BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045558
(507 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U0M|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
pdb|1U0M|B Chain B, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
Length = 382
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 76/351 (21%), Positives = 135/351 (38%), Gaps = 73/351 (20%)
Query: 136 KILERSGMGNMSYVP--KAMLDNPAGEKNMAEARKETEGVIIGAIDELLDKTGVKPRDIG 193
+++E +G+ V + L++P E +E + + I LD + DI
Sbjct: 48 RLIENTGVRTRHIVQPIEDTLEHPGFEDRNKVYEREAKSRVPAVIQRALDDAELLATDID 107
Query: 194 ILVVNSSLFNPTPSLSAMVVNHYKLRGNILSYNLGGMGCSAGLISIDLAKQLLQLQPNSY 253
+++ S PSL+A ++N + +GC+AG +I+ A P +
Sbjct: 108 VIIYVSCTGFMMPSLTAWLINEMGFDSTTRQIPIAQLGCAAGGAAINRAHDFCTAYPEAN 167
Query: 254 ALVVSTENLTMNWYAGNDRSM--LLTNCLFRLGGAAILLXXXXXXXXXXKYELVHTLRTH 311
AL+V+ E ++ Y D + LL N LF G AA ++
Sbjct: 168 ALIVACEFCSL-CYQPTDLGVGSLLCNGLFGDGIAAAVVRG------------------- 207
Query: 312 KGGDDRSYNCVSQQEDESKRIGVKISKDLMAVAGEALKTNITTLGPLVLPMSEQLLF--- 368
+GG GV++ ++ G ++P +E +
Sbjct: 208 RGG-----------------TGVRLERN----------------GSYLIPKTEDWIMYDV 234
Query: 369 TAT---LVARKIFKMKIKPYIPDFK-LAFEH---------FCIHAGGRAVLDEVEKHLKL 415
AT + K ++P P K LA EH + +HAGG +LD++ L++
Sbjct: 235 KATGFHFLLDKRVPATMEPLAPALKELAGEHGWDASDLDFYIVHAGGPRILDDLSTFLEV 294
Query: 416 NEWVMEPSRMTLYRFGNTSSSCLWYELAYFEAKGRIRKGDKTWQIAFGSGF 466
+ SR TL +GN +S+ + L +G + +G + FG G
Sbjct: 295 DPHAFRFSRATLTEYGNIASAVVLDALRRLFDEGGVEEGARGLLAGFGPGI 345
>pdb|1QLV|A Chain A, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1QLV|B Chain B, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1EE0|A Chain A, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
pdb|1EE0|B Chain B, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
Length = 402
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 79/367 (21%), Positives = 146/367 (39%), Gaps = 59/367 (16%)
Query: 135 KKILERSGMGN--MSYVPKAMLDNPAGEKNMAEARKETEGVIIGAIDELLDKTGVKPRD- 191
K+I E++ + ++ + +NP + MA + + +++ + L + VK D
Sbjct: 62 KRICEKTAIKKRYLALTEDYLQENPTMCEFMAPSLNARQDLVVTGVPMLGKEAAVKAIDE 121
Query: 192 -------IGILVVNSSLFNPTPSLSAMVVNHYKLRGNILSYNLGGMGCSAGLISIDLAKQ 244
I L+ ++ P +V L ++ Y L G +AG + LAK
Sbjct: 122 WGLPKSKITHLIFCTTAGVDMPGADYQLVKLLGLSPSVKRYMLYQQGXAAGGTVLRLAKD 181
Query: 245 LLQLQPNSYALVVSTENLTMNWYAGNDRSM--LLTNCLFRLGGAAILLXXXXXXXXXXK- 301
L + S L+V +E + ++ N+ + L+ LF G AA+++
Sbjct: 182 LAENNKGSRVLIVCSEITAILFHGPNENHLDSLVAQALFGDGAAALIVGSGPHLAVERPI 241
Query: 302 YELVHTLRTHKGGDDRSYNCVSQQEDESKRIGVKISKDLMAVAGEALKTNITTLGPLVLP 361
+E+V T +T ++ +A+K ++ G L
Sbjct: 242 FEIVSTDQT-----------------------------ILPDTEKAMKLHLRE-GGLTFQ 271
Query: 362 MSEQLLFTATLVARKIFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDEVEKHLKLNE 417
+ + +VA+ I K P D+ F + +H GGRA+LD+VE+ L L E
Sbjct: 272 LHRDVPL---MVAKNIENAAEKALSPLGITDWNSVF--WMVHPGGRAILDQVERKLNLKE 326
Query: 418 WVMEPSRMTLYRFGNTSSSCLWY------ELAYFEAKGRIRKG-DKTWQIAFGSGFKCNS 470
+ SR L +GN S+C+ + + + E K +G D FG G +
Sbjct: 327 DKLRASRHVLSEYGNLISACVLFIIDEVRKRSMAEGKSTTGEGLDCGVLFGFGPGMTVET 386
Query: 471 AVWRALK 477
V R+++
Sbjct: 387 VVLRSVR 393
>pdb|3ALE|A Chain A, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|B Chain B, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|C Chain C, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|D Chain D, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
Length = 416
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 76/379 (20%), Positives = 143/379 (37%), Gaps = 56/379 (14%)
Query: 116 FMQIASKIGI------FSEETLSFHKKILERSGMGNMSYVPKAMLDNPAGEKNMAEARKE 169
F +I ++G+ +EE LS H + ++R D P+ + + A
Sbjct: 80 FKRICQEMGVQRRYLHHTEEMLSAHPEFVDR--------------DAPSLDARLDIAADA 125
Query: 170 TEGVIIGAIDELLDKTGVKPRDIGILVVNSSLFNPTPSLSAMVVNHYKLRGNILSYNLGG 229
+ A + + + G DI LVV ++ P + +V LR ++ L
Sbjct: 126 VPELAAEAAKKAIAEWGRPAADITHLVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHL 185
Query: 230 MGCSAGLISIDLAKQLLQLQPNSYALVVSTENLTMNWYAGNDRS---MLLTNCLFRLGGA 286
GC AG ++ LAK L + + LVV+ E LT+ ++ G D LL LF G A
Sbjct: 186 NGCFAGCAALRLAKDLAENSRGARVLVVAAE-LTLMYFTGPDEGCFRTLLVQGLFGDGAA 244
Query: 287 AILLXXXXXXXXXXKYELVHTLRTHKGGDDRSYNCVSQQEDESKRIGVKISKDLMAVAGE 346
A+++ +E+V +T D + N + +R+ + + + + G+
Sbjct: 245 AVIVGADADDVERPLFEIVSAAQTIIPESDHALNMRFTE----RRLDGVLGRQVPGLIGD 300
Query: 347 ALKTNITTLGPLVLPMSEQLLFTATLVARKIFKMKIKPYIPDFKLAFEHFCIHAGGRAVL 406
++ + + L +F + +H G ++
Sbjct: 301 NVERCLLDM------FGPLLGGDGGGGWNDLF-----------------WAVHPGSSTIM 337
Query: 407 DEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYELAYFEAKGRIRKGDKTW-----QIA 461
D+V+ L L + SR L +GN S + + + L + + W +A
Sbjct: 338 DQVDAALGLEPGKLAASRRVLSDYGNMSGATVIFALDELRRQRKEAAAAGEWPELGVMMA 397
Query: 462 FGSGFKCNSAVWRALKTIN 480
FG G ++ + A +N
Sbjct: 398 FGPGMTVDAMLLHATSHVN 416
>pdb|1CGZ|A Chain A, Chalcone Synthase From Alfalfa Complexed With Resveratrol
pdb|1CGK|A Chain A, Chalcone Synthase From Alfalfa Complexed With Naringenin
Length = 389
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 109/275 (39%), Gaps = 53/275 (19%)
Query: 218 LRGNILSYNLGGMGCSAGLISIDLAKQLLQLQPNSYALVVSTENLTMNWYAGNDRSM--L 275
LR + Y + GC AG + LAK L + + LVV +E + + +D + L
Sbjct: 150 LRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSL 209
Query: 276 LTNCLFRLGGAAILLXXXXXXXXXXK-YELVHTLRTHKGGDDRSYNCVSQQEDESKRIGV 334
+ LF G AA+++ +E+V T +T
Sbjct: 210 VGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQT------------------------ 245
Query: 335 KISKDLM-AVAGEALKTNITTLGPLVLPMSEQLLFTATLVARKIFKMKIKPYIP----DF 389
I+ D A+ G + +T L +V++ I K ++ + P D+
Sbjct: 246 -IAPDSEGAIDGHLREAGLTF---------HLLKDVPGIVSKNITKALVEAFEPLGISDY 295
Query: 390 KLAFEHFCIHAGGRAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYELAYFEAKG 449
F + H GG A+LD+VE+ L L M +R L +GN SS+C+ + L K
Sbjct: 296 NSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKS 353
Query: 450 RIRKGDKT------WQI--AFGSGFKCNSAVWRAL 476
+ G KT W + FG G + V R++
Sbjct: 354 -TQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 387
>pdb|1U0V|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0V|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0W|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
Length = 393
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 116/298 (38%), Gaps = 53/298 (17%)
Query: 195 LVVNSSLFNPTPSLSAMVVNHYKLRGNILSYNLGGMGCSAGLISIDLAKQLLQLQPNSYA 254
L+V S+ P + LR + + GC AG + LAK L + +
Sbjct: 131 LIVCSTTTPDLPGADYQLTKLLGLRPYVKRVGVFQHGCFAGGTVLRLAKDLAENNKGARV 190
Query: 255 LVVSTENLTMNWYAGNDRSM--LLTNCLFRLGGAAILLXXXXXXXXXXK-YELVHTLRTH 311
LVV +E + + +D + L+ LF G AA+++ +E+V T +T
Sbjct: 191 LVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQT- 249
Query: 312 KGGDDRSYNCVSQQEDESKRIGVKISKDLM-AVAGEALKTNITTLGPLVLPMSEQLLFTA 370
I+ D A+ G + +T +P
Sbjct: 250 ------------------------IAPDSEGAIDGHLREAGLTFHLKGAVP--------- 276
Query: 371 TLVARKIFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDEVEKHLKLNEWVMEPSRMT 426
+V++ I K ++ + P D+ F + H GG A+LD+VE+ L L M +R
Sbjct: 277 DIVSKNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREV 334
Query: 427 LYRFGNTSSSCLWYELAYFEAKGRIRKGDKT------WQI--AFGSGFKCNSAVWRAL 476
L +GN SS+C+ + L K + G KT W + FG G + V R++
Sbjct: 335 LSEYGNMSSACVLFILDEMRKK-STQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 391
>pdb|2H84|A Chain A, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
pdb|2H84|B Chain B, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
Length = 374
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 114/263 (43%), Gaps = 32/263 (12%)
Query: 206 PSLSAMVVNHYKLRGNILSYNLGGMGCSAGLISIDLAKQLLQLQPNSYALVVSTENLTMN 265
P ++ +++ L ++ +L MGC AGL S+ A L + P + LVV TE +++
Sbjct: 131 PDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVCSLH 190
Query: 266 WYAGNDRSMLLTNCLFRLGGAAILLXXXXXXXXXXKYELVHTLRTHKGGDDRSYNCVSQQ 325
+ + ++ + +F G AA ++ YE++ ++ ++ + V
Sbjct: 191 FSNTDGGDQMVASSIFADGSAAYIIGCNPRIEETPLYEVMCSI--NRSFPNTENAMVWDL 248
Query: 326 EDESKRIGVKISKDLMAVAGEALKTNITTLGPLVLPMSEQLLFTATLVARKIFKMKIKPY 385
E E +G+ S + V G ++ + TL + + L T+T ++ K +
Sbjct: 249 EKEGWNLGLDAS--IPIVIGSGIEAFVDTL------LDKAKLQTSTAISAKDCE------ 294
Query: 386 IPDFKLAFEHFCIHAGGRAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYELAYF 445
F IH GG+++L +E L ++ + + + +GN SS+ + + + +
Sbjct: 295 ----------FLIHTGGKSILMNIENSLGIDPKQTKNTWDVYHAYGNMSSASVIFVMDH- 343
Query: 446 EAKGRIRKGDKTWQI--AFGSGF 466
R K T+ I AFG G
Sbjct: 344 ---ARKSKSLPTYSISLAFGPGL 363
>pdb|1Z1E|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea
pdb|1Z1F|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea (Resveratrol-Bound Form)
Length = 390
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 11/99 (11%)
Query: 386 IPDFKLAFEHFCIHAGGRAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYELAYF 445
I D+ F + H GGRA+LD+VE+ + L M+ +R L +GN SS+C+++ +
Sbjct: 293 ISDYNSIF--WIAHPGGRAILDQVEEKVNLKPEKMKATRDVLSNYGNMSSACVFFIMDLM 350
Query: 446 EAKGRIRKGDKT------WQI--AFGSGFKCNSAVWRAL 476
K + G KT W + FG G + V R++
Sbjct: 351 RKKS-LEAGLKTTGEGLDWGVLFGFGPGLTIETVVLRSM 388
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 218 LRGNILSYNLGGMGCSAGLISIDLAKQLLQLQPNSYALVVSTENLTMNWYAGNDRSM--L 275
L ++ Y + GC AG + LAK L + ++ L+V +EN ++ + ++ M L
Sbjct: 151 LDPSVKRYMMYHQGCFAGGTVLRLAKDLAENNKDARVLIVCSENTSVTFRGPSETDMDSL 210
Query: 276 LTNCLFRLGGAAILL 290
+ LF G AAI++
Sbjct: 211 VGQALFADGAAAIII 225
>pdb|3OIT|A Chain A, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
pdb|3OIT|B Chain B, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
Length = 387
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 75/374 (20%), Positives = 141/374 (37%), Gaps = 56/374 (14%)
Query: 116 FMQIASKIGI------FSEETLSFHKKILERSGMGNMSYVPKAMLDNPAGEKNMAEARKE 169
F +I ++G+ +EE LS H + ++R D P+ + + A
Sbjct: 50 FKRICQEMGVQRRYLHHTEEMLSAHPEFVDR--------------DAPSLDARLDIAADA 95
Query: 170 TEGVIIGAIDELLDKTGVKPRDIGILVVNSSLFNPTPSLSAMVVNHYKLRGNILSYNLGG 229
+ A + + + G DI LVV ++ P + +V LR ++ L
Sbjct: 96 VPELAAEAAKKAIAEWGRPAADITHLVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHL 155
Query: 230 MGCSAGLISIDLAKQLLQLQPNSYALVVSTENLTMNWYAGNDRS---MLLTNCLFRLGGA 286
GC AG ++ LAK L + + LVV+ E LT+ ++ G D LL LF G A
Sbjct: 156 NGCFAGCAALRLAKDLAENSRGARVLVVAAE-LTLMYFTGPDEGCFRTLLVQGLFGDGAA 214
Query: 287 AILLXXXXXXXXXXKYELVHTLRTHKGGDDRSYNCVSQQEDESKRIGVKISKDLMAVAGE 346
A+++ +E+V +T D + N + +R+ + + + + G+
Sbjct: 215 AVIVGADADDVERPLFEIVSAAQTIIPESDHALNMRFTE----RRLDGVLGRQVPGLIGD 270
Query: 347 ALKTNITTLGPLVLPMSEQLLFTATLVARKIFKMKIKPYIPDFKLAFEHFCIHAGGRAVL 406
++ + + L +F + +H G ++
Sbjct: 271 NVERCLLDM------FGPLLGGDGGGGWNDLF-----------------WAVHPGSSTIM 307
Query: 407 DEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYELAYFEAKGRIRKGDKTW-----QIA 461
D+V+ L L + SR L +GN S + + + L + + W +A
Sbjct: 308 DQVDAALGLEPGKLAASRRVLSDYGNMSGATVIFALDELRRQRKEAAAAGEWPELGVMMA 367
Query: 462 FGSGFKCNSAVWRA 475
FG G ++ + A
Sbjct: 368 FGPGMTVDAMLLHA 381
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 101/250 (40%), Gaps = 53/250 (21%)
Query: 231 GCSAGLISIDLAKQLLQLQPNSYALVVSTENLTMNWYAGNDRSM--LLTNCLFRLGGAAI 288
GC AG + AK L + + LVV +E + + ++ ++ L+ LF G AA+
Sbjct: 750 GCYAGGTVLRTAKDLAENNAGARVLVVCSEITVVTFRGPSEDALDSLVGQALFGDGSAAV 809
Query: 289 LLXXXXXXXXXXK-YELVHTLRTHKGGDDRSYNCVSQQEDESKRIGVKISKDLMAVAGEA 347
++ ++LV +T I A+AG
Sbjct: 810 IVGSDPDISIERPLFQLVSAAQTF------------------------IPNSAGAIAGNL 845
Query: 348 LKTNIT-TLGPLVLPMSEQLLFTATLVARKIFKMKIKPYIP----DFKLAFEHFCIHAGG 402
+ +T L P V TL++ + K + + P D+ F + H GG
Sbjct: 846 REVGLTFHLWPNV----------PTLISENVEKCLTQAFDPLGISDWNSLF--WIAHPGG 893
Query: 403 RAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYELAYFEAKGRIRKGDKT----- 457
A+LD VE L L++ +E +R L +GN SS+C+ + L E + + KG++
Sbjct: 894 PAILDAVEAKLNLDKKKLEATRHVLSEYGNMSSACVLFILD--EMRKKSLKGERATTGEG 951
Query: 458 --WQIAFGSG 465
W + FG G
Sbjct: 952 LDWGVLFGFG 961
>pdb|1I89|A Chain A, Chalcone Synthase (G256l)
pdb|1I89|B Chain B, Chalcone Synthase (G256l)
Length = 389
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 372 LVARKIFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDEVEKHLKLNEWVMEPSRMTL 427
+V++ I K ++ + P D+ F + H GG A+LD+VE+ L L M +R L
Sbjct: 274 IVSKNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVL 331
Query: 428 YRFGNTSSSCLWYELAYFEAKGRIRKGDKT------WQI--AFGSGFKCNSAVWRAL 476
+GN SS+C+ + L K + G KT W + FG G + V R++
Sbjct: 332 SEYGNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 387
>pdb|1I88|A Chain A, Chalcone Synthase (G256v)
pdb|1I88|B Chain B, Chalcone Synthase (G256v)
Length = 389
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 372 LVARKIFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDEVEKHLKLNEWVMEPSRMTL 427
+V++ I K ++ + P D+ F + H GG A+LD+VE+ L L M +R L
Sbjct: 274 IVSKNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVL 331
Query: 428 YRFGNTSSSCLWYELAYFEAKGRIRKGDKT------WQI--AFGSGFKCNSAVWRAL 476
+GN SS+C+ + L K + G KT W + FG G + V R++
Sbjct: 332 SEYGNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 387
>pdb|1JWX|A Chain A, Chalcone Synthase--F215s Mutant
Length = 389
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 372 LVARKIFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDEVEKHLKLNEWVMEPSRMTL 427
+V++ I K ++ + P D+ F + H GG A+LD+VE+ L L M +R L
Sbjct: 274 IVSKNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVL 331
Query: 428 YRFGNTSSSCLWYELAYFEAKGRIRKGDKT------WQI--AFGSGFKCNSAVWRAL 476
+GN SS+C+ + L K + G KT W + FG G + V R++
Sbjct: 332 SEYGNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 387
>pdb|1BI5|A Chain A, Chalcone Synthase From Alfalfa
Length = 389
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 372 LVARKIFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDEVEKHLKLNEWVMEPSRMTL 427
+V++ I K ++ + P D+ F + H GG A+LD+VE+ L L M +R L
Sbjct: 274 IVSKNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVL 331
Query: 428 YRFGNTSSSCLWYELAYFEAKGRIRKGDKT------WQI--AFGSGFKCNSAVWRAL 476
+GN SS+C+ + L K + G KT W + FG G + V R++
Sbjct: 332 SEYGNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 387
>pdb|1I86|A Chain A, Chalcone Synthase, G256a Mutant
Length = 389
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 372 LVARKIFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDEVEKHLKLNEWVMEPSRMTL 427
+V++ I K ++ + P D+ F + H GG A+LD+VE+ L L M +R L
Sbjct: 274 IVSKNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVL 331
Query: 428 YRFGNTSSSCLWYELAYFEAKGRIRKGDKT------WQI--AFGSGFKCNSAVWRAL 476
+GN SS+C+ + L K + G KT W + FG G + V R++
Sbjct: 332 SEYGNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 387
>pdb|1CHW|A Chain A, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
pdb|1CHW|B Chain B, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
Length = 389
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 372 LVARKIFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDEVEKHLKLNEWVMEPSRMTL 427
+V++ I K ++ + P D+ F + H GG A+LD+VE+ L L M +R L
Sbjct: 274 IVSKNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVL 331
Query: 428 YRFGNTSSSCLWYELAYFEAKGRIRKGDKT------WQI--AFGSGFKCNSAVWRAL 476
+GN SS+C+ + L K + G KT W + FG G + V R++
Sbjct: 332 SEYGNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 387
>pdb|1CML|A Chain A, Chalcone Synthase From Alfalfa Complexed With Malonyl-Coa
pdb|1D6F|A Chain A, Chalcone Synthase C164a Mutant
Length = 389
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 108/275 (39%), Gaps = 53/275 (19%)
Query: 218 LRGNILSYNLGGMGCSAGLISIDLAKQLLQLQPNSYALVVSTENLTMNWYAGNDRSM--L 275
LR + Y + G AG + LAK L + + LVV +E + + +D + L
Sbjct: 150 LRPYVKRYMMYQQGAFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSL 209
Query: 276 LTNCLFRLGGAAILLXXXXXXXXXXK-YELVHTLRTHKGGDDRSYNCVSQQEDESKRIGV 334
+ LF G AA+++ +E+V T +T
Sbjct: 210 VGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQT------------------------ 245
Query: 335 KISKDLM-AVAGEALKTNITTLGPLVLPMSEQLLFTATLVARKIFKMKIKPYIP----DF 389
I+ D A+ G + +T L +V++ I K ++ + P D+
Sbjct: 246 -IAPDSEGAIDGHLREAGLTF---------HLLKDVPGIVSKNITKALVEAFEPLGISDY 295
Query: 390 KLAFEHFCIHAGGRAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYELAYFEAKG 449
F + H GG A+LD+VE+ L L M +R L +GN SS+C+ + L K
Sbjct: 296 NSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKS 353
Query: 450 RIRKGDKT------WQI--AFGSGFKCNSAVWRAL 476
+ G KT W + FG G + V R++
Sbjct: 354 -TQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 387
>pdb|1BQ6|A Chain A, Chalcone Synthase From Alfalfa With Coenzyme A
Length = 388
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 372 LVARKIFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDEVEKHLKLNEWVMEPSRMTL 427
+V++ I K ++ + P D+ F + H GG A+LD+VE+ L L M +R L
Sbjct: 273 IVSKNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVL 330
Query: 428 YRFGNTSSSCLWYELAYFEAKGRIRKGDKT------WQI--AFGSGFKCNSAVWRAL 476
+GN SS+C+ + L K + G KT W + FG G + V R++
Sbjct: 331 SEYGNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 386
>pdb|1I8B|A Chain A, Chalcone Synthase (g256f)
pdb|1I8B|B Chain B, Chalcone Synthase (g256f)
Length = 389
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 372 LVARKIFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDEVEKHLKLNEWVMEPSRMTL 427
+V++ I K ++ + P D+ F + H GG A+LD+VE+ L L M +R L
Sbjct: 274 IVSKNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVL 331
Query: 428 YRFGNTSSSCLWYELAYFEAKGRIRKGDKT------WQI--AFGSGFKCNSAVWRAL 476
+GN SS+C+ + L K + G KT W + FG G + V R++
Sbjct: 332 SEYGNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 387
>pdb|1XES|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XET|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
Length = 413
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 398 IHAGGRAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYEL 442
+H GGRA+LD VE L L+ + P+R + +GN SS+C+ + L
Sbjct: 325 VHPGGRAILDRVEAKLNLDPTKLIPTRHVMSEYGNMSSACVHFIL 369
>pdb|1U0U|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|E Chain E, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|F Chain F, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
Length = 397
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 398 IHAGGRAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYEL 442
+H GGRA+LD VE L L+ + P+R + +GN SS+C+ + L
Sbjct: 309 VHPGGRAILDRVEAKLNLDPTKLIPTRHVMSEYGNMSSACVHFIL 353
>pdb|1D6I|A Chain A, Chalcone Synthase (H303q Mutant)
pdb|1D6I|B Chain B, Chalcone Synthase (H303q Mutant)
Length = 388
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 15/117 (12%)
Query: 372 LVARKIFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDEVEKHLKLNEWVMEPSRMTL 427
+V++ I K ++ + P D+ F + GG A+LD+VE+ L L M +R L
Sbjct: 273 IVSKNITKALVEAFEPLGISDYNSIF--WIAQPGGPAILDQVEQKLALKPEKMNATREVL 330
Query: 428 YRFGNTSSSCLWYELAYFEAKGRIRKGDKT------WQI--AFGSGFKCNSAVWRAL 476
+GN SS+C+ + L K + G KT W + FG G + V R++
Sbjct: 331 SEYGNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 386
>pdb|1D6H|A Chain A, Chalone Synthase (N336a Mutant Complexed With Coa)
Length = 387
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 15/117 (12%)
Query: 372 LVARKIFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDEVEKHLKLNEWVMEPSRMTL 427
+V++ I K ++ + P D+ F + H GG A+LD+VE+ L L M +R L
Sbjct: 272 IVSKNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVL 329
Query: 428 YRFGNTSSSCLWYELAYFEAKGRIRKGDKT------WQI--AFGSGFKCNSAVWRAL 476
+G SS+C+ + L K + G KT W + FG G + V R++
Sbjct: 330 SEYGAMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 385
>pdb|1UB7|A Chain A, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|B Chain B, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|C Chain C, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|D Chain D, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus
Length = 322
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 11/128 (8%)
Query: 345 GEALKTNITTLGPLVLPMSEQLLFTATLVARKIFKMKIKPYIPDFKLAFEHFCIHAGGRA 404
G ++K + G V + +++ TATL A I K + P D +L F H
Sbjct: 200 GTSMKNRLYMNGREVFKFAVRVMNTATLEA--IEKAGLTP--EDIRL----FVPHQANLR 251
Query: 405 VLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYELAYFEAKGRIRKGDKTWQIAFGS 464
++D + L L W E + + R+GNTS++ + L GRIR+GD ++FG+
Sbjct: 252 IIDAARERLGL-PW--ERVAVNVDRYGNTSTASIPLALKEAVDAGRIREGDHVLLVSFGA 308
Query: 465 GFKCNSAV 472
G +AV
Sbjct: 309 GLTWAAAV 316
>pdb|1TEE|A Chain A, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|B Chain B, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|C Chain C, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|D Chain D, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
Length = 393
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/291 (21%), Positives = 118/291 (40%), Gaps = 30/291 (10%)
Query: 188 KPRDIGILVVNSSLFNPTPSLSAMVVNHYKLRGNILSYNLGGMGCSAGLISIDLAKQLLQ 247
+ +IG+LV+ +S P + +V L +I + MGC+A + ++ A ++
Sbjct: 131 RAAEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVR 190
Query: 248 LQPNSYALVVSTENLTMNWYAGNDRSMLLTNCLFRLGGAAILLXXXXXXXXXXKYELVHT 307
P ALVV E ++N +D + ++ + LF G AA+++ ++V
Sbjct: 191 AHPAMKALVVCIELFSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKVV-- 248
Query: 308 LRTHKGGDDRSYNCVSQQEDESKRIGVKISKDLMAVAGEALKTNITTLGPLVLPMSEQLL 367
+R+ S++ + ++ +GV + E L I + V P+ ++L
Sbjct: 249 VRS-------SFSQLLDNTEDGIVLGVN-HNGITCELSENLPGYIFS---GVAPVVTEML 297
Query: 368 FTATLVARKIFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDEVEKHLKLNEWVMEPSRMTL 427
+ L I D L + IH GG ++++ + L ++ + S L
Sbjct: 298 WDNGL------------QISDIDL----WAIHPGGPKIIEQSVRSLGISAELAAQSWDVL 341
Query: 428 YRFGNTSSSCLWYELAYFEAKGRIRKGDKTW-QIAFGSGFKCNSAVWRALK 477
RFGN S L + L + K T AFG G ++ ++
Sbjct: 342 ARFGNMLSVSLIFVLETMVQQAESAKAISTGVAFAFGPGVTVEGMLFDIIR 392
>pdb|1TED|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|C Chain C, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|D Chain D, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
Length = 393
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/291 (21%), Positives = 118/291 (40%), Gaps = 30/291 (10%)
Query: 188 KPRDIGILVVNSSLFNPTPSLSAMVVNHYKLRGNILSYNLGGMGCSAGLISIDLAKQLLQ 247
+ +IG+LV+ +S P + +V L +I + MGC+A + ++ A ++
Sbjct: 131 RAAEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVR 190
Query: 248 LQPNSYALVVSTENLTMNWYAGNDRSMLLTNCLFRLGGAAILLXXXXXXXXXXKYELVHT 307
P ALVV E ++N +D + ++ + LF G AA+++ ++V
Sbjct: 191 AHPAMKALVVCIELCSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKVV-- 248
Query: 308 LRTHKGGDDRSYNCVSQQEDESKRIGVKISKDLMAVAGEALKTNITTLGPLVLPMSEQLL 367
+R+ S++ + ++ +GV + E L I + V P+ ++L
Sbjct: 249 VRS-------SFSQLLDNTEDGIVLGVN-HNGITCELSENLPGYIFS---GVAPVVTEML 297
Query: 368 FTATLVARKIFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDEVEKHLKLNEWVMEPSRMTL 427
+ L I D L + IH GG ++++ + L ++ + S L
Sbjct: 298 WDNGL------------QISDIDL----WAIHPGGPKIIEQSVRSLGISAELAAQSWDVL 341
Query: 428 YRFGNTSSSCLWYELAYFEAKGRIRKGDKTW-QIAFGSGFKCNSAVWRALK 477
RFGN S L + L + K T AFG G ++ ++
Sbjct: 342 ARFGNMLSVSLIFVLETMVQQAESAKAISTGVAFAFGPGVTVEGMLFDIIR 392
>pdb|3AWJ|A Chain A, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWJ|B Chain B, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWK|A Chain A, Crystal Structure Of The Polyketide Synthase 1 From
Huperzia Serrata
Length = 402
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 13/101 (12%)
Query: 372 LVARKIFKMKIKP----YIPDFKLAFEHFCIHAGGRAVLDEVEKHLKLNEWVMEPSRMTL 427
L+++ I K+ +P + P + F + +H GG A+LD++E L L+ M+ SR L
Sbjct: 287 LISKNIDKVLAEPLEYVHFPSYNDMF--WAVHPGGPAILDQIEAKLGLSTDKMQASRDVL 344
Query: 428 YRFGNTSSSCLWYELAYFEAKGRIRKGDKTWQI-AFGSGFK 467
+GN SS+ + + L +IRK + + G GF+
Sbjct: 345 ASYGNMSSASVLFVL------DQIRKNSEELHLPTTGEGFE 379
>pdb|3FK5|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Iii, Fabh (Xoo4209) From Xanthomonas Oryzae Pv.
Oryzae Kacc10331
Length = 338
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 124/296 (41%), Gaps = 42/296 (14%)
Query: 186 GVKPRDIGILVVNSSLFNP--TPSLSAMVVNHYKLRGNILSYNLGGMGCSAGLISIDLAK 243
G+ IG+LV N+S+ PS +++V + + + +++++ C A + +D+A
Sbjct: 77 GIGIEKIGLLV-NTSVSRDYLEPSTASIVSGNLGVGDHCVTFDVAN-ACLAFINGMDIAA 134
Query: 244 QLLQLQPNSYALVVSTENLTMNWYAGNDR--SMLLTNCLFRLGGAAILLXXXXXXXXXXK 301
++L+ YALVV E + + +R S +T FR AA+ L +
Sbjct: 135 RMLERGEIDYALVVDGETANLVYEKTLERMTSPDVTEEEFRNELAALTLGCGAAAMVMAR 194
Query: 302 YELVHTLRTHKGGDDRSYNCVSQQEDESKRIGVKISKDLMAVAGEALKTNITTLGPLVLP 361
ELV +KGG V++ E ++ + + D M T L+L
Sbjct: 195 TELVPDAPRYKGG-------VTRSATEWNKL-CRGNLDRM-----------VTDTRLLLI 235
Query: 362 MSEQLLFTATLVARKIFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDEVEKHLKLNEWVME 421
+L L AR++ + + F IH R K + +
Sbjct: 236 EGIKLAQKTFLAARQVLGWAVDE--------LDQFVIHQVSRPHTAAFVKSFGI-----D 282
Query: 422 PSR-MTLY-RFGNTSSSCLWYELAYFEAKGRIRKGDKTWQIAFGSGFKCNSA--VW 473
P++ MT++ GN + + L+ + GR++KGD+ + GSG C+ A VW
Sbjct: 283 PAKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAEVVW 338
>pdb|1HN9|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HN9|B Chain B, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HND|A Chain A, Crystal Structure Of Beta-ketoacyl-acp Synthase Iii-coa
Complex
pdb|1HNJ|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Malonyl-Coa
pdb|1HNK|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii, Apo
Tetragonal Form
pdb|2EFT|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2EFT|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2GYO|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
pdb|2GYO|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
Length = 317
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 69/316 (21%), Positives = 127/316 (40%), Gaps = 41/316 (12%)
Query: 160 EKNMAEARKETEGVIIGAIDELLDKTGVKPRDIGILVV-NSSLFNPTPSLSAMVVNHYKL 218
E+++A + + A ++ G++ IG++VV +S + PS + + + +
Sbjct: 41 ERHIAAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGI 100
Query: 219 RGNILSYNLGGMGCSAGLISIDLAKQLLQLQPNSYALVVSTENLTMNWYAGNDRSMLLTN 278
+G ++++ C+ ++ +A Q ++ YALVV ++ L DR ++
Sbjct: 101 KG-CPAFDVAA-ACAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCDP-TDRGTII-- 155
Query: 279 CLFRLGGAAILLXXXXXXXXXXKYELVHTLRTHKGGDDRSYNCVSQQEDESKRIGVKISK 338
+F G A +L E + TH D SY + + + R+ + S
Sbjct: 156 -IFGDGAGAAVLAAS---------EEPGIISTHLHADG-SYGELLTLPN-ADRVNPENSI 203
Query: 339 DLMAVAGEALKTNITTLGPLVLPMSEQLLFTATLVARKIFKMKIKPYIPDFKLAFEHFCI 398
L E K +T L +V TL A + + ++ +P
Sbjct: 204 HLTMAGNEVFKVAVTELAHIV---------DETLAANNLDRSQLDWLVP----------- 243
Query: 399 HAGGRAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYELAYFEAKGRIRKGDKTW 458
H ++ K L ++ M+ +TL R GNTS++ + L GRI+ G
Sbjct: 244 HQANLRIISATAKKLGMS---MDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVL 300
Query: 459 QIAFGSGFKCNSAVWR 474
AFG GF SA+ R
Sbjct: 301 LEAFGGGFTWGSALVR 316
>pdb|3ROW|A Chain A, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3ROW|B Chain B, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3S1Z|A Chain A, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S1Z|B Chain B, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S20|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
pdb|3S20|B Chain B, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
Length = 344
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 122/297 (41%), Gaps = 49/297 (16%)
Query: 191 DIGI----LVVNSSLFNP--TPSLSAMVVNHYKLRGNILSYNLGGMGCSAGLISIDLAKQ 244
+IGI L++N+S+ PS +++V + + + +++++ C A + +D+A +
Sbjct: 83 NIGIEKIGLLINTSVSRDYLEPSTASIVSGNLGVSDHCMTFDVAN-ACLAFINGMDIAAR 141
Query: 245 LLQLQPNSYALVVSTENLTMNWYAGNDR--SMLLTNCLFRLGGAAILLXXXXXXXXXXKY 302
+L+ YALVV E + + +R S +T FR AA+ L +
Sbjct: 142 MLERGEIDYALVVDGETANLVYEKTLERMTSPDVTEEEFRNELAALTLGCGAAAMVMARS 201
Query: 303 ELVHTLRTHKGGDDRSYNCVSQQEDESKRIGVKISKDLMAVAGEALKTNITTLGPL--VL 360
ELV +KGG RS A + N G L ++
Sbjct: 202 ELVPDAPRYKGGVTRS----------------------------ATEWNKLCRGNLDRMV 233
Query: 361 PMSEQLLFTATLVARKIFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDEVEKHLKLNEWVM 420
+ LL +A+K F + K + + F IH R K +
Sbjct: 234 TDTRLLLIEGIKLAQKTF-VAAKQVLGWAVEELDQFVIHQVSRPHTAAFVKSFGI----- 287
Query: 421 EPSR-MTLY-RFGNTSSSCLWYELAYFEAKGRIRKGDKTWQIAFGSGFKCNSA--VW 473
+P++ MT++ GN + + L+ + GR++KGD+ + GSG C+ A VW
Sbjct: 288 DPAKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAEVVW 344
>pdb|3S21|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal)
pdb|3S23|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal) Xe Derivative
Length = 345
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 122/297 (41%), Gaps = 49/297 (16%)
Query: 191 DIGI----LVVNSSLFNP--TPSLSAMVVNHYKLRGNILSYNLGGMGCSAGLISIDLAKQ 244
+IGI L++N+S+ PS +++V + + + +++++ C A + +D+A +
Sbjct: 84 NIGIEKIGLLINTSVSRDYLEPSTASIVSGNLGVSDHCMTFDVAN-ACLAFINGMDIAAR 142
Query: 245 LLQLQPNSYALVVSTENLTMNWYAGNDR--SMLLTNCLFRLGGAAILLXXXXXXXXXXKY 302
+L+ YALVV E + + +R S +T FR AA+ L +
Sbjct: 143 MLERGEIDYALVVDGETANLVYEKTLERMTSPDVTEEEFRNELAALTLGCGAAAMVMARS 202
Query: 303 ELVHTLRTHKGGDDRSYNCVSQQEDESKRIGVKISKDLMAVAGEALKTNITTLGPL--VL 360
ELV +KGG RS A + N G L ++
Sbjct: 203 ELVPDAPRYKGGVTRS----------------------------ATEWNKLCRGNLDRMV 234
Query: 361 PMSEQLLFTATLVARKIFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDEVEKHLKLNEWVM 420
+ LL +A+K F + K + + F IH R K +
Sbjct: 235 TDTRLLLIEGIKLAQKTF-VAAKQVLGWAVEELDQFVIHQVSRPHTAAFVKSFGI----- 288
Query: 421 EPSR-MTLY-RFGNTSSSCLWYELAYFEAKGRIRKGDKTWQIAFGSGFKCNSA--VW 473
+P++ MT++ GN + + L+ + GR++KGD+ + GSG C+ A VW
Sbjct: 289 DPAKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAEVVW 345
>pdb|2P0U|A Chain A, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
pdb|2P0U|B Chain B, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
Length = 413
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 396 FCIHAGGRAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWY------ELAYFEAKG 449
+ +H GG A+LD+VE L+L + + SR L +GN SS+ + + E + K
Sbjct: 318 WAVHPGGPAILDQVEAKLELEKGKFQASRDILSDYGNMSSASVLFVLDRVRERSLESNKS 377
Query: 450 RIRKGDK-TWQIAFGSGFKCNSAVWRAL 476
+G + + I FG G + + RAL
Sbjct: 378 TFGEGSEWGFLIGFGPGLTVETLLLRAL 405
>pdb|3A5S|A Chain A, Benzalacetone Synthase (I207lL208F)
pdb|3A5S|B Chain B, Benzalacetone Synthase (I207lL208F)
Length = 387
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 106/266 (39%), Gaps = 51/266 (19%)
Query: 230 MGCSAGLISIDLAKQLLQLQPNSYALVVSTENLTMNWYAGNDRSML---LTNCLFRLGGA 286
+GC AG + LAK + + + L+V +E +T + G + L + LF G A
Sbjct: 158 LGCYAGGTVLRLAKDIAENNKGARVLIVCSE-MTTTCFRGPSETHLDSMIGQALFGDGAA 216
Query: 287 AILLXXXXXXXXXXK-YELVHTLRTHKGGDDRSYNCVSQQEDESKRIGVKISKDLMAVAG 345
A+++ +ELV T +T + + A+ G
Sbjct: 217 AVIVGADPDLTVERPIFELVSTAQT------------------------IVPESHGAIEG 252
Query: 346 EALKTNITTLGPLVLPMSEQLLFTATLVARKIFKMKIKPYIP----DFKLAFEHFCIHAG 401
L++ ++ +P TL++ I + P D+ F + H G
Sbjct: 253 HLLESGLSFHLYKTVP---------TLISNNIKTCLSDAFTPLNISDWNSLF--WIAHPG 301
Query: 402 GRAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYELAYFEAK----GRIRKGDK- 456
G A+LD+V + L + ++ +R L +GN SS+ +++ + K G+ G+
Sbjct: 302 GPAILDQVTAKVGLEKEKLKVTRQVLKDYGNMSSATVFFIMDEMRKKSLENGQATTGEGL 361
Query: 457 TWQI--AFGSGFKCNSAVWRALKTIN 480
W + FG G + V R++ I+
Sbjct: 362 EWGVLFGFGPGITVETVVLRSVPVIS 387
>pdb|2D3M|A Chain A, Pentaketide Chromone Synthase Complexed With Coenzyme A
pdb|2D3M|B Chain B, Pentaketide Chromone Synthase Complexed With Coenzyme A
Length = 406
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 399 HAGGRAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYELAYFE----AKGRIRKG 454
H GGRA+LD+VE LKL +R L+ +GN S+ + Y L AKG G
Sbjct: 319 HPGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAKGLETYG 378
Query: 455 DK-TWQI--AFGSGFKCNSAVWRAL 476
+ W + FG G + + +L
Sbjct: 379 EGLEWGVLLGFGPGITVETILLHSL 403
>pdb|2D51|A Chain A, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D51|B Chain B, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D52|A Chain A, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
pdb|2D52|B Chain B, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
Length = 406
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 399 HAGGRAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYELAYFE----AKGRIRKG 454
H GGRA+LD+VE LKL +R L+ +GN S+ + Y L AKG G
Sbjct: 319 HPGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAKGLETYG 378
Query: 455 DK-TWQI--AFGSGFKCNSAVWRAL 476
+ W + FG G + + +L
Sbjct: 379 EGLEWGVLLGFGPGITVETILLHSL 403
>pdb|3IL9|A Chain A, Structure Of E. Coli Fabh
pdb|3IL9|B Chain B, Structure Of E. Coli Fabh
Length = 340
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 68/317 (21%), Positives = 125/317 (39%), Gaps = 43/317 (13%)
Query: 160 EKNMAEARKETEGVIIGAIDELLDKTGVKPRDIGILVV-NSSLFNPTPSLSAMVVNHYKL 218
E+++A + + A ++ G++ IG++VV +S + PS + + + +
Sbjct: 64 ERHIAAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGI 123
Query: 219 RGNILSYNLGGMGCSAGLI-SIDLAKQLLQLQPNSYALVVSTENLTMNWYAGNDRSMLLT 277
+G ++++ AG ++ +A Q ++ YALVV ++ L DR ++
Sbjct: 124 KG-CPAFDVAA--AXAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCDP-TDRGTII- 178
Query: 278 NCLFRLGGAAILLXXXXXXXXXXKYELVHTLRTHKGGDDRSYNCVSQQEDESKRIGVKIS 337
+F G A +L E + TH D ++ + R+ + S
Sbjct: 179 --IFGDGAGAAVLAAS---------EEPGIISTHLHADGSYGELLTLPN--ADRVNPENS 225
Query: 338 KDLMAVAGEALKTNITTLGPLVLPMSEQLLFTATLVARKIFKMKIKPYIPDFKLAFEHFC 397
L E K +T L +V TL A + + ++ +P
Sbjct: 226 IHLTMAGNEVFKVAVTELAHIV---------DETLAANNLDRSQLDWLVP---------- 266
Query: 398 IHAGGRAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYELAYFEAKGRIRKGDKT 457
H ++ K L ++ M+ +TL R GNTS++ + L GRI+ G
Sbjct: 267 -HQANLRIISATAKKLGMS---MDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLV 322
Query: 458 WQIAFGSGFKCNSAVWR 474
AFG GF SA+ R
Sbjct: 323 LLEAFGGGFTWGSALVR 339
>pdb|1MZS|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii With
Bound Dichlorobenzyloxy-Indole-Carboxylic Acid Inhibitor
Length = 317
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 70/317 (22%), Positives = 127/317 (40%), Gaps = 43/317 (13%)
Query: 160 EKNMAEARKETEGVIIGAIDELLDKTGVKPRDIGILVV-NSSLFNPTPSLSAMVVNHYKL 218
E+++A + + A ++ G++ IG++VV +S + PS + + + +
Sbjct: 41 ERHIAAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGI 100
Query: 219 RGNILSYNLGGMGCSAGLI-SIDLAKQLLQLQPNSYALVVSTENLTMNWYAGNDRSMLLT 277
+G ++++ AG ++ +A Q ++ YALVV ++ L DR ++
Sbjct: 101 KG-CPAFDVAA--AXAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCDP-TDRGTII- 155
Query: 278 NCLFRLGGAAILLXXXXXXXXXXKYELVHTLRTHKGGDDRSYNCVSQQEDESKRIGVKIS 337
+F G A +L E + TH D SY + + + R+ + S
Sbjct: 156 --IFGDGAGAAVLAAS---------EEPGIISTHLHADG-SYGELLTLPN-ADRVNPENS 202
Query: 338 KDLMAVAGEALKTNITTLGPLVLPMSEQLLFTATLVARKIFKMKIKPYIPDFKLAFEHFC 397
L E K +T L +V TL A + + ++ +P
Sbjct: 203 IHLTMAGNEVFKVAVTELAHIV---------DETLAANNLDRSQLDWLVP---------- 243
Query: 398 IHAGGRAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYELAYFEAKGRIRKGDKT 457
H ++ K L ++ M+ +TL R GNTS++ + L GRI+ G
Sbjct: 244 -HQANLRIISATAKKLGMS---MDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLV 299
Query: 458 WQIAFGSGFKCNSAVWR 474
AFG GF SA+ R
Sbjct: 300 LLEAFGGGFTWGSALVR 316
>pdb|3A5Q|A Chain A, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5Q|B Chain B, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5R|A Chain A, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
pdb|3A5R|B Chain B, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
Length = 387
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 399 HAGGRAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYELAYFEAK----GRIRKG 454
H GG A+LD+V + L + ++ +R L +GN SS+ +++ + K G+ G
Sbjct: 299 HPGGPAILDQVTAKVGLEKEKLKVTRQVLKDYGNMSSATVFFIMDEMRKKSLENGQATTG 358
Query: 455 DK-TWQI--AFGSGFKCNSAVWRALKTIN 480
+ W + FG G + V R++ I+
Sbjct: 359 EGLEWGVLFGFGPGITVETVVLRSVPVIS 387
>pdb|1EBL|A Chain A, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
pdb|1EBL|B Chain B, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
Length = 317
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 68/316 (21%), Positives = 123/316 (38%), Gaps = 41/316 (12%)
Query: 160 EKNMAEARKETEGVIIGAIDELLDKTGVKPRDIGILVV-NSSLFNPTPSLSAMVVNHYKL 218
E+++A + A ++ G++ IG++VV +S + PS + + + +
Sbjct: 41 ERHIAAPNETVSTXGFEAATRAIEXAGIEKDQIGLIVVATTSATHAFPSAACQIQSXLGI 100
Query: 219 RGNILSYNLGGMGCSAGLISIDLAKQLLQLQPNSYALVVSTENLTMNWYAGNDRSMLLTN 278
+G ++++ C+ ++ +A Q ++ YALVV ++ L DR ++
Sbjct: 101 KG-CPAFDVAAA-CAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCDP-TDRGTII-- 155
Query: 279 CLFRLGGAAILLXXXXXXXXXXKYELVHTLRTHKGGDDRSYNCVSQQEDESKRIGVKISK 338
+F G A +L E + TH D SY + + + R+ + S
Sbjct: 156 -IFGDGAGAAVLAAS---------EEPGIISTHLHADG-SYGELLTLPN-ADRVNPENSI 203
Query: 339 DLMAVAGEALKTNITTLGPLVLPMSEQLLFTATLVARKIFKMKIKPYIPDFKLAFEHFCI 398
L E K +T L +V TL A + ++ +P
Sbjct: 204 HLTXAGNEVFKVAVTELAHIV---------DETLAANNNDRSQLDWLVP----------- 243
Query: 399 HAGGRAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYELAYFEAKGRIRKGDKTW 458
H ++ K L + + +TL R GNTS++ + L GRI+ G
Sbjct: 244 HQANLRIISATAKKLGXS---XDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVL 300
Query: 459 QIAFGSGFKCNSAVWR 474
AFG GF SA+ R
Sbjct: 301 LEAFGGGFTWGSALVR 316
>pdb|1HNH|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Degraded Form Of Acetyl-Coa
Length = 317
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 69/317 (21%), Positives = 124/317 (39%), Gaps = 43/317 (13%)
Query: 160 EKNMAEARKETEGVIIGAIDELLDKTGVKPRDIGILVV-NSSLFNPTPSLSAMVVNHYKL 218
E+++A + A ++ G++ IG++VV +S + PS + + + +
Sbjct: 41 ERHIAAPNETVSTXGFEAATRAIEXAGIEKDQIGLIVVATTSATHAFPSAACQIQSXLGI 100
Query: 219 RGNILSYNLGGMGCSAGLI-SIDLAKQLLQLQPNSYALVVSTENLTMNWYAGNDRSMLLT 277
+G ++++ AG ++ +A Q ++ YALVV ++ L DR ++
Sbjct: 101 KG-CPAFDV--AAAXAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCDP-TDRGTII- 155
Query: 278 NCLFRLGGAAILLXXXXXXXXXXKYELVHTLRTHKGGDDRSYNCVSQQEDESKRIGVKIS 337
+F G A +L E + TH D SY + + + R+ + S
Sbjct: 156 --IFGDGAGAAVLAAS---------EEPGIISTHLHADG-SYGELLTLPN-ADRVNPENS 202
Query: 338 KDLMAVAGEALKTNITTLGPLVLPMSEQLLFTATLVARKIFKMKIKPYIPDFKLAFEHFC 397
L E K +T L +V TL A + + ++ +P
Sbjct: 203 IHLTXAGNEVFKVAVTELAHIV---------DETLAANNLDRSQLDWLVP---------- 243
Query: 398 IHAGGRAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYELAYFEAKGRIRKGDKT 457
H ++ K L + + +TL R GNTS++ + L GRI+ G
Sbjct: 244 -HQANLRIISATAKKLGXS---XDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLV 299
Query: 458 WQIAFGSGFKCNSAVWR 474
AFG GF SA+ R
Sbjct: 300 LLEAFGGGFTWGSALVR 316
>pdb|3V7I|A Chain A, Germicidin Synthase (Gcs) From Streptomyces Coelicolor, A
Type Iii Polyketide Synthase
Length = 413
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Query: 182 LDKTGVKPRDIGILVVNSSLFNPTPSLSAMVVNHYKLRGNILSYNLGGMGCSAGLISIDL 241
L G+ D+ L+ ++S P L + N LRG+ + C AG S+ L
Sbjct: 149 LQIAGLDVADVDCLITSNSTTPALPGLDVALANRLPLRGDTMLLPATQWACVAGTRSLAL 208
Query: 242 AKQLLQLQPNSYALVVSTENLTMNWYAGNDR-SMLLTNCLF 281
A L+ P+ LVV +E L+ + +D L+ LF
Sbjct: 209 AADLVAADPDRVVLVVISEALSTTYQPADDTLESLIVRLLF 249
>pdb|3IL3|A Chain A, Structure Of Haemophilus Influenzae Fabh
Length = 323
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 63/295 (21%), Positives = 117/295 (39%), Gaps = 44/295 (14%)
Query: 182 LDKTGVKPRDIG-ILVVNSSLFNPTPSLSAMVVNHYKLRGNILSYNLGGMGCSAGLI-SI 239
++ + P+DI I+V +S + PS + V + + +S++L G + ++
Sbjct: 70 IEAAQINPQDIELIIVATTSHSHAYPSAACQVQGLLNI-DDAISFDLAA--AXTGFVYAL 126
Query: 240 DLAKQLLQLQPNSYALVVSTENLTMNWYAGNDRSMLLTNCLFRLGGAAILLXXXXXXXXX 299
+A Q ++ ALV+ ++ L DRS T LF G A++L
Sbjct: 127 SVADQFIRAGKVKKALVIGSD-LNSRKLDETDRS---TVVLFGDGAGAVILEAS------ 176
Query: 300 XKYELVHTLRTHKGGDDRSYNCVSQQEDESKRIGVKISKDLMAVAGEALKTNITTLGPLV 359
+ E + + H D + ++Q E G++ S + E K + L +V
Sbjct: 177 -EQEGIISTHLHASADKNNALVLAQPER-----GIEKSGYIEMQGNETFKLAVRELSNVV 230
Query: 360 LPMSEQLLFTATLVARKIFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDEVEKHLKLNEWV 419
TL+A + K + +P H ++ K L+++
Sbjct: 231 ---------EETLLANNLDKKDLDWLVP-----------HQANLRIITATAKKLEMD--- 267
Query: 420 MEPSRMTLYRFGNTSSSCLWYELAYFEAKGRIRKGDKTWQIAFGSGFKCNSAVWR 474
M +TL ++ N S++ + L GRI++G AFG G+ SA+ R
Sbjct: 268 MSQVVVTLDKYANNSAATVPVALDEAIRDGRIQRGQLLLLEAFGGGWTWGSALVR 322
>pdb|3OV3|A Chain A, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|B Chain B, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|C Chain C, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|D Chain D, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 396 FCIHAGGRAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYELAYFEAK----GRI 451
+ H G A++D +E L+L+ + +R +GN S+ +++ + + GR
Sbjct: 300 WVAHPGNWAIIDAIEAKLQLSPDKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRS 359
Query: 452 RKGDK-TWQI--AFGSGFKCNSAVWRAL 476
GD W + FG G + V R++
Sbjct: 360 TTGDGLQWGVLLGFGPGLSIETVVLRSM 387
>pdb|3OV2|A Chain A, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|B Chain B, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|C Chain C, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|D Chain D, Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 396 FCIHAGGRAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYELAYFEAK----GRI 451
+ H G A++D +E L+L+ + +R +GN S+ +++ + + GR
Sbjct: 300 WVAHPGNWAIIDAIEAKLQLSPDKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRS 359
Query: 452 RKGDK-TWQI--AFGSGFKCNSAVWRAL 476
GD W + FG G + V R++
Sbjct: 360 TTGDGLQWGVLLGFGPGLSIETVVLRSM 387
>pdb|3GWA|A Chain A, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWA|B Chain B, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|A Chain A, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|B Chain B, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
Length = 365
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 68/174 (39%), Gaps = 26/174 (14%)
Query: 314 GDDRSYNCVSQQEDESKRIGVKI-------SKDLMAVAG--------------EALKTNI 352
GD S V + E +RIG + + +L+ AG E N+
Sbjct: 188 GDGASATAVIAEHGELERIGPFVFGTDGRGAPNLIVKAGLFREPKSADSAREHEDASGNV 247
Query: 353 TTLGPLVLPMSEQLLFTATLVARKIFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDEVEKH 412
T L + +E + F+ V R ++ P + + F +H R +LD + K
Sbjct: 248 RTDEHLYMNGAEVMAFSLAEVPRAADRLLALAGEP--RENIDCFVLHQANRFMLDALRKK 305
Query: 413 LKLNEWVMEPSRMTLYRFGNTSSSCLWYELAYFEAKGRIRKGDKTWQIAFGSGF 466
+K+ E + + GNT SS L L A G + +G + + FG G+
Sbjct: 306 MKIPEHKFP---VLMEHCGNTVSSTLPLALETMRANGTLARGMRLMLLGFGVGY 356
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 333 GVKISKDLMAVAGEALKTNITTLGPLVLPMSEQ 365
G KI D++A A E++ +++TTLGP P S++
Sbjct: 423 GKKILYDILAFAKESVNSHVTTLGPQNFPASDK 455
>pdb|4DD5|A Chain A, Biosynthetic Thiolase (Thla1) From Clostridium Difficile
Length = 396
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 232 CSAGLISIDLAKQLLQLQPNSYALVVSTENLTMNWY 267
C +GL S+ +A QL+ L LV EN++M+ Y
Sbjct: 93 CGSGLRSVSMASQLIALGDADIMLVGGAENMSMSPY 128
>pdb|2GOJ|A Chain A, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Plasmodium Falciparum
pdb|2GOJ|B Chain B, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Plasmodium Falciparum
Length = 197
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 127 SEETLSFHKKILERSGMGNMSYVPKAMLDNPAGEKNMAEARKETEGVIIGAIDELLDKT 185
SEETL+FH + G ++ + + D P EK++ + KE+ G I ++ + T
Sbjct: 19 SEETLNFH---YNKHHAGYVNKLNTLIKDTPFAEKSLLDIVKESSGAIFNNAAQIWNHT 74
>pdb|2BPI|A Chain A, Stucture Of Iron Dependent Superoxide Dismutase From P.
Falciparum.
pdb|2BPI|B Chain B, Stucture Of Iron Dependent Superoxide Dismutase From P.
Falciparum
Length = 206
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 127 SEETLSFHKKILERSGMGNMSYVPKAMLDNPAGEKNMAEARKETEGVIIGAIDELLDKT 185
SEETL+FH + G ++ + + D P EK++ + KE+ G I ++ + T
Sbjct: 20 SEETLNFH---YNKHHAGYVNKLNTLIKDTPFAEKSLLDIVKESSGAIFNNAAQIWNHT 75
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|A Chain A, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|A Chain A, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|A Chain A, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 839
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 211 MVVNHYKLRGNILSYNLGGMGCSAGLISIDLAKQLLQLQPNSYAL 255
++ + +K R +IL+ N G + G + D A LQL PN Y L
Sbjct: 713 IIYSEFKQRYSILAPNAVPSGFADGKVVTDKALSALQLDPNEYRL 757
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,122,507
Number of Sequences: 62578
Number of extensions: 548128
Number of successful extensions: 1351
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1271
Number of HSP's gapped (non-prelim): 92
length of query: 507
length of database: 14,973,337
effective HSP length: 103
effective length of query: 404
effective length of database: 8,527,803
effective search space: 3445232412
effective search space used: 3445232412
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)