Query 045556
Match_columns 96
No_of_seqs 121 out of 1089
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 03:17:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045556.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045556hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0085 RpoB DNA-directed RNA 100.0 6.7E-36 1.5E-40 261.1 5.8 90 1-96 844-941 (1060)
2 TIGR03670 rpoB_arch DNA-direct 100.0 1.2E-34 2.6E-39 242.9 5.8 90 1-96 367-464 (599)
3 PRK07225 DNA-directed RNA poly 100.0 1.2E-34 2.6E-39 243.0 5.2 90 1-96 373-470 (605)
4 PF00562 RNA_pol_Rpb2_6: RNA p 100.0 2.1E-34 4.6E-39 230.0 1.9 89 2-96 252-348 (386)
5 PRK08565 DNA-directed RNA poly 100.0 4.1E-33 9E-38 245.0 6.0 90 1-96 871-968 (1103)
6 PRK00405 rpoB DNA-directed RNA 100.0 3.4E-32 7.3E-37 239.6 6.3 90 1-96 895-992 (1112)
7 TIGR02013 rpoB DNA-directed RN 100.0 6E-32 1.3E-36 237.3 6.1 90 1-96 852-952 (1065)
8 cd00653 RNA_pol_B_RPB2 RNA pol 100.0 8.3E-32 1.8E-36 232.2 6.0 90 1-96 645-742 (866)
9 CHL00207 rpoB RNA polymerase b 100.0 3.8E-31 8.2E-36 232.4 5.6 90 1-96 825-937 (1077)
10 CHL00001 rpoB RNA polymerase b 100.0 3.4E-31 7.5E-36 232.7 4.8 90 1-96 829-941 (1070)
11 PRK09603 bifunctional DNA-dire 100.0 6.4E-30 1.4E-34 236.3 5.6 90 1-96 1103-1258(2890)
12 KOG0215 RNA polymerase III, se 99.9 2.2E-28 4.8E-33 210.4 4.7 90 1-96 926-1023(1153)
13 PRK14844 bifunctional DNA-dire 99.9 3.1E-28 6.6E-33 224.9 5.8 44 1-50 1096-1139(2836)
14 KOG0216 RNA polymerase I, seco 99.9 2.2E-28 4.8E-33 210.6 4.3 90 1-96 871-972 (1111)
15 KOG0214 RNA polymerase II, sec 99.9 5.8E-27 1.3E-31 202.8 4.5 89 2-96 912-1008(1141)
16 cd01787 GRB7_RA RA (RAS-associ 49.9 4.2 9E-05 27.0 -0.5 27 17-50 8-34 (85)
17 PF06311 NumbF: NUMB domain; 46.9 9.9 0.00021 25.5 0.9 20 31-50 1-20 (88)
18 PF07818 HCNGP: HCNGP-like pro 43.3 12 0.00025 25.1 0.8 18 20-38 58-75 (96)
19 COG4172 ABC-type uncharacteriz 40.2 13 0.00028 31.9 0.8 42 35-76 376-417 (534)
20 PRK10556 hypothetical protein; 38.0 11 0.00023 26.2 -0.0 34 14-49 77-110 (111)
21 PRK09613 thiH thiamine biosynt 34.9 23 0.00051 29.7 1.5 34 59-92 363-397 (469)
22 cd00419 Ferrochelatase_C Ferro 33.1 22 0.00048 24.6 1.0 60 25-84 18-111 (135)
23 PF02037 SAP: SAP domain; Int 32.6 58 0.0013 17.5 2.4 20 60-79 4-23 (35)
24 KOG0808 Carbon-nitrogen hydrol 32.1 24 0.00052 28.7 1.1 31 7-50 241-271 (387)
25 TIGR03505 FimV_core FimV N-ter 31.4 12 0.00027 23.8 -0.5 18 30-47 28-49 (74)
26 KOG0772 Uncharacterized conser 29.5 26 0.00057 30.7 1.0 12 25-36 512-523 (641)
27 PF14056 DUF4250: Domain of un 27.9 50 0.0011 20.2 1.8 19 59-77 31-49 (55)
28 PRK14173 bifunctional 5,10-met 27.0 1.5E+02 0.0032 23.5 4.8 59 28-88 92-165 (287)
29 PRK14179 bifunctional 5,10-met 26.9 1.4E+02 0.003 23.6 4.6 32 57-88 137-168 (284)
30 PRK14170 bifunctional 5,10-met 26.3 1.6E+02 0.0035 23.3 4.8 59 28-88 94-167 (284)
31 PF13670 PepSY_2: Peptidase pr 25.4 1.5E+02 0.0032 18.4 3.7 34 60-93 29-82 (83)
32 PRK14186 bifunctional 5,10-met 24.9 1.8E+02 0.0038 23.2 4.8 59 28-88 95-168 (297)
33 PRK14194 bifunctional 5,10-met 23.5 1.9E+02 0.0041 23.0 4.8 59 28-88 96-169 (301)
34 smart00596 PRE_C2HC PRE_C2HC d 23.2 62 0.0014 20.7 1.7 29 63-91 2-30 (69)
35 PF15076 DUF4543: Domain of un 23.1 38 0.00083 21.9 0.7 9 29-37 58-66 (75)
36 PRK14193 bifunctional 5,10-met 22.6 2.1E+02 0.0045 22.6 4.8 59 28-88 95-168 (284)
37 PRK06083 sulfur carrier protei 22.6 36 0.00078 22.1 0.5 28 21-48 14-43 (84)
38 smart00513 SAP Putative DNA-bi 22.5 1.3E+02 0.0029 15.8 2.7 21 60-80 4-24 (35)
39 PF06925 MGDG_synth: Monogalac 22.4 33 0.00071 23.9 0.3 52 25-76 89-159 (169)
40 PRK14183 bifunctional 5,10-met 22.4 2.2E+02 0.0048 22.5 4.9 58 28-87 94-166 (281)
41 PRK14177 bifunctional 5,10-met 22.3 2.1E+02 0.0045 22.7 4.8 32 57-88 138-169 (284)
42 PRK13562 acetolactate synthase 20.8 41 0.00088 22.2 0.4 13 60-72 56-68 (84)
43 PRK14174 bifunctional 5,10-met 20.4 2.3E+02 0.0049 22.5 4.6 59 28-88 94-169 (295)
44 PRK14188 bifunctional 5,10-met 20.2 2.3E+02 0.0051 22.4 4.7 33 57-89 137-169 (296)
No 1
>COG0085 RpoB DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]
Probab=100.00 E-value=6.7e-36 Score=261.14 Aligned_cols=90 Identities=32% Similarity=0.470 Sum_probs=86.7
Q ss_pred CcceeccCCCccCCCCCcCCCCCCCCcEEeCCCCCCCCcccccccccccc--------cccccccCCCcHHHHHHHHHHh
Q 045556 1 MLLEIAHFEDVELLWPFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSLR--------HFDERYKQKGSRKLVLSKLYKA 72 (96)
Q Consensus 1 ~~~~i~~~ed~~eDMPf~~dG~~~~pDiIiNPhgvPSRMtIGqllE~~lG--------~~dg~~~~~~~~~~i~~~L~~~ 72 (96)
.||+|||+|| |||++||+ +||||||||||||||||||++|+|+| .++++.|++.+.+++++.|+++
T Consensus 844 Vis~i~p~eD----MPf~~~G~--~~DiilNP~gvPSRM~iGqilE~~lG~a~~~~G~~~~~~~F~g~~~~~~~~~l~~~ 917 (1060)
T COG0085 844 VVSKIVPQED----MPFLEDGT--PPDIILNPLGVPSRMNIGQILETHLGKAAALLGIPVDTPVFDGAPEEDIRELLKEA 917 (1060)
T ss_pred eeeeecCccc----CCcCCCCC--cccEEECCCCCCccccHHHHHHHHHHHHHHhcCceeccCCcCCCCHHHHHHHHHHc
Confidence 4899999999 99999999 99999999999999999999999999 6788889999999999999999
Q ss_pred ccCCCCCceeecCCCCccCCCCCC
Q 045556 73 CKQTANPCKTLDGQMGNPFKEHVL 96 (96)
Q Consensus 73 g~~~~g~e~lydG~TGe~~~~~I~ 96 (96)
||+++|+++||||+|||+|+++|+
T Consensus 918 g~~~~Gk~~lydG~TGe~~~~~i~ 941 (1060)
T COG0085 918 GFPYSGKEVLYDGRTGEPFDAPIF 941 (1060)
T ss_pred CCCCCCCEEeecCCCCCcccccEE
Confidence 999999999999999999999985
No 2
>TIGR03670 rpoB_arch DNA-directed RNA polymerase subunit B. This model represents the archaeal version of DNA-directed RNA polymerase subunit B (rpoB) and is observed in all archaeal genomes.
Probab=100.00 E-value=1.2e-34 Score=242.89 Aligned_cols=90 Identities=22% Similarity=0.318 Sum_probs=85.7
Q ss_pred CcceeccCCCccCCCCCcCCCCCCCCcEEeCCCCCCCCcccccccccccc--------cccccccCCCcHHHHHHHHHHh
Q 045556 1 MLLEIAHFEDVELLWPFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSLR--------HFDERYKQKGSRKLVLSKLYKA 72 (96)
Q Consensus 1 ~~~~i~~~ed~~eDMPf~~dG~~~~pDiIiNPhgvPSRMtIGqllE~~lG--------~~dg~~~~~~~~~~i~~~L~~~ 72 (96)
.||.|+|+|| |||++||+ +|||||||||||||||||||+|+++| .+|+++|.+.+.+++.+.|+++
T Consensus 367 vvs~i~~~eD----MPft~~G~--~pDiIiNPhg~PSRMTiGqllE~~~gk~~~~~g~~~d~t~F~~~~~~~~~~~L~~~ 440 (599)
T TIGR03670 367 VIGMIVPQED----MPFTEDGI--VPDLIINPHAIPSRMTVGQLLEMIAGKVAALEGRRVDGTPFEGEPEEELRKELLKL 440 (599)
T ss_pred eEEeEeccCC----CCcCCCCC--CCCEEECcccccccccHHHHHHHHHHHHHHhcCCEEEeCCCCCccHHHHHHHHHHc
Confidence 3789999999 99999999 99999999999999999999999999 6688889888899999999999
Q ss_pred ccCCCCCceeecCCCCccCCCCCC
Q 045556 73 CKQTANPCKTLDGQMGNPFKEHVL 96 (96)
Q Consensus 73 g~~~~g~e~lydG~TGe~~~~~I~ 96 (96)
||+++|+|+||||+||++|+++|+
T Consensus 441 g~~~~G~e~ly~G~TG~~~~~~if 464 (599)
T TIGR03670 441 GFKPDGKEVMYDGITGEKLEAEIF 464 (599)
T ss_pred CCCCCCCEEEEcCCCCCCccccEE
Confidence 999999999999999999999885
No 3
>PRK07225 DNA-directed RNA polymerase subunit B'; Validated
Probab=100.00 E-value=1.2e-34 Score=243.04 Aligned_cols=90 Identities=23% Similarity=0.299 Sum_probs=85.8
Q ss_pred CcceeccCCCccCCCCCcCCCCCCCCcEEeCCCCCCCCcccccccccccc--------cccccccCCCcHHHHHHHHHHh
Q 045556 1 MLLEIAHFEDVELLWPFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSLR--------HFDERYKQKGSRKLVLSKLYKA 72 (96)
Q Consensus 1 ~~~~i~~~ed~~eDMPf~~dG~~~~pDiIiNPhgvPSRMtIGqllE~~lG--------~~dg~~~~~~~~~~i~~~L~~~ 72 (96)
.||.|+|+|| |||++||+ +|||||||||||||||||||+|+++| .+|+++|.+.+.+++.+.|+++
T Consensus 373 vvs~i~~~eD----MPft~~G~--~PDiIiNPhg~PSRMTiGql~E~~~gk~~~~~g~~~d~t~F~~~~~~~~~~~L~~~ 446 (605)
T PRK07225 373 VIGLIVPQED----MPFTESGV--VPDLIINPHAIPSRMTVGHVLEMIGGKVGSLEGRRVDGTAFSGEDEEDLREALEKL 446 (605)
T ss_pred eEEeEecccc----CCcCCCCC--cccEEECcccccccCcHHHHHHHHHHHHHHhcCceEeecCCCCchHHHHHHHHHHh
Confidence 3789999999 99999999 99999999999999999999999999 6688889988899999999999
Q ss_pred ccCCCCCceeecCCCCccCCCCCC
Q 045556 73 CKQTANPCKTLDGQMGNPFKEHVL 96 (96)
Q Consensus 73 g~~~~g~e~lydG~TGe~~~~~I~ 96 (96)
||+++|+|+||||+||++|+++|+
T Consensus 447 g~~~~G~e~my~G~TG~~~~~~if 470 (605)
T PRK07225 447 GFEHTGKEVMYDGITGEKIEAEIF 470 (605)
T ss_pred CcCCCCeEEEEcCCCCCEecccEE
Confidence 999999999999999999999885
No 4
>PF00562 RNA_pol_Rpb2_6: RNA polymerase Rpb2, domain 6; InterPro: IPR007120 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. RNA polymerases (2.7.7.6 from EC) catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). This domain represents the hybrid-binding domain and the wall domain []. The hybrid-binding domain binds the nascent RNA strand/template DNA strand in the Pol II transcription elongation complex. This domain contains the important structural motifs, switch 3 and the flap loop and binds an active site metal ion []. This domain is also involved in binding to Rpb1 and Rpb3 []. Many of the bacterial members contain large insertions within this domain, which are known as dispensable region 2 (DRII).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2Y0S_R 3HKZ_B 2PMZ_R 3H0G_B 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B ....
Probab=100.00 E-value=2.1e-34 Score=230.03 Aligned_cols=89 Identities=29% Similarity=0.386 Sum_probs=80.7
Q ss_pred cceeccCCCccCCCCCcCCCCCCCCcEEeCCCCCCCCcccccccccccc--------cccccccCCCcHHHHHHHHHHhc
Q 045556 2 LLEIAHFEDVELLWPFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSLR--------HFDERYKQKGSRKLVLSKLYKAC 73 (96)
Q Consensus 2 ~~~i~~~ed~~eDMPf~~dG~~~~pDiIiNPhgvPSRMtIGqllE~~lG--------~~dg~~~~~~~~~~i~~~L~~~g 73 (96)
||.|+|+|| ||||+||+ +|||||||||||||||||||+|+++| .+|.++|.+.+.+++.+.|.++|
T Consensus 252 vs~i~~~eD----MPft~~G~--~pDiIiNPhgiPSRMtiGqllE~~~g~~~~~~g~~~~~t~F~~~~~~~i~~~l~~~g 325 (386)
T PF00562_consen 252 VSKILPQED----MPFTEDGI--VPDIIINPHGIPSRMTIGQLLESLLGKAGALNGRFVDATPFDESSEEDISELLKKAG 325 (386)
T ss_dssp EEEEE-TTT----SEEETTSE--B-SEEE-GGGSTTTTBTHHHHHHHHHHHHHHSTCEEB-TTTSSS-HHHHHHHHHHTT
T ss_pred Eeeeecccc----CccccCCC--cceeeecccccccccchHHHHhhhhhhhhhccccceecCCCCCcchhhhHhhhhccc
Confidence 799999999 99999999 99999999999999999999999999 66888899999999999999999
Q ss_pred cCCCCCceeecCCCCccCCCCCC
Q 045556 74 KQTANPCKTLDGQMGNPFKEHVL 96 (96)
Q Consensus 74 ~~~~g~e~lydG~TGe~~~~~I~ 96 (96)
|+++|+++||||+||++|+++|+
T Consensus 326 ~~~~g~~~l~~g~tG~~~~~~i~ 348 (386)
T PF00562_consen 326 YNYPGKEVLYDGRTGEKFEAPIF 348 (386)
T ss_dssp SHTTSEEEEBESSSSSBESSEEE
T ss_pred ccccceEEEEcCccCceEEeEEE
Confidence 99999999999999999999875
No 5
>PRK08565 DNA-directed RNA polymerase subunit B; Provisional
Probab=99.97 E-value=4.1e-33 Score=244.98 Aligned_cols=90 Identities=22% Similarity=0.323 Sum_probs=85.4
Q ss_pred CcceeccCCCccCCCCCcCCCCCCCCcEEeCCCCCCCCcccccccccccc--------cccccccCCCcHHHHHHHHHHh
Q 045556 1 MLLEIAHFEDVELLWPFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSLR--------HFDERYKQKGSRKLVLSKLYKA 72 (96)
Q Consensus 1 ~~~~i~~~ed~~eDMPf~~dG~~~~pDiIiNPhgvPSRMtIGqllE~~lG--------~~dg~~~~~~~~~~i~~~L~~~ 72 (96)
.||.|+|+|| |||++||+ +|||||||||||||||||||+|+++| .+|+++|.+.+.+++.+.|+++
T Consensus 871 v~s~i~~~ed----mPf~~~G~--~pDiI~NPh~~PSRMtiG~l~E~~~gk~~~~~g~~~d~t~F~~~~~~~~~~~L~~~ 944 (1103)
T PRK08565 871 VIGMLVPQED----MPFTEDGI--VPDLIINPHAIPSRMTVGQLLESIAGKVAALEGRFVDATPFYGEPEEELRKELLKL 944 (1103)
T ss_pred eeeeeccccc----CCcCCCCC--CccEEECCCCCcccccHHHHHHHHHHHHHHhcCceeeecCcCCchHHHHHHHHHHc
Confidence 3789999999 99999999 99999999999999999999999999 5678888888899999999999
Q ss_pred ccCCCCCceeecCCCCccCCCCCC
Q 045556 73 CKQTANPCKTLDGQMGNPFKEHVL 96 (96)
Q Consensus 73 g~~~~g~e~lydG~TGe~~~~~I~ 96 (96)
||+++|+|+||||+||++|+++|+
T Consensus 945 g~~~~G~e~l~~G~tG~~~~~~if 968 (1103)
T PRK08565 945 GYKPDGTEVMYDGRTGEKIKAPIF 968 (1103)
T ss_pred CCCCCCcEEEEcCCCCCCcccceE
Confidence 999999999999999999999985
No 6
>PRK00405 rpoB DNA-directed RNA polymerase subunit beta; Reviewed
Probab=99.97 E-value=3.4e-32 Score=239.63 Aligned_cols=90 Identities=30% Similarity=0.441 Sum_probs=84.1
Q ss_pred CcceeccCCCccCCCCCcCCCCCCCCcEEeCCCCCCCCcccccccccccc-------cccccc-cCCCcHHHHHHHHHHh
Q 045556 1 MLLEIAHFEDVELLWPFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSLR-------HFDERY-KQKGSRKLVLSKLYKA 72 (96)
Q Consensus 1 ~~~~i~~~ed~~eDMPf~~dG~~~~pDiIiNPhgvPSRMtIGqllE~~lG-------~~dg~~-~~~~~~~~i~~~L~~~ 72 (96)
.||.|+|+|| |||++||+ +|||||||||||||||||||+||++| .+++++ |.+.+.+++.+.|+++
T Consensus 895 vis~i~~~eD----MPf~~~G~--~pDiIiNPhg~PSRMtiGql~E~~~gk~~~~~g~~~~tp~f~~~~~~~~~~~l~~~ 968 (1112)
T PRK00405 895 VVSRILPVED----MPYLEDGT--PVDIVLNPLGVPSRMNIGQILETHLGWAAKGLGIKFATPVFDGAKEEEIKELLEEA 968 (1112)
T ss_pred eEEeEeccCC----CCcCCCCC--CCcEEECCCCCcccccHHHHHHHHhhHHHHhcCCeEecCccCCccHHHHHHHHHHc
Confidence 3799999999 99999999 99999999999999999999999999 445666 7778899999999999
Q ss_pred ccCCCCCceeecCCCCccCCCCCC
Q 045556 73 CKQTANPCKTLDGQMGNPFKEHVL 96 (96)
Q Consensus 73 g~~~~g~e~lydG~TGe~~~~~I~ 96 (96)
||+++|+++||||+||++|+++|+
T Consensus 969 g~~~~G~e~l~~G~tG~~~~~~if 992 (1112)
T PRK00405 969 GLPEDGKTTLYDGRTGEPFDRPVT 992 (1112)
T ss_pred CcCCCCCEEEECCCCCCCCcccEE
Confidence 999999999999999999999985
No 7
>TIGR02013 rpoB DNA-directed RNA polymerase, beta subunit. This model describes orthologs of the beta subunit of Bacterial RNA polymerase. The core enzyme consists of two alpha chains, one beta chain, and one beta' subunit.
Probab=99.97 E-value=6e-32 Score=237.33 Aligned_cols=90 Identities=32% Similarity=0.463 Sum_probs=82.5
Q ss_pred CcceeccCCCccCCCCCcCCCCCCCCcEEeCCCCCCCCcccccccccccc---c-------ccccc-cCCCcHHHHHHHH
Q 045556 1 MLLEIAHFEDVELLWPFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSLR---H-------FDERY-KQKGSRKLVLSKL 69 (96)
Q Consensus 1 ~~~~i~~~ed~~eDMPf~~dG~~~~pDiIiNPhgvPSRMtIGqllE~~lG---~-------~dg~~-~~~~~~~~i~~~L 69 (96)
.||.|+|+|| |||++||+ +|||||||||||||||||||+||++| . +++++ |.+.+.+++.+.|
T Consensus 852 vis~i~~~eD----MPf~~~G~--~pDiIiNPhg~PSRMtiGqllE~~~gka~~~~~~~~~~~~tp~f~~~~~~~~~~~l 925 (1065)
T TIGR02013 852 VVSKILPIED----MPFLEDGT--PVDIVLNPLGVPSRMNIGQILETHLGWAGKRLGRKGVPIATPVFDGASEEEIKEYL 925 (1065)
T ss_pred eEEeEecCCC----CCccCCCC--CccEEECCCCCcccccHHHHHHHHHHHHHHhccCCCeEEeccCcCCccHHHHHHHH
Confidence 3799999999 99999999 99999999999999999999999988 1 23444 6777899999999
Q ss_pred HHhccCCCCCceeecCCCCccCCCCCC
Q 045556 70 YKACKQTANPCKTLDGQMGNPFKEHVL 96 (96)
Q Consensus 70 ~~~g~~~~g~e~lydG~TGe~~~~~I~ 96 (96)
+++||+++|+++||||+||++|+++|+
T Consensus 926 ~~~g~~~~G~e~l~~G~TG~~~~~~if 952 (1065)
T TIGR02013 926 EKAGLPRDGKVRLYDGRTGEQFDRPVT 952 (1065)
T ss_pred HHcCCCCCCCEEEEcCCCCCCccccEE
Confidence 999999999999999999999999985
No 8
>cd00653 RNA_pol_B_RPB2 RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase complex contains two related members of this family, in each case they are the two largest subunits.The clamp is a mobile structure that grips DNA during elongation.
Probab=99.97 E-value=8.3e-32 Score=232.19 Aligned_cols=90 Identities=27% Similarity=0.342 Sum_probs=85.7
Q ss_pred CcceeccCCCccCCCCCcCCCCCCCCcEEeCCCCCCCCcccccccccccc--------cccccccCCCcHHHHHHHHHHh
Q 045556 1 MLLEIAHFEDVELLWPFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSLR--------HFDERYKQKGSRKLVLSKLYKA 72 (96)
Q Consensus 1 ~~~~i~~~ed~~eDMPf~~dG~~~~pDiIiNPhgvPSRMtIGqllE~~lG--------~~dg~~~~~~~~~~i~~~L~~~ 72 (96)
.||.|+|+|| |||++||+ +||||||||||||||||||++|+++| ..|+++|.+...+++.+.|.++
T Consensus 645 v~s~i~~~~d----mPf~~~G~--~pDiIiNPh~~PSRMtiGql~E~~~gk~~~~~g~~~d~t~f~~~~~~~~~~~l~~~ 718 (866)
T cd00653 645 VISKILPQED----MPFTEDGI--PPDIILNPHGFPSRMTIGQLLESLLGKAGALLGKFGDATPFDGAEEEDISELLGEA 718 (866)
T ss_pred EEEEEecccc----CCcccCCC--CCcEEecCCcCcccccHHHHHHHHHHHHHHhcCCcccccccCcchHHHHHHHHHHc
Confidence 3789999999 99999999 99999999999999999999999999 6688899888899999999999
Q ss_pred ccCCCCCceeecCCCCccCCCCCC
Q 045556 73 CKQTANPCKTLDGQMGNPFKEHVL 96 (96)
Q Consensus 73 g~~~~g~e~lydG~TGe~~~~~I~ 96 (96)
||+++|+|+||||+||++|+++|+
T Consensus 719 g~~~~G~e~~y~g~tG~~~~~~if 742 (866)
T cd00653 719 GLNYYGKEVLYDGRTGEPLEAPIF 742 (866)
T ss_pred CCCCCCcEEEEcCCCCCCcccceE
Confidence 999999999999999999999985
No 9
>CHL00207 rpoB RNA polymerase beta subunit; Provisional
Probab=99.97 E-value=3.8e-31 Score=232.40 Aligned_cols=90 Identities=30% Similarity=0.427 Sum_probs=78.2
Q ss_pred CcceeccCCCccCCCCCcCCCCCCCCcEEeCCCCCCCCcccccccccccc--------cccccccCCCcHHHHHHHHHHh
Q 045556 1 MLLEIAHFEDVELLWPFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSLR--------HFDERYKQKGSRKLVLSKLYKA 72 (96)
Q Consensus 1 ~~~~i~~~ed~~eDMPf~~dG~~~~pDiIiNPhgvPSRMtIGqllE~~lG--------~~dg~~~~~~~~~~i~~~L~~~ 72 (96)
.||+|+|+|| |||++||+ +|||||||||||||||||||+||++| .++.++|.+...+++.+.|.+.
T Consensus 825 Vvs~i~p~eD----MPf~~dG~--~pDiIlNPhg~PSRMtiGqllE~~lGka~~~l~~~~~~tpF~~~~~~~~~~~l~~~ 898 (1077)
T CHL00207 825 IISRILPRQD----MPYLPDGT--PPDIILNPLGVPSRMNVGQLFECLLGLAGDNLNKRFKILPFDEMYGSEYSRILINN 898 (1077)
T ss_pred eEEeeeccCC----CCccCCCC--CccEEECCccccccccHHHHHHHHHHHHHHhcCCcEeeccCCCCcHHHHHHHHHhh
Confidence 3799999999 99999999 99999999999999999999999999 3455677777666666666554
Q ss_pred ---------------ccCCCCCceeecCCCCccCCCCCC
Q 045556 73 ---------------CKQTANPCKTLDGQMGNPFKEHVL 96 (96)
Q Consensus 73 ---------------g~~~~g~e~lydG~TGe~~~~~I~ 96 (96)
+|+++|+++||||+||++|+++|+
T Consensus 899 ~l~~~~~~~~~~~~~~~~~~Gk~~lydG~TGe~~~~~i~ 937 (1077)
T CHL00207 899 KLNQASIKNNEYWLFNSYHPGKMVLRDGRTGYKFKNPVT 937 (1077)
T ss_pred hhhhccchhccccccCCCCCCCEEEECCCCCCCccCceE
Confidence 377789999999999999999985
No 10
>CHL00001 rpoB RNA polymerase beta subunit
Probab=99.96 E-value=3.4e-31 Score=232.65 Aligned_cols=90 Identities=33% Similarity=0.661 Sum_probs=77.4
Q ss_pred CcceeccCCCccCCCCCcCCCCCCCCcEEeCCCCCCCCcccccccccccc--------cccccccCCCcHHHH-----HH
Q 045556 1 MLLEIAHFEDVELLWPFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSLR--------HFDERYKQKGSRKLV-----LS 67 (96)
Q Consensus 1 ~~~~i~~~ed~~eDMPf~~dG~~~~pDiIiNPhgvPSRMtIGqllE~~lG--------~~dg~~~~~~~~~~i-----~~ 67 (96)
.||.|+|+|| |||++||+ +|||||||||||||||||||+||++| .+++++|.+...+++ .+
T Consensus 829 vvs~i~~~eD----MPf~~dG~--~pDiIlNP~gvPSRMtiGqllE~~~G~a~~~~g~~~~~~pf~~~~~~~~~~~~~~~ 902 (1070)
T CHL00001 829 IISKILPRQD----MPYLQDGT--PVDMVLNPLGVPSRMNVGQIFECLLGLAGDLLNRHYRIAPFDERYEQEASRKLVFS 902 (1070)
T ss_pred eEeeeecccC----CCcccCCC--CCceeeccccccccccHHHHHHHHhHHHHhhcCceeeeccCCCcchhhhhhhhhhH
Confidence 3799999999 99999999 99999999999999999999999999 456666765544444 37
Q ss_pred HHHHhcc---C-------CCCCceeecCCCCccCCCCCC
Q 045556 68 KLYKACK---Q-------TANPCKTLDGQMGNPFKEHVL 96 (96)
Q Consensus 68 ~L~~~g~---~-------~~g~e~lydG~TGe~~~~~I~ 96 (96)
.|.++|+ + ..|+++||||+||++|+++|+
T Consensus 903 ~l~~~~~~~~~~~~~~~~~~Gk~~l~dG~TG~~~~~~i~ 941 (1070)
T CHL00001 903 ELYEASKQTANPWVFEPEYPGKSRLFDGRTGDPFEQPVT 941 (1070)
T ss_pred HHHHHHHhcCCceeccCCCCCeEEEEcCCCCCCccceEE
Confidence 7888887 3 349999999999999999985
No 11
>PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed
Probab=99.96 E-value=6.4e-30 Score=236.27 Aligned_cols=90 Identities=29% Similarity=0.396 Sum_probs=80.8
Q ss_pred CcceeccCCCccCCCCCcCCCCCCCCcEEeCCCCCCCCccccccccccccc-------c------c--------------
Q 045556 1 MLLEIAHFEDVELLWPFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSLRH-------F------D-------------- 53 (96)
Q Consensus 1 ~~~~i~~~ed~~eDMPf~~dG~~~~pDiIiNPhgvPSRMtIGqllE~~lG~-------~------d-------------- 53 (96)
.||+|+|+|| |||++||+ +|||||||||||||||||||+|+|+|. + +
T Consensus 1103 ViS~I~p~ED----MPfl~dG~--~pDIIlNPlGvPSRMnIGQilE~~LG~aa~~lg~~i~~~~~~~~~~~~~~~~~~~~ 1176 (2890)
T PRK09603 1103 IVSNIVPVAD----MPYTADGE--PVDIVLNPLGVPSRMNIGQILEMHLGLVGKEFGKQIASMLEDKTKDFAKELRAKML 1176 (2890)
T ss_pred eEEEEEchhc----CCCCCCCC--CCcEEECCCCCCccccHHHHHHHHHHHHHHhcCcChhhhhhhcchhhhHHHHHHHH
Confidence 3799999999 99999999 999999999999999999999999991 0 0
Q ss_pred --------------------------------------ccc-cCCCcHHHHHHHHHHhccCCCCCceeecCCCCccCCCC
Q 045556 54 --------------------------------------ERY-KQKGSRKLVLSKLYKACKQTANPCKTLDGQMGNPFKEH 94 (96)
Q Consensus 54 --------------------------------------g~~-~~~~~~~~i~~~L~~~g~~~~g~e~lydG~TGe~~~~~ 94 (96)
+++ |++.+.+++.+.|+++||+++|++.||||+|||+|+++
T Consensus 1177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~tpvF~g~~~~~i~~~l~~aG~~~~Gk~~LyDGrTGe~f~~~ 1256 (2890)
T PRK09603 1177 EIANAINEKDPLTIHALENCSDEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEKMRER 1256 (2890)
T ss_pred hhhcccccccccccccccccchHHHHhhhhhhccCCcccCCCCCCCCHHHHHHHHHHcCCCCCCCEEEEcCCCCCCccce
Confidence 112 56677899999999999999999999999999999999
Q ss_pred CC
Q 045556 95 VL 96 (96)
Q Consensus 95 I~ 96 (96)
|+
T Consensus 1257 V~ 1258 (2890)
T PRK09603 1257 VN 1258 (2890)
T ss_pred EE
Confidence 85
No 12
>KOG0215 consensus RNA polymerase III, second largest subunit [Transcription]
Probab=99.94 E-value=2.2e-28 Score=210.36 Aligned_cols=90 Identities=21% Similarity=0.251 Sum_probs=83.1
Q ss_pred CcceeccCCCccCCCCCcCCCCCCCCcEEeCCCCCCCCcccccccccccc---ccc-----ccccCCCcHHHHHHHHHHh
Q 045556 1 MLLEIAHFEDVELLWPFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSLR---HFD-----ERYKQKGSRKLVLSKLYKA 72 (96)
Q Consensus 1 ~~~~i~~~ed~~eDMPf~~dG~~~~pDiIiNPhgvPSRMtIGqllE~~lG---~~d-----g~~~~~~~~~~i~~~L~~~ 72 (96)
.|+.||+||| |||...|+ +|||||||||||||||+|+++|.+.| +.+ |+.|.+.+++++++.|.++
T Consensus 926 VcGlIv~QED----MPFnD~GI--cPDiIMNPHGFPSRMTVGK~iELlsGKAGVl~G~~hYGTaFGgskVed~~~~Lv~h 999 (1153)
T KOG0215|consen 926 VCGLIVQQED----MPFNDQGI--CPDIIMNPHGFPSRMTVGKMIELLSGKAGVLEGTFHYGTAFGGSKVEDISEELVEH 999 (1153)
T ss_pred eeeEEeeccC----CCCcccCC--CcccccCCCCCcccchHHHHHHHhccccceeeeeEeeccccCCchHHHHHHHHHHh
Confidence 3688999999 99999999 99999999999999999999999988 444 5568889999999999999
Q ss_pred ccCCCCCceeecCCCCccCCCCCC
Q 045556 73 CKQTANPCKTLDGQMGNPFKEHVL 96 (96)
Q Consensus 73 g~~~~g~e~lydG~TGe~~~~~I~ 96 (96)
||++.||..+|+|.|||++++-|+
T Consensus 1000 GfnY~GKD~ltSGITGepLeAYIf 1023 (1153)
T KOG0215|consen 1000 GFNYSGKDMLTSGITGEPLEAYIF 1023 (1153)
T ss_pred ccCccCccccccCCCCCcceeeEE
Confidence 999999999999999999998764
No 13
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=99.94 E-value=3.1e-28 Score=224.86 Aligned_cols=44 Identities=39% Similarity=0.772 Sum_probs=43.0
Q ss_pred CcceeccCCCccCCCCCcCCCCCCCCcEEeCCCCCCCCcccccccccccc
Q 045556 1 MLLEIAHFEDVELLWPFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSLR 50 (96)
Q Consensus 1 ~~~~i~~~ed~~eDMPf~~dG~~~~pDiIiNPhgvPSRMtIGqllE~~lG 50 (96)
.||+|+|.|| |||++||| |+|||+||+|||||||||||+|||||
T Consensus 1096 VIS~IlP~eD----MPyL~DGt--pvDIvLNPLGVPSRMNvGQilE~hLG 1139 (2836)
T PRK14844 1096 VISRVVPVED----MPYLEDGT--PVDIILNPLGVPSRMNVGQILETHVG 1139 (2836)
T ss_pred eEeEEcccCC----CCcCCCCC--CceEEeCCCCCCccccHHHHHHHHHH
Confidence 4899999999 99999999 99999999999999999999999999
No 14
>KOG0216 consensus RNA polymerase I, second largest subunit [Transcription]
Probab=99.94 E-value=2.2e-28 Score=210.59 Aligned_cols=90 Identities=22% Similarity=0.191 Sum_probs=81.6
Q ss_pred CcceeccCCCccCCCCCcCCCCCCCCcEEeCCCCCCCCcccccccccccc--------cccccccC----CCcHHHHHHH
Q 045556 1 MLLEIAHFEDVELLWPFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSLR--------HFDERYKQ----KGSRKLVLSK 68 (96)
Q Consensus 1 ~~~~i~~~ed~~eDMPf~~dG~~~~pDiIiNPhgvPSRMtIGqllE~~lG--------~~dg~~~~----~~~~~~i~~~ 68 (96)
.+|..||.+| |||++.|. .|||||||||||||||||+++|+++| ..|+++|. ....+.+.+.
T Consensus 871 icS~~wP~~d----mPFtesGm--~PDii~NPH~FPSRMTIgM~iEs~AgK~~alhG~~~Datpf~~~E~~t~~dyfg~~ 944 (1111)
T KOG0216|consen 871 ICSQKWPTID----MPFTESGM--VPDIIINPHAFPSRMTIGMLIESMAGKAGALHGNAQDATPFIFSEENTAIDYFGEM 944 (1111)
T ss_pred cccccCCCCC----CCccccCc--CcceeeCCCCCcccccHHHHHHHHhchhhccccccccCCceeecCcccHHHHHHHH
Confidence 4789999999 99999999 99999999999999999999999999 56777753 2336889999
Q ss_pred HHHhccCCCCCceeecCCCCccCCCCCC
Q 045556 69 LYKACKQTANPCKTLDGQMGNPFKEHVL 96 (96)
Q Consensus 69 L~~~g~~~~g~e~lydG~TGe~~~~~I~ 96 (96)
|+++||+++|+|.||+|.+|+.|++.|+
T Consensus 945 L~~~GyNyyGnE~~YSGv~G~e~~adIf 972 (1111)
T KOG0216|consen 945 LKKAGYNYYGNEPMYSGVDGREMRADIF 972 (1111)
T ss_pred HHHcCcCccCCcccccccccceeeeeEE
Confidence 9999999999999999999999999874
No 15
>KOG0214 consensus RNA polymerase II, second largest subunit [Transcription]
Probab=99.93 E-value=5.8e-27 Score=202.80 Aligned_cols=89 Identities=25% Similarity=0.331 Sum_probs=82.4
Q ss_pred cceeccCCCccCCCCCcCCCCCCCCcEEeCCCCCCCCcccccccccccc--------cccccccCCCcHHHHHHHHHHhc
Q 045556 2 LLEIAHFEDVELLWPFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSLR--------HFDERYKQKGSRKLVLSKLYKAC 73 (96)
Q Consensus 2 ~~~i~~~ed~~eDMPf~~dG~~~~pDiIiNPhgvPSRMtIGqllE~~lG--------~~dg~~~~~~~~~~i~~~L~~~g 73 (96)
++.+.++|| ||||.+|+ +||||+|||||||||||||++||++| ..|+++|.+..+..+.+.|+++|
T Consensus 912 ig~~~~qed----mpft~eGi--~pDiiiNPhaiPSRmtig~liEc~lgk~~a~~~e~~~atpFs~v~v~~is~~l~~~g 985 (1141)
T KOG0214|consen 912 IGITYRQED----MPFTIEGI--VPDIIINPHAIPSRMTIGQLIECLLGKVAAYEGEEGDATPFSDVTVSKISANLHVYG 985 (1141)
T ss_pred ccceeecCC----CCccccCC--CcceEECcccCccccchhhhHHHhhhhhhhcccccccCCCCCccchhcccchHHHhc
Confidence 566777777 99999999 99999999999999999999999999 44677888899999999999999
Q ss_pred cCCCCCceeecCCCCccCCCCCC
Q 045556 74 KQTANPCKTLDGQMGNPFKEHVL 96 (96)
Q Consensus 74 ~~~~g~e~lydG~TGe~~~~~I~ 96 (96)
|+..|+|+||||+||++|.++|+
T Consensus 986 ~~~~G~e~~ynGrtG~~~~~~if 1008 (1141)
T KOG0214|consen 986 YQYRGNERMYNGRTGRKLRAQIF 1008 (1141)
T ss_pred cccCCCEEEecCCCCceeeeeee
Confidence 99999999999999999999875
No 16
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=49.91 E-value=4.2 Score=27.02 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=21.1
Q ss_pred CcCCCCCCCCcEEeCCCCCCCCcccccccccccc
Q 045556 17 FFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSLR 50 (96)
Q Consensus 17 f~~dG~~~~pDiIiNPhgvPSRMtIGqllE~~lG 50 (96)
|.+||+ .-=| .|++|||.+++...++-
T Consensus 8 ~~~Dg~--sK~l-----~V~~~~Ta~dV~~~L~~ 34 (85)
T cd01787 8 YSEDGA--SKSL-----EVDERMTARDVCQLLVD 34 (85)
T ss_pred EecCCC--eeEE-----EEcCCCcHHHHHHHHHH
Confidence 567787 5544 68999999999998766
No 17
>PF06311 NumbF: NUMB domain; InterPro: IPR010449 This entry represents a domain found in the cell-fate determinant Numb, and in related proteins. In Drosophila, two signalling pathways, one mediated by Numb and the other by Notch, play essential but antagonistic roles in enabling the two daughters to adopt different fates after a wide variety of asymmetric cell divisions []. Numb acts to inhibit Notch signalling, this inhibition being critical for many cell fate decisions []. Mammalian Numb (mNumb) has multiple functions and plays important roles in the regulation of neural development, including maintenance of neural progenitor cells and promotion of neuronal differentiation in the central nervous system (CNS) [].
Probab=46.94 E-value=9.9 Score=25.54 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=15.5
Q ss_pred CCCCCCCCcccccccccccc
Q 045556 31 NPLEVPPRMNIGHIFECSLR 50 (96)
Q Consensus 31 NPhgvPSRMtIGqllE~~lG 50 (96)
||||+|-|+--=.+||--.+
T Consensus 1 nP~AIpRphA~~~~L~RQgS 20 (88)
T PF06311_consen 1 NPHAIPRPHAPPSMLERQGS 20 (88)
T ss_pred CCccccCCCCCHHHHHhhhc
Confidence 89999999877676765444
No 18
>PF07818 HCNGP: HCNGP-like protein; InterPro: IPR012479 This family comprises sequences bearing significant similarity to the mouse transcriptional regulator protein HCNGP (Q02614 from SWISSPROT). This protein is localised to the nucleus and is thought to be involved in the regulation of beta-2-microglobulin genes.
Probab=43.31 E-value=12 Score=25.06 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=14.6
Q ss_pred CCCCCCCcEEeCCCCCCCC
Q 045556 20 HHRFSNIDIIFNPLEVPPR 38 (96)
Q Consensus 20 dG~~~~pDiIiNPhgvPSR 38 (96)
-|++.++| |.|||++|+.
T Consensus 58 ~gTn~p~~-i~dP~~~~~~ 75 (96)
T PF07818_consen 58 YGTNFPKD-IFDPHGFPEE 75 (96)
T ss_pred ccCCCChh-hcCCCCCCHH
Confidence 57766888 7999999875
No 19
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=40.16 E-value=13 Score=31.88 Aligned_cols=42 Identities=24% Similarity=0.404 Sum_probs=26.7
Q ss_pred CCCCcccccccccccccccccccCCCcHHHHHHHHHHhccCC
Q 045556 35 VPPRMNIGHIFECSLRHFDERYKQKGSRKLVLSKLYKACKQT 76 (96)
Q Consensus 35 vPSRMtIGqllE~~lG~~dg~~~~~~~~~~i~~~L~~~g~~~ 76 (96)
+-.|||||||++=-|-+-+-......-.+-+.+.|++.|...
T Consensus 376 LsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp 417 (534)
T COG4172 376 LSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDP 417 (534)
T ss_pred CCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCCh
Confidence 456999999998655432211111123467889999999763
No 20
>PRK10556 hypothetical protein; Provisional
Probab=37.96 E-value=11 Score=26.22 Aligned_cols=34 Identities=9% Similarity=0.150 Sum_probs=26.6
Q ss_pred CCCCcCCCCCCCCcEEeCCCCCCCCccccccccccc
Q 045556 14 LWPFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSL 49 (96)
Q Consensus 14 DMPf~~dG~~~~pDiIiNPhgvPSRMtIGqllE~~l 49 (96)
..|--..|- .++..=-||||-|||-+-+-|.++.
T Consensus 77 ~FPlyl~g~--~~~~yGIpHGFsSR~~L~ryl~~mF 110 (111)
T PRK10556 77 QFPLYLAGE--RHEHYGIPHGFSSREALERYLNGMF 110 (111)
T ss_pred ccccccccC--ccccccCCcCcchHHHHHHHHHHhc
Confidence 367667788 8888888999999998776666554
No 21
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=34.90 E-value=23 Score=29.72 Aligned_cols=34 Identities=18% Similarity=0.092 Sum_probs=27.3
Q ss_pred CCcHHHHHHHHHHhccCC-CCCceeecCCCCccCC
Q 045556 59 KGSRKLVLSKLYKACKQT-ANPCKTLDGQMGNPFK 92 (96)
Q Consensus 59 ~~~~~~i~~~L~~~g~~~-~g~e~lydG~TGe~~~ 92 (96)
.-+.+++...|.+.||.+ +.+.-..-||||+.|-
T Consensus 363 ~r~~~ev~~~l~~~g~~p~~ctacyr~grtg~~fm 397 (469)
T PRK09613 363 HRSLDEVIRELCEMGYIPSFCTACYRLGRTGDRFM 397 (469)
T ss_pred CCCHHHHHHHHHHCCCeEEEeeccccCCCchhHHH
Confidence 356789999999999985 5666677899999874
No 22
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=33.13 E-value=22 Score=24.61 Aligned_cols=60 Identities=15% Similarity=0.059 Sum_probs=35.6
Q ss_pred CCcEEeCCCCCCCCcc------ccccccc------ccc--------ccc----ccccCCCcHHHHHHHHHHhc-------
Q 045556 25 NIDIIFNPLEVPPRMN------IGHIFEC------SLR--------HFD----ERYKQKGSRKLVLSKLYKAC------- 73 (96)
Q Consensus 25 ~pDiIiNPhgvPSRMt------IGqllE~------~lG--------~~d----g~~~~~~~~~~i~~~L~~~g------- 73 (96)
...+|+.-||+|-|.. .-|+.|+ .+| .|. ....-+.+.++..+.|.+.|
T Consensus 18 ~~~llfsaHgiP~~~~~~gd~Y~~~~~~~~~~v~~~l~~~~~~~~~~fqS~~g~~~Wl~P~~~~~l~~l~~~G~~~i~v~ 97 (135)
T cd00419 18 KDRLLFSAHGLPVRDIKKGDPYPDQCEETARLVAERLGLPFDEYELAYQSRFGPGEWLEPSTDDALEELAKEGVKNVVVV 97 (135)
T ss_pred CCEEEEEcCCCHHHHhhCCCCHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEE
Confidence 4569999999998876 2222221 222 111 11122566788888888876
Q ss_pred ---cCCCCCceeec
Q 045556 74 ---KQTANPCKTLD 84 (96)
Q Consensus 74 ---~~~~g~e~lyd 84 (96)
|-..+-|++||
T Consensus 98 p~gF~~D~~Etl~d 111 (135)
T cd00419 98 PIGFVSDHLETLYE 111 (135)
T ss_pred CCccccccHHHHHH
Confidence 44566666664
No 23
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=32.58 E-value=58 Score=17.50 Aligned_cols=20 Identities=10% Similarity=-0.080 Sum_probs=16.4
Q ss_pred CcHHHHHHHHHHhccCCCCC
Q 045556 60 GSRKLVLSKLYKACKQTANP 79 (96)
Q Consensus 60 ~~~~~i~~~L~~~g~~~~g~ 79 (96)
.++.++.+.|.+.|.+.+|+
T Consensus 4 l~v~eLk~~l~~~gL~~~G~ 23 (35)
T PF02037_consen 4 LTVAELKEELKERGLSTSGK 23 (35)
T ss_dssp SHHHHHHHHHHHTTS-STSS
T ss_pred CcHHHHHHHHHHCCCCCCCC
Confidence 56788999999999998886
No 24
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=32.11 E-value=24 Score=28.69 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=25.2
Q ss_pred cCCCccCCCCCcCCCCCCCCcEEeCCCCCCCCcccccccccccc
Q 045556 7 HFEDVELLWPFFTHHRFSNIDIIFNPLEVPPRMNIGHIFECSLR 50 (96)
Q Consensus 7 ~~ed~~eDMPf~~dG~~~~pDiIiNPhgvPSRMtIGqllE~~lG 50 (96)
|..+ |-|.-+|- .||+||.+ |||-|-|.+-+
T Consensus 241 plnw----lmy~lnga----eiifnpsa-----tvgalseplwp 271 (387)
T KOG0808|consen 241 PLNW----LMYGLNGA----EIIFNPSA-----TVGALSEPLWP 271 (387)
T ss_pred chhh----hhhhccCc----eEEECCcc-----ccccccCccCc
Confidence 5555 66766666 89999987 99999999987
No 25
>TIGR03505 FimV_core FimV N-terminal domain. This region is found at, or about 200 amino acids from, the N-terminus of FimV from Pseudomonas aeruginosa, TspA of Neisseria meningitidis, and related proteins. Disruption of FimV blocks twitching motility from type IV pili; Semmler, et al. suggest a role for this family in peptidoglycan layer remodelling required by type IV fimbrial systems. Most but not all members of this protein family have a C-terminal region recognized by TIGR03504. In between is a highly variable, often repeat-filled region rich in the negatively charged amino acids Asp and Glu.
Probab=31.37 E-value=12 Score=23.81 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=14.7
Q ss_pred eCCCCC----CCCccccccccc
Q 045556 30 FNPLEV----PPRMNIGHIFEC 47 (96)
Q Consensus 30 iNPhgv----PSRMtIGqllE~ 47 (96)
.||++| ++|+-.|+.|.+
T Consensus 28 aNp~AF~~~nin~L~~G~~L~i 49 (74)
T TIGR03505 28 ANPDAFIGGNINRLKVGQILRI 49 (74)
T ss_pred HCHHhHhcCChhhcCCCCEEeC
Confidence 488887 889988888875
No 26
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=29.48 E-value=26 Score=30.68 Aligned_cols=12 Identities=42% Similarity=0.830 Sum_probs=11.0
Q ss_pred CCcEEeCCCCCC
Q 045556 25 NIDIIFNPLEVP 36 (96)
Q Consensus 25 ~pDiIiNPhgvP 36 (96)
.-|.|||||+.|
T Consensus 512 ~~~~ii~phalp 523 (641)
T KOG0772|consen 512 SEDVIINPHALP 523 (641)
T ss_pred CcceEEccccch
Confidence 679999999998
No 27
>PF14056 DUF4250: Domain of unknown function (DUF4250)
Probab=27.90 E-value=50 Score=20.16 Aligned_cols=19 Identities=11% Similarity=-0.059 Sum_probs=16.3
Q ss_pred CCcHHHHHHHHHHhccCCC
Q 045556 59 KGSRKLVLSKLYKACKQTA 77 (96)
Q Consensus 59 ~~~~~~i~~~L~~~g~~~~ 77 (96)
+.+.+++.++|+..||.+.
T Consensus 31 ~id~~~l~~kL~~~Gy~Y~ 49 (55)
T PF14056_consen 31 DIDKEELEEKLASIGYEYD 49 (55)
T ss_pred CCCHHHHHHHHHHcCCeEc
Confidence 4678999999999999864
No 28
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.96 E-value=1.5e+02 Score=23.51 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=41.2
Q ss_pred EEeCCCCCCCCcccccccccccc--------------cc-cccccCCCcHHHHHHHHHHhccCCCCCceeecCCCC
Q 045556 28 IIFNPLEVPPRMNIGHIFECSLR--------------HF-DERYKQKGSRKLVLSKLYKACKQTANPCKTLDGQMG 88 (96)
Q Consensus 28 iIiNPhgvPSRMtIGqllE~~lG--------------~~-dg~~~~~~~~~~i~~~L~~~g~~~~g~e~lydG~TG 88 (96)
|+..|+ |.-.+--.+++.+-- .+ ....|...+..-+.+.|+..|++..|+....-||+.
T Consensus 92 lvqlPL--P~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~ 165 (287)
T PRK14173 92 LVQLPL--PPHIDFQRVLEAIDPLKDVDGFHPLNVGRLWMGGEALEPCTPAGVVRLLKHYGIPLAGKEVVVVGRSN 165 (287)
T ss_pred EEeCCC--CCCCCHHHHHhccCccccccccChhhhHHHhcCCCCCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCC
Confidence 666665 665555556665543 11 112355678899999999999999999988888874
No 29
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.87 E-value=1.4e+02 Score=23.60 Aligned_cols=32 Identities=3% Similarity=-0.061 Sum_probs=28.1
Q ss_pred cCCCcHHHHHHHHHHhccCCCCCceeecCCCC
Q 045556 57 KQKGSRKLVLSKLYKACKQTANPCKTLDGQMG 88 (96)
Q Consensus 57 ~~~~~~~~i~~~L~~~g~~~~g~e~lydG~TG 88 (96)
|...+..-+.+.|+..|++..|+...+=|++|
T Consensus 137 ~~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ 168 (284)
T PRK14179 137 MIPCTPAGIMEMFREYNVELEGKHAVVIGRSN 168 (284)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEECCCC
Confidence 45677889999999999999999999988865
No 30
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.27 E-value=1.6e+02 Score=23.31 Aligned_cols=59 Identities=10% Similarity=0.089 Sum_probs=40.8
Q ss_pred EEeCCCCCCCCcccccccccccc--------------cccc-cccCCCcHHHHHHHHHHhccCCCCCceeecCCCC
Q 045556 28 IIFNPLEVPPRMNIGHIFECSLR--------------HFDE-RYKQKGSRKLVLSKLYKACKQTANPCKTLDGQMG 88 (96)
Q Consensus 28 iIiNPhgvPSRMtIGqllE~~lG--------------~~dg-~~~~~~~~~~i~~~L~~~g~~~~g~e~lydG~TG 88 (96)
|+.-|+ |.-.+--.+++.+.- .+.+ ..|...+..-+.+.|+..|++..|+....=||+.
T Consensus 94 ivqlPl--P~~i~~~~i~~~I~p~KDVDGl~p~N~g~l~~~~~~~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrS~ 167 (284)
T PRK14170 94 LVQLPL--PEHISEEKVIDTISYDKDVDGFHPVNVGNLFIGKDSFVPCTPAGIIELIKSTGTQIEGKRAVVIGRSN 167 (284)
T ss_pred EEecCC--CCCCCHHHHHhccCcccCcccCChhhhhHHhCCCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCC
Confidence 555565 666555555555543 1111 2255678899999999999999999998888873
No 31
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=25.43 E-value=1.5e+02 Score=18.39 Aligned_cols=34 Identities=24% Similarity=0.101 Sum_probs=24.6
Q ss_pred CcHHHHHHHHHHhccC-------C-----------CCC--ceeecCCCCccCCC
Q 045556 60 GSRKLVLSKLYKACKQ-------T-----------ANP--CKTLDGQMGNPFKE 93 (96)
Q Consensus 60 ~~~~~i~~~L~~~g~~-------~-----------~g~--e~lydG~TGe~~~~ 93 (96)
.+.+.+...|.+.||+ . .|+ +.-+|..||+.++.
T Consensus 29 ~~~~~~~~~l~~~G~~v~~ve~~~~g~yev~~~~~dG~~~ev~vD~~tG~V~~~ 82 (83)
T PF13670_consen 29 LSIEQAVAKLEAQGYQVREVEFDDDGCYEVEARDKDGKKVEVYVDPATGEVVKE 82 (83)
T ss_pred CCHHHHHHHHHhcCCceEEEEEcCCCEEEEEEEECCCCEEEEEEcCCCCeEeec
Confidence 5688899999999974 1 222 37788888887654
No 32
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.87 E-value=1.8e+02 Score=23.21 Aligned_cols=59 Identities=14% Similarity=0.052 Sum_probs=40.5
Q ss_pred EEeCCCCCCCCcccccccccccc--------------ccc-ccccCCCcHHHHHHHHHHhccCCCCCceeecCCCC
Q 045556 28 IIFNPLEVPPRMNIGHIFECSLR--------------HFD-ERYKQKGSRKLVLSKLYKACKQTANPCKTLDGQMG 88 (96)
Q Consensus 28 iIiNPhgvPSRMtIGqllE~~lG--------------~~d-g~~~~~~~~~~i~~~L~~~g~~~~g~e~lydG~TG 88 (96)
|+..|+ |+-.+--.+++.+.- .+. ...|...+..-+.+.|+..|.+..|+....=||+.
T Consensus 95 ivq~PL--P~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~ 168 (297)
T PRK14186 95 LLQLPL--PKHLDEVPLLHAIDPDKDADGLHPLNLGRLVKGEPGLRSCTPAGVMRLLRSQQIDIAGKKAVVVGRSI 168 (297)
T ss_pred EEeCCC--CCCCCHHHHHhccCcccCcccCChhhHHHHhCCCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCc
Confidence 566665 655555555555433 111 12255678899999999999999999999888873
No 33
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.49 E-value=1.9e+02 Score=23.05 Aligned_cols=59 Identities=12% Similarity=0.162 Sum_probs=40.8
Q ss_pred EEeCCCCCCCCcccccccccccc--------------cccc-cccCCCcHHHHHHHHHHhccCCCCCceeecCCCC
Q 045556 28 IIFNPLEVPPRMNIGHIFECSLR--------------HFDE-RYKQKGSRKLVLSKLYKACKQTANPCKTLDGQMG 88 (96)
Q Consensus 28 iIiNPhgvPSRMtIGqllE~~lG--------------~~dg-~~~~~~~~~~i~~~L~~~g~~~~g~e~lydG~TG 88 (96)
|+.-|+ |+-.+--.+++.+.- .+.+ ..|...+..-+.+.|+..|++..|+...+=|++|
T Consensus 96 lvqlPL--P~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ 169 (301)
T PRK14194 96 LLQLPL--PAHIDEARVLQAINPLKDVDGFHSENVGGLSQGRDVLTPCTPSGCLRLLEDTCGDLTGKHAVVIGRSN 169 (301)
T ss_pred EEeCCC--CCCCCHHHHHhccCchhccCccChhhhhHHhcCCCCCCCCcHHHHHHHHHHhCCCCCCCEEEEECCCC
Confidence 555664 665555555555543 1111 2245677889999999999999999999988873
No 34
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=23.17 E-value=62 Score=20.71 Aligned_cols=29 Identities=14% Similarity=0.002 Sum_probs=21.4
Q ss_pred HHHHHHHHHhccCCCCCceeecCCCCccC
Q 045556 63 KLVLSKLYKACKQTANPCKTLDGQMGNPF 91 (96)
Q Consensus 63 ~~i~~~L~~~g~~~~g~e~lydG~TGe~~ 91 (96)
++|.+.|++.||+.----.|.++++++|+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~ 30 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQ 30 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcc
Confidence 46889999999986655666677766654
No 35
>PF15076 DUF4543: Domain of unknown function (DUF4543)
Probab=23.11 E-value=38 Score=21.89 Aligned_cols=9 Identities=33% Similarity=0.427 Sum_probs=7.4
Q ss_pred EeCCCCCCC
Q 045556 29 IFNPLEVPP 37 (96)
Q Consensus 29 IiNPhgvPS 37 (96)
-+|||+.|-
T Consensus 58 WlNPHC~Ph 66 (75)
T PF15076_consen 58 WLNPHCKPH 66 (75)
T ss_pred hcCCCCCCc
Confidence 479999995
No 36
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.58 E-value=2.1e+02 Score=22.63 Aligned_cols=59 Identities=15% Similarity=0.102 Sum_probs=40.9
Q ss_pred EEeCCCCCCCCcccccccccccc--------------cc-cccccCCCcHHHHHHHHHHhccCCCCCceeecCCCC
Q 045556 28 IIFNPLEVPPRMNIGHIFECSLR--------------HF-DERYKQKGSRKLVLSKLYKACKQTANPCKTLDGQMG 88 (96)
Q Consensus 28 iIiNPhgvPSRMtIGqllE~~lG--------------~~-dg~~~~~~~~~~i~~~L~~~g~~~~g~e~lydG~TG 88 (96)
|+..|+ |+-.+--.+++.+-- .+ ....+...+..-+.+.|+..|++..|+....=||+.
T Consensus 95 lvqlPl--P~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~av~~ll~~~~i~l~Gk~vvViGrS~ 168 (284)
T PRK14193 95 IVQLPL--PKHLDENAVLERIDPAKDADGLHPTNLGRLVLNEPAPLPCTPRGIVHLLRRYDVELAGAHVVVIGRGV 168 (284)
T ss_pred EEeCCC--CCCCCHHHHHhcCCcccCccCCChhhhhHHhCCCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCC
Confidence 666665 665555555655533 11 112244677899999999999999999998888874
No 37
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=22.57 E-value=36 Score=22.08 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=20.9
Q ss_pred CCCCCCcEEeC--CCCCCCCcccccccccc
Q 045556 21 HRFSNIDIIFN--PLEVPPRMNIGHIFECS 48 (96)
Q Consensus 21 G~~~~pDiIiN--PhgvPSRMtIGqllE~~ 48 (96)
+.++...|.+| |+-+++-+||.++++.+
T Consensus 14 ~~~~~m~I~VNG~~~~~~~~~tl~~LL~~l 43 (84)
T PRK06083 14 AAMVLITISINDQSIQVDISSSLAQIIAQL 43 (84)
T ss_pred CCCceEEEEECCeEEEcCCCCcHHHHHHHc
Confidence 33446678888 88888888888888854
No 38
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=22.48 E-value=1.3e+02 Score=15.83 Aligned_cols=21 Identities=14% Similarity=-0.088 Sum_probs=17.1
Q ss_pred CcHHHHHHHHHHhccCCCCCc
Q 045556 60 GSRKLVLSKLYKACKQTANPC 80 (96)
Q Consensus 60 ~~~~~i~~~L~~~g~~~~g~e 80 (96)
.+..++.+.|++.|.+.+|+-
T Consensus 4 l~~~~Lk~~l~~~gl~~~G~K 24 (35)
T smart00513 4 LKVSELKDELKKRGLSTSGTK 24 (35)
T ss_pred CcHHHHHHHHHHcCCCCCCCH
Confidence 467889999999999888763
No 39
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=22.42 E-value=33 Score=23.88 Aligned_cols=52 Identities=12% Similarity=0.080 Sum_probs=33.4
Q ss_pred CCcEEeCCCCCCCCcccccccccccc--------cccc-----cc-cCC-----CcHHHHHHHHHHhccCC
Q 045556 25 NIDIIFNPLEVPPRMNIGHIFECSLR--------HFDE-----RY-KQK-----GSRKLVLSKLYKACKQT 76 (96)
Q Consensus 25 ~pDiIiNPhgvPSRMtIGqllE~~lG--------~~dg-----~~-~~~-----~~~~~i~~~L~~~g~~~ 76 (96)
.||+|+..|-+|+...++.+.+.-.. +.|= .+ ..+ +..++..+.|.+.|.+.
T Consensus 89 ~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD~~~~H~~W~~~~~D~y~Vase~~~~~l~~~Gi~~ 159 (169)
T PF06925_consen 89 QPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTDFDTVHPFWIHPGVDRYFVASEEVKEELIERGIPP 159 (169)
T ss_pred CCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcCCCCCCcCeecCCCCEEEECCHHHHHHHHHcCCCh
Confidence 89999999999998877665444322 1121 11 111 22477888888888753
No 40
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.38 E-value=2.2e+02 Score=22.50 Aligned_cols=58 Identities=14% Similarity=0.029 Sum_probs=40.4
Q ss_pred EEeCCCCCCCCcccccccccccc--------------cccc-cccCCCcHHHHHHHHHHhccCCCCCceeecCCC
Q 045556 28 IIFNPLEVPPRMNIGHIFECSLR--------------HFDE-RYKQKGSRKLVLSKLYKACKQTANPCKTLDGQM 87 (96)
Q Consensus 28 iIiNPhgvPSRMtIGqllE~~lG--------------~~dg-~~~~~~~~~~i~~~L~~~g~~~~g~e~lydG~T 87 (96)
|+.-|+ |.-.+--.+++.+.- .+.+ ..|...+..-+.+.|++.+.+..|+....=||+
T Consensus 94 lvq~Pl--P~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS 166 (281)
T PRK14183 94 LVQLPL--PKHIDTTKILEAIDPKKDVDGFHPYNVGRLVTGLDGFVPCTPLGVMELLEEYEIDVKGKDVCVVGAS 166 (281)
T ss_pred EEeCCC--CCCCCHHHHHhccCchhcccccChhhhhHHhcCCCCCCCCcHHHHHHHHHHcCCCCCCCEEEEECCC
Confidence 666665 655555555555433 1111 224567889999999999999999999998887
No 41
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.31 E-value=2.1e+02 Score=22.66 Aligned_cols=32 Identities=6% Similarity=-0.133 Sum_probs=27.6
Q ss_pred cCCCcHHHHHHHHHHhccCCCCCceeecCCCC
Q 045556 57 KQKGSRKLVLSKLYKACKQTANPCKTLDGQMG 88 (96)
Q Consensus 57 ~~~~~~~~i~~~L~~~g~~~~g~e~lydG~TG 88 (96)
|...+..-+.+.|+..+++..|+....=||+.
T Consensus 138 ~~PcTp~avi~ll~~y~i~l~Gk~vvViGrS~ 169 (284)
T PRK14177 138 YLPCTPYGMVLLLKEYGIDVTGKNAVVVGRSP 169 (284)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCC
Confidence 45677889999999999999999988888874
No 42
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=20.76 E-value=41 Score=22.21 Aligned_cols=13 Identities=23% Similarity=0.345 Sum_probs=8.0
Q ss_pred CcHHHHHHHHHHh
Q 045556 60 GSRKLVLSKLYKA 72 (96)
Q Consensus 60 ~~~~~i~~~L~~~ 72 (96)
...+.+.++|+|.
T Consensus 56 ~~ieqI~kQL~Kl 68 (84)
T PRK13562 56 TSLHILIKKLKQQ 68 (84)
T ss_pred HHHHHHHHHHhCC
Confidence 3456777777653
No 43
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.36 E-value=2.3e+02 Score=22.50 Aligned_cols=59 Identities=12% Similarity=0.021 Sum_probs=40.7
Q ss_pred EEeCCCCCCCCcccccccccccc--------------cccc---cccCCCcHHHHHHHHHHhccCCCCCceeecCCCC
Q 045556 28 IIFNPLEVPPRMNIGHIFECSLR--------------HFDE---RYKQKGSRKLVLSKLYKACKQTANPCKTLDGQMG 88 (96)
Q Consensus 28 iIiNPhgvPSRMtIGqllE~~lG--------------~~dg---~~~~~~~~~~i~~~L~~~g~~~~g~e~lydG~TG 88 (96)
|+.-|+ |...+--.+++.+.- .+.+ ..|...+..-+.+.|+..+.+..|+.+..=||+.
T Consensus 94 lvq~Pl--p~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~ail~ll~~y~i~l~Gk~vvViGrS~ 169 (295)
T PRK14174 94 LVQQPL--PKQIDEFAVTLAIDPAKDVDGFHPENLGRLVMGHLDKCFVSCTPYGILELLGRYNIETKGKHCVVVGRSN 169 (295)
T ss_pred EEeCCC--CCCCCHHHHHhcCCccccccccChhhHHHHhcCCCCCCcCCCCHHHHHHHHHHhCCCCCCCEEEEECCCC
Confidence 666665 666555555554433 1112 2345678889999999999999999998888873
No 44
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.20 E-value=2.3e+02 Score=22.37 Aligned_cols=33 Identities=6% Similarity=-0.113 Sum_probs=28.3
Q ss_pred cCCCcHHHHHHHHHHhccCCCCCceeecCCCCc
Q 045556 57 KQKGSRKLVLSKLYKACKQTANPCKTLDGQMGN 89 (96)
Q Consensus 57 ~~~~~~~~i~~~L~~~g~~~~g~e~lydG~TGe 89 (96)
|...+..-+.+.|+..+.+..|+.+.+=||+|-
T Consensus 137 ~~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~ 169 (296)
T PRK14188 137 LVPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNL 169 (296)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcc
Confidence 456778999999999999999999999888763
Done!