BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045559
         (335 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
           Iv From Human Fetal Brain (Kiaa1342)
          Length = 138

 Score = 33.1 bits (74), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 196 LDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDM--SDEVFEEILGPNCLLEIS 250
           L + LD  +      + +P+     L  H+ ILSFD    D++  E+L P   +E+S
Sbjct: 65  LRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELS 121


>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A
          Bent Solenoid With A Hydrophobic Amino-terminal Pocket
          Length = 310

 Score = 32.7 bits (73), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 6/50 (12%)

Query: 17 FRCVCK------SWYELFESPSFISKHLKAGNSNTRLILRYVDSSDDPEY 60
          FRCVC        W E F+  S +   + AG  N    L+ VD+  DP  
Sbjct: 7  FRCVCNFSEPQPDWSEAFQCVSAVEVEIHAGGLNLEPFLKRVDADADPRQ 56


>pdb|1HYQ|A Chain A, Mind Bacterial Cell Division Regulator From A. Fulgidus
          Length = 263

 Score = 30.0 bits (66), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 23/46 (50%)

Query: 286 WTKEFSTTPILAVDAPIGFWKNDTFFIRSNTEELLLYDPNSEEIID 331
            T+   +T IL +DAP G  ++    I +  E LL+ +P    I D
Sbjct: 104 LTQIMESTDILLLDAPAGLERSAVIAIAAAQELLLVVNPEISSITD 149


>pdb|1R1A|2 Chain 2, Crystal Structure Of Human Rhinovirus Serotype 1a (Hrv1a)
 pdb|2HWD|2 Chain 2, A Comparison Of The Anti-Rhinoviral Drug Binding Pocket In
           Hrv14 And Hrv1a
 pdb|2HWE|2 Chain 2, A Comparison Of The Anti-Rhinoviral Drug Binding Pocket In
           Hrv14 And Hrv1a
 pdb|2HWF|2 Chain 2, A Comparison Of The Anti-Rhinoviral Drug Binding Pocket In
           Hrv14 And Hrv1a
          Length = 263

 Score = 28.1 bits (61), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 159 HDSELGKVLNDSRQVFIYSFSDNSWRNFQGFEFG 192
           H  E G+ ++  R   +   SD+SW NF G   G
Sbjct: 148 HPGEAGRDVSQERDASLRQPSDDSWLNFDGTLLG 181


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.144    0.466 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,548,418
Number of Sequences: 62578
Number of extensions: 449024
Number of successful extensions: 893
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 889
Number of HSP's gapped (non-prelim): 6
length of query: 335
length of database: 14,973,337
effective HSP length: 99
effective length of query: 236
effective length of database: 8,778,115
effective search space: 2071635140
effective search space used: 2071635140
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)