BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045556
(96 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|114329738|ref|YP_740557.1| RNA polymerase beta subunit [Platanus occidentalis]
gi|122166043|sp|Q09G54.1|RPOB_PLAOC RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|114054376|gb|ABI49770.1| RNA polymerase beta subunit [Platanus occidentalis]
Length = 1070
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 49/94 (52%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
ID++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LYKA
Sbjct: 848 IDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYKA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ VL
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVL 941
>gi|290489620|gb|ADD31194.1| RNA polymerase beta subunit protein [Nerium oleander]
Length = 1070
Score = 94.7 bits (234), Expect = 7e-18, Method: Composition-based stats.
Identities = 48/94 (51%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYQA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ GNPF++ VL
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGNPFEQPVL 941
>gi|116617100|ref|YP_817474.1| RNA polymerase beta subunit [Coffea arabica]
gi|122153613|sp|A0A327.1|RPOB_COFAR RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|116242156|gb|ABJ89671.1| RNA polymerase beta subunit [Coffea arabica]
Length = 1066
Score = 94.4 bits (233), Expect = 9e-18, Method: Composition-based stats.
Identities = 48/94 (51%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 844 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYQA 903
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ GNPF++ VL
Sbjct: 904 SKQTANPWVFEAEYPGKSRIFDGRTGNPFEQPVL 937
>gi|313183985|ref|YP_004021142.1| RNA polymerase beta subunit [Castanea mollissima]
gi|309321512|gb|ADO65052.1| RNA polymerase beta subunit [Castanea mollissima]
Length = 1073
Score = 94.4 bits (233), Expect = 9e-18, Method: Composition-based stats.
Identities = 50/104 (48%), Positives = 65/104 (62%), Gaps = 25/104 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+ R ++D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 843 PYLQDGR--SVDMVFNPLGVPSRMNVGQIFECSLGLAGDLLGRHYRIAPFDERYEQEASR 900
Query: 63 KLVLSKLYKACKQTANP----------CKTLDGQMGNPFKEHVL 96
KLV S+LY+A KQTANP + LDG+ G+PF++ VL
Sbjct: 901 KLVFSELYEASKQTANPWVFDPEYPGKSRILDGRTGDPFEQPVL 944
>gi|52220802|ref|YP_086958.1| RNA polymerase beta subunit [Panax ginseng]
gi|68053101|sp|Q68S14.1|RPOB_PANGI RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|51235305|gb|AAT98501.1| RNA polymerase beta subunit [Panax ginseng]
Length = 1071
Score = 94.0 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 61/94 (64%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VPPRMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 849 VDMVFNPLGVPPRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 908
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 909 GKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 942
>gi|225282|prf||1211235T RNA polymerase beta
Length = 1000
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 64/104 (61%), Gaps = 25/104 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+ R ++D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 840 PYLQDGR--SVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASR 897
Query: 63 KLVLSKLYKACKQTANP----------CKTLDGQMGNPFKEHVL 96
KLV S+LY+A KQTANP + DG+ GNPF++ V+
Sbjct: 898 KLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGNPFEQPVI 941
>gi|290489608|gb|ADD31188.1| RNA polymerase beta subunit protein [Dillenia indica]
Length = 1072
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 50/104 (48%), Positives = 64/104 (61%), Gaps = 25/104 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+F S +D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 842 PYFQDG--SPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRILPFDERYEQEASR 899
Query: 63 KLVLSKLYKACKQTANP----------CKTLDGQMGNPFKEHVL 96
KLV S+LYKA KQTANP + DG+ G+PF++ V+
Sbjct: 900 KLVFSELYKASKQTANPWIFEPEYPGKSRIFDGRTGDPFEQPVI 943
>gi|81301554|ref|YP_398851.1| RNA polymerase beta subunit [Nicotiana tomentosiformis]
gi|88909146|sp|Q33C46.1|RPOB_NICTO RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|80750913|dbj|BAE47989.1| RNA polymerase beta subunit [Nicotiana tomentosiformis]
Length = 1070
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 64/104 (61%), Gaps = 25/104 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+ R ++D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 840 PYLQDGR--SVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASR 897
Query: 63 KLVLSKLYKACKQTANP----------CKTLDGQMGNPFKEHVL 96
KLV S+LY+A KQTANP + DG+ GNPF++ V+
Sbjct: 898 KLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGNPFEQPVI 941
>gi|350996418|gb|AEQ36930.1| RNA polymerase beta subunit (chloroplast) [Datura stramonium]
Length = 1070
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 64/104 (61%), Gaps = 25/104 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+ R ++D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 840 PYLQDGR--SVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASR 897
Query: 63 KLVLSKLYKACKQTANP----------CKTLDGQMGNPFKEHVL 96
KLV S+LY+A KQTANP + DG+ GNPF++ V+
Sbjct: 898 KLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGNPFEQPVI 941
>gi|394831094|ref|YP_006503783.1| RNA polymerase beta subunit (chloroplast) [Datura stramonium]
gi|350996505|gb|AEQ37016.1| RNA polymerase beta subunit [Datura stramonium]
Length = 1070
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 64/104 (61%), Gaps = 25/104 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+ R ++D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 840 PYLQDGR--SVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASR 897
Query: 63 KLVLSKLYKACKQTANP----------CKTLDGQMGNPFKEHVL 96
KLV S+LY+A KQTANP + DG+ GNPF++ V+
Sbjct: 898 KLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGNPFEQPVI 941
>gi|351653867|ref|YP_004891592.1| rpoB gene product (chloroplast) [Nicotiana undulata]
gi|347453893|gb|AEO95551.1| RNA polymerase beta subunit (chloroplast) [Nicotiana undulata]
gi|347454004|gb|AEO95661.1| RNA polymerase beta subunit [synthetic construct]
Length = 1070
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 64/104 (61%), Gaps = 25/104 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+ R ++D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 840 PYLQDGR--SVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASR 897
Query: 63 KLVLSKLYKACKQTANP----------CKTLDGQMGNPFKEHVL 96
KLV S+LY+A KQTANP + DG+ GNPF++ V+
Sbjct: 898 KLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGNPFEQPVI 941
>gi|28261709|ref|NP_783224.1| RNA polymerase beta subunit [Atropa belladonna]
gi|41017766|sp|Q8S8X9.1|RPOB_ATRBE RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|20068323|emb|CAC88036.1| RNA polymerase beta subunit [Atropa belladonna]
Length = 1070
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 64/104 (61%), Gaps = 25/104 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+ R ++D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 840 PYLQDGR--SVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASR 897
Query: 63 KLVLSKLYKACKQTANP----------CKTLDGQMGNPFKEHVL 96
KLV S+LY+A KQTANP + DG+ GNPF++ V+
Sbjct: 898 KLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGNPFEQPVI 941
>gi|11465946|ref|NP_054488.1| RNA polymerase beta subunit [Nicotiana tabacum]
gi|78102523|ref|YP_358664.1| RNA polymerase beta subunit [Nicotiana sylvestris]
gi|133424|sp|P06271.1|RPOB_TOBAC RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|88909145|sp|Q3C1G7.1|RPOB_NICSY RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|11781|emb|CAA31238.1| unnamed protein product [Nicotiana tabacum]
gi|11822|emb|CAA77346.1| RNA polymerase beta subunit [Nicotiana tabacum]
gi|77799550|dbj|BAE46639.1| RNA polymerase beta subunit [Nicotiana sylvestris]
Length = 1070
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 64/104 (61%), Gaps = 25/104 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+ R ++D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 840 PYLQDGR--SVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASR 897
Query: 63 KLVLSKLYKACKQTANP----------CKTLDGQMGNPFKEHVL 96
KLV S+LY+A KQTANP + DG+ GNPF++ V+
Sbjct: 898 KLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGNPFEQPVI 941
>gi|283794960|ref|YP_003359351.1| RNA polymerase beta subunit (chloroplast) [Olea europaea]
gi|330850735|ref|YP_004376413.1| RNA polymerase beta subunit [Olea europaea subsp. europaea]
gi|334700274|ref|YP_004563773.1| RNA polymerase beta subunit [Olea europaea subsp. cuspidata]
gi|334701880|ref|YP_004564489.1| RNA polymerase beta subunit [Olea europaea subsp. maroccana]
gi|281428679|gb|ADA69918.1| RNA polymerase beta subunit (chloroplast) [Olea europaea]
gi|291059245|gb|ADD72081.1| RNA polymerase beta subunit [Olea europaea]
gi|328795425|emb|CBR30306.1| RNA polymerase beta subunit [Olea europaea subsp. europaea]
gi|334084393|emb|CBR23821.1| RNA polymerase beta subunit [Olea europaea subsp. cuspidata]
gi|334084479|emb|CBR24612.1| RNA polymerase beta subunit [Olea europaea subsp. europaea]
gi|334084565|emb|CBR30398.1| RNA polymerase beta subunit [Olea europaea subsp. europaea]
gi|334084856|emb|CBS29229.1| RNA polymerase beta subunit [Olea europaea subsp. maroccana]
gi|334084942|emb|CBJ04290.1| RNA polymerase beta subunit [Olea europaea subsp. cuspidata]
gi|334085028|emb|CBR23730.1| RNA polymerase beta subunit [Olea europaea subsp. cuspidata]
Length = 1070
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 48/94 (51%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ GNPF++ VL
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRSGNPFEQPVL 941
>gi|443267299|ref|YP_007375035.1| RNA polymerase beta subunit [Quercus rubra]
gi|290489648|gb|ADD31208.1| RNA polymerase beta subunit protein [Quercus nigra]
gi|441421914|gb|AGC31238.1| RNA polymerase beta subunit [Quercus rubra]
Length = 1073
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 48/94 (51%), Positives = 61/94 (64%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 851 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLGRHYRIAPFDERYEQEASRKLVFSELYEA 910
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + LDG+ G+PF++ VL
Sbjct: 911 SKQTANPWVFDPEYPGKSRILDGRTGDPFEQPVL 944
>gi|91208980|ref|YP_538840.1| RNA polymerase beta subunit [Solanum bulbocastanum]
gi|109914397|sp|Q2MIJ5.1|RPOB_SOLBU RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|84371887|gb|ABC56205.1| RNA polymerase beta subunit [Solanum bulbocastanum]
Length = 1070
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 64/104 (61%), Gaps = 25/104 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+ R ++D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 840 PYLQDGR--SVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASR 897
Query: 63 KLVLSKLYKACKQTANP----------CKTLDGQMGNPFKEHVL 96
KLV S+LY+A KQTANP + DG+ GNPF++ V+
Sbjct: 898 KLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGNPFEQPVI 941
>gi|329124574|gb|AEB72131.1| RNA polymerase beta subunit (chloroplast) [Solanum tuberosum]
gi|329124661|gb|AEB72217.1| RNA polymerase beta subunit (chloroplast) [Solanum tuberosum]
Length = 1070
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 64/104 (61%), Gaps = 25/104 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+ R ++D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 840 PYLQDGR--SVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASR 897
Query: 63 KLVLSKLYKACKQTANP----------CKTLDGQMGNPFKEHVL 96
KLV S+LY+A KQTANP + DG+ GNPF++ V+
Sbjct: 898 KLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGNPFEQPVI 941
>gi|334701611|ref|YP_004563996.1| RNA polymerase beta subunit [Olea woodiana subsp. woodiana]
gi|334084651|emb|CBS29342.1| RNA polymerase beta subunit [Olea woodiana subsp. woodiana]
Length = 1070
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 48/94 (51%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ GNPF++ VL
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRSGNPFEQPVL 941
>gi|88909640|sp|Q2VEI4.1|RPOB_SOLTU RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|82754621|gb|ABB90035.1| RNA polymerase beta chain [Solanum tuberosum]
Length = 1070
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 64/104 (61%), Gaps = 25/104 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+ R ++D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 840 PYLQDGR--SVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASR 897
Query: 63 KLVLSKLYKACKQTANP----------CKTLDGQMGNPFKEHVL 96
KLV S+LY+A KQTANP + DG+ GNPF++ V+
Sbjct: 898 KLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGNPFEQPVI 941
>gi|108773122|ref|YP_635631.1| RNA polymerase beta subunit [Solanum tuberosum]
gi|88656796|gb|ABD47049.1| RNA polymerase beta subunit [Solanum tuberosum]
Length = 1070
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 64/104 (61%), Gaps = 25/104 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+ R ++D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 840 PYLQDGR--SVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASR 897
Query: 63 KLVLSKLYKACKQTANP----------CKTLDGQMGNPFKEHVL 96
KLV S+LY+A KQTANP + DG+ GNPF++ V+
Sbjct: 898 KLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGNPFEQPVI 941
>gi|89280627|ref|YP_514844.1| RNA polymerase beta subunit [Solanum lycopersicum]
gi|109904147|sp|Q2MIA8.1|RPOB_SOLLC RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|84371975|gb|ABC56292.1| RNA polymerase beta subunit [Solanum lycopersicum]
gi|89241663|emb|CAJ32385.1| RNA polymerase beta chain [Solanum lycopersicum]
Length = 1070
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 64/104 (61%), Gaps = 25/104 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+ R ++D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 840 PYLQDGR--SVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASR 897
Query: 63 KLVLSKLYKACKQTANP----------CKTLDGQMGNPFKEHVL 96
KLV S+LY+A KQTANP + DG+ GNPF++ V+
Sbjct: 898 KLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGNPFEQPVI 941
>gi|290489610|gb|ADD31189.1| RNA polymerase beta subunit protein [Ehretia acuminata]
Length = 1070
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ GNPF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGNPFEQPVI 941
>gi|157325522|ref|YP_001468300.1| RNA polymerase beta subunit [Ipomoea purpurea]
gi|182676565|sp|A7Y3B9.1|RPOB_IPOPU RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|157056750|gb|ABV02340.1| RNA polymerase beta subunit [Ipomoea purpurea]
Length = 1067
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 64/104 (61%), Gaps = 25/104 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+ R ++D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 837 PYLQDGR--SVDLVFNPLGVPSRMNLGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASR 894
Query: 63 KLVLSKLYKACKQTANP----------CKTLDGQMGNPFKEHVL 96
K+V S+LY+A KQTANP + DG+ GNPF++ VL
Sbjct: 895 KVVFSELYEASKQTANPWAFEPEYPGKSRIFDGRTGNPFEQPVL 938
>gi|359422253|ref|YP_004935658.1| rpoB gene product (chloroplast) [Sesamum indicum]
gi|347448287|gb|AEO92698.1| RNA polymerase beta subunit (chloroplast) [Sesamum indicum]
Length = 1070
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ GNPF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGNPFEQPVI 941
>gi|364283976|ref|YP_004940502.1| rpoB gene product (chloroplast) [Boea hygrometrica]
gi|340549399|gb|AEK53221.1| RNA polymerase beta subunit (chloroplast) [Boea hygrometrica]
Length = 1070
Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ GNPF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGNPFEQPVI 941
>gi|404474517|ref|YP_006666022.1| RNA polymerase beta subunit (chloroplast) [Capsicum annuum]
gi|401065924|gb|AFP90768.1| RNA polymerase beta subunit (chloroplast) [Capsicum annuum]
Length = 1070
Score = 92.8 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 48/104 (46%), Positives = 64/104 (61%), Gaps = 25/104 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+ R ++D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 840 PYLQDGR--SVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASR 897
Query: 63 KLVLSKLYKACKQTANP----------CKTLDGQMGNPFKEHVL 96
KLV S+LY+A KQT+NP + DG+ GNPF++ V+
Sbjct: 898 KLVFSELYEASKQTSNPWVFEPEYPGKSRIFDGRTGNPFEQPVI 941
>gi|355331965|gb|AER52651.1| RNA polymerase beta subunit [Asclepias cutleri]
gi|355332048|gb|AER52733.1| RNA polymerase beta subunit [Asclepias cutleri]
Length = 1069
Score = 92.8 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYQA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ GNPF++ VL
Sbjct: 908 SKQTGNPWVFEPEYPGKSRLFDGRTGNPFEQPVL 941
>gi|456330884|ref|YP_007475867.1| RNA polymerase beta subunit [Calamus caryotoides]
gi|449326349|gb|AGE92932.1| RNA polymerase beta subunit [Calamus caryotoides]
Length = 1072
Score = 92.8 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
CKQT NP + DG+ G+PF++ VL
Sbjct: 910 CKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 943
>gi|355331882|gb|AER52569.1| RNA polymerase beta subunit [Asclepias coulteri]
Length = 1069
Score = 92.8 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYQA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ GNPF++ VL
Sbjct: 908 SKQTGNPWVFEPEYPGKSRLFDGRTGNPFEQPVL 941
>gi|355332456|gb|AER53136.1| RNA polymerase beta subunit [Asclepias subaphylla]
gi|355332701|gb|AER53378.1| RNA polymerase beta subunit [Asclepias subulata]
Length = 1069
Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYQA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ GNPF++ VL
Sbjct: 908 SKQTGNPWVFEPEYPGKSRLFDGRTGNPFEQPVL 941
>gi|355332213|gb|AER52896.1| RNA polymerase beta subunit [Asclepias macrotis]
gi|355332294|gb|AER52976.1| RNA polymerase beta subunit [Asclepias macrotis]
Length = 1069
Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYQA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ GNPF++ VL
Sbjct: 908 SKQTGNPWVFEPEYPGKSRLFDGRTGNPFEQPVL 941
>gi|355332131|gb|AER52815.1| RNA polymerase beta subunit [Asclepias leptopus]
gi|355332373|gb|AER53054.1| RNA polymerase beta subunit [Asclepias masonii]
gi|355332539|gb|AER53218.1| RNA polymerase beta subunit [Asclepias subaphylla]
Length = 1069
Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYQA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ GNPF++ VL
Sbjct: 908 SKQTGNPWVFEPEYPGKSRLFDGRTGNPFEQPVL 941
>gi|355331799|gb|AER52487.1| RNA polymerase beta subunit [Asclepias albicans]
gi|355332618|gb|AER53296.1| RNA polymerase beta subunit [Asclepias subulata]
Length = 1069
Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYQA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ GNPF++ VL
Sbjct: 908 SKQTGNPWVFEPEYPGKSRLFDGRTGNPFEQPVL 941
>gi|355331716|gb|AER52405.1| RNA polymerase beta subunit [Asclepias albicans]
gi|355332784|gb|AER53460.1| RNA polymerase beta subunit [Asclepias albicans x Asclepias
subulata]
Length = 1069
Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYQA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ GNPF++ VL
Sbjct: 908 SKQTGNPWVFEPEYPGKSRLFDGRTGNPFEQPVL 941
>gi|290489632|gb|ADD31200.1| RNA polymerase beta subunit protein [Cornus florida]
Length = 1070
Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ VL
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVL 941
>gi|69216914|gb|AAZ03991.1| RNA polymerase beta chain [Acorus americanus]
Length = 1068
Score = 92.0 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 846 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 905
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ VL
Sbjct: 906 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVL 939
>gi|68053043|sp|Q5QA72.1|RPOB_ACOGR RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|56122473|gb|AAV74361.1| RpoB [Acorus gramineus]
Length = 1071
Score = 92.0 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 849 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 908
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ VL
Sbjct: 909 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVL 942
>gi|158518563|sp|Q3V542.2|RPOB_ACOCL RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
Length = 1071
Score = 92.0 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 849 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 908
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ VL
Sbjct: 909 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVL 942
>gi|75755651|ref|YP_319757.1| RNA polymerase beta subunit [Acorus calamus]
gi|74381701|emb|CAI53786.1| RNA polymerase beta subunit [Acorus calamus]
Length = 1083
Score = 92.0 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 861 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 920
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ VL
Sbjct: 921 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVL 954
>gi|377581223|gb|AFB70749.1| DNA-directed RNA polymerase subunit beta, partial (chloroplast)
[Pereskiopsis diguetii]
Length = 1055
Score = 92.0 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 833 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 892
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ VL
Sbjct: 893 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVL 926
>gi|449326871|gb|AGE93448.1| RNA polymerase beta subunit [Xiphidium caeruleum]
Length = 1080
Score = 92.0 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 858 VDMVFNPLGVPSRMNVGQIFECSLGFAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 917
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ GNPF++ VL
Sbjct: 918 SKQTKNPWVFEPEYPGKSRIFDGRTGNPFEQPVL 951
>gi|456061443|ref|YP_007475611.1| RNA polymerase beta subunit [Heliconia collinsiana]
gi|449326090|gb|AGE92676.1| RNA polymerase beta subunit [Heliconia collinsiana]
Length = 1083
Score = 92.0 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 861 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 920
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ GNPF++ VL
Sbjct: 921 SKQTKNPWVFEPEYPGKSRIFDGRTGNPFEQPVL 954
>gi|376008299|gb|AFB18357.1| RNA polymerase beta subunit, partial [Tradescantia ohiensis]
Length = 1083
Score = 92.0 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 861 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSQLYEA 920
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ GNPF++ VL
Sbjct: 921 SKQTKNPWVFEPEYPGKSRIFDGRTGNPFEQPVL 954
>gi|11497516|ref|NP_054924.1| RNA polymerase beta subunit [Spinacia oleracea]
gi|133421|sp|P11703.1|RPOB_SPIOL RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|7636097|emb|CAB88717.1| RNA polymerase beta subunit [Spinacia oleracea]
Length = 1070
Score = 92.0 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D+IFNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMIFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 941
>gi|156598352|gb|ABU85436.1| RNA polymerase beta subunit [Musa acuminata]
Length = 1070
Score = 92.0 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ GNPF++ VL
Sbjct: 908 SKQTKNPWVFEPEYPGKSRIFDGRTGNPFEQPVL 941
>gi|377581214|gb|AFB70745.1| DNA-directed RNA polymerase subunit beta, partial (chloroplast)
[Didierea madagascariensis]
Length = 1014
Score = 91.7 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 833 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 892
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 893 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 926
>gi|115605014|ref|YP_784465.1| RNA polymerase beta subunit [Piper cenocladum]
gi|122164370|sp|Q06GR8.1|RPOB_PIPCE RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|112253743|gb|ABI14464.1| RNA polymerase beta subunit [Piper cenocladum]
Length = 1070
Score = 91.7 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDFLGRHYRVAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF + VL
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDPFDQPVL 941
>gi|456061548|ref|YP_007475696.1| RNA polymerase beta subunit [Zingiber spectabile]
gi|449326176|gb|AGE92761.1| RNA polymerase beta subunit [Zingiber spectabile]
Length = 1075
Score = 91.7 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 853 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIASFDERYEQEASRKLVFSELYEA 912
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ GNPF++ VL
Sbjct: 913 SKQTKNPWVFEPEYPGKSRIFDGRTGNPFEQPVL 946
>gi|377581225|gb|AFB70750.1| DNA-directed RNA polymerase subunit beta, partial (chloroplast)
[Portulaca oleracea]
Length = 1014
Score = 91.7 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 833 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 892
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 893 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 926
>gi|346683286|ref|YP_004842231.1| RNA polymerase beta subunit [Pyrus pyrifolia]
gi|345433553|dbj|BAK69375.1| RNA polymerase beta subunit [Pyrus pyrifolia]
Length = 1068
Score = 91.7 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 846 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 905
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 906 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 939
>gi|325126857|ref|YP_004286094.1| RNA polymerase beta subunit [Fragaria vesca subsp. vesca]
gi|408830237|ref|YP_006883255.1| RNA polymerase beta subunit (chloroplast) [Fragaria vesca subsp.
bracteata]
gi|408830312|ref|YP_006883329.1| RNA polymerase beta subunit [Fragaria mandshurica]
gi|428697191|ref|YP_007025375.1| RNA polymerase beta subunit (chloroplast) [Fragaria chiloensis]
gi|428697277|ref|YP_007025460.1| RNA polymerase beta subunit (chloroplast) [Fragaria virginiana]
gi|324022769|gb|ADY15343.1| RNA polymerase beta subunit [Fragaria vesca subsp. vesca]
gi|357198730|gb|AET62646.1| RNA polymerase beta subunit (chloroplast) [Fragaria chiloensis]
gi|357198816|gb|AET62731.1| RNA polymerase beta subunit (chloroplast) [Fragaria virginiana]
gi|378554699|gb|AFC17634.1| RNA polymerase beta subunit (chloroplast) [Fragaria vesca subsp.
bracteata]
gi|378554774|gb|AFC17708.1| RNA polymerase beta subunit [Fragaria mandshurica]
gi|407080458|gb|AFS89547.1| RNA polymerase beta subunit (chloroplast) [Fragaria chiloensis]
Length = 1070
Score = 91.7 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 941
>gi|290489638|gb|ADD31203.1| RNA polymerase beta subunit protein [Gunnera manicata]
Length = 1070
Score = 91.7 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 941
>gi|290489614|gb|ADD31191.1| RNA polymerase beta subunit protein [Lonicera japonica]
Length = 1067
Score = 91.7 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 845 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLNRHYRIAPFDERYEQEASRKLVFSELYEA 904
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 905 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 938
>gi|115391894|ref|YP_778482.1| RNA polymerase beta subunit [Jasminum nudiflorum]
gi|122164981|sp|Q06RD9.1|RPOB_JASNU RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|110456215|gb|ABG74620.1| RNA polymerase beta subunit [Jasminum nudiflorum]
Length = 1064
Score = 91.7 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 842 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIVPFDERYEQEASRKLVFSELYEA 901
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ GNPF++ +L
Sbjct: 902 SKQTTNPWVFEPEYPGKSRIFDGRSGNPFEQPIL 935
>gi|313183814|ref|YP_004021657.1| RNA polymerase beta subunit [Prunus persica]
gi|309321426|gb|ADO64967.1| RNA polymerase beta subunit [Prunus persica]
Length = 1070
Score = 91.7 bits (226), Expect = 6e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 941
>gi|406822439|gb|AFS60683.1| RNA polymerase beta subunit, partial [Fragaria vesca subsp.
americana]
gi|406822443|gb|AFS60686.1| RNA polymerase beta subunit, partial [Fragaria vesca subsp. vesca]
gi|406822446|gb|AFS60688.1| RNA polymerase beta subunit, partial [Fragaria x bifera]
gi|406822452|gb|AFS60692.1| RNA polymerase beta subunit, partial [Fragaria virginiana]
gi|406822455|gb|AFS60694.1| RNA polymerase beta subunit, partial [Fragaria bucharica]
gi|406822458|gb|AFS60696.1| RNA polymerase beta subunit, partial [Fragaria orientalis]
gi|406822461|gb|AFS60698.1| RNA polymerase beta subunit, partial [Fragaria viridis]
gi|406822464|gb|AFS60700.1| RNA polymerase beta subunit, partial [Fragaria chinensis]
gi|406822467|gb|AFS60702.1| RNA polymerase beta subunit, partial [Fragaria moupinensis]
gi|406822470|gb|AFS60704.1| RNA polymerase beta subunit, partial [Fragaria tibetica]
gi|406822473|gb|AFS60706.1| RNA polymerase beta subunit, partial [Fragaria daltoniana]
gi|406822476|gb|AFS60708.1| RNA polymerase beta subunit, partial [Fragaria corymbosa]
gi|406822479|gb|AFS60710.1| RNA polymerase beta subunit, partial [Fragaria gracilis]
Length = 807
Score = 91.7 bits (226), Expect = 6e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 585 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 644
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 645 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 678
>gi|229577746|ref|YP_002836082.1| RNA polymerase beta subunit [Megaleranthis saniculifolia]
gi|226933874|gb|ACO92007.1| RNA polymerase beta subunit [Megaleranthis saniculifolia]
Length = 1071
Score = 91.7 bits (226), Expect = 6e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 849 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRISPFDERYEQEASRKLVFSELYEA 908
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 909 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 942
>gi|149390532|ref|YP_001294176.1| RNA polymerase beta subunit [Buxus microphylla]
gi|158513756|sp|A6MM28.1|RPOB_BUXMI RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|146762277|gb|ABQ45241.1| RNA polymerase beta subunit [Buxus microphylla]
Length = 1070
Score = 91.7 bits (226), Expect = 6e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 941
>gi|290489642|gb|ADD31205.1| RNA polymerase beta subunit protein [Liquidambar styraciflua]
Length = 1070
Score = 91.3 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 941
>gi|406822449|gb|AFS60690.1| RNA polymerase beta subunit, partial [Fragaria x ananassa subsp.
cuneifolia]
Length = 807
Score = 91.3 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 585 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 644
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 645 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 678
>gi|139390144|ref|YP_001123717.1| RNA polymerase beta subunit [Lobularia maritima]
gi|158513985|sp|A4QLI6.1|RPOB_LOBMA RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|134286921|dbj|BAF50541.1| RNA polymerase beta subunit [Lobularia maritima]
Length = 1072
Score = 91.3 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYQA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 910 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 943
>gi|334361941|ref|YP_004563859.1| RNA polymerase beta subunit [Nelumbo lutea]
gi|224474126|gb|ACN49315.1| RNA polymerase beta subunit [Nelumbo lutea]
gi|383286884|gb|AFH01533.1| RNA polymerase beta subunit (chloroplast) [Nelumbo lutea]
Length = 1070
Score = 91.3 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 941
>gi|334362041|ref|YP_004564095.1| RNA polymerase beta subunit [Nelumbo nucifera]
gi|224474214|gb|ACN49400.1| RNA polymerase beta subunit [Nelumbo nucifera]
gi|290489618|gb|ADD31193.1| RNA polymerase beta subunit protein [Nelumbo nucifera]
gi|383286789|gb|AFH01439.1| RNA polymerase beta subunit (chloroplast) [Nelumbo nucifera]
Length = 1070
Score = 91.3 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 941
>gi|139389256|ref|YP_001123022.1| RNA polymerase beta subunit [Aethionema grandiflorum]
gi|158513606|sp|A4QJJ1.1|RPOB_AETGR RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|134286218|dbj|BAF49846.1| RNA polymerase beta subunit [Aethionema grandiflorum]
Length = 1073
Score = 91.3 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 851 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 910
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 911 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 944
>gi|225544116|ref|YP_002720104.1| rpoB [Jatropha curcas]
gi|224979557|gb|ACN72684.1| rpoB [Jatropha curcas]
Length = 1072
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 910 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 943
>gi|139390340|ref|YP_001122938.1| RNA polymerase beta subunit [Aethionema cordifolium]
gi|158513599|sp|A4QJA7.1|RPOB_AETCO RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|134286133|dbj|BAF49762.1| RNA polymerase beta subunit [Aethionema cordifolium]
Length = 1073
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 851 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 910
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 911 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 944
>gi|377581216|gb|AFB70746.1| DNA-directed RNA polymerase subunit beta, partial (chloroplast)
[Maihuenia poeppigii]
Length = 1013
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 832 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 891
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 892 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 925
>gi|290489640|gb|ADD31204.1| RNA polymerase beta subunit protein [Heuchera sanguinea]
Length = 1072
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 910 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 943
>gi|290489628|gb|ADD31198.1| RNA polymerase beta subunit protein [Berberidopsis corallina]
Length = 1070
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLTGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 941
>gi|2196464|emb|CAA74024.1| DNA-dependent RNA polymerase subunit beta [Arabidopsis thaliana]
Length = 1078
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 856 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 915
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 916 SKQTANPWVFEPEYPGKTRIFDGRTGDPFEQPVI 949
>gi|342316197|ref|YP_004769706.1| RNA polymerase beta subunit [Magnolia kwangsiensis]
gi|302424172|gb|ADL39048.1| RNA polymerase beta subunit [Magnolia kwangsiensis]
Length = 1079
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY A
Sbjct: 857 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYSA 916
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 917 SKQTANPWVFEPECPGKSRIFDGRTGDPFEQPVI 950
>gi|158518554|sp|Q0G9M7.2|RPOB_LIRTU RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
Length = 1070
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYSA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 908 SKQTANPWVFEPECPGKSRIFDGRTGDPFEQPVI 941
>gi|114107038|ref|YP_740194.1| RNA polymerase beta subunit [Liriodendron tulipifera]
gi|113200986|gb|ABI32501.1| RNA polymerase beta subunit [Liriodendron tulipifera]
Length = 1079
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY A
Sbjct: 857 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYSA 916
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 917 SKQTANPWVFEPECPGKSRIFDGRTGDPFEQPVI 950
>gi|290489646|gb|ADD31207.1| RNA polymerase beta subunit protein [Plumbago auriculata]
Length = 1067
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 845 VDMVFNPLGVPSRMNVGQIFECSLGLAGELLDRHYRIAPFDERYEQEASRKLVFSELYEA 904
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 905 SKQTANPWVFELESPGKSRIFDGRTGDPFEQLVI 938
>gi|452848848|ref|YP_007474528.1| RNA polymerase beta subunit (chloroplast) [Magnolia grandiflora]
gi|372862835|gb|AEX98911.1| RNA polymerase beta subunit (chloroplast) [Magnolia grandiflora]
gi|372863005|gb|AEX99079.1| RNA polymerase beta subunit (chloroplast) [Magnolia grandiflora]
Length = 1079
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY A
Sbjct: 857 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYSA 916
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 917 SKQTANPWVFEPECPGKSRIFDGRTGDPFEQPVI 950
>gi|452848680|ref|YP_007474362.1| RNA polymerase beta subunit (chloroplast) [Magnolia officinalis]
gi|452848763|ref|YP_007474444.1| RNA polymerase beta subunit (chloroplast) [Magnolia officinalis
subsp. biloba]
gi|372862413|gb|AEX98494.1| RNA polymerase beta subunit (chloroplast) [Magnolia officinalis]
gi|372862496|gb|AEX98576.1| RNA polymerase beta subunit (chloroplast) [Magnolia officinalis
subsp. biloba]
gi|372862581|gb|AEX98660.1| RNA polymerase beta subunit (chloroplast) [Magnolia officinalis
subsp. biloba]
gi|372862666|gb|AEX98744.1| RNA polymerase beta subunit (chloroplast) [Magnolia officinalis
subsp. biloba]
Length = 1079
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY A
Sbjct: 857 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYSA 916
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 917 SKQTANPWVFEPECPGKSRIFDGRTGDPFEQPVI 950
>gi|372862159|gb|AEX98243.1| RNA polymerase beta subunit (chloroplast) [Magnolia liliiflora]
Length = 1079
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY A
Sbjct: 857 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYSA 916
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 917 SKQTANPWVFEPECPGKSRIFDGRTGDPFEQPVI 950
>gi|400256580|ref|YP_006576107.1| RpoB (chloroplast) [Magnolia denudata]
gi|343887531|gb|AEM65210.1| RpoB [Magnolia denudata]
gi|372862243|gb|AEX98326.1| RNA polymerase beta subunit (chloroplast) [Magnolia denudata]
Length = 1079
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY A
Sbjct: 857 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYSA 916
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 917 SKQTANPWVFEPECPGKSRIFDGRTGDPFEQPVI 950
>gi|377581227|gb|AFB70751.1| DNA-directed RNA polymerase subunit beta, partial (chloroplast)
[Weingartia kargliana]
Length = 1014
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 833 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 892
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 893 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 926
>gi|290489650|gb|ADD31209.1| RNA polymerase beta subunit protein [Staphylea colchica]
Length = 1070
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 941
>gi|139389634|ref|YP_001123191.1| RNA polymerase beta subunit [Arabis hirsuta]
gi|158513575|sp|A4QK10.1|RPOB_ARAHI RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|134286389|dbj|BAF50015.1| RNA polymerase beta subunit [Arabis hirsuta]
Length = 1072
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 910 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 943
>gi|139389410|ref|YP_001123107.1| RNA polymerase beta subunit [Olimarabidopsis pumila]
gi|158513625|sp|A4QJS5.1|RPOB_OLIPU RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|134286304|dbj|BAF49931.1| RNA polymerase beta subunit [Olimarabidopsis pumila]
Length = 1072
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 910 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 943
>gi|139389942|ref|YP_001123542.1| RNA polymerase beta subunit [Draba nemorosa]
gi|158513971|sp|A4QL11.1|RPOB_DRANE RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|134286744|dbj|BAF50366.1| RNA polymerase beta subunit [Draba nemorosa]
Length = 1072
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 910 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 943
>gi|372481300|gb|AEX94325.1| RNA polymerase beta subunit (chloroplast) [Camassia scilloides]
Length = 1070
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP K DG+ G+PF++ VL
Sbjct: 908 SKQTKNPWVFEPEYPGKSKIFDGRTGDPFEQPVL 941
>gi|342316366|ref|YP_004769939.1| RNA polymerase beta subunit (chloroplast) [Wolffia australiana]
gi|341834231|gb|AEK94500.1| RNA polymerase beta subunit [Wolffia australiana]
Length = 1072
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLNRHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP K DG+ G+PF++ VL
Sbjct: 910 SKQTKNPWVFEPEYPGKSKIFDGRTGDPFEQPVL 943
>gi|404474603|ref|YP_006666285.1| RNA polymerase beta subunit (chloroplast) [Pachycladon enysii]
gi|401786718|gb|AFQ07784.1| RNA polymerase beta subunit (chloroplast) [Pachycladon enysii]
Length = 1072
Score = 91.3 bits (225), Expect = 8e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 910 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 943
>gi|139388902|ref|YP_001123629.1| RNA polymerase beta subunit [Lepidium virginicum]
gi|158513978|sp|A4QL98.1|RPOB_LEPVR RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|134286832|dbj|BAF50453.1| RNA polymerase beta subunit [Lepidium virginicum]
Length = 1072
Score = 91.3 bits (225), Expect = 8e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 910 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 943
>gi|342316282|ref|YP_004769804.1| RNA polymerase beta subunit (chloroplast) [Wolffiella lingulata]
gi|341834147|gb|AEK94417.1| RNA polymerase beta subunit [Wolffiella lingulata]
Length = 1072
Score = 90.9 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLNRHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP K DG+ G+PF++ VL
Sbjct: 910 SKQTKNPWVFEPEYPGKSKIFDGRTGDPFEQPVL 943
>gi|69216924|gb|AAZ03996.1| RNA polymerase beta chain [Yucca schidigera]
Length = 1069
Score = 90.9 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP K DG+ G+PF++ VL
Sbjct: 908 SKQTKNPWVFEPEYPGKSKIFDGRTGDPFEQPVL 941
>gi|401879734|gb|AFQ30921.1| RNA polymerase beta subunit (chloroplast) [Salvia miltiorrhiza]
Length = 1070
Score = 90.9 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGFLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGSPFEQPVI 941
>gi|372481316|gb|AEX94333.1| RNA polymerase beta subunit (chloroplast) [Tulbaghia violacea]
Length = 1070
Score = 90.9 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 46/96 (47%), Positives = 61/96 (63%), Gaps = 23/96 (23%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLY 70
+++D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY
Sbjct: 846 TSVDMVFNPLGVPSRMNVGQIFECSLGLAGHLLKRHYRIAPFDERYEQEASRKLVFSELY 905
Query: 71 KACKQTANP----------CKTLDGQMGNPFKEHVL 96
+A KQT NP + DG+ G+PF++ VL
Sbjct: 906 EASKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 941
>gi|169142859|ref|YP_001687282.1| RNA polymerase beta subunit [Oenothera glazioviana]
gi|159895471|gb|ABX10036.1| RNA polymerase beta subunit [Oenothera glazioviana]
Length = 1072
Score = 90.9 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGFAGDLLERHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 910 SKQTANPWVFEPEYPGKSRLFDGRTGDPFEQPVI 943
>gi|169142709|ref|YP_001687136.1| RNA polymerase beta subunit [Oenothera argillicola]
gi|169143030|ref|YP_001687450.1| RNA polymerase beta subunit [Oenothera parviflora]
gi|159792947|gb|ABW98703.1| RNA polymerase beta subunit [Oenothera argillicola]
gi|159895556|gb|ABX10120.1| RNA polymerase beta subunit [Oenothera parviflora]
Length = 1072
Score = 90.9 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGFAGDLLERHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 910 SKQTANPWVFEPEYPGKSRLFDGRTGDPFEQPVI 943
>gi|359422136|ref|YP_004935544.1| RNA polymerase beta subunit (chloroplast) [Eleutherococcus
senticosus]
gi|347448199|gb|AEO92611.1| RNA polymerase beta subunit (chloroplast) [Eleutherococcus
senticosus]
Length = 1070
Score = 90.9 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 908 GKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 941
>gi|290489604|gb|ADD31186.1| RNA polymerase beta subunit protein [Antirrhinum majus]
Length = 1070
Score = 90.9 bits (224), Expect = 9e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
++TANP + DG+ GNPF++ VL
Sbjct: 908 SQRTANPWVFEPEYPGKSRIFDGRTGNPFEQPVL 941
>gi|372481306|gb|AEX94328.1| RNA polymerase beta subunit (chloroplast) [Manfreda virginica]
gi|372481308|gb|AEX94329.1| RNA polymerase beta subunit (chloroplast) [Polianthes sp. Pires
2011-05]
Length = 1068
Score = 90.9 bits (224), Expect = 9e-17, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 846 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 905
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP K DG+ G+PF++ VL
Sbjct: 906 SKQTKNPWVFEPEYPGKSKIFDGRTGDPFEQPVL 939
>gi|372481304|gb|AEX94327.1| RNA polymerase beta subunit (chloroplast) [Hosta ventricosa]
Length = 1070
Score = 90.9 bits (224), Expect = 9e-17, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP K DG+ G+PF++ VL
Sbjct: 908 SKQTKNPWVFEPEYPGKSKIFDGRTGDPFEQPVL 941
>gi|164597817|ref|NP_084686.2| RNA polymerase beta subunit [Oenothera elata subsp. hookeri]
gi|169142944|ref|YP_001687366.1| RNA polymerase beta subunit [Oenothera biennis]
gi|172045800|sp|Q9MTM5.2|RPOB_OENEH RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|159793117|gb|ABW98871.1| RNA polymerase beta subunit [Oenothera biennis]
gi|162423684|emb|CAB67151.2| RNA polymerase beta subunit [Oenothera elata subsp. hookeri]
Length = 1072
Score = 90.9 bits (224), Expect = 9e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGFAGDLLERHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 910 SKQTANPWVFEPEYPGKSRLFDGRTGDPFEQPVI 943
>gi|317046165|ref|YP_004072454.1| RNA polymerase beta subunit [Corynocarpus laevigata]
gi|309252882|gb|ADO60302.1| RNA polymerase beta subunit [Corynocarpus laevigata]
Length = 1070
Score = 90.9 bits (224), Expect = 9e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIVPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTA+P + DG+ GNPF++ V+
Sbjct: 908 SKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPVI 941
>gi|383930496|ref|YP_005089944.1| rpoB gene product (chloroplast) [Brassica napus]
gi|262400793|gb|ACY66282.1| RNA polymerase beta subunit [Brassica napus]
Length = 1072
Score = 90.9 bits (224), Expect = 9e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 910 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 943
>gi|376008254|gb|AFB18336.1| RNA polymerase beta subunit, partial [Hesperaloe parviflora]
Length = 1077
Score = 90.9 bits (224), Expect = 9e-17, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 856 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLKRHYRIAPFDERYEQEASRKLVFSELYEA 915
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP K DG+ G+PF++ VL
Sbjct: 916 SKQTKNPWVFEPEYPGKSKIFDGRTGDPFEQPVL 949
>gi|114329960|ref|YP_740642.1| RNA polymerase beta subunit [Nandina domestica]
gi|122165969|sp|Q09FW9.1|RPOB_NANDO RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|114054462|gb|ABI49855.1| RNA polymerase beta subunit [Nandina domestica]
Length = 1070
Score = 90.9 bits (224), Expect = 9e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF + V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDPFAQPVI 941
>gi|377581212|gb|AFB70744.1| DNA-directed RNA polymerase subunit beta, partial (chloroplast)
[Blossfeldia liliputana]
Length = 723
Score = 90.9 bits (224), Expect = 9e-17, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 501 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 560
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 561 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 594
>gi|393396104|ref|YP_006460343.1| RNA polymerase beta subunit (chloroplast) [Vigna unguiculata]
gi|387598468|gb|AFJ91860.1| RNA polymerase beta subunit (chloroplast) [Vigna unguiculata]
Length = 1070
Score = 90.9 bits (224), Expect = 9e-17, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLSGGMLDRHYRITPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT+NP K DG+ GN FK+ L
Sbjct: 908 SKQTSNPWIFEPEYPGKSKIFDGRTGNSFKQPAL 941
>gi|349589857|gb|AEP94828.1| RNA polymerase beta subunit [Vigna unguiculata]
Length = 1070
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLSGGMLDRHYRITPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT+NP K DG+ GN FK+ L
Sbjct: 908 SKQTSNPWIFEPEYPGKSKIFDGRTGNSFKQPAL 941
>gi|371926667|gb|AEX58448.1| RNA polymerase beta subunit (chloroplast) [Theobroma grandiflorum]
Length = 1070
Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 908 GKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 941
>gi|313199695|ref|YP_004021309.1| RNA polymerase beta subunit [Theobroma cacao]
gi|309321259|gb|ADO64802.1| RNA polymerase beta subunit [Theobroma cacao]
gi|328924776|gb|ADO64882.2| RNA polymerase beta subunit [Theobroma cacao]
gi|371925929|gb|AEX57719.1| RNA polymerase beta subunit (chloroplast) [Theobroma cacao]
gi|371926011|gb|AEX57800.1| RNA polymerase beta subunit (chloroplast) [Theobroma cacao]
gi|371926093|gb|AEX57881.1| RNA polymerase beta subunit (chloroplast) [Theobroma cacao]
gi|371926175|gb|AEX57962.1| RNA polymerase beta subunit (chloroplast) [Theobroma cacao]
gi|371926257|gb|AEX58043.1| RNA polymerase beta subunit (chloroplast) [Theobroma cacao]
gi|371926339|gb|AEX58124.1| RNA polymerase beta subunit (chloroplast) [Theobroma cacao]
gi|371926421|gb|AEX58205.1| RNA polymerase beta subunit (chloroplast) [Theobroma cacao]
gi|371926503|gb|AEX58286.1| RNA polymerase beta subunit (chloroplast) [Theobroma cacao]
gi|371926585|gb|AEX58367.1| RNA polymerase beta subunit (chloroplast) [Theobroma cacao]
gi|371926749|gb|AEX58529.1| RNA polymerase beta subunit (chloroplast) [Theobroma cacao]
Length = 1070
Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 908 GKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 941
>gi|110227071|ref|YP_665550.1| RNA polymerase beta subunit [Populus alba]
gi|122237048|sp|Q14FG5.1|RPOB_POPAL RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|109945509|dbj|BAE97197.1| RNA polymerase beta chain [Populus alba]
Length = 1070
Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLARHYRVAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 908 GKQTANPWVFEPECPGKSRIFDGRTGDPFEQPVI 941
>gi|442742955|ref|YP_007353907.1| RNA polymerase beta subunit (chloroplast) [Tectona grandis]
gi|438687596|emb|CCP47122.1| RNA polymerase beta subunit (chloroplast) [Tectona grandis]
gi|438688280|emb|CCP47211.1| RNA polymerase beta subunit (chloroplast) [Tectona grandis]
gi|438688404|emb|CCP47300.1| RNA polymerase beta subunit (chloroplast) [Tectona grandis]
Length = 1070
Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 908 GKQTANPWVFEPEYPGKSRIFDGRTGSPFEQPVI 941
>gi|50346774|ref|YP_053147.1| RNA polymerase beta subunit [Nymphaea alba]
gi|68053165|sp|Q6EW56.1|RPOB_NYMAL RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|50250319|emb|CAF28585.1| RNA polymerase beta subunit [Nymphaea alba]
Length = 1071
Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G +FECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 849 VDMVFNPLGVPSRMNVGQMFECSLGLAGDLLGRHYRITPFDERYEQEASRKLVFSELYEA 908
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 909 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 942
>gi|290489634|gb|ADD31201.1| RNA polymerase beta subunit protein [Euonymus americanus]
Length = 1072
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 60/96 (62%), Gaps = 23/96 (23%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLY 70
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY
Sbjct: 848 GTVDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELY 907
Query: 71 KACKQTANP----------CKTLDGQMGNPFKEHVL 96
+A KQTANP + DG+ GNPF++ V+
Sbjct: 908 EASKQTANPWVFEPEYPGKSRIFDGRTGNPFEQPVI 943
>gi|121720605|ref|YP_001001526.1| RNA polymerase beta subunit [Nuphar advena]
gi|69216918|gb|AAZ03993.1| RNA polymerase beta chain [Nuphar advena]
gi|84682196|gb|ABC60450.1| RNA polymerase beta subunit [Nuphar advena]
Length = 1071
Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G +FECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 849 VDMVFNPLGVPSRMNVGQMFECSLGLAGDLLGRHYRITPFDERYEQEASRKLVFSELYEA 908
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 909 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 942
>gi|376008237|gb|AFB18328.1| RNA polymerase beta subunit, partial [Chlorophytum rhizopendulum]
Length = 1070
Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 849 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRVAPFDERYEQEASRKLVFSELYEA 908
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP K DG+ G PF++ VL
Sbjct: 909 SKQTKNPWVFEPEYPGKSKIFDGRTGGPFEQPVL 942
>gi|372481350|gb|AEX94350.1| RNA polymerase beta subunit (chloroplast) [Ledebouria cordifolia]
Length = 1070
Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIGPFDERYEQEASRKLVFSQLYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 908 SKQTKNPWVFESEYPGKSRIFDGRTGDPFEQPVL 941
>gi|372481302|gb|AEX94326.1| RNA polymerase beta subunit (chloroplast) [Echeandia sp. Steele
1101]
Length = 1070
Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRVAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP K DG+ G PF++ VL
Sbjct: 908 SKQTKNPWVFEPEYPGKSKIFDGRTGGPFEQPVL 941
>gi|404474403|ref|YP_006665772.1| RNA polymerase beta subunit (chloroplast) [Elodea canadensis]
gi|374094588|gb|AEY84644.1| RNA polymerase beta subunit (chloroplast) [Elodea canadensis]
Length = 1070
Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 908 SKQTTNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 941
>gi|114329648|ref|YP_740467.1| RNA polymerase beta subunit [Citrus sinensis]
gi|122166191|sp|Q09MI6.1|RPOB_CITSI RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|113952614|gb|ABI49012.1| RNA polymerase beta subunit [Citrus sinensis]
Length = 1070
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF+E VL
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEEPVL 941
>gi|372481380|gb|AEX94365.1| RNA polymerase beta subunit (chloroplast) [Brodiaea californica]
Length = 1070
Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 908 SKQTKNPWAFEPEYPGKSRIFDGRTGDPFEQPVL 941
>gi|372481386|gb|AEX94368.1| RNA polymerase beta subunit (chloroplast) [Dichelostemma ida-maia]
Length = 1070
Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 908 SKQTKNPWAFEPEYPGKSRIFDGRTGDPFEQPVL 941
>gi|372481384|gb|AEX94367.1| RNA polymerase beta subunit (chloroplast) [Dichelostemma congestum]
Length = 1070
Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 908 SKQTKNPWAFEPEYPGKSRIFDGRTGDPFEQPVL 941
>gi|372481368|gb|AEX94359.1| RNA polymerase beta subunit (chloroplast) [Liriope spicata]
Length = 1073
Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 851 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 910
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 911 SKQTKNPWVFEPEFPGKSRIFDGRTGDPFEQPVL 944
>gi|372481376|gb|AEX94363.1| RNA polymerase beta subunit (chloroplast) [Maianthemum stellatum]
Length = 1073
Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 851 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 910
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 911 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 944
>gi|372481370|gb|AEX94360.1| RNA polymerase beta subunit (chloroplast) [Ophiopogon japonicus]
Length = 1073
Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 851 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLRRHYRIAPFDERYEQEASRKLVFSELYEA 910
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 911 SKQTKNPWVFEPEFPGKSRIFDGRTGDPFEQPVL 944
>gi|372481364|gb|AEX94357.1| RNA polymerase beta subunit (chloroplast) [Dasylirion wheeleri]
Length = 1073
Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 851 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 910
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 911 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 944
>gi|289066826|ref|YP_003434344.1| RNA polymerase beta subunit [Vigna radiata]
gi|259020013|gb|ACV90211.1| RNA polymerase beta subunit [Vigna radiata]
Length = 1070
Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/91 (50%), Positives = 57/91 (62%), Gaps = 23/91 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLSGGMLDRHYRITPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKE 93
KQT+NP K DG+ GN FK+
Sbjct: 908 SKQTSNPWIFEPEYPGKSKIFDGRTGNSFKQ 938
>gi|289065081|ref|YP_003433967.1| RNA polymerase beta subunit [Typha latifolia]
gi|69216922|gb|AAZ03995.1| RNA polymerase beta chain [Typha latifolia]
gi|281371764|gb|ADA63691.1| RNA polymerase beta subunit [Typha latifolia]
Length = 1072
Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 910 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 943
>gi|372481372|gb|AEX94361.1| RNA polymerase beta subunit (chloroplast) [Ruscus aculeatus]
Length = 1073
Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 851 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 910
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 911 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 944
>gi|372481362|gb|AEX94356.1| RNA polymerase beta subunit (chloroplast) [Calibanus hookerii]
Length = 1073
Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 851 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 910
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 911 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 944
>gi|296936663|gb|ADH94335.1| RNA polymerase beta subunit [Syzygium cumini]
Length = 1072
Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
+QTANP + DG+ G+PF++ V+
Sbjct: 910 SQQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 943
>gi|376008276|gb|AFB18347.1| RNA polymerase beta subunit, partial [Nolina atopocarpa]
Length = 1080
Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 859 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 918
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 919 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 952
>gi|372481378|gb|AEX94364.1| RNA polymerase beta subunit (chloroplast) [Androstephium coeruleum]
Length = 1070
Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 908 SKQTKNPWAFEPEYPGKSRIFDGRTGDPFEQPVL 941
>gi|372481346|gb|AEX94348.1| RNA polymerase beta subunit (chloroplast) [Bowiea volubilis]
Length = 1070
Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIGPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 908 SKQTKNPWVFESEYPGKSRIFDGRTGDPFEQPVL 941
>gi|372481326|gb|AEX94338.1| RNA polymerase beta subunit (chloroplast) [Aphyllanthes
monspeliensis]
Length = 1070
Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGNLLKRHYRIGPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 908 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 941
>gi|372481322|gb|AEX94336.1| RNA polymerase beta subunit (chloroplast) [Eucharis x grandiflora]
Length = 1070
Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 908 SKQTKNPWVFEPEYPGRSRIFDGRTGDPFEQPVL 941
>gi|372481320|gb|AEX94335.1| RNA polymerase beta subunit (chloroplast) [Crinum asiaticum]
Length = 1070
Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 908 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 941
>gi|372481310|gb|AEX94330.1| RNA polymerase beta subunit (chloroplast) [Allium fistulosum]
Length = 1070
Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDILKRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 908 SKQTKNPWVFEPEFPGKSRIFDGRTGDPFEQPVL 941
>gi|372481340|gb|AEX94345.1| RNA polymerase beta subunit (chloroplast) [Kniphofia linearifolia]
Length = 1070
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 908 SKQTQNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 941
>gi|394830967|ref|YP_006503601.1| RNA polymerase beta subunit (chloroplast) [Gossypium robinsonii]
gi|335354659|gb|AEH43275.1| RNA polymerase beta subunit [Gossypium robinsonii]
Length = 1070
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G +FECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQLFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYQA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGGPFEQPVI 941
>gi|91983984|ref|YP_567068.1| RNA polymerase beta subunit [Vitis vinifera]
gi|122242805|sp|Q0ZJ28.1|RPOB_VITVI RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|91701642|gb|ABE47526.1| RNA polymerase beta subunit [Vitis vinifera]
Length = 1070
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDE+Y+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDEKYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 941
>gi|372481382|gb|AEX94366.1| RNA polymerase beta subunit (chloroplast) [Dichelostemma capitatum]
Length = 1070
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 908 SKQTKNPWAFEPEYPGKSRIFDGRTGDPFEQPVL 941
>gi|372481392|gb|AEX94371.1| RNA polymerase beta subunit (chloroplast) [Xeronema callistemon]
Length = 1070
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLKRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 908 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 941
>gi|372481338|gb|AEX94344.1| RNA polymerase beta subunit (chloroplast) [Haworthia cymbiformis]
Length = 1070
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIVPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 908 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 941
>gi|372481318|gb|AEX94334.1| RNA polymerase beta subunit (chloroplast) [Amaryllis belladonna]
Length = 1070
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 908 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 941
>gi|372481312|gb|AEX94331.1| RNA polymerase beta subunit (chloroplast) [Allium cepa]
Length = 1070
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDILKRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 908 SKQTKNPWVFEPEFPGKSRIFDGRTGDPFEQPVL 941
>gi|386800829|ref|YP_006303483.1| RNA polymerase beta subunit (chloroplast) [Gossypium gossypioides]
gi|329317063|gb|AEB90422.1| RNA polymerase beta subunit (chloroplast) [Gossypium gossypioides]
Length = 1070
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G +FECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQLFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYQA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGGPFEQPVI 941
>gi|372481334|gb|AEX94342.1| RNA polymerase beta subunit (chloroplast) [Aloe vera]
Length = 1070
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIVPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 908 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 941
>gi|372481328|gb|AEX94339.1| RNA polymerase beta subunit (chloroplast) [Asparagus officinalis]
gi|372481330|gb|AEX94340.1| RNA polymerase beta subunit (chloroplast) [Asparagus asparagoides]
Length = 1070
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRVAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 908 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 941
>gi|108802635|ref|YP_636291.1| RNA polymerase beta subunit [Eucalyptus globulus subsp. globulus]
gi|88909138|sp|Q49L06.1|RPOB_EUCGG RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|60460801|gb|AAX21021.1| RNA polymerase beta subunit [Eucalyptus globulus subsp. globulus]
Length = 1072
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
+QTANP + DG+ G+PF++ V+
Sbjct: 910 SQQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 943
>gi|326457119|gb|ADZ74382.1| RNA polymerase beta subunit [Gossypium bickii]
gi|326457468|gb|ADZ74727.1| RNA polymerase beta subunit [Gossypium sturtianum]
Length = 1070
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G +FECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQLFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYQA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGGPFEQPVI 941
>gi|139389088|ref|YP_001123806.1| RNA polymerase beta subunit [Nasturtium officinale]
gi|158513992|sp|A4QLS5.1|RPOB_NASOF RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|134287011|dbj|BAF50630.1| RNA polymerase beta subunit [Nasturtium officinale]
Length = 1072
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LYKA
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYKA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 910 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 943
>gi|394830791|ref|YP_006503435.1| RNA polymerase beta subunit (chloroplast) [Gossypium
capitis-viridis]
gi|335354491|gb|AEH43109.1| RNA polymerase beta subunit (chloroplast) [Gossypium
capitis-viridis]
Length = 1070
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G +FECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQLFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYQA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGGPFEQPVI 941
>gi|372290924|ref|YP_005087685.1| RNA polymerase beta subunit (chloroplast) [Gossypium raimondii]
gi|318084642|gb|ADV39114.1| RNA polymerase beta subunit (chloroplast) [Gossypium raimondii]
Length = 1070
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G +FECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQLFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYQA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGGPFEQPVI 941
>gi|325210922|ref|YP_004285996.1| RNA polymerase beta subunit [Gossypium thurberi]
gi|372291475|ref|YP_005088368.1| RNA polymerase beta subunit (chloroplast) [Gossypium herbaceum
subsp. africanum]
gi|372291849|ref|YP_005088991.1| RNA polymerase beta subunit (chloroplast) [Gossypium arboreum]
gi|290775784|gb|ADD62280.1| RNA polymerase beta subunit [Gossypium thurberi]
gi|318084308|gb|ADV38784.1| RNA polymerase beta subunit (chloroplast) [Gossypium arboreum]
gi|318084476|gb|ADV38950.1| RNA polymerase beta subunit (chloroplast) [Gossypium herbaceum
subsp. africanum]
gi|326457207|gb|ADZ74469.1| RNA polymerase beta subunit [Gossypium herbaceum]
gi|326457294|gb|ADZ74555.1| RNA polymerase beta subunit [Gossypium longicalyx]
Length = 1070
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G +FECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQLFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYQA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGGPFEQPVI 941
>gi|295136939|ref|YP_003587772.1| RNA polymerase beta subunit [Lathyrus sativus]
gi|293338661|gb|ADE43633.1| RNA polymerase beta subunit (chloroplast) [Lathyrus sativus]
Length = 1067
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G I ECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 845 VDMVFNPLGVPSRMNVGQILECSLGLAGSMLNRHYRIAPFDERYEQEASRKLVFSELYEA 904
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT+NP + DG+ GNPF++ V+
Sbjct: 905 SKQTSNPWIFEPEYPGKSRIFDGRTGNPFEQPVI 938
>gi|309322441|ref|YP_003933954.1| RNA polymerase beta subunit [Eucalyptus grandis]
gi|308223275|gb|ADO23583.1| RNA polymerase beta subunit [Eucalyptus grandis]
Length = 1072
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
+QTANP + DG+ G+PF++ V+
Sbjct: 910 SQQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 943
>gi|91214141|ref|YP_538763.1| RNA polymerase beta subunit [Glycine max]
gi|88984774|sp|Q8HVY5.2|RPOB_SOYBN RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|83595742|gb|ABC25123.1| RNA polymerase beta subunit [Glycine max]
Length = 1070
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 46/91 (50%), Positives = 57/91 (62%), Gaps = 23/91 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGMLERHYRITPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKE 93
KQT+NP K DG+ GN FK+
Sbjct: 908 SKQTSNPWIFEPEYPGKSKIFDGRTGNSFKQ 938
>gi|376008227|gb|AFB18323.1| RNA polymerase beta subunit, partial [Asparagus officinalis]
Length = 1072
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 851 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRVAPFDERYEQEASRKLVFSELYEA 910
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 911 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 944
>gi|372481358|gb|AEX94354.1| RNA polymerase beta subunit (chloroplast) [Cordyline australis]
Length = 1070
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 908 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 941
>gi|372481354|gb|AEX94352.1| RNA polymerase beta subunit (chloroplast) [Oziroe biflora]
Length = 1070
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIGPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 908 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 941
>gi|372481344|gb|AEX94347.1| RNA polymerase beta subunit (chloroplast) [Phormium tenax]
Length = 1070
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 908 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 941
>gi|372481332|gb|AEX94341.1| RNA polymerase beta subunit (chloroplast) [Hemiphylacus
alatostylus]
Length = 1070
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRVAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 908 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 941
>gi|15778187|gb|AAL07334.1| rpoB [Glycine max]
Length = 1070
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 46/91 (50%), Positives = 57/91 (62%), Gaps = 23/91 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGMLERHYRITPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKE 93
KQT+NP K DG+ GN FK+
Sbjct: 908 SKQTSNPWIFEPEYPGKSKIFDGRTGNSFKQ 938
>gi|394830618|ref|YP_006503269.1| RNA polymerase beta subunit (chloroplast) [Gossypium incanum]
gi|394830705|ref|YP_006503352.1| RNA polymerase beta subunit (chloroplast) [Gossypium somalense]
gi|394830880|ref|YP_006503518.1| RNA polymerase beta subunit (chloroplast) [Gossypium areysianum]
gi|326457380|gb|ADZ74640.1| RNA polymerase beta subunit [Gossypium stocksii]
gi|335354323|gb|AEH42943.1| RNA polymerase beta subunit [Gossypium incanum]
gi|335354407|gb|AEH43026.1| RNA polymerase beta subunit [Gossypium somalense]
gi|335354575|gb|AEH43192.1| RNA polymerase beta subunit (chloroplast) [Gossypium areysianum]
Length = 1070
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G +FECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQLFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYQA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGGPFEQPVI 941
>gi|66876485|gb|AAY58031.1| RpoB [Cuscuta japonica]
Length = 456
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 48/104 (46%), Positives = 62/104 (59%), Gaps = 25/104 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+ R ++D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 264 PYLQDGR--SVDLVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASR 321
Query: 63 KLVLSKLYKACKQTANP----------CKTLDGQMGNPFKEHVL 96
K+V S+LY+A KQTANP + DG+ GN F+ VL
Sbjct: 322 KIVFSELYEASKQTANPWAFEPEYPGKSRIFDGRTGNTFEHPVL 365
>gi|91208894|ref|YP_538927.1| RNA polymerase beta subunit [Gossypium hirsutum]
gi|372291377|ref|YP_005088272.1| RNA polymerase beta subunit (chloroplast) [Gossypium tomentosum]
gi|372291765|ref|YP_005088908.1| RNA polymerase beta subunit (chloroplast) [Gossypium mustelinum]
gi|109903858|sp|Q2L8Z9.1|RPOB_GOSHI RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|85687408|gb|ABC73620.1| RNA polymerase beta subunit [Gossypium hirsutum]
gi|318084560|gb|ADV39033.1| RNA polymerase beta subunit (chloroplast) [Gossypium mustelinum]
gi|318084728|gb|ADV39199.1| RNA polymerase beta subunit (chloroplast) [Gossypium tomentosum]
gi|329317147|gb|AEB90505.1| RNA polymerase beta subunit (chloroplast) [Gossypium hirsutum]
gi|329317231|gb|AEB90588.1| RNA polymerase beta subunit (chloroplast) [Gossypium hirsutum]
gi|329317315|gb|AEB90671.1| RNA polymerase beta subunit (chloroplast) [Gossypium barbadense]
gi|329317399|gb|AEB90754.1| RNA polymerase beta subunit (chloroplast) [Gossypium barbadense]
gi|329317483|gb|AEB90837.1| RNA polymerase beta subunit (chloroplast) [Gossypium barbadense]
Length = 1070
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G +FECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQLFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYQA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGGPFEQPVI 941
>gi|326457031|gb|ADZ74295.1| RNA polymerase beta subunit [Gossypium anomalum]
Length = 1070
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G +FECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQLFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYQA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGGPFEQPVI 941
>gi|372481324|gb|AEX94337.1| RNA polymerase beta subunit (chloroplast) [Scadoxus cinnabarinus]
Length = 1070
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 908 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 941
>gi|119368491|ref|YP_913179.1| RNA polymerase beta subunit [Gossypium barbadense]
gi|125987642|sp|A0ZZ27.1|RPOB_GOSBA RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|119224853|dbj|BAF41239.1| RNA polymerase beta subunit [Gossypium barbadense]
Length = 1070
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G +FECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQLFECSLGLAGSLLDRHHRIAPFDERYEQEASRKLVFSELYQA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGGPFEQPVI 941
>gi|376008279|gb|AFB18348.1| RNA polymerase beta subunit, partial [Phormium tenax]
Length = 1074
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 853 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 912
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 913 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 946
>gi|372481336|gb|AEX94343.1| RNA polymerase beta subunit (chloroplast) [Asphodeline damascena]
Length = 1070
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 908 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 941
>gi|372481298|gb|AEX94324.1| RNA polymerase beta subunit (chloroplast) [Anemarrhena
asphodeloides]
Length = 1070
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 908 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 941
>gi|372291023|ref|YP_005087781.1| RNA polymerase beta subunit (chloroplast) [Gossypium darwinii]
gi|318084391|gb|ADV38866.1| RNA polymerase beta subunit (chloroplast) [Gossypium darwinii]
Length = 1070
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G +FECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQLFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYQA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGGPFEQPVI 941
>gi|122893982|ref|YP_001004178.1| RNA polymerase beta subunit [Ranunculus macranthus]
gi|69216920|gb|AAZ03994.1| RNA polymerase beta chain [Ranunculus macranthus]
gi|85540796|gb|ABC70748.1| RNA polymerase beta subunit [Ranunculus macranthus]
Length = 1070
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGNLLDRHYRISPFDERYEQEASRKLVFSELYQA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ V+
Sbjct: 908 SKQTGNPWVFEPEYPGKSRIFDGRTGDPFEQPVI 941
>gi|159161245|ref|YP_001542523.1| RNA polymerase beta subunit [Cuscuta exaltata]
gi|182676562|sp|A8W3B6.1|RPOB_CUSEX RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|158938670|gb|ABW83687.1| RNA polymerase beta subunit [Cuscuta exaltata]
Length = 1070
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 48/104 (46%), Positives = 62/104 (59%), Gaps = 25/104 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+ R ++D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 840 PYLQDGR--SVDLVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASR 897
Query: 63 KLVLSKLYKACKQTANP----------CKTLDGQMGNPFKEHVL 96
K+V S+LY+A KQTANP + DG+ GN F+ VL
Sbjct: 898 KIVFSELYEASKQTANPWAFEPEYPGKSRIFDGRTGNTFEHPVL 941
>gi|149390346|ref|YP_001294344.1| RNA polymerase beta subunit [Dioscorea elephantipes]
gi|158513762|sp|A6MMJ9.1|RPOB_DIOEL RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|148668038|gb|ABR01422.1| RNA polymerase beta subunit [Dioscorea elephantipes]
Length = 1070
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYSA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 908 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 941
>gi|290489652|gb|ADD31210.1| RNA polymerase beta subunit protein [Trochodendron aralioides]
Length = 1070
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV +LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFPELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 941
>gi|13518436|ref|NP_084796.1| RNA polymerase beta subunit [Lotus japonicus]
gi|23822111|sp|Q9BBS9.1|RPOB_LOTJA RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|13358977|dbj|BAB33194.1| RNA polymerase beta subunit [Lotus japonicus]
Length = 1070
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSELYQA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT+NP + DG+ G PF++ V+
Sbjct: 908 SKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVI 941
>gi|114107125|ref|YP_740109.1| RNA polymerase beta subunit [Daucus carota]
gi|122233840|sp|Q0G9X0.1|RPOB_DAUCA RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|113200900|gb|ABI32416.1| RNA polymerase beta subunit [Daucus carota]
Length = 1070
Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYQA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTA P + DG+ G+PF++ V+
Sbjct: 908 SKQTATPWVFEPEYPGKSRIFDGRTGDPFEQPVI 941
>gi|376008272|gb|AFB18345.1| RNA polymerase beta subunit, partial [Neoastelia spectabilis]
Length = 1075
Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV +LYKA
Sbjct: 853 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLKRHYRIAPFDERYEQEASRKLVFPELYKA 912
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 913 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 946
>gi|189162263|ref|YP_001936509.1| RNA polymerase beta subunit [Fagopyrum esculentum subsp.
ancestrale]
gi|166065349|gb|ABY79724.1| RNA polymerase beta subunit [Fagopyrum esculentum subsp.
ancestrale]
Length = 1070
Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLGRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 941
>gi|161622302|ref|YP_001586174.1| RNA polymerase beta subunit [Acorus americanus]
gi|182676548|sp|A9LYH7.1|RPOB_ACOAM RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|160369845|gb|ABX38736.1| RNA polymerase beta subunit [Acorus americanus]
Length = 1083
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 861 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 920
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ VL
Sbjct: 921 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVL 954
>gi|115604926|ref|YP_784378.1| RNA polymerase beta subunit [Drimys granadensis]
gi|122164449|sp|Q06H05.1|RPOB_DRIGR RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|112032654|gb|ABH88289.1| RNA polymerase beta subunit [Drimys granadensis]
Length = 1071
Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV +LY+A
Sbjct: 849 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFPELYEA 908
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 909 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 942
>gi|376008229|gb|AFB18324.1| RNA polymerase beta subunit, partial [Belosynapsis ciliata]
Length = 1085
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 863 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSQLYEA 922
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ GNPF++ VL
Sbjct: 923 SKQTKNPWVFEPEYPGKSRIFDGRTGNPFEQPVL 956
>gi|435856365|ref|YP_007317240.1| RNA polymerase beta subunit (chloroplast) [Camellia sinensis]
gi|430728264|gb|AGA55588.1| RNA polymerase beta subunit (chloroplast) [Camellia sinensis]
Length = 1070
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ VL
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVL 941
>gi|376008239|gb|AFB18329.1| RNA polymerase beta subunit [Molineria capitulata]
Length = 1070
Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF + VL
Sbjct: 908 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFGQPVL 941
>gi|449326697|gb|AGE93276.1| RNA polymerase beta subunit [Chamaedorea seifrizii]
Length = 1068
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 846 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 905
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
CKQT NP + DG+ G+PF++ VL
Sbjct: 906 CKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 939
>gi|326200273|gb|ADZ52312.1| RNA polymerase beta subunit [Asclepias syriaca]
Length = 1069
Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYQA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ GN F++ VL
Sbjct: 908 SKQTGNPWVFEPEYPGKSRLFDGRTGNAFEQPVL 941
>gi|323149074|ref|YP_004222638.1| RNA polymerase beta subunit [Anthriscus cerefolium]
gi|289645567|gb|ADD13630.1| RNA polymerase beta subunit [Anthriscus cerefolium]
Length = 1070
Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYQA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTA P + DG+ G+PF++ V+
Sbjct: 908 SKQTATPWVFEPEYPGKSRIFDGRTGDPFEQPVI 941
>gi|428697606|ref|YP_007025937.1| RNA polymerase beta subunit [Vaccinium macrocarpon]
gi|374093745|gb|AEY84181.1| RNA polymerase beta subunit (chloroplast) [Vaccinium macrocarpon]
gi|385198173|gb|AFI44091.1| RNA polymerase beta subunit [Vaccinium macrocarpon]
Length = 1068
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 846 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 905
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ VL
Sbjct: 906 SKQTANPWVFEPEYPGKSRLFDGRTGDPFEQPVL 939
>gi|156573716|gb|ABU85190.1| RNA polymerase beta subunit [Anethum graveolens]
Length = 1070
Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYQA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTA P + DG+ G+PF++ V+
Sbjct: 908 SKQTATPWVFEPEYPGKSRIFDGRTGDPFEQPVI 941
>gi|376008235|gb|AFB18327.1| RNA polymerase beta subunit, partial [Chamaedorea seifrizii]
Length = 1079
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 857 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 916
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
CKQT NP + DG+ G+PF++ VL
Sbjct: 917 CKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 950
>gi|376008286|gb|AFB18351.1| RNA polymerase beta subunit, partial [Ravenea hildebrandtii]
Length = 1076
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 854 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 913
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
CKQT NP + DG+ G+PF++ VL
Sbjct: 914 CKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 947
>gi|292559501|ref|YP_003540923.1| DNA-directed RNA polymerase beta chain [Phoenix dactylifera]
gi|290790909|gb|ADD63164.1| DNA-directed RNA polymerase beta chain (chloroplast) [Phoenix
dactylifera]
gi|294620569|gb|ADF28138.1| DNA-directed RNA polymerase beta chain (chloroplast) [Phoenix
dactylifera]
Length = 1068
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 846 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 905
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
CKQT NP + DG+ G+PF++ VL
Sbjct: 906 CKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 939
>gi|383931182|ref|YP_006073096.1| RNA polymerase beta subunit (chloroplast) [Elaeis guineensis]
gi|325305700|gb|ADZ10861.1| RNA polymerase beta subunit (chloroplast) [Elaeis guineensis]
Length = 1068
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 846 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 905
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
CKQT NP + DG+ G+PF++ VL
Sbjct: 906 CKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 939
>gi|149390260|ref|YP_001294090.1| RNA polymerase beta subunit [Chloranthus spicatus]
gi|158513759|sp|A6MMB4.1|RPOB_CHLSC RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|146744180|gb|ABQ43252.1| RNA polymerase beta subunit [Chloranthus spicatus]
Length = 1070
Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV +LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFPELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 941
>gi|186885883|gb|ACC93349.1| RNA polymerase beta subunit [Hesperomannia arbuscula]
Length = 1024
Score = 89.0 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + LDG+ G+PF++ V+
Sbjct: 862 SKQTANPWIFEPESPGKSRILDGRTGDPFEQPVI 895
>gi|156598158|gb|ABU85343.1| RNA polymerase beta subunit [Elaeis oleifera]
Length = 1067
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 845 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 904
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
CKQT NP + DG+ G+PF++ VL
Sbjct: 905 CKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 938
>gi|456061650|ref|YP_007475781.1| RNA polymerase beta subunit [Pseudophoenix vinifera]
gi|449326262|gb|AGE92846.1| RNA polymerase beta subunit [Pseudophoenix vinifera]
Length = 1068
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 846 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 905
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
CKQT NP + DG+ G+PF++ VL
Sbjct: 906 CKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 939
>gi|134093189|ref|YP_001109491.1| RNA polymerase beta subunit [Populus trichocarpa]
gi|158513642|sp|A4GYQ0.1|RPOB_POPTR RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|133712051|gb|ABO36694.1| RNA polymerase beta chain [Populus trichocarpa]
Length = 1070
Score = 89.0 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRVAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ V+
Sbjct: 908 GKQTGNPWVFEPECPGKSRIFDGRTGDPFEQPVI 941
>gi|290489616|gb|ADD31192.1| RNA polymerase beta subunit protein [Meliosma aff. cuneifolia Moore
333]
Length = 1070
Score = 89.0 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANPCK----------TLDGQMGNPFKEHVL 96
KQTANP DG+ G+PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKGIIFDGRTGDPFEQPVI 941
>gi|161784184|ref|YP_001595500.1| RNA polymerase beta subunit [Lemna minor]
gi|182676567|sp|A9L988.1|RPOB_LEMMI RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|88696762|gb|ABD48487.1| RNA polymerase beta subunit [Lemna minor]
Length = 1072
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLNRHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP K DG+ G+PF++ VL
Sbjct: 910 SKQTKNPWVFEPEYPGKSKIFDGRTGDPFEQAVL 943
>gi|449326784|gb|AGE93362.1| RNA polymerase beta subunit [Alpinia zerumbet]
Length = 1073
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 851 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIASFDERYEQEASRKLVFSELYEA 910
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ GNPF++ VL
Sbjct: 911 SKQTKNPWVFEPEYPGKSRIFDGRTGNPFEQPVL 944
>gi|376008288|gb|AFB18352.1| RNA polymerase beta subunit, partial [Renealmia alpinia]
Length = 1078
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 856 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIASFDERYEQEASRKLVFSELYEA 915
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ GNPF++ VL
Sbjct: 916 SKQTKNPWVFEPEYPGKSRIFDGRTGNPFEQPVL 949
>gi|186885961|gb|ACC93388.1| RNA polymerase beta subunit [Syncarpha vestita]
Length = 1016
Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+DI+FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 794 VDIVFNPLGVPSRMNVGQIFESSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 853
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 854 SKQTANPWIFEPESPGKSRIFDGRTGDPFEQPVI 887
>gi|408901751|gb|AFU95590.1| RpoB, partial (chloroplast) [Elaeodendron orientale]
Length = 1000
Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 49/105 (46%), Positives = 63/105 (60%), Gaps = 26/105 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+ R +D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 768 PYLQDGR--TVDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASR 825
Query: 63 KLVLSKLYKACKQTA-NP----------CKTLDGQMGNPFKEHVL 96
KLV S+LY+A KQTA NP + DG+ GNPF++ V+
Sbjct: 826 KLVFSELYEASKQTAXNPWVFEPEYPGKSRIFDGRTGNPFEQPVI 870
>gi|372481314|gb|AEX94332.1| RNA polymerase beta subunit (chloroplast) [Gilliesia graminea]
Length = 1070
Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGALLKKHYRVAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 908 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 941
>gi|377581221|gb|AFB70748.1| DNA-directed RNA polymerase subunit beta, partial (chloroplast)
[Portulacaria afra]
Length = 1053
Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 56/89 (62%), Gaps = 23/89 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 831 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 890
Query: 73 CKQTANP----------CKTLDGQMGNPF 91
KQTANP + DG+ G+PF
Sbjct: 891 SKQTANPWVFEPEYPGKSRIFDGRTGDPF 919
>gi|290489630|gb|ADD31199.1| RNA polymerase beta subunit protein [Bulnesia arborea]
Length = 1070
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+++ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEKEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP K DG+ G+PF++ VL
Sbjct: 908 SKQTANPWVFEPEYPGKSKIFDGRTGDPFEQPVL 941
>gi|159161152|ref|YP_001542439.1| RNA polymerase beta subunit [Ceratophyllum demersum]
gi|182676556|sp|A8SE86.1|RPOB_CERDE RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|148508435|gb|ABQ81442.1| RNA polymerase beta subunit [Ceratophyllum demersum]
gi|227481111|emb|CAP62490.1| RNA polymerase beta subunit [Ceratophyllum demersum]
Length = 1070
Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
ID++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV +LY+A
Sbjct: 848 IDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFPELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT+NP + DG+ G+PF++ V+
Sbjct: 908 SKQTSNPWVFEPEYPGKSRIFDGRTGDPFEQPVI 941
>gi|309322098|ref|YP_003933914.1| RNA polymerase beta subunit [Erodium texanum]
gi|408830193|ref|YP_006883171.1| RNA polymerase beta subunit [Erodium guttatum]
gi|300069191|gb|ADJ66313.1| RNA polymerase beta subunit [Erodium texanum]
Length = 1064
Score = 88.6 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
ID++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+L++A
Sbjct: 904 IDMVFNPLGVPSRMNVGQIFECSLGLAGALLDRHYRVAPFDERYEQEASRKLVFSELHEA 963
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ V+
Sbjct: 964 SKQTGNPWVFEPEYPGKSRIFDGRTGDPFEQPVI 997
>gi|186885875|gb|ACC93345.1| RNA polymerase beta subunit [Gorteria diffusa]
Length = 1024
Score = 88.6 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 62/104 (59%), Gaps = 25/104 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
PF R ID++FNPL VP RMN+G IFE SL RH FDERY+Q+ SR
Sbjct: 794 PFLQDGR--PIDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASR 851
Query: 63 KLVLSKLYKACKQTANP----------CKTLDGQMGNPFKEHVL 96
KLV S+LY+A KQTANP + DG+ G+PF++ V+
Sbjct: 852 KLVFSELYEASKQTANPWIFEPESPGKSRIFDGRTGDPFEQPVI 895
>gi|308742589|gb|ADO33440.1| RNA polymerase beta subunit [Smilax china]
Length = 1060
Score = 88.6 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 47/104 (45%), Positives = 62/104 (59%), Gaps = 25/104 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+F + +D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 830 PYFQDG--TTVDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASR 887
Query: 63 KLVLSKLYKACKQTANP----------CKTLDGQMGNPFKEHVL 96
KLV +LY+A KQT NP + DG+ G+PF++ VL
Sbjct: 888 KLVFPELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 931
>gi|376008244|gb|AFB18331.1| RNA polymerase beta subunit, partial [Ecdeiocolea monostachya]
Length = 1070
Score = 88.6 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 LDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 908 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 941
>gi|139389793|ref|YP_001123454.1| RNA polymerase beta subunit [Crucihimalaya wallichii]
gi|158513964|sp|A4QKS3.1|RPOB_CRUWA RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|134286655|dbj|BAF50278.1| RNA polymerase beta subunit [Crucihimalaya wallichii]
Length = 1072
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 910 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 943
>gi|12644277|sp|P46818.2|RPOB_SINAL RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|5457427|emb|CAB48411.1| RNA polymerase A beta subunit [Sinapis alba]
Length = 1078
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 856 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 915
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 916 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 949
>gi|7525025|ref|NP_051051.1| RNA polymerase beta subunit [Arabidopsis thaliana]
gi|332278246|sp|P50546.4|RPOB_ARATH RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|5881686|dbj|BAA84377.1| RNA polymerase beta subunit [Arabidopsis thaliana]
Length = 1072
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 910 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 943
>gi|377829867|ref|YP_005296092.1| rpoB gene product (chloroplast) [Pentactina rupicola]
gi|371532615|gb|AEX31725.1| RNA polymerase beta subunit (chloroplast) [Pentactina rupicola]
Length = 1070
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 941
>gi|563343|emb|CAA57814.1| RNA polymerase subunit beta [Sinapis alba]
Length = 1078
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 856 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 915
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 916 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 949
>gi|139388086|ref|YP_001123278.1| RNA polymerase beta subunit [Barbarea verna]
gi|158513637|sp|A4QK97.1|RPOB_BARVE RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|134286477|dbj|BAF50102.1| RNA polymerase beta subunit [Barbarea verna]
Length = 1072
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 910 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 943
>gi|139387244|ref|YP_001123365.1| RNA polymerase beta subunit [Capsella bursa-pastoris]
gi|158513957|sp|A4QKI4.1|RPOB_CAPBU RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|134286565|dbj|BAF50189.1| RNA polymerase beta subunit [Capsella bursa-pastoris]
Length = 1072
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 910 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 943
>gi|372450131|ref|YP_005090170.1| rpoB gene product (chloroplast) [Ricinus communis]
gi|339516157|gb|AEJ82547.1| RNA polymerase beta subunit [Ricinus communis]
Length = 1070
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 941
>gi|186885945|gb|ACC93380.1| RNA polymerase beta subunit [Scaevola aemula]
Length = 1027
Score = 88.6 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 805 LDMVFNPLGVPSRMNVGQIFESSLGLAGGFLDRHYRIAPFDERYEQEASRKLVFSELYQA 864
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + LDG+ G+PF++ V+
Sbjct: 865 SKQTANPWVFEPEYPGKSRILDGRTGDPFEQPVI 898
>gi|377819370|ref|YP_005097866.1| RNA polymerase beta subunit (chloroplast) [Colocasia esculenta]
gi|340536631|gb|AEK48398.1| RNA polymerase beta subunit (chloroplast) [Colocasia esculenta]
gi|340536718|gb|AEK48484.1| RNA polymerase beta subunit (chloroplast) [Colocasia esculenta]
Length = 1072
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLNRHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP K DG+ G+PF++ VL
Sbjct: 910 SKQTKNPWVFEPEYPGKSKIFDGRTGDPFEQPVL 943
>gi|346578183|ref|YP_004841775.1| RNA polymerase beta subunit [Cucumis melo subsp. melo]
gi|344030483|gb|AEM76884.1| RNA polymerase beta subunit [Cucumis melo subsp. melo]
Length = 1070
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 64/104 (61%), Gaps = 25/104 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+ + R +D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 840 PYLQNGR--PVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASR 897
Query: 63 KLVLSKLYKACKQTANP----------CKTLDGQMGNPFKEHVL 96
KLV S+LY+A KQTA+P + DG+ GNPF++ V+
Sbjct: 898 KLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPVI 941
>gi|342316113|ref|YP_004769622.1| RNA polymerase beta subunit (chloroplast) [Spirodela polyrhiza]
gi|341834063|gb|AEK94334.1| RNA polymerase beta subunit [Spirodela polyrhiza]
Length = 1072
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLNRHYRIGPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP K DG+ G+PF++ VL
Sbjct: 910 SKQTKNPWVFEPEYPGKSKIFDGRTGDPFEQPVL 943
>gi|290489644|gb|ADD31206.1| RNA polymerase beta subunit protein [Oxalis latifolia]
Length = 1070
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
ID++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 IDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ ++
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPII 941
>gi|196122267|gb|ACG69790.1| RNA polymerase beta subunit [Capsicum frutescens]
Length = 147
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 64/104 (61%), Gaps = 25/104 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+ R ++D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 13 PYLQDGR--SVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASR 70
Query: 63 KLVLSKLYKACKQTANP----------CKTLDGQMGNPFKEHVL 96
KLV S+LY+A KQT+NP + DG+ GNPF++ V+
Sbjct: 71 KLVFSELYEASKQTSNPWVFEPEYPGKSRIFDGRTGNPFEQPVI 114
>gi|186885965|gb|ACC93390.1| RNA polymerase beta subunit [Trichocline boecheri]
Length = 1030
Score = 88.6 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 808 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIGPFDERYEQEASRKLVFSELYEA 867
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ VL
Sbjct: 868 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVL 901
>gi|326909380|ref|YP_004327649.1| RNA polymerase beta subunit [Hevea brasiliensis]
gi|308523494|gb|ADO33544.1| RNA polymerase beta subunit [Hevea brasiliensis]
Length = 1070
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLTGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 941
>gi|372481390|gb|AEX94370.1| RNA polymerase beta subunit (chloroplast) [Xanthorrhoea preissii]
Length = 1070
Score = 88.2 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
K+T NP + DG+ G+PF++ VL
Sbjct: 908 SKKTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 941
>gi|158518592|sp|Q4VZP1.2|RPOB_CUCSA RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|74027093|gb|AAZ94643.1| RNA polymerase beta subunit [Cucumis sativus]
gi|115432796|gb|ABI97409.1| RNA polymerase beta subunit [Cucumis sativus]
gi|115498295|gb|ABI98737.1| RNA polymerase beta subunit [Cucumis sativus]
Length = 1070
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 64/104 (61%), Gaps = 25/104 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+ + R +D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 840 PYLQNGR--PVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASR 897
Query: 63 KLVLSKLYKACKQTANP----------CKTLDGQMGNPFKEHVL 96
KLV S+LY+A KQTA+P + DG+ GNPF++ V+
Sbjct: 898 KLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPVI 941
>gi|186885845|gb|ACC93330.1| RNA polymerase beta subunit [Dimorphotheca sinuata]
Length = 1024
Score = 88.2 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ VL
Sbjct: 862 SKQTANPWIFEPESPGKSRIFDGRTGDPFEQPVL 895
>gi|406365329|gb|AFS35502.1| RNA polymerase beta subunit, partial [Fragaria pentaphylla]
Length = 248
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 31 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 90
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 91 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 124
>gi|449326610|gb|AGE93190.1| RNA polymerase beta subunit [Calectasia narragara]
Length = 1074
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP K LDG+ G+PF++ VL
Sbjct: 910 SKQTKNPWVFEPEYPGKSKILDGRTGDPFEQPVL 943
>gi|194132101|gb|ACF33355.1| RNA polymerase beta subunit [Gonystylus bancanus]
Length = 1072
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 910 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 943
>gi|158514217|sp|A6MMT6.2|RPOB_ILLOL RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
Length = 1070
Score = 88.2 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL +P RMN+G +FECS+ RH FDERY+Q+ SRKLV +LYKA
Sbjct: 848 VDMVFNPLGIPSRMNVGQMFECSIGLAGNLLNRHYRIIPFDERYEQEASRKLVFPELYKA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 941
>gi|376008256|gb|AFB18337.1| RNA polymerase beta subunit, partial [Hosta ventricosa]
Length = 1077
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 63/104 (60%), Gaps = 25/104 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+F + +D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 848 PYFQDG--TPVDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASR 905
Query: 63 KLVLSKLYKACKQTANP----------CKTLDGQMGNPFKEHVL 96
KLV S+LY+A KQT NP K DG+ G+PF++ VL
Sbjct: 906 KLVFSELYEASKQTKNPWVFEPEYPGKSKIFDGRTGDPFEQPVL 949
>gi|114804257|ref|YP_762253.1| RNA polymerase beta subunit [Morus indica]
gi|122166813|sp|Q09X25.1|RPOB_MORIN RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|78100309|gb|ABB20950.1| RNA polymerase beta subunit [Morus indica]
Length = 1070
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 941
>gi|169794065|ref|YP_001718429.1| RNA polymerase beta subunit [Manihot esculenta]
gi|157695877|gb|ABV66146.1| RNA polymerase beta subunit [Manihot esculenta]
Length = 1070
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 941
>gi|149390434|ref|YP_001294262.1| RNA polymerase beta subunit [Illicium oligandrum]
gi|147917387|gb|ABQ52511.1| RNA polymerase beta subunit [Illicium oligandrum]
Length = 1062
Score = 88.2 bits (217), Expect = 6e-16, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL +P RMN+G +FECS+ RH FDERY+Q+ SRKLV +LYKA
Sbjct: 840 VDMVFNPLGIPSRMNVGQMFECSIGLAGNLLNRHYRIIPFDERYEQEASRKLVFPELYKA 899
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 900 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 933
>gi|372481342|gb|AEX94346.1| RNA polymerase beta subunit (chloroplast) [Doryanthes palmeri]
Length = 1070
Score = 88.2 bits (217), Expect = 6e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV +LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFPELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 908 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 941
>gi|156598653|gb|ABU85582.1| RNA polymerase beta subunit [Scaevola aemula]
Length = 1071
Score = 88.2 bits (217), Expect = 6e-16, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 849 LDMVFNPLGVPSRMNVGQIFESSLGLAGGFLDRHYRIAPFDERYEQEASRKLVFSELYQA 908
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + LDG+ G+PF++ V+
Sbjct: 909 SKQTANPWVFEPEYPGKSRILDGRTGDPFEQPVI 942
>gi|408901737|gb|AFU95583.1| RpoB, partial (chloroplast) [Byrsonima crassifolia]
Length = 1108
Score = 88.2 bits (217), Expect = 6e-16, Method: Composition-based stats.
Identities = 47/95 (49%), Positives = 60/95 (63%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LYKA
Sbjct: 884 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYKA 943
Query: 73 CKQTA-NP----------CKTLDGQMGNPFKEHVL 96
KQTA NP + DG+ G+PF++ V+
Sbjct: 944 SKQTAXNPWVFEPEYPGKSRIFDGRTGDPFEQPVI 978
>gi|167391797|ref|YP_001671675.1| RNA polymerase beta subunit [Carica papaya]
gi|166344124|gb|ABY86774.1| RNA polymerase beta chain [Carica papaya]
Length = 1070
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQESSRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 941
>gi|183217728|ref|YP_001837347.1| RNA polymerase beta subunit [Guizotia abyssinica]
gi|179366243|gb|ACB86514.1| RNA polymerase beta subunit [Guizotia abyssinica]
Length = 1060
Score = 88.2 bits (217), Expect = 6e-16, Method: Composition-based stats.
Identities = 46/96 (47%), Positives = 60/96 (62%), Gaps = 23/96 (23%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLY 70
S +D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY
Sbjct: 836 SPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELY 895
Query: 71 KACKQTANP----------CKTLDGQMGNPFKEHVL 96
+A KQTANP + DG+ G+PF++ V+
Sbjct: 896 EASKQTANPWIFEPESPGKSRIFDGRTGDPFEQPVI 931
>gi|290489636|gb|ADD31202.1| RNA polymerase beta subunit protein [Ficus sp. Moore 315]
Length = 1070
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 941
>gi|372481388|gb|AEX94369.1| RNA polymerase beta subunit (chloroplast) [Triteleia hyacinthina]
Length = 1070
Score = 87.8 bits (216), Expect = 7e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
QT NP + DG+ G+PF++ VL
Sbjct: 908 SNQTKNPWAFEPEYPGKSRIFDGRTGDPFEQPVL 941
>gi|408901783|gb|AFU95606.1| RpoB, partial (chloroplast) [Medusagyne oppositifolia]
Length = 1108
Score = 87.8 bits (216), Expect = 7e-16, Method: Composition-based stats.
Identities = 47/95 (49%), Positives = 60/95 (63%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 884 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 943
Query: 73 CKQTA-NP----------CKTLDGQMGNPFKEHVL 96
KQTA NP + DG+ G+PF++ VL
Sbjct: 944 SKQTAXNPWVFDPEYPGKSRIFDGRTGDPFEQPVL 978
>gi|372481374|gb|AEX94362.1| RNA polymerase beta subunit (chloroplast) [Sansevieria trifasciata]
Length = 1073
Score = 87.8 bits (216), Expect = 7e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 851 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 910
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQ NP + DG+ G+PF++ VL
Sbjct: 911 SKQIKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 944
>gi|297837963|ref|XP_002886863.1| hypothetical protein ARALYDRAFT_893971 [Arabidopsis lyrata subsp.
lyrata]
gi|297332704|gb|EFH63122.1| hypothetical protein ARALYDRAFT_893971 [Arabidopsis lyrata subsp.
lyrata]
Length = 1763
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 910 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 943
>gi|290489626|gb|ADD31197.1| RNA polymerase beta subunit protein [Ximenia americana]
Length = 1075
Score = 87.8 bits (216), Expect = 7e-16, Method: Composition-based stats.
Identities = 46/93 (49%), Positives = 58/93 (62%), Gaps = 23/93 (24%)
Query: 27 DIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKAC 73
D+ FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 854 DMGFNPLGVPSRMNVGQIFECSLGLAGDLLNRHYRIVPFDERYEQEASRKLVFSELYEAS 913
Query: 74 KQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 914 KQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 946
>gi|374249535|ref|YP_005088805.1| RNA polymerase beta subunit (chloroplast) [Millettia pinnata]
gi|356474824|gb|AET11342.1| RNA polymerase beta subunit (chloroplast) [Millettia pinnata]
Length = 1076
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 854 VDMVFNPLGVPSRMNVGQIFECSLGLAGSMLDRHYRIAPFDERYEQEASRKLVFSELYEA 913
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT+NP + DG+ GN FK+ V+
Sbjct: 914 SKQTSNPWIFEPEYPGKSRIFDGRTGNSFKQPVI 947
>gi|186885787|gb|ACC93301.1| RNA polymerase beta subunit [Acicarpha spathulata]
Length = 1026
Score = 87.8 bits (216), Expect = 8e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 804 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 863
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 864 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 897
>gi|186885941|gb|ACC93378.1| RNA polymerase beta subunit [Relhania calycina]
Length = 998
Score = 87.8 bits (216), Expect = 8e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 862 SKQTANPWIFEPESPGKSRIFDGRTGDPFEQPVI 895
>gi|186885859|gb|ACC93337.1| RNA polymerase beta subunit [Erigeron tenuis]
Length = 1024
Score = 87.8 bits (216), Expect = 8e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 862 SKQTANPWVFEPESPGKSRIFDGRTGDPFEQPVI 895
>gi|186885855|gb|ACC93335.1| RNA polymerase beta subunit [Echinops ritro]
Length = 1024
Score = 87.8 bits (216), Expect = 8e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 862 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 895
>gi|186885839|gb|ACC93327.1| RNA polymerase beta subunit [Dasyphyllum reticulatum]
Length = 1024
Score = 87.8 bits (216), Expect = 8e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 862 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 895
>gi|186885817|gb|ACC93316.1| RNA polymerase beta subunit [Carthamus tinctorius]
Length = 1024
Score = 87.8 bits (216), Expect = 8e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 862 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 895
>gi|186885809|gb|ACC93312.1| RNA polymerase beta subunit [Barnadesia spinosa]
Length = 1024
Score = 87.8 bits (216), Expect = 8e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 862 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 895
>gi|186885805|gb|ACC93310.1| RNA polymerase beta subunit [Atractylis cancellata]
Length = 1024
Score = 87.8 bits (216), Expect = 8e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAAFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 862 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 895
>gi|186885819|gb|ACC93317.1| RNA polymerase beta subunit [Centaurea melitensis]
Length = 1024
Score = 87.8 bits (216), Expect = 8e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 862 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 895
>gi|186885861|gb|ACC93338.1| RNA polymerase beta subunit [Felicia heterophylla]
Length = 1024
Score = 87.8 bits (216), Expect = 8e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 862 SKQTANPWVFEPESPGKSRIFDGRTGDPFEQPVI 895
>gi|186885963|gb|ACC93389.1| RNA polymerase beta subunit [Tarchonanthus camphoratus]
Length = 1024
Score = 87.8 bits (216), Expect = 8e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 862 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 895
>gi|186885931|gb|ACC93373.1| RNA polymerase beta subunit [Platycarphella carlinoides]
Length = 1024
Score = 87.8 bits (216), Expect = 8e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 862 SKQTANPWIFEPESPGKSRIFDGRTGDPFEQPVI 895
>gi|186885823|gb|ACC93319.1| RNA polymerase beta subunit [Chaetanthera pentacaenoides]
Length = 1028
Score = 87.8 bits (216), Expect = 8e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 806 VDMVFNPLGVPSRMNVGQIFESSLGLAGVLLDRHYRIAPFDERYEQEASRKLVFSELYEA 865
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 866 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 899
>gi|186885815|gb|ACC93315.1| RNA polymerase beta subunit [Brachylaena elliptica]
gi|186885915|gb|ACC93365.1| RNA polymerase beta subunit [Oldenburgia grandis]
Length = 1024
Score = 87.8 bits (216), Expect = 8e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 862 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 895
>gi|186885929|gb|ACC93372.1| RNA polymerase beta subunit [Pertya scandens]
Length = 1024
Score = 87.8 bits (216), Expect = 8e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 862 SKQTANPWIFEPEYPGKSRIFDGRTGDPFEQPVI 895
>gi|186885947|gb|ACC93381.1| RNA polymerase beta subunit [Scolymus maculatus]
Length = 1023
Score = 87.8 bits (216), Expect = 9e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 801 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 860
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 861 SKQTANPWIFEPESPGKSRIFDGRTGDPFEQPVI 894
>gi|186885917|gb|ACC93366.1| RNA polymerase beta subunit [Oncosiphon grandiflorum]
Length = 1024
Score = 87.8 bits (216), Expect = 9e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 862 SKQTANPWIFEPESPGKSRIFDGRTGDPFEQPVI 895
>gi|186885899|gb|ACC93357.1| RNA polymerase beta subunit [Leucomeris spectabilis]
Length = 1026
Score = 87.8 bits (216), Expect = 9e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 804 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 863
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 864 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 897
>gi|186885887|gb|ACC93351.1| RNA polymerase beta subunit [Hoplophyllum spinosum]
Length = 1009
Score = 87.8 bits (216), Expect = 9e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 862 SKQTANPWIFEPEFPGKSRIFDGRTGDPFEQPVI 895
>gi|186885877|gb|ACC93346.1| RNA polymerase beta subunit [Gundelia tournefortii]
Length = 1024
Score = 87.8 bits (216), Expect = 9e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 862 SKQTANPWIFEPESPGKSRIFDGRTGDPFEQPVI 895
>gi|186885837|gb|ACC93326.1| RNA polymerase beta subunit [Cyclolepis genistoides]
Length = 1028
Score = 87.8 bits (216), Expect = 9e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 806 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 865
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 866 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 899
>gi|186885939|gb|ACC93377.1| RNA polymerase beta subunit [Psacalium paucicapitatum]
Length = 1024
Score = 87.4 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 862 SKQTANPWIFEPESPGKSRIFDGRTGDPFEQPVI 895
>gi|186885937|gb|ACC93376.1| RNA polymerase beta subunit [Proustia cuneifolia]
Length = 1028
Score = 87.4 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 806 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 865
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 866 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 899
>gi|186885927|gb|ACC93371.1| RNA polymerase beta subunit [Perezia purpurata]
Length = 1028
Score = 87.4 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 806 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 865
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 866 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 899
>gi|186885923|gb|ACC93369.1| RNA polymerase beta subunit [Pachylaena atriplicifolia]
Length = 1028
Score = 87.4 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 806 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 865
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 866 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 899
>gi|186885909|gb|ACC93362.1| RNA polymerase beta subunit [Mutisia retrorsa]
Length = 1028
Score = 87.4 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 806 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 865
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 866 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 899
>gi|186885901|gb|ACC93358.1| RNA polymerase beta subunit [Liabellum palmeri]
Length = 1024
Score = 87.4 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 862 SKQTANPWIFEPESPGKSRIFDGRTGDPFEQPVI 895
>gi|186885897|gb|ACC93356.1| RNA polymerase beta subunit [Leucheria thermarum]
Length = 1028
Score = 87.4 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 806 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 865
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 866 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 899
>gi|186885873|gb|ACC93344.1| RNA polymerase beta subunit [Gongylolepis benthamiana]
Length = 1028
Score = 87.4 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 806 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 865
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 866 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 899
>gi|186885803|gb|ACC93309.1| RNA polymerase beta subunit [Arctotis hirsuta]
Length = 1024
Score = 87.4 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 862 SKQTANPWIFEPESPGKSRIFDGRTGDPFEQPVI 895
>gi|186885797|gb|ACC93306.1| RNA polymerase beta subunit [Ainsliaea apiculata]
Length = 1024
Score = 87.4 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 862 SKQTANPWIFEPEYPGKSRIFDGRTGDPFEQPVI 895
>gi|186885795|gb|ACC93305.1| RNA polymerase beta subunit [Adenocaulon bicolor]
gi|186885903|gb|ACC93359.1| RNA polymerase beta subunit [Lophopappus cuneatus]
Length = 1028
Score = 87.4 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 806 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 865
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 866 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 899
>gi|186885785|gb|ACC93300.1| RNA polymerase beta subunit [Achillea millefolium]
Length = 1024
Score = 87.4 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 862 SKQTANPWIFEPESPGKSRIFDGRTGDPFEQPVI 895
>gi|376008264|gb|AFB18341.1| RNA polymerase beta subunit, partial [Kingia australis]
gi|392841330|gb|AFM83285.1| RNA polymerase beta subunit (chloroplast) [Kingia australis]
Length = 1070
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKKHYRISPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + LDG+ G+PF++ VL
Sbjct: 908 SKQTKNPWVFEPEYPGKSRILDGRTGDPFEQPVL 941
>gi|456061878|ref|YP_007476039.1| RNA polymerase beta subunit [Dasypogon bromeliifolius]
gi|376008242|gb|AFB18330.1| RNA polymerase beta subunit [Dasypogon bromeliifolius]
gi|449326523|gb|AGE93104.1| RNA polymerase beta subunit [Dasypogon bromeliifolius]
Length = 1070
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + LDG+ G+PF++ VL
Sbjct: 908 SKQTKNPWVFEPEYPGKSRILDGRTGDPFEQPVL 941
>gi|186885907|gb|ACC93361.1| RNA polymerase beta subunit [Macledium zeyheri]
Length = 1024
Score = 87.4 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 862 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 895
>gi|186885789|gb|ACC93302.1| RNA polymerase beta subunit [Acourtia turbinata]
Length = 1028
Score = 87.4 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 806 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 865
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 866 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 899
>gi|186885949|gb|ACC93382.1| RNA polymerase beta subunit [Senecio polypodioides]
Length = 1024
Score = 87.4 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 862 SKQTANPWIFEPESPGKSRIFDGRTGDPFEQPVI 895
>gi|186885913|gb|ACC93364.1| RNA polymerase beta subunit [Nouelia insignis]
Length = 1026
Score = 87.4 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 804 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 863
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 864 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 897
>gi|186885885|gb|ACC93350.1| RNA polymerase beta subunit [Heterolepis aliena]
Length = 1024
Score = 87.4 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 862 SKQTANPWIFEPESPGKSRIFDGRTGDPFEQPVI 895
>gi|186885849|gb|ACC93332.1| RNA polymerase beta subunit [Dolichlasium lagascae]
Length = 1028
Score = 87.4 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 806 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 865
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 866 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 899
>gi|186885827|gb|ACC93321.1| RNA polymerase beta subunit [Chimantaea humilis]
gi|186885959|gb|ACC93387.1| RNA polymerase beta subunit [Stomatochaeta condensata]
Length = 1026
Score = 87.4 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 804 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 863
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 864 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 897
>gi|186885973|gb|ACC93394.1| RNA polymerase beta subunit [Wunderlichia mirabilis]
Length = 1026
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 804 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 863
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 864 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 897
>gi|186885967|gb|ACC93391.1| RNA polymerase beta subunit [Trixis divaricata]
Length = 1028
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 806 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 865
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 866 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 899
>gi|186885957|gb|ACC93386.1| RNA polymerase beta subunit [Stokesia laevis]
Length = 1024
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 862 SKQTANPWIFEPESPGKSRIFDGRTGDPFEQPVI 895
>gi|186885891|gb|ACC93353.1| RNA polymerase beta subunit [Hyaloseris rubicunda]
Length = 1028
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 806 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 865
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 866 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 899
>gi|186885889|gb|ACC93352.1| RNA polymerase beta subunit [Hyalis argentea]
gi|186885893|gb|ACC93354.1| RNA polymerase beta subunit [Ianthopappus corymbosus]
Length = 1026
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 804 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 863
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 864 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 897
>gi|186885881|gb|ACC93348.1| RNA polymerase beta subunit [Hecastocleis shockleyi]
Length = 1023
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 801 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 860
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 861 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 894
>gi|186885825|gb|ACC93320.1| RNA polymerase beta subunit [Chaptalia nutans]
Length = 1028
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 806 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 865
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 866 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 899
>gi|186885793|gb|ACC93304.1| RNA polymerase beta subunit [Adenocaulon chilense]
Length = 1028
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 806 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 865
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 866 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 899
>gi|408901769|gb|AFU95599.1| RpoB, partial (chloroplast) [Hypericum kalmianum]
Length = 1038
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 48/95 (50%), Positives = 59/95 (62%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LYKA
Sbjct: 815 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYKA 874
Query: 73 CKQTA-NP----------CKTLDGQMGNPFKEHVL 96
K TA NP K DG+ G+PF++ VL
Sbjct: 875 GKDTAXNPWVFEPEYPGKSKLFDGRTGDPFEQPVL 909
>gi|186885895|gb|ACC93355.1| RNA polymerase beta subunit [Jungia polita]
Length = 1028
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 806 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 865
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 866 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQLVI 899
>gi|186885971|gb|ACC93393.1| RNA polymerase beta subunit [Warionia saharae]
Length = 1024
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 862 SKQTANPWIFEPESPGKSRIFDGRTGDPFEQPVI 895
>gi|186885925|gb|ACC93370.1| RNA polymerase beta subunit [Pasaccardoa grantii]
Length = 1024
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 862 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 895
>gi|186885911|gb|ACC93363.1| RNA polymerase beta subunit [Nassauvia pygmaea]
Length = 1028
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 806 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 865
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 866 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 899
>gi|186885863|gb|ACC93339.1| RNA polymerase beta subunit [Gamochaeta pensylvanica]
Length = 1024
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 862 SKQTANPWIFEPESPGKSRIFDGRTGDPFEQPVI 895
>gi|186885847|gb|ACC93331.1| RNA polymerase beta subunit [Dinoseris salicifolia]
Length = 1028
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 806 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 865
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 866 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 899
>gi|186885841|gb|ACC93328.1| RNA polymerase beta subunit [Dicoma sp. JLP-2008]
gi|186885843|gb|ACC93329.1| RNA polymerase beta subunit [Dicoma capensis]
Length = 1024
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 862 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 895
>gi|186885811|gb|ACC93313.1| RNA polymerase beta subunit [Berkheya purpurea]
Length = 1024
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 862 SKQTANPWIFEPESPGKSRIFDGRTGDPFEQPVI 895
>gi|133420|sp|P08036.1|RPOB_SAPOF RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|929885|emb|CAA30075.1| RNA polymerase [Saponaria officinalis]
Length = 417
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+ + SRKLV S+LY+A
Sbjct: 290 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRITPFDERYEHEASRKLVFSELYQA 349
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTA P + DG+ G+PF++ V+
Sbjct: 350 SKQTAKPWIFEPEYPGKSRIFDGRTGDPFEQPVI 383
>gi|156618818|ref|YP_001430100.1| RNA polymerase beta subunit [Cuscuta reflexa]
gi|156556003|emb|CAM98386.1| RNA polymerase beta chain [Cuscuta reflexa]
Length = 1070
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 47/104 (45%), Positives = 61/104 (58%), Gaps = 25/104 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+ R ++D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 840 PYLQDGR--SVDLVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASR 897
Query: 63 KLVLSKLYKACKQTANP----------CKTLDGQMGNPFKEHVL 96
K+V S+LY+A KQTANP + DG+ G F+ VL
Sbjct: 898 KIVFSELYEASKQTANPWAFEPEYPGKSRIFDGRTGKTFEHPVL 941
>gi|290489606|gb|ADD31187.1| RNA polymerase beta subunit protein [Aucuba japonica]
Length = 1070
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+ F++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDLFEQPVI 941
>gi|441403279|ref|YP_007353753.1| RNA polymerase beta subunit (chloroplast) [Chrysanthemum x
morifolium]
gi|452849038|ref|YP_007474716.1| RNA polymerase beta subunit (chloroplast) [Chrysanthemum indicum]
gi|372863193|gb|AEX99265.1| RNA polymerase beta subunit (chloroplast) [Chrysanthemum indicum]
gi|372863432|gb|AEX99501.1| RNA polymerase beta subunit (chloroplast) [Chrysanthemum indicum]
gi|375298822|gb|AFA45261.1| RNA polymerase beta subunit (chloroplast) [Chrysanthemum x
morifolium]
Length = 1060
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 838 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 897
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 898 SKQTANPWIFEPESPGKSRIFDGRTGDPFEQPVI 931
>gi|186885921|gb|ACC93368.1| RNA polymerase beta subunit [Osteospermum asperulum]
Length = 1024
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 862 SKQTANPWIFEPESPGKSRIFDGRTGDPFEQPVI 895
>gi|186885865|gb|ACC93340.1| RNA polymerase beta subunit [Gerbera piloselloides]
Length = 1028
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 806 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 865
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 866 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 899
>gi|186885853|gb|ACC93334.1| RNA polymerase beta subunit [Duidaea pinifolia]
Length = 1028
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 806 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 865
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 866 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 899
>gi|94502478|ref|YP_588104.1| RNA polymerase beta subunit [Helianthus annuus]
gi|122179585|sp|Q1KXX2.1|RPOB_HELAN RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|88656882|gb|ABD47133.1| RNA polymerase beta subunit [Helianthus annuus]
Length = 1060
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 838 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 897
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 898 SKQTANPWIFEPESPGKSRIFDGRTGDPFEQPVI 931
>gi|374257009|gb|AEZ01419.1| RNA polymerase beta subunit (chloroplast) [Japonolirion osense]
Length = 1070
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLNRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 908 SKQTQNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 941
>gi|126022812|ref|NP_904091.2| RNA polymerase beta subunit [Amborella trichopoda]
gi|158518417|sp|P60282.2|RPOB_AMBTC RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
Length = 1072
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV +LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRITPFDERYEQEASRKLVFPELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
K+TANP + DG+ G+PF++ V+
Sbjct: 910 SKRTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 943
>gi|34581933|gb|AAQ75895.1| RpoB [Helianthus annuus]
Length = 824
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 602 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 661
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 662 SKQTANPWIFEPESPGKSRIFDGRTGDPFEQPVI 695
>gi|34581972|gb|AAQ75921.1| RpoB [Layia heterotricha]
Length = 824
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 602 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 661
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 662 SKQTANPWIFEPESPGKSRIFDGRTGDPFEQPVI 695
>gi|34481621|emb|CAD45099.1| RNA polymerase beta subunit [Amborella trichopoda]
Length = 1078
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV +LY+A
Sbjct: 856 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRITPFDERYEQEASRKLVFPELYEA 915
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
K+TANP + DG+ G+PF++ V+
Sbjct: 916 SKRTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 949
>gi|160177574|sp|A7M958.2|RPOB_CUSRE RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
Length = 1070
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 47/104 (45%), Positives = 61/104 (58%), Gaps = 25/104 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+ R ++D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 840 PYLQDGR--SVDLVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASR 897
Query: 63 KLVLSKLYKACKQTANP----------CKTLDGQMGNPFKEHVL 96
K+V S+LY+A KQTANP + DG+ G F+ VL
Sbjct: 898 KIVFSELYEASKQTANPWAFEPEYPGKSRIFDGRTGKTFEHPVL 941
>gi|372481360|gb|AEX94355.1| RNA polymerase beta subunit (chloroplast) [Trichopetalum plumosum]
Length = 1068
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 846 VDMVFNPLGVPSRMNVGQIFECSLGLAGNLLKRHYRIAPFDERYEQEASRKLVFSELYEA 905
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 906 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 939
>gi|34582012|gb|AAQ75947.1| RpoB [Oyedaea verbesinoides]
Length = 824
Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 602 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 661
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 662 SKQTANPWIFEPESPGKSRIFDGRTGDPFEQPVI 695
>gi|34581954|gb|AAQ75909.1| RpoB [Inula britannica]
Length = 824
Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 602 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 661
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 662 SKQTANPWIFEPESPGKSRIFDGRTGDPFEQPVI 695
>gi|34582021|gb|AAQ75953.1| RpoB [Perityle lindheimeri]
Length = 824
Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 602 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 661
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 662 SKQTANPWIFEPESPGKSRIFDGRTGDPFEQPVI 695
>gi|34582033|gb|AAQ75961.1| RpoB [Phaneroglossa bolusii]
Length = 824
Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 602 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 661
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 662 SKQTANPWIFEPESPGKSRIFDGRTGDPFEQPVI 695
>gi|34581818|gb|AAQ75819.1| RpoB [Athroisma gracile subsp. psyllioides]
Length = 824
Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 602 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLNRHYRIAPFDERYEQEASRKLVFSELYEA 661
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 662 SKQTANPWIFEPESPGKSRIFDGRTGDPFEQPVI 695
>gi|186885943|gb|ACC93379.1| RNA polymerase beta subunit [Richterago amplexifolia]
Length = 1028
Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 806 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 865
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 866 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 899
>gi|186885869|gb|ACC93342.1| RNA polymerase beta subunit [Gochnatia hypoleuca]
Length = 1028
Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 806 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 865
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 866 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 899
>gi|186885833|gb|ACC93324.1| RNA polymerase beta subunit [Cnicothamnus lorentzii]
Length = 1028
Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 806 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 865
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 866 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 899
>gi|186885807|gb|ACC93311.1| RNA polymerase beta subunit [Baccharis neglecta]
Length = 1024
Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 862 SKQTANPWVFEPESPGKSRIFDGRTGDPFEQPVI 895
>gi|186885791|gb|ACC93303.1| RNA polymerase beta subunit [Richterago angustifolia]
Length = 1028
Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 806 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 865
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 866 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 899
>gi|376008283|gb|AFB18350.1| RNA polymerase beta subunit, partial [Potarophytum riparium]
Length = 1083
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 861 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 920
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 921 SKQTKNPWVFESEYPGKSRIFDGRTGDPFEQPVL 954
>gi|376008223|gb|AFB18321.1| RNA polymerase beta subunit [Albuca kirkii]
Length = 1070
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIGPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 908 SKQTKNPWVFEPEYPGKSRIFDGRAGDPFEQPVL 941
>gi|34581930|gb|AAQ75893.1| RpoB [Helenium bigelovii]
Length = 824
Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 602 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 661
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 662 SKQTANPWIFEPESPGKSRIFDGRTGDPFEQPVI 695
>gi|186885867|gb|ACC93341.1| RNA polymerase beta subunit [Gerbera serrata]
Length = 1028
Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 806 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 865
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 866 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 899
>gi|376008260|gb|AFB18339.1| RNA polymerase beta subunit [Joinvillea ascendens]
Length = 1073
Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 44/96 (45%), Positives = 60/96 (62%), Gaps = 23/96 (23%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLY 70
+++D++FNPL VP R N+G IFECSL +H FDERY+Q+ SRKLV S+LY
Sbjct: 849 TSVDMVFNPLGVPSRXNVGQIFECSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELY 908
Query: 71 KACKQTANP----------CKTLDGQMGNPFKEHVL 96
+A KQT NP + DG+ G+PF++ VL
Sbjct: 909 EASKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 944
>gi|290489612|gb|ADD31190.1| RNA polymerase beta subunit protein [Ilex cornuta]
Length = 1070
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D+IFNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMIFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
QTANP + DG+ G+PF++ V+
Sbjct: 908 STQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 941
>gi|376008250|gb|AFB18334.1| RNA polymerase beta subunit, partial [Fosterella caulescens]
Length = 1082
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 860 VDMVFNPLGVPSRMNVGQIFECSLGLAGNLLKRHYRIAPFDERYEQEASRKLVFSELYEA 919
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 920 SKQTRNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 953
>gi|376008270|gb|AFB18344.1| RNA polymerase beta subunit, partial [Navia saxicola]
Length = 1087
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 865 VDMVFNPLGVPSRMNVGQIFECSLGLAGNLLKRHYRIAPFDERYEQEASRKLVFSELYEA 924
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 925 SKQTRNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 958
>gi|408901767|gb|AFU95598.1| RpoB, partial (chloroplast) [Hypericum fraseri]
Length = 780
Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 47/95 (49%), Positives = 60/95 (63%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LYKA
Sbjct: 556 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYKA 615
Query: 73 CKQTA-NP----------CKTLDGQMGNPFKEHVL 96
K+TA NP + DG+ G+PF++ VL
Sbjct: 616 GKETAXNPWVFEPEYPGKSQLFDGRTGDPFEQPVL 650
>gi|376008281|gb|AFB18349.1| RNA polymerase beta subunit, partial [Pitcairnia feliciana]
Length = 1085
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 863 VDMVFNPLGVPSRMNVGQIFECSLELAGNLLKRHYRIAPFDERYEQEASRKLVFSELYEA 922
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 923 SKQTRNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 956
>gi|376008231|gb|AFB18325.1| RNA polymerase beta subunit, partial [Brocchinia micrantha]
Length = 1085
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 863 VDMVFNPLGVPSRMNVGQIFECSLGLAGNLLKRHYRIAPFDERYEQEASRKLVFSELYEA 922
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 923 SKQTRNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 956
>gi|186885935|gb|ACC93375.1| RNA polymerase beta subunit [Pluchea carolinensis]
Length = 1024
Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLNRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 862 GKQTANPWIFEPESPGKSRIFDGRTGDPFEQPVI 895
>gi|376008274|gb|AFB18346.1| RNA polymerase beta subunit, partial [Neoregelia carolinae]
Length = 1085
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 863 VDMVFNPLGVPSRMNVGQIFECSLGLAGNLLKRHYRIAPFDERYEQEASRKLVFSELYEA 922
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 923 SKQTRNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 956
>gi|66876507|gb|AAY58045.1| RpoB [Cuscuta europaea]
Length = 403
Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRK+V S+L++A
Sbjct: 219 VDLVFNPLGVPSRMNVGQIFECSLGLAGSLLNRHYRIAPFDERYEQEASRKIVFSQLHEA 278
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
K+TA+P + DG+ GNPF++ +L
Sbjct: 279 SKKTAHPWAFEPEYPGKSRIFDGRTGNPFEQPIL 312
>gi|34582147|gb|AAQ76037.1| RpoB [Zinnia juniperifolia]
Length = 825
Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY A
Sbjct: 603 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYSA 662
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 663 SKQTANPWIFEPESPGKSRIFDGRTGDPFEQPVI 696
>gi|197294112|ref|YP_002149733.1| RNA polymerase beta subunit [Cicer arietinum]
gi|197089800|gb|ACH41070.1| RNA polymerase beta subunit [Cicer arietinum]
Length = 1070
Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGSMLNRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT+NP DG+ GN F++ V+
Sbjct: 908 SKQTSNPWIFEPEYPGKSGIFDGRTGNRFEQAVI 941
>gi|334701789|ref|YP_004564359.1| RNA polymerase beta subunit (chloroplast) [Ageratina adenophora]
gi|334089660|gb|AEG64543.1| RNA polymerase beta subunit (chloroplast) [Ageratina adenophora]
Length = 1060
Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 838 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 897
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G PF++ V+
Sbjct: 898 SKQTANPWIFEPESPGKSRIFDGRTGGPFEQPVI 931
>gi|408901733|gb|AFU95581.1| RpoB, partial (chloroplast) [Bergia texana]
Length = 1108
Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 46/95 (48%), Positives = 60/95 (63%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 884 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 943
Query: 73 CKQTA-NP----------CKTLDGQMGNPFKEHVL 96
KQTA NP + DG+ G+PF++ V+
Sbjct: 944 SKQTAXNPWVFEPEYPGKSRIFDGRTGDPFEQPVI 978
>gi|456330982|ref|YP_007476343.1| RpoB (chloroplast) [Trithuria inconspicua]
gi|449713833|emb|CCJ32509.1| RpoB (chloroplast) [Trithuria inconspicua]
Length = 1071
Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 57/94 (60%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVLNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRITPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT+NP DG+ G+PF+ VL
Sbjct: 910 SKQTSNPWVFEPEYPGKSIIFDGRTGDPFQRPVL 943
>gi|372481366|gb|AEX94358.1| RNA polymerase beta subunit (chloroplast) [Eriospermum cervicorne]
Length = 1070
Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVCNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 908 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 941
>gi|197131684|gb|ACH47360.1| RNA polymerase beta subunit [Pelargonium cotyledonis]
Length = 1074
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
ID++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 846 IDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRVAPFDERYEQEASRKLVFSELYEA 905
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + LDG+ G+ F++ V+
Sbjct: 906 SKQTGNPWVFEPEYPGKSRILDGRTGDSFEQPVI 939
>gi|186885799|gb|ACC93307.1| RNA polymerase beta subunit [Ainsliaea macrocephala]
Length = 1024
Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D +FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDYVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 862 SKQTANPWIFEPEYPGKSRIFDGRTGDPFEQPVI 895
>gi|186885851|gb|ACC93333.1| RNA polymerase beta subunit [Doniophyton anomalum]
Length = 1024
Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT+NP + DG+ G+PF++ V+
Sbjct: 862 SKQTSNPWVFEPEYPGKSRIFDGRTGDPFEQPVI 895
>gi|408901755|gb|AFU95592.1| RpoB, partial (chloroplast) [Euphorbia maculata]
Length = 807
Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 46/95 (48%), Positives = 60/95 (63%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 583 LDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 642
Query: 73 CKQTA-NP----------CKTLDGQMGNPFKEHVL 96
KQTA NP + DG+ G+PF++ V+
Sbjct: 643 SKQTAXNPWVFEPEYPGKSRIFDGRTGDPFEQPVI 677
>gi|186885831|gb|ACC93323.1| RNA polymerase beta subunit [Chuquiraga spinosa]
Length = 1024
Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT+NP + DG+ G+PF++ V+
Sbjct: 862 SKQTSNPWVFEPEYPGKSRIFDGRTGDPFEQPVI 895
>gi|374249257|ref|YP_005088000.1| rpoB gene product [Leersia tisserantii]
gi|346228294|gb|AEO21168.1| RNA polymerase beta subunit [Leersia tisserantii]
Length = 1075
Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 853 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 912
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ GNPF++ VL
Sbjct: 913 SKQTKNPWVFEPEYPGKSRIFDGRTGNPFEQPVL 946
>gi|372481296|gb|AEX94323.1| RNA polymerase beta subunit (chloroplast) [Agapanthus africanus]
gi|376008221|gb|AFB18320.1| RNA polymerase beta subunit [Agapanthus praecox]
Length = 1070
Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D+IFNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMIFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+ F++ VL
Sbjct: 908 SKQTKNPWVFEPEYPGKSRIFDGRTGDLFEQPVL 941
>gi|408901763|gb|AFU95596.1| RpoB, partial (chloroplast) [Goupia glabra]
Length = 705
Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 46/95 (48%), Positives = 60/95 (63%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 482 VDMVFNPLGVPSRMNVGQIFECSLGLTGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 541
Query: 73 CKQTA-NP----------CKTLDGQMGNPFKEHVL 96
KQTA NP + DG+ G+PF++ V+
Sbjct: 542 GKQTAXNPWVFEPEYPGKSRIFDGRTGDPFEQPVI 576
>gi|186885857|gb|ACC93336.1| RNA polymerase beta subunit [Eremanthus erythropappus]
Length = 1024
Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT+NP + DG+ G+PF++ V+
Sbjct: 862 SKQTSNPWIFEPESPGKSRIFDGRTGDPFEQPVI 895
>gi|334702312|ref|YP_004465175.1| RNA polymerase beta subunit [Jacobaea vulgaris]
gi|308156070|gb|ADO15398.1| RNA polymerase beta subunit [Jacobaea vulgaris]
Length = 1060
Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 838 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 897
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT+NP + DG+ G+PF++ V+
Sbjct: 898 SKQTSNPWIFEPESPGKSRIFDGRTGDPFEQPVI 931
>gi|376008248|gb|AFB18333.1| RNA polymerase beta subunit, partial [Flagellaria indica]
Length = 1081
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 860 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 919
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 920 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 953
>gi|376008292|gb|AFB18354.1| RNA polymerase beta subunit, partial [Streptochaeta angustifolia]
Length = 1075
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 853 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 912
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 913 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 946
>gi|295065718|ref|YP_003587658.1| RNA polymerase beta subunit [Anomochloa marantoidea]
gi|251765242|gb|ACT15396.1| RNA polymerase beta subunit [Anomochloa marantoidea]
Length = 1077
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 855 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 914
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 915 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 948
>gi|408901739|gb|AFU95584.1| RpoB, partial (chloroplast) [Caloncoba echinata]
Length = 1107
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 46/95 (48%), Positives = 59/95 (62%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 884 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 943
Query: 73 CKQTA-NP----------CKTLDGQMGNPFKEHVL 96
KQTA NP + DG+ G PF++ V+
Sbjct: 944 SKQTAXNPWVFEPEYPGKSRIFDGRTGGPFEQPVI 978
>gi|408901787|gb|AFU95608.1| RpoB, partial (chloroplast) [Ouratea sp. CCD-2012]
Length = 607
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 46/95 (48%), Positives = 59/95 (62%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 383 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIPPFDERYEQEASRKLVFSELYEA 442
Query: 73 CKQTA-NP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 443 SKQTGXNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 477
>gi|408901747|gb|AFU95588.1| RpoB, partial (chloroplast) [Ctenolophon englerianus]
Length = 703
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 46/95 (48%), Positives = 60/95 (63%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 479 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 538
Query: 73 CKQTA-NPC----------KTLDGQMGNPFKEHVL 96
KQTA NP + DG+ G+PF++ V+
Sbjct: 539 SKQTAXNPWVFEPEYPGKGRIFDGRTGDPFEQPVI 573
>gi|295137021|ref|YP_003587568.1| RNA polymerase beta subunit [Pisum sativum]
gi|293338593|gb|ADE43566.1| RNA polymerase beta subunit (chloroplast) [Pisum sativum]
Length = 1070
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G I ECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQILECSLGLAGSMLNRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT+NP + DG+ GN F++ V+
Sbjct: 908 SKQTSNPWIFEPEYPGKSRIFDGRTGNAFEQPVI 941
>gi|186885975|gb|ACC93395.1| RNA polymerase beta subunit [Youngia japonica]
Length = 1024
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ V+
Sbjct: 862 SKQTVNPWIFEPESPGKSRIFDGRTGDPFEQPVI 895
>gi|186885879|gb|ACC93347.1| RNA polymerase beta subunit [Gymnarrhena micrantha]
Length = 1024
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ V+
Sbjct: 862 SKQTGNPWIFEPEYPGKSRIFDGRTGDPFEQPVI 895
>gi|376008225|gb|AFB18322.1| RNA polymerase beta subunit, partial [Apostasia wallichii]
Length = 1081
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 859 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 918
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 919 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 952
>gi|61992021|gb|AAX58142.1| RNA polymerase beta subunit [Lactuca sativa]
Length = 1070
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ V+
Sbjct: 908 SKQTVNPWIFEPESPGKSRIFDGRTGDPFEQPVI 941
>gi|186885821|gb|ACC93318.1| RNA polymerase beta subunit [Centratherum punctatum]
Length = 1024
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ V+
Sbjct: 862 SKQTVNPWIFEPESPGKSRIFDGRTGDPFEQPVI 895
>gi|186885969|gb|ACC93392.1| RNA polymerase beta subunit [Ursinia speciosa]
Length = 1024
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ V+
Sbjct: 862 SKQTVNPWIFEPESPGKSRIFDGRTGDPFEQPVI 895
>gi|34582099|gb|AAQ76005.1| RpoB [Tagetes erecta]
Length = 824
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 602 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 661
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ V+
Sbjct: 662 SKQTTNPWIFEPESPGKSRIFDGRTGDPFEQPVI 695
>gi|408901741|gb|AFU95585.1| RpoB, partial (chloroplast) [Casearia nitida]
Length = 1077
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 46/95 (48%), Positives = 60/95 (63%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 854 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 913
Query: 73 CKQTA-NP----------CKTLDGQMGNPFKEHVL 96
KQTA NP + DG+ G+PF++ V+
Sbjct: 914 GKQTAXNPWVFEPEYPGKSRIFDGRTGDPFEQPVI 948
>gi|81176237|ref|YP_398316.1| RNA polymerase beta subunit [Lactuca sativa]
gi|85700397|sp|Q56P13.2|RPOB_LACSA RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|78675155|dbj|BAE47581.1| RNA polymerase beta subunit [Lactuca sativa]
gi|88656970|gb|ABD47220.1| RNA polymerase beta subunit [Lactuca sativa]
Length = 1060
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 838 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 897
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ V+
Sbjct: 898 SKQTVNPWIFEPESPGKSRIFDGRTGDPFEQPVI 931
>gi|34581975|gb|AAQ75923.1| RpoB [Trilisa paniculata]
Length = 826
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 604 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 663
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ V+
Sbjct: 664 SKQTVNPWIFEPESPGKSRIFDGRTGDPFEQPVI 697
>gi|408901729|gb|AFU95579.1| RpoB, partial (chloroplast) [Averrhoa carambola]
Length = 862
Score = 85.5 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 46/95 (48%), Positives = 60/95 (63%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
ID++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 638 IDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 697
Query: 73 CKQTA-NP----------CKTLDGQMGNPFKEHVL 96
KQTA NP + DG+ G+PF++ ++
Sbjct: 698 SKQTAXNPWVFEPEYPGKSRIFDGRTGDPFEQPLI 732
>gi|408901813|gb|AFU95621.1| RpoB, partial (chloroplast) [Turnera ulmifolia]
Length = 1101
Score = 85.5 bits (210), Expect = 4e-15, Method: Composition-based stats.
Identities = 46/95 (48%), Positives = 59/95 (62%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RHF-----DERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH+ DERY+Q+ SRKLV S+LY+A
Sbjct: 878 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPLDERYEQEASRKLVFSELYEA 937
Query: 73 CKQTA-NP----------CKTLDGQMGNPFKEHVL 96
KQTA NP + DG+ G+PF + VL
Sbjct: 938 SKQTAXNPWVFEPEYPGKSRIFDGRTGDPFDQPVL 972
>gi|376008290|gb|AFB18353.1| RNA polymerase beta subunit, partial [Sparganium eurycarpum]
Length = 1083
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 861 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 920
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
K+T NP + DG+ G+PF++ VL
Sbjct: 921 SKKTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 954
>gi|428696849|ref|YP_007025150.1| RNA polymerase beta subunit [Erodium cygnorum]
Length = 1123
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+L++A
Sbjct: 901 VDMVFNPLGVPSRMNVGQIFECSLGLAGVLLNRHYRVAPFDERYEQEASRKLVFSELHEA 960
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 961 SKQTGNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 994
>gi|456061762|ref|YP_007475953.1| RNA polymerase beta subunit [Bismarckia nobilis]
gi|449326436|gb|AGE93018.1| RNA polymerase beta subunit [Bismarckia nobilis]
Length = 1069
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 56/95 (58%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------------RHFDERYKQKGSRKLVLSKLYK 71
+D++FNPL VP RMN+G IFECSL FDERY+Q+ SRKLV S+LY
Sbjct: 846 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKTLSLWKAPFDERYEQEASRKLVFSELYS 905
Query: 72 ACKQTANP----------CKTLDGQMGNPFKEHVL 96
ACKQ NP + DG+ G+PF++ VL
Sbjct: 906 ACKQRKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 940
>gi|186885871|gb|ACC93343.1| RNA polymerase beta subunit [Gochnatia hiriartiana]
Length = 1028
Score = 85.5 bits (210), Expect = 4e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RM++G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 806 VDMVFNPLGVPSRMDVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 865
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 866 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 899
>gi|197131674|gb|ACH47355.1| RNA polymerase beta subunit [Geranium carolinianum]
Length = 1113
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
ID++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+L++A
Sbjct: 891 IDMVFNPLGVPSRMNVGQIFECSLGLAGVLLDRHYRVAPFDERYEQEASRKLVFSELHEA 950
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ V+
Sbjct: 951 SKQTGNPWVFEPEYPGKSRIFDGRTGDPFEQPVI 984
>gi|372481352|gb|AEX94351.1| RNA polymerase beta subunit (chloroplast) [Ornithogalum
tenuifolium]
Length = 1070
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIGPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP DG+ G+PF++ VL
Sbjct: 908 SKQTKNPWVFEPEYPGKSIIFDGRAGDPFEQPVL 941
>gi|372481348|gb|AEX94349.1| RNA polymerase beta subunit (chloroplast) [Drimia altissima]
Length = 1070
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLELAGDLLKRHYRIGPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP DG+ G+PF++ VL
Sbjct: 908 SKQTKNPWVFEPEYPGKSIIFDGRAGDPFEQPVL 941
>gi|428697165|ref|YP_007025349.1| RNA polymerase beta subunit [Erodium jahandiezianum]
Length = 1134
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
ID++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+L++A
Sbjct: 912 IDMVFNPLGVPSRMNVGQIFECSLGLAGALLDRHYRVVPFDERYEQEASRKLVFSELHEA 971
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ V+
Sbjct: 972 SKQTGNPWVFEPEYPGKSRIFDGRTGDPFEQPVI 1005
>gi|309322138|ref|YP_003934053.1| RNA polymerase beta subunit [Geranium palmatum]
gi|197131678|gb|ACH47357.1| RNA polymerase beta subunit [Geranium palmatum]
gi|300069231|gb|ADJ66352.1| RNA polymerase beta subunit [Geranium palmatum]
Length = 1109
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
ID++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+L++A
Sbjct: 887 IDMVFNPLGVPSRMNVGQIFECSLGLAGVLLDRHYRVAPFDERYEQEASRKLVFSELHEA 946
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ V+
Sbjct: 947 SKQTGNPWVFEPEYPGKSRIFDGRTGDPFEQPVI 980
>gi|186885955|gb|ACC93385.1| RNA polymerase beta subunit [Stifftia chrysantha]
Length = 1028
Score = 85.1 bits (209), Expect = 5e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 806 VDMVFNPLGVPSRMNVGQIFESSLGLGGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 865
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 866 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 899
>gi|226689|prf||1603356P RNA polymerase beta
Length = 1000
Score = 85.1 bits (209), Expect = 5e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 853 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 912
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 913 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 946
>gi|197131676|gb|ACH47356.1| RNA polymerase beta subunit [Geranium macrorrhizum]
Length = 984
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
ID++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+L++A
Sbjct: 762 IDMVFNPLGVPSRMNVGQIFECSLGLAGVLLDRHYRVAPFDERYEQEASRKLVFSELHEA 821
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ V+
Sbjct: 822 SKQTGNPWVFEPEYPGKSRIFDGRTGDPFEQPVI 855
>gi|428697520|ref|YP_007025804.1| RNA polymerase beta subunit [Erodium moschatum]
Length = 1116
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+L++A
Sbjct: 894 LDMVFNPLGVPSRMNVGQIFECSLGLAGVLLDRHYRVAPFDERYEQEASRKLVFSELHEA 953
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 954 SKQTGNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 987
>gi|408901803|gb|AFU95616.1| RpoB, partial (chloroplast) [Quiina glaziovii]
Length = 1108
Score = 85.1 bits (209), Expect = 5e-15, Method: Composition-based stats.
Identities = 45/95 (47%), Positives = 58/95 (61%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL FDERY+Q+ SRKLV S+LY+A
Sbjct: 884 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRQYRIAPFDERYEQEASRKLVFSELYEA 943
Query: 73 CKQTA-NP----------CKTLDGQMGNPFKEHVL 96
KQTA NP + DG+ G+PF++ VL
Sbjct: 944 SKQTAXNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 978
>gi|323148822|ref|YP_004221915.1| RNA polymerase beta subunit [Erodium carvifolium]
gi|316926286|gb|ADU58139.1| RNA polymerase beta subunit [Erodium carvifolium]
Length = 1116
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+L++A
Sbjct: 894 LDMVFNPLGVPSRMNVGQIFECSLGLAGVLLDRHYRVAPFDERYEQEASRKLVFSELHEA 953
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 954 SKQTGNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 987
>gi|197131672|gb|ACH47354.1| RNA polymerase beta subunit [Erodium texanum]
Length = 1161
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
ID++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+L++A
Sbjct: 904 IDMVFNPLGVPSRMNVGQIFECSLGLAGALLDRHYRVAPFDERYEQEASRKLVFSELHEA 963
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ V+
Sbjct: 964 SKQTGNPWVFEPEYPGKSRIFDGRTGDPFEQPVI 997
>gi|428696918|ref|YP_007025219.1| RNA polymerase beta subunit [Erodium cossonii]
Length = 1116
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+L++A
Sbjct: 894 LDMVFNPLGVPSRMNVGQIFECSLGLAGVLLDRHYRVAPFDERYEQEASRKLVFSELHEA 953
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 954 SKQTGNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 987
>gi|428697363|ref|YP_007025545.1| RNA polymerase beta subunit [Erodium foetidum subsp.
cheilanthifolium]
Length = 1116
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+L++A
Sbjct: 894 LDMVFNPLGVPSRMNVGQIFECSLGLAGVLLDRHYRVAPFDERYEQEASRKLVFSELHEA 953
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 954 SKQTGNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 987
>gi|408901771|gb|AFU95600.1| RpoB, partial (chloroplast) [Hypericum perforatum]
Length = 1016
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 60/95 (63%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LYKA
Sbjct: 792 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYKA 851
Query: 73 CKQTA-NP----------CKTLDGQMGNPFKEHVL 96
K+TA NP K DG+ G+PF++ VL
Sbjct: 852 GKETAXNPWVFEPEFPGKSKLFDGRTGDPFEQPVL 886
>gi|408901811|gb|AFU95620.1| RpoB, partial (chloroplast) [Trigonia sp. CCD-2012]
Length = 708
Score = 85.1 bits (209), Expect = 5e-15, Method: Composition-based stats.
Identities = 45/95 (47%), Positives = 60/95 (63%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDE+Y+Q+ SRKLV S+LY+A
Sbjct: 484 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDEKYEQEASRKLVFSELYEA 543
Query: 73 CKQTA-NP----------CKTLDGQMGNPFKEHVL 96
KQTA NP + DG+ G+PF++ V+
Sbjct: 544 GKQTAXNPWVFEPEHPGKSRVFDGRTGDPFEQPVI 578
>gi|340034441|ref|YP_004734092.1| RNA polymerase beta subunit [Bambusa emeiensis]
gi|309321944|gb|ADO65465.1| RNA polymerase beta subunit [Bambusa emeiensis]
Length = 1075
Score = 84.7 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 853 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 912
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 913 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 946
>gi|255961373|ref|YP_003097566.1| RNA polymerase beta subunit [Dendrocalamus latiflorus]
gi|255040250|gb|ACT99910.1| RNA polymerase beta subunit [Dendrocalamus latiflorus]
Length = 1075
Score = 84.7 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 853 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 912
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 913 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 946
>gi|253729547|ref|YP_003029730.1| RpoB [Bambusa oldhamii]
gi|246367057|gb|ACS94668.1| RpoB [Bambusa oldhamii]
Length = 1075
Score = 84.7 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 853 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 912
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 913 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 946
>gi|408901785|gb|AFU95607.1| RpoB, partial (chloroplast) [Microdesmis caseariifolia]
Length = 1108
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 64/105 (60%), Gaps = 26/105 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+ + R +D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 876 PYLQNGR--PVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASR 933
Query: 63 KLVLSKLYKACKQTA-NP----------CKTLDGQMGNPFKEHVL 96
KLV S+LY+A KQTA NP + DG+ G+PF++ VL
Sbjct: 934 KLVFSELYEASKQTAXNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 978
>gi|452849473|ref|YP_007475130.1| RNA polymerase beta subunit (chloroplast) [Arundinaria gigantea]
gi|441480241|gb|AGC38153.1| RNA polymerase beta subunit (chloroplast) [Arundinaria gigantea]
Length = 1075
Score = 84.7 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 853 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 912
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 913 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 946
>gi|374277671|gb|AEZ03776.1| hypothetical protein (mitochondrion) [Oryza sativa Indica Group]
Length = 1075
Score = 84.7 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 853 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 912
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 913 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 946
>gi|337730930|gb|AEI70809.1| RNA polymerase beta subunit [Puelia olyriformis]
Length = 1075
Score = 84.7 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 853 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 912
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 913 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 946
>gi|340034527|ref|YP_004734176.1| RNA polymerase beta subunit [Ferrocalamus rimosivaginus]
gi|309321692|gb|ADO65216.1| RNA polymerase beta subunit [Ferrocalamus rimosivaginus]
Length = 1075
Score = 84.7 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 853 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 912
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 913 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 946
>gi|340034188|ref|YP_004733751.1| RNA polymerase beta subunit [Acidosasa purpurea]
gi|309321608|gb|ADO65133.1| RNA polymerase beta subunit [Acidosasa purpurea]
Length = 1075
Score = 84.7 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 853 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 912
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 913 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 946
>gi|290790839|gb|ADD63095.1| RNA polymerase beta subunit [Microlaena stipoides]
Length = 1067
Score = 84.7 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 845 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 904
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 905 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 938
>gi|339906514|ref|YP_004733235.1| RNA polymerase beta subunit [Indocalamus longiauritus]
gi|340034017|ref|YP_004733569.1| RNA polymerase beta subunit [Phyllostachys edulis]
gi|340034356|ref|YP_004733969.1| RNA polymerase beta subunit [Phyllostachys nigra var. henonis]
gi|374249341|ref|YP_005088523.1| rpoB gene product (chloroplast) [Phyllostachys propinqua]
gi|187233923|gb|ACD01208.1| RNA polymerase beta subunit [Phyllostachys propinqua]
gi|307133877|gb|ADN32882.1| RNA polymerase beta subunit [Phyllostachys nigra var. henonis]
gi|309321847|gb|ADO65370.1| RNA polymerase beta subunit [Indocalamus longiauritus]
gi|309321859|gb|ADO65381.1| RNA polymerase beta subunit [Phyllostachys edulis]
gi|346228378|gb|AEO21251.1| RNA polymerase beta subunit (chloroplast) [Phyllostachys propinqua]
Length = 1075
Score = 84.7 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 853 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 912
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 913 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 946
>gi|118614482|ref|YP_899397.1| RNA polymerase beta subunit [Sorghum bicolor]
gi|125987644|sp|A1E9R4.1|RPOB_SORBI RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|118201116|gb|ABK79486.1| RNA polymerase beta subunit [Sorghum bicolor]
Length = 1075
Score = 84.7 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 853 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 912
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 913 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 946
>gi|376008246|gb|AFB18332.1| RNA polymerase beta subunit, partial [Eleusine coracana]
Length = 1075
Score = 84.7 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 853 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 912
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 913 SKQTQNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 946
>gi|48478763|ref|YP_024371.1| RNA polymerase beta subunit [Saccharum hybrid cultivar SP-80-3280]
gi|50812518|ref|YP_054621.1| RNA polymerase beta subunit [Saccharum hybrid cultivar NCo 310]
gi|68053153|sp|Q6ENX3.1|RPOB_SACOF RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|48478665|gb|AAT44685.1| RNA polymerase beta chain [Saccharum hybrid cultivar SP80-3280]
gi|49659502|dbj|BAD27283.1| RNA polymerase beta subunit [Saccharum hybrid cultivar NCo 310]
Length = 1075
Score = 84.7 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 853 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 912
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 913 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 946
>gi|11467182|ref|NP_043015.1| RNA polymerase beta subunit [Zea mays]
gi|133414|sp|P16023.1|RPOB_MAIZE RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|12480|emb|CAA35195.1| unnamed protein product [Zea mays]
gi|902212|emb|CAA60276.1| RNA polymerase beta subunit [Zea mays]
Length = 1075
Score = 84.7 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 853 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 912
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 913 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 946
>gi|408901749|gb|AFU95589.1| RpoB, partial (chloroplast) [Dichapetalum zenkeri]
Length = 1108
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 60/95 (63%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDE+Y+Q+ SRKLV S+LYKA
Sbjct: 884 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDEKYEQEASRKLVFSELYKA 943
Query: 73 CKQTA-NP----------CKTLDGQMGNPFKEHVL 96
KQTA NP K DG+ G+PF++ V+
Sbjct: 944 GKQTAXNPWVFEPEHPGKSKVFDGRTGDPFEQPVI 978
>gi|307697295|gb|ADN86102.1| RNA polymerase beta subunit [Chasmanthium latifolium]
Length = 1075
Score = 84.7 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 853 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 912
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 913 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 946
>gi|68164795|ref|YP_247591.1| RNA polymerase beta subunit [Cucumis sativus]
gi|67511390|emb|CAJ00750.1| RNA polymerase beta chain [Cucumis sativus]
Length = 1071
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 64/105 (60%), Gaps = 26/105 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+ + R +D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 840 PYLQNGR--PVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASR 897
Query: 63 KLVLSKLYKACKQTAN---------PCKT--LDGQMGNPFKEHVL 96
KLV S+LY+A KQTA P K+ DG+ GNPF++ V+
Sbjct: 898 KLVFSELYEASKQTAKSPWVFEPEYPGKSRIFDGRTGNPFEQPVI 942
>gi|260677410|ref|YP_003208178.1| RNA polymerase beta subunit [Coix lacryma-jobi]
gi|209361348|gb|ACI43263.1| RNA polymerase beta subunit [Coix lacryma-jobi]
Length = 1075
Score = 84.7 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 853 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 912
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 913 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 946
>gi|219673994|ref|YP_002456479.1| RNA polymerase beta subunit [Trifolium subterraneum]
gi|193788963|gb|ACF20559.1| RNA polymerase beta subunit [Trifolium subterraneum]
Length = 1070
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMNIG + ECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNIGQLLECSLGLAGSKLNRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
K+T+NP + DG+ GNPF++ V+
Sbjct: 908 SKETSNPWIFEPEYPGKSRLFDGRTGNPFEQPVI 941
>gi|92090945|sp|Q6L3A7.2|RPOB_SACHY RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
Length = 1075
Score = 84.7 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 853 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 912
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 913 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 946
>gi|408901761|gb|AFU95595.1| RpoB, partial (chloroplast) [Galearia maingayi]
Length = 1108
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 60/95 (63%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 884 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 943
Query: 73 CKQTA-NP----------CKTLDGQMGNPFKEHVL 96
KQTA NP + DG+ G+PF++ VL
Sbjct: 944 SKQTAXNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 978
>gi|11466777|ref|NP_039373.1| RNA polymerase beta subunit [Oryza sativa Japonica Group]
gi|50233961|ref|YP_052739.1| RNA polymerase beta subunit [Oryza nivara]
gi|109156587|ref|YP_654206.1| RNA polymerase beta subunit [Oryza sativa Indica Group]
gi|378758405|ref|YP_005296409.1| rpoB gene product (chloroplast) [Oryza meridionalis]
gi|386799161|ref|YP_006280750.1| rpoB gene product (chloroplast) [Oryza rufipogon]
gi|68053142|sp|Q6ENI4.1|RPOB_ORYNI RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|148839636|sp|P0C501.1|RPOB_ORYSA RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|148839637|sp|P0C502.1|RPOB_ORYSI RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|148839638|sp|P0C503.1|RPOB_ORYSJ RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|11971|emb|CAA33986.1| RNA polymerase beta subunit [Oryza sativa Japonica Group]
gi|42795479|gb|AAS46046.1| RNA polymerase beta chain [Oryza sativa Indica Group]
gi|49614985|dbj|BAD26768.1| RNA polymerase beta subunit [Oryza nivara]
gi|336326829|gb|AEI53007.1| RNA polymerase beta subunit (chloroplast) [Oryza meridionalis]
gi|336326905|gb|AEI53082.1| RNA polymerase beta subunit (chloroplast) [Oryza rufipogon]
gi|336326983|gb|AEI53159.1| RNA polymerase beta subunit (chloroplast) [Oryza rufipogon]
gi|353685123|gb|AER12888.1| RNA polymerase beta subunit (chloroplast) [Oryza sativa Indica
Group]
gi|353685133|gb|AER12897.1| RNA polymerase beta subunit (chloroplast) [Oryza sativa Indica
Group]
Length = 1075
Score = 84.7 bits (208), Expect = 7e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 853 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 912
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 913 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 946
>gi|376008262|gb|AFB18340.1| RNA polymerase beta subunit [Juncus effusus]
Length = 1077
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 57/94 (60%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D+IFNPL VP RMN+G IFECSL RH FDERY+Q SRKLV S+LYKA
Sbjct: 852 VDMIFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIASFDERYEQDASRKLVFSELYKA 911
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
+QT NP + DG+ G+ F++ VL
Sbjct: 912 SRQTTNPWVFEPEYPGKSRIFDGRTGDLFEQPVL 945
>gi|374277622|gb|AEZ03728.1| hypothetical protein (mitochondrion) [Oryza sativa Indica Group]
Length = 1054
Score = 84.7 bits (208), Expect = 7e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 832 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 891
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 892 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 925
>gi|374249610|ref|YP_005089137.1| rpoB gene product [Rhynchoryza subulata]
gi|346228462|gb|AEO21334.1| RNA polymerase beta subunit [Rhynchoryza subulata]
Length = 1075
Score = 84.7 bits (208), Expect = 7e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 853 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 912
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 913 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 946
>gi|42795545|gb|AAS46111.1| RNA polymerase beta chain [Oryza sativa Japonica Group]
gi|42795609|gb|AAS46174.1| RNA polymerase beta chain [Oryza sativa Japonica Group]
gi|290790564|gb|ADD62824.1| RNA polymerase beta subunit [Oryza sativa Japonica Group]
gi|290790633|gb|ADD62892.1| RNA polymerase beta subunit [Oryza meridionalis]
gi|290790702|gb|ADD62960.1| RNA polymerase beta subunit [Oryza australiensis]
Length = 1067
Score = 84.7 bits (208), Expect = 7e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 845 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 904
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 905 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 938
>gi|32487328|emb|CAE05903.1| OSJNBa0061C08.10 [Oryza sativa Japonica Group]
gi|57834097|emb|CAE04762.3| OSJNBa0079C19.3 [Oryza sativa Japonica Group]
Length = 1067
Score = 84.7 bits (208), Expect = 7e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 845 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 904
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 905 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 938
>gi|290790771|gb|ADD63028.1| RNA polymerase beta subunit [Potamophila parviflora]
Length = 1067
Score = 84.7 bits (208), Expect = 7e-15, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 845 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 904
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 905 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 938
>gi|408901793|gb|AFU95611.1| RpoB, partial (chloroplast) [Phyllanthus urinaria]
Length = 771
Score = 84.3 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 45/95 (47%), Positives = 59/95 (62%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDER +Q+ SRKLV S+LY+A
Sbjct: 547 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERCEQEASRKLVFSELYEA 606
Query: 73 CKQTA-NP----------CKTLDGQMGNPFKEHVL 96
CKQTA NP + DG+ G+P ++ V+
Sbjct: 607 CKQTAXNPWVFEPEYPGKSRIFDGRTGDPLEQPVI 641
>gi|186885953|gb|ACC93384.1| RNA polymerase beta subunit [Stenopadus talaumifolius]
Length = 1026
Score = 84.3 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 804 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 863
Query: 73 CKQTAN--------PCKT--LDGQMGNPFKEHVL 96
KQTAN P K+ DG+ G+PF++ V+
Sbjct: 864 SKQTANTWVFEPEYPGKSRIFDGRTGDPFEQPVI 897
>gi|408901795|gb|AFU95612.1| RpoB, partial (chloroplast) [Ploiarium sp. CCD-2012]
Length = 1104
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 63/105 (60%), Gaps = 26/105 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+ R +D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 872 PYLQDGR--TVDMVFNPLGVPSRMNVGQIFECSLGLAGGMLDRHYRIAPFDERYEQEASR 929
Query: 63 KLVLSKLYKACKQTA-NP----------CKTLDGQMGNPFKEHVL 96
KLV S+LY+A KQTA NP + DG+ G+PF++ V+
Sbjct: 930 KLVFSELYEASKQTAXNPWVFEPEYPGKSRIFDGRTGDPFEQPVI 974
>gi|186885951|gb|ACC93383.1| RNA polymerase beta subunit [Sonchus oleraceus]
Length = 1024
Score = 84.3 bits (207), Expect = 8e-15, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDKHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ V+
Sbjct: 862 SKQTVNPWIFEPESPGKSRIFDGRTGDPFEQPVI 895
>gi|41017685|sp|Q7YJX8.1|RPOB_CALFG RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|32399371|emb|CAD28713.1| RNA polymerase beta subunit [Calycanthus floridus var. glaucus]
Length = 1060
Score = 84.3 bits (207), Expect = 8e-15, Method: Composition-based stats.
Identities = 42/94 (44%), Positives = 57/94 (60%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G +FECSL +H FDERY+Q+ SRKLV +LY A
Sbjct: 838 VDMVFNPLGVPSRMNVGQMFECSLGLAGYLLDKHYRIAPFDERYEQEASRKLVFPELYSA 897
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ V+
Sbjct: 898 SKQTVNPWVFEPEYPGKSRIFDGRTGDPFEQPVI 931
>gi|90595843|ref|NP_862746.2| RNA polymerase beta subunit [Calycanthus floridus var. glaucus]
Length = 1069
Score = 84.3 bits (207), Expect = 8e-15, Method: Composition-based stats.
Identities = 42/94 (44%), Positives = 57/94 (60%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G +FECSL +H FDERY+Q+ SRKLV +LY A
Sbjct: 847 VDMVFNPLGVPSRMNVGQMFECSLGLAGYLLDKHYRIAPFDERYEQEASRKLVFPELYSA 906
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ V+
Sbjct: 907 SKQTVNPWVFEPEYPGKSRIFDGRTGDPFEQPVI 940
>gi|197131670|gb|ACH47353.1| RNA polymerase beta subunit [Erodium chrysanthum]
Length = 1200
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
ID++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+L++A
Sbjct: 978 IDMVFNPLGVPSRMNVGQIFECSLGLAGVLLERHYRVGPFDERYEQEASRKLVFSELHEA 1037
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+ F+E VL
Sbjct: 1038 SKQTGNPWVFEPEYPGKSRLFDGRTGDAFEEPVL 1071
>gi|139387452|ref|YP_001122806.1| RNA polymerase beta subunit [Phaseolus vulgaris]
gi|158513614|sp|A4GGA5.1|RPOB_PHAVU RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|112030974|gb|ABH88086.1| RNA polymerase beta subunit [Phaseolus vulgaris]
gi|158187149|gb|ABW22782.1| RNA polymerase beta subunit [Phaseolus vulgaris]
Length = 1070
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 57/91 (62%), Gaps = 23/91 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLSGGMLDKHYRITPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKE 93
K+T+NP K DG+ GN FK+
Sbjct: 908 SKKTSNPWIFEPEYPGKSKIFDGRTGNSFKQ 938
>gi|376008268|gb|AFB18343.1| RNA polymerase beta subunit [Lomandra longifolia]
Length = 1070
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+ F++ VL
Sbjct: 908 SKQTKNPWVFEPEYPGKSRIFDGRTGDSFEQPVL 941
>gi|194033140|ref|YP_002000478.1| RNA polymerase beta subunit [Brachypodium distachyon]
gi|193075548|gb|ACF08631.1| RNA polymerase beta subunit (chloroplast) [Brachypodium distachyon]
Length = 1076
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 854 VDVVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 913
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
K+T NP + DG+ G+PF++ VL
Sbjct: 914 SKETKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 947
>gi|186885835|gb|ACC93325.1| RNA polymerase beta subunit [Corymbium glabrum]
Length = 1024
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+ F++ V+
Sbjct: 862 SKQTANPWIFEPESPGKSRIFDGRTGDSFEQPVI 895
>gi|372481356|gb|AEX94353.1| RNA polymerase beta subunit (chloroplast) [Iris tenax]
Length = 1070
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 44/93 (47%), Positives = 56/93 (60%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYSA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHV 95
KQT NP + DG+ G+ F++ V
Sbjct: 908 SKQTKNPWVFEPEYPGKSRIFDGRTGDLFEQPV 940
>gi|156598504|gb|ABU85510.1| RNA polymerase beta subunit [Passiflora biflora]
Length = 1068
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 59/96 (61%), Gaps = 23/96 (23%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSL--------RHF-----DERYKQKGSRKLVLSKLY 70
+D++FNPL VP RMN+G IFECSL RH+ DERY+Q+ SRKLV S+LY
Sbjct: 846 GTVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPLDERYEQEASRKLVFSELY 905
Query: 71 KACKQTANP----------CKTLDGQMGNPFKEHVL 96
+A KQT+NP + DG+ G+ F++ +L
Sbjct: 906 EASKQTSNPWVFEPEYPGKSRLFDGRTGDSFEQPIL 941
>gi|153012213|ref|YP_001381728.1| RNA polymerase beta subunit [Medicago truncatula]
Length = 1070
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 57/94 (60%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G I ECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQILECSLGLAGSMLNRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT+NP DG+ GN F++ V+
Sbjct: 908 SKQTSNPWIFEPEYPGKSGIFDGRTGNLFEQPVI 941
>gi|408901805|gb|AFU95617.1| RpoB, partial (chloroplast) [Rhizophora mangle]
Length = 1108
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 61/95 (64%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 884 VDMVFNPLGVPSRMNVGQIFECSLGLAGNLLDRHYRIAPFDERYEQEASRKLVFSELYEA 943
Query: 73 CKQTA-NP----------CKTLDGQMGNPFKEHVL 96
KQT+ NP + LDG+ G+PF++ V+
Sbjct: 944 GKQTSXNPWVFEPEYPGKSRILDGRTGDPFEQPVI 978
>gi|408901753|gb|AFU95591.1| RpoB, partial (chloroplast) [Erythroxylum areolatum]
Length = 907
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 60/95 (63%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 683 VDMVFNPLGVPSRMNVGQIFECSLGLAGSFLDRHYRIAPFDERYEQEASRKLVFSELYEA 742
Query: 73 CKQTA-NP----------CKTLDGQMGNPFKEHVL 96
KQTA NP + DG+ G+PF++ V+
Sbjct: 743 SKQTAXNPWVFEPEYPGKSRIFDGRTGDPFEQPVI 777
>gi|408901735|gb|AFU95582.1| RpoB, partial (chloroplast) [Bhesa sp. CCD-2012]
Length = 1074
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 60/95 (63%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTA-NP----------CKTLDGQMGNPFKEHVL 96
KQTA NP + DG+ G+PF++ V+
Sbjct: 910 SKQTAXNPWVFEPEYPGKSRIFDGRTGDPFEQPVI 944
>gi|345895207|ref|YP_004841939.1| RNA polymerase beta subunit [Panicum virgatum]
gi|319412309|gb|ADV41845.1| RNA polymerase beta subunit (chloroplast) [Panicum virgatum]
gi|319412396|gb|ADV41931.1| RNA polymerase beta subunit (chloroplast) [Panicum virgatum]
Length = 1075
Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRK+V S+LY+A
Sbjct: 853 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKVVFSELYEA 912
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 913 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 946
>gi|408901731|gb|AFU95580.1| RpoB, partial (chloroplast) [Balanops pachyphylla]
Length = 1108
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 60/95 (63%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 884 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 943
Query: 73 CKQTA-NP----------CKTLDGQMGNPFKEHVL 96
KQTA NP + DG+ G+PF++ V+
Sbjct: 944 SKQTAXNPWVFEPEHPGKGRVFDGRTGDPFEQPVI 978
>gi|357470645|ref|XP_003605607.1| DNA-directed RNA polymerase subunit beta, partial [Medicago
truncatula]
gi|355506662|gb|AES87804.1| DNA-directed RNA polymerase subunit beta, partial [Medicago
truncatula]
Length = 2049
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+GHI ECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 229 VDMVFNPLGVPSRMNVGHILECSLGLAGSMLNRHYRIAPFDERYEQEASRKLVFSELYEA 288
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT+NP DG+ GN F++ V+
Sbjct: 289 SKQTSNPWIFEPEYPGKSGIFDGRTGNLFEQPVI 322
>gi|68053016|sp|Q589C0.1|RPOB_SILLA RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|62149315|dbj|BAD93457.1| RNA polymerase beta chain [Silene latifolia]
Length = 1070
Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYQA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT+ P + DG+ G+ F++ V+
Sbjct: 908 SKQTSEPWIFEPEYPGKSRIFDGRTGDLFEQPVI 941
>gi|374249942|ref|YP_005089569.1| rpoB gene product (chloroplast) [Silene latifolia]
gi|329755513|gb|AEC04076.1| RNA polymerase beta subunit (chloroplast) [Silene latifolia]
Length = 1070
Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYQA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT+ P + DG+ G+ F++ V+
Sbjct: 908 SKQTSEPWIFEPEYPGKSRIFDGRTGDLFEQPVI 941
>gi|408901791|gb|AFU95610.1| RpoB, partial (chloroplast) [Pera bumeliifolia]
Length = 882
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 60/95 (63%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 658 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 717
Query: 73 CKQTA-NP----------CKTLDGQMGNPFKEHVL 96
KQTA NP + DG+ G+PF++ V+
Sbjct: 718 SKQTAXNPWVFEPEYPGKSRIFDGRTGDPFEQPVI 752
>gi|262090292|ref|YP_002364492.2| RNA polymerase beta subunit [Festuca arundinacea]
gi|261410433|gb|ACJ70749.2| RNA polymerase beta subunit [Festuca arundinacea]
Length = 1079
Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 854 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 913
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
K+T NP + DG+ G+PF++ VL
Sbjct: 914 SKETKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 947
>gi|426406629|ref|YP_007026543.1| RNA polymerase beta subunit [Festuca ovina]
gi|410177843|gb|AFV62723.1| RNA polymerase beta subunit [Festuca ovina]
Length = 1076
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 854 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 913
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
K+T NP + DG+ G+PF++ VL
Sbjct: 914 SKETKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 947
>gi|159106854|ref|YP_001531273.1| rpoB gene product (chloroplast) [Lolium perenne]
gi|182676568|sp|A8Y9G0.1|RPOB_LOLPR RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|158934388|emb|CAO85966.1| RNA polymerase beta subunit (chloroplast) [Lolium perenne]
Length = 1076
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 854 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 913
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
K+T NP + DG+ G+PF++ VL
Sbjct: 914 SKETKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 947
>gi|376008252|gb|AFB18335.1| RNA polymerase beta subunit, partial [Georgeantha hexandra]
Length = 1176
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 56/94 (59%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G I ECSL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 941 VDMVFNPLGVPSRMNVGQILECSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 1000
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP DG+ G PF++ +L
Sbjct: 1001 SKQTKNPWVFEPEYPGKSILFDGRTGEPFEQPIL 1034
>gi|427437062|ref|YP_007026629.1| RNA polymerase beta subunit [Festuca pratensis]
gi|410177930|gb|AFV62809.1| RNA polymerase beta subunit [Festuca pratensis]
Length = 1076
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 854 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 913
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
K+T NP + DG+ G+PF++ VL
Sbjct: 914 SKETKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 947
>gi|427437208|ref|YP_007026715.1| RNA polymerase beta subunit [Lolium multiflorum]
gi|410178017|gb|AFV62895.1| RNA polymerase beta subunit [Lolium multiflorum]
Length = 1076
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 854 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 913
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
K+T NP + DG+ G+PF++ VL
Sbjct: 914 SKETKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 947
>gi|186885933|gb|ACC93374.1| RNA polymerase beta subunit [Plazia daphnoides]
Length = 1026
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE L RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 804 VDMVFNPLGVPSRMNVGQIFESLLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 863
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 864 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 897
>gi|186885801|gb|ACC93308.1| RNA polymerase beta subunit [Aphyllocladus spartioides]
Length = 1028
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE L RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 806 VDMVFNPLGVPSRMNVGQIFESLLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 865
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 866 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 899
>gi|408901789|gb|AFU95609.1| RpoB, partial (chloroplast) [Passiflora ciliata]
Length = 1107
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 59/94 (62%), Gaps = 24/94 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RHF-----DERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH+ DERY+Q+ SRKLV S+LY+A
Sbjct: 884 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPLDERYEQEASRKLVFSELYEA 943
Query: 73 CKQTA-NP----------CKTLDGQMGNPFKEHV 95
KQT+ NP + DG+ G+PF++ V
Sbjct: 944 SKQTSXNPWVFEPEYPGKSRIFDGRTGDPFEQPV 977
>gi|290489624|gb|ADD31196.1| RNA polymerase beta subunit protein [Rhododendron simsii]
Length = 1064
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 846 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEA 905
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + +G+ G+ F++ V+
Sbjct: 906 SKQTANPWVFEPEYPGKSRLFNGRTGDSFEQPVI 939
>gi|408901757|gb|AFU95593.1| RpoB, partial (chloroplast) [Euphronia guianensis]
Length = 1102
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 44/95 (46%), Positives = 59/95 (62%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G +FECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 878 VDMVLNPLGVPSRMNVGQLFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 937
Query: 73 CKQTA-NP----------CKTLDGQMGNPFKEHVL 96
KQTA NP + DG+ G+PF++ V+
Sbjct: 938 SKQTAXNPWVFEPEHPGKSRVFDGRTGDPFEQPVI 972
>gi|306411065|gb|ADM86138.1| RNA polymerase beta chain [Onoseris ilicifolia]
Length = 1017
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE L RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 795 VDMVFNPLGVPSRMNVGQIFESLLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 854
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 855 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 888
>gi|186885919|gb|ACC93367.1| RNA polymerase beta subunit [Onoseris hastata]
Length = 1028
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE L RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 806 VDMVFNPLGVPSRMNVGQIFESLLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 865
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 866 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 899
>gi|118430292|ref|YP_874726.1| RNA polymerase beta subunit [Agrostis stolonifera]
gi|125987640|sp|A1E9Z8.1|RPOB_AGRST RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|118201201|gb|ABK79570.1| RNA polymerase beta subunit [Agrostis stolonifera]
Length = 1076
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 854 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 913
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
K+T NP + DG+ G+PF++ VL
Sbjct: 914 SKETKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 947
>gi|427436965|ref|YP_007026457.1| RNA polymerase beta subunit [Festuca altissima]
gi|410177756|gb|AFV62637.1| RNA polymerase beta subunit [Festuca altissima]
Length = 1076
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 854 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 913
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
K+T NP + DG+ G+PF++ VL
Sbjct: 914 SKETKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 947
>gi|186885905|gb|ACC93360.1| RNA polymerase beta subunit [Lycoseris crocata]
Length = 1028
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE L RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 806 VDMVFNPLGVPSRMNVGQIFESLLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 865
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 866 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 899
>gi|408901773|gb|AFU95601.1| RpoB, partial (chloroplast) [Irvingia malayana]
Length = 1108
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 60/95 (63%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 884 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLNKHYRISPFDERYEQEASRKLVFSELYEA 943
Query: 73 CKQTA-NP----------CKTLDGQMGNPFKEHVL 96
KQTA NP + DG+ G+PF++ VL
Sbjct: 944 SKQTAXNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 978
>gi|14017562|ref|NP_114249.1| RNA polymerase beta subunit [Triticum aestivum]
gi|15214264|sp|Q9XPS7.1|RPOB_WHEAT RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|4958867|dbj|BAA78040.1| RNA polymerase subunit beta [Triticum aestivum]
gi|13928195|dbj|BAB47024.1| RNA polymerase beta subunit [Triticum aestivum]
Length = 1076
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 854 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 913
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
K+T NP + DG+ G+PF++ VL
Sbjct: 914 SKETKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 947
>gi|118430378|ref|YP_874643.1| RNA polymerase beta subunit [Hordeum vulgare subsp. vulgare]
gi|158512662|sp|A1E9I1.1|RPOB_HORVU RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|118201032|gb|ABK79403.1| RNA polymerase beta subunit [Hordeum vulgare subsp. vulgare]
Length = 1076
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 854 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 913
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
K+T NP + DG+ G+PF++ VL
Sbjct: 914 SKETKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 947
>gi|376008296|gb|AFB18356.1| RNA polymerase beta subunit [Thamnochortus insignis]
Length = 1077
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL +H FDERY+Q+ S+KLV S+LY+A
Sbjct: 855 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKKHYRIAPFDERYEQEASKKLVFSELYEA 914
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP DG+ G+PF++ VL
Sbjct: 915 SKQTRNPWVFEPEYPGKSGIFDGRTGDPFEQPVL 948
>gi|290489622|gb|ADD31195.1| RNA polymerase beta subunit protein [Phoradendron serotinum]
Length = 1072
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 56/94 (59%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G I ECSL RH FDERY+Q+ SRKLV S+LY A
Sbjct: 848 VDMVFNPLGVPSRMNVGQILECSLGLAGGMLDRHYRIGPFDERYEQEASRKLVFSELYNA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
QTANP + DG+ G+ F++ VL
Sbjct: 908 SNQTANPWVLEPEYPGKSRIFDGRKGDIFEQPVL 941
>gi|408901759|gb|AFU95594.1| RpoB, partial (chloroplast) [Flueggea suffruticosa]
Length = 1108
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 59/95 (62%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 884 VDMVCNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 943
Query: 73 CKQTA-NP----------CKTLDGQMGNPFKEHVL 96
CKQTA NP + DG+ G PF++ V+
Sbjct: 944 CKQTAXNPWVFEPEYPGKSRIFDGRTGEPFEQPVI 978
>gi|309322258|ref|YP_003934336.1| RNA polymerase beta subunit [Monsonia speciosa]
gi|197131680|gb|ACH47358.1| RNA polymerase beta subunit [Monsonia speciosa]
gi|300069351|gb|ADJ66471.1| RNA polymerase beta subunit [Monsonia speciosa]
Length = 1067
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+L++A
Sbjct: 845 VDMVFNPLGVPSRMNVGQIFECSLGLAGVLLDRHYRVAPFDERYEQEASRKLVFSELHEA 904
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP DG+ G+PF++ V+
Sbjct: 905 SKQTGNPWVFEPEYPGKSVLFDGRTGDPFQQPVI 938
>gi|395001667|ref|YP_006503684.1| RNA polymerase beta subunit (chloroplast) [Erycina pusilla]
gi|339431296|gb|AEJ72490.1| RNA polymerase beta subunit (chloroplast) [Erycina pusilla]
Length = 1070
Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNKHYRIGPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
K+T NP + DG+ G+ F++ VL
Sbjct: 908 SKKTKNPWVFEPEYPGKSRIFDGRTGDLFEQPVL 941
>gi|126165914|ref|YP_358570.2| RNA polymerase beta subunit [Phalaenopsis aphrodite subsp.
formosana]
gi|158518566|sp|Q3BAP8.2|RPOB_PHAAO RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
Length = 1070
Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKKHYRIGPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
K+T NP + DG+ G+ F++ VL
Sbjct: 908 SKKTKNPWVFEPEYPGKSRIFDGRTGDLFEQPVL 941
>gi|385153499|ref|YP_006073260.1| RNA polymerase beta subunit (chloroplast) [Phalaenopsis equestris]
gi|329668864|gb|AEB96311.1| RNA polymerase beta subunit (chloroplast) [Phalaenopsis equestris]
Length = 1091
Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 869 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKKHYRIGPFDERYEQEASRKLVFSELYEA 928
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
K+T NP + DG+ G+ F++ VL
Sbjct: 929 SKKTKNPWVFEPEYPGKSRIFDGRTGDLFEQPVL 962
>gi|115531906|ref|YP_784062.1| RNA polymerase beta subunit [Pelargonium x hortorum]
gi|122164288|sp|Q06FW9.1|RPOB_PELHO RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|112382060|gb|ABI17253.1| RNA polymerase beta subunit [Pelargonium x hortorum]
Length = 1079
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+++ SRKLV S+LY+A
Sbjct: 850 LDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEEEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP DG+ G+PF++ V+
Sbjct: 910 SKQTGNPWVFEPEYPGKSIIFDGRTGDPFEQPVI 943
>gi|58802775|gb|AAW82495.1| RNA polymerase beta chain [Phalaenopsis aphrodite subsp. formosana]
Length = 1091
Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 869 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKKHYRIGPFDERYEQEASRKLVFSELYEA 928
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
K+T NP + DG+ G+ F++ VL
Sbjct: 929 SKKTKNPWVFEPEYPGKSRIFDGRTGDLFEQPVL 962
>gi|295311724|ref|YP_003587460.1| RNA polymerase beta subunit [Oncidium Gower Ramsey]
gi|254833101|gb|ACT83104.1| RNA polymerase beta subunit [Oncidium Gower Ramsey]
Length = 1070
Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKKHYRIGPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
K+T NP + DG+ G+ F++ VL
Sbjct: 908 SKKTKNPWVFEPEYPGKSRIFDGRTGDLFEQPVL 941
>gi|218192606|gb|EEC75033.1| hypothetical protein OsI_11126 [Oryza sativa Indica Group]
Length = 870
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 648 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 707
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 708 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 741
>gi|408901775|gb|AFU95602.1| RpoB, partial (chloroplast) [Ixonanthes sp. CCD-2012]
Length = 962
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 60/95 (63%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
ID++FNPL VP RMN+G IFECSL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 738 IDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDKHYRIVPFDERYEQEASRKLVFSELYEA 797
Query: 73 CKQTA-NP----------CKTLDGQMGNPFKEHVL 96
KQTA NP + DG+ G+PF++ V+
Sbjct: 798 SKQTAXNPWVFEPEYPGKSRIFDGRTGDPFEQPVI 832
>gi|197131682|gb|ACH47359.1| RNA polymerase beta subunit [Sarcocaulon vanderietiae]
Length = 1067
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+L++A
Sbjct: 845 VDMVFNPLGVPSRMNVGQIFECSLGLAGVLLDRHYRVAPFDERYEQEASRKLVFSELHEA 904
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP DG+ G+PF++ V+
Sbjct: 905 SKQTGNPWVFEPEYPGKSVLFDGRTGDPFQQPVI 938
>gi|170784777|ref|YP_001718693.1| RNA polymerase beta subunit [Trachelium caeruleum]
gi|156598804|gb|ABU85655.1| RNA polymerase beta subunit [Trachelium caeruleum]
gi|157267525|gb|ABV26518.1| RNA polymerase beta subunit (chloroplast) [Trachelium caeruleum]
Length = 1070
Score = 82.8 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE L RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFESLLGLAGGLLDRHYRIGPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT+NP K DG+ G+PF++ V+
Sbjct: 908 GKQTSNPWVFEPEYPGKSKIFDGRTGDPFQQPVI 941
>gi|306411067|gb|ADM86139.1| RNA polymerase beta chain [Onoseris onoseroides]
Length = 1028
Score = 82.4 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE L RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 806 VDMVFNPLGVPSRMNVGQIFESLLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 865
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 866 SKQTANPWVFEPEYPGKSRIYDGRTGDPFEQPVI 899
>gi|408901743|gb|AFU95586.1| RpoB, partial (chloroplast) [Centroplacus glaucinus]
Length = 1108
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 24/94 (25%)
Query: 27 DIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKAC 73
D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 885 DMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEAS 944
Query: 74 KQTA-NP----------CKTLDGQMGNPFKEHVL 96
KQTA NP + DG+ G+PF++ V+
Sbjct: 945 KQTAXNPWVFEPEYPGKSRIFDGRKGDPFEQPVI 978
>gi|408901817|gb|AFU95623.1| RpoB, partial (chloroplast) [Vismia ferruginea]
Length = 1078
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 24/94 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 854 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEA 913
Query: 73 CKQTA-NP----------CKTLDGQMGNPFKEHV 95
KQTA NP + DG+ G+PF++ V
Sbjct: 914 SKQTAXNPWVFEPEYPGKSQLFDGRTGDPFEQPV 947
>gi|376008266|gb|AFB18342.1| RNA polymerase beta subunit, partial [Lilium superbum]
Length = 1076
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 56/94 (59%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV +LY+A
Sbjct: 854 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRVALFDERYEQEASRKLVFPELYEA 913
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT P K DG+ G+PF+ VL
Sbjct: 914 SKQTKKPWVFEPEYPGKSKIFDGRTGDPFEHPVL 947
>gi|408901779|gb|AFU95604.1| RpoB, partial (chloroplast) [Linum usitatissimum]
Length = 1108
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 58/95 (61%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL FDERY+Q+ SRKLV S+LY+A
Sbjct: 884 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDTHYRIAPFDERYEQEASRKLVFSELYEA 943
Query: 73 CKQTAN---------PCKTL--DGQMGNPFKEHVL 96
KQTA P KT+ DG+ G+PF+ V+
Sbjct: 944 SKQTAXNPWVFEPEYPGKTIIFDGRTGDPFERPVI 978
>gi|376008258|gb|AFB18338.1| RNA polymerase beta subunit, partial [Iris virginica]
Length = 1085
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 56/93 (60%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY A
Sbjct: 863 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYSA 922
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHV 95
KQT NP + DG+ G+ F++ V
Sbjct: 923 SKQTKNPWVFEPEYPGKSRIFDGRTGDLFEQPV 955
>gi|408901815|gb|AFU95622.1| RpoB, partial (chloroplast) [Viola pubescens]
Length = 1103
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 58/95 (61%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 880 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 939
Query: 73 CKQTA-----------NPCKTLDGQMGNPFKEHVL 96
K+TA + DG+ G+PF++ V+
Sbjct: 940 SKETAXKPWVFEPEYPGKSRIFDGRTGDPFEQPVI 974
>gi|408901777|gb|AFU95603.1| RpoB, partial (chloroplast) [Lacistema robustum]
Length = 1107
Score = 81.3 bits (199), Expect = 7e-14, Method: Composition-based stats.
Identities = 44/95 (46%), Positives = 57/95 (60%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G I ECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 884 VDMVFNPLGVPSRMNVGQILECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 943
Query: 73 CKQTA-NP----------CKTLDGQMGNPFKEHVL 96
KQT NP K DG+ +PF++ V+
Sbjct: 944 SKQTVXNPWVFEPEYPGKSKIFDGRTADPFEQPVI 978
>gi|408901745|gb|AFU95587.1| RpoB, partial (chloroplast) [Clusia rosea]
Length = 1108
Score = 81.3 bits (199), Expect = 7e-14, Method: Composition-based stats.
Identities = 44/95 (46%), Positives = 59/95 (62%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 884 VDMVFNPLGVPSRMNVGQIFESSLGLAGSLLDKHYRIAPFDERYEQEASRKLVFSELYEA 943
Query: 73 CKQTA-NP----------CKTLDGQMGNPFKEHVL 96
KQTA NP + DG+ G+PF++ V+
Sbjct: 944 SKQTAXNPWVFEPEYPGKSRIFDGRTGDPFEQPVI 978
>gi|357471497|ref|XP_003606033.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355507088|gb|AES88230.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 1748
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 57/94 (60%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G I ECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 835 VDMVFNPLGVPSRMNVGQILECSLGLAGSMLNRHYRIAPFDERYEQEASRKLVFSELYEA 894
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT+NP DG+ GN F++ V+
Sbjct: 895 SKQTSNPWIFEPEYPGKSGIFDGRTGNLFEQPVI 928
>gi|376008294|gb|AFB18355.1| RNA polymerase beta subunit [Syngonanthus chrysanthus]
Length = 1070
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 56/94 (59%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+DIIFNPL VP RMN+G I ECSL RH FDERY+Q+ SRKLV S+LY A
Sbjct: 848 LDIIFNPLGVPSRMNVGQILECSLGLAGDLLKRHYRIVPFDERYEQEASRKLVFSELYLA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+ F++ VL
Sbjct: 908 SKQTQNPWVFEPEYPGKSRIFDGRTGDLFEQPVL 941
>gi|441480325|gb|AGC38236.1| RNA polymerase beta subunit (chloroplast) [Cryptochloa
strictiflora]
Length = 1075
Score = 81.3 bits (199), Expect = 8e-14, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 57/94 (60%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 853 LDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 912
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+ F++ VL
Sbjct: 913 SKQTKNPWVFEPEYPGKSRIFDGRTGDSFEQPVL 946
>gi|374249696|ref|YP_005089326.1| rpoB gene product (chloroplast) [Silene vulgaris]
gi|329755678|gb|AEC04239.1| RNA polymerase beta subunit (chloroplast) [Silene vulgaris]
Length = 1068
Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 846 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYQA 905
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT+ P + DG+ G+ F++ V+
Sbjct: 906 SKQTSEPWIFEPEYPGKSRIFDGRTGDLFEQPVI 939
>gi|242061214|ref|XP_002451896.1| hypothetical protein SORBIDRAFT_04g009491 [Sorghum bicolor]
gi|241931727|gb|EES04872.1| hypothetical protein SORBIDRAFT_04g009491 [Sorghum bicolor]
Length = 289
Score = 80.9 bits (198), Expect = 8e-14, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 57/94 (60%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL V RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 51 VDMVFNPLGVSSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEA 110
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 111 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 144
>gi|306411069|gb|ADM86140.1| RNA polymerase beta chain [Urmenetea atacamensis]
Length = 1028
Score = 80.9 bits (198), Expect = 8e-14, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 57/94 (60%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE L RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 806 VDMVFNPLGVPSRMNVGQIFESLLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 865
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTA P + DG+ G+PF++ V+
Sbjct: 866 SKQTATPWVFEPEYPGKSRIFDGRTGDPFEQPVI 899
>gi|408901807|gb|AFU95618.1| RpoB, partial (chloroplast) [Schistostemon retusum]
Length = 1108
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 59/95 (62%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 884 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 943
Query: 73 CKQTA-NP----------CKTLDGQMGNPFKEHVL 96
KQTA NP + DG+ G+ F++ V+
Sbjct: 944 SKQTAXNPWVFEPEYPGKSRIFDGRTGDSFEQPVI 978
>gi|376008233|gb|AFB18326.1| RNA polymerase beta subunit [Centrolepis monogyna]
Length = 1064
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 56/94 (59%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G +FECSL +H FDERY+Q+ S+KL S+LY+A
Sbjct: 842 VDMVFNPLGVPSRMNVGQLFECSLGLAGDLLKKHYRITPFDERYEQEASKKLTFSELYEA 901
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ GN F + VL
Sbjct: 902 SKQTGNPWVFEPECPGKSRIFDGRTGNSFDQPVL 935
>gi|428697432|ref|YP_007025704.1| RNA polymerase beta subunit [California macrophylla]
Length = 1171
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
ID++FNPL VP RMN+G IFECSL +H FDERY+Q+ SRKLV S+L++A
Sbjct: 949 IDMVFNPLGVPSRMNVGQIFECSLGLAGVLLDKHYRVAPFDERYEQEASRKLVFSELHEA 1008
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+ F++ V+
Sbjct: 1009 SKQTGNPWVFEPEYPGKSRIFDGRTGDSFEQPVI 1042
>gi|110288943|gb|ABB47303.2| DNA-directed RNA polymerase beta chain, putative [Oryza sativa
Japonica Group]
Length = 1382
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 57/94 (60%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL +H FDERY+Q+ SRKLV S+LY+A
Sbjct: 669 VDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQETSRKLVFSELYEA 728
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF+ VL
Sbjct: 729 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEHPVL 762
>gi|408901727|gb|AFU95578.1| RpoB, partial (chloroplast) [Anthodiscus peruanus]
Length = 1108
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 57/95 (60%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+ + SRKLV S+LY+A
Sbjct: 884 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEXEASRKLVFSELYEA 943
Query: 73 CKQTA-----------NPCKTLDGQMGNPFKEHVL 96
KQTA + DG+ G+PF++ V+
Sbjct: 944 SKQTAXNLWVFEPEYPGKSRIFDGRTGDPFEQPVI 978
>gi|374249860|ref|YP_005089488.1| rpoB gene product (chloroplast) [Silene conica]
gi|329755431|gb|AEC03995.1| RNA polymerase beta subunit (chloroplast) [Silene conica]
Length = 1070
Score = 80.1 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 42/93 (45%), Positives = 56/93 (60%), Gaps = 23/93 (24%)
Query: 27 DIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKAC 73
D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 849 DMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYQAS 908
Query: 74 KQTANP----------CKTLDGQMGNPFKEHVL 96
KQT+ P + DG+ G+ ++ V+
Sbjct: 909 KQTSEPWIFEPEYPGKSRIFDGRTGDLLEQPVI 941
>gi|408901809|gb|AFU95619.1| RpoB, partial (chloroplast) [Scyphostegia borneensis]
Length = 1107
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 59/95 (62%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 884 VDMVFNPLGVPSRMNVGQIFESSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 943
Query: 73 CKQTA-NP----------CKTLDGQMGNPFKEHVL 96
KQTA NP + DG+ G+PF++ V+
Sbjct: 944 GKQTAXNPWVFEPECPGKSRIFDGRTGDPFEQPVI 978
>gi|408901797|gb|AFU95613.1| RpoB, partial (chloroplast) [Podocalyx loranthoides]
Length = 1107
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 59/95 (62%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 884 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIGPFDERYEQEASRKLVFSELYEA 943
Query: 73 CKQTA-NP----------CKTLDGQMGNPFKEHVL 96
KQTA NP + DG+ G+ F++ V+
Sbjct: 944 SKQTAXNPWVFEPEYPGKSRIFDGRTGDLFEQPVI 978
>gi|408901801|gb|AFU95615.1| RpoB, partial (chloroplast) [Drypetes roxburghii]
Length = 838
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 59/95 (62%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D+IFNPL VP RMN+G IFECSL RH FDERY+++ SRKLV S+LY+A
Sbjct: 615 VDMIFNPLGVPSRMNVGQIFECSLGFAGSLLNRHYRIAPFDERYEKEASRKLVFSELYEA 674
Query: 73 CKQTAN---------PCKTL--DGQMGNPFKEHVL 96
KQT P K++ DG+ G+ F++ VL
Sbjct: 675 SKQTGXNPWVFEPEYPGKSILFDGRTGDAFEQPVL 709
>gi|374249778|ref|YP_005089407.1| rpoB gene product (chloroplast) [Silene noctiflora]
gi|329755595|gb|AEC04157.1| RNA polymerase beta subunit (chloroplast) [Silene noctiflora]
Length = 1070
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G +FECSL RH FDER++Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQLFECSLGLAGGLLDRHYRIAPFDERFEQEASRKLVFSELYQA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT+ P + DG+ G+ F++ V+
Sbjct: 908 SKQTSEPWIFEPEYPGKSRIFDGRTGDLFEQPVI 941
>gi|220983464|dbj|BAH11233.1| RNA polymerase beta chain (chloroplast) [Welwitschia mirabilis]
Length = 1108
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 56/94 (59%), Gaps = 23/94 (24%)
Query: 25 NIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYK 71
++D++ NPL VP RMN+G IFEC L +H FDERY+Q+ SRKLV S+LYK
Sbjct: 885 SVDMVLNPLGVPSRMNVGQIFECLLGLAGTLTNKHYRIPPFDERYEQEASRKLVFSELYK 944
Query: 72 ACKQTANP----------CKTLDGQMGNPFKEHV 95
A +QTANP K DG+ G F++ V
Sbjct: 945 ASEQTANPWVFELEHLGKTKIFDGRTGEIFEQPV 978
>gi|187763097|ref|YP_001876572.1| RNA polymerase beta subunit [Welwitschia mirabilis]
gi|163311627|gb|ABY26785.1| RNA polymerase beta subunit [Welwitschia mirabilis]
Length = 1108
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 56/94 (59%), Gaps = 23/94 (24%)
Query: 25 NIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYK 71
++D++ NPL VP RMN+G IFEC L +H FDERY+Q+ SRKLV S+LYK
Sbjct: 885 SVDMVLNPLGVPSRMNVGQIFECLLGLAGTLTNKHYRIPPFDERYEQEASRKLVFSELYK 944
Query: 72 ACKQTANP----------CKTLDGQMGNPFKEHV 95
A +QTANP K DG+ G F++ V
Sbjct: 945 ASEQTANPWVFELEHLGKTKIFDGRTGEIFEQPV 978
>gi|408901781|gb|AFU95605.1| RpoB, partial (chloroplast) [Mammea americana]
Length = 937
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 58/95 (61%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 713 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 772
Query: 73 CKQTA-NP----------CKTLDGQMGNPFKEHVL 96
+QTA NP + DG+ G+ F + V+
Sbjct: 773 SRQTAXNPWVFEPEYPGKSRIFDGRTGDLFDQPVI 807
>gi|408901799|gb|AFU95614.1| RpoB, partial (chloroplast) [Podostemum ceratophyllum]
Length = 1107
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 58/95 (61%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
ID++ NPL VP RMN+G IFECSL +H FDE+Y+Q+ SRKLV S+LY+A
Sbjct: 884 IDMVLNPLGVPSRMNVGQIFECSLGFAGDFLEKHYRIGPFDEKYEQEASRKLVFSELYEA 943
Query: 73 CKQTA-NP----------CKTLDGQMGNPFKEHVL 96
KQT+ NP K DG+ G PF++ V+
Sbjct: 944 SKQTSXNPWVFEPEHPGKSKLFDGRTGEPFEQPVI 978
>gi|443267219|ref|YP_007374791.1| DNA-directed RNA polymerase subunit beta (chloroplast)
[Ophioglossum californicum]
gi|441017920|gb|AGC26704.1| DNA-directed RNA polymerase subunit beta (chloroplast)
[Ophioglossum californicum]
Length = 1062
Score = 77.8 bits (190), Expect = 7e-13, Method: Composition-based stats.
Identities = 42/95 (44%), Positives = 59/95 (62%), Gaps = 23/95 (24%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLY 70
+++D+I +PL VP RMN+G IFEC L RH FDERY+++ SRKLVLS+L+
Sbjct: 838 TSVDMILSPLGVPSRMNVGQIFECLLGLSGNFLQRHYRVTPFDERYEREASRKLVLSELF 897
Query: 71 KACKQTANP----------CKTLDGQMGNPFKEHV 95
A ++TANP + LDG+ GN F++ V
Sbjct: 898 GASRRTANPWLFEPDHPGKSQLLDGRSGNIFEQPV 932
>gi|347977242|dbj|BAK86738.1| RNA polymerase beta chain [Sciadopitys verticillata]
Length = 1083
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 57/93 (61%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC L +H FDERY+++ SRKLV S+LYKA
Sbjct: 861 VDMVLNPLGVPSRMNVGQIFECLLGLAGKLMHKHYRITPFDERYEREASRKLVFSELYKA 920
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ GN F++ V
Sbjct: 921 SEQTANPWAFEPDHPGKHRLIDGRTGNIFEQPV 953
>gi|186885829|gb|ACC93322.1| RNA polymerase beta subunit [Chrysanthemoides monilifera]
Length = 1024
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/94 (44%), Positives = 56/94 (59%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL V N+G IFE SL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 802 VDMVFNPLGVLHERNVGQIFESSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 861
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 862 SKQTANPWIFEPESPGKSRIFDGRTGDPFEQPVI 895
>gi|352950996|ref|YP_004891351.1| RNA polymerase beta chain (chloroplast) [Cephalotaxus wilsoniana]
gi|350529190|dbj|BAL03732.1| RNA polymerase beta chain (chloroplast) [Cephalotaxus wilsoniana]
Length = 1090
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 57/93 (61%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC L +H FDERY+++ SRKLV S+LYKA
Sbjct: 868 VDMVLNPLGVPSRMNVGQIFECLLGLAGKLMNKHYRIVPFDERYEREASRKLVFSELYKA 927
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 928 SEQTANPWLFEPDHPGKHRLIDGRTGDIFEQPV 960
>gi|172072925|ref|YP_001806686.1| RNA polymerase beta subunit [Cryptomeria japonica]
gi|171854944|dbj|BAG16684.1| RNA polymerase beta subunit [Cryptomeria japonica]
gi|239794312|dbj|BAH73309.1| RNA polymerase beta subunit [Cryptomeria japonica]
gi|239794395|dbj|BAH73391.1| RNA polymerase beta subunit [Cryptomeria japonica]
Length = 1083
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC L FDERY+++ SRKLV S+LYKA
Sbjct: 861 VDMVLNPLGVPSRMNVGQIFECLLGLAGKLMNKHYRLAPFDERYEREASRKLVFSELYKA 920
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 921 SEQTANPWVFEPDHPGKHRLIDGRTGKVFEQPV 953
>gi|443329629|ref|YP_007374707.1| DNA-directed RNA polymerase subunit beta (chloroplast) [Equisetum
hyemale]
gi|441017820|gb|AGC26620.1| DNA-directed RNA polymerase subunit beta (chloroplast) [Equisetum
hyemale]
Length = 1071
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 55/93 (59%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D+I +PL VP RMN+G IFEC L +H FDERY+++ SRKLV S+LY A
Sbjct: 848 VDMILSPLGVPSRMNVGQIFECLLGLAGNFLNKHYRIIPFDERYEREASRKLVFSELYDA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHV 95
KQT+NP + LDG+ G+ F + V
Sbjct: 908 SKQTSNPWLFEPDHPGKSQLLDGRTGDSFTQTV 940
>gi|222084193|ref|YP_002519787.1| RNA polymerase beta chain [Gnetum parvifolium]
gi|158513793|sp|A6BM50.1|RPOB_GNEPA RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|149941456|dbj|BAF64895.1| RNA polymerase beta subunit [Gnetum parvifolium]
gi|220983530|dbj|BAH11298.1| RNA polymerase beta chain (chloroplast) [Gnetum parvifolium]
Length = 1108
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 55/93 (59%), Gaps = 22/93 (23%)
Query: 25 NIDIIFNPLEVPPRMNIGHIFECSL-------RH-----FDERYKQKGSRKLVLSKLYKA 72
++D++ NPL VP RMN+G IFEC L +H FDERY+Q+ SRKLV +LYKA
Sbjct: 886 SLDMVLNPLSVPSRMNVGQIFECLLGLAGTMNKHYRIPPFDERYEQEASRKLVFYELYKA 945
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHV 95
+QTANP + DG+ G F++ V
Sbjct: 946 SEQTANPWIFELEHLGKTQIFDGRTGEIFEQPV 978
>gi|354991331|gb|AER45539.1| rpoB (chloroplast) [Halocarpus kirkii]
Length = 1089
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 60/103 (58%), Gaps = 25/103 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+ + R +D++ NPL VP RMN+G IFEC L +H FDERY+++ SR
Sbjct: 859 PYLQNGR--PVDMVLNPLGVPSRMNVGQIFECLLGLAGKLMNKHYRIAPFDERYEREASR 916
Query: 63 KLVLSKLYKACKQTANPC----------KTLDGQMGNPFKEHV 95
KLV S+LYKA +QTANP + +DG+ G F++ V
Sbjct: 917 KLVFSELYKASEQTANPWVFEPDHPGKHRLIDGRTGEIFEQPV 959
>gi|347977851|dbj|BAK86679.1| RNA polymerase beta chain [Nageia nagi]
Length = 1089
Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 55/93 (59%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D+I NPL VP RMN+G IFEC L RH FDERY+Q+ SRKLV S+LYKA
Sbjct: 865 VDMILNPLGVPSRMNVGQIFECLLGLAGKLMNRHYRIATFDERYEQEASRKLVFSELYKA 924
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
++T NP + +DG+ G F++ V
Sbjct: 925 SERTTNPWVFEPDHPGKHRLIDGRTGEVFEQPV 957
>gi|237688456|ref|YP_002905075.1| RNA polymerase beta subunit [Picea sitchensis]
gi|226875285|gb|ACO89024.1| RNA polymerase beta subunit [Picea sitchensis]
Length = 1076
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDERY+++ SRKLV +LYKA
Sbjct: 854 VDMVLNPLGVPSRMNVGQIFECLPGLAGNSMNKHYRITPFDERYEREASRKLVFPELYKA 913
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 914 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 946
>gi|372863282|gb|AEX99353.1| RpoB (chloroplast) [Taxus mairei]
gi|372863359|gb|AEX99429.1| RpoB (chloroplast) [Taxus mairei]
Length = 1092
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 56/93 (60%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC L +H FDERY+++ SRKLV S+LYKA
Sbjct: 870 VDMVLNPLGVPSRMNVGQIFECLLGLAGELMNKHYRIAPFDERYEREASRKLVFSELYKA 929
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 930 SEQTANPWVFEPDHPGKHRLIDGRTGEIFEQPV 962
>gi|452849127|ref|YP_007474804.1| RpoB (chloroplast) [Taxus mairei]
gi|372863523|gb|AEX99591.1| RpoB (chloroplast) [Taxus mairei]
Length = 1092
Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 56/93 (60%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC L +H FDERY+++ SRKLV S+LYKA
Sbjct: 870 VDMVLNPLGVPSRMNVGQIFECLLGLAGELMNKHYRIAPFDERYEREASRKLVFSELYKA 929
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 930 SEQTANPWVFEPDHPGKHRLIDGRTGEIFEQPV 962
>gi|377581218|gb|AFB70747.1| DNA-directed RNA polymerase subunit beta, partial (chloroplast)
[Mollugo verticillata]
Length = 759
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 36/63 (57%), Positives = 44/63 (69%), Gaps = 13/63 (20%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 697 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 756
Query: 73 CKQ 75
KQ
Sbjct: 757 SKQ 759
>gi|313183939|ref|YP_004021793.1| RNA polymerase beta subunit [Equisetum arvense]
gi|281371659|gb|ADA63592.1| RNA polymerase beta subunit (chloroplast) [Equisetum arvense]
gi|359751537|gb|AEV58331.1| RNA polymerase beta subunit [Equisetum arvense]
Length = 1071
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D+I +PL VP RMN+G IFEC L +H FDERY+++ SRKLV S+LY A
Sbjct: 848 VDMILSPLGVPSRMNVGQIFECLLGLAGNFLNKHYRIIPFDERYEREASRKLVFSELYDA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHV 95
KQT+NP + LDG+ G F + V
Sbjct: 908 SKQTSNPWLFEPDHPGKSQLLDGRTGESFNQTV 940
>gi|353351864|ref|YP_004891746.1| RNA polymerase beta chain (chloroplast) [Picea morrisonicola]
gi|307683667|dbj|BAJ19812.1| RNA polymerase beta chain [Picea morrisonicola]
gi|347977527|dbj|BAK86484.1| RNA polymerase beta chain (chloroplast) [Picea morrisonicola]
Length = 1076
Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDERY+++ SRKLV +LYKA
Sbjct: 854 VDMVLNPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDERYEREASRKLVFPELYKA 913
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 914 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 946
>gi|351653808|ref|YP_004891424.1| RNA polymerase beta chain (chloroplast) [Pseudotsuga sinensis var.
wilsoniana]
gi|307683479|dbj|BAJ19718.1| RNA polymerase beta chain [Pseudotsuga sinensis var. wilsoniana]
gi|347977642|dbj|BAK86597.1| RNA polymerase beta chain [Pseudotsuga sinensis var. wilsoniana]
Length = 1076
Score = 74.3 bits (181), Expect = 9e-12, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDERY+++ SRKLV +LYKA
Sbjct: 854 VDMVLNPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDERYEREASRKLVFPELYKA 913
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 914 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 946
>gi|356998480|gb|AET46371.1| RNA polymerase beta subunit (chloroplast) [Pseudotsuga menziesii
var. menziesii]
Length = 1076
Score = 74.3 bits (181), Expect = 9e-12, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDERY+++ SRKLV +LYKA
Sbjct: 854 VDMVLNPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDERYEREASRKLVFPELYKA 913
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 914 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 946
>gi|228017376|gb|ACP52193.1| RNA polymerase beta subunit [Larix occidentalis]
Length = 1076
Score = 74.3 bits (181), Expect = 9e-12, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDERY+++ SRKLV +LYKA
Sbjct: 854 VDMVLNPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDERYEREASRKLVFPELYKA 913
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 914 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 946
>gi|352950888|ref|YP_004891192.1| RNA polymerase beta chain (chloroplast) [Larix decidua]
gi|307683573|dbj|BAJ19765.1| RNA polymerase beta chain [Larix decidua]
gi|347977543|dbj|BAK86499.1| RNA polymerase beta chain (chloroplast) [Larix decidua]
Length = 1076
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDERY+++ SRKLV +LYKA
Sbjct: 854 VDMVLNPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDERYEREASRKLVFPELYKA 913
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 914 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 946
>gi|456061389|ref|YP_007475580.1| RpoB (chloroplast) [Podocarpus totara]
gi|354991335|gb|AER45541.1| rpoB (chloroplast) [Podocarpus totara]
gi|449020380|gb|AGE65876.1| RpoB (chloroplast) [Podocarpus totara]
Length = 1089
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 55/93 (59%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D+I NPL VP RMN+G IFEC L +H FDERY+Q+ SRKLV S+LYKA
Sbjct: 865 VDMILNPLGVPSRMNVGQIFECLLGLAGKLMNKHYRIATFDERYEQEASRKLVFSELYKA 924
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
++T NP + +DG+ G F++ V
Sbjct: 925 SERTTNPWVFEPDHPGKHRLIDGRTGEVFEQPV 957
>gi|222084087|ref|YP_002519540.1| RNA polymerase beta chain [Keteleeria davidiana]
gi|220983639|dbj|BAH11405.1| RNA polymerase beta chain (chloroplast) [Keteleeria davidiana]
Length = 1076
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 56/93 (60%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC L +H FDERY+++ SRKLV +LYKA
Sbjct: 854 VDMVLNPLGVPSRMNVGQIFECLLGLAGNLMNKHYRITPFDERYEREASRKLVFPELYKA 913
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 914 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 946
>gi|28202149|ref|NP_777390.1| RNA polymerase beta subunit [Anthoceros formosae]
gi|41017708|sp|Q85BW1.1|RPOB_ANTFO RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|27807851|dbj|BAC55326.1| RNA polymerase beta subunit (chloroplast) [Anthoceros formosae]
gi|27807944|dbj|BAC55416.1| RNA polymerase beta subunit [Anthoceros formosae]
Length = 1071
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/93 (43%), Positives = 56/93 (60%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++ +PL VP RMN+G IFEC L +H FDERY+++ SRKLV S+L++A
Sbjct: 849 VDMVLSPLGVPSRMNVGQIFECLLGLAGDFLQKHYRVTPFDERYEREASRKLVFSELHEA 908
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHV 95
+QTANP LDG+ G+ F+E V
Sbjct: 909 SRQTANPWLFESDNPGKSGLLDGRTGDIFEEPV 941
>gi|352951056|ref|YP_004891483.1| RNA polymerase beta chain (chloroplast) [Taiwania cryptomerioides]
gi|347977386|dbj|BAK86817.1| RNA polymerase beta chain (chloroplast) [Taiwania cryptomerioides]
Length = 1097
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ +PL VP RMN+G IFEC L FDERY+++ SRKLV S+LYKA
Sbjct: 875 VDMVLSPLGVPSRMNVGQIFECLLGLAGKLMNKHYRLTPFDERYEREASRKLVFSELYKA 934
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 935 SEQTANPWVFEPDHPGKHRLIDGRTGEVFEQPV 967
>gi|228017182|gb|ACP52002.1| RNA polymerase beta subunit [Pinus leiophylla var. chihuahuana]
gi|356996525|gb|AET44443.1| RNA polymerase beta subunit (chloroplast) [Pinus leiophylla var.
chihuahuana]
Length = 1074
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 852 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 911
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 912 SEQTANPLVFGPDHPGKHRLIDGRTGDVFEQPV 944
>gi|228016564|gb|ACP51394.1| RNA polymerase beta subunit [Abies firma]
Length = 1076
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDERY+++ SRKLV +LYKA
Sbjct: 854 VDMVLNPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDERYEREASRKLVFPELYKA 913
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 914 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 946
>gi|309322337|ref|YP_003934188.1| RNA polymerase beta chain [Cedrus deodara]
gi|307683263|dbj|BAJ19571.1| RNA polymerase beta chain (chloroplast) [Cedrus deodara]
Length = 1076
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDERY+++ SRKLV +LYKA
Sbjct: 854 VDMVLNPLGVPSRMNVGQIFECLPGLAGNLMKKHYRITPFDERYEREASRKLVFPELYKA 913
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 914 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 946
>gi|228017069|gb|ACP51891.1| RNA polymerase beta subunit [Cedrus deodara]
Length = 1076
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDERY+++ SRKLV +LYKA
Sbjct: 854 VDMVLNPLGVPSRMNVGQIFECLPGLAGNLMKKHYRITPFDERYEREASRKLVFPELYKA 913
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 914 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 946
>gi|228017004|gb|ACP51827.1| RNA polymerase beta subunit [Pinus canariensis]
Length = 1077
Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 855 VDMVLNPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDEKYEREASRKLVFPELYKA 914
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 915 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 947
>gi|309322404|ref|YP_003934484.1| RNA polymerase beta chain [Cathaya argyrophylla]
gi|307683330|dbj|BAJ19637.1| RNA polymerase beta chain (chloroplast) [Cathaya argyrophylla]
Length = 1076
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDERY+++ SRKLV +LYKA
Sbjct: 854 VDMVLNPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDERYEREASRKLVFPELYKA 913
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 914 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 946
>gi|228017445|gb|ACP52261.1| RNA polymerase beta subunit [Pinus merkusii]
Length = 1075
Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 945
>gi|228015990|gb|ACP50829.1| RNA polymerase beta subunit [Pinus resinosa]
Length = 1075
Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 945
>gi|347977366|dbj|BAK86800.1| RNA polymerase beta chain [Agathis dammara]
Length = 1092
Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLR-------------HFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC L FDERY+++ SRKLV S+LYKA
Sbjct: 870 VDMVLNPLGVPSRMNVGQIFECLLGLAGKLMNKNYRVVPFDERYEREASRKLVFSELYKA 929
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
++TANP + +DG+ G F++ V
Sbjct: 930 SERTANPWVFEPDHPGKHRLIDGRTGEIFEQPV 962
>gi|354991333|gb|AER45540.1| rpoB (chloroplast) [Agathis australis]
Length = 1093
Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLR-------------HFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC L FDERY+++ SRKLV S+LYKA
Sbjct: 871 VDMVLNPLGVPSRMNVGQIFECLLGLAGKLMNKNYRVVPFDERYEREASRKLVFSELYKA 930
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
++TANP + +DG+ G F++ V
Sbjct: 931 SERTANPWVFEPDHPGKHRLIDGRTGEIFEQPV 963
>gi|228016816|gb|ACP51642.1| RNA polymerase beta subunit [Pinus attenuata]
Length = 1074
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 56/93 (60%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC L +H FDE+Y+++ SRKLV +LYKA
Sbjct: 852 VDMVLNPLGVPSRMNVGQIFECLLGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 911
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 912 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 944
>gi|228016122|gb|ACP50959.1| RNA polymerase beta subunit [Pinus sibirica]
Length = 1075
Score = 71.6 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|228017123|gb|ACP51944.1| RNA polymerase beta subunit [Pinus cembra]
Length = 1075
Score = 71.6 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|237688588|ref|YP_002905205.1| RNA polymerase beta subunit [Pinus gerardiana]
gi|226876049|gb|ACO89305.1| RNA polymerase beta subunit [Pinus gerardiana]
Length = 1075
Score = 71.6 bits (174), Expect = 6e-11, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|228016179|gb|ACP51015.1| RNA polymerase beta subunit [Pinus squamata]
Length = 1075
Score = 71.6 bits (174), Expect = 6e-11, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|356997105|gb|AET45015.1| RNA polymerase beta subunit (chloroplast) [Pinus yunnanensis]
Length = 1075
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGXXGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 945
>gi|357001904|gb|AET49748.1| RNA polymerase beta subunit (chloroplast) [Pinus clausa]
Length = 1074
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 852 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 911
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 912 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 944
>gi|356997900|gb|AET45799.1| RNA polymerase beta subunit (chloroplast) [Pinus roxburghii]
Length = 1075
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 945
>gi|357000302|gb|AET48168.1| RNA polymerase beta subunit (chloroplast) [Pinus heldreichii]
Length = 1075
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 945
>gi|356996888|gb|AET44801.1| RNA polymerase beta subunit (chloroplast) [Pinus brutia]
gi|357000447|gb|AET48311.1| RNA polymerase beta subunit (chloroplast) [Pinus halepensis]
Length = 1075
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 945
>gi|357000665|gb|AET48526.1| RNA polymerase beta subunit (chloroplast) [Pinus fragilissima]
Length = 1075
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 945
>gi|356999572|gb|AET47448.1| RNA polymerase beta subunit (chloroplast) [Pinus massoniana]
Length = 1075
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 945
>gi|356999281|gb|AET47161.1| RNA polymerase beta subunit (chloroplast) [Pinus mugo]
Length = 1075
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 945
>gi|356998625|gb|AET46514.1| RNA polymerase beta subunit (chloroplast) [Pinus ponderosa var.
benthamiana]
Length = 1075
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 945
>gi|357000592|gb|AET48454.1| RNA polymerase beta subunit (chloroplast) [Pinus glabra]
Length = 1074
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 852 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 911
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 912 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 944
>gi|356999136|gb|AET47018.1| RNA polymerase beta subunit (chloroplast) [Pinus nigra]
Length = 1075
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 945
>gi|356998119|gb|AET46015.1| RNA polymerase beta subunit (chloroplast) [Pinus radiata]
Length = 1074
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 852 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 911
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 912 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 944
>gi|237688519|ref|YP_002905137.1| RNA polymerase beta subunit [Pinus contorta]
gi|226875348|gb|ACO89086.1| RNA polymerase beta subunit [Pinus contorta]
Length = 1074
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 852 VDMVLNPLGVPSRMNVGQIFECLPGLAGTPMNKHYRITPFDEKYEREASRKLVFPELYKA 911
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 912 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 944
>gi|357001758|gb|AET49604.1| RNA polymerase beta subunit (chloroplast) [Pinus coulteri]
Length = 1074
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 852 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 911
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 912 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 944
>gi|357001252|gb|AET49105.1| RNA polymerase beta subunit (chloroplast) [Pinus devoniana]
Length = 1074
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 852 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 911
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 912 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 944
>gi|356998698|gb|AET46586.1| RNA polymerase beta subunit (chloroplast) [Pinus pinea]
Length = 1075
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 945
>gi|356997537|gb|AET45441.1| RNA polymerase beta subunit (chloroplast) [Pinus taiwanensis]
Length = 1075
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 945
>gi|356996960|gb|AET44872.1| RNA polymerase beta subunit (chloroplast) [Pinus arizonica]
gi|356997175|gb|AET45084.1| RNA polymerase beta subunit (chloroplast) [Pinus yecorensis]
gi|356998552|gb|AET46442.1| RNA polymerase beta subunit (chloroplast) [Pinus ponderosa var.
scopulorum]
gi|356999063|gb|AET46946.1| RNA polymerase beta subunit (chloroplast) [Pinus pseudostrobus var.
apulcensis]
gi|356999426|gb|AET47304.1| RNA polymerase beta subunit (chloroplast) [Pinus montezumae]
gi|357000156|gb|AET48024.1| RNA polymerase beta subunit (chloroplast) [Pinus jeffreyi]
gi|357000738|gb|AET48598.1| RNA polymerase beta subunit (chloroplast) [Pinus engelmannii]
gi|357001031|gb|AET48887.1| RNA polymerase beta subunit (chloroplast) [Pinus douglasiana]
gi|357001106|gb|AET48961.1| RNA polymerase beta subunit (chloroplast) [Pinus hartwegii]
gi|357001831|gb|AET49676.1| RNA polymerase beta subunit (chloroplast) [Pinus arizonica var.
cooperi]
Length = 1074
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 852 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 911
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 912 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 944
>gi|357000374|gb|AET48239.1| RNA polymerase beta subunit (chloroplast) [Pinus hartwegii]
Length = 1074
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 852 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 911
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 912 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 944
>gi|228015921|gb|ACP50761.1| RNA polymerase beta subunit [Pinus ponderosa]
Length = 1074
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 852 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 911
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 912 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 944
>gi|357000010|gb|AET47880.1| RNA polymerase beta subunit (chloroplast) [Pinus kesiya]
gi|357000229|gb|AET48096.1| RNA polymerase beta subunit (chloroplast) [Pinus hwangshanensis]
gi|357001325|gb|AET49177.1| RNA polymerase beta subunit (chloroplast) [Pinus densata]
Length = 1075
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 945
>gi|7524615|ref|NP_042369.1| RNA polymerase beta subunit [Pinus thunbergii]
gi|1173150|sp|P41607.1|RPOB_PINTH RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|1262609|dbj|BAA04326.1| RNA polymerase beta subunit [Pinus thunbergii]
gi|356997610|gb|AET45513.1| RNA polymerase beta subunit (chloroplast) [Pinus sylvestris]
gi|357001398|gb|AET49249.1| RNA polymerase beta subunit (chloroplast) [Pinus densiflora]
Length = 1075
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 945
>gi|356999937|gb|AET47808.1| RNA polymerase beta subunit (chloroplast) [Pinus latteri]
Length = 1075
Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 945
>gi|356997755|gb|AET45656.1| RNA polymerase beta subunit (chloroplast) [Pinus serotina]
Length = 1074
Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 852 VDMVLNPLGVPSRMNVGQIFECLPGLAGNXMNKHYRITPFDEKYEREASRKLVFPELYKA 911
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 912 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 944
>gi|228017696|gb|ACP52508.1| RNA polymerase beta subunit [Pinus pinaster]
Length = 1075
Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 945
>gi|356999791|gb|AET47664.1| RNA polymerase beta subunit (chloroplast) [Pinus lawsonii]
gi|356999864|gb|AET47736.1| RNA polymerase beta subunit (chloroplast) [Pinus pringlei]
Length = 1074
Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 852 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 911
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 912 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 944
>gi|356999645|gb|AET47520.1| RNA polymerase beta subunit (chloroplast) [Pinus lumholtzii]
gi|356999718|gb|AET47592.1| RNA polymerase beta subunit (chloroplast) [Pinus leiophylla]
gi|357000519|gb|AET48382.1| RNA polymerase beta subunit (chloroplast) [Pinus greggii]
Length = 1074
Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 852 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 911
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 912 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 944
>gi|356996743|gb|AET44658.1| RNA polymerase beta subunit (chloroplast) [Pinus caribaea]
gi|356997973|gb|AET45871.1| RNA polymerase beta subunit (chloroplast) [Pinus rigida]
gi|356998844|gb|AET46730.1| RNA polymerase beta subunit (chloroplast) [Pinus patula]
gi|356998917|gb|AET46802.1| RNA polymerase beta subunit (chloroplast) [Pinus palustris]
Length = 1074
Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 852 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 911
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 912 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 944
>gi|228016940|gb|ACP51764.1| RNA polymerase beta subunit [Pinus banksiana]
Length = 1074
Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 852 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 911
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 912 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 944
>gi|228016505|gb|ACP51336.1| RNA polymerase beta subunit [Pinus torreyana subsp. torreyana]
Length = 1074
Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 852 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 911
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 912 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 944
>gi|356999209|gb|AET47090.1| RNA polymerase beta subunit (chloroplast) [Pinus muricata]
Length = 1074
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 852 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPXNKHYRITPFDEKYEREASRKLVFPELYKA 911
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 912 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 944
>gi|228016374|gb|ACP51207.1| RNA polymerase beta subunit [Pinus thunbergii]
Length = 1075
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 945
>gi|357000811|gb|AET48670.1| RNA polymerase beta subunit (chloroplast) [Pinus elliottii]
gi|357001685|gb|AET49532.1| RNA polymerase beta subunit (chloroplast) [Pinus cubensis]
Length = 1074
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 852 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 911
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 912 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 944
>gi|356998990|gb|AET46874.1| RNA polymerase beta subunit (chloroplast) [Pinus occidentalis]
Length = 1074
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 852 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 911
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 912 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 944
>gi|356998265|gb|AET46159.1| RNA polymerase beta subunit (chloroplast) [Pinus pungens]
Length = 1074
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 852 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 911
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 912 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 944
>gi|228016303|gb|ACP51137.1| RNA polymerase beta subunit [Pinus taeda]
Length = 1074
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 852 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 911
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 912 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 944
>gi|357000957|gb|AET48814.1| RNA polymerase beta subunit (chloroplast) [Pinus echinata]
Length = 1074
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 852 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 911
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 912 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 944
>gi|356997828|gb|AET45728.1| RNA polymerase beta subunit (chloroplast) [Pinus sabiniana]
Length = 1074
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 852 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 911
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 912 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 944
>gi|228016441|gb|ACP51273.1| RNA polymerase beta subunit [Pinus torreyana subsp. insularis]
Length = 1074
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 852 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 911
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 912 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 944
>gi|11466679|ref|NP_039275.1| RNA polymerase beta subunit [Marchantia polymorpha]
gi|133415|sp|P06272.1|RPOB_MARPO RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|11647|emb|CAA28061.1| rpoB [Marchantia polymorpha]
Length = 1065
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC------SLRH-------FDERYKQKGSRKLVLSKLYKA 72
ID+I +PL VP RMN+G IFEC S H FDERY+++ SRKLV S+LYKA
Sbjct: 843 IDMILSPLGVPSRMNVGQIFECLLGLAGSFLHKNYRIIPFDERYEREASRKLVFSELYKA 902
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
K+T NP + +DG+ G F++ +
Sbjct: 903 SKKTTNPWLFEPDNPGKNRLIDGRTGEIFEQPI 935
>gi|428697666|ref|YP_007026117.1| RNA polymerase beta subunit (chloroplast) [Pellia endiviifolia]
gi|408773080|gb|AFU88827.1| RNA polymerase beta subunit (chloroplast) [Pellia endiviifolia]
Length = 1065
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLR-------------HFDERYKQKGSRKLVLSKLYKA 72
ID++ +PL VP RMN+G IFEC L FDERY+++ SRKLV S+LYKA
Sbjct: 843 IDMVLSPLGVPSRMNVGQIFECLLGLAGYFLNKNYRIIPFDERYEREASRKLVFSELYKA 902
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
++ ANP K LDG+ G+ F++ +
Sbjct: 903 SERAANPWLFEPDNPGKNKLLDGRTGDIFEQPI 935
>gi|350996595|gb|AEQ37105.1| RNA polymerase beta subunit (chloroplast) [Ginkgo biloba]
Length = 1072
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFEC + F ERY+++ SRKLV +LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFGERYEREASRKLVFPELYRA 909
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 910 SEQTANPWVFEPDHPGKNRLIDGRTGDLFEQPV 942
>gi|380448695|ref|YP_005352699.1| rpoB gene product (chloroplast) [Ginkgo biloba]
gi|69216916|gb|AAZ03992.1| RNA polymerase beta chain [Ginkgo biloba]
gi|372862330|gb|AEX98412.1| RNA polymerase beta subunit (chloroplast) [Ginkgo biloba]
gi|372862753|gb|AEX98830.1| RNA polymerase beta subunit (chloroplast) [Ginkgo biloba]
gi|372862922|gb|AEX98997.1| RNA polymerase beta subunit (chloroplast) [Ginkgo biloba]
Length = 1072
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFEC + F ERY+++ SRKLV +LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFGERYEREASRKLVFPELYRA 909
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 910 SEQTANPWVFEPDHPGKNRLIDGRTGDLFEQPV 942
>gi|356996816|gb|AET44730.1| RNA polymerase beta subunit (chloroplast) [Pinus bungeana]
Length = 1075
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|380356162|dbj|BAL72584.1| RNA polymerase beta chain (chloroplast) [Ginkgo biloba]
Length = 1078
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFEC + F ERY+++ SRKLV +LY+A
Sbjct: 856 VDMVFNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFGERYEREASRKLVFPELYRA 915
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 916 SEQTANPWVFEPDHPGKNRLIDGRTGDLFEQPV 948
>gi|356999499|gb|AET47376.1| RNA polymerase beta subunit (chloroplast) [Pinus maximartinezii]
Length = 1075
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|356996670|gb|AET44586.1| RNA polymerase beta subunit (chloroplast) [Pinus cembroides]
Length = 1075
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|324986355|ref|YP_004276227.1| RNA polymerase beta subunit [Pinus lambertiana]
gi|323514204|gb|ADX89751.1| RNA polymerase beta subunit [Pinus lambertiana]
Length = 1075
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|228016687|gb|ACP51515.1| RNA polymerase beta subunit [Pinus aristata]
Length = 1075
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|356998046|gb|AET45943.1| RNA polymerase beta subunit (chloroplast) [Pinus remota]
gi|357000083|gb|AET47952.1| RNA polymerase beta subunit (chloroplast) [Pinus johannis]
gi|357001179|gb|AET49033.1| RNA polymerase beta subunit (chloroplast) [Pinus discolor]
gi|357001612|gb|AET49460.1| RNA polymerase beta subunit (chloroplast) [Pinus culminicola]
Length = 1075
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|356996597|gb|AET44514.1| RNA polymerase beta subunit (chloroplast) [Pinus chiapensis]
gi|356997683|gb|AET45585.1| RNA polymerase beta subunit (chloroplast) [Pinus strobiformis]
Length = 1075
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|324986498|ref|YP_004276368.1| RNA polymerase beta subunit [Pinus nelsonii]
gi|323522686|gb|ADX94934.1| RNA polymerase beta subunit [Pinus nelsonii]
Length = 1075
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|257042614|gb|ACV32885.1| RNA polymerase beta subunit [Pinus monticola]
Length = 1075
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|356998192|gb|AET46087.1| RNA polymerase beta subunit (chloroplast) [Pinus quadrifolia]
Length = 1075
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|228016244|gb|ACP51079.1| RNA polymerase beta subunit [Pinus strobus]
Length = 1075
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|357000884|gb|AET48742.1| RNA polymerase beta subunit (chloroplast) [Pinus edulis]
Length = 1075
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|324986427|ref|YP_004276298.1| RNA polymerase beta subunit [Pinus monophylla]
gi|323522522|gb|ADX94864.1| RNA polymerase beta subunit [Pinus monophylla]
Length = 1075
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|228017566|gb|ACP52380.1| RNA polymerase beta subunit [Pinus parviflora var. pentaphylla]
Length = 1075
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|29565582|ref|NP_817162.1| RNA polymerase beta subunit [Pinus koraiensis]
gi|41017711|sp|Q85X54.1|RPOB_PINKO RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|29469681|gb|AAO74009.1| RNA polymerase beta subunit [Pinus koraiensis]
gi|257042642|gb|ACV32912.1| RNA polymerase beta subunit [Pinus monticola]
gi|257042727|gb|ACV32994.1| RNA polymerase beta subunit [Pinus monticola]
gi|356997033|gb|AET44944.1| RNA polymerase beta subunit (chloroplast) [Pinus amamiana]
gi|356998338|gb|AET46231.1| RNA polymerase beta subunit (chloroplast) [Pinus pumila]
Length = 1075
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|228017630|gb|ACP52443.1| RNA polymerase beta subunit [Pinus peuce]
Length = 1075
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|237688656|ref|YP_002905272.1| RNA polymerase beta subunit [Pinus krempfii]
gi|226951114|gb|ACO94177.1| RNA polymerase beta subunit [Pinus krempfii]
Length = 1075
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|356998771|gb|AET46658.1| RNA polymerase beta subunit (chloroplast) [Pinus pinceana]
Length = 1075
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|357001471|gb|AET49321.1| RNA polymerase beta subunit (chloroplast) [Pinus dalatensis]
Length = 1075
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|228016058|gb|ACP50896.1| RNA polymerase beta subunit [Pinus rzedowskii]
Length = 1075
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNSMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|356997320|gb|AET45227.1| RNA polymerase beta subunit (chloroplast) [Pinus wallichiana]
Length = 1075
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNLMKKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|356997248|gb|AET45156.1| RNA polymerase beta subunit (chloroplast) [Pinus kwangtungensis]
Length = 1075
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|228016753|gb|ACP51580.1| RNA polymerase beta subunit [Pinus armandii]
Length = 1075
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|257042670|gb|ACV32939.1| RNA polymerase beta subunit [Pinus monticola]
Length = 1075
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|228017310|gb|ACP52128.1| RNA polymerase beta subunit [Pinus lambertiana]
Length = 1075
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|228017244|gb|ACP52063.1| RNA polymerase beta subunit [Pinus flexilis]
Length = 1075
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|257042555|gb|ACV32828.1| RNA polymerase beta subunit [Pinus monticola]
Length = 1075
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|228016876|gb|ACP51701.1| RNA polymerase beta subunit [Pinus ayacahuite]
Length = 1075
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|228017503|gb|ACP52318.1| RNA polymerase beta subunit [Pinus monticola]
Length = 1075
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|228016620|gb|ACP51449.1| RNA polymerase beta subunit [Pinus albicaulis]
Length = 1075
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|356999354|gb|AET47233.1| RNA polymerase beta subunit (chloroplast) [Pinus morrisonicola]
Length = 1075
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|257042584|gb|ACV32856.1| RNA polymerase beta subunit [Pinus monticola]
Length = 1075
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|257042699|gb|ACV32967.1| RNA polymerase beta subunit [Pinus monticola]
Length = 1075
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|357001543|gb|AET49392.1| RNA polymerase beta subunit (chloroplast) [Pinus fenzeliana var.
dabeshanensis]
Length = 1075
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|257042754|gb|ACV33020.1| RNA polymerase beta subunit [Pinus monticola]
Length = 1075
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|257042527|gb|ACV32801.1| RNA polymerase beta subunit [Pinus monticola]
Length = 1075
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|257042782|gb|ACV33047.1| RNA polymerase beta subunit [Pinus monticola]
Length = 1075
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VDMVLNPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPV 945
>gi|222139883|ref|YP_002519950.1| RNA polymerase beta chain (chloroplast) [Ephedra equisetina]
gi|220983551|dbj|BAH11318.1| RNA polymerase beta chain (chloroplast) [Ephedra equisetina]
Length = 1100
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 51/93 (54%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLR-------------HFDERYKQKGSRKLVLSKLYKA 72
+D+I NPL VP RMN+G IFEC L FDERY+Q+ SRKLV ++L+KA
Sbjct: 871 VDMILNPLGVPSRMNVGQIFECLLGLAGTLMNKQYRIPPFDERYEQEASRKLVFNELHKA 930
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHV 95
+QT NP K DG+ G ++ V
Sbjct: 931 SEQTVNPWVFELEHLGKTKIFDGKTGEILEQPV 963
>gi|313199657|ref|YP_004021273.1| RNA polymerase beta subunit [Isoetes flaccida]
gi|291575386|gb|ADE18099.1| RNA polymerase beta subunit [Isoetes flaccida]
Length = 1072
Score = 69.3 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
ID+I +PL VP RMN+G IFEC L RH FDERY+++ RKLV + ++A
Sbjct: 850 IDMILSPLGVPSRMNVGQIFECVLGIAGDFLRRHYRVMPFDERYEREAPRKLVFPEPHEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 910 SRQTANPWSFELDNPGKSRLIDGRTGDIFEQPV 942
>gi|34501436|ref|NP_904223.1| RNA polymerase beta subunit [Physcomitrella patens subsp. patens]
gi|41017602|sp|P60283.1|RPOB_PHYPA RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|34494806|dbj|BAC85073.1| RNA polymerase beta subunit [Physcomitrella patens subsp. patens]
Length = 1085
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 56/93 (60%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
ID++ +PL VP RMN+G IFEC L +H FDE+Y+++ SRKLV S+LYKA
Sbjct: 863 IDMVLSPLGVPSRMNVGQIFECLLGLAGYFLGKHYRITPFDEKYEREASRKLVFSELYKA 922
Query: 73 CKQTA--------NPCKT--LDGQMGNPFKEHV 95
K+T NP K+ L+G+ G F++ V
Sbjct: 923 SKKTGNLWLFEPENPGKSRLLNGRTGEIFEQAV 955
>gi|60393870|sp|Q85FM7.2|RPOB_ADICA RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|48995173|gb|AAP29384.3| RNA polymerase beta chain (chloroplast) [Adiantum capillus-veneris]
Length = 1071
Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D+I +PL VP RMN+G IFEC L H FDERY+++ SRKLV ++L++A
Sbjct: 849 VDMILSPLGVPSRMNVGQIFECLLGLAGEFLETHYRVVPFDERYEREASRKLVFAELHEA 908
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHV 95
+T NP + +DG+ G+PF + +
Sbjct: 909 GARTNNPWLFEPSHPGKSRLIDGRTGDPFGQSI 941
>gi|301353339|ref|YP_003795572.1| RNA polymerase beta subunit [Pteridium aquilinum subsp. aquilinum]
gi|301016257|gb|ADK47544.1| RNA polymerase beta subunit [Pteridium aquilinum subsp. aquilinum]
Length = 1071
Score = 68.2 bits (165), Expect = 6e-10, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RHF-----DERYKQKGSRKLVLSKLYKA 72
+D+I +PL VP RMN+G IFEC L H+ DERY+++ SRKLV S+ Y+A
Sbjct: 849 VDMILSPLGVPSRMNVGQIFECLLGLAGEFPETHYRIVPLDERYEREASRKLVFSEPYRA 908
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHV 95
+ NP + +DG+ GNPF + +
Sbjct: 909 SVSSHNPWLFEPDHPGKSRLIDGRTGNPFAQPI 941
>gi|330850611|ref|YP_004376492.1| RNA polymerase beta subunit [Ptilidium pulcherrimum]
gi|302024740|gb|ADK89586.1| RNA polymerase beta subunit [Ptilidium pulcherrimum]
Length = 1063
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLR-------------HFDERYKQKGSRKLVLSKLYKA 72
ID+I +PL VP RMN+G IFEC L FDERY+++ SRKLV S+LY+A
Sbjct: 841 IDMILSPLGVPSRMNVGQIFECLLGLAGYFLNKNYRIIPFDERYEREASRKLVFSELYEA 900
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHV 95
++T NP + DG+ G F++ +
Sbjct: 901 SEKTVNPWLFEPANPGKSRLFDGRTGEIFEQPI 933
>gi|156598002|gb|ABU85267.1| RNA polymerase beta subunit [Cycas micronesica]
Length = 1066
Score = 67.8 bits (164), Expect = 8e-10, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 23/95 (24%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFEC--------SLRH-----FDERYKQKGSRKLVLSKLY 70
+++D++ NPL V RMN+G IFEC RH FDERY+++ SRKLV +LY
Sbjct: 842 TSVDMVLNPLGVLSRMNVGQIFECLPGLAGNLMNRHYRITPFDERYEREASRKLVFPELY 901
Query: 71 KACKQTANPC----------KTLDGQMGNPFKEHV 95
A ++TANP + +DG+ G+ F++ V
Sbjct: 902 GASERTANPWVFEPNHPGKNRLIDGRTGDTFEQPV 936
>gi|356997464|gb|AET45369.1| RNA polymerase beta subunit (chloroplast) [Pinus tropicalis]
Length = 1075
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+ + NPL VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA
Sbjct: 853 VXXVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKA 912
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+QTANP + +DG+ G+ F++ V
Sbjct: 913 SEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPV 945
>gi|242910198|ref|YP_002970636.1| RNA polymerase b-subunit [Alsophila spinulosa]
gi|218454867|gb|ACK77204.1| RNA polymerase b-subunit [Alsophila spinulosa]
Length = 1082
Score = 67.8 bits (164), Expect = 8e-10, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D+I +PL VP RMN+G IFEC L H FDERY+++ SRKLV S+L A
Sbjct: 860 VDMILSPLGVPSRMNVGQIFECLLGLAGEFLKTHYRIVPFDERYEREASRKLVFSELCGA 919
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHV 95
T NP + +DG+ G+PF++ +
Sbjct: 920 STGTRNPWLFEPEHPGKSRLIDGRTGDPFEQPI 952
>gi|68053052|sp|Q5SCX8.1|RPOB_HUPLU RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|50660025|gb|AAT80747.1| RNA polymerase beta subunit (chloroplast) [Huperzia lucidula]
Length = 1080
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 55/93 (59%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
I++I +PL VP RMN+G IFEC L RH FDERY+++ SRKLV S+L KA
Sbjct: 859 IEMILSPLGVPSRMNVGQIFECLLGLAGGFLKRHYRVIPFDERYEREASRKLVFSELNKA 918
Query: 73 CKQTA--------NPCKTL--DGQMGNPFKEHV 95
+QT NP K+L DG+ G F++ +
Sbjct: 919 GEQTTNPWLFELDNPGKSLLIDGRTGEIFQQPI 951
>gi|126165904|ref|YP_209551.2| RNA polymerase beta subunit [Huperzia lucidula]
Length = 1078
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 55/93 (59%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
I++I +PL VP RMN+G IFEC L RH FDERY+++ SRKLV S+L KA
Sbjct: 857 IEMILSPLGVPSRMNVGQIFECLLGLAGGFLKRHYRVIPFDERYEREASRKLVFSELNKA 916
Query: 73 CKQTA--------NPCKTL--DGQMGNPFKEHV 95
+QT NP K+L DG+ G F++ +
Sbjct: 917 GEQTTNPWLFELDNPGKSLLIDGRTGEIFQQPI 949
>gi|169142779|ref|YP_001687204.1| RNA polymerase beta subunit [Aneura mirabilis]
gi|153973805|gb|ABS54465.1| RNA polymerase beta subunit [Aneura mirabilis]
Length = 1065
Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RHF-----DERYKQKGSRKLVLSKLYKA 72
+D+I +PL VP RMN+G I EC L +++ DERY+Q+ SRKLV S+LY+A
Sbjct: 843 MDMILSPLGVPSRMNVGQILECLLGLAGYFLNKNYRITPSDERYEQESSRKLVFSELYRA 902
Query: 73 CKQTANPC----------KTLDGQMGNPFKEHV 95
+ T+NP + LDG+ G F++ V
Sbjct: 903 SEITSNPWLFEPNNPGKNRLLDGRTGEAFEQPV 935
>gi|18860303|ref|NP_569621.1| RNA polymerase beta subunit [Psilotum nudum]
gi|41017771|sp|Q8WI24.1|RPOB_PSINU RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|18389456|dbj|BAB84208.1| RNA polymerase subunit beta [Psilotum nudum]
gi|441018009|gb|AGC26785.1| DNA-directed RNA polymerase subunit beta (chloroplast) [Psilotum
nudum]
Length = 1066
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D+I +PL VP RMN+G IFEC L RH FDER++++ SRKLV S+L +A
Sbjct: 844 VDMILSPLGVPSRMNVGQIFECLLGLAGDFMQRHYRITPFDERFEREASRKLVFSELCEA 903
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHV 95
++T NP + +DG+ G+ F++ V
Sbjct: 904 SEKTRNPWLFEPDYPGKSRLIDGRTGDTFEQPV 936
>gi|124302897|ref|YP_001023692.1| RNA polymerase beta subunit [Angiopteris evecta]
gi|158512822|sp|A2T324.1|RPOB_ANGEV RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|110628295|gb|ABG79591.1| RNA polymerase beta subunit [Angiopteris evecta]
Length = 1070
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 55/93 (59%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D+I +PL VP RMN+G IFEC L +H FDERY+++ SRKLV S+L++A
Sbjct: 848 VDMILSPLGVPSRMNVGQIFECLLGLAGDILKKHYRITPFDERYEREASRKLVFSELHEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHV 95
++ A P + +DG+ G+ F++ V
Sbjct: 908 SQEAAIPWLFEPDHPGKSRLIDGRTGDIFEQPV 940
>gi|30352026|ref|NP_848052.1| RNA polymerase beta subunit [Adiantum capillus-veneris]
Length = 1071
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D+I +PL VP RMN+G IFEC L H FDERY+++ SRKLV ++ ++A
Sbjct: 849 VDMILSPLGVPSRMNVGQIFECLLGLAGEFSETHYRVVPFDERYEREASRKLVFAEPHEA 908
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHV 95
+T NP + +DG+ G+PF + +
Sbjct: 909 GARTNNPWLFEPSHPGKSRLIDGRTGDPFGQSI 941
>gi|124112108|ref|YP_001019104.1| beta subunit of RNA polymerase [Chlorokybus atmophyticus]
gi|158564117|sp|Q19V98.2|RPOB_CHLAT RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|124012217|gb|ABD62240.2| beta subunit of RNA polymerase [Chlorokybus atmophyticus]
Length = 1088
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G ++EC L FDE Y ++ SR V SKLY+A
Sbjct: 864 VDMVLNPLGVPSRMNVGQVYECLLGLAGHFLGEEYKLIPFDEMYGKEASRGFVYSKLYEA 923
Query: 73 CKQT--------ANPCKT--LDGQMGNPFKEHV 95
K+T ANP K+ DG+ G PF + V
Sbjct: 924 RKKTGYPWLFDIANPGKSQLFDGRTGEPFDQPV 956
>gi|108796736|ref|YP_636566.1| RNA polymerase beta subunit [Zygnema circumcarinatum]
gi|88909648|sp|Q32RG0.1|RPOB_ZYGCR RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|61393720|gb|AAX45862.1| beta subunit of RNA polymerase [Zygnema circumcarinatum]
Length = 1063
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++ +PL VP RMN+G +FEC L +H FDERY ++ SRKLV S+LYKA
Sbjct: 839 VDMVLSPLGVPSRMNVGQVFECLLGLAGGYLNQHYRIMPFDERYGRESSRKLVFSELYKA 898
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHV 95
+ T P + DG+ G F + V
Sbjct: 899 SQTTNYPWIFEPDSPGKSRLFDGRTGEVFNQPV 931
>gi|22711962|ref|NP_683774.1| RNA polymerase beta subunit [Chaetosphaeridium globosum]
gi|41017759|sp|Q8MA12.1|RPOB_CHAGL RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|22416966|gb|AAM96566.1| beta subunit of RNA polymerase [Chaetosphaeridium globosum]
Length = 1070
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 51/95 (53%), Gaps = 23/95 (24%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLY 70
++ID++ +PL VP RMN+G I EC L FDERY+++ SRKLVLS+L+
Sbjct: 846 TSIDMVLSPLGVPSRMNVGQILECLLGFAGKFLNKNYRITPFDERYEREASRKLVLSELH 905
Query: 71 KACKQTANP----------CKTLDGQMGNPFKEHV 95
KA K T P + DG+ G F + V
Sbjct: 906 KAKKLTGYPWLLEPENAGKSRLFDGRTGETFNQPV 940
>gi|452848988|ref|YP_007474667.1| RNA polymerase beta subunit (chloroplast) [Cycas revoluta]
gi|372863143|gb|AEX99216.1| RNA polymerase beta subunit (chloroplast) [Cycas revoluta]
Length = 1072
Score = 64.7 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 36/95 (37%), Positives = 54/95 (56%), Gaps = 23/95 (24%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFEC--------SLRH-----FDERYKQKGSRKLVLSKLY 70
+++D++ NPL V RMN+G IFEC RH FDERY+++ SRK V +LY
Sbjct: 848 TSVDMVLNPLGVLSRMNVGQIFECLPGLAGNLMNRHYRITPFDERYEREASRKPVFPELY 907
Query: 71 KACKQTANPC----------KTLDGQMGNPFKEHV 95
A ++TANP + +DG+ G+ F++ V
Sbjct: 908 GASERTANPWVFEPNHPGKNRLIDGRTGDTFEQPV 942
>gi|308745991|ref|YP_003934550.1| RNA polymerase beta subunit [Cheilanthes lindheimeri]
gi|302375424|gb|ADL29798.1| RNA polymerase beta subunit [Cheilanthes lindheimeri]
Length = 1076
Score = 64.3 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D+I +PL VP RMN+G IFEC L H FDERY+++ SRKLV ++L++A
Sbjct: 854 VDMILSPLGVPSRMNVGQIFECLLGLAGEFLETHYRIVPFDERYEREASRKLVFAELHEA 913
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHV 95
+T NP + +DG+ G+ F + +
Sbjct: 914 GARTNNPWLFEPSHPGKSRLIDGRTGDSFGQPI 946
>gi|150251451|ref|YP_001312184.1| RNA polymerase beta chain [Cycas taitungensis]
gi|158513731|sp|A6H5F9.1|RPOB_CYCTA RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|149941501|dbj|BAF64925.1| RNA polymerase beta chain (chloroplast) [Cycas taitungensis]
Length = 1072
Score = 64.3 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 23/95 (24%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFEC--------SLRH-----FDERYKQKGSRKLVLSKLY 70
+++D++ NPL V RMN+G IFEC RH FDERY+++ SRK V +LY
Sbjct: 848 TSVDMVLNPLGVLSRMNVGQIFECLPGLAGNLMNRHYRITPFDERYEREASRKPVFPELY 907
Query: 71 KACKQTANPC----------KTLDGQMGNPFKEHV 95
A +QTANP + +DG+ G+ ++ V
Sbjct: 908 GASEQTANPWVFEPNHPGKNRLIDGRTGDTLEQPV 942
>gi|350529115|dbj|BAL03676.1| RNA polymerase beta chain [Bowenia serrulata]
Length = 1072
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 42/67 (62%), Gaps = 13/67 (19%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC--------SLRH-----FDERYKQKGSRKLVLSKLYKA 72
+D++ NPL V RMN+G IFEC RH FDERY+++ SRKLV +LY+
Sbjct: 850 VDMVLNPLGVLSRMNVGQIFECLPGLAGNLMNRHYRITPFDERYEREASRKLVFPELYRT 909
Query: 73 CKQTANP 79
++TANP
Sbjct: 910 SERTANP 916
>gi|282895797|ref|ZP_06303884.1| DNA-directed RNA polymerase, beta subunit [Raphidiopsis brookii D9]
gi|281199297|gb|EFA74163.1| DNA-directed RNA polymerase, beta subunit [Raphidiopsis brookii D9]
Length = 1133
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L FDE Y ++ SR++V KL++A
Sbjct: 882 VDIVLNPLGVPSRMNVGQVFECLLGWAGHNLGVRFKITPFDEMYGEESSRRIVHGKLWEA 941
Query: 73 CKQTA--------NPCKTL--DGQMGNPFKEHV 95
++T+ NP K + DG+ G PF V
Sbjct: 942 REETSRDWVYNPENPGKIMVYDGRTGEPFDRAV 974
>gi|282900416|ref|ZP_06308366.1| DNA-directed RNA polymerase, beta subunit [Cylindrospermopsis
raciborskii CS-505]
gi|281194729|gb|EFA69676.1| DNA-directed RNA polymerase, beta subunit [Cylindrospermopsis
raciborskii CS-505]
Length = 1113
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L FDE Y ++ SR++V KL++A
Sbjct: 862 VDIVLNPLGVPSRMNVGQVFECLLGWAGHNLGVRFKITPFDEMYGEESSRRIVHGKLWEA 921
Query: 73 CKQTA--------NPCKTL--DGQMGNPFKEHV 95
++T+ NP K + DG+ G PF V
Sbjct: 922 REETSKDWVYNPENPGKIMVYDGRTGEPFDRAV 954
>gi|194033330|ref|YP_002000391.1| beta subunit of RNA polymerase fragment 2 [Oedogonium cardiacum]
gi|156619054|gb|ABU88205.1| RNA polymerase beta subunit [Oedogonium cardiacum]
gi|186968947|gb|ACC97270.1| beta subunit of RNA polymerase fragment 2 [Oedogonium cardiacum]
Length = 739
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 52/104 (50%), Gaps = 25/104 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSLRH-------------FDERYKQKGSR 62
P+ F +D++ NPL VP RMN+G I+EC L FDE+ ++ SR
Sbjct: 521 PYLADGSF--VDLVLNPLGVPSRMNVGQIYECLLGLAGYYLGEYYRILPFDEKIGEEASR 578
Query: 63 KLVLSKLYKACKQTA--------NPCKT--LDGQMGNPFKEHVL 96
V SKLY+A +T NP KT DG+ G F++ V+
Sbjct: 579 SFVFSKLYEAGMKTGNYWLFDPKNPGKTYLFDGRTGEKFEQQVM 622
>gi|356997392|gb|AET45298.1| RNA polymerase beta subunit (chloroplast) [Pinus virginiana]
Length = 1075
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 23/87 (26%)
Query: 32 PLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKACKQTAN 78
P+ VP RMN+G IFEC + FDE+Y+++ SRKLV +LYKA +QTAN
Sbjct: 859 PIGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKASEQTAN 918
Query: 79 PC----------KTLDGQMGNPFKEHV 95
P + +DG+ G+ F++ V
Sbjct: 919 PWVFEPDHPGKHRLIDGRTGDVFEQPV 945
>gi|11466382|ref|NP_038385.1| RNA polymerase beta subunit [Mesostigma viride]
gi|13878753|sp|Q9MUS5.1|RPOB_MESVI RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|7259525|gb|AAF43826.1|AF166114_38 beta subunit of RNA polymerase (chloroplast) [Mesostigma viride]
Length = 1080
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 47/93 (50%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G +FEC L FDE Y ++ SR LV SKLY+A
Sbjct: 856 VDMVLNPLGVPSRMNVGQVFECLLGLAGEYLSENYKLMPFDEMYGKETSRGLVYSKLYEA 915
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHV 95
++T P K DG+ G F + V
Sbjct: 916 RQKTGYPWLFNIQSPGKSKLFDGRTGESFDQPV 948
>gi|7524891|ref|NP_045893.1| RNA polymerase beta'' chain [Chlorella vulgaris]
gi|3024561|sp|P56299.1|RPOB_CHLVU RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|2224485|dbj|BAA57969.1| RNA polymerase beta subunit [Chlorella vulgaris]
Length = 1301
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 48/93 (51%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL---------RH----FDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G I EC L R+ FDE+Y + SR LV SKLY+A
Sbjct: 1066 VDIVLNPLGVPSRMNVGQILECLLGLAGHFLHERYTTYLFDEQYGAEASRSLVYSKLYQA 1125
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHV 95
+T NP + DG+ G F + +
Sbjct: 1126 SLKTRNPWVFEPHHPGKIRVFDGRTGLTFDQPI 1158
>gi|331268125|ref|YP_004347774.1| beta subunit of RNA polymerase [Chlorella variabilis]
gi|325296302|gb|ADZ05022.1| beta subunit of RNA polymerase [Chlorella variabilis]
Length = 1358
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 47/93 (50%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
IDI+ NPL VP RMN+G I EC L FDE++ + SR LV SKLY+A
Sbjct: 1131 IDIVLNPLGVPSRMNVGQILECLLGLAGKYLQESYTTNLFDEQFGAEASRSLVYSKLYEA 1190
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHV 95
++ NP + DG+ G PF + +
Sbjct: 1191 SIKSGNPWLFEPHHPGKIQLFDGRTGIPFDQPI 1223
>gi|392283450|gb|AFM54206.1| RpoB (chloroplast) [Ceratozamia hildae]
Length = 1075
Score = 61.6 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 41/67 (61%), Gaps = 13/67 (19%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC--------SLRH-----FDERYKQKGSRKLVLSKLYKA 72
+D++ NPL V RMN+G IFEC RH FDERY+++ SRKLV +LY
Sbjct: 850 VDMVLNPLGVLSRMNVGQIFECLPGLAGNLMNRHYRITPFDERYEREASRKLVFPELYGT 909
Query: 73 CKQTANP 79
++TANP
Sbjct: 910 SERTANP 916
>gi|254798673|ref|YP_003058290.1| beta subunit of RNA polymerase [Parachlorella kessleri]
gi|229915621|gb|ACQ90964.1| beta subunit of RNA polymerase [Parachlorella kessleri]
Length = 1312
Score = 61.2 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 46/93 (49%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
IDI+ NPL VP RMN+G I E L FDE++ + SR LV SKLY+A
Sbjct: 1086 IDIVLNPLGVPSRMNVGQILESLLGFAGKYLHESYKIELFDEKFGAEASRSLVYSKLYEA 1145
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHV 95
+TANP K DG+ G F + V
Sbjct: 1146 SLKTANPWLFEPQHPGKIKLFDGRTGESFDQPV 1178
>gi|108796838|ref|YP_636411.1| RNA polymerase beta subunit [Staurastrum punctulatum]
gi|88909641|sp|Q32RW5.1|RPOB_STAPU RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|61393606|gb|AAX45747.1| beta subunit of RNA polymerase [Staurastrum punctulatum]
Length = 1068
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 49/93 (52%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
ID++ +PL VP RMN+G +FEC L FDER++++ SRKLV S+LYKA
Sbjct: 846 IDMVLSPLGVPSRMNVGQLFECLLGLAGSYLNNHYRIMPFDERFEREASRKLVFSELYKA 905
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHV 95
K T P DG+ G F++ +
Sbjct: 906 RKFTGYPWLFEPNSPGKSSLFDGRTGEIFEQSI 938
>gi|427718348|ref|YP_007066342.1| DNA-directed RNA polymerase subunit beta [Calothrix sp. PCC 7507]
gi|427350784|gb|AFY33508.1| DNA-directed RNA polymerase subunit beta [Calothrix sp. PCC 7507]
Length = 1099
Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 36/95 (37%), Positives = 48/95 (50%), Gaps = 23/95 (24%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLY 70
S +DI+ NPL VP RMN+G +FEC L FDE Y ++ SR++V KL
Sbjct: 846 SPVDIVLNPLGVPSRMNVGQVFECLLGWAGHNLGVRFKITPFDEMYGEESSRRIVHGKLQ 905
Query: 71 KACKQTA--------NPCK--TLDGQMGNPFKEHV 95
+A +T+ NP K DG+ G PF V
Sbjct: 906 EARDETSKTWVYDPDNPGKITVFDGRTGEPFDRPV 940
>gi|186685076|ref|YP_001868272.1| DNA-directed RNA polymerase subunit beta [Nostoc punctiforme PCC
73102]
gi|186467528|gb|ACC83329.1| DNA-directed RNA polymerase, beta subunit RpoB [Nostoc punctiforme
PCC 73102]
Length = 1099
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 23/95 (24%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLY 70
S +DI+ NPL VP RMN+G +FEC L FDE Y ++ SR++V KL
Sbjct: 846 SPVDIVLNPLGVPSRMNVGQVFECLLGWAGQTLGVRFKITPFDEMYGEESSRRIVHGKLQ 905
Query: 71 KACKQTA--------NPCKTL--DGQMGNPFKEHV 95
+A +T NP K + DG+ G PF +
Sbjct: 906 EARDETGKDWVYNPDNPGKIMVYDGRTGEPFDRAI 940
>gi|363399128|gb|AEW12945.1| RNA polymerase beta subunit [Colacium vesiculosum]
Length = 1050
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 23/95 (24%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSL----RHFDERY---------KQKGSRKLVLSKLY 70
++++II NPL +P RMN+G ++EC L H E+Y K + SRK+V SKLY
Sbjct: 833 TSLEIILNPLGIPSRMNVGQLYECFLGMAGHHLKEKYLITQFGESEKNQVSRKIVFSKLY 892
Query: 71 KACKQTA--------NPCKT--LDGQMGNPFKEHV 95
+A K+T +P K+ DG+ G FK+ V
Sbjct: 893 EASKKTKKEWLFLPNHPGKSTIFDGRDGTAFKQPV 927
>gi|119511559|ref|ZP_01630667.1| DNA-directed RNA polymerase beta subunit [Nodularia spumigena
CCY9414]
gi|119463794|gb|EAW44723.1| DNA-directed RNA polymerase beta subunit [Nodularia spumigena
CCY9414]
Length = 1099
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 46/91 (50%), Gaps = 23/91 (25%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLY 70
S +DI+ NPL VP RMN+G +FEC L FDE Y ++ SR +V KL
Sbjct: 846 STVDIVLNPLGVPSRMNVGQVFECMLGWAAHTLGVRFKITPFDEMYGEETSRSIVHGKLQ 905
Query: 71 KACKQTA--------NPCKTL--DGQMGNPF 91
+A +T NP K + DG+ G PF
Sbjct: 906 EARDETGKDWVYNPDNPGKIMVFDGRTGEPF 936
>gi|108773319|ref|YP_635874.1| beta subunit of RNA polymerase [Oltmannsiellopsis viridis]
gi|109904551|sp|Q20EX1.1|RPOB_OLTVI RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|82541901|gb|ABB81942.1| beta subunit of RNA polymerase [Oltmannsiellopsis viridis]
Length = 1416
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 49/93 (52%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G I+EC L R FDE Y + SR LV SKLY+A
Sbjct: 1193 LDMVLNPLGVPSRMNVGQIYECLLGLAGRYLGQKFKVRPFDEIYGPQTSRSLVYSKLYEA 1252
Query: 73 CKQT--------ANPCKT--LDGQMGNPFKEHV 95
+T A+P KT DG+ G F + V
Sbjct: 1253 RLRTGQRWLFNPASPGKTRLFDGRTGECFSQPV 1285
>gi|392283452|gb|AFM54207.1| RpoB (chloroplast) [Zamia furfuracea]
Length = 1078
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 40/67 (59%), Gaps = 13/67 (19%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC--------SLRH-----FDERYKQKGSRKLVLSKLYKA 72
+D++ NPL V RMN G IFEC RH FDERY+++ SRKLV +LY
Sbjct: 856 VDMVLNPLGVLSRMNAGQIFECLPGLAGNLMNRHYRITPFDERYEREASRKLVFPELYGT 915
Query: 73 CKQTANP 79
++TANP
Sbjct: 916 SERTANP 922
>gi|304322999|ref|YP_003795537.1| beta subunit of RNA polymerase [Floydiella terrestris]
gi|270048198|gb|ACZ58493.1| beta subunit of RNA polymerase [Floydiella terrestris]
Length = 1057
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 45/95 (47%), Gaps = 23/95 (24%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSLRH-------------FDERYKQKGSRKLVLSKLY 70
S +D++ NPL VP RMN+G I+EC L FDE Y SR V KLY
Sbjct: 455 SPLDLVLNPLGVPSRMNVGQIYECLLGFAGKFLGEQYRITPFDESYGPDASRSFVFEKLY 514
Query: 71 KACKQTA--------NPCKT--LDGQMGNPFKEHV 95
KA QT NP K DG+ G+ F + +
Sbjct: 515 KASSQTGLSWIFKPENPGKIRLYDGRTGDRFDQAI 549
>gi|428205513|ref|YP_007089866.1| DNA-directed RNA polymerase subunit beta [Chroococcidiopsis
thermalis PCC 7203]
gi|428007434|gb|AFY85997.1| DNA-directed RNA polymerase subunit beta [Chroococcidiopsis
thermalis PCC 7203]
Length = 1100
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 23/89 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L FDE + ++ SR +V KL +A
Sbjct: 848 VDIVLNPLGVPSRMNVGQVFECLLGWAGANLGLRFKLTPFDEMFGEEASRSIVHGKLTQA 907
Query: 73 CKQTA--------NPCK--TLDGQMGNPF 91
+ TA NP K DG+ G PF
Sbjct: 908 REDTAQDWMYDPENPGKIQVFDGRTGEPF 936
>gi|269101092|ref|YP_003289240.1| Plastid-encoded DNA-directed RNA polymerase subunit beta
[Ectocarpus siliculosus]
gi|266631600|emb|CAV31271.1| Plastid-encoded DNA-directed RNA polymerase subunit beta
[Ectocarpus siliculosus]
gi|270118730|emb|CAT18810.1| Plastid-encoded DNA-directed RNA polymerase subunit beta
[Ectocarpus siliculosus]
Length = 1139
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 46/94 (48%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRH-------------FDERYKQKGSRKLVLSKLYKA 72
+D+I NPL VP RMN+G IFEC L FDE YK SR L+ L KA
Sbjct: 906 VDVILNPLGVPSRMNVGQIFECLLGFAGDYLNRRFKVIPFDEMYKPNASRILINKALKKA 965
Query: 73 CKQTA--------NPCKTL--DGQMGNPFKEHVL 96
K+T +P K L DG+ G+ F VL
Sbjct: 966 AKETDKCWLFNKFSPGKVLLTDGRTGDVFDNSVL 999
>gi|108773403|ref|YP_635922.1| PEP RNA polymerase beta subunit [Helicosporidium sp. ex Simulium
jonesii]
gi|122197339|sp|Q2EEX2.1|RPOB_HELSJ RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|87242978|gb|ABD33970.1| RNA polymerase beta chain [Helicosporidium sp. ex Simulium jonesi]
Length = 1247
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
IDII NPL +P RMN+G IFE ++ FDE++ + SR VLSKLYKA
Sbjct: 1022 IDIILNPLGIPSRMNVGQIFESLLGLAGFYLNETYTINIFDEQFGLEASRSFVLSKLYKA 1081
Query: 73 C----------KQTANPCKTLDGQMGNPFKEHV 95
K+ A +DG G F++ +
Sbjct: 1082 SILSNKPWLFLKKNAGKTNIIDGLTGKYFQQPI 1114
>gi|434407074|ref|YP_007149959.1| DNA-directed RNA polymerase subunit beta [Cylindrospermum stagnale
PCC 7417]
gi|428261329|gb|AFZ27279.1| DNA-directed RNA polymerase subunit beta [Cylindrospermum stagnale
PCC 7417]
Length = 1096
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 23/91 (25%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLY 70
S +DI+ NPL VP RMN+G +FEC L FDE Y ++ SR++V KL
Sbjct: 886 SPVDIVLNPLGVPSRMNVGQVFECLLGWAGHNLGVRFKITPFDEMYGEESSRRIVHGKLQ 945
Query: 71 KACKQTA--------NPCKTL--DGQMGNPF 91
+A +T+ +P K + DG+ G PF
Sbjct: 946 EARDETSKLWVYNPDDPGKIMVFDGRTGEPF 976
>gi|11467788|ref|NP_050839.1| RNA polymerase beta subunit [Nephroselmis olivacea]
gi|17433259|sp|Q9TL06.1|RPOB_NEPOL RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|5880717|gb|AAD54810.1|AF137379_33 beta subunit of RNA polymerase (chloroplast) [Nephroselmis
olivacea]
Length = 1109
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G +FEC L R FDE Y + SR LV +KL++A
Sbjct: 884 VDMVLNPLGVPSRMNVGQVFECLLGLAGQRLGQQLKVRAFDEMYGAEASRHLVYNKLHEA 943
Query: 73 CKQTA--------NPCKT--LDGQMGNPFKEHV 95
+ T +P K+ +DG+ G+ F + V
Sbjct: 944 SEVTGHHWLFDPNHPGKSRLIDGRTGDMFDQAV 976
>gi|75910405|ref|YP_324701.1| DNA-directed RNA polymerase subunit beta [Anabaena variabilis ATCC
29413]
gi|115305557|sp|Q3M5D0.1|RPOB_ANAVT RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|75704130|gb|ABA23806.1| DNA-directed RNA polymerase subunit beta [Anabaena variabilis ATCC
29413]
Length = 1117
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 23/95 (24%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLY 70
S +DI+ NPL VP RMN+G +FEC L FDE Y ++ SR++V KL
Sbjct: 864 SPVDIVLNPLGVPSRMNVGQVFECLLGWAGHTLGVRFKITPFDEMYGEESSRRIVHGKLQ 923
Query: 71 KACKQTA--------NPCKTL--DGQMGNPFKEHV 95
+A +T +P K + DG+ G PF V
Sbjct: 924 EARDETGKDWVYNPDDPGKIMVFDGRTGEPFDRPV 958
>gi|298490329|ref|YP_003720506.1| DNA-directed RNA polymerase subunit beta ['Nostoc azollae' 0708]
gi|298232247|gb|ADI63383.1| DNA-directed RNA polymerase, beta subunit ['Nostoc azollae' 0708]
Length = 1122
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 23/95 (24%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLY 70
S +DI+ NPL VP RMN+G +FEC L FDE Y ++ SR++V KL
Sbjct: 869 SPVDIVLNPLGVPSRMNVGQVFECLLGWAGHNLGVRFKITPFDEMYGEESSRRIVHGKLQ 928
Query: 71 KACKQTA--------NPCKTL--DGQMGNPFKEHV 95
+A +T +P K + DG+ G PF V
Sbjct: 929 EARDETGKNWVYNPHDPGKIMVYDGRTGEPFDRPV 963
>gi|242624339|ref|YP_003002257.1| DNA-directed RNA polymerase beta chain [Aureoumbra lagunensis]
gi|239997447|gb|ACS36969.1| DNA-directed RNA polymerase beta chain [Aureoumbra lagunensis]
Length = 1091
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 38/94 (40%), Positives = 44/94 (46%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
IDI+ NPL VP RMN+G IFEC L R FDE Y + SRKLV L KA
Sbjct: 849 IDILLNPLGVPSRMNVGQIFECLLGLAGSKLNRRFKVRPFDEMYGSETSRKLVNHYLQKA 908
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
++T P DG+ G F VL
Sbjct: 909 AQKTQEPWLYNSWVPGRITLRDGRTGTLFDNPVL 942
>gi|218246583|ref|YP_002371954.1| DNA-directed RNA polymerase subunit beta [Cyanothece sp. PCC 8801]
gi|257059625|ref|YP_003137513.1| DNA-directed RNA polymerase subunit beta [Cyanothece sp. PCC 8802]
gi|218167061|gb|ACK65798.1| DNA-directed RNA polymerase, beta subunit [Cyanothece sp. PCC 8801]
gi|256589791|gb|ACV00678.1| DNA-directed RNA polymerase, beta subunit [Cyanothece sp. PCC 8802]
Length = 1103
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 44/93 (47%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L FDE Y ++ SRK V KL +A
Sbjct: 852 VDIVLNPLGVPSRMNVGQVFECLLGWAGENLGVRFKVTPFDEMYGEETSRKTVHGKLQEA 911
Query: 73 CK--------QTANPCK--TLDGQMGNPFKEHV 95
Q NP K DG+ G PF V
Sbjct: 912 SHKRGKSWIYQEENPGKIQVFDGRTGEPFDRPV 944
>gi|427730013|ref|YP_007076250.1| DNA-directed RNA polymerase subunit beta [Nostoc sp. PCC 7524]
gi|427365932|gb|AFY48653.1| DNA-directed RNA polymerase, beta subunit [Nostoc sp. PCC 7524]
Length = 1099
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 45/93 (48%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L FDE Y ++ SRK+V KL +A
Sbjct: 848 VDIVLNPLGVPSRMNVGQVFECLLGWAGYNLGVRFKITPFDEMYGEESSRKIVHGKLQEA 907
Query: 73 CKQTA-----NP-----CKTLDGQMGNPFKEHV 95
+T NP DG+ G PF V
Sbjct: 908 RDETGRNWVYNPDDSGKIMVFDGRTGEPFDRPV 940
>gi|440682151|ref|YP_007156946.1| DNA-directed RNA polymerase subunit beta [Anabaena cylindrica PCC
7122]
gi|428679270|gb|AFZ58036.1| DNA-directed RNA polymerase subunit beta [Anabaena cylindrica PCC
7122]
Length = 1118
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 23/91 (25%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLY 70
S +DI+ NPL VP RMN+G +FEC L FDE Y ++ SR++V KL
Sbjct: 866 SPVDIVLNPLGVPSRMNVGQVFECLLGWAGQNLGVRFKITPFDEMYGEESSRRIVHGKLQ 925
Query: 71 KACKQTA--------NPCKTL--DGQMGNPF 91
+A +T +P K + DG+ G PF
Sbjct: 926 EARDETGKNWVYNPDDPGKIMVYDGRTGEPF 956
>gi|208751317|gb|ACI31271.1| beta subunit of RNA polymerase [Volvox carteri]
gi|261888211|gb|ACY06066.1| beta subunit of RNA polymerase [Volvox carteri f. nagariensis]
Length = 652
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 38/67 (56%), Gaps = 13/67 (19%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLY 70
+++DI+ NPL VP RMN+G I+EC L H FDE Y SR VLSKLY
Sbjct: 405 TSVDIVLNPLGVPSRMNVGQIYECLLGLAGRYLGEHYKIPPFDEMYGADASRSFVLSKLY 464
Query: 71 KACKQTA 77
A K+T
Sbjct: 465 DARKKTG 471
>gi|427709397|ref|YP_007051774.1| DNA-directed RNA polymerase subunit beta [Nostoc sp. PCC 7107]
gi|427361902|gb|AFY44624.1| DNA-directed RNA polymerase subunit beta [Nostoc sp. PCC 7107]
Length = 1099
Score = 58.5 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 23/95 (24%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSLR-------------HFDERYKQKGSRKLVLSKLY 70
S +DI+ NPL VP RMN+G +FEC L FDE Y ++ SR++V KL
Sbjct: 846 SPVDIVLNPLGVPSRMNVGQVFECLLGWAGHTLGVRFKIVPFDEMYGEESSRRIVHGKLQ 905
Query: 71 KACKQTA--------NPCKTL--DGQMGNPFKEHV 95
+A +T +P K + DG+ G PF V
Sbjct: 906 EARDETGRDWVYNPDDPGKIMVFDGRTGEPFDRPV 940
>gi|353441288|gb|AEQ94246.1| RNA polymerase beta subunit (chloroplast) [Eutreptia viridis]
Length = 952
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 48/94 (51%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
IDII NPL VP RMN+G +FEC L F+E Y ++ S+K+ KLY+A
Sbjct: 742 IDIILNPLGVPSRMNVGQLFECLLGLAGYFLKENYRITPFNETYGEEISKKITFQKLYEA 801
Query: 73 CKQT--------ANPCKT--LDGQMGNPFKEHVL 96
K T NP K+ DG+ G F + ++
Sbjct: 802 SKHTNQNWILEKNNPGKSRIFDGRTGKTFDQSIV 835
>gi|302857290|ref|XP_002959835.1| hypothetical protein VOLCADRAFT_71834 [Volvox carteri f.
nagariensis]
gi|300254184|gb|EFJ39100.1| hypothetical protein VOLCADRAFT_71834 [Volvox carteri f.
nagariensis]
Length = 293
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 39/67 (58%), Gaps = 13/67 (19%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSL----RH---------FDERYKQKGSRKLVLSKLY 70
+++DI+ NPL VP RMN+G I+EC L R+ FDE Y SR VLSKLY
Sbjct: 46 TSVDIVLNPLGVPSRMNVGQIYECLLGLAGRYLGEHYKIPPFDEMYGADASRSFVLSKLY 105
Query: 71 KACKQTA 77
A K+T
Sbjct: 106 DARKKTG 112
>gi|385269101|ref|YP_006234230.1| DNA-directed RNA polymerase subunit beta [Eutreptiella gymnastica]
gi|384070857|emb|CCE26518.1| DNA-directed RNA polymerase subunit beta [Eutreptiella gymnastica]
Length = 1084
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RH---------FDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G + EC L +H FDE Y + SRK+V KLY+A
Sbjct: 860 VDMVLNPLGVPSRMNVGQVLECLLGLAGQHLNESYRITPFDEMYGDETSRKIVYKKLYEA 919
Query: 73 CKQTAN--------PCKT--LDGQMGNPFKEHV 95
+T P KT +DG+ G FK+ V
Sbjct: 920 KLKTGKSWLFDPNFPGKTKVIDGRTGETFKQPV 952
>gi|454296373|dbj|BAM85939.1| RNA polymerase beta subunit II (chloroplast) [Gonium pectorale]
Length = 826
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 49/103 (47%), Gaps = 25/103 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL----RH---------FDERYKQKGSR 62
PF + +DI+ NPL VP RMN+G I+EC L R+ FDE Y SR
Sbjct: 527 PFLPDGTY--VDIVLNPLGVPSRMNVGQIYECLLGLAGRYLGEHYKIPPFDEMYGSDASR 584
Query: 63 KLVLSKLYKACKQTA--------NPCKT--LDGQMGNPFKEHV 95
VLSKLY A K+T NP K DG+ F + V
Sbjct: 585 SFVLSKLYAARKKTGLKWLFDPNNPGKIRLFDGRNSECFNQTV 627
>gi|81300331|ref|YP_400539.1| DNA-directed RNA polymerase subunit beta [Synechococcus elongatus
PCC 7942]
gi|109914404|sp|Q31N17.1|RPOB_SYNE7 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|81169212|gb|ABB57552.1| DNA-directed RNA polymerase, beta subunit [Synechococcus elongatus
PCC 7942]
Length = 1100
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 44/93 (47%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L FDE Y + SR V +KL +A
Sbjct: 850 LDIVLNPLGVPSRMNVGQVFECMLGWAGQLLDARFKVTPFDEMYGAEASRLTVNAKLSEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHV 95
+QT P + DG+ G PF V
Sbjct: 910 REQTGQPWVFSDDEPGKIQVYDGRTGEPFDRPV 942
>gi|56752516|ref|YP_173217.1| DNA-directed RNA polymerase subunit beta [Synechococcus elongatus
PCC 6301]
gi|81561186|sp|Q5MZ23.1|RPOB_SYNP6 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|56687475|dbj|BAD80697.1| RNA polymerase beta subunit [Synechococcus elongatus PCC 6301]
Length = 1100
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 44/93 (47%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L FDE Y + SR V +KL +A
Sbjct: 850 LDIVLNPLGVPSRMNVGQVFECMLGWAGQLLDARFKVTPFDEMYGAEASRLTVNAKLSEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHV 95
+QT P + DG+ G PF V
Sbjct: 910 REQTGQPWVFSDDEPGKIQVYDGRTGEPFDRPV 942
>gi|125987641|sp|Q1ACN6.2|RPOB_CHAVU RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
Length = 1074
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
ID++ +PL VP RMN+G IFEC L +H FDER++++ SRKL S+LY+A
Sbjct: 852 IDMVLSPLGVPSRMNLGQIFECLLGLAGESLKKHYRIMPFDERHEREASRKLAFSELYQA 911
Query: 73 CKQTA--------NPCKT--LDGQMGNPFKEHV 95
K T P K+ DG+ G F+ +
Sbjct: 912 KKFTGHSWLFEPDTPGKSQLFDGRTGQTFENAI 944
>gi|41179041|ref|NP_958397.1| RNA polymerase beta subunit II [Chlamydomonas reinhardtii]
gi|41017748|sp|Q8HTL7.1|RPOB2_CHLRE RecName: Full=DNA-directed RNA polymerase subunit beta C-terminal
section; AltName: Full=PEP; AltName:
Full=Plastid-encoded RNA polymerase subunit beta
C-terminal section; Short=RNA polymerase subunit beta
C-terminal section
gi|24209934|gb|AAN41267.1| RNA polymerase beta'' subunit [Chlamydomonas reinhardtii]
gi|28269764|tpg|DAA00942.1| TPA_inf: RNA polymerase beta subunit II [Chlamydomonas reinhardtii]
gi|213517422|gb|ACJ50128.1| RNA polymerase beta subunit II [Chlamydomonas reinhardtii]
Length = 626
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 37/65 (56%), Gaps = 13/65 (20%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G I+EC L H FDE Y SR VLSKLY+A
Sbjct: 360 VDIVLNPLGVPSRMNVGQIYECLLGLAGRYLGEHYKIPPFDEMYGADASRSFVLSKLYEA 419
Query: 73 CKQTA 77
K+T
Sbjct: 420 RKKTG 424
>gi|225593148|gb|ACN96066.1| DNA-directed RNA polymerase, beta subunit/140 kD subunit
[Fischerella sp. MV11]
Length = 1138
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 47/95 (49%), Gaps = 23/95 (24%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLY 70
S +DI+ NPL VP RMN+G +FEC L FDE Y ++ SR +V KL
Sbjct: 885 SPVDIVLNPLGVPSRMNVGQVFECLLGWAGHVMGVRFKITPFDEMYGEEASRSIVHGKLQ 944
Query: 71 KACKQTA--------NPCKTL--DGQMGNPFKEHV 95
+A +T +P K + DG+ G PF V
Sbjct: 945 EARDETGKNWVFNPDDPGKIMVYDGRTGEPFDRPV 979
>gi|224178086|ref|YP_002600950.1| beta subunit of RNA polymerase [Pyramimonas parkeae]
gi|215882753|gb|ACJ71126.1| beta subunit of RNA polymerase [Pyramimonas parkeae]
Length = 1064
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLR-------------HFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G +FEC L FDE Y ++ SR LV KLY+A
Sbjct: 856 VDMVLNPLGVPSRMNVGQVFECLLGLAGKYLNQSMKVIPFDEMYGKETSRGLVYRKLYEA 915
Query: 73 CKQT----------ANPCKTLDGQMGNPFKEHVL 96
++T A + DG+ G F + VL
Sbjct: 916 RRKTKKKWLFEPAFAGKTRLFDGRTGEVFDQPVL 949
>gi|108773283|ref|YP_635711.1| RNA polymerase beta subunit [Chara vulgaris]
gi|77157939|gb|ABA61980.1| beta subunit of RNA polymerase [Chara vulgaris]
Length = 1091
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
ID++ +PL VP RMN+G IFEC L +H FDER++++ SRKL S+LY+A
Sbjct: 869 IDMVLSPLGVPSRMNLGQIFECLLGLAGESLKKHYRIMPFDERHEREASRKLAFSELYQA 928
Query: 73 CKQTA--------NPCKT--LDGQMGNPFKEHV 95
K T P K+ DG+ G F+ +
Sbjct: 929 KKFTGHSWLFEPDTPGKSQLFDGRTGQTFENAI 961
>gi|354566891|ref|ZP_08986062.1| DNA-directed RNA polymerase subunit beta [Fischerella sp. JSC-11]
gi|353544550|gb|EHC14004.1| DNA-directed RNA polymerase subunit beta [Fischerella sp. JSC-11]
Length = 1107
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 47/95 (49%), Gaps = 23/95 (24%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLY 70
S +DI+ NPL VP RMN+G +FEC L FDE Y ++ SR +V KL
Sbjct: 854 SPVDIVLNPLGVPSRMNVGQVFECLLGWAGHVMGVRFKITPFDEMYGEEASRTIVHGKLQ 913
Query: 71 KACKQTA--------NPCKTL--DGQMGNPFKEHV 95
+A +T +P K + DG+ G PF V
Sbjct: 914 EARDETGKNWVFNPDDPGKIMVYDGRTGEPFDRPV 948
>gi|414079100|ref|YP_007000524.1| DNA-directed RNA polymerase subunit beta [Anabaena sp. 90]
gi|413972379|gb|AFW96467.1| DNA-directed RNA polymerase subunit beta [Anabaena sp. 90]
Length = 1112
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 46/95 (48%), Gaps = 23/95 (24%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLY 70
S +DI+ NPL VP RMN+G +FEC L FDE Y ++ SR+LV KL
Sbjct: 859 SPVDIVLNPLGVPSRMNVGQVFECLLGWAGHNLGVRFKITPFDEMYGEETSRRLVHGKLQ 918
Query: 71 KACKQTA-----NP-----CKTLDGQMGNPFKEHV 95
+A +T NP DG+ G PF +
Sbjct: 919 EARDETTKDWIYNPDNAGKIMVYDGRTGEPFDRAI 953
>gi|427734310|ref|YP_007053854.1| DNA-directed RNA polymerase subunit beta [Rivularia sp. PCC 7116]
gi|427369351|gb|AFY53307.1| DNA-directed RNA polymerase subunit beta [Rivularia sp. PCC 7116]
Length = 1101
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 46/95 (48%), Gaps = 23/95 (24%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLY 70
S +DI+ NPL VP RMN+G +FEC L FDE Y ++ SR++V KL
Sbjct: 848 SCVDIVLNPLGVPSRMNVGQVFECLLGWAGHTLGVRFKITPFDEMYGEESSRQIVHGKLQ 907
Query: 71 KACKQTA--------NPCK--TLDGQMGNPFKEHV 95
+ +T NP K DG+ G PF V
Sbjct: 908 EGRDETGKDWVYNPDNPGKIQVYDGRTGEPFDRAV 942
>gi|215400714|ref|YP_002327475.1| RNA polymerase beta subunit [Vaucheria litorea]
gi|194441164|gb|ACF70892.1| RNA polymerase beta subunit [Vaucheria litorea]
Length = 1092
Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 38/94 (40%), Positives = 47/94 (50%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRH-------------FDERYKQKGSRKLVLSKLYKA 72
IDIIFNPL VP RMN+G IFEC L FDE Y + SR L+ +KL +A
Sbjct: 860 IDIIFNPLGVPSRMNVGQIFECLLGFAGDNLNKRFKILPFDEMYSSEASRILINNKLKEA 919
Query: 73 CKQTA--------NPCKTL--DGQMGNPFKEHVL 96
+T +P K L DG+ G F +L
Sbjct: 920 ALKTKKSWLFNEYSPGKVLLKDGRTGENFDNPIL 953
>gi|409052476|ref|YP_006666434.1| RNA polymerase beta chain (chloroplast) [Trebouxiophyceae sp.
MX-AZ01]
gi|402746094|gb|AFQ93789.1| RNA polymerase beta chain (chloroplast) [Trebouxiophyceae sp.
MX-AZ01]
Length = 1353
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D+I NPL +P RMN+G +FEC + FDE Y + SR LV KLY+A
Sbjct: 1129 VDMILNPLGIPSRMNVGQVFECLLGLAGLQLGQRFKVTPFDEIYGPEASRSLVYLKLYQA 1188
Query: 73 CKQTAN--------PCKT--LDGQMGNPFKEHV 95
+T P K+ DG+ G PF++ V
Sbjct: 1189 RLRTNQGWLFNPLFPGKSALFDGRTGRPFQQWV 1221
>gi|115350032|ref|YP_764412.1| beta subunit of RNA polymerase [Stigeoclonium helveticum]
gi|122165136|sp|Q06SF4.1|RPOB2_STIHE RecName: Full=DNA-directed RNA polymerase subunit beta C-terminal
section; AltName: Full=PEP; AltName:
Full=Plastid-encoded RNA polymerase subunit beta
C-terminal section; Short=RNA polymerase subunit beta
C-terminal section
gi|98990246|gb|ABF60213.1| beta subunit of RNA polymerase [Stigeoclonium helveticum]
Length = 1080
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 46/93 (49%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RH---------FDERYKQKGSRKLVLSKLYKA 72
ID+ NPL VP RMN+G I+EC L +H FDE + + SR V SKLY A
Sbjct: 467 IDMALNPLGVPSRMNVGQIYECLLGLAGKHLGEQYRIQPFDEAFGPEASRSFVFSKLYSA 526
Query: 73 CKQTA--------NP--CKTLDGQMGNPFKEHV 95
+T NP K DG+ GN F + +
Sbjct: 527 KTKTGQSWLFQPTNPGKLKLFDGRTGNCFDQAI 559
>gi|108796876|ref|YP_636174.1| beta subunit of RNA polymerase [Pseudendoclonium akinetum]
gi|88909629|sp|Q3ZJ93.1|RPOB_PSEAK RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|56159574|gb|AAV80598.1| beta subunit of RNA polymerase [Pseudendoclonium akinetum]
Length = 2178
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G I EC ++ FDE Y + SR LV SKLY+A
Sbjct: 1955 LDIVLNPLGVPSRMNVGQILECLLGMAGYYLKQNFKIQPFDEIYGCEASRSLVYSKLYEA 2014
Query: 73 CKQTAN--------PCKT--LDGQMGNPFKEHV 95
+T P KT DG+ G+ FK+ V
Sbjct: 2015 RIKTGQDWLFNANHPGKTRLFDGRTGDCFKQPV 2047
>gi|229915453|gb|ACQ90798.1| beta subunit of RNA polymerase [Oocystis solitaria]
Length = 1115
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G I EC + FDE+Y + SR LV SKLY+A
Sbjct: 895 VDMVLNPLGVPSRMNVGQILECLLGLAGIFLNQQYKITPFDEKYGPEASRSLVFSKLYEA 954
Query: 73 CKQTA-----NP-----CKTLDGQMGNPFKEHV 95
+T NP + DG+ G F +H
Sbjct: 955 RLKTGQKWLFNPNFPGKIQLFDGRNGKCFDQHT 987
>gi|428299638|ref|YP_007137944.1| DNA-directed RNA polymerase subunit beta [Calothrix sp. PCC 6303]
gi|428236182|gb|AFZ01972.1| DNA-directed RNA polymerase subunit beta [Calothrix sp. PCC 6303]
Length = 1110
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 47/95 (49%), Gaps = 23/95 (24%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSLR-------------HFDERYKQKGSRKLVLSKLY 70
S +DI+ NPL VP RMN+G +FEC L FDE Y ++ SR++V KL
Sbjct: 857 SPVDIVLNPLGVPSRMNVGQVFECLLGWAGHNMGVRFKVVPFDEMYGEESSRRVVHGKLQ 916
Query: 71 KACKQTAN--------PCKTL--DGQMGNPFKEHV 95
+A +T P K + DG+ G PF V
Sbjct: 917 EARDETGKKWLYNPDEPGKIIVYDGRTGEPFDRPV 951
>gi|108773039|ref|YP_635949.1| beta subunit of RNA polymerase fragment b [Acutodesmus obliquus]
gi|122179537|sp|Q1KVX5.1|RPOB2_SCEOB RecName: Full=DNA-directed RNA polymerase subunit beta C-terminal
section; AltName: Full=PEP; AltName:
Full=Plastid-encoded RNA polymerase subunit beta
C-terminal section; Short=RNA polymerase subunit beta
C-terminal section
gi|88696605|gb|ABD48231.1| beta subunit of RNA polymerase fragment b [Acutodesmus obliquus]
Length = 565
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G I+EC L + FDE Y SR +KLY+A
Sbjct: 341 LDMVLNPLGVPSRMNVGQIYECLLGLASKYLNHYYRIQAFDEIYGPHASRSFTFAKLYEA 400
Query: 73 CKQTA-----NPC-----KTLDGQMGNPFKEHV 95
+T NPC + DGQ G P+ V
Sbjct: 401 RLKTNQKWLFNPCYPGKMQIFDGQTGEPYDSPV 433
>gi|407915026|gb|EKG08905.1| DNA-directed RNA polymerase subunit 2 domain 6, partial
[Macrophomina phaseolina MS6]
Length = 143
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 44/76 (57%), Gaps = 23/76 (30%)
Query: 44 IFECSL--------RH-----FDERYKQKGSRKLVLSKLYKACKQTANP----------C 80
IFECSL RH FDERY+Q+ SRKLV S+LY+A KQT NP
Sbjct: 1 IFECSLGLAGNLLKRHYRIAPFDERYEQEASRKLVFSELYEASKQTRNPWVFEPEYPGKS 60
Query: 81 KTLDGQMGNPFKEHVL 96
+ DG+ G+PF++ VL
Sbjct: 61 RIFDGRTGDPFEQPVL 76
>gi|548822|sp|P36440.1|RPOB_HETCA RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|452825|emb|CAA53450.1| RNA polymerase beta subunit [Heterosigma carterae]
Length = 1116
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/96 (38%), Positives = 47/96 (48%), Gaps = 23/96 (23%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLY 70
+++DII NPL VP RMN+G IFEC L FDE Y+ + SR L+ KL
Sbjct: 830 TSVDIILNPLGVPSRMNVGQIFECLLGLAGDQLNKRFKILPFDEMYQNEASRILINQKLK 889
Query: 71 KACKQ--------TANPCKTL--DGQMGNPFKEHVL 96
A K+ +P K L DG+ G F VL
Sbjct: 890 DAAKKQNKPWLFSAYSPGKILLSDGRTGEKFDNPVL 925
>gi|157777933|gb|ABV70119.1| DNA-directed RNA polymerase beta subunit [Heterosigma akashiwo]
Length = 1117
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/96 (38%), Positives = 47/96 (48%), Gaps = 23/96 (23%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLY 70
+++DII NPL VP RMN+G IFEC L FDE Y+ + SR L+ KL
Sbjct: 831 TSVDIILNPLGVPSRMNVGQIFECLLGLAGDQLNKRFKILPFDEMYQNEASRILINQKLK 890
Query: 71 KACKQ--------TANPCKTL--DGQMGNPFKEHVL 96
A K+ +P K L DG+ G F VL
Sbjct: 891 DAAKKQNKPWLFSAYSPGKILLSDGRTGEKFDNPVL 926
>gi|189095359|ref|YP_001936372.1| RNA polymerase beta subunit [Heterosigma akashiwo]
gi|157694702|gb|ABV65978.1| DNA-directed RNA polymerase beta subunit [Heterosigma akashiwo]
Length = 1121
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/96 (38%), Positives = 47/96 (48%), Gaps = 23/96 (23%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLY 70
+++DII NPL VP RMN+G IFEC L FDE Y+ + SR L+ KL
Sbjct: 831 TSVDIILNPLGVPSRMNVGQIFECLLGLAGDQLNKRFKILPFDEMYQNEASRILINQKLK 890
Query: 71 KACKQ--------TANPCKTL--DGQMGNPFKEHVL 96
A K+ +P K L DG+ G F VL
Sbjct: 891 DAAKKQNKPWLFSAYSPGKILLSDGRTGEKFDNPVL 926
>gi|67968293|dbj|BAE00193.1| RNA polymerase beta chain, partial (chloroplast) [Selaginella
uncinata]
Length = 1071
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 16/82 (19%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFE--------CSLRHF-----DERYKQKGSRKLVLSKLY 70
++ID+I +P VPPRMN+G I E RH DERY+++ RK V + Y
Sbjct: 844 TSIDMILSPSGVPPRMNVGQISERVPGPAGYHPERHHRIIPSDERYEREAPRKPVFPETY 903
Query: 71 KACKQTANPCKTLDGQMGNPFK 92
+A +QTANP ++L ++GNP K
Sbjct: 904 EASEQTANP-RSL--ELGNPGK 922
>gi|403066536|ref|YP_006639025.1| DNA-directed RNA polymerase beta chain (chloroplast) [Saccharina
japonica]
gi|378787449|gb|AFC40079.1| DNA-directed RNA polymerase beta chain (chloroplast) [Saccharina
japonica]
Length = 1132
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/94 (38%), Positives = 46/94 (48%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRH-------------FDERYKQKGSRKLVLSKLYKA 72
+D+I NPL VP RMN+G IFEC L FDE Y+ SR L+ L KA
Sbjct: 899 VDVILNPLGVPSRMNVGQIFECLLGFAGDYLNRRFKVIPFDEMYRPNASRILINKTLKKA 958
Query: 73 CKQT--------ANPCKTL--DGQMGNPFKEHVL 96
K+T ++P K L DG+ G F +L
Sbjct: 959 SKKTNKSWLFNKSSPGKILLTDGRTGEIFDNSIL 992
>gi|443313452|ref|ZP_21043063.1| DNA-directed RNA polymerase, beta subunit [Synechocystis sp. PCC
7509]
gi|442776395|gb|ELR86677.1| DNA-directed RNA polymerase, beta subunit [Synechocystis sp. PCC
7509]
Length = 1110
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 46/95 (48%), Gaps = 23/95 (24%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLY 70
S +DI+ NPL VP RMN+G +FEC L FDE Y ++ SR +V KL
Sbjct: 857 SPVDIVLNPLGVPSRMNVGQVFECLLGWAGENLGLRFKITPFDEMYGEESSRTIVHGKLT 916
Query: 71 KACKQTA--------NPCKT--LDGQMGNPFKEHV 95
+A ++T P K DG+ G PF V
Sbjct: 917 EAREETGKDWLFDPEQPGKIQLYDGRTGEPFDRPV 951
>gi|452821484|gb|EME28514.1| [pt] DNA-directed RNA polymerase subunit [Galdieria sulphuraria]
Length = 3132
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 43/93 (46%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
IDII NPL VP RMN+G +FEC ++ FDE Y SRK+V KL +A
Sbjct: 898 IDIILNPLGVPSRMNVGQLFECLLALAGYYLNKRFTVMPFDEMYGVDSSRKVVNKKLKQA 957
Query: 73 C----------KQTANPCKTLDGQMGNPFKEHV 95
K +A DG+ G PF V
Sbjct: 958 MEISDLEWLFNKNSAGKIPLFDGRTGEPFDNPV 990
>gi|255961294|ref|YP_003097476.1| RNA polymerase beta chain [Selaginella moellendorffii]
gi|254941466|gb|ACT88981.1| RNA polymerase beta chain [Selaginella moellendorffii]
Length = 1077
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 13/69 (18%)
Query: 24 SNIDIIFNPLEVPPRMNIGHI---------FECSLRH----FDERYKQKGSRKLVLSKLY 70
++ID+I +PL VPPRMN+G I + H FDERY+++ RK V + Y
Sbjct: 845 TSIDMIPSPLGVPPRMNVGQISERVPGPAGYNLETHHRIIPFDERYEREAPRKSVYPETY 904
Query: 71 KACKQTANP 79
+A +QTANP
Sbjct: 905 EASEQTANP 913
>gi|428320489|ref|YP_007118371.1| DNA-directed RNA polymerase subunit beta [Oscillatoria
nigro-viridis PCC 7112]
gi|428244169|gb|AFZ09955.1| DNA-directed RNA polymerase subunit beta [Oscillatoria
nigro-viridis PCC 7112]
Length = 1128
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 23/89 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC---------SLRH----FDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G IFEC S+R FDE + + SR+ V KL +A
Sbjct: 879 VDIVLNPLGVPSRMNVGQIFECLLGWAGENLSMRFKMVPFDEMHGSEKSRETVHGKLQEA 938
Query: 73 CKQTA--------NPCKTL--DGQMGNPF 91
++T +P KT+ DG+ G PF
Sbjct: 939 REKTGKPWVFNENHPGKTIVYDGRTGEPF 967
>gi|182676588|sp|A5GVF3.2|RPOB_SYNR3 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
Length = 1097
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 24/94 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRH--------------FDERYKQKGSRKLVLSKLYK 71
IDI+ NPL VP RMN+G +FEC+L FDE + + SR+ V L +
Sbjct: 853 IDIVLNPLGVPSRMNVGQVFECALMGWAADNLDSRFKIVPFDEMHGAEKSRETVEGYLKE 912
Query: 72 ACKQTA--------NPCKT--LDGQMGNPFKEHV 95
A KQ NP K +DG+ G PF + V
Sbjct: 913 AAKQPGREWVYDPENPGKIQLIDGRSGEPFDQPV 946
>gi|296399256|gb|ADH10431.1| RNA polymerase beta subunit [Selaginella moellendorffii]
Length = 1077
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 13/69 (18%)
Query: 24 SNIDIIFNPLEVPPRMNIGHI---------FECSLRH----FDERYKQKGSRKLVLSKLY 70
++ID+I +PL VPPRMN+G I + H FDERY+++ RK V + Y
Sbjct: 845 TSIDMIPSPLGVPPRMNVGQISERVPGPAGYNLETHHRIIPFDERYEREAPRKSVYPETY 904
Query: 71 KACKQTANP 79
+A +QTANP
Sbjct: 905 EASEQTANP 913
>gi|302824457|ref|XP_002993871.1| hypothetical protein SELMODRAFT_236845 [Selaginella moellendorffii]
gi|300138238|gb|EFJ05012.1| hypothetical protein SELMODRAFT_236845 (mitochondrion) [Selaginella
moellendorffii]
Length = 1069
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 13/69 (18%)
Query: 24 SNIDIIFNPLEVPPRMNIGHI---------FECSLRH----FDERYKQKGSRKLVLSKLY 70
++ID+I +PL VPPRMN+G I + H FDERY+++ RK V + Y
Sbjct: 837 TSIDMIPSPLGVPPRMNVGQISERVPGPAGYNLETHHRIIPFDERYEREAPRKSVYPETY 896
Query: 71 KACKQTANP 79
+A +QTANP
Sbjct: 897 EASEQTANP 905
>gi|334118487|ref|ZP_08492576.1| DNA-directed RNA polymerase subunit beta [Microcoleus vaginatus
FGP-2]
gi|333459494|gb|EGK88107.1| DNA-directed RNA polymerase subunit beta [Microcoleus vaginatus
FGP-2]
Length = 1129
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 23/89 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC---------SLRH----FDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G IFEC S+R FDE + + SR+ V KL +A
Sbjct: 880 VDIVLNPLGVPSRMNVGQIFECLLGWAGENLSMRFKMVPFDEMHGAEKSRETVHGKLQEA 939
Query: 73 CKQTA--------NPCKTL--DGQMGNPF 91
++T +P KT+ DG+ G PF
Sbjct: 940 REKTGKPWVFNEKHPGKTIVYDGRTGEPF 968
>gi|409992472|ref|ZP_11275659.1| DNA-directed RNA polymerase subunit beta [Arthrospira platensis
str. Paraca]
gi|291568317|dbj|BAI90589.1| RNA polymerase beta subunit [Arthrospira platensis NIES-39]
gi|409936673|gb|EKN78150.1| DNA-directed RNA polymerase subunit beta [Arthrospira platensis
str. Paraca]
Length = 1127
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------SLRH------FDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G IFEC +L+ FDE + Q+ SR+ V SKL +A
Sbjct: 872 MDIVLNPLGVPSRMNVGQIFECLMGWAGENLKRRFKVIPFDEMFGQEMSRETVHSKLKEA 931
Query: 73 CKQTAN--------PCKTL--DGQMGNPFKEHV 95
++ P KT+ DG+ G PF + V
Sbjct: 932 REKLKKDWLFSEEYPGKTIVYDGRTGEPFDQPV 964
>gi|218437736|ref|YP_002376065.1| DNA-directed RNA polymerase subunit beta [Cyanothece sp. PCC 7424]
gi|218170464|gb|ACK69197.1| DNA-directed RNA polymerase, beta subunit [Cyanothece sp. PCC 7424]
Length = 1096
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L FDE Y ++ SR+ V L +A
Sbjct: 844 VDIVLNPLGVPSRMNVGQVFECLLGWAGENLGVRFKITPFDEMYGEEASRETVHGLLEQA 903
Query: 73 CKQ--------TANPCKTL--DGQMGNPFKEHV 95
+ T NP K + DG+ G PF V
Sbjct: 904 SHRPGKDWVFDTENPGKIMVYDGRTGEPFDRPV 936
>gi|90994443|ref|YP_536933.1| RNA polymerase beta subunit [Pyropia yezoensis]
gi|109904721|sp|Q1XDN5.1|RPOB_PORYE RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|90819007|dbj|BAE92376.1| DNA-directed RNA polymerase beta chain [Pyropia yezoensis]
Length = 1143
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 44/93 (47%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRH-------------FDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L FDE Y + SR LV KL +A
Sbjct: 892 VDIVLNPLGVPSRMNVGQVFECLLGLAGGYLGKRFKIIPFDEMYGAEASRALVNRKLKEA 951
Query: 73 CKQTAN--------PCK--TLDGQMGNPFKEHV 95
T+N P K DG+ G PF V
Sbjct: 952 SLITSNKWLFNDQHPGKMQVFDGRTGEPFDNPV 984
>gi|153805632|ref|YP_001382217.1| RNA polymerase beta chain [Leptosira terrestris]
gi|160175226|sp|A6YGE0.1|RPOB2_LEPTE RecName: Full=DNA-directed RNA polymerase subunit beta C-terminal
section; AltName: Full=PEP; AltName:
Full=Plastid-encoded RNA polymerase subunit beta
C-terminal section; Short=RNA polymerase subunit beta
C-terminal section
gi|134270163|gb|ABO69352.1| RNA polymerase beta chain [Leptosira terrestris]
Length = 880
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G +FE L +H FDE Y + SR LV SKLY+A
Sbjct: 661 VDMVLNPLGVPSRMNVGQVFETLLGLAGKYLHQHFKVTPFDEVYGPEASRSLVYSKLYEA 720
Query: 73 CKQT--------ANPCKT--LDGQMGNPFKEHV 95
+T +P KT DGQ G F + V
Sbjct: 721 RLKTDQNWIFDPKSPGKTRIFDGQTGANFDQAV 753
>gi|11465718|ref|NP_053862.1| RNA polymerase beta subunit [Porphyra purpurea]
gi|1710671|sp|P51252.1|RPOB_PORPU RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|1276718|gb|AAC08138.1| DNA-directed RNA polymerase beta chain (chloroplast) [Porphyra
purpurea]
Length = 1143
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 43/93 (46%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLR-------------HFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L FDE Y + SR LV KL +A
Sbjct: 892 VDIVLNPLGVPSRMNVGQVFECLLGLAGGYLDKRFKIIPFDEMYGAEASRALVNRKLQEA 951
Query: 73 CKQTAN--------PCK--TLDGQMGNPFKEHV 95
T N P K DG+ G PF V
Sbjct: 952 SILTKNKWIFNDQHPGKMQVFDGRTGEPFDNPV 984
>gi|378787290|gb|AFC39921.1| RNA polymerase beta subunit [Porphyra umbilicalis]
Length = 1143
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 43/93 (46%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLR-------------HFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L FDE Y + SR LV KL +A
Sbjct: 892 VDIVLNPLGVPSRMNVGQVFECLLGLAGGYLEKRFKIIPFDEMYGAEASRALVNRKLQEA 951
Query: 73 CKQTAN--------PCK--TLDGQMGNPFKEHV 95
T N P K DG+ G PF V
Sbjct: 952 SILTKNKWIFNDQHPGKMQVFDGRTGEPFDNPV 984
>gi|17229086|ref|NP_485634.1| DNA-directed RNA polymerase subunit beta [Nostoc sp. PCC 7120]
gi|20141699|sp|P22703.2|RPOB_ANASP RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|17135414|dbj|BAB77960.1| RNA polymerase beta subunit [Nostoc sp. PCC 7120]
Length = 1131
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 23/95 (24%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLY 70
S +DI+ NPL VP RMN+G +FEC L FDE Y ++ SR++V KL
Sbjct: 878 SPVDIVLNPLGVPSRMNVGQVFECLLGWAGHTLGVRFKITPFDEMYGEESSRRIVHGKLQ 937
Query: 71 KACKQTA--------NPCKTL--DGQMGNPFKEHV 95
+A +T +P K + DG+ G F V
Sbjct: 938 EARDETGKDWVYNPDDPGKIMVYDGRTGEAFDRPV 972
>gi|12545412|ref|NP_074962.1| RNA polymerase beta subunit [Euglena longa]
gi|14286166|sp|P27059.2|RPOB_ASTLO RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|12329876|emb|CAC24573.1| RNA polymerase subunit [Euglena longa]
Length = 1076
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 49/93 (52%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLR----HFDERYK---------QKGSRKLVLSKLYKA 72
IDII NPL +P RMN+G I+EC L + ERYK + S L+ KL ++
Sbjct: 860 IDIILNPLGIPSRMNVGQIYECLLNLSAINLKERYKIQPFDEYQYKNNSEILIYKKLNQS 919
Query: 73 CKQTA--------NPCKTL--DGQMGNPFKEHV 95
K+T NP KT+ +G+ G PFK+ +
Sbjct: 920 RKKTKKEWLFNPNNPGKTILFNGKNGKPFKQTI 952
>gi|427704231|ref|YP_007047453.1| DNA-directed RNA polymerase subunit beta [Cyanobium gracile PCC
6307]
gi|427347399|gb|AFY30112.1| DNA-directed RNA polymerase, beta subunit [Cyanobium gracile PCC
6307]
Length = 1096
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 47/93 (50%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RH---------FDERYKQKGSRKLVLSKLYKA 72
IDI+ NPL VP RMN+G +FEC + H FDE Y + S++ V + L +A
Sbjct: 853 IDIVLNPLGVPSRMNVGQVFECLMGWASSHLDCRVKVVPFDEMYGPEKSKQTVQAYLEEA 912
Query: 73 CK--------QTANPCKT--LDGQMGNPFKEHV 95
K ANP K +DG+ G PF + V
Sbjct: 913 AKLPGKDWVYNPANPGKIQLIDGRSGEPFDQPV 945
>gi|226968546|ref|YP_002808499.1| RNA polymerase beta chain [Micromonas pusilla CCMP1545]
gi|226348841|gb|ACO50744.1| RNA polymerase beta chain [Micromonas pusilla CCMP1545]
Length = 1079
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 48/93 (51%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL---RH----------FDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC L H FDE + + SR V +LYKA
Sbjct: 867 VDMVLNPLGVPSRMNVGQIFECLLGLAAHTLEENFKVLPFDEMHGDEVSRGFVYQQLYKA 926
Query: 73 CKQT--------ANPCKTL--DGQMGNPFKEHV 95
T A+P K++ DG+ G PF + V
Sbjct: 927 RLATKQDWLFRPASPGKSILFDGRTGYPFDQPV 959
>gi|434398000|ref|YP_007132004.1| DNA-directed RNA polymerase subunit beta [Stanieria cyanosphaera
PCC 7437]
gi|428269097|gb|AFZ35038.1| DNA-directed RNA polymerase subunit beta [Stanieria cyanosphaera
PCC 7437]
Length = 1104
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RH---------FDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L H FDE Y ++ SR+ V K+ +A
Sbjct: 853 VDIVLNPLGVPSRMNVGQVFECLLGWAGEHLGMRFKITPFDEMYGKEASRETVHGKIKEA 912
Query: 73 CKQTA--------NPCK--TLDGQMGNPFKEHV 95
+ NP K DG+ G PF V
Sbjct: 913 TYKPGRNWVFDDENPGKIQVFDGRTGEPFDRPV 945
>gi|383930417|ref|YP_005089839.1| rpoBb gene product (chloroplast) [Dunaliella salina]
gi|246880790|gb|ACS95102.1| beta subunit of RNA polymerase fragment 2 [Dunaliella salina]
Length = 924
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
ID++ NPL VP RMN+G I+EC L FDE Y + SR V SKLY+A
Sbjct: 673 IDMVLNPLGVPSRMNVGQIYECLLGLAGKYLGEHYKISSFDEIYGPEASRSFVFSKLYEA 732
Query: 73 -CK---------QTANPCKTLDGQMGNPFKEHV 95
CK Q + DG+ G+ + + V
Sbjct: 733 RCKTGFKWLFNPQYPGKIRLYDGRTGDCYHQPV 765
>gi|172038401|ref|YP_001804902.1| DNA-directed RNA polymerase subunit beta [Cyanothece sp. ATCC
51142]
gi|354554252|ref|ZP_08973557.1| DNA-directed RNA polymerase, beta subunit [Cyanothece sp. ATCC
51472]
gi|171699855|gb|ACB52836.1| RNA polymerase beta subunit [Cyanothece sp. ATCC 51142]
gi|353553931|gb|EHC23322.1| DNA-directed RNA polymerase, beta subunit [Cyanothece sp. ATCC
51472]
Length = 1104
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 44/93 (47%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
IDI+ NPL VP RMN+G +FEC L FDE Y ++ SRK V L KA
Sbjct: 853 IDIVLNPLGVPSRMNVGQVFECLLGWAGENLGVRFKITPFDEMYGEESSRKTVHGLLEKA 912
Query: 73 CKQ--------TANPCK--TLDGQMGNPFKEHV 95
K+ T +P K DG+ G F V
Sbjct: 913 AKKPRKDWVYNTDHPGKIDVYDGRTGEKFDRAV 945
>gi|323149208|ref|YP_004222037.1| RNA polymerase beta chain [Coccomyxa subellipsoidea C-169]
gi|317467264|gb|ADV29885.1| RNA polymerase beta chain [Coccomyxa subellipsoidea C-169]
Length = 1449
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL +P RMN+G +FEC L FDE Y + SR LV KLY+A
Sbjct: 1225 VDMVLNPLGIPSRMNVGQVFECLLGLAGVQLGQQFKITPFDEIYGAEASRSLVYLKLYQA 1284
Query: 73 CKQTAN--------PCKT--LDGQMGNPFKEHV 95
+T P KT LDG+ G F + +
Sbjct: 1285 RLRTNQDWLFNSRFPGKTPLLDGRTGRLFDQWI 1317
>gi|376403684|ref|YP_005090045.1| rpoB gene product (chloroplast) [Fucus vesiculosus]
gi|269991247|emb|CAX12425.1| DNA-directed RNA polymerase beta chain [Fucus vesiculosus]
Length = 1123
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 37/94 (39%), Positives = 45/94 (47%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRH-------------FDERYKQKGSRKLVLSKLYKA 72
ID+I NPL VP RMN+G IFEC L FDE Y+ SR LV L KA
Sbjct: 890 IDVILNPLGVPSRMNVGQIFECLLGFAGDYLNQRFKVLPFDEMYRSNASRILVNKTLKKA 949
Query: 73 CKQT--------ANPCKT--LDGQMGNPFKEHVL 96
+T ++P K +DG+ G F VL
Sbjct: 950 AYKTNKTWLFNKSSPGKIPLIDGRTGELFNNPVL 983
>gi|359459896|ref|ZP_09248459.1| DNA-directed RNA polymerase subunit beta [Acaryochloris sp. CCMEE
5410]
Length = 1099
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G +FEC L FDE + ++ SR V KL +A
Sbjct: 847 VDLVLNPLGVPSRMNVGQVFECLLGWAGQNLNTRFKLTPFDEMHGEEASRSTVHGKLEEA 906
Query: 73 CKQTA-----NPCK-----TLDGQMGNPFKEHV 95
++T +P K DG+ G PF + V
Sbjct: 907 QQKTGKDWLYDPEKPGKLQVFDGRTGEPFDQPV 939
>gi|158336724|ref|YP_001517898.1| DNA-directed RNA polymerase subunit beta [Acaryochloris marina
MBIC11017]
gi|158306965|gb|ABW28582.1| DNA-directed RNA polymerase, beta subunit [Acaryochloris marina
MBIC11017]
Length = 1099
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G +FEC L FDE + ++ SR V KL +A
Sbjct: 847 VDLVLNPLGVPSRMNVGQVFECLLGWAGQNLNTRFKLTPFDEMHGEEASRSTVHGKLEEA 906
Query: 73 CKQTA-----NPCK-----TLDGQMGNPFKEHV 95
++T +P K DG+ G PF + V
Sbjct: 907 QQKTGKDWLYDPEKPGKLQVFDGRTGEPFDQPV 939
>gi|405379339|gb|AEY70834.1| RNA polymerase beta subunit (chloroplast) [Euglena viridis]
Length = 1079
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 24/95 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLR----HFDERYK----------QKGSRKLVLSKLYK 71
+++I NPL +P RMN+G IFEC L +E+YK + S+ +V KLY+
Sbjct: 862 LNMILNPLGIPSRMNVGQIFECLLTLAAVQLNEKYKILPFDETQRNDQTSKNIVYKKLYE 921
Query: 72 ACKQTAN----------PCKTLDGQMGNPFKEHVL 96
A +T K LDG+ G PF++ VL
Sbjct: 922 AKNKTGKTWLFKPNSPGKSKILDGRTGIPFQQPVL 956
>gi|443475925|ref|ZP_21065855.1| DNA-directed RNA polymerase subunit beta [Pseudanabaena biceps PCC
7429]
gi|443019165|gb|ELS33298.1| DNA-directed RNA polymerase subunit beta [Pseudanabaena biceps PCC
7429]
Length = 1100
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 44/93 (47%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLR-------------HFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L FDE Y ++ SR+LV +L A
Sbjct: 848 LDIVLNPLGVPSRMNVGQVFECLLGWAAENLNARFKIVPFDEMYGEEASRELVHGQLEHA 907
Query: 73 CKQTAN--------PCK--TLDGQMGNPFKEHV 95
T P K DG+ G PF + V
Sbjct: 908 RNHTGKDWIFNDGFPGKLTVYDGRTGEPFDQPV 940
>gi|434394231|ref|YP_007129178.1| DNA-directed RNA polymerase subunit beta [Gloeocapsa sp. PCC 7428]
gi|428266072|gb|AFZ32018.1| DNA-directed RNA polymerase subunit beta [Gloeocapsa sp. PCC 7428]
Length = 1099
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 23/89 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L FDE Y ++ SR LV SKL +A
Sbjct: 848 VDIVLNPLGVPSRMNVGQVFECLLGWAGENLGARFKVTPFDEMYGEESSRTLVHSKLSEA 907
Query: 73 CKQTAN----------PCKTLDGQMGNPF 91
++ K DG+ G F
Sbjct: 908 RDRSGKDWLFDPEAPGKIKVFDGRTGEAF 936
>gi|33863774|ref|NP_895334.1| DNA-directed RNA polymerase subunit beta [Prochlorococcus marinus
str. MIT 9313]
gi|41017659|sp|Q7V5P1.1|RPOB_PROMM RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|33635357|emb|CAE21682.1| RNA polymerases beta subunit [Prochlorococcus marinus str. MIT
9313]
Length = 1097
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC + FDE Y + S++ V + L +A
Sbjct: 854 VDIVLNPLGVPSRMNVGQVFECLMGWAAANLDCRVKVVPFDEMYGAEKSQQTVEAYLKEA 913
Query: 73 CKQTA--------NPCK--TLDGQMGNPFKEHV 95
KQ NP K +DG+ G PF + V
Sbjct: 914 AKQPGKEWVYNPDNPGKLQLIDGRSGEPFDQPV 946
>gi|124022146|ref|YP_001016453.1| DNA-directed RNA polymerase subunit beta [Prochlorococcus marinus
str. MIT 9303]
gi|158512749|sp|A2C6S8.1|RPOB_PROM3 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|123962432|gb|ABM77188.1| RNA polymerase beta subunit [Prochlorococcus marinus str. MIT 9303]
Length = 1097
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC + FDE Y + S++ V + L +A
Sbjct: 854 VDIVLNPLGVPSRMNVGQVFECLMGWAAANLDCRVKVVPFDEMYGAEKSQQTVEAYLKEA 913
Query: 73 CKQTA--------NPCK--TLDGQMGNPFKEHV 95
KQ NP K +DG+ G PF + V
Sbjct: 914 AKQPGKEWVYNPENPGKLQLIDGRSGEPFDQPV 946
>gi|428769931|ref|YP_007161721.1| DNA-directed RNA polymerase subunit beta [Cyanobacterium aponinum
PCC 10605]
gi|428684210|gb|AFZ53677.1| DNA-directed RNA polymerase subunit beta [Cyanobacterium aponinum
PCC 10605]
Length = 1091
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 36/95 (37%), Positives = 44/95 (46%), Gaps = 23/95 (24%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSL----RH---------FDERYKQKGSRKLVLSKLY 70
S +DI+ NPL VP RMN+G +FEC L H FDE Y ++ SR V L
Sbjct: 839 SPVDIVLNPLGVPSRMNVGQVFECLLGWAGEHLGYRFKMTPFDEMYGEEASRNTVNGLLK 898
Query: 71 KACKQTA--------NPCKT--LDGQMGNPFKEHV 95
A K+ NP K DG+ G PF V
Sbjct: 899 DASKKPGKDWIFDENNPGKIQLYDGRSGEPFDRPV 933
>gi|156619305|gb|ABU88332.1| RNA polymerase beta subunit [Chlamydomonas moewusii]
Length = 1661
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RH---------FDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G I+EC L +H FDE Y + SR V SKLY A
Sbjct: 756 LDMVLNPLGVPSRMNVGQIYECLLGLAGKHLGENYKVFPFDEIYGAEASRSFVYSKLYNA 815
Query: 73 CKQTA-----NP-----CKTLDGQMGNPFKEHV 95
+T NP DG+ G F + +
Sbjct: 816 SVKTGKTWLFNPNLPGKIGLYDGRTGESFHQAI 848
>gi|428222536|ref|YP_007106706.1| DNA-directed RNA polymerase subunit beta [Synechococcus sp. PCC
7502]
gi|427995876|gb|AFY74571.1| DNA-directed RNA polymerase, beta subunit [Synechococcus sp. PCC
7502]
Length = 1095
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L FDE + ++ SR V +L +A
Sbjct: 847 LDIVLNPLGVPSRMNVGQVFECLLAWAGENRDVRFKITPFDEMHGEEMSRASVHEQLAQA 906
Query: 73 CKQTA--------NPCK--TLDGQMGNPFKEHV 95
++T NP K DG+ G PF + V
Sbjct: 907 QRETGDEWLFNPENPGKLTVYDGRTGEPFDQPV 939
>gi|428778967|ref|YP_007170753.1| DNA-directed RNA polymerase subunit beta [Dactylococcopsis salina
PCC 8305]
gi|428693246|gb|AFZ49396.1| DNA-directed RNA polymerase, beta subunit [Dactylococcopsis salina
PCC 8305]
Length = 1127
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 44/89 (49%), Gaps = 23/89 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D+ NPL VP RMN+G +FEC L FDE Y ++ SR V +KL +A
Sbjct: 862 LDVALNPLGVPSRMNVGQVFECLLGWAAENLNARFKLTPFDEMYGEQASRDTVDAKLKEA 921
Query: 73 CKQTA--------NPCK-TL-DGQMGNPF 91
+ NP K TL DG+ G PF
Sbjct: 922 ASRPGKEWAFDENNPGKMTLYDGRTGEPF 950
>gi|254410869|ref|ZP_05024647.1| DNA-directed RNA polymerase, beta subunit [Coleofasciculus
chthonoplastes PCC 7420]
gi|196182224|gb|EDX77210.1| DNA-directed RNA polymerase, beta subunit [Coleofasciculus
chthonoplastes PCC 7420]
Length = 1116
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 45/93 (48%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC---------SLRH----FDERYKQKGSRKLVLSKLYKA 72
+DII NPL VP RMN+G +FEC LR FDE Y ++ SR V KL +A
Sbjct: 864 LDIILNPLGVPSRMNVGQVFECLLGWAGENLDLRFKMIPFDEMYGEEASRLTVHGKLEQA 923
Query: 73 CKQTA--------NPCK--TLDGQMGNPFKEHV 95
++T NP K DG+ G F V
Sbjct: 924 REETQQDWVFDPENPGKIQVFDGRTGEAFDRPV 956
>gi|443319343|ref|ZP_21048576.1| DNA-directed RNA polymerase, beta subunit [Leptolyngbya sp. PCC
6406]
gi|442781030|gb|ELR91137.1| DNA-directed RNA polymerase, beta subunit [Leptolyngbya sp. PCC
6406]
Length = 1099
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 43/93 (46%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
IDI NPL VP RMN+G +FEC L FDE Y ++ SR KL +A
Sbjct: 847 IDIALNPLGVPSRMNVGQVFECLLGWAADNLDARFKITPFDEMYGEEASRNSTHGKLQEA 906
Query: 73 CKQTA--------NPCKTL--DGQMGNPFKEHV 95
T +P K L DG+ G PF + V
Sbjct: 907 RDYTGQDWVYNPEDPGKILLRDGRTGQPFDKAV 939
>gi|427724283|ref|YP_007071560.1| DNA-directed RNA polymerase subunit beta [Leptolyngbya sp. PCC
7376]
gi|427356003|gb|AFY38726.1| DNA-directed RNA polymerase subunit beta [Leptolyngbya sp. PCC
7376]
Length = 1104
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 46/95 (48%), Gaps = 23/95 (24%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSL----RH---------FDERYKQKGSRKLVLSKLY 70
S IDI+ NPL VP RMN+G +FEC L H FDE + + SR+ V K+
Sbjct: 846 SPIDIVLNPLGVPSRMNVGQVFECLLGWAGEHLNARFKMMPFDEMHGAEASRETVHGKIR 905
Query: 71 KACKQ--------TANPCK--TLDGQMGNPFKEHV 95
+A K+ +P K DG+ G PF V
Sbjct: 906 EASKKPNRDWVFNEDDPGKIQVYDGRTGEPFDRAV 940
>gi|22298184|ref|NP_681431.1| DNA-directed RNA polymerase subunit beta [Thermosynechococcus
elongatus BP-1]
gi|41018025|sp|Q8DL55.1|RPOB_THEEB RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|22294363|dbj|BAC08193.1| RNA polymerase beta subunit [Thermosynechococcus elongatus BP-1]
Length = 1108
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/103 (34%), Positives = 49/103 (47%), Gaps = 25/103 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSR 62
PF R +DI+ NPL VP RMN+G ++EC L FDE + ++ SR
Sbjct: 840 PFLPDGR--PVDIVLNPLGVPSRMNVGQVYECLLGWAGACLGRRFKITPFDEMHGKEKSR 897
Query: 63 KLVLSKLYKACKQTA--------NPCKTL--DGQMGNPFKEHV 95
+ V +KL +A T NP K + DG+ G PF V
Sbjct: 898 ETVHAKLQEARDVTGQDWVFNPENPGKMVVYDGRTGEPFDRPV 940
>gi|119485960|ref|ZP_01620022.1| DNA-directed RNA polymerase beta subunit [Lyngbya sp. PCC 8106]
gi|119456735|gb|EAW37863.1| DNA-directed RNA polymerase beta subunit [Lyngbya sp. PCC 8106]
Length = 1099
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL---------RH----FDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G IFEC L R+ FDE + ++ SR+ V +L A
Sbjct: 847 VDIVLNPLGVPSRMNVGQIFECLLGWAGENLKTRYKVIPFDEMHGEEMSRETVHGELQLA 906
Query: 73 CKQTA--------NPCKTL--DGQMGNPFKEHV 95
++ NP K L DG+ G PF + V
Sbjct: 907 REKNKKDWLFNADNPGKVLLYDGRTGEPFDQPV 939
>gi|428313620|ref|YP_007124597.1| DNA-directed RNA polymerase subunit beta [Microcoleus sp. PCC 7113]
gi|428255232|gb|AFZ21191.1| DNA-directed RNA polymerase subunit beta [Microcoleus sp. PCC 7113]
Length = 1106
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 23/89 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L FDE Y ++ SR V KL +A
Sbjct: 854 LDIVLNPLGVPSRMNVGQVFECLLGWAGENLGLRFKLTPFDEMYGEEASRTTVHGKLKQA 913
Query: 73 CKQ-----TANP-----CKTLDGQMGNPF 91
++ NP K DG+ G F
Sbjct: 914 SEEEDQNWVFNPEHPGKIKVYDGRTGEAF 942
>gi|226968681|ref|YP_002808641.1| RNA polymerase beta chain [Micromonas sp. RCC299]
gi|226431159|gb|ACO55565.1| RNA polymerase beta chain [Micromonas sp. RCC299]
Length = 1076
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL---RH----------FDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC L H FDE + + SR V +LYKA
Sbjct: 864 VDMVLNPLGVPSRMNVGQIFECLLGLAAHTLEQNYKVLPFDEMHGDEVSRGFVYQQLYKA 923
Query: 73 -CK-------QTANPCKTL--DGQMGNPFKEHV 95
C + +P K++ DG+ G PF + V
Sbjct: 924 RCATNQKWVFRPESPGKSILFDGRTGYPFDQPV 956
>gi|424513836|emb|CCO65915.1| DNA-directed RNA polymerase subunit beta [Bathycoccus prasinos]
Length = 1160
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL---RH----------FDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC L H FDE + + SR V LY+A
Sbjct: 950 LDMVLNPLGVPSRMNVGQIFECLLGLAAHTLEKNFKVVPFDEMHGDEISRGFVYQYLYEA 1009
Query: 73 CKQT--------ANPCKTL--DGQMGNPFKEHV 95
T + P KT+ DG+ G+PF++ V
Sbjct: 1010 RLMTQQKWLFRPSAPGKTIVFDGRTGSPFEQPV 1042
>gi|162134305|gb|ABX82600.1| beta subunit of RNA polymerase [Trebouxia aggregata]
Length = 1681
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLR-------------HFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G +FE L FDE Y + SR +V SKLY+A
Sbjct: 1436 VDMVLNPLGVPSRMNVGQVFEALLGLAGVYLNQSFKIPSFDETYGPEASRSIVYSKLYEA 1495
Query: 73 CKQTAN--------PCKT--LDGQMGNPFKEHV 95
++ P KT DG+ G F++ V
Sbjct: 1496 RLKSGQKWLFDPNFPGKTRVFDGRTGQCFEQLV 1528
>gi|254423389|ref|ZP_05037107.1| DNA-directed RNA polymerase, beta subunit [Synechococcus sp. PCC
7335]
gi|196190878|gb|EDX85842.1| DNA-directed RNA polymerase, beta subunit [Synechococcus sp. PCC
7335]
Length = 1150
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 43/93 (46%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
IDI+ NPL VP RMN+G +FE L FDE Y ++ S + KL +A
Sbjct: 868 IDIVLNPLGVPSRMNVGQVFEALLGWAGQNLDARFKVTPFDEMYGEEASLETTHGKLQEA 927
Query: 73 CKQTA--------NPCKT--LDGQMGNPFKEHV 95
QT NP K DG+ G PF + V
Sbjct: 928 RNQTGKDWVFNPDNPGKIQLYDGRTGEPFDQEV 960
>gi|423063290|ref|ZP_17052080.1| DNA-directed RNA polymerase subunit beta [Arthrospira platensis C1]
gi|406715412|gb|EKD10568.1| DNA-directed RNA polymerase subunit beta [Arthrospira platensis C1]
Length = 1143
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 49/93 (52%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------SLRH------FDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G IFEC +L+ FDE + Q+ SR+ V SKL +A
Sbjct: 888 MDIVLNPLGVPSRMNVGQIFECLMGWAGENLKRRFKVIPFDEMFGQEMSRETVHSKLKEA 947
Query: 73 CKQTAN--------PCKTL--DGQMGNPFKEHV 95
++ P KT+ DG+ G F + V
Sbjct: 948 REKLKKDWLFSEEYPGKTIVYDGRTGEAFDQPV 980
>gi|376007521|ref|ZP_09784716.1| DNA-directed RNA polymerase subunit beta [Arthrospira sp. PCC 8005]
gi|375324157|emb|CCE20469.1| DNA-directed RNA polymerase subunit beta [Arthrospira sp. PCC 8005]
Length = 1102
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 49/93 (52%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------SLRH------FDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G IFEC +L+ FDE + Q+ SR+ V SKL +A
Sbjct: 847 MDIVLNPLGVPSRMNVGQIFECLMGWAGENLKRRFKVIPFDEMFGQEMSRETVHSKLKEA 906
Query: 73 CKQTAN--------PCKTL--DGQMGNPFKEHV 95
++ P KT+ DG+ G F + V
Sbjct: 907 REKLKKDWLFSEEYPGKTIVYDGRTGEAFDQPV 939
>gi|209522760|ref|ZP_03271318.1| DNA-directed RNA polymerase, beta subunit [Arthrospira maxima
CS-328]
gi|209496809|gb|EDZ97106.1| DNA-directed RNA polymerase, beta subunit [Arthrospira maxima
CS-328]
Length = 1102
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 49/93 (52%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------SLRH------FDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G IFEC +L+ FDE + Q+ SR+ V SKL +A
Sbjct: 847 MDIVLNPLGVPSRMNVGQIFECLMGWAGENLKRRFKVIPFDEMFGQEMSRETVHSKLKEA 906
Query: 73 CKQTAN--------PCKTL--DGQMGNPFKEHV 95
++ P KT+ DG+ G F + V
Sbjct: 907 REKLKKDWLFSEEYPGKTIVYDGRTGEAFDQPV 939
>gi|209527607|ref|ZP_03276107.1| DNA-directed RNA polymerase, beta subunit [Arthrospira maxima CS-328]
gi|209491956|gb|EDZ92311.1| DNA-directed RNA polymerase, beta subunit [Arthrospira maxima CS-328]
Length = 1621
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 49/93 (52%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------SLRH------FDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G IFEC +L+ FDE + Q+ SR+ V SKL +A
Sbjct: 1366 MDIVLNPLGVPSRMNVGQIFECLMGWAGENLKRRFKVIPFDEMFGQEMSRETVHSKLKEA 1425
Query: 73 CKQTAN--------PCKTL--DGQMGNPFKEHV 95
++ P KT+ DG+ G F + V
Sbjct: 1426 REKLKKDWLFSEEYPGKTIVYDGRTGEAFDQPV 1458
>gi|332708599|ref|ZP_08428573.1| DNA-directed RNA polymerase subunit beta [Moorea producens 3L]
gi|332352696|gb|EGJ32262.1| DNA-directed RNA polymerase subunit beta [Moorea producens 3L]
Length = 1129
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 42/93 (45%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L FDE Y + SR V +KL +A
Sbjct: 876 VDIVLNPLGVPSRMNVGQVFECLLGWAGEHLNVRFKLTPFDEMYGAEASRLTVHNKLKEA 935
Query: 73 CKQT----------ANPCKTLDGQMGNPFKEHV 95
+Q A DG+ G F + V
Sbjct: 936 SEQPDKEWVFNPEHAGKITVYDGRTGEAFDQPV 968
>gi|428772463|ref|YP_007164251.1| DNA-directed RNA polymerase subunit beta [Cyanobacterium stanieri
PCC 7202]
gi|428686742|gb|AFZ46602.1| DNA-directed RNA polymerase subunit beta [Cyanobacterium stanieri
PCC 7202]
Length = 1087
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 43/93 (46%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RH---------FDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L H FDE Y ++ SR V L A
Sbjct: 841 VDIVLNPLGVPSRMNVGQVFECLLGWAGEHLGYRFKMTPFDEMYGEEASRNTVNGLLRDA 900
Query: 73 CKQTA--------NPCK--TLDGQMGNPFKEHV 95
K+ +P K DG+ G PF V
Sbjct: 901 AKKPGKDWVFNENHPGKIQVYDGRTGEPFDNPV 933
>gi|86605128|ref|YP_473891.1| DNA-directed RNA polymerase subunit beta [Synechococcus sp.
JA-3-3Ab]
gi|109914402|sp|Q2JX64.1|RPOB_SYNJA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|86553670|gb|ABC98628.1| DNA-directed RNA polymerase, beta subunit [Synechococcus sp.
JA-3-3Ab]
Length = 1133
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 25/95 (26%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G ++EC L FDE + + SR V +KL +A
Sbjct: 857 VDVVLNPLGVPSRMNVGQVYECLLGWAAEHLGVRFKLMPFDEMHGLEASRLTVEAKLREA 916
Query: 73 CKQTA-----NP-------CKTLDGQMGNPFKEHV 95
++T NP + DG+ G PF + V
Sbjct: 917 REKTGKDWIFNPEGKYCGKIQVFDGRTGEPFDQPV 951
>gi|86609871|ref|YP_478633.1| DNA-directed RNA polymerase subunit beta [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|109914403|sp|Q2JJ19.1|RPOB_SYNJB RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|86558413|gb|ABD03370.1| DNA-directed RNA polymerase, beta subunit [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 1139
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 25/95 (26%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G ++EC L FDE + + SR V +KL +A
Sbjct: 857 VDVVLNPLGVPSRMNVGQVYECLLGWAAEHLGVRFKLMPFDEMHGLEASRLTVEAKLREA 916
Query: 73 CKQTA-----NP-------CKTLDGQMGNPFKEHV 95
++T NP + DG+ G PF + V
Sbjct: 917 REKTGKDWIFNPEGKYCGKIQVFDGRTGEPFDQPV 951
>gi|428776707|ref|YP_007168494.1| DNA-directed RNA polymerase subunit beta [Halothece sp. PCC 7418]
gi|428690986|gb|AFZ44280.1| DNA-directed RNA polymerase subunit beta [Halothece sp. PCC 7418]
Length = 1126
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 23/89 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
ID+ NPL VP RMN+G +FEC L FDE Y ++ SR V +KL +A
Sbjct: 860 IDVALNPLGVPSRMNVGQVFECLLGWAGENLNARFKLTPFDEMYGEQASRDSVDAKLKEA 919
Query: 73 CKQTA--------NPCKT--LDGQMGNPF 91
+ +P K DG+ G PF
Sbjct: 920 ANRPGKDWIFNENHPGKIQLYDGRTGEPF 948
>gi|307155095|ref|YP_003890479.1| DNA-directed RNA polymerase subunit beta [Cyanothece sp. PCC 7822]
gi|306985323|gb|ADN17204.1| DNA-directed RNA polymerase, beta subunit [Cyanothece sp. PCC 7822]
Length = 1095
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L FDE Y ++ SR+ V L +A
Sbjct: 844 VDIVLNPLGVPSRMNVGQVFECLLGWAGENLGVRFKITPFDEMYGEEASRETVHGLLNQA 903
Query: 73 CKQTA--------NPCKTL--DGQMGNPFKEHV 95
+ +P K + DG+ G PF V
Sbjct: 904 SNRPGKEWVFSQDHPGKIMVYDGRTGEPFDRPV 936
>gi|411119778|ref|ZP_11392154.1| DNA-directed RNA polymerase subunit beta [Oscillatoriales
cyanobacterium JSC-12]
gi|410709934|gb|EKQ67445.1| DNA-directed RNA polymerase subunit beta [Oscillatoriales
cyanobacterium JSC-12]
Length = 1097
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLR-------------HFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G ++EC L FDE + ++ SR+ V +KL +A
Sbjct: 845 VDIVLNPLGVPSRMNVGQVYECLLGWAAENLGVRFKVVPFDEMHGEEKSRETVHAKLKEA 904
Query: 73 CKQTA-----NP-----CKTLDGQMGNPFKEHV 95
+ NP + DG+ G PF V
Sbjct: 905 SDERGADWVFNPNDPGKIQVFDGRTGEPFDRPV 937
>gi|427712347|ref|YP_007060971.1| DNA-directed RNA polymerase subunit beta [Synechococcus sp. PCC
6312]
gi|427376476|gb|AFY60428.1| DNA-directed RNA polymerase subunit beta [Synechococcus sp. PCC
6312]
Length = 1104
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 23/89 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G ++EC L FDE + + SR+ V KL +A
Sbjct: 848 VDIVLNPLGVPSRMNVGQVYECLLGWAGQNLGMRFKITPFDEMHGLEKSRETVHEKLRQA 907
Query: 73 CKQTA--------NPCK--TLDGQMGNPF 91
+ T NP K DG+ G PF
Sbjct: 908 REATGHDWVFDPENPGKLQVFDGRTGEPF 936
>gi|336169621|ref|YP_004581350.1| rpoBb gene product (chloroplast) [Schizomeris leibleinii]
gi|334851241|gb|AEH05413.1| beta subunit of RNA polymerase (chloroplast) [Schizomeris
leibleinii]
Length = 1012
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 44/93 (47%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
ID+ NPL VP RMN+G I+EC L FDE Y + SR V SKL +A
Sbjct: 442 IDLALNPLGVPSRMNVGQIYECLLGLAGKYLSEQYRIMPFDELYGPEASRSFVFSKLLEA 501
Query: 73 CKQTA--------NPCKT--LDGQMGNPFKEHV 95
++T NP K DG+ G F + +
Sbjct: 502 KQKTGQSWIFQPNNPGKMKLFDGRTGYCFDQAI 534
>gi|425471287|ref|ZP_18850147.1| DNA-directed RNA polymerase subunit beta [Microcystis aeruginosa
PCC 9701]
gi|389882856|emb|CCI36711.1| DNA-directed RNA polymerase subunit beta [Microcystis aeruginosa
PCC 9701]
Length = 1103
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 40/93 (43%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L FDE Y ++ SR V L A
Sbjct: 850 VDIVLNPLGVPSRMNVGQVFECLLGWAGENLGVRFKITPFDEMYGEEASRLTVHGLLENA 909
Query: 73 CK----------QTANPCKTLDGQMGNPFKEHV 95
K + A DG+ G PF V
Sbjct: 910 SKKPNRDWVFKEEHAGKVTVYDGRTGEPFDRPV 942
>gi|390438736|ref|ZP_10227179.1| DNA-directed RNA polymerase subunit beta [Microcystis sp. T1-4]
gi|389837850|emb|CCI31303.1| DNA-directed RNA polymerase subunit beta [Microcystis sp. T1-4]
Length = 1103
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 40/93 (43%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L FDE Y ++ SR V L A
Sbjct: 850 VDIVLNPLGVPSRMNVGQVFECLLGWAGENLGVRFKITPFDEMYGEEASRLTVHGLLENA 909
Query: 73 CK----------QTANPCKTLDGQMGNPFKEHV 95
K + A DG+ G PF V
Sbjct: 910 SKKPNRDWVFKEEHAGKVTVYDGRTGEPFDRPV 942
>gi|425464860|ref|ZP_18844170.1| DNA-directed RNA polymerase subunit beta [Microcystis aeruginosa
PCC 9809]
gi|389833008|emb|CCI22870.1| DNA-directed RNA polymerase subunit beta [Microcystis aeruginosa
PCC 9809]
Length = 1103
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 40/93 (43%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L FDE Y ++ SR V L A
Sbjct: 850 VDIVLNPLGVPSRMNVGQVFECLLGWAGENLGVRFKITPFDEMYGEEASRLTVHGLLENA 909
Query: 73 CK----------QTANPCKTLDGQMGNPFKEHV 95
K + A DG+ G PF V
Sbjct: 910 SKKPNRDWVFKEEHAGKVTVYDGRTGEPFDRPV 942
>gi|425459198|ref|ZP_18838684.1| DNA-directed RNA polymerase subunit beta [Microcystis aeruginosa
PCC 9808]
gi|389823131|emb|CCI28907.1| DNA-directed RNA polymerase subunit beta [Microcystis aeruginosa
PCC 9808]
Length = 1103
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 40/93 (43%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L FDE Y ++ SR V L A
Sbjct: 850 VDIVLNPLGVPSRMNVGQVFECLLGWAGENLGVRFKITPFDEMYGEEASRLTVHGLLENA 909
Query: 73 CK----------QTANPCKTLDGQMGNPFKEHV 95
K + A DG+ G PF V
Sbjct: 910 SKKPNRDWVFKEEHAGKVTVYDGRTGEPFDRPV 942
>gi|422304376|ref|ZP_16391722.1| DNA-directed RNA polymerase subunit beta [Microcystis aeruginosa
PCC 9806]
gi|389790492|emb|CCI13643.1| DNA-directed RNA polymerase subunit beta [Microcystis aeruginosa
PCC 9806]
Length = 1103
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 40/93 (43%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L FDE Y ++ SR V L A
Sbjct: 850 VDIVLNPLGVPSRMNVGQVFECLLGWAGENLGVRFKITPFDEMYGEEASRLTVHGLLENA 909
Query: 73 CK----------QTANPCKTLDGQMGNPFKEHV 95
K + A DG+ G PF V
Sbjct: 910 SKKPNRDWVFKEEHAGKVTVYDGRTGEPFDRPV 942
>gi|425444155|ref|ZP_18824212.1| DNA-directed RNA polymerase subunit beta [Microcystis aeruginosa
PCC 9443]
gi|389730548|emb|CCI05198.1| DNA-directed RNA polymerase subunit beta [Microcystis aeruginosa
PCC 9443]
Length = 1103
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 40/93 (43%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L FDE Y ++ SR V L A
Sbjct: 850 VDIVLNPLGVPSRMNVGQVFECLLGWAGENLGVRFKITPFDEMYGEEASRLTVHGLLENA 909
Query: 73 CK----------QTANPCKTLDGQMGNPFKEHV 95
K + A DG+ G PF V
Sbjct: 910 SKKPNRDWVFKEEHAGKVTVYDGRTGEPFDRPV 942
>gi|425439975|ref|ZP_18820286.1| DNA-directed RNA polymerase subunit beta [Microcystis aeruginosa
PCC 9717]
gi|425454833|ref|ZP_18834559.1| DNA-directed RNA polymerase subunit beta [Microcystis aeruginosa
PCC 9807]
gi|389719679|emb|CCH96514.1| DNA-directed RNA polymerase subunit beta [Microcystis aeruginosa
PCC 9717]
gi|389804389|emb|CCI16649.1| DNA-directed RNA polymerase subunit beta [Microcystis aeruginosa
PCC 9807]
Length = 1103
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 40/93 (43%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L FDE Y ++ SR V L A
Sbjct: 850 VDIVLNPLGVPSRMNVGQVFECLLGWAGENLGVRFKITPFDEMYGEEASRLTVHGLLENA 909
Query: 73 CK----------QTANPCKTLDGQMGNPFKEHV 95
K + A DG+ G PF V
Sbjct: 910 SKKPNRDWVFKEEHAGKVTVYDGRTGEPFDRPV 942
>gi|425435416|ref|ZP_18815869.1| DNA-directed RNA polymerase subunit beta [Microcystis aeruginosa
PCC 9432]
gi|425449445|ref|ZP_18829284.1| DNA-directed RNA polymerase subunit beta [Microcystis aeruginosa
PCC 7941]
gi|440754068|ref|ZP_20933270.1| DNA-directed RNA polymerase, beta subunit [Microcystis aeruginosa
TAIHU98]
gi|389680050|emb|CCH91230.1| DNA-directed RNA polymerase subunit beta [Microcystis aeruginosa
PCC 9432]
gi|389763863|emb|CCI09688.1| DNA-directed RNA polymerase subunit beta [Microcystis aeruginosa
PCC 7941]
gi|440174274|gb|ELP53643.1| DNA-directed RNA polymerase, beta subunit [Microcystis aeruginosa
TAIHU98]
Length = 1103
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 40/93 (43%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L FDE Y ++ SR V L A
Sbjct: 850 VDIVLNPLGVPSRMNVGQVFECLLGWAGENLGVRFKITPFDEMYGEEASRLTVHGLLENA 909
Query: 73 CK----------QTANPCKTLDGQMGNPFKEHV 95
K + A DG+ G PF V
Sbjct: 910 SKKPNRDWVFKEEHAGKVTVYDGRTGEPFDRPV 942
>gi|166368191|ref|YP_001660464.1| DNA-directed RNA polymerase subunit beta [Microcystis aeruginosa
NIES-843]
gi|166090564|dbj|BAG05272.1| RNA polymerase beta subunit [Microcystis aeruginosa NIES-843]
Length = 1111
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 40/93 (43%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L FDE Y ++ SR V L A
Sbjct: 858 VDIVLNPLGVPSRMNVGQVFECLLGWAGENLGVRFKITPFDEMYGEEASRLTVHGLLENA 917
Query: 73 CK----------QTANPCKTLDGQMGNPFKEHV 95
K + A DG+ G PF V
Sbjct: 918 SKKPNRDWVFKEEHAGKVTVYDGRTGEPFDRPV 950
>gi|443654389|ref|ZP_21131311.1| DNA-directed RNA polymerase, beta subunit [Microcystis aeruginosa
DIANCHI905]
gi|159029167|emb|CAO87527.1| rpoB [Microcystis aeruginosa PCC 7806]
gi|443333781|gb|ELS48321.1| DNA-directed RNA polymerase, beta subunit [Microcystis aeruginosa
DIANCHI905]
Length = 1103
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 40/93 (43%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L FDE Y ++ SR V L A
Sbjct: 850 VDIVLNPLGVPSRMNVGQVFECLLGWAGENLGVRFKITPFDEMYGEEASRLTVHGLLENA 909
Query: 73 CK----------QTANPCKTLDGQMGNPFKEHV 95
K + A DG+ G PF V
Sbjct: 910 SKKPNRDWVFKEEHAGKVTVYDGRTGEPFDRPV 942
>gi|443322108|ref|ZP_21051141.1| DNA-directed RNA polymerase, beta subunit [Gloeocapsa sp. PCC
73106]
gi|442788161|gb|ELR97861.1| DNA-directed RNA polymerase, beta subunit [Gloeocapsa sp. PCC
73106]
Length = 1103
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 23/89 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RH---------FDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L H FDE + ++ SR V S + +
Sbjct: 850 VDIVLNPLGVPSRMNVGQVFECLLGWAGEHLGLRFKITPFDEMHGEEASRNTVNSLMEEG 909
Query: 73 CK----------QTANPCKTLDGQMGNPF 91
+ +T K DG+ G PF
Sbjct: 910 SRKRGKHWIYNPETPGKIKVYDGRTGEPF 938
>gi|51209978|ref|YP_063642.1| RNA polymerase beta subunit [Gracilaria tenuistipitata var. liui]
gi|68053109|sp|Q6B8R8.1|RPOB_GRATL RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|50657732|gb|AAT79717.1| RNA polymerase beta subunit [Gracilaria tenuistipitata var. liui]
Length = 1120
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 13/60 (21%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLR-------------HFDERYKQKGSRKLVLSKLYKA 72
+DII NPL VP RMN+G +FEC L FDE Y + SR LV +KL +A
Sbjct: 887 VDIILNPLGVPSRMNVGQLFECLLGLAGEYSSKRFKIIPFDEMYGSEASRALVYNKLKQA 946
>gi|434386954|ref|YP_007097565.1| DNA-directed RNA polymerase, beta subunit [Chamaesiphon minutus PCC
6605]
gi|428017944|gb|AFY94038.1| DNA-directed RNA polymerase, beta subunit [Chamaesiphon minutus PCC
6605]
Length = 1100
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 38/93 (40%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L FDE Y + SR V KL A
Sbjct: 849 VDIVLNPLGVPSRMNVGQVFECLLGWAGHNLNMRFKVTPFDEMYAPEASRTTVHGKLKAA 908
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHV 95
K P DG+ G F V
Sbjct: 909 AKAQDKPWIFDKNEPGKTTVYDGRTGEAFDRPV 941
>gi|283794883|ref|YP_003359236.1| RNA polymerase beta subunit [Cryptomonas paramecium]
gi|253981855|gb|ACT46772.1| RNA polymerase beta subunit [Cryptomonas paramecium]
Length = 1071
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 44/90 (48%), Gaps = 23/90 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RH---------FDERYKQKGSRKLVLSKLYKA 72
IDI+ NPL VP RMN+G IFEC L H FDE ++ SR L+ + L A
Sbjct: 845 IDIVLNPLGVPSRMNVGQIFECLLGLAAEHLGKRFRILPFDEMQGREASRVLINNSLLDA 904
Query: 73 CKQTAN--------PCKTL--DGQMGNPFK 92
+T P K + DG+ G PFK
Sbjct: 905 KLKTGKNWLFSLDHPGKMILYDGRTGEPFK 934
>gi|428306224|ref|YP_007143049.1| DNA-directed RNA polymerase subunit beta [Crinalium epipsammum PCC
9333]
gi|428247759|gb|AFZ13539.1| DNA-directed RNA polymerase subunit beta [Crinalium epipsammum PCC
9333]
Length = 1098
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 41/89 (46%), Gaps = 23/89 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L FDE Y ++ SR V L +
Sbjct: 846 VDIVLNPLGVPSRMNVGQVFECLLGWAGENLGLRFKLTPFDEMYGEESSRSTVHGLLQDS 905
Query: 73 CKQTA--------NPCKT--LDGQMGNPF 91
K+T N KT DG+ G F
Sbjct: 906 VKKTGKDWLFDPENAGKTAVYDGRTGEAF 934
>gi|123966898|ref|YP_001011979.1| DNA-directed RNA polymerase subunit beta [Prochlorococcus marinus
str. MIT 9515]
gi|158512735|sp|A2BYL1.1|RPOB_PROM5 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|123201264|gb|ABM72872.1| RNA polymerase beta subunit [Prochlorococcus marinus str. MIT 9515]
Length = 1097
Score = 51.2 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFE-----------CSLR--HFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FE C ++ FDE Y + S + V + L +A
Sbjct: 854 VDIVLNPLGVPSRMNVGQVFELLMGWAASNLNCRVKVVPFDEMYGAEKSHQTVQAFLKEA 913
Query: 73 CKQTA--------NPCKTL--DGQMGNPFKEHV 95
KQ +P K L DG+ G PF + V
Sbjct: 914 SKQNGKDWVYNPEDPGKLLLKDGRTGEPFDQPV 946
>gi|428216166|ref|YP_007089310.1| DNA-directed RNA polymerase subunit beta [Oscillatoria acuminata
PCC 6304]
gi|428004547|gb|AFY85390.1| DNA-directed RNA polymerase subunit beta [Oscillatoria acuminata
PCC 6304]
Length = 1101
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 23/89 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLR-------------HFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L FDE + + SR+ V KL +A
Sbjct: 848 LDIVLNPLGVPSRMNVGQVFECLLGWAGQNLGSRFKVVPFDEMHGPEKSRESVHGKLQEA 907
Query: 73 CKQTA--------NPCKTL--DGQMGNPF 91
++T +P KTL DG+ G F
Sbjct: 908 RQKTGKDWIFNEDHPGKTLVYDGRTGEAF 936
>gi|148240398|ref|YP_001225785.1| DNA-directed RNA polymerase subunit beta [Synechococcus sp. WH
7803]
gi|158513320|sp|A5GNH3.1|RPOB_SYNPW RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|147848937|emb|CAK24488.1| DNA-directed RNA polymerase beta chain [Synechococcus sp. WH 7803]
Length = 1097
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFE-----------CSLR--HFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FE C ++ FDE Y + S++ V + L +A
Sbjct: 854 VDIVLNPLGVPSRMNVGQVFELLMGWAAANLDCRVKVVPFDEMYGAEKSQQTVETFLKEA 913
Query: 73 CKQTA-----NP-----CKTLDGQMGNPFKEHV 95
KQ NP + +DG+ G PF + V
Sbjct: 914 AKQPGKEWIYNPDDPGKLQLIDGRSGEPFDQPV 946
>gi|88807332|ref|ZP_01122844.1| DNA-directed RNA polymerase beta subunit [Synechococcus sp. WH
7805]
gi|88788546|gb|EAR19701.1| DNA-directed RNA polymerase beta subunit [Synechococcus sp. WH
7805]
Length = 1097
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFE-----------CSLR--HFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FE C ++ FDE Y + S++ V + L +A
Sbjct: 854 VDIVLNPLGVPSRMNVGQVFELLMGWAAANLDCRVKVVPFDEMYGAEKSQQTVETFLKEA 913
Query: 73 CKQTA-----NP-----CKTLDGQMGNPFKEHV 95
KQ NP + +DG+ G PF + V
Sbjct: 914 AKQPGKEWIYNPDDPGKLQLIDGRSGEPFDQPV 946
>gi|87301294|ref|ZP_01084135.1| DNA-directed RNA polymerase beta subunit [Synechococcus sp. WH
5701]
gi|87284262|gb|EAQ76215.1| DNA-directed RNA polymerase beta subunit [Synechococcus sp. WH
5701]
Length = 1096
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 23/95 (24%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFEC----SLRH---------FDERYKQKGSRKLVLSKLY 70
S IDI+ NPL VP RMN+G +FEC + H FDE + + S+ V L
Sbjct: 851 SPIDIVLNPLGVPSRMNVGQVFECLMGWAASHLNCRVKVVPFDEMHGNETSKNTVQKYLE 910
Query: 71 KACKQTA--------NPCKT--LDGQMGNPFKEHV 95
+A + NP K +DG+ G PF + V
Sbjct: 911 EAASEPGKEWVYDPENPGKIQLVDGRTGEPFDQPV 945
>gi|72382854|ref|YP_292209.1| DNA-directed RNA polymerase subunit beta [Prochlorococcus marinus
str. NATL2A]
gi|88909627|sp|Q46J22.1|RPOB_PROMT RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|72002704|gb|AAZ58506.1| DNA-directed RNA polymerase subunit beta [Prochlorococcus marinus
str. NATL2A]
Length = 1095
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFE-----------CSLR--HFDERYKQKGSRKLVLSKLYKA 72
+DI NPL VP RMN+G +FE C ++ FDE Y + S + V + L KA
Sbjct: 854 VDICLNPLGVPSRMNVGQVFELLMGWAASNLDCRVKIVPFDEMYGPEMSNQTVQAYLKKA 913
Query: 73 CKQTA--------NPCKTL--DGQMGNPFKEHV 95
KQ +P K L DG+ G PF + V
Sbjct: 914 AKQPGKSWVYNPKDPGKLLLKDGRTGEPFDQPV 946
>gi|37521852|ref|NP_925229.1| DNA-directed RNA polymerase subunit beta [Gloeobacter violaceus PCC
7421]
gi|41017641|sp|Q7NIA0.1|RPOB_GLOVI RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|35212851|dbj|BAC90224.1| RNA polymerase beta subunit [Gloeobacter violaceus PCC 7421]
Length = 1112
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 43/95 (45%), Gaps = 25/95 (26%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FE L FDE Y ++ SR LV KL +A
Sbjct: 857 VDIVLNPLGVPSRMNVGQVFETLLGWAGACLNVRFKVTPFDEMYIKEASRYLVHEKLMEA 916
Query: 73 CKQTANP------------CKTLDGQMGNPFKEHV 95
+ T +P + DG+ G F V
Sbjct: 917 REVTGDPWVYSDTGKHIGKIQVYDGRTGEAFDRPV 951
>gi|33862041|ref|NP_893602.1| DNA-directed RNA polymerase subunit beta [Prochlorococcus marinus
subsp. pastoris str. CCMP1986]
gi|41017655|sp|Q7V006.1|RPOB_PROMP RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|33634259|emb|CAE19944.1| RNA polymerase beta subunit [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 1097
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFE-----------CSLR--HFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FE C ++ FDE Y + S + V + L +A
Sbjct: 854 VDIVLNPLGVPSRMNVGQVFELLMGWAASNLNCRVKVVPFDEMYGAEKSHQTVQAFLEEA 913
Query: 73 CKQTA--------NPCKTL--DGQMGNPFKEHV 95
KQ +P K L DG+ G PF + V
Sbjct: 914 SKQDGKDWVYNPKDPGKLLLKDGRTGEPFDQPV 946
>gi|78779962|ref|YP_398074.1| DNA-directed RNA polymerase subunit beta [Prochlorococcus marinus
str. MIT 9312]
gi|109904738|sp|Q318Q7.1|RPOB_PROM9 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|78713461|gb|ABB50638.1| DNA-directed RNA polymerase subunit beta [Prochlorococcus marinus
str. MIT 9312]
Length = 1097
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFE-----------CSLR--HFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FE C ++ FDE Y + S + V + L +A
Sbjct: 854 VDIVLNPLGVPSRMNVGQVFELLMGWAASNLNCRVKVVPFDEMYGAEKSHQTVQAFLEEA 913
Query: 73 CKQTA--------NPCKTL--DGQMGNPFKEHV 95
KQ +P K L DG+ G PF + V
Sbjct: 914 SKQPGKAWIYNPEDPGKLLLKDGRTGEPFDQPV 946
>gi|428216728|ref|YP_007101193.1| DNA-directed RNA polymerase subunit beta [Pseudanabaena sp. PCC
7367]
gi|427988510|gb|AFY68765.1| DNA-directed RNA polymerase subunit beta [Pseudanabaena sp. PCC
7367]
Length = 1099
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL---------RH----FDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L R+ FDER+ ++ SR V +L +A
Sbjct: 847 VDIVLNPLGVPSRMNVGQVFECLLGWAGQNKDVRYKITPFDERHGEEMSRNSVHQQLKEA 906
Query: 73 CKQTA--------NPCK--TLDGQMGNPFKEHV 95
+ NP K DG+ G F + V
Sbjct: 907 QRAIGEEWIFNPDNPGKLTVYDGRTGEKFDQPV 939
>gi|254526732|ref|ZP_05138784.1| DNA-directed RNA polymerase, beta subunit [Prochlorococcus marinus
str. MIT 9202]
gi|221538156|gb|EEE40609.1| DNA-directed RNA polymerase, beta subunit [Prochlorococcus marinus
str. MIT 9202]
Length = 1097
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFE-----------CSLR--HFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FE C ++ FDE Y + S + V + L +A
Sbjct: 854 VDIVLNPLGVPSRMNVGQVFELLMGWAASNLNCRVKVVPFDEMYGAEKSHQTVQAFLEEA 913
Query: 73 CKQTA--------NPCKTL--DGQMGNPFKEHV 95
KQ +P K L DG+ G PF + V
Sbjct: 914 SKQPGKAWVYNPDDPGKLLLKDGRTGEPFDQPV 946
>gi|157414087|ref|YP_001484953.1| DNA-directed RNA polymerase subunit beta [Prochlorococcus marinus
str. MIT 9215]
gi|166991526|sp|A8G6Y6.1|RPOB_PROM2 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|157388662|gb|ABV51367.1| RNA polymerase beta subunit [Prochlorococcus marinus str. MIT 9215]
Length = 1097
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFE-----------CSLR--HFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FE C ++ FDE Y + S + V + L +A
Sbjct: 854 VDIVLNPLGVPSRMNVGQVFELLMGWAASNLNCRVKVVPFDEMYGAEKSHQTVQAFLEEA 913
Query: 73 CKQTA--------NPCKTL--DGQMGNPFKEHV 95
KQ +P K L DG+ G PF + V
Sbjct: 914 SKQPGKAWVYNPDDPGKLLLKDGRTGEPFDQPV 946
>gi|123969221|ref|YP_001010079.1| DNA-directed RNA polymerase subunit beta [Prochlorococcus marinus
str. AS9601]
gi|158512723|sp|A2BT61.1|RPOB_PROMS RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|123199331|gb|ABM70972.1| RNA polymerase beta subunit [Prochlorococcus marinus str. AS9601]
Length = 1097
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFE-----------CSLR--HFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FE C ++ FDE Y + S + V + L +A
Sbjct: 854 VDIVLNPLGVPSRMNVGQVFELLMGWAAANLNCRVKVVPFDEMYGAEKSHQTVQAFLEEA 913
Query: 73 CKQTA--------NPCKTL--DGQMGNPFKEHV 95
KQ +P K L DG+ G PF + V
Sbjct: 914 SKQPGKAWVYNPEDPGKLLLKDGRTGEPFDQPV 946
>gi|126697014|ref|YP_001091900.1| DNA-directed RNA polymerase subunit beta [Prochlorococcus marinus
str. MIT 9301]
gi|158513423|sp|A3PEX4.1|RPOB_PROM0 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|126544057|gb|ABO18299.1| RNA polymerase beta subunit [Prochlorococcus marinus str. MIT 9301]
Length = 1097
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFE-----------CSLR--HFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FE C ++ FDE Y + S + V + L +A
Sbjct: 854 VDIVLNPLGVPSRMNVGQVFELLMGWAAANLNCRVKVVPFDEMYGAEKSHQTVQAFLEEA 913
Query: 73 CKQTA--------NPCKTL--DGQMGNPFKEHV 95
KQ +P K L DG+ G PF + V
Sbjct: 914 SKQPGKAWVYNPDDPGKLLLKDGRTGEPFDQPV 946
>gi|403225226|gb|AFR24838.1| DNA-directed RNA polymerase beta chain [uncultured Pelagomonas]
Length = 1081
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 44/94 (46%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC L FDE Y + SR LV L KA
Sbjct: 840 VDLLLNPLGVPSRMNVGQIFECLLGLAGSKLNRRFKITPFDEMYGTETSRNLVNGYLQKA 899
Query: 73 CKQTAN--------PCKTL--DGQMGNPFKEHVL 96
++T P + + DG+ G F VL
Sbjct: 900 AEKTNEAWLYNSSLPGRIVLRDGRTGKLFDNPVL 933
>gi|284929148|ref|YP_003421670.1| DNA-directed RNA polymerase subunit beta [cyanobacterium UCYN-A]
gi|284809607|gb|ADB95312.1| DNA-directed RNA polymerase subunit beta [cyanobacterium UCYN-A]
Length = 1103
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 23/89 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L FDE Y ++ SRK V L KA
Sbjct: 852 MDIVLNPLGVPSRMNVGQVFECLLGWAGENLGVRFKITPFDEMYGEESSRKTVHGLLAKA 911
Query: 73 CK--------QTANPCK--TLDGQMGNPF 91
+ + +P K DG+ G F
Sbjct: 912 AEKPRKNWVYENNHPGKIAVYDGRTGEKF 940
>gi|220905930|ref|YP_002481241.1| DNA-directed RNA polymerase subunit beta [Cyanothece sp. PCC 7425]
gi|219862541|gb|ACL42880.1| DNA-directed RNA polymerase, beta subunit [Cyanothece sp. PCC 7425]
Length = 1099
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G +FEC L FDE + + SR V KL +A
Sbjct: 847 VDVVLNPLGVPSRMNVGQVFECLLGWAGYHLGARFKITPFDEMHGAEASRLTVHGKLDEA 906
Query: 73 CKQTA--------NPCKT--LDGQMGNPFKEHV 95
+ T NP KT DG+ G F V
Sbjct: 907 KELTGRDWVFDPDNPGKTQIFDGRTGEAFDRPV 939
>gi|428204116|ref|YP_007082705.1| DNA-directed RNA polymerase subunit beta [Pleurocapsa sp. PCC 7327]
gi|427981548|gb|AFY79148.1| DNA-directed RNA polymerase, beta subunit [Pleurocapsa sp. PCC
7327]
Length = 1094
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 41/93 (44%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L FDE Y ++ SR V L A
Sbjct: 844 VDIVLNPLGVPSRMNVGQVFECLLGWAGENLGMRFKVTPFDEMYGEEASRHTVHGLLQDA 903
Query: 73 CKQ--------TANPCK--TLDGQMGNPFKEHV 95
+ +P K DG+ G PF V
Sbjct: 904 AAKPGKNWIYNAEHPGKIQVYDGRTGEPFDRPV 936
>gi|376403627|ref|YP_005089856.1| rpoB gene product (chloroplast) [Pedinomonas minor]
gi|229915534|gb|ACQ90878.1| beta subunit of RNA polymerase [Pedinomonas minor]
Length = 1157
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLR-------------HFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G ++EC L FDE + SR L SKLY++
Sbjct: 935 LDIVLNPLGVPSRMNVGQVYECLLSLAGRYLGENYRVVPFDELFGPHISRSLTYSKLYES 994
Query: 73 CKQTA-----NP-----CKTLDGQMGNPFKEHV 95
+ NP K DG+ G F + V
Sbjct: 995 SLKNKQHWLFNPNCPGKTKIFDGRTGECFDQPV 1027
>gi|11467373|ref|NP_043230.1| RNA polymerase beta subunit [Cyanophora paradoxa]
gi|1350843|sp|P48119.1|RPOB_CYAPA RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|1016174|gb|AAA81261.1| beta subunit of RNA polymerase [Cyanophora paradoxa]
Length = 1103
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 25/95 (26%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
IDII NPL VP RMN+G ++EC L FDER+ ++ SR + KL K
Sbjct: 852 IDIILNPLGVPSRMNVGQVYECLLGWAAEHLGVRFKLIPFDERFGKQASRTFIHEKL-KE 910
Query: 73 CKQTAN---------PCKT--LDGQMGNPFKEHVL 96
K+ N P K DG+ G F ++
Sbjct: 911 AKELTNKNWLFNSNHPGKIQLFDGRTGESFDNPIM 945
>gi|352095938|ref|ZP_08956885.1| DNA-directed RNA polymerase subunit beta [Synechococcus sp. WH
8016]
gi|351677294|gb|EHA60443.1| DNA-directed RNA polymerase subunit beta [Synechococcus sp. WH
8016]
Length = 1097
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFE-----------CSLR--HFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FE C ++ FDE Y + S++ V + L +A
Sbjct: 854 VDIVLNPLGVPSRMNVGQVFELLMGWAAHNLDCRVKIVPFDEMYGAEKSQQTVQAYLKEA 913
Query: 73 CKQTA--------NPCKTL--DGQMGNPFKEHV 95
Q +P K L DG+ G PF + V
Sbjct: 914 ASQPGKDWIYNPEDPGKLLLRDGRTGEPFDQPV 946
>gi|377581210|gb|AFB70743.1| DNA-directed RNA polymerase subunit beta, partial (chloroplast)
[Anredera baselloides]
Length = 394
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/44 (54%), Positives = 28/44 (63%), Gaps = 13/44 (29%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERY 56
+D++FNPL VP RMN+G IFECSL RH FDERY
Sbjct: 187 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERY 230
>gi|435856118|ref|YP_007317081.1| DNA-directed RNA polymerase subunit beta (chloroplast)
[Nannochloropsis gaditana]
gi|429126042|gb|AFZ64213.1| DNA-directed RNA polymerase subunit beta (chloroplast)
[Nannochloropsis gaditana]
Length = 1055
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 41/90 (45%), Gaps = 24/90 (26%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLR-------------HFDERYKQKGSRKLVLSK---- 68
+DII NPL VP RMN+G +FEC L FDE Y + SR LV K
Sbjct: 828 VDIILNPLGVPSRMNVGQLFECLLGWAGEKLERRFKVFPFDEMYGTEASRTLVYEKLSEI 887
Query: 69 -----LYKACKQTANPCKTL--DGQMGNPF 91
+ + + P K + DG+ G PF
Sbjct: 888 SEELSEEEKILKKSTPGKVVLRDGRTGEPF 917
>gi|71842272|ref|YP_277360.1| RNA polymerase beta subunit [Emiliania huxleyi]
gi|88909137|sp|Q4G3A7.1|RPOB_EMIHU RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|60101515|gb|AAX13859.1| RNA polymerase beta subunit [Emiliania huxleyi]
gi|336286185|gb|AEI29521.1| RNA polymerase beta subunit [Emiliania huxleyi]
Length = 1093
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 21/87 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK---------QKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G IFEC L H + R+K + SR V + L +A
Sbjct: 847 VDILLNPLGVPSRMNVGQIFECLLGLAAEHLNARFKVIPFDEMNGVEASRGFVNNTLMEA 906
Query: 73 CKQ------TANPCKTL--DGQMGNPF 91
++ T +P K + DGQ G F
Sbjct: 907 AEKQPWVFSTQHPGKMMLTDGQTGEMF 933
>gi|16329957|ref|NP_440685.1| DNA-directed RNA polymerase subunit beta [Synechocystis sp. PCC
6803]
gi|383321700|ref|YP_005382553.1| DNA-directed RNA polymerase subunit beta [Synechocystis sp. PCC
6803 substr. GT-I]
gi|383324869|ref|YP_005385722.1| DNA-directed RNA polymerase subunit beta [Synechocystis sp. PCC
6803 substr. PCC-P]
gi|383490753|ref|YP_005408429.1| DNA-directed RNA polymerase subunit beta [Synechocystis sp. PCC
6803 substr. PCC-N]
gi|384436020|ref|YP_005650744.1| DNA-directed RNA polymerase subunit beta [Synechocystis sp. PCC
6803]
gi|451814116|ref|YP_007450568.1| RNA polymerase beta subunit [Synechocystis sp. PCC 6803]
gi|2500610|sp|P77965.1|RPOB_SYNY3 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|1652443|dbj|BAA17365.1| RNA polymerase beta subunit [Synechocystis sp. PCC 6803]
gi|339273052|dbj|BAK49539.1| DNA-directed RNA polymerase subunit beta [Synechocystis sp. PCC
6803]
gi|359271019|dbj|BAL28538.1| DNA-directed RNA polymerase subunit beta [Synechocystis sp. PCC
6803 substr. GT-I]
gi|359274189|dbj|BAL31707.1| DNA-directed RNA polymerase subunit beta [Synechocystis sp. PCC
6803 substr. PCC-N]
gi|359277359|dbj|BAL34876.1| DNA-directed RNA polymerase subunit beta [Synechocystis sp. PCC
6803 substr. PCC-P]
gi|407957849|dbj|BAM51089.1| DNA-directed RNA polymerase subunit beta [Bacillus subtilis
BEST7613]
gi|451780085|gb|AGF51054.1| RNA polymerase beta subunit [Synechocystis sp. PCC 6803]
Length = 1102
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 41/89 (46%), Gaps = 23/89 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
IDI NPL VP RMN+G +FEC L FDE Y ++ SR V L +A
Sbjct: 850 IDIALNPLGVPSRMNVGQVFECLLGWAGENLGVRFKITPFDEMYGEEASRDTVHGLLEEA 909
Query: 73 CKQ--------TANPCK--TLDGQMGNPF 91
++ +P K DG+ G PF
Sbjct: 910 SQRPNKDWVFNENHPGKIQVFDGRTGEPF 938
>gi|67922541|ref|ZP_00516049.1| DNA-directed RNA polymerase, beta subunit [Crocosphaera watsonii WH
8501]
gi|67855625|gb|EAM50876.1| DNA-directed RNA polymerase, beta subunit [Crocosphaera watsonii WH
8501]
Length = 1104
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 42/93 (45%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L FDE Y ++ SRK V L KA
Sbjct: 853 MDIVLNPLGVPSRMNVGQVFECLLGWAGENLGVRFKITPFDEMYGEESSRKTVHGLLEKA 912
Query: 73 CKQ--------TANPCK--TLDGQMGNPFKEHV 95
+ +P K DG+ G F V
Sbjct: 913 SNKPRKDWVYNEEHPGKIDVYDGRTGEKFDRPV 945
>gi|11465577|ref|NP_045031.1| RNA polymerase beta subunit [Cyanidium caldarium]
gi|14195191|sp|Q9TM35.1|RPOB_CYACA RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|6466433|gb|AAF13014.1|AF022186_187 unknown [Cyanidium caldarium]
Length = 1081
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 32/60 (53%), Gaps = 13/60 (21%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+DII NPL VP RMN+G IFEC L FDE Y+ SR L+ KL +A
Sbjct: 848 VDIILNPLGVPSRMNVGQIFECILGISAFNLKKRFRILPFDEMYESDSSRILINQKLKEA 907
>gi|300866789|ref|ZP_07111469.1| DNA-directed RNA polymerase subunit beta [Oscillatoria sp. PCC
6506]
gi|300335198|emb|CBN56629.1| DNA-directed RNA polymerase subunit beta [Oscillatoria sp. PCC
6506]
Length = 1129
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 23/89 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC---------SLRH----FDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G IFEC LR FDE + + SR+ V KL +A
Sbjct: 878 VDIVLNPLGVPSRMNVGQIFECLLGWAGENLGLRFKIVPFDEMHGAEKSRESVHGKLREA 937
Query: 73 CKQTA--------NPCKT--LDGQMGNPF 91
++T +P K+ DG+ G F
Sbjct: 938 REKTGKGWIFDENHPGKSTVFDGRTGEAF 966
>gi|87125367|ref|ZP_01081213.1| RNA polymerases beta subunit [Synechococcus sp. RS9917]
gi|86167136|gb|EAQ68397.1| RNA polymerases beta subunit [Synechococcus sp. RS9917]
Length = 1097
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFE-----------CSLR--HFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FE C ++ FDE Y + S++ V + L +A
Sbjct: 854 VDIVLNPLGVPSRMNVGQVFELLMGWAASNLDCRVKVVPFDEMYGDEKSQQTVEAFLKEA 913
Query: 73 CKQTA--------NPCKTL--DGQMGNPFKEHV 95
Q +P K L DG+ G PF + V
Sbjct: 914 ASQPGKDWIYNPDDPGKLLLRDGRTGEPFDQPV 946
>gi|254430308|ref|ZP_05044011.1| DNA-directed RNA polymerase, beta subunit [Cyanobium sp. PCC 7001]
gi|197624761|gb|EDY37320.1| DNA-directed RNA polymerase, beta subunit [Cyanobium sp. PCC 7001]
Length = 1096
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RH---------FDERYKQKGSRKLVLSKLYKA 72
IDI+ NPL VP RMN+G +FEC + H FDE + + S++ V + L +A
Sbjct: 853 IDIVLNPLGVPSRMNVGQVFECLMGWASSHLGCRVKVVPFDEMHGAEKSKQTVQAFLEEA 912
Query: 73 CK--------QTANPCKT--LDGQMGNPFKEHV 95
NP K +DG+ G PF + V
Sbjct: 913 ASLPGKDWVYDPENPGKIQLIDGRTGEPFDQPV 945
>gi|170078649|ref|YP_001735287.1| DNA-directed RNA polymerase subunit beta [Synechococcus sp. PCC
7002]
gi|169886318|gb|ACB00032.1| DNA-directed RNA polymerase, beta subunit [Synechococcus sp. PCC
7002]
Length = 1103
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 23/95 (24%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSL----RH---------FDERYKQKGSRKLVLSKLY 70
S +DI+ NPL VP RMN+G +FEC L H FDE + + SR+ V K+
Sbjct: 846 SPVDIVLNPLGVPSRMNVGQVFECLLGWAGEHLNARFKMMPFDEMHGAEASRETVHGKIR 905
Query: 71 KACKQ----------TANPCKTLDGQMGNPFKEHV 95
+A K+ + DG+ G F V
Sbjct: 906 EAAKKPNKDWVFNEDEPGKIQVYDGRTGESFDRAV 940
>gi|110639542|ref|YP_679751.1| DNA-directed RNA polymerase subunit beta [Cytophaga hutchinsonii ATCC
33406]
gi|123058539|sp|Q11QA5.1|RPOB_CYTH3 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|110282223|gb|ABG60409.1| DNA-directed RNA polymerase subunit beta [Cytophaga hutchinsonii ATCC
33406]
Length = 1291
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQK--------GSRKLVLSKLYKACKQTA 77
+DI+ NPL VP RMNIG I+E L ++ +K S + V+++L A T
Sbjct: 1099 VDIVLNPLGVPSRMNIGQIYETLLGLAGKKLGRKYATPIFDGASEEEVINELRDAGLPTI 1158
Query: 78 NPCKTLDGQMGNPFKEHV 95
K +DG GNPF + V
Sbjct: 1159 GRTKLVDGLSGNPFDQPV 1176
>gi|124026591|ref|YP_001015706.1| DNA-directed RNA polymerase subunit beta [Prochlorococcus marinus
str. NATL1A]
gi|158512746|sp|A2C4N2.1|RPOB_PROM1 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|123961659|gb|ABM76442.1| RNA polymerase beta subunit [Prochlorococcus marinus str. NATL1A]
Length = 1095
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFE-----------CSLR--HFDERYKQKGSRKLVLSKLYKA 72
+DI NPL VP RMN+G +FE C ++ FDE Y + S + V + L +A
Sbjct: 854 VDICLNPLGVPSRMNVGQVFELLMGWAASNLDCRVKIVPFDEMYGPEMSNQTVQAYLKEA 913
Query: 73 CKQTA--------NPCKTL--DGQMGNPFKEHV 95
KQ +P K L DG+ G PF + V
Sbjct: 914 AKQPGKSWVYNPKDPGKLLLKDGRTGEPFDQPV 946
>gi|149072056|ref|YP_001293553.1| RNA polymerase beta' chain [Rhodomonas salina]
gi|158513797|sp|A6MVX4.1|RPOB_RHDSA RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|134303007|gb|ABO70811.1| RNA polymerase beta' chain [Rhodomonas salina]
Length = 1097
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK---------QKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC L + D+R+K + SR LV KL +A
Sbjct: 845 VDLVLNPLGVPSRMNVGQIFECLLGLAAENLDKRFKIIPFDEMNGAEASRVLVNEKLMEA 904
Query: 73 CKQTA--------NPCKT--LDGQMGNPFKEHV 95
T +P KT DG+ G F V
Sbjct: 905 RTLTEKDWIFDLRHPGKTQLFDGRTGEAFDNPV 937
>gi|242620025|ref|YP_003002029.1| DNA-directed RNA polymerase beta chain [Aureococcus
anophagefferens]
gi|239997270|gb|ACS36793.1| DNA-directed RNA polymerase beta chain [Aureococcus
anophagefferens]
Length = 1080
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 40/94 (42%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G IFEC L FDE Y + SR LV L A
Sbjct: 838 VDILLNPLGVPSRMNVGQIFECLLGLAGSKLNRRFKVMPFDEMYGVETSRNLVNRYLNMA 897
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
++ P DG+ G F VL
Sbjct: 898 AAKSQEPWVFNSYLPGRVALRDGRTGQLFDNPVL 931
>gi|428226335|ref|YP_007110432.1| DNA-directed RNA polymerase subunit beta [Geitlerinema sp. PCC
7407]
gi|427986236|gb|AFY67380.1| DNA-directed RNA polymerase subunit beta [Geitlerinema sp. PCC
7407]
Length = 1106
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 46/100 (46%), Gaps = 30/100 (30%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK---------QKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FEC L H D R+K + SR+ V KL +A
Sbjct: 847 VDIVLNPLGVPSRMNVGQVFECLLGWAGEHLDVRFKITPFDEMHGPETSRETVHGKLQEA 906
Query: 73 C---KQTA---------NP-----CKTLDGQMGNPFKEHV 95
+QT NP + DG+ G PF V
Sbjct: 907 QDHRQQTDSQYNWDWLYNPQDPGKIQVYDGRTGEPFDRPV 946
>gi|113953748|ref|YP_731555.1| DNA-directed RNA polymerase subunit beta [Synechococcus sp. CC9311]
gi|123327615|sp|Q0I7L7.1|RPOB_SYNS3 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|113881099|gb|ABI46057.1| DNA-directed RNA polymerase, beta subunit [Synechococcus sp.
CC9311]
Length = 1097
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFE-----------CSLR--HFDERYKQKGSRKLVLSKLYKA 72
+DI NPL VP RMN+G +FE C ++ FDE Y + S++ V + L +A
Sbjct: 854 VDICLNPLGVPSRMNVGQVFELLMGWAAANLDCRVKIVPFDEMYGPEKSQQTVQAYLKEA 913
Query: 73 CKQTA--------NPCKTL--DGQMGNPFKEHV 95
Q +P K L DG+ G PF + V
Sbjct: 914 ASQPGKDWIYNPEDPGKLLLRDGRTGEPFDQPV 946
>gi|427418655|ref|ZP_18908838.1| DNA-directed RNA polymerase subunit beta [Leptolyngbya sp. PCC
7375]
gi|425761368|gb|EKV02221.1| DNA-directed RNA polymerase subunit beta [Leptolyngbya sp. PCC
7375]
Length = 1117
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 39/93 (41%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
IDI+ NPL VP RMN+G +FEC L FDE Y + S + KL A
Sbjct: 847 IDIVLNPLGVPSRMNVGQVFECLLGWAGENLNARFKITPFDEMYGSEASMETTHGKLQDA 906
Query: 73 CKQTAN--------PCKT--LDGQMGNPFKEHV 95
T N P K DG+ G F V
Sbjct: 907 RDNTGNGWVFNPEDPGKIQLYDGRTGEAFDRPV 939
>gi|11467690|ref|NP_050742.1| RNA polymerase beta subunit [Guillardia theta]
gi|6094123|sp|O78485.1|RPOB_GUITH RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|3603015|gb|AAC35676.1| RNA polymerase b-chain (chloroplast) [Guillardia theta]
Length = 1096
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 45/93 (48%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC L FDE + + SR LV KL +A
Sbjct: 845 VDLVLNPLGVPSRMNVGQIFECLLGLAAENLNKRFKITPFDEMHGAEASRVLVNEKLNEA 904
Query: 73 CKQTA--------NPCK-TL-DGQMGNPFKEHV 95
+T +P K TL DG+ G F V
Sbjct: 905 KIKTGENWLFDLRHPGKITLYDGRTGEAFDNPV 937
>gi|456062043|ref|YP_007476288.1| RNA polymerase subunit beta (chloroplast) [Pavlova lutheri]
gi|449327230|gb|AGE93786.1| RNA polymerase subunit beta (chloroplast) [Pavlova lutheri]
Length = 1118
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 13/60 (21%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RH---------FDERYKQKGSRKLVLSKLYKA 72
ID++ NPL +P RMN+G IFEC L H FDE + + SR L+ +KL +A
Sbjct: 852 IDVVLNPLGIPSRMNVGQIFECLLGFAAEHLNKFYRVMPFDEMHSTEASRILINNKLKEA 911
>gi|318042319|ref|ZP_07974275.1| DNA-directed RNA polymerase subunit beta [Synechococcus sp. CB0101]
Length = 1096
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 23/95 (24%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFEC----SLRH---------FDERYKQKGSRKLVLSKLY 70
S IDI+ NPL VP RMN+G +FEC + H FDE + + S+ V + L
Sbjct: 851 SPIDIVLNPLGVPSRMNVGQVFECLMGWAASHLDCRVKVVPFDEMHGPETSKNTVQAYLE 910
Query: 71 KACKQTA--------NPCKT--LDGQMGNPFKEHV 95
A Q NP K +DG+ G F + V
Sbjct: 911 AAKSQPGKDWVYDPENPGKIQLIDGRTGEAFDQPV 945
>gi|443328409|ref|ZP_21057007.1| DNA-directed RNA polymerase, beta subunit [Xenococcus sp. PCC 7305]
gi|442791994|gb|ELS01483.1| DNA-directed RNA polymerase, beta subunit [Xenococcus sp. PCC 7305]
Length = 1103
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 23/95 (24%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLY 70
S +DI+ NPL VP RMN+G ++EC L FDE Y ++ S V K+
Sbjct: 851 SPVDIVLNPLGVPSRMNVGQVYECLLGWAGENLGMRFKIMPFDEMYGKETSLATVHGKIA 910
Query: 71 KACKQTA--------NP--CKTLDGQMGNPFKEHV 95
++ ++ NP K DG+ G F V
Sbjct: 911 ESSRKPGKKWVFDQNNPGKIKVFDGRTGEAFDRPV 945
>gi|363399197|gb|AEW13013.1| RNA polymerase beta subunit [Strombomonas acuminata]
Length = 910
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 23/90 (25%)
Query: 29 IFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKACKQ 75
+ NPL +P RMN+G IFEC L + FDER + + S+++V KL + K+
Sbjct: 696 LLNPLGIPSRMNVGQIFECLLGIAANNLKETYKIQLFDERQENESSKRIVYHKLIETRKK 755
Query: 76 TAN--------PCKT--LDGQMGNPFKEHV 95
+ P KT +DG+ G F + +
Sbjct: 756 SKQKWIFNASYPGKTKVIDGKTGRNFTQPI 785
>gi|116073733|ref|ZP_01470995.1| DNA-directed RNA polymerase beta subunit [Synechococcus sp. RS9916]
gi|116069038|gb|EAU74790.1| DNA-directed RNA polymerase beta subunit [Synechococcus sp. RS9916]
Length = 1097
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFE-----------CSLR--HFDERYKQKGSRKLVLSKLYKA 72
+DI NPL VP RMN+G +FE C ++ FDE Y + S++ V + L +A
Sbjct: 854 VDICLNPLGVPSRMNVGQVFELLMGWAASNLDCRVKVVPFDEMYGAEKSQQTVEAFLKEA 913
Query: 73 CKQTA--------NPCKTL--DGQMGNPFKEHV 95
Q +P K L DG+ G PF + V
Sbjct: 914 ASQPGKDWIYNPDSPGKLLLTDGRTGEPFDQPV 946
>gi|78184182|ref|YP_376617.1| DNA-directed RNA polymerase subunit beta [Synechococcus sp. CC9902]
gi|109914405|sp|Q3AZA4.1|RPOB_SYNS9 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|78168476|gb|ABB25573.1| DNA-directed RNA polymerase, beta subunit [Synechococcus sp.
CC9902]
Length = 1097
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFE-----------CSLR--HFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FE C ++ FDE + + S++ V + L +A
Sbjct: 854 VDIVLNPLGVPSRMNVGQVFELLMGWAASNLDCRVKIIPFDEMHGAEKSQQTVTTFLTEA 913
Query: 73 CKQTA--------NPCKTL--DGQMGNPFKEHV 95
K + NP K + DG+ G PF + V
Sbjct: 914 AKLSGKDWVYNPENPGKLVLRDGRTGLPFDQPV 946
>gi|116071172|ref|ZP_01468441.1| DNA-directed RNA polymerase beta subunit [Synechococcus sp. BL107]
gi|116066577|gb|EAU72334.1| DNA-directed RNA polymerase beta subunit [Synechococcus sp. BL107]
Length = 1097
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFE-----------CSLR--HFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FE C ++ FDE + + S++ V + L +A
Sbjct: 854 VDIVLNPLGVPSRMNVGQVFELLMGWAASNLDCRVKIVPFDEMHGAEKSQQTVTTFLTEA 913
Query: 73 CKQTA--------NPCKTL--DGQMGNPFKEHV 95
K + NP K + DG+ G PF + V
Sbjct: 914 AKLSGKDWVYNPDNPGKLVLRDGRTGLPFDQPV 946
>gi|78213583|ref|YP_382362.1| DNA-directed RNA polymerase subunit beta [Synechococcus sp. CC9605]
gi|109914406|sp|Q3AHX5.1|RPOB_SYNSC RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|78198042|gb|ABB35807.1| DNA-directed RNA polymerase, beta subunit [Synechococcus sp.
CC9605]
Length = 1097
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFE-----------CSLR--HFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FE C +R FDE + + S++ V + L +A
Sbjct: 854 VDIVLNPLGVPSRMNVGQVFELLMGWAASNLDCRVRIVPFDEMHGAEKSQQTVETFLKEA 913
Query: 73 CKQTA--------NPCK--TLDGQMGNPFKEHV 95
KQ +P K DG+ G PF + V
Sbjct: 914 AKQPGKGWVYDPEDPGKLQLRDGRTGLPFDQPV 946
>gi|260435164|ref|ZP_05789134.1| DNA-directed RNA polymerase, beta subunit [Synechococcus sp. WH
8109]
gi|260413038|gb|EEX06334.1| DNA-directed RNA polymerase, beta subunit [Synechococcus sp. WH
8109]
Length = 1097
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFE-----------CSLR--HFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FE C +R FDE + + S++ V + L +A
Sbjct: 854 VDIVLNPLGVPSRMNVGQVFELLMGWAASNLDCRVRIVPFDEMHGAEKSQQTVETFLKEA 913
Query: 73 CKQTA--------NPCK--TLDGQMGNPFKEHV 95
KQ +P K DG+ G PF + V
Sbjct: 914 AKQPGKGWVYDPEDPGKLQLRDGRTGLPFDQPV 946
>gi|317968941|ref|ZP_07970331.1| DNA-directed RNA polymerase subunit beta [Synechococcus sp. CB0205]
Length = 1096
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC----SLRH---------FDERYKQKGSRKLVLSKLYKA 72
IDI+ NPL VP RMN+G +FEC + H FDE + + S+ V + L A
Sbjct: 853 IDIVLNPLGVPSRMNVGQVFECLMGWAASHLDCRVKVVPFDEMHGPETSKNTVQAYLEAA 912
Query: 73 CKQTA--------NPCKT--LDGQMGNPFKEHV 95
Q NP K +DG+ G F + V
Sbjct: 913 KSQPGKDWVYNPDNPGKIQLIDGRTGEAFDQPV 945
>gi|440801933|ref|YP_007317180.1| beta subunit of RNA polymerase (chloroplast) [Monomorphina
aenigmatica]
gi|429484612|gb|AFZ88782.1| beta subunit of RNA polymerase (chloroplast) [Monomorphina
aenigmatica]
Length = 1064
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERY---------KQKGSRKLVLSKLYKA 72
ID++ NPL +P RMN+G I EC L ++ +E+Y K+ S K+V +KL +A
Sbjct: 848 IDMLLNPLGIPSRMNVGQILECLLGLASKNLNEKYRILPFNESEKENISTKIVYNKLNEA 907
Query: 73 CKQT-------AN---PCKTLDGQMGNPFKEHV 95
K+T AN K L+G G F + V
Sbjct: 908 RKKTKKKWLFSANFPGKMKILNGMTGEVFTQPV 940
>gi|159904148|ref|YP_001551492.1| DNA-directed RNA polymerase subunit beta [Prochlorococcus marinus
str. MIT 9211]
gi|226699430|sp|A9BCH6.1|RPOB_PROM4 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|159889324|gb|ABX09538.1| RNA polymerase beta subunit [Prochlorococcus marinus str. MIT 9211]
Length = 1096
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFE-----------CSLR--HFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FE C ++ FDE Y + S + V + L +A
Sbjct: 854 VDIVLNPLGVPSRMNVGQVFELLMGWAASNLDCRVKVVPFDEMYGAEKSYQTVTAYLKEA 913
Query: 73 CK--------QTANPCKTL--DGQMGNPFKEHV 95
+P K L DG+ G PF + V
Sbjct: 914 ASLPGKEWVYNPEDPGKLLLRDGRTGEPFDQPV 946
>gi|319922018|gb|ADV78618.1| RNA polymerase beta subunit [Oncidium hybrid cultivar]
Length = 300
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 17/24 (70%), Positives = 21/24 (87%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL 49
+D++FNPL VP RMN+G IFECSL
Sbjct: 269 VDMVFNPLGVPSRMNVGQIFECSL 292
>gi|319922013|gb|ADV78616.1| RNA polymerase beta subunit [Odontoglossum hybrid cultivar]
gi|319922015|gb|ADV78617.1| RNA polymerase beta subunit [Oncidium hybrid cultivar]
gi|319922020|gb|ADV78619.1| RNA polymerase beta subunit [Oncidium hybrid cultivar]
gi|319922022|gb|ADV78620.1| RNA polymerase beta subunit [Oncidium hybrid cultivar]
Length = 300
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 17/24 (70%), Positives = 21/24 (87%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL 49
+D++FNPL VP RMN+G IFECSL
Sbjct: 269 VDMVFNPLGVPSRMNVGQIFECSL 292
>gi|319922011|gb|ADV78615.1| RNA polymerase beta subunit [Odontoglossum hybrid cultivar]
Length = 300
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 17/24 (70%), Positives = 21/24 (87%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL 49
+D++FNPL VP RMN+G IFECSL
Sbjct: 269 VDMVFNPLGVPSRMNVGQIFECSL 292
>gi|319922005|gb|ADV78613.1| RNA polymerase beta subunit [x Colmanara hybrid cultivar]
gi|319922008|gb|ADV78614.1| RNA polymerase beta subunit [x Degarmoara hybrid cultivar]
Length = 300
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 17/24 (70%), Positives = 21/24 (87%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL 49
+D++FNPL VP RMN+G IFECSL
Sbjct: 269 VDMVFNPLGVPSRMNVGQIFECSL 292
>gi|319921999|gb|ADV78611.1| RNA polymerase beta subunit [x Beallara hybrid cultivar]
gi|319922001|gb|ADV78612.1| RNA polymerase beta subunit [x Beallara hybrid cultivar]
Length = 300
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 17/24 (70%), Positives = 21/24 (87%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL 49
+D++FNPL VP RMN+G IFECSL
Sbjct: 269 VDMVFNPLGVPSRMNVGQIFECSL 292
>gi|315320481|ref|YP_004072537.1| DNA-directed RNA polymerase subunit beta [Thalassiosira oceanica
CCMP1005]
gi|283568954|gb|ADB27491.1| DNA-directed RNA polymerase subunit beta [Thalassiosira oceanica
CCMP1005]
Length = 1364
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 41/89 (46%), Gaps = 23/89 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
IDII NPL VP RMN+G ++EC L FDE Y + SR L+ KL +A
Sbjct: 1118 IDIILNPLGVPSRMNVGQLYECLLGLAGHKLNRRFKILPFDEMYGPEVSRILINKKLRQA 1177
Query: 73 CKQTA-----NPCKT-----LDGQMGNPF 91
+ NP LDG+ G F
Sbjct: 1178 SLENDEAWLFNPYSPGKMVLLDGRTGKEF 1206
>gi|257458178|ref|ZP_05623332.1| DNA-directed RNA polymerase, beta subunit [Treponema vincentii ATCC
35580]
gi|257444472|gb|EEV19561.1| DNA-directed RNA polymerase, beta subunit [Treponema vincentii ATCC
35580]
Length = 1165
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI NPL VP RMNIG I E L DE Y+ Q + + + KL +A
Sbjct: 949 LDICLNPLGVPSRMNIGQILESELGLAGLRLDEWYEAPVFQSPTNEQIEKKLVEAGIPAN 1008
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ K DG+ G PF+ V
Sbjct: 1009 SKVKLRDGRTGMPFQNDVF 1027
>gi|30468229|ref|NP_849116.1| RNA polymerase beta subunit [Cyanidioschyzon merolae strain 10D]
gi|41017710|sp|Q85FR7.1|RPOB_CYAME RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|30409329|dbj|BAC76278.1| DNA-directed RNA polymerase beta chain (chloroplast)
[Cyanidioschyzon merolae strain 10D]
Length = 1036
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 19/85 (22%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------SLRH------FDERYKQKGSRKLVLSKLYKA 72
+D+I NPL VP RMN+G +FE LR FDE Y ++ SR V +L
Sbjct: 826 VDVILNPLGVPSRMNVGQLFEALLGLAAHRLRKRIKIVPFDEMYHKEASRIFVHQQL--- 882
Query: 73 CKQTANPCKTL--DGQMGNPFKEHV 95
K+ A +T+ DG+ G F V
Sbjct: 883 -KRAALSAQTILYDGRSGEKFDNAV 906
>gi|374249504|ref|YP_005088723.1| rpoB gene product [Phaeocystis antarctica]
gi|340008195|gb|AEK26827.1| RNA polymerase beta subunit [Phaeocystis antarctica]
Length = 1092
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 21/91 (23%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLR-------------HFDERYKQKGSRKLVLSKLYKA 72
ID+I NPL VP RMN+G I+EC L FDE + + SR L+ KL ++
Sbjct: 844 IDMILNPLGVPSRMNVGQIYECLLGLAAENFNTRFKVIPFDEMHGVEASRALISKKLIES 903
Query: 73 CKQTA------NPCKTL--DGQMGNPFKEHV 95
+ P K + DG+ G F+ +
Sbjct: 904 AESKKWLFSKNYPGKMVLTDGRTGQTFENPI 934
>gi|194476580|ref|YP_002048759.1| DNA-directed RNA polymerase beta subunit [Paulinella chromatophora]
gi|171191587|gb|ACB42549.1| DNA-directed RNA polymerase beta subunit [Paulinella chromatophora]
Length = 1102
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLR-------------HFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G ++EC L FDE + + S + + + L A
Sbjct: 853 VDIVLNPLGVPSRMNVGQVYECLLGWAAANLDNRMKVVPFDEMHGLEKSTETMKAFLRAA 912
Query: 73 CKQTA--------NPCK--TLDGQMGNPFKEHV 95
KQ +P K +DG+ G PF + V
Sbjct: 913 AKQPGKDWVYNHKDPGKLQLIDGRTGEPFDKPV 945
>gi|217967362|ref|YP_002352868.1| DNA-directed RNA polymerase subunit beta [Dictyoglomus turgidum DSM
6724]
gi|217336461|gb|ACK42254.1| DNA-directed RNA polymerase, beta subunit [Dictyoglomus turgidum
DSM 6724]
Length = 1070
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+DII NPL VP RMN+G I E L FDE + S LV L KA
Sbjct: 858 VDIILNPLGVPSRMNVGQILETHLGWAAKELGIYAIVPPFDEVLGENRSANLVKEMLRKA 917
Query: 73 CKQTANPCKTLDGQMGNPFKEHV 95
DG+ G PF + V
Sbjct: 918 GLPEDGRVVLYDGRTGEPFNQKV 940
>gi|206900188|ref|YP_002250694.1| DNA-directed RNA polymerase, beta subunit [Dictyoglomus
thermophilum H-6-12]
gi|206739291|gb|ACI18349.1| DNA-directed RNA polymerase, beta subunit [Dictyoglomus
thermophilum H-6-12]
Length = 1070
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+DII NPL VP RMN+G I E L FDE + S LV L KA
Sbjct: 858 VDIILNPLGVPSRMNVGQILETHLGWAAKELGLYAIVPPFDEVLGENRSANLVKEMLRKA 917
Query: 73 CKQTANPCKTLDGQMGNPFKEHV 95
DG+ G PF + V
Sbjct: 918 GLPEDGRVVLYDGRTGEPFNQKV 940
>gi|299830351|ref|YP_003734566.1| RNA polymerase beta subunit [Kryptoperidinium foliaceum]
gi|297385053|gb|ADI40351.1| RNA polymerase beta subunit [Kryptoperidinium foliaceum]
Length = 1394
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 19/79 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLR-------------HFDERYKQKGSRKLVLSKLYKA 72
ID+I NPL VP RMN+G ++EC L FDE Y + SR L+ KL +A
Sbjct: 1148 IDVILNPLGVPSRMNVGQLYECLLGLAGDKLNSRFKILPFDEMYGLEMSRILINKKLRQA 1207
Query: 73 CKQTANPCKTLDGQMGNPF 91
K +G + NP+
Sbjct: 1208 S------IKRNEGWLFNPY 1220
>gi|33241089|ref|NP_876031.1| DNA-directed RNA polymerase subunit beta [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
gi|41017662|sp|Q7VA29.1|RPOB_PROMA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|33238618|gb|AAQ00684.1| DNA-directed RNA polymerase beta subunit/140 kD subunit
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 1096
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFE-----------CSLR--HFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G +FE C ++ FDE Y + S + V L +A
Sbjct: 854 VDIVLNPLGVPSRMNVGQVFELLMGWAAANLDCRVKVVPFDEMYGAEKSYETVQLYLKEA 913
Query: 73 CKQTA--------NPCKTL--DGQMGNPFKEHV 95
KQ +P K L DG+ G F + V
Sbjct: 914 AKQPGKEWVFNPDDPGKLLLRDGRTGEAFDQPV 946
>gi|381181206|ref|ZP_09890041.1| DNA-directed RNA polymerase subunit beta [Treponema saccharophilum
DSM 2985]
gi|380766873|gb|EIC00877.1| DNA-directed RNA polymerase subunit beta [Treponema saccharophilum
DSM 2985]
Length = 1174
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 18/79 (22%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKA----- 72
+D+ NPL VP RMNIG I E L R+ ++ Y+ Q S++ + +L KA
Sbjct: 953 LDVCLNPLGVPSRMNIGQIMESELGIAGRYLNQYYECPAFQTPSQEQIADELEKAGLSRD 1012
Query: 73 CKQTANPCKTLDGQMGNPF 91
CKQ DG+ G PF
Sbjct: 1013 CKQVVR-----DGRTGEPF 1026
>gi|378824521|ref|YP_005089691.1| rpoB gene product (chloroplast) [Synedra acus]
gi|371572720|gb|AEX37816.1| RNA polymerase beta subunit (chloroplast) [Synedra acus]
Length = 1378
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 36/103 (34%), Positives = 46/103 (44%), Gaps = 25/103 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSR 62
PF + R +DII NPL VP RMN+G ++EC L FDE Y + SR
Sbjct: 1124 PFLPNGR--PLDIILNPLGVPSRMNVGQLYECLLGLAGDKLNCRFKILPFDEMYGLEMSR 1181
Query: 63 KLVLSKLYKAC-----KQTANPCKT-----LDGQMGNPFKEHV 95
L+ KL +A NP LDG+ G F+ V
Sbjct: 1182 ILINKKLRQASIVNNESWLFNPYAPGKMVLLDGRTGKEFENPV 1224
>gi|113170437|ref|YP_717229.1| RpoB [Ostreococcus tauri]
gi|122235247|sp|Q0P3M6.1|RPOB_OSTTA RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|112806844|emb|CAL36351.1| RpoB [Ostreococcus tauri]
Length = 1088
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 13/60 (21%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------SLRH------FDERYKQKGSRKLVLSKLYKA 72
+D++ NPL VP RMN+G IFEC +L+ FDE + + SR V LYK+
Sbjct: 877 LDMVLNPLGVPSRMNVGQIFECLLGLAANTLKQNFKVLPFDEMHGAEVSRGFVYHYLYKS 936
>gi|224015730|ref|XP_002297513.1| hypothetical protein THAPSDRAFT_bd1267 [Thalassiosira pseudonana
CCMP1335]
gi|220967777|gb|EED86153.1| hypothetical protein THAPSDRAFT_bd1267 [Thalassiosira pseudonana
CCMP1335]
Length = 1358
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 41/89 (46%), Gaps = 23/89 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+DII NPL VP RMN+G ++EC L FDE Y + SR L+ KL +A
Sbjct: 1112 VDIILNPLGVPSRMNVGQLYECLLGLAGHKLNRRFKILPFDEMYGPEVSRILINKKLRQA 1171
Query: 73 CKQTA-----NPCKT-----LDGQMGNPF 91
+ NP LDG+ G F
Sbjct: 1172 SIENDEAWLFNPYSPGKMVLLDGRTGKEF 1200
>gi|118411129|ref|YP_874523.1| DNA-directed RNA polymerase beta chain [Thalassiosira pseudonana]
gi|125987645|sp|A0T0R1.1|RPOB_THAPS RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|116739876|gb|ABK20746.1| DNA-directed RNA polymerase beta chain [Thalassiosira pseudonana]
Length = 1386
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 41/89 (46%), Gaps = 23/89 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+DII NPL VP RMN+G ++EC L FDE Y + SR L+ KL +A
Sbjct: 1140 VDIILNPLGVPSRMNVGQLYECLLGLAGHKLNRRFKILPFDEMYGPEVSRILINKKLRQA 1199
Query: 73 CKQTA-----NPCKT-----LDGQMGNPF 91
+ NP LDG+ G F
Sbjct: 1200 SIENDEAWLFNPYSPGKMVLLDGRTGKEF 1228
>gi|299830556|ref|YP_003735004.1| DNA-directed RNA polymerase beta subunit [Durinskia baltica]
gi|297384920|gb|ADI40219.1| DNA-directed RNA polymerase beta subunit [Durinskia baltica]
Length = 1385
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 13/60 (21%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
IDII NPL VP RMN+G ++EC L FDE Y + SR L+ KL +A
Sbjct: 1139 IDIILNPLGVPSRMNVGQLYECLLGLAGDKLNSRFKILPFDEMYGLEMSRILINKKLRQA 1198
>gi|119953180|ref|YP_945389.1| DNA-directed RNA polymerase subunit beta [Borrelia turicatae 91E135]
gi|254765274|sp|A1QZH7.1|RPOB_BORT9 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|119861951|gb|AAX17719.1| DNA-directed RNA polymerase beta chain [Borrelia turicatae 91E135]
Length = 1155
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI NPL VP RMNIG + E L ++ E Y + + + + KL KA
Sbjct: 943 LDICLNPLGVPSRMNIGQLMESQLGLAGKYLSEYYDVPVFESATNECIQEKLKKAGFNET 1002
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ DG G PF+ V+
Sbjct: 1003 SKAILYDGYTGEPFENEVM 1021
>gi|410463726|ref|ZP_11317223.1| DNA-directed RNA polymerase, beta subunit [Desulfovibrio magneticus
str. Maddingley MBC34]
gi|409983153|gb|EKO39545.1| DNA-directed RNA polymerase, beta subunit [Desulfovibrio magneticus
str. Maddingley MBC34]
Length = 1369
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 20/34 (58%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL 49
PFF+H R +DI+ NPL VP RMNIG I E L
Sbjct: 1105 PFFSHGR--PVDIVLNPLGVPSRMNIGQILETHL 1136
>gi|239907752|ref|YP_002954493.1| DNA-directed RNA polymerase subunit beta [Desulfovibrio magneticus
RS-1]
gi|259494180|sp|C4XIN9.1|RPOB_DESMR RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|239797618|dbj|BAH76607.1| DNA-directed RNA polymerase beta subunit [Desulfovibrio magneticus
RS-1]
Length = 1369
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 20/34 (58%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL 49
PFF+H R +DI+ NPL VP RMNIG I E L
Sbjct: 1105 PFFSHGR--PVDIVLNPLGVPSRMNIGQILETHL 1136
>gi|189499299|ref|YP_001958769.1| DNA-directed RNA polymerase subunit beta [Chlorobium phaeobacteroides
BS1]
gi|189494740|gb|ACE03288.1| DNA-directed RNA polymerase, beta subunit [Chlorobium
phaeobacteroides BS1]
Length = 1302
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYKQK----GSRKLVLSKLYKACKQTA 77
+DI+ NPL VP RMNIG ++E SL R ++K + V +L KA
Sbjct: 1106 VDIVLNPLGVPSRMNIGQLYETSLGWAARALGVQFKTPIFDGATYTEVQEQLEKAGLPMH 1165
Query: 78 NPCKTLDGQMGNPFKEHV 95
+ DG+ G PF + V
Sbjct: 1166 GKVRLYDGRTGEPFDDEV 1183
>gi|373122858|ref|ZP_09536717.1| DNA-directed RNA polymerase, beta subunit [Erysipelotrichaceae
bacterium 21_3]
gi|371662506|gb|EHO27708.1| DNA-directed RNA polymerase, beta subunit [Erysipelotrichaceae
bacterium 21_3]
Length = 1403
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQK-------GSRKLVLSKLYKACKQTAN 78
IDI+ NP VP RMNIG + E L + ++ K G LS + K + T +
Sbjct: 1128 IDIMLNPFGVPSRMNIGQVLEIHLGYAAKKLGVKFSTPVFDGINNTELSDIMKEAEMTVD 1187
Query: 79 PCKTL-DGQMGNPFKEHV 95
+ L DG+ G PF E +
Sbjct: 1188 GKQVLYDGRTGEPFDERI 1205
>gi|386859621|ref|YP_006272327.1| DNA-directed RNA polymerase subunit beta [Borrelia crocidurae str.
Achema]
gi|384934502|gb|AFI31175.1| DNA-directed RNA polymerase subunit beta [Borrelia crocidurae str.
Achema]
Length = 1155
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI NPL VP RMNIG + E L ++ E Y + + + + KL KA
Sbjct: 943 LDICLNPLGVPSRMNIGQLMESQLGLAGKYLGEYYDVPVFESATNECIQEKLKKAGFNET 1002
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ DG G PF+ V+
Sbjct: 1003 SKAVLYDGYTGEPFENEVM 1021
>gi|203287837|ref|YP_002222852.1| DNA-directed RNA polymerase beta chain [Borrelia recurrentis A1]
gi|226699376|sp|B5RRJ7.1|RPOB_BORRA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|201085057|gb|ACH94631.1| DNA-directed RNA polymerase beta chain [Borrelia recurrentis A1]
Length = 1155
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI NPL VP RMNIG + E L ++ E Y + + + + KL KA
Sbjct: 943 LDICLNPLGVPSRMNIGQLMESQLGLAGKYLGEYYDVPVFESATNECIQEKLKKAGFNET 1002
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ DG G PF+ V+
Sbjct: 1003 SKAVLYDGYTGEPFENEVM 1021
>gi|203284301|ref|YP_002222041.1| DNA-directed RNA polymerase beta chain [Borrelia duttonii Ly]
gi|226699373|sp|B5RLU9.1|RPOB_BORDL RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|201083744|gb|ACH93335.1| DNA-directed RNA polymerase beta chain [Borrelia duttonii Ly]
Length = 1155
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI NPL VP RMNIG + E L ++ E Y + + + + KL KA
Sbjct: 943 LDICLNPLGVPSRMNIGQLMESQLGLAGKYLGEYYDVPVFESATNECIQEKLKKAGFNET 1002
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ DG G PF+ V+
Sbjct: 1003 SKAVLYDGYTGEPFENEVM 1021
>gi|187918255|ref|YP_001883818.1| DNA-directed RNA polymerase subunit beta [Borrelia hermsii DAH]
gi|226699374|sp|B2S092.1|RPOB_BORHD RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|119861103|gb|AAX16898.1| DNA-directed RNA polymerase beta chain [Borrelia hermsii DAH]
Length = 1155
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI NPL VP RMNIG + E L ++ E Y + + + + KL KA
Sbjct: 943 LDICLNPLGVPSRMNIGQLMESQLGLAGKYLGEYYDVPVFESATNECIQEKLKKAGFNET 1002
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ DG G PF+ V+
Sbjct: 1003 SKAVLYDGYTGEPFENEVM 1021
>gi|600226|gb|AAB40951.1| RNA polymerase beta subunit [Mycoplasma gallisepticum]
Length = 1390
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 10/62 (16%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQKGSRKLVLSKLYKAC--KQTANPCKTL 83
+DI+ NPL VP RMNIG IFE L + +R+L +KL +AC K+ A+ T+
Sbjct: 1080 LDILLNPLGVPSRMNIGQIFELHLGY--------AARELAKAKLIEACFDKKLADQLDTV 1131
Query: 84 DG 85
G
Sbjct: 1132 FG 1133
>gi|294660312|ref|NP_852995.2| DNA-directed RNA polymerase subunit beta [Mycoplasma gallisepticum
str. R(low)]
gi|401766107|ref|YP_006581113.1| DNA-directed RNA polymerase subunit beta (RNAP subunit beta)
[Mycoplasma gallisepticum VA94_7994-1-7P]
gi|401766863|ref|YP_006581868.1| DNA-directed RNA polymerase subunit beta (RNAP subunit beta)
[Mycoplasma gallisepticum NC95_13295-2-2P]
gi|401767618|ref|YP_006582622.1| DNA-directed RNA polymerase subunit beta (RNAP subunit beta)
[Mycoplasma gallisepticum NC96_1596-4-2P]
gi|401769144|ref|YP_006584146.1| DNA-directed RNA polymerase subunit beta (RNAP subunit beta)
[Mycoplasma gallisepticum WI01_2001.043-13-2P]
gi|401770637|ref|YP_006585637.1| DNA-directed RNA polymerase subunit beta (RNAP subunit beta)
[Mycoplasma gallisepticum CA06_2006.052-5-2P]
gi|33860205|sp|P47715.2|RPOB_MYCGA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|284811968|gb|AAP56563.2| DNA-directed RNA polymerase subunit beta (RNAP subunit beta)
[Mycoplasma gallisepticum str. R(low)]
gi|400272369|gb|AFP75832.1| DNA-directed RNA polymerase subunit beta (RNAP subunit beta)
[Mycoplasma gallisepticum VA94_7994-1-7P]
gi|400273137|gb|AFP76599.1| DNA-directed RNA polymerase subunit beta (RNAP subunit beta)
[Mycoplasma gallisepticum NC95_13295-2-2P]
gi|400273892|gb|AFP77353.1| DNA-directed RNA polymerase subunit beta (RNAP subunit beta)
[Mycoplasma gallisepticum NC96_1596-4-2P]
gi|400275425|gb|AFP78884.1| DNA-directed RNA polymerase subunit beta (RNAP subunit beta)
[Mycoplasma gallisepticum WI01_2001.043-13-2P]
gi|400276917|gb|AFP80374.1| DNA-directed RNA polymerase subunit beta (RNAP subunit beta)
[Mycoplasma gallisepticum CA06_2006.052-5-2P]
Length = 1390
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 10/62 (16%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQKGSRKLVLSKLYKAC--KQTANPCKTL 83
+DI+ NPL VP RMNIG IFE L + +R+L +KL +AC K+ A+ T+
Sbjct: 1080 LDILLNPLGVPSRMNIGQIFELHLGY--------AARELAKAKLIEACFDKKLADQLDTV 1131
Query: 84 DG 85
G
Sbjct: 1132 FG 1133
>gi|401771400|ref|YP_006586399.1| DNA-directed RNA polymerase subunit beta (RNAP subunit beta)
[Mycoplasma gallisepticum NC08_2008.031-4-3P]
gi|400277681|gb|AFP81137.1| DNA-directed RNA polymerase subunit beta (RNAP subunit beta)
[Mycoplasma gallisepticum NC08_2008.031-4-3P]
Length = 1390
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 10/62 (16%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQKGSRKLVLSKLYKAC--KQTANPCKTL 83
+DI+ NPL VP RMNIG IFE L + +R+L +KL +AC K+ A+ T+
Sbjct: 1080 LDILLNPLGVPSRMNIGQIFELHLGY--------AARELAKAKLIEACFDKKLADQLDTV 1131
Query: 84 DG 85
G
Sbjct: 1132 FG 1133
>gi|401769894|ref|YP_006584895.1| DNA-directed RNA polymerase subunit beta (RNAP subunit beta)
[Mycoplasma gallisepticum NC06_2006.080-5-2P]
gi|400276172|gb|AFP79630.1| DNA-directed RNA polymerase subunit beta (RNAP subunit beta)
[Mycoplasma gallisepticum NC06_2006.080-5-2P]
Length = 1390
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 10/62 (16%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQKGSRKLVLSKLYKAC--KQTANPCKTL 83
+DI+ NPL VP RMNIG IFE L + +R+L +KL +AC K+ A+ T+
Sbjct: 1080 LDILLNPLGVPSRMNIGQIFELHLGY--------AARELAKAKLIEACFDKKLADQLDTV 1131
Query: 84 DG 85
G
Sbjct: 1132 FG 1133
>gi|401768392|ref|YP_006583395.1| DNA-directed RNA polymerase subunit beta (RNAP subunit beta)
[Mycoplasma gallisepticum NY01_2001.047-5-1P]
gi|400274664|gb|AFP78124.1| DNA-directed RNA polymerase subunit beta (RNAP subunit beta)
[Mycoplasma gallisepticum NY01_2001.047-5-1P]
Length = 1390
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 10/62 (16%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQKGSRKLVLSKLYKAC--KQTANPCKTL 83
+DI+ NPL VP RMNIG IFE L + +R+L +KL +AC K+ A+ T+
Sbjct: 1080 LDILLNPLGVPSRMNIGQIFELHLGY--------AARELAKAKLIEACFDKKLADQLDTV 1131
Query: 84 DG 85
G
Sbjct: 1132 FG 1133
>gi|365822416|gb|AEX01182.1| RNA polymerase beta subunit [Mycoplasma gallisepticum]
Length = 1379
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 10/62 (16%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQKGSRKLVLSKLYKAC--KQTANPCKTL 83
+DI+ NPL VP RMNIG IFE L + +R+L +KL +AC K+ A+ T+
Sbjct: 1072 LDILLNPLGVPSRMNIGQIFELHLGY--------AARELAKAKLIEACFDKKLADQLDTV 1123
Query: 84 DG 85
G
Sbjct: 1124 FG 1125
>gi|385326458|ref|YP_005880895.1| DNA-directed RNA polymerase subunit beta (RNAP subunit beta)
[Mycoplasma gallisepticum str. F]
gi|284931614|gb|ADC31552.1| DNA-directed RNA polymerase subunit beta (RNAP subunit beta)
[Mycoplasma gallisepticum str. F]
Length = 1390
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 10/62 (16%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQKGSRKLVLSKLYKAC--KQTANPCKTL 83
+DI+ NPL VP RMNIG IFE L + +R+L +KL +AC K+ A+ T+
Sbjct: 1080 LDILLNPLGVPSRMNIGQIFELHLGY--------AARELAKAKLIEACFDKKLADQLDTV 1131
Query: 84 DG 85
G
Sbjct: 1132 FG 1133
>gi|385325316|ref|YP_005879754.1| DNA-directed RNA polymerase subunit beta (RNAP subunit beta)
[Mycoplasma gallisepticum str. R(high)]
gi|284930472|gb|ADC30411.1| DNA-directed RNA polymerase subunit beta (RNAP subunit beta)
[Mycoplasma gallisepticum str. R(high)]
Length = 1389
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 10/62 (16%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQKGSRKLVLSKLYKAC--KQTANPCKTL 83
+DI+ NPL VP RMNIG IFE L + +R+L +KL +AC K+ A+ T+
Sbjct: 1080 LDILLNPLGVPSRMNIGQIFELHLGY--------AARELAKAKLIEACFDKKLADQLDTV 1131
Query: 84 DG 85
G
Sbjct: 1132 FG 1133
>gi|383788809|ref|YP_005473378.1| DNA-directed RNA polymerase subunit beta [Caldisericum exile
AZM16c01]
gi|381364446|dbj|BAL81275.1| DNA-directed RNA polymerase subunit beta [Caldisericum exile
AZM16c01]
Length = 1398
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSL----RHFDERYKQK----GSRKLVLSKLYKACKQ 75
+ ID+I +PL VP RMNIG I E +L R+ + R S K V S L KA
Sbjct: 1167 TTIDVIVSPLGVPSRMNIGQILEANLGIAARNLNVRVVTPSFIGASEKDVRSLLKKANLD 1226
Query: 76 TANPCKTLDGQMGNPFKEHV 95
+ DG+ G PF+ V
Sbjct: 1227 ESGQMTVYDGRTGKPFEYKV 1246
>gi|193214890|ref|YP_001996089.1| DNA-directed RNA polymerase subunit beta [Chloroherpeton thalassium
ATCC 35110]
gi|193088367|gb|ACF13642.1| DNA-directed RNA polymerase, beta subunit [Chloroherpeton thalassium
ATCC 35110]
Length = 1295
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQKGSRKL--------VLSKLYKACKQTA 77
+DI+ NPL VP RMNIG +FE SL + K + + V KL A
Sbjct: 1099 VDIVLNPLGVPSRMNIGQLFETSLGWAASKLGVKFATPIFDGATYAEVQQKLKDAGLPVH 1158
Query: 78 NPCKTLDGQMGNPFKEHV 95
K DG+ G PF + V
Sbjct: 1159 GKIKLHDGRTGEPFDDEV 1176
>gi|218960790|ref|YP_001740565.1| RNA polymerase, beta subunit [Candidatus Cloacamonas acidaminovorans]
gi|167729447|emb|CAO80358.1| RNA polymerase, beta subunit [Candidatus Cloacamonas acidaminovorans
str. Evry]
Length = 1258
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLR--------HFDERYKQKGSRKLVLSKLYKACKQTA 77
+DI+ NPL VP RMNIG I E L + S + ++S+L KA
Sbjct: 1061 VDIVLNPLGVPSRMNIGQIMETHLGWAAKTLGFEVETPIFDGASNEDIVSELRKAGLPED 1120
Query: 78 NPCKTLDGQMGNPFKEHV 95
DG+ G PFKE V
Sbjct: 1121 GKTVLYDGKSGEPFKERV 1138
>gi|11467566|ref|NP_043712.1| RNA polymerase beta subunit [Odontella sinensis]
gi|1350847|sp|P49466.1|RPOB_ODOSI RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|1185261|emb|CAA91744.1| RNA polymerase beta-chain [Odontella sinensis]
Length = 1379
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+DII NPL VP RMN+G ++EC L FDE Y + SR L+ KL +A
Sbjct: 1133 VDIILNPLGVPSRMNVGQLYECLLGIAGHKLNRRFKILPFDEMYGPEVSRILINKKLRQA 1192
Query: 73 CKQTA-----NPCKT-----LDGQMGNPFKEHV 95
+ NP +DG+ G F+ +
Sbjct: 1193 SIENDEAWLFNPYSPGKMVLIDGRTGKEFENPI 1225
>gi|224531803|ref|ZP_03672435.1| DNA-directed RNA polymerase, beta subunit [Borrelia valaisiana VS116]
gi|224511268|gb|EEF81674.1| DNA-directed RNA polymerase, beta subunit [Borrelia valaisiana VS116]
Length = 1155
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI NPL VP RMNIG + E L ++ +E Y + + + + KL KA
Sbjct: 943 LDICLNPLGVPSRMNIGQLMESQLGLAGKYLNESYNVPVFESATNEQIQEKLKKAGFNPT 1002
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ DG G PF+ V+
Sbjct: 1003 SKEILYDGYTGEPFENEVM 1021
>gi|160914579|ref|ZP_02076794.1| hypothetical protein EUBDOL_00587 [Eubacterium dolichum DSM 3991]
gi|158433737|gb|EDP12026.1| DNA-directed RNA polymerase, beta subunit [Eubacterium dolichum DSM
3991]
Length = 1395
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQK-------GSRKLVLSKLYKACKQTAN 78
+DI+ NP VP RMNIG + E L + ++ K G LS + K T++
Sbjct: 1131 VDIMLNPFGVPSRMNIGQVLEIHLGYAAKKLGVKFSTPVFDGINNAELSDIMKEANMTSD 1190
Query: 79 PCKTL-DGQMGNPFKEHV 95
+ L DG+ G PF E +
Sbjct: 1191 GKQVLYDGRTGEPFDERI 1208
>gi|346317419|ref|ZP_08858905.1| DNA-directed RNA polymerase, beta subunit [Erysipelotrichaceae
bacterium 2_2_44A]
gi|345900509|gb|EGX70331.1| DNA-directed RNA polymerase, beta subunit [Erysipelotrichaceae
bacterium 2_2_44A]
Length = 1403
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQK-------GSRKLVLSKLYKACKQTAN 78
+DI+ NP VP RMNIG + E L + ++ K G LS + K + T +
Sbjct: 1128 VDIMLNPFGVPSRMNIGQVLEIHLGYAAKKLGVKFSTPVFDGINNTELSDIMKEAEMTVD 1187
Query: 79 PCKTL-DGQMGNPFKEHV 95
+ L DG+ G PF E +
Sbjct: 1188 GKQVLYDGRTGEPFDERI 1205
>gi|313898216|ref|ZP_07831754.1| DNA-directed RNA polymerase, beta subunit [Clostridium sp. HGF2]
gi|422328931|ref|ZP_16409957.1| DNA-directed RNA polymerase, beta subunit [Erysipelotrichaceae
bacterium 6_1_45]
gi|312956980|gb|EFR38610.1| DNA-directed RNA polymerase, beta subunit [Clostridium sp. HGF2]
gi|371658553|gb|EHO23832.1| DNA-directed RNA polymerase, beta subunit [Erysipelotrichaceae
bacterium 6_1_45]
Length = 1403
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQK-------GSRKLVLSKLYKACKQTAN 78
+DI+ NP VP RMNIG + E L + ++ K G LS + K + T +
Sbjct: 1128 VDIMLNPFGVPSRMNIGQVLEIHLGYAAKKLGVKFSTPVFDGINNTELSDIMKEAEMTVD 1187
Query: 79 PCKTL-DGQMGNPFKEHV 95
+ L DG+ G PF E +
Sbjct: 1188 GKQVLYDGRTGEPFDERI 1205
>gi|309778358|ref|ZP_07673283.1| DNA-directed RNA polymerase, beta subunit [Erysipelotrichaceae
bacterium 3_1_53]
gi|308913889|gb|EFP59704.1| DNA-directed RNA polymerase, beta subunit [Erysipelotrichaceae
bacterium 3_1_53]
Length = 1403
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQK-------GSRKLVLSKLYKACKQTAN 78
+DI+ NP VP RMNIG + E L + ++ K G LS + K + T +
Sbjct: 1128 VDIMLNPFGVPSRMNIGQVLEIHLGYAAKKLGVKFSTPVFDGINNTELSDIMKEAEMTVD 1187
Query: 79 PCKTL-DGQMGNPFKEHV 95
+ L DG+ G PF E +
Sbjct: 1188 GKQVLYDGRTGEPFDERI 1205
>gi|427388293|ref|ZP_18884176.1| DNA-directed RNA polymerase subunit beta [Bacteroides oleiciplenus
YIT 12058]
gi|425724876|gb|EKU87750.1| DNA-directed RNA polymerase subunit beta [Bacteroides oleiciplenus
YIT 12058]
Length = 1270
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYKQKGSRKLVLSKLYKACKQTANP-- 79
+DI+ NPL VP RMNIG IFE L R ++ L L + + P
Sbjct: 1078 VDIVLNPLGVPSRMNIGQIFEAVLGSAGRKLGVKFATPIFDGATLDNLNEWTDKAGLPRY 1137
Query: 80 --CKTLDGQMGNPFKEH 94
K DG G PF +H
Sbjct: 1138 GKTKLYDGGTGEPFDQH 1154
>gi|373453945|ref|ZP_09545830.1| DNA-directed RNA polymerase, beta subunit [Eubacterium sp. 3_1_31]
gi|371962761|gb|EHO80343.1| DNA-directed RNA polymerase, beta subunit [Eubacterium sp. 3_1_31]
Length = 1395
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQKGSRKLV-------LSKLYKACKQTAN 78
IDI+ NP VP RMNIG + E L + ++ K S + LS + K T +
Sbjct: 1128 IDIMLNPFGVPSRMNIGQVLEIHLGYAAKKLGVKFSTPVFDGINNQELSDIMKEADMTVD 1187
Query: 79 PCKTL-DGQMGNPFKEHV 95
+ L DG+ G PF E +
Sbjct: 1188 GKQVLYDGRTGEPFDERI 1205
>gi|293399719|ref|ZP_06643865.1| DNA-directed RNA polymerase, beta subunit [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|291306119|gb|EFE47362.1| DNA-directed RNA polymerase, beta subunit [Erysipelotrichaceae
bacterium 5_2_54FAA]
Length = 1398
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQKGSRKLV-------LSKLYKACKQTAN 78
IDI+ NP VP RMNIG + E L + ++ K S + LS + K T +
Sbjct: 1131 IDIMLNPFGVPSRMNIGQVLEIHLGYAAKKLGVKFSTPVFDGINNQELSDIMKEADMTVD 1190
Query: 79 PCKTL-DGQMGNPFKEHV 95
+ L DG+ G PF E +
Sbjct: 1191 GKQVLYDGRTGEPFDERI 1208
>gi|451980676|ref|ZP_21929062.1| DNA-directed RNA polymerase, beta subunit [Nitrospina gracilis 3/211]
gi|451762012|emb|CCQ90301.1| DNA-directed RNA polymerase, beta subunit [Nitrospina gracilis 3/211]
Length = 1401
Score = 44.3 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 18/84 (21%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
I++I NPL VP RMN+G IFE +L +H FD + R LV S
Sbjct: 1204 IELILNPLGVPSRMNVGQIFETNLGMAAKASGKHVATPVFDGAKEDDVRRMLVDS----G 1259
Query: 73 CKQTANPCKTLDGQMGNPFKEHVL 96
C T DG+ G PF + V+
Sbjct: 1260 CSPTGE-VSLFDGRTGQPFHQKVM 1282
>gi|115443591|ref|YP_778610.1| RNA polymerase beta subunit [Bigelowiella natans]
gi|122227441|sp|Q06J17.1|RPOB_BIGNA RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|110810236|gb|ABG91442.1| RNA polymerase beta subunit [Bigelowiella natans]
Length = 1099
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 13/66 (19%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRH-------------FDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMNIG + EC L FDE + + SR + S LY +
Sbjct: 892 LDILLNPLGVPSRMNIGQVLECLLGLSCFYLQRRFKVIPFDESFGFEVSRNFIYSNLYFS 951
Query: 73 CKQTAN 78
+T N
Sbjct: 952 NIKTGN 957
>gi|332298919|ref|YP_004440841.1| DNA-directed RNA polymerase subunit beta [Treponema brennaborense DSM
12168]
gi|332182022|gb|AEE17710.1| DNA-directed RNA polymerase subunit beta [Treponema brennaborense DSM
12168]
Length = 1173
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI NPL VP RMNIG I E L + +E Y+ Q S + + KL +A
Sbjct: 957 LDICLNPLGVPSRMNIGQIMESELGLAGMYLNEWYEAPVFQSPSNEQISQKLVEAGFNAN 1016
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ DG+ G PF V
Sbjct: 1017 SKATLRDGRTGEPFLNDVF 1035
>gi|410679165|ref|YP_006931567.1| DNA-directed RNA polymerase subunit beta [Borrelia afzelii HLJ01]
gi|408536553|gb|AFU74684.1| DNA-directed RNA polymerase subunit beta [Borrelia afzelii HLJ01]
Length = 1155
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI NPL VP RMNIG + E L ++ E Y + + + + KL KA
Sbjct: 943 LDICLNPLGVPSRMNIGQLMESQLGLAGKYLSESYNVPVFESATNEQIQEKLKKAGFNPT 1002
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ DG G PF+ V+
Sbjct: 1003 SKEILYDGYTGEPFENEVM 1021
>gi|216263864|ref|ZP_03435858.1| DNA-directed RNA polymerase, beta subunit [Borrelia afzelii ACA-1]
gi|215979908|gb|EEC20730.1| DNA-directed RNA polymerase, beta subunit [Borrelia afzelii ACA-1]
Length = 1155
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI NPL VP RMNIG + E L ++ E Y + + + + KL KA
Sbjct: 943 LDICLNPLGVPSRMNIGQLMESQLGLAGKYLSESYNVPVFESATNEQIQEKLKKAGFNPT 1002
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ DG G PF+ V+
Sbjct: 1003 SKEILYDGYTGEPFENEVM 1021
>gi|111115218|ref|YP_709836.1| DNA-directed RNA polymerase subunit beta [Borrelia afzelii PKo]
gi|123341351|sp|Q0SNB8.1|RPOB_BORAP RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|110890492|gb|ABH01660.1| DNA-directed RNA polymerase [Borrelia afzelii PKo]
Length = 1155
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI NPL VP RMNIG + E L ++ E Y + + + + KL KA
Sbjct: 943 LDICLNPLGVPSRMNIGQLMESQLGLAGKYLSESYNVPVFESATNEQIQEKLKKAGFNPT 1002
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ DG G PF+ V+
Sbjct: 1003 SKEILYDGYTGEPFENEVM 1021
>gi|384206886|ref|YP_005592607.1| DNA-directed RNA polymerase subunit beta [Borrelia afzelii PKo]
gi|342856769|gb|AEL69617.1| DNA-directed RNA polymerase, beta subunit [Borrelia afzelii PKo]
Length = 1155
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI NPL VP RMNIG + E L ++ E Y + + + + KL KA
Sbjct: 943 LDICLNPLGVPSRMNIGQLMESQLGLAGKYLSESYNVPVFESATNEQIQEKLKKAGFNPT 1002
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ DG G PF+ V+
Sbjct: 1003 SKEILYDGYTGEPFENEVM 1021
>gi|193213522|ref|YP_001999475.1| DNA-directed RNA polymerase subunit beta [Chlorobaculum parvum NCIB
8327]
gi|193086999|gb|ACF12275.1| DNA-directed RNA polymerase, beta subunit [Chlorobaculum parvum NCIB
8327]
Length = 1301
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI+ NPL VP RMNIG ++E SL + ++K + K V L KA
Sbjct: 1105 VDIVLNPLGVPSRMNIGQLYETSLGWAGKKLGVKFKTPIFNGATYKEVQENLEKAGLPGH 1164
Query: 78 NPCKTLDGQMGNPFKEHV 95
K DG+ G F + V
Sbjct: 1165 GKVKLFDGRTGEQFHDEV 1182
>gi|218282082|ref|ZP_03488381.1| hypothetical protein EUBIFOR_00956, partial [Eubacterium biforme
DSM 3989]
gi|218216937|gb|EEC90475.1| hypothetical protein EUBIFOR_00956 [Eubacterium biforme DSM 3989]
Length = 529
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQKGSRKLV-------LSKLYKACKQTAN 78
+DI+ NP VP RMNIG I E L + + K S + L + + T +
Sbjct: 290 VDILLNPFGVPSRMNIGQILEIHLGYAARKLGVKFSTSVFDGLSNEDLQDVMREASMTVD 349
Query: 79 PCKTL-DGQMGNPFKEHV 95
+ L DGQ G PF E +
Sbjct: 350 GKQVLYDGQTGQPFDERI 367
>gi|194246782|ref|YP_002004421.1| DNA-directed RNA polymerase subunit beta [Candidatus Phytoplasma
mali]
gi|254765298|sp|B3QZH0.1|RPOB_PHYMT RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|193807139|emb|CAP18577.1| DNA-directed RNA polymerase, beta chain [Candidatus Phytoplasma mali]
Length = 1273
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQK-------GSRKLVLSKLYKACKQT 76
+ IDII NPL VP RMNIG I E L ++ K G L K+ K K +
Sbjct: 1055 TTIDIILNPLGVPSRMNIGQILEMHLGIAAQKLNIKVATPVFDGVNNDDLRKIIKEAKLS 1114
Query: 77 ANPCKTL-DGQMGNPFKEHV 95
+ TL DG+ G PF +
Sbjct: 1115 LDGKMTLYDGRTGEPFDSSI 1134
>gi|51598646|ref|YP_072834.1| DNA-directed RNA polymerase subunit beta [Borrelia garinii PBi]
gi|81610031|sp|Q661M9.1|RPOB_BORGA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|51573217|gb|AAU07242.1| DNA-directed RNA polymerase [Borrelia garinii PBi]
Length = 1155
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI NPL VP RMNIG + E L ++ E Y + + + + KL KA
Sbjct: 943 LDICLNPLGVPSRMNIGQLMESQLGLAGKYLGESYNVPVFESATNEQIQEKLKKAGFNPT 1002
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ DG G PF+ V+
Sbjct: 1003 SKEILYDGYTGEPFENEVM 1021
>gi|386853794|ref|YP_006203079.1| DNA-directed RNA polymerase subunit beta [Borrelia garinii BgVir]
gi|408671012|ref|YP_006871083.1| DNA-directed RNA polymerase subunit beta [Borrelia garinii NMJW1]
gi|365193828|gb|AEW68726.1| RpoB [Borrelia garinii BgVir]
gi|407240834|gb|AFT83717.1| DNA-directed RNA polymerase subunit beta [Borrelia garinii NMJW1]
Length = 1155
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI NPL VP RMNIG + E L ++ E Y + + + + KL KA
Sbjct: 943 LDICLNPLGVPSRMNIGQLMESQLGLAGKYLGESYNVPVFESATNEQIQEKLKKAGFNPT 1002
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ DG G PF+ V+
Sbjct: 1003 SKEILYDGYTGEPFENEVM 1021
>gi|343127701|ref|YP_004777632.1| DNA-directed RNA polymerase subunit beta [Borrelia bissettii DN127]
gi|342222389|gb|AEL18567.1| DNA-directed RNA polymerase, beta subunit [Borrelia bissettii DN127]
Length = 1155
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI NPL VP RMNIG + E L ++ E Y + + + + KL KA
Sbjct: 943 LDICLNPLGVPSRMNIGQLMESQLGLAGKYLGESYNVPVFESATNEQIQEKLKKAGFNPT 1002
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ DG G PF+ V+
Sbjct: 1003 SKEILYDGYTGEPFENEVM 1021
>gi|219685446|ref|ZP_03540264.1| DNA-directed RNA polymerase, beta subunit [Borrelia garinii Far04]
gi|219673002|gb|EED30023.1| DNA-directed RNA polymerase, beta subunit [Borrelia garinii Far04]
Length = 1155
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI NPL VP RMNIG + E L ++ E Y + + + + KL KA
Sbjct: 943 LDICLNPLGVPSRMNIGQLMESQLGLAGKYLGESYNVPVFESATNEQIQEKLKKAGFNPT 1002
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ DG G PF+ V+
Sbjct: 1003 SKEILYDGYTGEPFENEVM 1021
>gi|219684654|ref|ZP_03539597.1| DNA-directed RNA polymerase, beta subunit [Borrelia garinii PBr]
gi|219672016|gb|EED29070.1| DNA-directed RNA polymerase, beta subunit [Borrelia garinii PBr]
Length = 1155
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI NPL VP RMNIG + E L ++ E Y + + + + KL KA
Sbjct: 943 LDICLNPLGVPSRMNIGQLMESQLGLAGKYLGESYNVPVFESATNEQIQEKLKKAGFNPT 1002
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ DG G PF+ V+
Sbjct: 1003 SKEILYDGYTGEPFENEVM 1021
>gi|330850816|ref|YP_004376566.1| DNA-directed RNA polymerase beta chain [Fistulifera sp. JPCC DA0580]
gi|328835636|dbj|BAK18932.1| DNA-directed RNA polymerase beta chain [Fistulifera sp. JPCC DA0580]
Length = 1397
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 13/60 (21%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G ++EC L FDE Y + SR L+ KL +A
Sbjct: 1151 VDILLNPLGVPSRMNVGQLYECLLGLAGDKLNCRFKILPFDEMYGLEVSRILINKKLRQA 1210
>gi|297618392|ref|YP_003703551.1| DNA-directed RNA polymerase subunit beta [Syntrophothermus
lipocalidus DSM 12680]
gi|297146229|gb|ADI02986.1| DNA-directed RNA polymerase, beta subunit [Syntrophothermus
lipocalidus DSM 12680]
Length = 1139
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQKG-----------SRKLVLSKLYKACK 74
++I+ NPL VP RMNIG + EC H K G + +L+ KL +A
Sbjct: 857 VEIVLNPLGVPSRMNIGQVLEC---HLGLVAKTLGFNVASPVFDGATEELIFKKLAEAGL 913
Query: 75 QTANPCKTLDGQMGNPFKEHV 95
+ DG+ G PF V
Sbjct: 914 PPDGKIQLYDGRTGEPFDNKV 934
>gi|113476515|ref|YP_722576.1| DNA-directed RNA polymerase subunit beta [Trichodesmium erythraeum
IMS101]
gi|123160622|sp|Q110H1.1|RPOB_TRIEI RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|110167563|gb|ABG52103.1| DNA-directed RNA polymerase, beta subunit [Trichodesmium erythraeum
IMS101]
Length = 1102
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 13/53 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC---------SLRH----FDERYKQKGSRKLV 65
ID++ NPL VP RMN+G IFEC S+R FDE + + SR+ V
Sbjct: 853 IDVVLNPLGVPSRMNVGQIFECLLGWAGEILSVRFKCVPFDEMHGPEKSRETV 905
>gi|224537809|ref|ZP_03678348.1| hypothetical protein BACCELL_02696 [Bacteroides cellulosilyticus DSM
14838]
gi|423227226|ref|ZP_17213690.1| DNA-directed RNA polymerase subunit beta [Bacteroides
cellulosilyticus CL02T12C19]
gi|224520629|gb|EEF89734.1| hypothetical protein BACCELL_02696 [Bacteroides cellulosilyticus DSM
14838]
gi|392624366|gb|EIY18458.1| DNA-directed RNA polymerase subunit beta [Bacteroides
cellulosilyticus CL02T12C19]
Length = 1270
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQKGSRKL----VLSKLYKACKQTANP-- 79
+DI+ NPL VP RMNIG IFE L + K + + L L + + P
Sbjct: 1078 VDIVLNPLGVPSRMNIGQIFEAVLGRAGKNLGVKFATPIFDGATLDDLNEWTDKAGLPRY 1137
Query: 80 --CKTLDGQMGNPFKEH 94
K DG G PF +H
Sbjct: 1138 GKTKLYDGGTGEPFDQH 1154
>gi|189465411|ref|ZP_03014196.1| hypothetical protein BACINT_01764 [Bacteroides intestinalis DSM
17393]
gi|189437685|gb|EDV06670.1| DNA-directed RNA polymerase, beta subunit [Bacteroides intestinalis
DSM 17393]
Length = 1270
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQKGSRKL----VLSKLYKACKQTANP-- 79
+DI+ NPL VP RMNIG IFE L + K + + L L + + P
Sbjct: 1078 VDIVLNPLGVPSRMNIGQIFEAVLGRAGKNLGVKFATPIFDGATLDDLNEWTDKAGLPRY 1137
Query: 80 --CKTLDGQMGNPFKEH 94
K DG G PF +H
Sbjct: 1138 GKTKLYDGGTGEPFDQH 1154
>gi|224533239|ref|ZP_03673839.1| DNA-directed RNA polymerase subunit beta [Borrelia burgdorferi
WI91-23]
gi|224511966|gb|EEF82367.1| DNA-directed RNA polymerase subunit beta [Borrelia burgdorferi
WI91-23]
Length = 302
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI NPL VP RMNIG + E L ++ E Y + + + + KL KA
Sbjct: 90 LDICLNPLGVPSRMNIGQLMESQLGLAGKYLGESYNVPVFESATNEQIHEKLKKAGFNPT 149
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ DG G PF+ V+
Sbjct: 150 SKEILYDGYTGEPFENEVM 168
>gi|224534641|ref|ZP_03675215.1| DNA-directed RNA polymerase, beta subunit [Borrelia spielmanii A14S]
gi|224514110|gb|EEF84430.1| DNA-directed RNA polymerase, beta subunit [Borrelia spielmanii A14S]
Length = 1155
Score = 43.1 bits (100), Expect = 0.024, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI NPL VP RMNIG + E L ++ E Y + + + + KL KA
Sbjct: 943 LDICLNPLGVPSRMNIGQLMESQLGLAGKYLSEFYNVPVFESATNEQIQEKLKKAGFNPT 1002
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ DG G PF+ V+
Sbjct: 1003 SKEILYDGYTGEPFENEVM 1021
>gi|118411017|ref|YP_874412.1| DNA-directed RNA polymerase beta chain [Phaeodactylum tricornutum]
gi|125987643|sp|A0T0D7.1|RPOB_PHATC RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|116739764|gb|ABK20635.1| DNA-directed RNA polymerase beta chain [Phaeodactylum tricornutum]
Length = 1389
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 13/60 (21%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL-------------RHFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMN+G ++EC L FDE Y + SR L+ KL +A
Sbjct: 1143 LDILLNPLGVPSRMNVGQLYECLLGLAGDKLNARFKILPFDEMYGLEISRILINKKLRQA 1202
>gi|126797585|gb|ABO27324.1| DNA-directed RNA polymerase beta chain [Sinorhizobium arboris]
Length = 224
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQKGSRKLVLSKLYKACKQTANPCKTL 83
+++D++ NPL VP RMN+G I E H G R + Y+A A +T+
Sbjct: 37 THVDVVLNPLGVPSRMNVGQILET---HLGWACAGMGKRIGAMLDAYQASGDIAPLRQTI 93
Query: 84 D-----GQMGNPFKEH 94
D G G P K++
Sbjct: 94 DDVIGSGPKGEPIKQY 109
>gi|330837661|ref|YP_004412302.1| DNA-directed RNA polymerase subunit beta [Sphaerochaeta coccoides DSM
17374]
gi|329749564|gb|AEC02920.1| DNA-directed RNA polymerase subunit beta [Sphaerochaeta coccoides DSM
17374]
Length = 1172
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSLR----HFDERYK----QKGSRKLVLSKLYKACKQ 75
+++D+ NPL VP RMNIG + E L + +E Y Q GS + + +K+ +A
Sbjct: 954 TSLDVCLNPLGVPSRMNIGQLLETQLGWAAVNLEEWYSTPVFQSGSMEQIEAKMREAGLP 1013
Query: 76 TANPCKTLDGQMGNPF 91
+ DG+ G PF
Sbjct: 1014 ENSKTTLYDGRTGVPF 1029
>gi|374857044|dbj|BAL59897.1| DNA-directed RNA polymerase subunit beta [uncultured candidate
division OP1 bacterium]
Length = 1111
Score = 42.7 bits (99), Expect = 0.029, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 19/89 (21%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL---RHFDERYKQK-----GSRKLVLSKLYKACKQTA 77
+D+I NPL VP RMN+G +FE L H Y + +L +LYKA K+
Sbjct: 898 VDMILNPLGVPSRMNLGQVFEAHLGWVAHLKGEYMASPVFDGAKEEKILDELYKARKEHG 957
Query: 78 -----NPCKTL------DGQMGNPFKEHV 95
+P + DG+ G PF+ V
Sbjct: 958 LADGDDPQYPMGKVILRDGRTGEPFEHPV 986
>gi|320352910|ref|YP_004194249.1| DNA-directed RNA polymerase subunit beta [Desulfobulbus propionicus
DSM 2032]
gi|320121412|gb|ADW16958.1| DNA-directed RNA polymerase subunit beta [Desulfobulbus propionicus
DSM 2032]
Length = 1357
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL 49
PFF + +DI+ NPL VP RMN+G + EC L
Sbjct: 1106 PFFADG--TTVDIVLNPLGVPSRMNVGQVLECHL 1137
>gi|374851869|dbj|BAL54817.1| DNA-directed RNA polymerase subunit beta, partial [uncultured
candidate division OP1 bacterium]
Length = 822
Score = 42.7 bits (99), Expect = 0.031, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 19/89 (21%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL---RHFDERYKQK-----GSRKLVLSKLYKACKQTA 77
+D+I NPL VP RMN+G +FE L H Y + +L +LYKA K+
Sbjct: 609 VDMILNPLGVPSRMNLGQVFEAHLGWVAHLKGEYMASPVFDGAKEEKILDELYKARKEHG 668
Query: 78 -----NPCKTL------DGQMGNPFKEHV 95
+P + DG+ G PF+ V
Sbjct: 669 LADGDDPQYPMGKVILRDGRTGEPFEHPV 697
>gi|332296125|ref|YP_004438048.1| DNA-directed RNA polymerase subunit beta [Thermodesulfobium
narugense DSM 14796]
gi|332179228|gb|AEE14917.1| DNA-directed RNA polymerase subunit beta [Thermodesulfobium
narugense DSM 14796]
Length = 1100
Score = 42.4 bits (98), Expect = 0.032, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 27/93 (29%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----------------------RHFDERYKQKGSRK 63
+D++ NPL VP RMN+G IFE L FDE + ++ S +
Sbjct: 859 VDVVLNPLGVPSRMNVGQIFEVLLGLAAGVLNNFGKDKNVEYKFEATPFDESFGERASER 918
Query: 64 LVLSKLYKACKQT----ANPCKTL-DGQMGNPF 91
V L KA + N TL DG+ G+PF
Sbjct: 919 FVEEYLEKAREIKPFIGKNGKVTLYDGKTGDPF 951
>gi|445063389|ref|ZP_21375598.1| DNA-directed RNA polymerase subunit beta [Brachyspira hampsonii
30599]
gi|444505220|gb|ELV05773.1| DNA-directed RNA polymerase subunit beta [Brachyspira hampsonii
30599]
Length = 1174
Score = 42.4 bits (98), Expect = 0.033, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQK-------GSRKLVLSKLYKACKQTAN 78
+DI NPL VP RMNIG + E L + K G ++ L + + A AN
Sbjct: 955 VDICLNPLGVPSRMNIGQVIEMLLGWSGHKMGLKYACPVFEGPKEEALREAFVASGMNAN 1014
Query: 79 -PCKTLDGQMGNPFKEHV 95
+ DG+ G PFK V
Sbjct: 1015 GKVRLYDGRTGEPFKNEV 1032
>gi|378972748|ref|YP_005221352.1| DNA-directed RNA polymerase subunit beta [Treponema pallidum subsp.
pertenue str. SamoaD]
gi|378973815|ref|YP_005222421.1| DNA-directed RNA polymerase subunit beta [Treponema pallidum subsp.
pertenue str. Gauthier]
gi|378981724|ref|YP_005230029.1| DNA-directed RNA polymerase subunit beta [Treponema pallidum subsp.
pertenue str. CDC2]
gi|374677071|gb|AEZ57364.1| DNA-directed RNA polymerase subunit beta [Treponema pallidum subsp.
pertenue str. SamoaD]
gi|374678141|gb|AEZ58433.1| DNA-directed RNA polymerase subunit beta [Treponema pallidum subsp.
pertenue str. CDC2]
gi|374679210|gb|AEZ59501.1| DNA-directed RNA polymerase subunit beta [Treponema pallidum subsp.
pertenue str. Gauthier]
Length = 1178
Score = 42.4 bits (98), Expect = 0.036, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+D+ NPL VP RMNIG I E L DE Y+ Q S + + KL +A T
Sbjct: 962 LDVCLNPLGVPSRMNIGQILESELGLAGLRLDEWYESPVFQSPSNEQIGEKLMQAGFPTN 1021
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ DG+ G+ F+ V
Sbjct: 1022 SKVMLRDGRTGDYFQNPVF 1040
>gi|338706217|ref|YP_004672985.1| DNA-directed RNA polymerase subunit beta [Treponema paraluiscuniculi
Cuniculi A]
gi|335344278|gb|AEH40194.1| DNA-directed RNA polymerase subunit beta [Treponema paraluiscuniculi
Cuniculi A]
Length = 1178
Score = 42.4 bits (98), Expect = 0.036, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+D+ NPL VP RMNIG I E L DE Y+ Q S + + KL +A T
Sbjct: 962 LDVCLNPLGVPSRMNIGQILESELGLAGLRLDEWYESPVFQSPSNEQIGEKLMQAGFPTN 1021
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ DG+ G+ F+ V
Sbjct: 1022 SKVMLRDGRTGDYFQNPVF 1040
>gi|15639233|ref|NP_218681.1| DNA-directed RNA polymerase subunit beta [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189025474|ref|YP_001933246.1| DNA-directed RNA polymerase subunit beta [Treponema pallidum subsp.
pallidum SS14]
gi|378974877|ref|YP_005223485.1| DNA-directed RNA polymerase subunit beta [Treponema pallidum subsp.
pallidum DAL-1]
gi|384421779|ref|YP_005631138.1| DNA-directed RNA polymerase subunit beta [Treponema pallidum subsp.
pallidum str. Chicago]
gi|408502135|ref|YP_006869579.1| DNA-directed RNA polymerase subunit beta [Treponema pallidum subsp.
pallidum str. Mexico A]
gi|6094125|sp|O83269.1|RPOB_TREPA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|3322511|gb|AAC65229.1| DNA-directed RNA polymerase, beta subunit (rpoB) [Treponema pallidum
subsp. pallidum str. Nichols]
gi|189018049|gb|ACD70667.1| DNA-directed RNA polymerase, beta subunit [Treponema pallidum subsp.
pallidum SS14]
gi|291059645|gb|ADD72380.1| DNA-directed RNA polymerase, beta subunit [Treponema pallidum subsp.
pallidum str. Chicago]
gi|374680275|gb|AEZ60565.1| DNA-directed RNA polymerase subunit beta [Treponema pallidum subsp.
pallidum DAL-1]
gi|408475498|gb|AFU66263.1| DNA-directed RNA polymerase subunit beta [Treponema pallidum subsp.
pallidum str. Mexico A]
Length = 1178
Score = 42.4 bits (98), Expect = 0.036, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+D+ NPL VP RMNIG I E L DE Y+ Q S + + KL +A T
Sbjct: 962 LDVCLNPLGVPSRMNIGQILESELGLAGLRLDEWYESPVFQSPSNEQIGEKLMQAGFPTN 1021
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ DG+ G+ F+ V
Sbjct: 1022 SKVMLRDGRTGDYFQNPVF 1040
>gi|410479121|ref|YP_006766758.1| DNA-directed RNA polymerase subunit beta [Leptospirillum ferriphilum
ML-04]
gi|124514450|gb|EAY55963.1| DNA-directed RNA polymerase, beta subunit [Leptospirillum rubarum]
gi|406774373|gb|AFS53798.1| DNA-directed RNA polymerase, beta subunit [Leptospirillum ferriphilum
ML-04]
Length = 1718
Score = 42.4 bits (98), Expect = 0.038, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLR--------HFDERYKQKGSRKLVLSKLYKACKQTA 77
+DI+ NPL VP RMN+G I E L HF S + +L KA +
Sbjct: 1521 VDIVLNPLGVPSRMNVGQILETHLGWAGKMLDVHFATPVFDGASEAEIKEQLKKAQLPES 1580
Query: 78 NPCKTLDGQMGNPFKEHV 95
DG+ G PF+ V
Sbjct: 1581 GQTVLYDGKTGEPFERPV 1598
>gi|424867720|ref|ZP_18291500.1| DNA-directed RNA polymerase, beta subunit [Leptospirillum sp. Group
II 'C75']
gi|387221774|gb|EIJ76287.1| DNA-directed RNA polymerase, beta subunit [Leptospirillum sp. Group
II 'C75']
Length = 1724
Score = 42.4 bits (98), Expect = 0.038, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLR--------HFDERYKQKGSRKLVLSKLYKACKQTA 77
+DI+ NPL VP RMN+G I E L HF S + +L KA +
Sbjct: 1527 VDIVLNPLGVPSRMNVGQILETHLGWAGKMLDVHFATPVFDGASEAEIKEQLKKAQLPES 1586
Query: 78 NPCKTLDGQMGNPFKEHV 95
DG+ G PF+ V
Sbjct: 1587 GQTVLYDGKTGEPFERPV 1604
>gi|33865147|ref|NP_896706.1| DNA-directed RNA polymerase subunit beta [Synechococcus sp. WH
8102]
gi|41017924|sp|Q7U8K4.1|RPOB_SYNPX RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|33638831|emb|CAE07128.1| DNA-directed RNA polymerase beta chain [Synechococcus sp. WH 8102]
Length = 1097
Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 23/93 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFE-------------CSLRHFDERYKQKGSRKLVLSKLYKA 72
+DI NPL VP RMN+G +FE + FDE + + S++ + L +A
Sbjct: 854 VDICLNPLGVPSRMNVGQVFELLMGWAASNLDSRVRIVPFDEMHGAEMSQETCEAFLKEA 913
Query: 73 CKQTA--------NPCKTL--DGQMGNPFKEHV 95
KQ +P K + DG+ G PF + V
Sbjct: 914 AKQPGKAWVYNPDDPGKLVLRDGRTGQPFDQPV 946
>gi|429124014|ref|ZP_19184546.1| DNA-directed RNA polymerase subunit beta [Brachyspira hampsonii
30446]
gi|426280175|gb|EKV57193.1| DNA-directed RNA polymerase subunit beta [Brachyspira hampsonii
30446]
Length = 1174
Score = 42.0 bits (97), Expect = 0.041, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQK-------GSRKLVLSKLYKACKQTAN 78
+DI NPL VP RMNIG + E L + K G ++ L + + A AN
Sbjct: 955 VDICLNPLGVPSRMNIGQVIEMLLGWSGHKMGLKYACPVFEGPKEDALREAFVASGMNAN 1014
Query: 79 -PCKTLDGQMGNPFKEHV 95
+ DG+ G PFK V
Sbjct: 1015 GKVRLYDGRTGEPFKNEV 1032
>gi|73697639|gb|AAZ81436.1| RNA polymerase beta subunit [Mycoplasma cavipharyngis]
Length = 668
Score = 42.0 bits (97), Expect = 0.042, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 27/47 (57%), Gaps = 8/47 (17%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQKGSRKLVLSKLYKA 72
IDI+ NPL VP RMNIG + E L +RKLVL +L KA
Sbjct: 470 IDILLNPLGVPSRMNIGQVLEMHL--------GLAARKLVLKELIKA 508
>gi|258647508|ref|ZP_05734977.1| DNA-directed RNA polymerase, beta subunit [Prevotella tannerae ATCC
51259]
gi|260852281|gb|EEX72150.1| DNA-directed RNA polymerase, beta subunit [Prevotella tannerae ATCC
51259]
Length = 1252
Score = 42.0 bits (97), Expect = 0.043, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQKGSRKLVL-SKLYKACK 74
PF R +DI+ NPL VP RMN+G IFE L +R K + + +KL + C+
Sbjct: 1052 PFLADGR--PVDIVLNPLGVPSRMNLGQIFEAILGAAGKRLGVKFATPIFDGAKLDELCE 1109
Query: 75 QTANP-----C--KTLDGQMGNPFKE 93
T C + DG G PF +
Sbjct: 1110 WTDKAGLPRYCAEQLFDGGTGEPFDQ 1135
>gi|281422258|ref|ZP_06253257.1| DNA-directed RNA polymerase, beta subunit [Prevotella copri DSM
18205]
gi|281403763|gb|EFB34443.1| DNA-directed RNA polymerase, beta subunit [Prevotella copri DSM
18205]
Length = 1270
Score = 42.0 bits (97), Expect = 0.044, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 4 EIAHFEDVELLWPFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL 49
++ ED+ PF R +D++ NPL VP RMN+G IFEC L
Sbjct: 1062 KVVRLEDM----PFMADGR--PVDMVLNPLGVPSRMNLGQIFECIL 1101
>gi|42527922|ref|NP_973020.1| DNA-directed RNA polymerase subunit beta [Treponema denticola ATCC
35405]
gi|449111094|ref|ZP_21747693.1| DNA-directed RNA polymerase subunit beta [Treponema denticola ATCC
33521]
gi|449114088|ref|ZP_21750569.1| DNA-directed RNA polymerase subunit beta [Treponema denticola ATCC
35404]
gi|81411477|sp|Q73JJ7.1|RPOB_TREDE RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|41818967|gb|AAS12939.1| DNA-directed RNA polymerase, beta subunit [Treponema denticola ATCC
35405]
gi|448957323|gb|EMB38070.1| DNA-directed RNA polymerase subunit beta [Treponema denticola ATCC
35404]
gi|448959357|gb|EMB40078.1| DNA-directed RNA polymerase subunit beta [Treponema denticola ATCC
33521]
Length = 1167
Score = 42.0 bits (97), Expect = 0.044, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI NPL VP RMNIG I E L +E Y+ + S + + +KL +A T+
Sbjct: 949 LDICLNPLGVPSRMNIGQILESELGLAGLKLNEWYESPVFESPSMEQIEAKLKEAGYPTS 1008
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ K DG G F+ V
Sbjct: 1009 SKVKLRDGLTGRLFENEVF 1027
>gi|422341282|ref|ZP_16422223.1| DNA-directed RNA polymerase subunit beta [Treponema denticola F0402]
gi|449104383|ref|ZP_21741123.1| DNA-directed RNA polymerase subunit beta [Treponema denticola AL-2]
gi|449105558|ref|ZP_21742260.1| DNA-directed RNA polymerase subunit beta [Treponema denticola ASLM]
gi|449108586|ref|ZP_21745228.1| DNA-directed RNA polymerase subunit beta [Treponema denticola ATCC
33520]
gi|449124464|ref|ZP_21760783.1| DNA-directed RNA polymerase subunit beta [Treponema denticola OTK]
gi|451969861|ref|ZP_21923090.1| DNA-directed RNA polymerase subunit beta [Treponema denticola
US-Trep]
gi|325474853|gb|EGC78039.1| DNA-directed RNA polymerase subunit beta [Treponema denticola F0402]
gi|448942795|gb|EMB23689.1| DNA-directed RNA polymerase subunit beta [Treponema denticola OTK]
gi|448961387|gb|EMB42092.1| DNA-directed RNA polymerase subunit beta [Treponema denticola ATCC
33520]
gi|448963402|gb|EMB44080.1| DNA-directed RNA polymerase subunit beta [Treponema denticola AL-2]
gi|448966941|gb|EMB47585.1| DNA-directed RNA polymerase subunit beta [Treponema denticola ASLM]
gi|451701316|gb|EMD55788.1| DNA-directed RNA polymerase subunit beta [Treponema denticola
US-Trep]
Length = 1167
Score = 42.0 bits (97), Expect = 0.044, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI NPL VP RMNIG I E L +E Y+ + S + + +KL +A T+
Sbjct: 949 LDICLNPLGVPSRMNIGQILESELGLAGLKLNEWYESPVFESPSMEQIEAKLKEAGYPTS 1008
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ K DG G F+ V
Sbjct: 1009 SKVKLRDGLTGRLFENEVF 1027
>gi|449116683|ref|ZP_21753129.1| DNA-directed RNA polymerase subunit beta [Treponema denticola H-22]
gi|448952938|gb|EMB33734.1| DNA-directed RNA polymerase subunit beta [Treponema denticola H-22]
Length = 1167
Score = 42.0 bits (97), Expect = 0.045, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI NPL VP RMNIG I E L +E Y+ + S + + +KL +A T+
Sbjct: 949 LDICLNPLGVPSRMNIGQILESELGLAGLKLNEWYESPVFESPSMEQIEAKLKEAGYPTS 1008
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ K DG G F+ V
Sbjct: 1009 SKVKLRDGLTGRLFENEVF 1027
>gi|449119258|ref|ZP_21755654.1| DNA-directed RNA polymerase subunit beta [Treponema denticola H1-T]
gi|449121648|ref|ZP_21757994.1| DNA-directed RNA polymerase subunit beta [Treponema denticola MYR-T]
gi|448949089|gb|EMB29914.1| DNA-directed RNA polymerase subunit beta [Treponema denticola MYR-T]
gi|448950248|gb|EMB31070.1| DNA-directed RNA polymerase subunit beta [Treponema denticola H1-T]
Length = 1167
Score = 42.0 bits (97), Expect = 0.045, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI NPL VP RMNIG I E L +E Y+ + S + + +KL +A T+
Sbjct: 949 LDICLNPLGVPSRMNIGQILESELGLAGLKLNEWYESPVFESPSMEQIEAKLKEAGYPTS 1008
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ K DG G F+ V
Sbjct: 1009 SKVKLRDGLTGRLFENEVF 1027
>gi|449129469|ref|ZP_21765699.1| DNA-directed RNA polymerase subunit beta [Treponema denticola SP37]
gi|448945517|gb|EMB26387.1| DNA-directed RNA polymerase subunit beta [Treponema denticola SP37]
Length = 1167
Score = 42.0 bits (97), Expect = 0.045, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI NPL VP RMNIG I E L +E Y+ + S + + +KL +A T+
Sbjct: 949 LDICLNPLGVPSRMNIGQILESELGLAGLKLNEWYESPVFESPSMEQIEAKLKEAGYPTS 1008
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ K DG G F+ V
Sbjct: 1009 SKVKLRDGLTGRLFENEVF 1027
>gi|449127633|ref|ZP_21763905.1| DNA-directed RNA polymerase subunit beta [Treponema denticola SP33]
gi|448943778|gb|EMB24663.1| DNA-directed RNA polymerase subunit beta [Treponema denticola SP33]
Length = 1167
Score = 42.0 bits (97), Expect = 0.045, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI NPL VP RMNIG I E L +E Y+ + S + + +KL +A T+
Sbjct: 949 LDICLNPLGVPSRMNIGQILESELGLAGLKLNEWYESPVFESPSMEQIEAKLKEAGYPTS 1008
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ K DG G F+ V
Sbjct: 1009 SKVKLRDGLTGRLFENEVF 1027
>gi|194333132|ref|YP_002014992.1| DNA-directed RNA polymerase subunit beta [Prosthecochloris aestuarii
DSM 271]
gi|194310950|gb|ACF45345.1| DNA-directed RNA polymerase, beta subunit [Prosthecochloris aestuarii
DSM 271]
Length = 1301
Score = 42.0 bits (97), Expect = 0.045, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLR--------HFDERYKQKGSRKLVLSKLYKACKQTA 77
+DI+ NPL VP RMNIG ++E SL +F + + V +L KA +
Sbjct: 1105 VDIVLNPLGVPSRMNIGQLYETSLGWAGKSLGVNFKTPIFDGATYEEVQEQLSKAGLPSH 1164
Query: 78 NPCKTLDGQMGNPFKEHV 95
+ DG+ G F + V
Sbjct: 1165 GKVRLYDGRTGEAFDDEV 1182
>gi|148243058|ref|YP_001228215.1| DNA-directed RNA polymerase subunit beta [Synechococcus sp. RCC307]
gi|147851368|emb|CAK28862.1| DNA-directed RNA polymerase beta chain [Synechococcus sp. RCC307]
Length = 932
Score = 42.0 bits (97), Expect = 0.046, Method: Composition-based stats.
Identities = 15/22 (68%), Positives = 18/22 (81%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC 47
IDI+ NPL VP RMN+G +FEC
Sbjct: 853 IDIVLNPLGVPSRMNVGQVFEC 874
>gi|67937436|gb|AAY83285.1| RNA polymerase beta subunit [Mycoplasma imitans]
Length = 670
Score = 42.0 bits (97), Expect = 0.047, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 8/48 (16%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQKGSRKLVLSKLYKAC 73
+DI+ NPL VP RMNIG IFE L + +R+L +L +AC
Sbjct: 472 LDILLNPLGVPSRMNIGQIFELHLGY--------AARELANKRLIEAC 511
>gi|109914393|sp|Q2S1Q5.2|RPOB_SALRD RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
Length = 1287
Score = 42.0 bits (97), Expect = 0.049, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 14/101 (13%)
Query: 1 MLLEIAHFEDVELLWPFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQK- 59
++ +IA ED+ PF + +D++ NPL VP RMN+G I+E L +R K
Sbjct: 1076 VIAKIAPVEDM----PFLDDG--TPVDLVLNPLGVPSRMNLGQIYETLLGWAGDRLGVKY 1129
Query: 60 -------GSRKLVLSKLYKACKQTANPCKTLDGQMGNPFKE 93
S + V +L KA + DG+ G PF E
Sbjct: 1130 ATPIFDGASLEDVGDELEKAGLPRDGKVQLYDGRTGEPFDE 1170
>gi|374855331|dbj|BAL58191.1| DNA-directed RNA polymerase subunit beta [uncultured candidate
division OP1 bacterium]
Length = 1098
Score = 42.0 bits (97), Expect = 0.050, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 19/89 (21%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL---RHFDERYKQK-----GSRKLVLSKLYKACKQTA 77
+D+I NPL VP RMN+G +FE L H Y + +L +LYKA K+
Sbjct: 885 VDMILNPLGVPSRMNLGQVFEAHLGWVAHLKGEYMASPVFDGAKEEKILDELYKARKEHG 944
Query: 78 --------NPCKTL---DGQMGNPFKEHV 95
P + DG+ G PF+ V
Sbjct: 945 LADGDDPQYPTGKVILRDGRTGEPFEHPV 973
>gi|338211323|ref|YP_004655376.1| DNA-directed RNA polymerase subunit beta [Runella slithyformis DSM
19594]
gi|336305142|gb|AEI48244.1| DNA-directed RNA polymerase subunit beta [Runella slithyformis DSM
19594]
Length = 1319
Score = 42.0 bits (97), Expect = 0.051, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQK--------GSRKLVLSKLYKACKQTA 77
+DI+ NPL VP RMNIG I+E L R +K + V+++L +A
Sbjct: 1127 MDIVLNPLGVPSRMNIGQIYETILAWAGRRLGRKYATPIFDGATEDQVVAELNEAGIPAF 1186
Query: 78 NPCKTLDGQMGNPFKEHV 95
DGQ G+ F ++V
Sbjct: 1187 GRTPLYDGQSGDMFDQNV 1204
>gi|83816372|ref|YP_445876.1| DNA-directed RNA polymerase subunit beta [Salinibacter ruber DSM
13855]
gi|83757766|gb|ABC45879.1| DNA-directed RNA polymerase, beta subunit [Salinibacter ruber DSM
13855]
Length = 1335
Score = 42.0 bits (97), Expect = 0.052, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 14/101 (13%)
Query: 1 MLLEIAHFEDVELLWPFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQK- 59
++ +IA ED+ PF + +D++ NPL VP RMN+G I+E L +R K
Sbjct: 1124 VIAKIAPVEDM----PFLDDG--TPVDLVLNPLGVPSRMNLGQIYETLLGWAGDRLGVKY 1177
Query: 60 -------GSRKLVLSKLYKACKQTANPCKTLDGQMGNPFKE 93
S + V +L KA + DG+ G PF E
Sbjct: 1178 ATPIFDGASLEDVGDELEKAGLPRDGKVQLYDGRTGEPFDE 1218
>gi|294507786|ref|YP_003571844.1| DNA-directed RNA polymerase subunit beta [Salinibacter ruber M8]
gi|294344114|emb|CBH24892.1| DNA-directed RNA polymerase beta chain [Salinibacter ruber M8]
Length = 1335
Score = 42.0 bits (97), Expect = 0.052, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 14/101 (13%)
Query: 1 MLLEIAHFEDVELLWPFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQK- 59
++ +IA ED+ PF + +D++ NPL VP RMN+G I+E L +R K
Sbjct: 1124 VIAKIAPVEDM----PFLDDG--TPVDLVLNPLGVPSRMNLGQIYETLLGWAGDRLGVKY 1177
Query: 60 -------GSRKLVLSKLYKACKQTANPCKTLDGQMGNPFKE 93
S + V +L KA + DG+ G PF E
Sbjct: 1178 ATPIFDGASLEDVGDELEKAGLPRDGKVQLYDGRTGEPFDE 1218
>gi|126797587|gb|ABO27325.1| DNA-directed RNA polymerase beta chain [Sinorhizobium arboris]
Length = 224
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQKGSRKLVLSKLYKACKQTANPCKTL 83
+++D++ NPL VP RMN+G I E H G + + + Y+A A +T+
Sbjct: 37 THVDVVLNPLGVPSRMNVGQILET---HLGWACAGMGKKIGAMLEAYQASGDIAPLRQTI 93
Query: 84 D-----GQMGNPFKEH 94
D G G P K++
Sbjct: 94 DDVIGSGPKGEPIKQY 109
>gi|328949283|ref|YP_004366620.1| DNA-directed RNA polymerase subunit beta [Treponema succinifaciens
DSM 2489]
gi|328449607|gb|AEB15323.1| DNA-directed RNA polymerase subunit beta [Treponema succinifaciens
DSM 2489]
Length = 1185
Score = 41.6 bits (96), Expect = 0.057, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 18/79 (22%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRH-------------FDERYKQKGSRKLVLSKLYKA 72
+D+ NPL VP RMNIG I E L F +++ + KLV + L
Sbjct: 962 LDVCLNPLGVPSRMNIGQIMESELGRAGLVLNEWYNSPAFQTPSQEQIAEKLVQAGLSPD 1021
Query: 73 CKQTANPCKTLDGQMGNPF 91
CKQ + DG G PF
Sbjct: 1022 CKQIVH-----DGFTGEPF 1035
>gi|119356080|ref|YP_910724.1| DNA-directed RNA polymerase subunit beta [Chlorobium phaeobacteroides
DSM 266]
gi|158512597|sp|A1BD23.1|RPOB_CHLPD RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|119353429|gb|ABL64300.1| DNA-directed RNA polymerase subunit beta [Chlorobium phaeobacteroides
DSM 266]
Length = 1312
Score = 41.6 bits (96), Expect = 0.059, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI+ NPL VP RMNIG ++E SL + ++K + + V +L KA +
Sbjct: 1116 VDIVLNPLGVPSRMNIGQLYETSLGWAGKELGVKFKTPIFNGATYQEVQQELEKAGLPSH 1175
Query: 78 NPCKTLDGQMGNPFKEHV 95
DG+ G F + V
Sbjct: 1176 GKVSLYDGRTGEQFDDEV 1193
>gi|384108294|ref|ZP_10009189.1| DNA-directed RNA polymerase, beta subunit [Treponema sp. JC4]
gi|383870761|gb|EID86362.1| DNA-directed RNA polymerase, beta subunit [Treponema sp. JC4]
Length = 1180
Score = 41.6 bits (96), Expect = 0.060, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 18/79 (22%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RHFDERYKQKGSRKLVLSKLYKA----- 72
+D+ NPL VP RMNIG I E L + F+ Q +++ + KL +A
Sbjct: 957 LDVCLNPLGVPSRMNIGQIMESELGIAGKYLNQFFEAPVFQSPTQEQIADKLEEAGLPRS 1016
Query: 73 CKQTANPCKTLDGQMGNPF 91
CKQ + GQ G PF
Sbjct: 1017 CKQIVH-----SGQTGEPF 1030
>gi|320536845|ref|ZP_08036840.1| DNA-directed RNA polymerase, beta subunit [Treponema phagedenis
F0421]
gi|320146304|gb|EFW37925.1| DNA-directed RNA polymerase, beta subunit [Treponema phagedenis
F0421]
Length = 1174
Score = 41.6 bits (96), Expect = 0.061, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI NPL VP RMNIG I E L DE Y+ Q + + + KL +A
Sbjct: 958 LDICLNPLGVPSRMNIGQILESELGLAGLRLDEWYESPVFQSPTNEQIEEKLKEAGFPAN 1017
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ DG+ GN F+ V
Sbjct: 1018 SKVMLRDGRTGNYFQNPVF 1036
>gi|386346260|ref|YP_006044509.1| DNA-directed RNA polymerase subunit beta [Spirochaeta thermophila DSM
6578]
gi|339411227|gb|AEJ60792.1| DNA-directed RNA polymerase subunit beta [Spirochaeta thermophila DSM
6578]
Length = 1164
Score = 41.6 bits (96), Expect = 0.061, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLR----HFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI NPL VP RMN+G I E L DE Y + S +++ KL +A
Sbjct: 948 VDICLNPLGVPSRMNLGQILETELGWAAVALDEWYATPVFESASPEMIEEKLREAGLPET 1007
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ DG+ G F + V+
Sbjct: 1008 SKTTLYDGRTGEAFHQPVM 1026
>gi|383784140|ref|YP_005468709.1| DNA-directed RNA polymerase subunit beta [Leptospirillum ferrooxidans
C2-3]
gi|383083052|dbj|BAM06579.1| DNA-directed RNA polymerase, beta subunit [Leptospirillum
ferrooxidans C2-3]
Length = 1719
Score = 41.6 bits (96), Expect = 0.064, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLR--------HFDERYKQKGSRKLVLSKLYKACKQTA 77
+DI+ NPL VP RMN+G I E L HF S + +L K
Sbjct: 1522 VDIVLNPLGVPSRMNVGQILETHLGWAARALNIHFATPVFDGASETDIKEQLRKGGLPET 1581
Query: 78 NPCKTLDGQMGNPFKEHV 95
LDG+ G PF+ V
Sbjct: 1582 GQSVLLDGKTGVPFERPV 1599
>gi|307718200|ref|YP_003873732.1| DNA-directed RNA polymerase subunit beta [Spirochaeta thermophila DSM
6192]
gi|306531925|gb|ADN01459.1| DNA-directed RNA polymerase, beta subunit [Spirochaeta thermophila
DSM 6192]
Length = 1164
Score = 41.6 bits (96), Expect = 0.064, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLR----HFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI NPL VP RMN+G I E L DE Y + S +++ KL +A
Sbjct: 948 VDICLNPLGVPSRMNLGQILETELGWAAVALDEWYATPVFESASPEMIEEKLREAGLPET 1007
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ DG+ G F + V+
Sbjct: 1008 SKTTLYDGRTGEAFHQPVM 1026
>gi|78188335|ref|YP_378673.1| DNA-directed RNA polymerase subunit beta [Chlorobium chlorochromatii
CaD3]
gi|88909128|sp|Q3ATP5.1|RPOB_CHLCH RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|78170534|gb|ABB27630.1| DNA-directed RNA polymerase subunit beta [Chlorobium chlorochromatii
CaD3]
Length = 1300
Score = 41.6 bits (96), Expect = 0.065, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI+ NPL VP RMNIG ++E SL + ++K + + V +L +A T
Sbjct: 1104 VDIVLNPLGVPSRMNIGQLYETSLGWAAKKLGVKFKTPIFNGATYEEVQRELERAGLPTH 1163
Query: 78 NPCKTLDGQMGNPFKEHV 95
DG+ G F + V
Sbjct: 1164 GKVSLFDGRTGERFDDEV 1181
>gi|317123104|ref|YP_004103107.1| DNA-directed RNA polymerase subunit beta [Thermaerobacter
marianensis DSM 12885]
gi|315593084|gb|ADU52380.1| DNA-directed RNA polymerase subunit beta [Thermaerobacter
marianensis DSM 12885]
Length = 1244
Score = 41.6 bits (96), Expect = 0.066, Method: Composition-based stats.
Identities = 16/24 (66%), Positives = 18/24 (75%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL 49
+DI+ NPL VP RMNIG I EC L
Sbjct: 923 VDIVLNPLGVPSRMNIGQILECHL 946
>gi|410582511|ref|ZP_11319617.1| DNA-directed RNA polymerase subunit beta [Thermaerobacter
subterraneus DSM 13965]
gi|410505331|gb|EKP94840.1| DNA-directed RNA polymerase subunit beta [Thermaerobacter
subterraneus DSM 13965]
Length = 1237
Score = 41.6 bits (96), Expect = 0.066, Method: Composition-based stats.
Identities = 16/24 (66%), Positives = 18/24 (75%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL 49
+DI+ NPL VP RMNIG I EC L
Sbjct: 916 VDIVLNPLGVPSRMNIGQILECHL 939
>gi|78358037|ref|YP_389486.1| DNA-directed RNA polymerase subunit beta [Desulfovibrio alaskensis
G20]
gi|88909135|sp|Q30X05.1|RPOB_DESDG RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|78220442|gb|ABB39791.1| DNA-directed RNA polymerase, beta subunit [Desulfovibrio alaskensis
G20]
Length = 1375
Score = 41.2 bits (95), Expect = 0.071, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQKGSRKLVL 66
PFF R +DI+ NPL VP RMNIG I E H K+ G RKL L
Sbjct: 1103 PFFADGR--PVDIVLNPLGVPSRMNIGQIMET---HLGWAAKEMG-RKLAL 1147
>gi|397692529|ref|YP_006530410.1| DNA-directed RNA polymerase subunit beta' [Candidatus Mycoplasma
haemolamae str. Purdue]
gi|397329259|gb|AFO52265.1| DNA-directed RNA polymerase subunit beta' [Candidatus Mycoplasma
haemolamae str. Purdue]
Length = 2653
Score = 41.2 bits (95), Expect = 0.071, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%), Gaps = 8/44 (18%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQKGSRKLVLSKL 69
IDI+ NPL VP RMNIG I E L + SRKLV K+
Sbjct: 1048 IDILLNPLGVPSRMNIGQILETYLAY--------SSRKLVFKKV 1083
>gi|303247797|ref|ZP_07334066.1| DNA-directed RNA polymerase, beta subunit [Desulfovibrio
fructosovorans JJ]
gi|302490881|gb|EFL50780.1| DNA-directed RNA polymerase, beta subunit [Desulfovibrio
fructosovorans JJ]
Length = 1368
Score = 41.2 bits (95), Expect = 0.077, Method: Composition-based stats.
Identities = 19/34 (55%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL 49
PFF + R +DI+ NPL VP RMNIG I E L
Sbjct: 1104 PFFANGR--PVDIVLNPLGVPSRMNIGQIMETHL 1135
>gi|89515248|gb|ABD75453.1| DNA-directed RNA polymerase beta chain [Sinorhizobium arboris LMG
14919]
Length = 224
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQKGSRKLVLSKLYKACKQTANPCKTL 83
+++D++ NPL VP RMN+G I E H G + + Y+A A +T+
Sbjct: 37 THVDVVLNPLGVPSRMNVGQILET---HLGWACAGMGKKIGAMLDAYQASGDIAPLRQTI 93
Query: 84 D-----GQMGNPFKEH 94
D G G P K++
Sbjct: 94 DDVIGSGPKGEPIKQY 109
>gi|1369760|gb|AAC37118.1| RNA polymerase beta subunit [Borrelia burgdorferi]
Length = 1154
Score = 41.2 bits (95), Expect = 0.077, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI NPL VP RMNIG + E L ++ E Y + + + + KL A
Sbjct: 943 LDICLNPLGVPSRMNIGQLMESQLGLAGKYLGESYNVPVFESATNEQIQEKLKTAGFNPT 1002
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ DG G PF+ V+
Sbjct: 1003 SKEILYDGYTGEPFENEVM 1021
>gi|397677835|ref|YP_006519371.1| DNA-directed RNA polymerase subunit beta' [Mycoplasma wenyonii str.
Massachusetts]
gi|395456100|gb|AFN65042.1| DNA-directed RNA polymerase subunit beta' [Mycoplasma wenyonii str.
Massachusetts]
Length = 2648
Score = 41.2 bits (95), Expect = 0.077, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 8/47 (17%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQKGSRKLVLSKLYKA 72
+DI+ NPL VP RMNIG I E Y +RKLV +KL A
Sbjct: 1049 VDILLNPLGVPSRMNIGQIL--------ESYLAFSARKLVFNKLLTA 1087
>gi|221217800|ref|ZP_03589268.1| DNA-directed RNA polymerase, beta subunit [Borrelia burgdorferi 72a]
gi|224533726|ref|ZP_03674314.1| DNA-directed RNA polymerase, beta subunit [Borrelia burgdorferi
CA-11.2a]
gi|225549089|ref|ZP_03770064.1| DNA-directed RNA polymerase, beta subunit [Borrelia burgdorferi 94a]
gi|225550207|ref|ZP_03771167.1| DNA-directed RNA polymerase, beta subunit [Borrelia burgdorferi 118a]
gi|3915861|sp|Q59191.2|RPOB_BORBU RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|221192477|gb|EEE18696.1| DNA-directed RNA polymerase, beta subunit [Borrelia burgdorferi 72a]
gi|224513019|gb|EEF83382.1| DNA-directed RNA polymerase, beta subunit [Borrelia burgdorferi
CA-11.2a]
gi|225369319|gb|EEG98772.1| DNA-directed RNA polymerase, beta subunit [Borrelia burgdorferi 118a]
gi|225370315|gb|EEG99753.1| DNA-directed RNA polymerase, beta subunit [Borrelia burgdorferi 94a]
Length = 1155
Score = 41.2 bits (95), Expect = 0.078, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI NPL VP RMNIG + E L ++ E Y + + + + KL A
Sbjct: 943 LDICLNPLGVPSRMNIGQLMESQLGLAGKYLGESYNVPVFESATNEQIQEKLKTAGFNPT 1002
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ DG G PF+ V+
Sbjct: 1003 SKEILYDGYTGEPFENEVM 1021
>gi|387826040|ref|YP_005805493.1| DNA-directed RNA polymerase subunit beta [Borrelia burgdorferi JD1]
gi|312148478|gb|ADQ31137.1| DNA-directed RNA polymerase, beta subunit [Borrelia burgdorferi JD1]
Length = 1155
Score = 41.2 bits (95), Expect = 0.078, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI NPL VP RMNIG + E L ++ E Y + + + + KL A
Sbjct: 943 LDICLNPLGVPSRMNIGQLMESQLGLAGKYLGESYNVPVFESATNEQIQEKLKTAGFNPT 1002
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ DG G PF+ V+
Sbjct: 1003 SKEILYDGYTGEPFENEVM 1021
>gi|157429505|gb|ABV56819.1| RNA polymerase beta subunit [Streptococcus marimammalium]
Length = 219
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYKQKGSRKLVLSKLYKACKQTA--NP 79
+DI+ NPL VP RMNIG + E L R D L++ K+ +
Sbjct: 133 VDIMLNPLGVPSRMNIGQVMELHLGMAARSLDVHMATPVFDGATAEDLWETVKEAGMDSD 192
Query: 80 CKTL--DGQMGNPFKEHV 95
KT+ DG+ G PF V
Sbjct: 193 AKTVLYDGRTGEPFDNRV 210
>gi|223888904|ref|ZP_03623495.1| DNA-directed RNA polymerase, beta subunit [Borrelia burgdorferi 64b]
gi|223885720|gb|EEF56819.1| DNA-directed RNA polymerase, beta subunit [Borrelia burgdorferi 64b]
Length = 1155
Score = 41.2 bits (95), Expect = 0.078, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI NPL VP RMNIG + E L ++ E Y + + + + KL A
Sbjct: 943 LDICLNPLGVPSRMNIGQLMESQLGLAGKYLGESYNVPVFESATNEQIQEKLKTAGFNPT 1002
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ DG G PF+ V+
Sbjct: 1003 SKEILYDGYTGEPFENEVM 1021
>gi|225552230|ref|ZP_03773170.1| DNA-directed RNA polymerase, beta subunit [Borrelia sp. SV1]
gi|225371228|gb|EEH00658.1| DNA-directed RNA polymerase, beta subunit [Borrelia sp. SV1]
Length = 1155
Score = 41.2 bits (95), Expect = 0.078, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI NPL VP RMNIG + E L ++ E Y + + + + KL A
Sbjct: 943 LDICLNPLGVPSRMNIGQLMESQLGLAGKYLGESYNVPVFESATNEQIQEKLKTAGFNPT 1002
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ DG G PF+ V+
Sbjct: 1003 SKEILYDGYTGEPFENEVM 1021
>gi|226320546|ref|ZP_03796107.1| DNA-directed RNA polymerase, beta subunit [Borrelia burgdorferi
29805]
gi|226234044|gb|EEH32764.1| DNA-directed RNA polymerase, beta subunit [Borrelia burgdorferi
29805]
Length = 949
Score = 41.2 bits (95), Expect = 0.078, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI NPL VP RMNIG + E L ++ E Y + + + + KL A
Sbjct: 737 LDICLNPLGVPSRMNIGQLMESQLGLAGKYLGESYNVPVFESATNEQIQEKLKTAGFNPT 796
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ DG G PF+ V+
Sbjct: 797 SKEILYDGYTGEPFENEVM 815
>gi|195941261|ref|ZP_03086643.1| DNA-directed RNA polymerase subunit beta [Borrelia burgdorferi 80a]
Length = 1155
Score = 41.2 bits (95), Expect = 0.078, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI NPL VP RMNIG + E L ++ E Y + + + + KL A
Sbjct: 943 LDICLNPLGVPSRMNIGQLMESQLGLAGKYLGESYNVPVFESATNEQIQEKLKTAGFNPT 1002
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ DG G PF+ V+
Sbjct: 1003 SKEILYDGYTGEPFENEVM 1021
>gi|218249452|ref|YP_002374906.1| DNA-directed RNA polymerase, beta subunit [Borrelia burgdorferi ZS7]
gi|226321704|ref|ZP_03797230.1| DNA-directed RNA polymerase, beta subunit [Borrelia burgdorferi
Bol26]
gi|387827302|ref|YP_005806584.1| DNA-directed RNA polymerase subunit beta [Borrelia burgdorferi N40]
gi|226699372|sp|B7J1W1.1|RPOB_BORBZ RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|218164640|gb|ACK74701.1| DNA-directed RNA polymerase, beta subunit [Borrelia burgdorferi ZS7]
gi|226232893|gb|EEH31646.1| DNA-directed RNA polymerase, beta subunit [Borrelia burgdorferi
Bol26]
gi|312149116|gb|ADQ29187.1| DNA-directed RNA polymerase, beta subunit [Borrelia burgdorferi N40]
Length = 1155
Score = 41.2 bits (95), Expect = 0.078, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI NPL VP RMNIG + E L ++ E Y + + + + KL A
Sbjct: 943 LDICLNPLGVPSRMNIGQLMESQLGLAGKYLGESYNVPVFESATNEQIQEKLKTAGFNPT 1002
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ DG G PF+ V+
Sbjct: 1003 SKEILYDGYTGEPFENEVM 1021
>gi|216264883|ref|ZP_03436875.1| DNA-directed RNA polymerase, beta subunit [Borrelia burgdorferi 156a]
gi|215981356|gb|EEC22163.1| DNA-directed RNA polymerase, beta subunit [Borrelia burgdorferi 156a]
Length = 1155
Score = 41.2 bits (95), Expect = 0.078, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI NPL VP RMNIG + E L ++ E Y + + + + KL A
Sbjct: 943 LDICLNPLGVPSRMNIGQLMESQLGLAGKYLGESYNVPVFESATNEQIQEKLKTAGFNPT 1002
Query: 78 NPCKTLDGQMGNPFKEHVL 96
+ DG G PF+ V+
Sbjct: 1003 SKEILYDGYTGEPFENEVM 1021
>gi|161331463|gb|ABX60649.1| RpoB [Bacillus cereus]
Length = 230
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 16/82 (19%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQ--------KGSRKLVLSKLYKACKQT- 76
IDI+ NPL VP RMNIG + E L RY G+R+ ++ ++
Sbjct: 142 IDIMLNPLGVPSRMNIGQVLELHL-GMAARYLGIHIATPVFDGARE---EDVWGTIEEAG 197
Query: 77 -ANPCKTL--DGQMGNPFKEHV 95
AN KT+ DG+ G PF V
Sbjct: 198 MANDAKTILYDGRTGEPFDNRV 219
>gi|161331447|gb|ABX60641.1| RpoB [Bacillus thuringiensis]
Length = 231
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 16/82 (19%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQ--------KGSRKLVLSKLYKACKQT- 76
IDI+ NPL VP RMNIG + E L RY G+R+ ++ ++
Sbjct: 143 IDIMLNPLGVPSRMNIGQVLELHL-GMAARYLGIHIATPVFDGARE---EDVWGTIEEAG 198
Query: 77 -ANPCKTL--DGQMGNPFKEHV 95
AN KT+ DG+ G PF V
Sbjct: 199 MANDAKTILYDGRTGEPFDNRV 220
>gi|145342301|gb|ABP64847.1| RpoB [Bacillus cereus]
gi|145342305|gb|ABP64849.1| RpoB [Bacillus cereus]
gi|145342333|gb|ABP64863.1| RpoB [Bacillus weihenstephanensis]
gi|145342361|gb|ABP64877.1| RpoB [Bacillus weihenstephanensis]
gi|145342365|gb|ABP64879.1| RpoB [Bacillus cereus]
gi|145342375|gb|ABP64884.1| RpoB [Bacillus weihenstephanensis]
gi|161331457|gb|ABX60646.1| RpoB [Bacillus cereus]
gi|161331461|gb|ABX60648.1| RpoB [Bacillus sp. FSL_h8481]
gi|161331469|gb|ABX60652.1| RpoB [Bacillus weihenstephanensis]
gi|161331473|gb|ABX60654.1| RpoB [Bacillus weihenstephanensis]
gi|161331513|gb|ABX60674.1| RpoB [Bacillus sp. FSL_h8546]
Length = 232
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 16/82 (19%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQ--------KGSRKLVLSKLYKACKQT- 76
IDI+ NPL VP RMNIG + E L RY G+R+ ++ ++
Sbjct: 144 IDIMLNPLGVPSRMNIGQVLELHL-GMAARYLGIHIATPVFDGARE---EDVWGTIEEAG 199
Query: 77 -ANPCKTL--DGQMGNPFKEHV 95
AN KT+ DG+ G PF V
Sbjct: 200 MANDAKTILYDGRTGEPFDNRV 221
>gi|261880895|ref|ZP_06007322.1| DNA-directed RNA polymerase subunit beta [Prevotella bergensis DSM
17361]
gi|270332403|gb|EFA43189.1| DNA-directed RNA polymerase subunit beta [Prevotella bergensis DSM
17361]
Length = 1269
Score = 41.2 bits (95), Expect = 0.082, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL----RHFDERYKQKGSRKLVLSKLYK 71
PF R +D++ NP+ VP RMN+G IFE L R +++ L L +
Sbjct: 1069 PFLEDGR--PVDLVLNPMGVPSRMNLGQIFEAILGAAGRKLGKKFATPIFDGAKLDDLRE 1126
Query: 72 ACKQTANP--CKT--LDGQMGNPFKE 93
++ P C T DG+ G PF +
Sbjct: 1127 WTEKAGLPNLCSTTVYDGETGEPFDQ 1152
>gi|140084098|gb|ABO84898.1| RpoB [Bacillus weihenstephanensis]
Length = 231
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 16/82 (19%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQ--------KGSRKLVLSKLYKACKQT- 76
IDI+ NPL VP RMNIG + E L RY G+R+ ++ ++
Sbjct: 144 IDIMLNPLGVPSRMNIGQVLELHL-GMAARYLGIHIATPVFDGARE---EDVWGTIEEAG 199
Query: 77 -ANPCKTL--DGQMGNPFKEHV 95
AN KT+ DG+ G PF V
Sbjct: 200 MANDAKTILYDGRTGEPFDNRV 221
>gi|161331501|gb|ABX60668.1| RpoB [Bacillus sp. FSL_h8534]
Length = 215
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 16/82 (19%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQ--------KGSRKLVLSKLYKACKQT- 76
IDI+ NPL VP RMNIG + E L RY G+R+ ++ ++
Sbjct: 136 IDIMLNPLGVPSRMNIGQVLELHL-GMAARYLGIHIATPVFDGARE---EDVWGTIEEAG 191
Query: 77 -ANPCKTL--DGQMGNPFKEHV 95
AN KT+ DG+ G PF V
Sbjct: 192 MANDAKTILYDGRTGEPFDNRV 213
>gi|110597684|ref|ZP_01385969.1| DNA-directed RNA polymerase, beta subunit [Chlorobium ferrooxidans
DSM 13031]
gi|110340804|gb|EAT59281.1| DNA-directed RNA polymerase, beta subunit [Chlorobium ferrooxidans
DSM 13031]
Length = 1300
Score = 41.2 bits (95), Expect = 0.089, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI+ NPL VP RMNIG ++E SL + ++K + + V +L KA
Sbjct: 1104 VDIVLNPLGVPSRMNIGQLYETSLGWAAKKLGVKFKTPIFNGATYEEVQQQLEKAGLPAH 1163
Query: 78 NPCKTLDGQMGNPFKEHV 95
DG+ G F + V
Sbjct: 1164 GKVSLFDGRTGERFDDEV 1181
>gi|241068592|ref|XP_002408479.1| RNA polymerase II second largest subunit (RPB2), putative [Ixodes
scapularis]
gi|215492467|gb|EEC02108.1| RNA polymerase II second largest subunit (RPB2), putative, partial
[Ixodes scapularis]
Length = 194
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLR---HFDERYKQKGSRKLVLSKLYKACKQTANPCKT 82
IDI+ NPL +P RMNIG I E L HF + V L A + + K
Sbjct: 48 IDIVLNPLGLPSRMNIGQILETHLGKGVHFATPVFDGAKVQDVKDMLKLAGQDPSGQVKL 107
Query: 83 LDGQMGNPFKEHV 95
+DG+ G F V
Sbjct: 108 IDGRTGEYFDRLV 120
>gi|325990002|ref|YP_004249701.1| DNA-directed RNA polymerase subunit beta [Mycoplasma suis KI3806]
gi|323575087|emb|CBZ40748.1| DNA-directed RNA polymerase subunit beta and beta\' [Mycoplasma suis
KI3806]
Length = 2643
Score = 40.8 bits (94), Expect = 0.097, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQKGSRKLVLSKLYKA-CKQTANPCKTL 83
+DI+ NPL VP RMNIG I E Y +RKLV K+ +A + C TL
Sbjct: 1056 VDILLNPLGVPSRMNIGQIL--------ESYLAFSARKLVFKKILEAFFDSSLESCDTL 1106
>gi|325973547|ref|YP_004250611.1| DNA-directed RNA polymerase subunit beta' [Mycoplasma suis str.
Illinois]
gi|323652149|gb|ADX98231.1| DNA-directed RNA polymerase, beta' subunit [Mycoplasma suis str.
Illinois]
Length = 2643
Score = 40.8 bits (94), Expect = 0.097, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQKGSRKLVLSKLYKA-CKQTANPCKTL 83
+DI+ NPL VP RMNIG I E Y +RKLV K+ +A + C TL
Sbjct: 1056 VDILLNPLGVPSRMNIGQIL--------ESYLAFSARKLVFKKILEAFFDSSLESCDTL 1106
>gi|81171093|gb|ABB58773.1| RNA polymerase beta subunit [Mycoplasma feliminutum]
Length = 637
Score = 40.8 bits (94), Expect = 0.097, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQKGSRKL--------VLSKLYKACKQTA 77
IDI+ +PL VP RMNIG I E L H ++ K + + +L + +A T
Sbjct: 516 IDIMLSPLGVPKRMNIGQILEIHLGHAAKKLGVKVATPVFEGVNDQDLLDIMNEANIDTD 575
Query: 78 NPCKTLDGQMGNPFKEHV 95
DG+ G FKE +
Sbjct: 576 GKAILYDGRTGEAFKERI 593
>gi|398348448|ref|ZP_10533151.1| DNA-directed RNA polymerase subunit beta [Leptospira broomii str.
5399]
Length = 1226
Score = 40.8 bits (94), Expect = 0.098, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDER----YKQKGSRKLVLSKLYKACKQTANPCK 81
+DI+ NPL VP RMN+G IFE L R ++ + + K CK+ P
Sbjct: 1003 MDIVLNPLGVPSRMNLGQIFETQLGLAASRLGINFETPVFDGATEADVEKYCKEANLPLS 1062
Query: 82 T----LDGQMGNPFKEHVL 96
+ DG+ G PF V
Sbjct: 1063 SKFRLYDGRTGLPFMNEVF 1081
>gi|398343410|ref|ZP_10528113.1| DNA-directed RNA polymerase subunit beta [Leptospira inadai serovar
Lyme str. 10]
Length = 1226
Score = 40.8 bits (94), Expect = 0.098, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDER----YKQKGSRKLVLSKLYKACKQTANPCK 81
+DI+ NPL VP RMN+G IFE L R ++ + + K CK+ P
Sbjct: 1003 MDIVLNPLGVPSRMNLGQIFETQLGLAASRLGINFETPVFDGATEADVEKYCKEANLPLS 1062
Query: 82 T----LDGQMGNPFKEHVL 96
+ DG+ G PF V
Sbjct: 1063 SKFRLYDGRTGLPFMNEVF 1081
>gi|148556370|ref|YP_001263952.1| DNA-directed RNA polymerase subunit beta [Sphingomonas wittichii RW1]
gi|182676573|sp|A5VBZ8.1|RPOB_SPHWW RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|148501560|gb|ABQ69814.1| DNA-directed RNA polymerase, beta subunit [Sphingomonas wittichii
RW1]
Length = 1455
Score = 40.8 bits (94), Expect = 0.100, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 11/65 (16%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQKGSRKLVLSKLYKACKQTANPCKTLDG 85
+DI+ NPL VP RMN+G IFE L + +G K V S L +A ++ ANP D
Sbjct: 1186 VDIVLNPLGVPSRMNVGQIFETHL-----GWAARGLGKQVTSAL-EAWRE-ANP----DA 1234
Query: 86 QMGNP 90
Q P
Sbjct: 1235 QAATP 1239
>gi|329890196|ref|ZP_08268539.1| DNA-directed RNA polymerase, beta subunit [Brevundimonas diminuta
ATCC 11568]
gi|328845497|gb|EGF95061.1| DNA-directed RNA polymerase, beta subunit [Brevundimonas diminuta
ATCC 11568]
Length = 1371
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 11/57 (19%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSL-----------RHFDERYKQKGSRKLVLSKL 69
+++DI+ NPL VP RMNIG IFE L + E++ G R ++S+L
Sbjct: 1125 THVDIVLNPLGVPSRMNIGQIFETHLGWAAAGLGKQIKGLLEQWMDGGMRDALVSRL 1181
>gi|83319487|ref|YP_424065.1| DNA-directed RNA polymerase subunit beta [Mycoplasma capricolum
subsp. capricolum ATCC 27343]
gi|109904235|sp|Q2ST48.1|RPOB_MYCCT RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|83283373|gb|ABC01305.1| DNA-directed RNA polymerase, beta subunit [Mycoplasma capricolum
subsp. capricolum ATCC 27343]
Length = 1287
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQK-------GSRKLVLSKLYKACKQTAN 78
+DII NP VP RMNIG I E L ++ QK G + L ++ T
Sbjct: 1029 VDIILNPQGVPSRMNIGQILEIHLGMAAKKLNQKVITPVFEGLNEKELEEIMAEAGMTNY 1088
Query: 79 PCKTL-DGQMGNPFKEHV 95
TL DGQ G PF + +
Sbjct: 1089 GKVTLIDGQTGEPFDKPI 1106
>gi|42561522|ref|NP_975973.1| DNA-directed RNA polymerase subunit beta [Mycoplasma mycoides subsp.
mycoides SC str. PG1]
gi|81400331|sp|Q6MRX6.1|RPOB_MYCMS RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|42493021|emb|CAE77615.1| DNA-directed RNA polymerase beta chain [Mycoplasma mycoides subsp.
mycoides SC str. PG1]
Length = 1291
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQK-------GSRKLVLSKLYKACKQTAN 78
+DII NP VP RMNIG I E L ++ QK G + L ++ T
Sbjct: 1029 VDIILNPQGVPSRMNIGQILEIHLGMAAKKLNQKVITPAFEGLNEKELEEIMAEAGMTNY 1088
Query: 79 PCKTL-DGQMGNPFKEHV 95
TL DGQ G PF + +
Sbjct: 1089 GKVTLIDGQTGEPFDKPI 1106
>gi|331703831|ref|YP_004400518.1| DNA directed RNA polymerase subunit beta [Mycoplasma mycoides subsp.
capri LC str. 95010]
gi|328802386|emb|CBW54541.1| DNA directed RNA polymerase beta chain [Mycoplasma mycoides subsp.
capri LC str. 95010]
Length = 1291
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQK-------GSRKLVLSKLYKACKQTAN 78
+DII NP VP RMNIG I E L ++ QK G + L ++ T
Sbjct: 1029 VDIILNPQGVPSRMNIGQILEIHLGMAAKKLNQKVITPVFEGLNEKELEEIMAEAGMTNY 1088
Query: 79 PCKTL-DGQMGNPFKEHV 95
TL DGQ G PF + +
Sbjct: 1089 GKVTLIDGQTGEPFDKPI 1106
>gi|301321056|gb|ADK69699.1| DNA-directed RNA polymerase, beta subunit [Mycoplasma mycoides subsp.
mycoides SC str. Gladysdale]
Length = 1291
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQK-------GSRKLVLSKLYKACKQTAN 78
+DII NP VP RMNIG I E L ++ QK G + L ++ T
Sbjct: 1029 VDIILNPQGVPSRMNIGQILEIHLGMAAKKLNQKVITPVFEGLNEKELEEIMAEAGMTNY 1088
Query: 79 PCKTL-DGQMGNPFKEHV 95
TL DGQ G PF + +
Sbjct: 1089 GKVTLIDGQTGEPFDKPI 1106
>gi|256384358|gb|ACU78928.1| DNA-directed RNA polymerase, beta subunit [Mycoplasma mycoides subsp.
capri str. GM12]
gi|256385190|gb|ACU79759.1| DNA-directed RNA polymerase, beta subunit [Mycoplasma mycoides subsp.
capri str. GM12]
gi|296455347|gb|ADH21582.1| DNA-directed RNA polymerase, beta subunit [synthetic Mycoplasma
mycoides JCVI-syn1.0]
Length = 1291
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQK-------GSRKLVLSKLYKACKQTAN 78
+DII NP VP RMNIG I E L ++ QK G + L ++ T
Sbjct: 1029 VDIILNPQGVPSRMNIGQILEIHLGMAAKKLNQKVITPVFEGLNEKELEEIMAEAGMTNY 1088
Query: 79 PCKTL-DGQMGNPFKEHV 95
TL DGQ G PF + +
Sbjct: 1089 GKVTLIDGQTGEPFDKPI 1106
>gi|80978863|gb|ABB54680.1| RNA polymerase beta subunit [Mycoplasma capricolum subsp.
capricolum ATCC 27343]
gi|80978865|gb|ABB54681.1| RNA polymerase beta subunit [Mycoplasma capricolum subsp.
capricolum]
Length = 596
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQK-------GSRKLVLSKLYKACKQTAN 78
+DII NP VP RMNIG I E L ++ QK G + L ++ T
Sbjct: 475 VDIILNPQGVPSRMNIGQILEIHLGMAAKKLNQKVITPVFEGLNEKELEEIMAEAGMTNY 534
Query: 79 PCKTL-DGQMGNPFKEHV 95
TL DGQ G PF + +
Sbjct: 535 GKVTLIDGQTGEPFDKPI 552
>gi|73697677|gb|AAZ81455.1| RNA polymerase beta subunit [Mycoplasma sp. ATCC 27369]
Length = 595
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQK-------GSRKLVLSKLYKACKQTAN 78
+DII NP VP RMNIG I E L ++ QK G + L ++ T
Sbjct: 474 VDIILNPQGVPSRMNIGQILEIHLGMAAKKLNQKVITPVFEGLNEKELEEIMAEAGMTNY 533
Query: 79 PCKTL-DGQMGNPFKEHV 95
TL DGQ G PF + +
Sbjct: 534 GKVTLIDGQTGEPFDKPI 551
>gi|78187804|ref|YP_375847.1| DNA-directed RNA polymerase subunit beta [Chlorobium luteolum DSM
273]
gi|109904624|sp|Q3B1H7.1|RPOB_PELLD RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|78167706|gb|ABB24804.1| DNA-directed RNA polymerase subunit beta [Chlorobium luteolum DSM
273]
Length = 1301
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI+ NPL VP RMNIG ++E SL + ++K + + V ++L +A
Sbjct: 1105 VDIVLNPLGVPSRMNIGQLYETSLGWAAKKLGVKFKTPIFNGATYEEVQAELERAGLPMH 1164
Query: 78 NPCKTLDGQMGNPFKEHV 95
+ DG+ G F + V
Sbjct: 1165 GKVRLYDGRTGEQFDDEV 1182
>gi|456062379|ref|YP_007501349.1| DNA-directed RNA polymerase, beta subunit [beta proteobacterium CB]
gi|455439676|gb|AGG32614.1| DNA-directed RNA polymerase, beta subunit [beta proteobacterium CB]
Length = 1366
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 18/83 (21%)
Query: 4 EIAHFEDVELLWPFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RHFDER 55
+IA ED+ PF R +DI+ NPL VP RMN+G I E L + DE
Sbjct: 1095 KIAPAEDM----PFMADGR--PVDIVLNPLGVPSRMNVGQILETHLGWAAQGIGKRIDEM 1148
Query: 56 YKQKGSRKLVLSKLYKACKQTAN 78
+Q+ + ++L K KQ N
Sbjct: 1149 VRQQAKQ----AELRKFMKQLYN 1167
>gi|359687120|ref|ZP_09257121.1| DNA-directed RNA polymerase subunit beta [Leptospira licerasiae
serovar Varillal str. MMD0835]
gi|418750600|ref|ZP_13306886.1| DNA-directed RNA polymerase, beta subunit [Leptospira licerasiae str.
MMD4847]
gi|418756278|ref|ZP_13312466.1| DNA-directed RNA polymerase, beta subunit [Leptospira licerasiae
serovar Varillal str. VAR 010]
gi|384115949|gb|EIE02206.1| DNA-directed RNA polymerase, beta subunit [Leptospira licerasiae
serovar Varillal str. VAR 010]
gi|404273203|gb|EJZ40523.1| DNA-directed RNA polymerase, beta subunit [Leptospira licerasiae str.
MMD4847]
Length = 1226
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYKQKGSRKLVLSKLYKACKQTANPC- 80
+DI+ NPL VP RMN+G IFE L ++ + + K CK+ P
Sbjct: 1003 MDIVLNPLGVPSRMNLGQIFETQLGLAASKLGINFETPVFDGATEADVEKYCKEANLPLS 1062
Query: 81 ---KTLDGQMGNPFKEHVL 96
K DG+ G PF V
Sbjct: 1063 SKFKLYDGRTGLPFMNEVF 1081
>gi|78043606|ref|YP_361127.1| DNA-directed RNA polymerase subunit beta [Carboxydothermus
hydrogenoformans Z-2901]
gi|88909127|sp|Q3A9Q7.1|RPOB_CARHZ RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|77995721|gb|ABB14620.1| DNA-directed RNA polymerase, beta subunit [Carboxydothermus
hydrogenoformans Z-2901]
Length = 1132
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 14/81 (17%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQKG-----------SRKLVLSKLYKACK 74
++I+ NPL VP RMNIG I EC H K G + + + L KA
Sbjct: 880 VEIVLNPLGVPSRMNIGQILEC---HLGWAAKALGINVATPIFNGATEEDIFEALRKAGL 936
Query: 75 QTANPCKTLDGQMGNPFKEHV 95
+ DG+ G PF V
Sbjct: 937 PEDGKIEVRDGRTGEPFDSRV 957
>gi|392396399|ref|YP_006433000.1| DNA-directed RNA polymerase subunit beta [Flexibacter litoralis DSM
6794]
gi|390527477|gb|AFM03207.1| DNA-directed RNA polymerase subunit beta [Flexibacter litoralis DSM
6794]
Length = 1287
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQK--------GSRKLVLS 67
PF R +DI+ NPL VP RMN+G I+E L H R K + V +
Sbjct: 1087 PFLADGR--PVDIVLNPLGVPSRMNLGQIYETILGHAGLRMGTKYATPIFDGATEAEVEA 1144
Query: 68 KLYKACKQTANPCKTLDGQMGNPFKEHV 95
++ KA + DG+ G F++ V
Sbjct: 1145 EIEKAGLPRWCKMEVFDGRTGVKFEQTV 1172
>gi|431795663|ref|YP_007222567.1| DNA-directed RNA polymerase subunit beta [Echinicola vietnamensis DSM
17526]
gi|430786428|gb|AGA76557.1| DNA-directed RNA polymerase, beta subunit [Echinicola vietnamensis
DSM 17526]
Length = 1291
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQK 59
+DI+ NPL VP RMNIG IFE L E+ +K
Sbjct: 1099 MDIVLNPLGVPSRMNIGQIFETVLAWAGEKMNKK 1132
>gi|21672996|ref|NP_661061.1| DNA-directed RNA polymerase subunit beta [Chlorobium tepidum TLS]
gi|41017753|sp|Q8KG15.1|RPOB_CHLTE RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|21646059|gb|AAM71403.1| DNA-directed RNA polymerase, beta subunit [Chlorobium tepidum TLS]
Length = 1303
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL----RHFDERYK----QKGSRKLVLSKLYKACKQTA 77
+DI+ NPL VP RMNIG ++E SL + ++K + V L KA
Sbjct: 1107 VDIVLNPLGVPSRMNIGQLYETSLGWAGKKLGVKFKTPIFSGATYTEVQEYLEKAGLPGH 1166
Query: 78 NPCKTLDGQMGNPFKEHV 95
K DG+ G F + V
Sbjct: 1167 GKVKLFDGRTGEQFHDEV 1184
>gi|166034423|gb|ABY78988.1| DNA-directed RNA polymerase beta chain [Rhizobium sp. ITTG S7]
Length = 214
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 24 SNIDIIFNPLEVPPRMNIGHIFECSLRHFDERYKQKGSRKLVLSKLYKACKQTANPCKTL 83
+++DI+ NPL VP RMN+G I E H G + L + YKA KT+
Sbjct: 27 THVDIVLNPLGVPSRMNVGQILET---HLGWACAGMGRQIGELIEAYKASGNIEPLRKTI 83
Query: 84 DGQMGNPFK 92
D +G+ K
Sbjct: 84 DMVVGDGTK 92
>gi|11467044|ref|NP_041951.1| RNA polymerase beta subunit [Euglena gracilis]
gi|133397|sp|P23579.1|RPOB_EUGGR RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|311709|emb|CAA35052.1| RNA polymerase subunit [Euglena gracilis]
gi|415794|emb|CAA50138.1| RNA polymerase subunit [Euglena gracilis]
Length = 1082
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 13/64 (20%)
Query: 26 IDIIFNPLEVPPRMNIGHIFEC-------------SLRHFDERYKQKGSRKLVLSKLYKA 72
+D+I NPL +P RMN+G +FE ++ FDE S+ V KL +A
Sbjct: 867 VDMILNPLGIPSRMNVGQVFESLLNLSSLFLKERYKIQPFDEVQTSMNSKSFVYKKLNEA 926
Query: 73 CKQT 76
K+T
Sbjct: 927 RKRT 930
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.327 0.142 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,582,047,354
Number of Sequences: 23463169
Number of extensions: 54136217
Number of successful extensions: 120164
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3040
Number of HSP's successfully gapped in prelim test: 435
Number of HSP's that attempted gapping in prelim test: 115806
Number of HSP's gapped (non-prelim): 3583
length of query: 96
length of database: 8,064,228,071
effective HSP length: 65
effective length of query: 31
effective length of database: 6,539,122,086
effective search space: 202712784666
effective search space used: 202712784666
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 69 (31.2 bits)