BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045556
(96 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q09G54|RPOB_PLAOC DNA-directed RNA polymerase subunit beta OS=Platanus occidentalis
GN=rpoB PE=3 SV=1
Length = 1070
Score = 94.7 bits (234), Expect = 1e-19, Method: Composition-based stats.
Identities = 49/94 (52%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
ID++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LYKA
Sbjct: 848 IDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYKA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ VL
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVL 941
>sp|A0A327|RPOB_COFAR DNA-directed RNA polymerase subunit beta OS=Coffea arabica GN=rpoB
PE=3 SV=1
Length = 1066
Score = 94.4 bits (233), Expect = 2e-19, Method: Composition-based stats.
Identities = 48/94 (51%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 844 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYQA 903
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ GNPF++ VL
Sbjct: 904 SKQTANPWVFEAEYPGKSRIFDGRTGNPFEQPVL 937
>sp|Q68S14|RPOB_PANGI DNA-directed RNA polymerase subunit beta OS=Panax ginseng GN=rpoB
PE=3 SV=1
Length = 1071
Score = 94.0 bits (232), Expect = 2e-19, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 61/94 (64%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VPPRMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 849 VDMVFNPLGVPPRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 908
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 909 GKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 942
>sp|Q33C46|RPOB_NICTO DNA-directed RNA polymerase subunit beta OS=Nicotiana
tomentosiformis GN=rpoB PE=3 SV=1
Length = 1070
Score = 94.0 bits (232), Expect = 2e-19, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 64/104 (61%), Gaps = 25/104 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+ R ++D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 840 PYLQDGR--SVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASR 897
Query: 63 KLVLSKLYKACKQTANP----------CKTLDGQMGNPFKEHVL 96
KLV S+LY+A KQTANP + DG+ GNPF++ V+
Sbjct: 898 KLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGNPFEQPVI 941
>sp|P06271|RPOB_TOBAC DNA-directed RNA polymerase subunit beta OS=Nicotiana tabacum
GN=rpoB PE=3 SV=1
Length = 1070
Score = 94.0 bits (232), Expect = 2e-19, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 64/104 (61%), Gaps = 25/104 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+ R ++D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 840 PYLQDGR--SVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASR 897
Query: 63 KLVLSKLYKACKQTANP----------CKTLDGQMGNPFKEHVL 96
KLV S+LY+A KQTANP + DG+ GNPF++ V+
Sbjct: 898 KLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGNPFEQPVI 941
>sp|Q3C1G7|RPOB_NICSY DNA-directed RNA polymerase subunit beta OS=Nicotiana sylvestris
GN=rpoB PE=3 SV=1
Length = 1070
Score = 94.0 bits (232), Expect = 2e-19, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 64/104 (61%), Gaps = 25/104 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+ R ++D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 840 PYLQDGR--SVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASR 897
Query: 63 KLVLSKLYKACKQTANP----------CKTLDGQMGNPFKEHVL 96
KLV S+LY+A KQTANP + DG+ GNPF++ V+
Sbjct: 898 KLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGNPFEQPVI 941
>sp|Q8S8X9|RPOB_ATRBE DNA-directed RNA polymerase subunit beta OS=Atropa belladonna
GN=rpoB PE=3 SV=1
Length = 1070
Score = 94.0 bits (232), Expect = 2e-19, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 64/104 (61%), Gaps = 25/104 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+ R ++D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 840 PYLQDGR--SVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASR 897
Query: 63 KLVLSKLYKACKQTANP----------CKTLDGQMGNPFKEHVL 96
KLV S+LY+A KQTANP + DG+ GNPF++ V+
Sbjct: 898 KLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGNPFEQPVI 941
>sp|Q2MIJ5|RPOB_SOLBU DNA-directed RNA polymerase subunit beta OS=Solanum bulbocastanum
GN=rpoB PE=3 SV=1
Length = 1070
Score = 93.6 bits (231), Expect = 3e-19, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 64/104 (61%), Gaps = 25/104 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+ R ++D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 840 PYLQDGR--SVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASR 897
Query: 63 KLVLSKLYKACKQTANP----------CKTLDGQMGNPFKEHVL 96
KLV S+LY+A KQTANP + DG+ GNPF++ V+
Sbjct: 898 KLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGNPFEQPVI 941
>sp|Q2VEI4|RPOB_SOLTU DNA-directed RNA polymerase subunit beta OS=Solanum tuberosum
GN=rpoB PE=3 SV=1
Length = 1070
Score = 93.6 bits (231), Expect = 3e-19, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 64/104 (61%), Gaps = 25/104 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+ R ++D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 840 PYLQDGR--SVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASR 897
Query: 63 KLVLSKLYKACKQTANP----------CKTLDGQMGNPFKEHVL 96
KLV S+LY+A KQTANP + DG+ GNPF++ V+
Sbjct: 898 KLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGNPFEQPVI 941
>sp|Q2MIA8|RPOB_SOLLC DNA-directed RNA polymerase subunit beta OS=Solanum lycopersicum
GN=rpoB PE=3 SV=1
Length = 1070
Score = 93.6 bits (231), Expect = 3e-19, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 64/104 (61%), Gaps = 25/104 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+ R ++D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 840 PYLQDGR--SVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASR 897
Query: 63 KLVLSKLYKACKQTANP----------CKTLDGQMGNPFKEHVL 96
KLV S+LY+A KQTANP + DG+ GNPF++ V+
Sbjct: 898 KLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGNPFEQPVI 941
>sp|A7Y3B9|RPOB_IPOPU DNA-directed RNA polymerase subunit beta OS=Ipomoea purpurea
GN=rpoB PE=3 SV=1
Length = 1067
Score = 93.2 bits (230), Expect = 4e-19, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 64/104 (61%), Gaps = 25/104 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+ R ++D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 837 PYLQDGR--SVDLVFNPLGVPSRMNLGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASR 894
Query: 63 KLVLSKLYKACKQTANP----------CKTLDGQMGNPFKEHVL 96
K+V S+LY+A KQTANP + DG+ GNPF++ VL
Sbjct: 895 KVVFSELYEASKQTANPWAFEPEYPGKSRIFDGRTGNPFEQPVL 938
>sp|Q5QA72|RPOB_ACOGR DNA-directed RNA polymerase subunit beta OS=Acorus gramineus
GN=rpoB PE=3 SV=1
Length = 1071
Score = 92.0 bits (227), Expect = 8e-19, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 849 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 908
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ VL
Sbjct: 909 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVL 942
>sp|Q3V542|RPOB_ACOCL DNA-directed RNA polymerase subunit beta OS=Acorus calamus GN=rpoB
PE=3 SV=2
Length = 1071
Score = 92.0 bits (227), Expect = 8e-19, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 849 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 908
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ VL
Sbjct: 909 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVL 942
>sp|P11703|RPOB_SPIOL DNA-directed RNA polymerase subunit beta OS=Spinacia oleracea
GN=rpoB PE=3 SV=1
Length = 1070
Score = 92.0 bits (227), Expect = 1e-18, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D+IFNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMIFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 941
>sp|Q06GR8|RPOB_PIPCE DNA-directed RNA polymerase subunit beta OS=Piper cenocladum
GN=rpoB PE=3 SV=1
Length = 1070
Score = 91.7 bits (226), Expect = 1e-18, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDFLGRHYRVAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF + VL
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDPFDQPVL 941
>sp|Q06RD9|RPOB_JASNU DNA-directed RNA polymerase subunit beta OS=Jasminum nudiflorum
GN=rpoB PE=3 SV=1
Length = 1064
Score = 91.7 bits (226), Expect = 1e-18, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 842 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIVPFDERYEQEASRKLVFSELYEA 901
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ GNPF++ +L
Sbjct: 902 SKQTTNPWVFEPEYPGKSRIFDGRSGNPFEQPIL 935
>sp|A6MM28|RPOB_BUXMI DNA-directed RNA polymerase subunit beta OS=Buxus microphylla
GN=rpoB PE=3 SV=1
Length = 1070
Score = 91.7 bits (226), Expect = 1e-18, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 941
>sp|A4QLI6|RPOB_LOBMA DNA-directed RNA polymerase subunit beta OS=Lobularia maritima
GN=rpoB PE=3 SV=1
Length = 1072
Score = 91.3 bits (225), Expect = 1e-18, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYQA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 910 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 943
>sp|A4QJJ1|RPOB_AETGR DNA-directed RNA polymerase subunit beta OS=Aethionema grandiflora
GN=rpoB PE=3 SV=1
Length = 1073
Score = 91.3 bits (225), Expect = 1e-18, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 851 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 910
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 911 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 944
>sp|A4QJA7|RPOB_AETCO DNA-directed RNA polymerase subunit beta OS=Aethionema cordifolium
GN=rpoB PE=3 SV=1
Length = 1073
Score = 91.3 bits (225), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 851 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 910
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 911 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 944
>sp|Q0G9M7|RPOB_LIRTU DNA-directed RNA polymerase subunit beta OS=Liriodendron tulipifera
GN=rpoB PE=3 SV=2
Length = 1070
Score = 91.3 bits (225), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYSA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 908 SKQTANPWVFEPECPGKSRIFDGRTGDPFEQPVI 941
>sp|A4QK10|RPOB_ARAHI DNA-directed RNA polymerase subunit beta OS=Arabis hirsuta GN=rpoB
PE=3 SV=1
Length = 1072
Score = 91.3 bits (225), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 910 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 943
>sp|A4QJS5|RPOB_OLIPU DNA-directed RNA polymerase subunit beta OS=Olimarabidopsis pumila
GN=rpoB PE=3 SV=1
Length = 1072
Score = 91.3 bits (225), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 910 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 943
>sp|A4QL11|RPOB_DRANE DNA-directed RNA polymerase subunit beta OS=Draba nemorosa GN=rpoB
PE=3 SV=1
Length = 1072
Score = 91.3 bits (225), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 910 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 943
>sp|A4QL98|RPOB_LEPVR DNA-directed RNA polymerase subunit beta OS=Lepidium virginicum
GN=rpoB PE=3 SV=1
Length = 1072
Score = 91.3 bits (225), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 910 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 943
>sp|Q9MTM5|RPOB_OENEH DNA-directed RNA polymerase subunit beta OS=Oenothera elata subsp.
hookeri GN=rpoB PE=3 SV=2
Length = 1072
Score = 90.9 bits (224), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGFAGDLLERHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 910 SKQTANPWVFEPEYPGKSRLFDGRTGDPFEQPVI 943
>sp|Q09FW9|RPOB_NANDO DNA-directed RNA polymerase subunit beta OS=Nandina domestica
GN=rpoB PE=3 SV=1
Length = 1070
Score = 90.9 bits (224), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF + V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDPFAQPVI 941
>sp|Q14FG5|RPOB_POPAL DNA-directed RNA polymerase subunit beta OS=Populus alba GN=rpoB
PE=3 SV=1
Length = 1070
Score = 90.5 bits (223), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLARHYRVAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 908 GKQTANPWVFEPECPGKSRIFDGRTGDPFEQPVI 941
>sp|Q6EW56|RPOB_NYMAL DNA-directed RNA polymerase subunit beta OS=Nymphaea alba GN=rpoB
PE=3 SV=1
Length = 1071
Score = 90.5 bits (223), Expect = 3e-18, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G +FECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 849 VDMVFNPLGVPSRMNVGQMFECSLGLAGDLLGRHYRITPFDERYEQEASRKLVFSELYEA 908
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 909 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 942
>sp|Q09MI6|RPOB_CITSI DNA-directed RNA polymerase subunit beta OS=Citrus sinensis GN=rpoB
PE=3 SV=1
Length = 1070
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF+E VL
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEEPVL 941
>sp|Q0ZJ28|RPOB_VITVI DNA-directed RNA polymerase subunit beta OS=Vitis vinifera GN=rpoB
PE=3 SV=1
Length = 1070
Score = 90.1 bits (222), Expect = 4e-18, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDE+Y+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDEKYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 941
>sp|Q49L06|RPOB_EUCGG DNA-directed RNA polymerase subunit beta OS=Eucalyptus globulus
subsp. globulus GN=rpoB PE=3 SV=1
Length = 1072
Score = 90.1 bits (222), Expect = 4e-18, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
+QTANP + DG+ G+PF++ V+
Sbjct: 910 SQQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 943
>sp|A4QLS5|RPOB_NASOF DNA-directed RNA polymerase subunit beta OS=Nasturtium officinale
GN=rpoB PE=3 SV=1
Length = 1072
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LYKA
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYKA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 910 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 943
>sp|Q8HVY5|RPOB_SOYBN DNA-directed RNA polymerase subunit beta OS=Glycine max GN=rpoB
PE=3 SV=2
Length = 1070
Score = 90.1 bits (222), Expect = 4e-18, Method: Composition-based stats.
Identities = 46/91 (50%), Positives = 57/91 (62%), Gaps = 23/91 (25%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGMLERHYRITPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKE 93
KQT+NP K DG+ GN FK+
Sbjct: 908 SKQTSNPWIFEPEYPGKSKIFDGRTGNSFKQ 938
>sp|Q2L8Z9|RPOB_GOSHI DNA-directed RNA polymerase subunit beta OS=Gossypium hirsutum
GN=rpoB PE=3 SV=1
Length = 1070
Score = 89.7 bits (221), Expect = 4e-18, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G +FECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQLFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYQA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGGPFEQPVI 941
>sp|A0ZZ27|RPOB_GOSBA DNA-directed RNA polymerase subunit beta OS=Gossypium barbadense
GN=rpoB PE=3 SV=1
Length = 1070
Score = 89.7 bits (221), Expect = 4e-18, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G +FECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQLFECSLGLAGSLLDRHHRIAPFDERYEQEASRKLVFSELYQA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGGPFEQPVI 941
>sp|A8W3B6|RPOB_CUSEX DNA-directed RNA polymerase subunit beta OS=Cuscuta exaltata
GN=rpoB PE=3 SV=1
Length = 1070
Score = 89.7 bits (221), Expect = 5e-18, Method: Composition-based stats.
Identities = 48/104 (46%), Positives = 62/104 (59%), Gaps = 25/104 (24%)
Query: 16 PFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSR 62
P+ R ++D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SR
Sbjct: 840 PYLQDGR--SVDLVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASR 897
Query: 63 KLVLSKLYKACKQTANP----------CKTLDGQMGNPFKEHVL 96
K+V S+LY+A KQTANP + DG+ GN F+ VL
Sbjct: 898 KIVFSELYEASKQTANPWAFEPEYPGKSRIFDGRTGNTFEHPVL 941
>sp|A6MMJ9|RPOB_DIOEL DNA-directed RNA polymerase subunit beta OS=Dioscorea elephantipes
GN=rpoB PE=3 SV=1
Length = 1070
Score = 89.7 bits (221), Expect = 5e-18, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 58/94 (61%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYSA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ VL
Sbjct: 908 SKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVL 941
>sp|Q9BBS9|RPOB_LOTJA DNA-directed RNA polymerase subunit beta OS=Lotus japonicus GN=rpoB
PE=3 SV=1
Length = 1070
Score = 89.7 bits (221), Expect = 5e-18, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSELYQA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT+NP + DG+ G PF++ V+
Sbjct: 908 SKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVI 941
>sp|Q0G9X0|RPOB_DAUCA DNA-directed RNA polymerase subunit beta OS=Daucus carota GN=rpoB
PE=3 SV=1
Length = 1070
Score = 89.4 bits (220), Expect = 5e-18, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYQA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTA P + DG+ G+PF++ V+
Sbjct: 908 SKQTATPWVFEPEYPGKSRIFDGRTGDPFEQPVI 941
>sp|Q06H05|RPOB_DRIGR DNA-directed RNA polymerase subunit beta OS=Drimys granadensis
GN=rpoB PE=3 SV=1
Length = 1071
Score = 89.4 bits (220), Expect = 6e-18, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV +LY+A
Sbjct: 849 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFPELYEA 908
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 909 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 942
>sp|A9LYH7|RPOB_ACOAM DNA-directed RNA polymerase subunit beta OS=Acorus americanus
GN=rpoB PE=3 SV=1
Length = 1083
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 861 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEA 920
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ VL
Sbjct: 921 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVL 954
>sp|A6MMB4|RPOB_CHLSC DNA-directed RNA polymerase subunit beta OS=Chloranthus spicatus
GN=rpoB PE=3 SV=1
Length = 1070
Score = 89.4 bits (220), Expect = 7e-18, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV +LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFPELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 908 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 941
>sp|A4GYQ0|RPOB_POPTR DNA-directed RNA polymerase subunit beta OS=Populus trichocarpa
GN=rpoB PE=3 SV=1
Length = 1070
Score = 89.0 bits (219), Expect = 7e-18, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRVAPFDERYEQEASRKLVFSELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP + DG+ G+PF++ V+
Sbjct: 908 GKQTGNPWVFEPECPGKSRIFDGRTGDPFEQPVI 941
>sp|A9L988|RPOB_LEMMI DNA-directed RNA polymerase subunit beta OS=Lemna minor GN=rpoB
PE=3 SV=1
Length = 1072
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGDLLNRHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT NP K DG+ G+PF++ VL
Sbjct: 910 SKQTKNPWVFEPEYPGKSKIFDGRTGDPFEQAVL 943
>sp|A8SE86|RPOB_CERDE DNA-directed RNA polymerase subunit beta OS=Ceratophyllum demersum
GN=rpoB PE=3 SV=1
Length = 1070
Score = 89.0 bits (219), Expect = 9e-18, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
ID++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV +LY+A
Sbjct: 848 IDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFPELYEA 907
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQT+NP + DG+ G+PF++ V+
Sbjct: 908 SKQTSNPWVFEPEYPGKSRIFDGRTGDPFEQPVI 941
>sp|A4QKS3|RPOB_CRUWA DNA-directed RNA polymerase subunit beta OS=Crucihimalaya wallichii
GN=rpoB PE=3 SV=1
Length = 1072
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 910 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 943
>sp|P46818|RPOB_SINAL DNA-directed RNA polymerase subunit beta OS=Sinapis alba GN=rpoB
PE=1 SV=2
Length = 1078
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 856 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 915
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 916 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 949
>sp|P50546|RPOB_ARATH DNA-directed RNA polymerase subunit beta OS=Arabidopsis thaliana
GN=rpoB PE=2 SV=4
Length = 1072
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 910 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 943
>sp|A4QKI4|RPOB_CAPBU DNA-directed RNA polymerase subunit beta OS=Capsella bursa-pastoris
GN=rpoB PE=3 SV=1
Length = 1072
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 23/94 (24%)
Query: 26 IDIIFNPLEVPPRMNIGHIFECSL--------RH-----FDERYKQKGSRKLVLSKLYKA 72
+D++FNPL VP RMN+G IFECSL RH FDERY+Q+ SRKLV S+LY+A
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEA 909
Query: 73 CKQTANP----------CKTLDGQMGNPFKEHVL 96
KQTANP + DG+ G+PF++ V+
Sbjct: 910 SKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 943
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.142 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,241,480
Number of Sequences: 539616
Number of extensions: 1341628
Number of successful extensions: 3957
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2836
Number of HSP's gapped (non-prelim): 941
length of query: 96
length of database: 191,569,459
effective HSP length: 66
effective length of query: 30
effective length of database: 155,954,803
effective search space: 4678644090
effective search space used: 4678644090
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)