BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>045556
MLLEIAHFEDVELLWPFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQKG
SRKLVLSKLYKACKQTANPCKTLDGQMGNPFKEHVL

High Scoring Gene Products

Symbol, full name Information P value
rpoB
DNA-directed RNA polymerase subunit beta 		protein from Oryza sativa 1.5e-12
rpoB
DNA-directed RNA polymerase subunit beta 		protein from Oryza sativa Indica Group 1.5e-12
rpoB
DNA-directed RNA polymerase subunit beta 		protein from Oryza sativa Japonica Group 1.5e-12
rpoB
DNA-directed RNA polymerase subunit beta 		protein from Oryza nivara 1.5e-12

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  045556
        (96 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

UNIPROTKB|P0C501 - symbol:rpoB "DNA-directed RNA polymera...   180  1.5e-12   1
UNIPROTKB|P0C502 - symbol:rpoB "DNA-directed RNA polymera...   180  1.5e-12   1
UNIPROTKB|P0C503 - symbol:rpoB "DNA-directed RNA polymera...   180  1.5e-12   1
UNIPROTKB|Q6ENI4 - symbol:rpoB "DNA-directed RNA polymera...   180  1.5e-12   1


>UNIPROTKB|P0C501 [details] [associations]
            symbol:rpoB "DNA-directed RNA polymerase subunit beta"
            species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC]
            HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
            InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
            InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
            InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
            Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
            GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351
            EMBL:AY522331 GO:GO:0009295 GO:GO:0003899 GO:GO:0032549
            Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000218611
            ProteinModelPortal:P0C501 Gramene:P0C501 Genevestigator:P0C501
            Uniprot:P0C501
        Length = 1075

 Score = 180 (68.4 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 44/94 (46%), Positives = 58/94 (61%)

Query:    26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
             +D++FNPL VP RMN+G IFE SL        +H     FDERY+Q+ SRKLV S+LY+A
Sbjct:   853 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 912

Query:    73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
              KQT NP           +  DG+ G+PF++ VL
Sbjct:   913 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 946


>UNIPROTKB|P0C502 [details] [associations]
            symbol:rpoB "DNA-directed RNA polymerase subunit beta"
            species:39946 "Oryza sativa Indica Group" [GO:0009536 "plastid"
            evidence=IC] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
            InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
            InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
            InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
            Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
            GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351
            EMBL:AY522329 GO:GO:0009295 GO:GO:0003899 GO:GO:0032549
            Gene3D:2.40.270.10 Gene3D:2.40.50.150 ProtClustDB:CHL00001
            RefSeq:YP_654206.1 ProteinModelPortal:P0C502 GeneID:4126922
            Gramene:P0C502 Uniprot:P0C502
        Length = 1075

 Score = 180 (68.4 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 44/94 (46%), Positives = 58/94 (61%)

Query:    26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
             +D++FNPL VP RMN+G IFE SL        +H     FDERY+Q+ SRKLV S+LY+A
Sbjct:   853 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 912

Query:    73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
              KQT NP           +  DG+ G+PF++ VL
Sbjct:   913 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 946


>UNIPROTKB|P0C503 [details] [associations]
            symbol:rpoB "DNA-directed RNA polymerase subunit beta"
            species:39947 "Oryza sativa Japonica Group" [GO:0009536 "plastid"
            evidence=IC] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
            InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
            InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
            InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
            Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
            GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:X15901
            EMBL:AY522330 GenomeReviews:AY522330_GR GO:GO:0009295 GO:GO:0003899
            eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
            KO:K03043 ProtClustDB:CHL00001 PIR:JQ0213 RefSeq:NP_039373.1
            ProteinModelPortal:P0C503 STRING:P0C503
            EnsemblPlants:LOC_Osp1g00240.1 GeneID:3131432 KEGG:osa:3131432
            Gramene:P0C503 OMA:HFLVSEK Uniprot:P0C503
        Length = 1075

 Score = 180 (68.4 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 44/94 (46%), Positives = 58/94 (61%)

Query:    26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
             +D++FNPL VP RMN+G IFE SL        +H     FDERY+Q+ SRKLV S+LY+A
Sbjct:   853 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 912

Query:    73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
              KQT NP           +  DG+ G+PF++ VL
Sbjct:   913 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 946


>UNIPROTKB|Q6ENI4 [details] [associations]
            symbol:rpoB "DNA-directed RNA polymerase subunit beta"
            species:4536 "Oryza nivara" [GO:0009536 "plastid" evidence=IC]
            HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
            InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
            InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
            InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
            Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
            GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351
            EMBL:AP006728 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
            Gene3D:2.40.50.150 RefSeq:YP_052739.1 ProteinModelPortal:Q6ENI4
            GeneID:2885962 Gramene:Q6ENI4 ProtClustDB:CHL00001 Uniprot:Q6ENI4
        Length = 1075

 Score = 180 (68.4 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 44/94 (46%), Positives = 58/94 (61%)

Query:    26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
             +D++FNPL VP RMN+G IFE SL        +H     FDERY+Q+ SRKLV S+LY+A
Sbjct:   853 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 912

Query:    73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
              KQT NP           +  DG+ G+PF++ VL
Sbjct:   913 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 946


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.142   0.457    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       96        96   0.00091  102 3  11 22  0.46    29
                                                     29  0.43    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  577 (61 KB)
  Total size of DFA:  127 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.99u 0.12s 11.11t   Elapsed:  00:00:00
  Total cpu time:  10.99u 0.12s 11.11t   Elapsed:  00:00:00
  Start:  Thu May  9 18:06:45 2013   End:  Thu May  9 18:06:45 2013

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