555 131 TAMIVGLAISGHGDTALDMFSQML 154 (175)
Q Consensus 131 ~~li~~~~~~g~~~~a~~~~~~m~ 154 (175)
-.+|.|+.+.|++++|.+++.++.
T Consensus 36 LqvI~GLlql~~ydea~~yI~~~~ 59 (192)
T 1ixm_A 36 LQLIKGNLSLQKYDRVFEMIEEMV 59 (192)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345566666666666666555543
No 311
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=36.24 E-value=1.2e+02 Score=21.96 Aligned_cols=25 Identities=12% Similarity=-0.076 Sum_probs=15.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHH
Q 045555 126 DKFTWTAMIVGLAISGHGDTALDMF 150 (175)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~a~~~~ 150 (175)
|...-..+...|.+.+++.+|..-|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4445555666677777776665554
No 312
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=36.04 E-value=1.3e+02 Score=22.07 Aligned_cols=64 Identities=13% Similarity=0.235 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhcCCCCC---hhHHHHHHHHHhccCC--hHHHHHHHHHhHhCCCCCC
Q 045555 18 SWTTIVSGYINRGQVDIARQYFAQMPERD---YVLWTAMIDGYLRVNR--FREALTLFREMQTSNIRRD 81 (175)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~ 81 (175)
..+.++.=|...|+.++|.+.++++..|. ..+...+..++-+.++ .+....++..+...|+-+.
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 35778888888899999999999988763 3345566666665433 4667888888888775443
No 313
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=35.86 E-value=1.2e+02 Score=21.64 Aligned_cols=64 Identities=14% Similarity=0.244 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhcCCCCC---hhHHHHHHHHHhccCC--hHHHHHHHHHhHhCCCCCC
Q 045555 18 SWTTIVSGYINRGQVDIARQYFAQMPERD---YVLWTAMIDGYLRVNR--FREALTLFREMQTSNIRRD 81 (175)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~ 81 (175)
..+.++.=|...|+.++|...++++..|. ..+...+..++-+.++ .+.+..++.++.+.|+-+.
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 35678888888899999999999998773 3345666666666533 5667788888887775433
No 314
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens}
Probab=35.77 E-value=21 Score=23.98 Aligned_cols=53 Identities=2% Similarity=-0.155 Sum_probs=29.0
Q ss_pred HHhhccCCC--cHHHHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHh
Q 045555 6 EIFGNMKNK--DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYL 58 (175)
Q Consensus 6 ~~~~~m~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~ 58 (175)
.+|+++++| ....|..++.+.......++...++..+..++..+...|+..+.
T Consensus 92 ~flReLPePLi~~~ly~~~i~~~~~~~~~~~~~~l~~~LP~~n~~~L~~L~~~L~ 146 (214)
T 2xs6_A 92 SFLLALPAPLVTPEASAEARRALREAAGPVGPALEPPTLPLHRALTLRFLLQHLG 146 (214)
T ss_dssp HHHHHSSSCSSCHHHHHHHHHHHHCC--CCGGGGSTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 456677775 56667777777654433333334445555556666555555543
No 315
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=34.94 E-value=37 Score=21.51 Aligned_cols=48 Identities=8% Similarity=0.118 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHhhcC-----CChhhHHHHHHHHH---hcCChhHHHHHHHHHHHCCCCC
Q 045555 110 GDVEKAQRVFWKMLR-----KDKFTWTAMIVGLA---ISGHGDTALDMFSQMLRASIRL 160 (175)
Q Consensus 110 ~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~---~~g~~~~a~~~~~~m~~~g~~p 160 (175)
..+++|.+++..|++ ..+..||..+..+- ..++.. +.+..+..+++.|
T Consensus 72 ~~y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~LK~~l~~~~l~---~FW~~Iv~~~lgL 127 (152)
T 1rw2_A 72 PYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQLN---HFWEIVVQDGITL 127 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHSCCH---HHHHHHHHHTCSS
T ss_pred chHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhHH---HHHHHHHHCCccc
Confidence 457888888888854 36778998887664 445553 3344455556554
No 316
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=33.55 E-value=79 Score=18.98 Aligned_cols=32 Identities=13% Similarity=0.084 Sum_probs=16.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCcHHH
Q 045555 133 MIVGLAISGHGDTALDMFSQMLRASIRLDEVT 164 (175)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 164 (175)
++..+...++.-.|.++++.+.+.+...+..|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~T 47 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTT 47 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhh
Confidence 44444444455556666666555544444433
No 317
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=32.98 E-value=86 Score=19.24 Aligned_cols=44 Identities=18% Similarity=0.003 Sum_probs=27.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHH
Q 045555 126 DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGVL 169 (175)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 169 (175)
-+..=..++..+...+..-.|.++++.+.+.+...+..|..--|
T Consensus 20 ~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L 63 (145)
T 2fe3_A 20 ITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNL 63 (145)
T ss_dssp CCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHH
Confidence 34444556666666667777888888887766555555544333
No 318
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=32.97 E-value=1.2e+02 Score=20.86 Aligned_cols=33 Identities=12% Similarity=0.180 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCcH
Q 045555 129 TWTAMIVGLAISGHGDTALDMFSQMLR-ASIRLDE 162 (175)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~ 162 (175)
....++.+.. .|+.++|.+++.++.. .|..|..
T Consensus 230 ~~~~l~~~~~-~~~~~~a~~~l~~l~~~~g~~~~~ 263 (319)
T 2chq_A 230 EMTELIQTAL-KGNFMEARELLDRLMVEYGMSGED 263 (319)
T ss_dssp HHHHHHHHHH-HTCHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHH-hCCHHHHHHHHHHHHHHcCCCHHH
Confidence 3344555554 3788888888888887 7776644
No 319
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=32.47 E-value=2.2e+02 Score=23.74 Aligned_cols=26 Identities=19% Similarity=0.037 Sum_probs=18.9
Q ss_pred HHHHHHHhccCC---hHHHHHHHHHhHhC
Q 045555 51 TAMIDGYLRVNR---FREALTLFREMQTS 76 (175)
Q Consensus 51 ~~li~~~~~~~~---~~~a~~~~~~m~~~ 76 (175)
..++...|+.|+ .+.|.+.|++....
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~ 718 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSD 718 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhC
Confidence 456666777776 67888888888764
No 320
>3crd_A Raidd; caspase recruitment domain, apoptosis, homophilic interaction; NMR {Homo sapiens} SCOP: a.77.1.3
Probab=32.06 E-value=74 Score=18.18 Aligned_cols=48 Identities=4% Similarity=0.008 Sum_probs=37.0
Q ss_pred hcCCHHHHHHHHHhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 045555 108 KCGDVEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRASI 158 (175)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 158 (175)
..-..+.|.++++.+..++...|..++.++.. .....+.+......|.
T Consensus 47 ~~t~~~k~~~Lld~L~~rG~~Af~~F~~aL~~---~~~La~~L~~~~~~~~ 94 (100)
T 3crd_A 47 QTTGLRKTMLLLDILPSRGPKAFDTFLDSLQE---FPWVREKLKKAREEAM 94 (100)
T ss_dssp CSSSHHHHHHHHHHTTTSCSSCHHHHHHHCTT---HHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHh---CHHHHHHHHhhccccc
Confidence 46778999999999999999999999999964 5555555665555443
No 321
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=32.06 E-value=39 Score=26.47 Aligned_cols=52 Identities=10% Similarity=0.141 Sum_probs=22.0
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHhhcCCCC---ChhHHHHHHHHHhccCChHHH
Q 045555 14 KDVISWTTIVSGYINRGQVDIARQYFAQMPER---DYVLWTAMIDGYLRVNRFREA 66 (175)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a 66 (175)
.+..--..++..|.+.|-.+.|.+++..+-.. +-..+ .-+..|+|+|+++.+
T Consensus 514 ~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 514 VTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLSAHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-------------------------
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHCccHH-HHHHHHHHcCChhhc
Confidence 35556667777777777777777777776543 22234 444567777776554
No 322
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1
Probab=32.01 E-value=89 Score=20.71 Aligned_cols=51 Identities=10% Similarity=0.093 Sum_probs=27.7
Q ss_pred HhhcCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHH--CCCCCcHHHHHHHHh
Q 045555 120 WKMLRK--DKFTWTAMIVGLAISGHGDTALDMFSQMLR--ASIRLDEVTYVGVLS 170 (175)
Q Consensus 120 ~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~t~~~ll~ 170 (175)
+++.+| ....|..++.+.....+.++..+.++.+.. .=-.++..|...|+.
T Consensus 88 ReLPePLl~~~ly~~~~~~~~~~~~~~~~~~~l~~ll~~~~LP~~n~~~L~~L~~ 142 (216)
T 1pbw_A 88 LDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLK 142 (216)
T ss_dssp HTSSSCSSCHHHHHHHHHHGGGCCSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH
T ss_pred HhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 445555 555666666665444555566666666665 323345555555544
No 323
>2bbr_A Viral CAsp8 and FADD-like apoptosis regulator; viral protein; 1.20A {Molluscum contagiosum virus subtype 1} PDB: 2f1s_A
Probab=31.95 E-value=1.1e+02 Score=20.20 Aligned_cols=101 Identities=8% Similarity=0.100 Sum_probs=58.8
Q ss_pred HHHHhhccCCCcHHHHHHHHHHHHhcCChhHHHHHhhcC--------CCCChhHHHHHHH-------------------H
Q 045555 4 ALEIFGNMKNKDVISWTTIVSGYINRGQVDIARQYFAQM--------PERDYVLWTAMID-------------------G 56 (175)
Q Consensus 4 A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m--------~~~~~~~~~~li~-------------------~ 56 (175)
+..+|..+.+.+.-....+...+.+-|+.+....+++.- ..+-...|..++. .
T Consensus 42 i~dlf~~L~e~~~l~~~fL~ELL~~I~R~DLL~~~l~~~~~~ve~~l~~~~is~yR~LL~~Ise~Lt~edl~~lKFL~~~ 121 (195)
T 2bbr_A 42 VTQALCSLSQQRKLTLAALVEMLYVLQRMDLLKSRFGLSKEGAEQLLGTSFLTRYRKLMVCVGEELDSSELRALRLFACN 121 (195)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHTTCHHHHHHHHCCCHHHHHTTTTSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHcCHHHHHHHHHCcCHHHHHHHhcccccCHHHHHHHHHHHhcCHHHHHHHHHHhhc
Confidence 345565555422222566777778888888887776642 1122333443333 2
Q ss_pred HhccCChH-----HHHHHHHHhHhCC-CCCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHH
Q 045555 57 YLRVNRFR-----EALTLFREMQTSN-IRRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFW 120 (175)
Q Consensus 57 ~~~~~~~~-----~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 120 (175)
..-.+..+ .+.++|.+|.+.+ +.|+-..+ +-+.+..-++.+.+..+-+
T Consensus 122 ~ipk~kle~~~~~s~ldlf~~LEk~~~l~~~nL~~----------------L~~iL~~I~R~DL~~~i~~ 175 (195)
T 2bbr_A 122 LNPSLSTALSESSRFVELVLALENVGLVSPSSVSV----------------LADMLRTLRRLDLCQQLVE 175 (195)
T ss_dssp HCGGGGGGCCTTCCHHHHHHHHHHTTSCBTTBCHH----------------HHHHHHHTTCHHHHHHHHH
T ss_pred ccchhhcccccCCCHHHHHHHHHhhCCCCchhHHH----------------HHHHHHHcChHHHHHHHHH
Confidence 33334444 7888999998887 45554444 6667777777776655543
No 324
>1a1w_A FADD protein; apoptosis, death effector domain; NMR {Homo sapiens} SCOP: a.77.1.4 PDB: 1a1z_A
Probab=31.73 E-value=65 Score=18.28 Aligned_cols=60 Identities=13% Similarity=0.080 Sum_probs=37.9
Q ss_pred ChhHHHHHHHHHhccCChHHH---HHHHHHhHhCCC-CCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 045555 46 DYVLWTAMIDGYLRVNRFREA---LTLFREMQTSNI-RRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWK 121 (175)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a---~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 121 (175)
+....-.+...+.-.+..+.+ .++|..+.+.+. .|+-..+ +.+.+.+-|+.+...++.+.
T Consensus 19 el~~LKFLc~d~i~~~kle~i~s~~dlf~~Le~~~~l~~~nl~~----------------L~elL~~I~R~DLl~~v~~~ 82 (91)
T 1a1w_A 19 ELTELKYLCLGRVGKRKLERVQSGLDLFSMLLEQNDLEPGHTEL----------------LRELLASLRRHDLLRRVDDF 82 (91)
T ss_dssp HHHHHHHHHHHHTCSHHHHHCSSSHHHHHHHHHTTSCBTTBCHH----------------HHHHHHHHTCSHHHHHHHHH
T ss_pred HHHHHHHHhHhhccchhhhccCCHHHHHHHHHHcCCCCcchHHH----------------HHHHHHHCCHHHHHHHHHHh
Confidence 333333444445555555544 999999999873 4443333 77777888888888776654
No 325
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=31.13 E-value=79 Score=18.21 Aligned_cols=27 Identities=19% Similarity=0.060 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 045555 96 IFVGIALIDMYCKCGDVEKAQRVFWKM 122 (175)
Q Consensus 96 ~~~~~~li~~~~~~~~~~~a~~~~~~~ 122 (175)
...+....+.+.+.|++++|.+...+.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 345677888999999999998887765
No 326
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=30.25 E-value=1.1e+02 Score=19.49 Aligned_cols=23 Identities=0% Similarity=0.107 Sum_probs=10.5
Q ss_pred hcCChhHHHHHHHHHHHCCCCCc
Q 045555 139 ISGHGDTALDMFSQMLRASIRLD 161 (175)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~g~~p~ 161 (175)
..|+.+.-.++.+-+++.|..||
T Consensus 47 ~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 47 RNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp TCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HcCCcchHHHHHHHHHHCCCCCC
Confidence 34444444444455555554443
No 327
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=29.96 E-value=32 Score=17.23 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=16.7
Q ss_pred CChHHHHHHHHHhHhCCCCCC
Q 045555 61 NRFREALTLFREMQTSNIRRD 81 (175)
Q Consensus 61 ~~~~~a~~~~~~m~~~~~~p~ 81 (175)
.+...|+++++.+.+.|-.|+
T Consensus 7 RDv~RaiELle~lq~sgevp~ 27 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTGEVNN 27 (53)
T ss_dssp HHHHHHHHHHHHHGGGSSSTH
T ss_pred HHHHHHHHHHHHHHHcCCCCc
Confidence 467889999999999886554
No 328
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=29.69 E-value=47 Score=23.22 Aligned_cols=28 Identities=14% Similarity=0.419 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhcCCCC
Q 045555 18 SWTTIVSGYINRGQVDIARQYFAQMPER 45 (175)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 45 (175)
.-|.+++-|...|+.+.|+++++.++..
T Consensus 36 ~~n~l~R~FL~~gkl~AAr~l~~rlp~~ 63 (270)
T 3cqc_A 36 QGNAIMRKFLASKKHEAAKEVFVKIPQD 63 (270)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHCChH
Confidence 4689999999999999999999988763
No 329
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=29.32 E-value=69 Score=19.56 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=9.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhh
Q 045555 101 ALIDMYCKCGDVEKAQRVFWKM 122 (175)
Q Consensus 101 ~li~~~~~~~~~~~a~~~~~~~ 122 (175)
.+++.+...++.-.|.++++.+
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l 39 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDML 39 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHH
Confidence 3444444444444444444444
No 330
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=29.31 E-value=1.3e+02 Score=20.21 Aligned_cols=65 Identities=12% Similarity=0.126 Sum_probs=39.8
Q ss_pred HHHHHHHHHhcc---CChHHHHHHHHHhHhCCCCCChHHHHHhhh-----c-cCcc-hhHHHHHHHHHHhcCCHH
Q 045555 49 LWTAMIDGYLRV---NRFREALTLFREMQTSNIRRDEFTTVRILT-----T-FNND-IFVGIALIDMYCKCGDVE 113 (175)
Q Consensus 49 ~~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~-----~-~~~~-~~~~~~li~~~~~~~~~~ 113 (175)
.+..+|+++.|+ ++.+.|+-.+.+|++.|-.|.-..--.++. | -.|. ..+.++..+++.+.|..|
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 108 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPE 108 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 455677777554 789999999999999997665444332222 1 1222 234445556666655543
No 331
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.93 E-value=1.6e+02 Score=22.89 Aligned_cols=61 Identities=15% Similarity=0.091 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhhcCCCh-h------hHH-HHHHHHHhcCChhHHHHHHHHHHHC
Q 045555 96 IFVGIALIDMYCKCGDVEKAQRVFWKMLRKDK-F------TWT-AMIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 96 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~------~~~-~li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
..++|.++..|...+.++.|..+..+..-|.. . .|. -+...+.-.+++.+|.+.+.....+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45678999999999999999999999966622 2 222 2345666788999999888887643
No 332
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=27.95 E-value=1.1e+02 Score=18.90 Aligned_cols=45 Identities=7% Similarity=-0.011 Sum_probs=25.1
Q ss_pred CHHHHHHHHHhhcCC-------ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 111 DVEKAQRVFWKMLRK-------DKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 111 ~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
+++.+.+.-+.++-. .......-+..+++.|+++.+...+.++..
T Consensus 71 D~~~l~~~aH~LKGssa~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ 122 (149)
T 1yvi_A 71 NFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRN 122 (149)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566655555555321 222334455666777777776666666543
No 333
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=27.60 E-value=3.2e+02 Score=24.19 Aligned_cols=72 Identities=11% Similarity=0.159 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcCC---------------HHHHHHHHHhhcC---C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 045555 99 GIALIDMYCKCGD---------------VEKAQRVFWKMLR---K-DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIR 159 (175)
Q Consensus 99 ~~~li~~~~~~~~---------------~~~a~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 159 (175)
-+.|++++++.|. .++..+.|.++.+ . |.......+..-.++|++..|.+++.++.+..
T Consensus 1237 k~~l~~al~~k~~ala~~~~~~~~~~~~~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k-- 1314 (1354)
T 3lxu_X 1237 KNTLIEALSKKGIAVAKLAVLDDCIKDSLAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEK-- 1314 (1354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSGGGHHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 4578888887443 3445556666533 2 43333333333447899999999999999864
Q ss_pred CcHHHHHHHHhhh
Q 045555 160 LDEVTYVGVLSAC 172 (175)
Q Consensus 160 p~~~t~~~ll~~~ 172 (175)
|....|..++..+
T Consensus 1315 ~~~~~~~~~~~~~ 1327 (1354)
T 3lxu_X 1315 RTRDHFVELAAIN 1327 (1354)
T ss_dssp CCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 7777777666544
No 334
>1n3k_A Astrocytic phosphoprotein PEA-15; death effector domain, six helix bundle, apoptosis; NMR {Cricetulus griseus} SCOP: a.77.1.4
Probab=26.94 E-value=1.1e+02 Score=18.78 Aligned_cols=43 Identities=9% Similarity=0.102 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhHhCCC-CCChHHHHHhhhccCcchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 045555 63 FREALTLFREMQTSNI-RRDEFTTVRILTTFNNDIFVGIALIDMYCKCGDVEKAQRVFWK 121 (175)
Q Consensus 63 ~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 121 (175)
...+.++|..|.+.|. .++-..+ |-+.+.+.|+.+.+..+.+-
T Consensus 39 i~s~ldlF~~Lek~~~L~~~nl~~----------------L~eLL~~I~R~DLlkkI~~y 82 (130)
T 1n3k_A 39 ITTGSAWFSFLESHNKLDKDNLSY----------------IEHIFEISRRPDLLTMVVDY 82 (130)
T ss_dssp CCSHHHHHHHHHHTTTCCSSCCHH----------------HHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCCCccHHH----------------HHHHHHHcChHHHHHHHHHH
Confidence 3478999999999884 4543333 77788888888877665543
No 335
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=26.04 E-value=1.3e+02 Score=19.16 Aligned_cols=54 Identities=11% Similarity=0.102 Sum_probs=37.4
Q ss_pred HhccCChHHHHHHHHHhHhCCCCCChHHHHHhhhccCcchhHHHHHHH------HHHhcCCHHHHHHHHHhh
Q 045555 57 YLRVNRFREALTLFREMQTSNIRRDEFTTVRILTTFNNDIFVGIALID------MYCKCGDVEKAQRVFWKM 122 (175)
Q Consensus 57 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~li~------~~~~~~~~~~a~~~~~~~ 122 (175)
+...|++-+|.+++++.-+....++. ....|..||. ...++|+...|.+++.+.
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~------------er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~A 101 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNT------------ESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTS 101 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSH------------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCch------------HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34459999999999999887544410 1222344554 235789999999999887
No 336
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=24.76 E-value=1e+02 Score=17.51 Aligned_cols=28 Identities=11% Similarity=0.116 Sum_probs=19.6
Q ss_pred hccCChHHHHHHHHHhHhCCCCCChHHH
Q 045555 58 LRVNRFREALTLFREMQTSNIRRDEFTT 85 (175)
Q Consensus 58 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 85 (175)
...|++-+|.+++++.-+....|....+
T Consensus 12 fn~g~~~eaHEvlE~~W~~~~~~~~~~~ 39 (94)
T 2cwy_A 12 WRAGRYYEVHEVLEPYWLKATGEERRLL 39 (94)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HhCCChHHHHHHHHHHHhhCCCchHHHH
Confidence 3459999999999999887633333334
No 337
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=24.69 E-value=1.4e+02 Score=18.84 Aligned_cols=51 Identities=12% Similarity=0.067 Sum_probs=31.6
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCcHHHH
Q 045555 115 AQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQMLRA--SIRLDEVTY 165 (175)
Q Consensus 115 a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~ 165 (175)
+.+.+++.--+-+.--..++..+...++.-.|.++++.+.+. +...+..|.
T Consensus 20 ~~~~L~~~g~r~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTV 72 (162)
T 4ets_A 20 FKKILRQGGLKYTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATV 72 (162)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHH
Confidence 333444333334445566777777777788888888888776 555555443
No 338
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=24.67 E-value=2.1e+02 Score=20.92 Aligned_cols=63 Identities=21% Similarity=0.222 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhcCCCCC----hhHHHHHHHHHhccCC-hHHHHHHHHHhHhCCCCC
Q 045555 18 SWTTIVSGYINRGQVDIARQYFAQMPERD----YVLWTAMIDGYLRVNR-FREALTLFREMQTSNIRR 80 (175)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p 80 (175)
....++.=|...|+.++|.+.++++..|+ ...+..+..++-+... -+.+..++..+...|+-+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls 81 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIAT 81 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCC
Confidence 45788899999999999999999998875 2344444444444322 355566777777666533
No 339
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=24.20 E-value=2.6e+02 Score=23.67 Aligned_cols=98 Identities=14% Similarity=0.192 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHHhHhCCCCCChHHH-------HHhhhccCcchhHHHHHHHHHH--------hcCC
Q 045555 47 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRRDEFTT-------VRILTTFNNDIFVGIALIDMYC--------KCGD 111 (175)
Q Consensus 47 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-------~~l~~~~~~~~~~~~~li~~~~--------~~~~ 111 (175)
......++.-|.+.+...+|+.+.-+..+..+-+....- + ....++..++++.- +..-
T Consensus 145 ~~Lv~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~-------n~~rvclYlls~v~~lv~p~~fr~~v 217 (963)
T 4ady_A 145 TSIFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTS-------ENVKIINYLLTLAITTVTNSKFRSSI 217 (963)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHH-------HHHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccc-------cHHHHHHHHHHHhhccCCChHHHHHH
Q ss_pred HHHHHHHHHhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 045555 112 VEKAQRVFWKMLRKDKFTWTAMIVGLAISGHGDTALDMFSQML 154 (175)
Q Consensus 112 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (175)
+..+.++|.++..|+ |...+.+..+.++.+.+.++|.++.
T Consensus 218 Lr~l~~Iy~k~~~~d---y~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 218 LRKSFDFLMNMPNCD---YLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHHHHSSSCC---HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchh---HHHHHHHHHHcCCHHHHHHHHHHHH
No 340
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=23.64 E-value=99 Score=19.54 Aligned_cols=42 Identities=12% Similarity=0.102 Sum_probs=26.3
Q ss_pred CHHHHHHHHHhhcC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045555 111 DVEKAQRVFWKMLR--KDKFTWTAMIVGLAISGHGDTALDMFSQMLR 155 (175)
Q Consensus 111 ~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (175)
.-+++..+|..+.. .+..+|.-++..+... +...+.|+.+-.
T Consensus 127 ~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~~---~~~~~~F~~~D~ 170 (191)
T 1y1x_A 127 SEQTFQALMRKFDRQRRGSLGFDDYVELSIFV---CRVRNVFAFYDR 170 (191)
T ss_dssp CHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH---HHHHHHHHHHCT
T ss_pred CHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHH---HHHHHHHHHhCc
Confidence 45667777777743 3567787777777654 455556665543
No 341
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=23.41 E-value=76 Score=18.64 Aligned_cols=16 Identities=19% Similarity=0.086 Sum_probs=8.2
Q ss_pred HhcCChhHHHHHHHHH
Q 045555 138 AISGHGDTALDMFSQM 153 (175)
Q Consensus 138 ~~~g~~~~a~~~~~~m 153 (175)
++.|++++|.+.+++.
T Consensus 31 Ak~g~fe~A~~~l~eA 46 (105)
T 2e2a_A 31 AENGDFAKADSLVVEA 46 (105)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHH
Confidence 3455555555555443
No 342
>3kat_A Nacht, LRR and PYD domains-containing protein 1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 3.10A {Homo sapiens}
Probab=23.29 E-value=81 Score=18.57 Aligned_cols=43 Identities=7% Similarity=0.082 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHhhcCCCCChhHHHHHHHHHhcc
Q 045555 15 DVISWTTIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV 60 (175)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~ 60 (175)
+..-|..+- ++.-..++++.+++.........+..++.++.+.
T Consensus 49 teee~e~I~---ae~T~q~k~R~Lld~v~~kG~~A~~~F~~~L~e~ 91 (107)
T 3kat_A 49 SQEQYERVL---AENTRPSQMRKLFSLSQSWDRKCKDGLYQALKET 91 (107)
T ss_dssp CHHHHHHHH---HCCSHHHHHHHHHHGGGGCCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHH---hCCCCHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Confidence 344454433 3566678899999988888888888888887643
No 343
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=23.11 E-value=78 Score=18.52 Aligned_cols=16 Identities=31% Similarity=0.216 Sum_probs=8.1
Q ss_pred HhcCChhHHHHHHHHH
Q 045555 138 AISGHGDTALDMFSQM 153 (175)
Q Consensus 138 ~~~g~~~~a~~~~~~m 153 (175)
++.|++++|.+.+++.
T Consensus 29 Ak~g~fe~A~~~l~eA 44 (103)
T 1wcr_A 29 AKQGDFAAAKAMMDQS 44 (103)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHH
Confidence 3455555555555443
No 344
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=22.15 E-value=1.5e+02 Score=18.32 Aligned_cols=61 Identities=10% Similarity=0.072 Sum_probs=42.3
Q ss_pred HHHHHHhcCCH---HHHHHHHHhhcCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHH
Q 045555 102 LIDMYCKCGDV---EKAQRVFWKMLRK----DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVT 164 (175)
Q Consensus 102 li~~~~~~~~~---~~a~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 164 (175)
..-++.+..+. .++..++.+..+. .-..+--+.-|+.+.|++++|.+..+.+++. .|+..-
T Consensus 46 yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N~Q 113 (134)
T 3o48_A 46 YAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQ 113 (134)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTCHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCCHH
Confidence 45556666554 4566777666432 2345666778899999999999999999864 665433
No 345
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=22.02 E-value=1.6e+02 Score=22.36 Aligned_cols=60 Identities=10% Similarity=0.202 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhhcCC------------ChhhHHH-HHHHHHhcCChhHHHHHHHHHHHC
Q 045555 97 FVGIALIDMYCKCGDVEKAQRVFWKMLRK------------DKFTWTA-MIVGLAISGHGDTALDMFSQMLRA 156 (175)
Q Consensus 97 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~------------~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~ 156 (175)
.+.|.+++.|.+.++.+.+..+++.+..+ ...+|.- +.+.++..+++.+|.+-+.+...+
T Consensus 177 ~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 177 YLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 45688999999999999999999988321 2234444 334566788999988877666543
No 346
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=21.99 E-value=1.4e+02 Score=17.99 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=12.2
Q ss_pred HHHHHHHhcC-CHHHHHHHHHhh
Q 045555 101 ALIDMYCKCG-DVEKAQRVFWKM 122 (175)
Q Consensus 101 ~li~~~~~~~-~~~~a~~~~~~~ 122 (175)
.+++.+...+ ..-.|.++++.+
T Consensus 22 ~Il~~L~~~~~~~~sa~ei~~~l 44 (136)
T 1mzb_A 22 KILQMLDSAEQRHMSAEDVYKAL 44 (136)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHH
Confidence 5566665554 455566666665
No 347
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.53 E-value=1.5e+02 Score=18.25 Aligned_cols=43 Identities=7% Similarity=-0.004 Sum_probs=28.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHH
Q 045555 126 DKFTWTAMIVGLAISGHGDTALDMFSQMLRASIRLDEVTYVGV 168 (175)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 168 (175)
-+.-=..++..+...++.-.|.++++.+.+.+...+..|.---
T Consensus 25 ~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~ 67 (150)
T 2xig_A 25 NSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRI 67 (150)
T ss_dssp CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHH
Confidence 3444556677777777778888888888877655555554333
No 348
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=21.39 E-value=1.2e+02 Score=17.20 Aligned_cols=27 Identities=7% Similarity=0.044 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHCCCCCcHHHHHHHHhh
Q 045555 145 TALDMFSQMLRASIRLDEVTYVGVLSA 171 (175)
Q Consensus 145 ~a~~~~~~m~~~g~~p~~~t~~~ll~~ 171 (175)
.|.++|.++...|..|+...+..|-.|
T Consensus 35 Ga~~ay~rL~~~~~~~c~~~L~aL~gA 61 (93)
T 3bqs_A 35 GSKEAFLRIWENDSSVCMSELYALEGA 61 (93)
T ss_dssp HHHHHHHHHHTTCTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 567778888777888887777666444
No 349
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=21.27 E-value=1.3e+02 Score=17.47 Aligned_cols=29 Identities=10% Similarity=0.217 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHCCCCCcHHHHHHHHhhh
Q 045555 144 DTALDMFSQMLRASIRLDEVTYVGVLSAC 172 (175)
Q Consensus 144 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 172 (175)
-.|.++.+++..-|+.|+......++.-|
T Consensus 26 Vsae~L~eEfdefGi~~~d~VldKc~ELC 54 (101)
T 2keb_A 26 ASAQQLAEELQIFGLDCEEALIEKLVELC 54 (101)
T ss_dssp CCHHHHHHHHHHHTCBCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34666677777778888777766666655
No 350
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=20.48 E-value=1.3e+02 Score=17.12 Aligned_cols=28 Identities=7% Similarity=0.043 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHCCCCCcHHHHHHHHhhh
Q 045555 145 TALDMFSQMLRASIRLDEVTYVGVLSAC 172 (175)
Q Consensus 145 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 172 (175)
.|.+.|.++.+.|..|+...+-.|-.|.
T Consensus 35 Ga~~ay~rLk~~~~~~~~~~L~aL~gAi 62 (93)
T 3mab_A 35 GSKEAFLRIWENDSSVCMSELYALEGAV 62 (93)
T ss_dssp CHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 4677788888778888877776665543
Done!