RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 045556
         (96 letters)



>d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces cerevisiae)
            [TaxId: 4932]}
          Length = 1207

 Score = 43.4 bits (101), Expect = 8e-07
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 26   IDIIFNPLEVPPRMNIGHIFECSL 49
             D+I NP  +P RM + H+ EC L
Sbjct: 991  PDLIINPHAIPSRMTVAHLIECLL 1014


>d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus
           [TaxId: 274]}
          Length = 1119

 Score = 35.5 bits (81), Expect = 4e-04
 Identities = 14/24 (58%), Positives = 17/24 (70%)

Query: 26  IDIIFNPLEVPPRMNIGHIFECSL 49
           +D+I NPL VP RMN+G I E  L
Sbjct: 867 VDVILNPLGVPSRMNLGQILETHL 890


>d1clca1 a.102.1.2 (A:135-575) CelD cellulase, C-terminal domain
           {Clostridium thermocellum [TaxId: 1515]}
          Length = 441

 Score = 26.5 bits (58), Expect = 0.59
 Identities = 7/19 (36%), Positives = 8/19 (42%)

Query: 15  WPFFTHHRFSNIDIIFNPL 33
            P   H R S  D I+ P 
Sbjct: 377 PPMNPHDRRSGADGIWEPW 395


>d1nsca_ b.68.1.1 (A:) Influenza neuraminidase {Influenza B virus,
           different strains [TaxId: 11520]}
          Length = 390

 Score = 22.9 bits (49), Expect = 8.5
 Identities = 5/15 (33%), Positives = 8/15 (53%)

Query: 34  EVPPRMNIGHIFECS 48
           E+ P   + H  EC+
Sbjct: 188 EIFPTGRVEHTEECT 202


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.142    0.457 

Gapped
Lambda     K      H
   0.267   0.0459    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 391,791
Number of extensions: 15952
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 7
Length of query: 96
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 37
Effective length of database: 1,597,526
Effective search space: 59108462
Effective search space used: 59108462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.6 bits)